Citrus Sinensis ID: 010997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MDPQAPKKRGRKPKPKEDKKDEPKMKESTTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHcccccccEEEEEcccccccccccEEEEEEEEccccccccEEEEEEEEcccccccccccccccccccccccccEEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccEEEEcccccEEEEEEEcccccEEEEEcccccEEEEEcccccccccccccEEEEEcccccEEEccccccccccccccccccccEEEEEccccEEEEEEEEcccccEEEEEEccccEEEEEcccccccEEEEEccccccEEEEEEccccccEEEEEcccccEEEEEccccccccccccEEEcccccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccccccEEEEcccccccEEEEEEccccccEEEEEcccccccccccEEEEEEccccccccccccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccccccHHcccccHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEcccccccccccEEEEEEEEccccccccEEEEEEEEcccccccHHHHHccccccccccEEEEEEEEcccccEEEEEEccccccEEEEEcccccEEEEEcccccccccccccccccccEEEEcccccEEEEEEEcccccEEEEcccccEEEEEEEccccEEEEEccccccEEEEcccccEEEEccccccEEEEcccccccEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEccccccccEEEEEcccccEEEEEEccccccEEEEEcccccEEEEEcccccccccccEEEEEEcccccEEEEEEccccccEEEEcccccEEEEEEccccccccccccccccccccHHEEcccccccEcEEEEcccccEEEEEEcccccccccccEEEEEEcHHHcccccccccEEEccccccEEEEEccc
Coil and Loop (DISEMBL)
mdpqapkkrgrkpkpkedkkdepkmkestttkrtahqhavddkythwKSLVPVLYDWLANhnlvwpslscrwgpqleqatyKNRQRLylseqtdgsvpntlVIANCEVVKPRVAAAEHISQFNeearspfvkkhktiihpgevnrirelpqntkivathtdspdvliwdveaqpnrhavlgatnsrpdliltghqdnaefalamcptepyvlsggkdkSVVLWSIQdhitssatdpataksagssgsiikqspkpgdgndkaadgpsvgprgiynghedtvedvtfcpssaqefcsvgddsclilwdarvgtspvikvekahdadlhcvdwnplddnliltgsadnsvrmfdrrnltsngvgspinkfegHSAAVLCVqwspdkssvfgssaedgllNIWDYEKvgkkveqgprttnypaglffqhaghrdkvvdfhwnasdpwtvvsvsddcdstggggtlQIWRMsdliyrpqDEVLAELEKFKAHVISCTSKP
Flexible Loop (DISEMBL)
mdpqapkkrgrkpkpkedkkdepkmkestttkrtahqhavddkytHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSeqtdgsvpnTLVIANCEVVKPRVAAAEHISqfneearspfvkkhktiihpgevnrirelpqnTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHitssatdpataksagssgsiikqspkpgdgndKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Low Complexity Region (SEG)
MDPQApkkrgrkpkpkedkkdepkmkESTTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWtvvsvsddcdstggggtLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Disordered region (IsUnstruct)
**************************************AVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNE***SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI*******************************************IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC****
Disordered Region (DISOPRED)
****************************************DDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVK********************VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ*************PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK*********NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI*****EVLAELEKFKAHVISCTSKP
Disordered Region (DISEMBL)
****************************************DDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHIT*****************IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH********
Disordered Region (DISPRO)
*********************************TAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNR****GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV**********TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPQAPKKRGRKPKPKEDKKDEPKMKESTTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
O22607	507	WD-40 repeat-containing p	yes	no	0.961	0.940	0.815	0.0
Q9SU78	487	WD-40 repeat-containing p	no	no	0.923	0.940	0.733	0.0
Q60972	425	Histone-binding protein R	yes	no	0.780	0.910	0.328	4e-54
Q09028	425	Histone-binding protein R	yes	no	0.780	0.910	0.328	4e-54
Q3MHL3	425	Histone-binding protein R	yes	no	0.780	0.910	0.328	4e-54
Q9I8G9	424	Histone-binding protein R	yes	no	0.818	0.957	0.323	8e-54
Q5M7K4	425	Histone-binding protein R	yes	no	0.780	0.910	0.328	1e-53
Q6INH0	425	Histone-binding protein R	N/A	no	0.780	0.910	0.328	2e-53
Q5RF92	425	Histone-binding protein R	yes	no	0.780	0.910	0.326	2e-53
Q6P315	425	Histone-binding protein R	no	no	0.808	0.943	0.317	3e-53

>sp|O22607|MSI4_ARATH WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/499 (81%), Positives = 442/499 (88%), Gaps = 22/499 (4%)

Query: 5   APKKRGRKPKPKEDKKD-------EPKMKESTTTKRTAHQHAVDDKYTHWKSLVPVLYDW 57
            PKKRGRKPK KED +        + KMKES   K+T    +VD+KY+ WK LVP+LYDW
Sbjct: 24  GPKKRGRKPKTKEDSQTPSSQQQSDVKMKESG--KKTQQSPSVDEKYSQWKGLVPILYDW 81

Query: 58  LANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAE 117
           LANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAE
Sbjct: 82  LANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAE 141

Query: 118 HISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH 177
           HISQFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVLIWDVE QPNRH
Sbjct: 142 HISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVETQPNRH 201

Query: 178 AVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA 237
           AVLGA NSRPDLILTGHQDNAEFALAMCPTEP+VLSGGKDKSVVLWSIQDHIT+  TD  
Sbjct: 202 AVLGAANSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITTIGTD-- 259

Query: 238 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297
               + SSGSIIKQ+   G+G DK  + P+VGPRG+Y+GHEDTVEDV F P+SAQEFCSV
Sbjct: 260 ----SKSSGSIIKQT---GEGTDK-NESPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSV 311

Query: 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357
           GDDSCLILWDAR GT+PV KVEKAHDADLHCVDWNP DDNLILTGSADN+VR+FDRR LT
Sbjct: 312 GDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLT 371

Query: 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 417
           +NGVGSPI KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY++V KK +   R   
Sbjct: 372 ANGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSKKSD---RAAK 428

Query: 418 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE 477
            PAGLFFQHAGHRDKVVDFHWNASDPWT+VSVSDDC++TGGGGTLQIWRMSDLIYRP++E
Sbjct: 429 SPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWRMSDLIYRPEEE 488

Query: 478 VLAELEKFKAHVISCTSKP 496
           V+AELEKFK+HV++C SKP
Sbjct: 489 VVAELEKFKSHVMTCASKP 507

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of the flowering autonomous pathway which positively regulates flowering by promoting transcriptional repression of the flowering repressor FLC. May promote histone deacetylation at the FLC locus leading to the formation of repressive chromatin structures. Also negatively regulates cold-responsive genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU78|MSI5_ARATH WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/488 (73%), Positives = 405/488 (82%), Gaps = 30/488 (6%)

Query: 8   KRGRKPKPKEDKKDEPKMKESTTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPS 67
           KR RKPK   + +    +++S        +  VDD Y+ WK+L+P+LYD   NH LVWPS
Sbjct: 29  KRRRKPKSNNESQLPFLLQQS-------QKATVDDTYSQWKTLLPILYDSFVNHTLVWPS 81

Query: 68  LSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEAR 127
           LSCRWGPQLEQA  K  QRLYLSEQT+GSVPNTLVIANCE V           Q NE+A 
Sbjct: 82  LSCRWGPQLEQAGSKT-QRLYLSEQTNGSVPNTLVIANCETVN---------RQLNEKAH 131

Query: 128 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP 187
           SPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPD+LIW+ E QP+R+AVLGA +SRP
Sbjct: 132 SPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVLGAPDSRP 191

Query: 188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS 247
           DL+L GHQD+AEFALAMCPTEP+VLSGGKDKSV+LW+IQDHIT + +D   +KS GSS  
Sbjct: 192 DLLLIGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITMAGSD---SKSPGSS-- 246

Query: 248 IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 307
             KQ+   G+G+DK   GPSVGPRGIYNGH+DTVEDV FCPSSAQEFCSVGDDSCL+LWD
Sbjct: 247 -FKQT---GEGSDKTG-GPSVGPRGIYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWD 301

Query: 308 ARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367
           AR GTSP +KVEKAHDADLHCVDWNP D+NLILTGSADN+VR+FDRRNLTSNGVGSP+ K
Sbjct: 302 ARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYK 361

Query: 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427
           FEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWD ++VGKK E   R T  P GLFFQHA
Sbjct: 362 FEGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGKKSE---RATKTPDGLFFQHA 418

Query: 428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA 487
           GHRDKVVDFHW+  +PWT+VSVSD+C+S GGGGTLQIWRMSDLIYRP+DEVL ELEKFK+
Sbjct: 419 GHRDKVVDFHWSLLNPWTIVSVSDNCESIGGGGTLQIWRMSDLIYRPEDEVLTELEKFKS 478

Query: 488 HVISCTSK 495
           HV +CTSK
Sbjct: 479 HVFTCTSK 486

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q60972|RBBP4_MOUSE Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=5

 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 218/453 (48%), Gaps = 66/453 (14%)

Query: 37  QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
           +  ++++Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T 
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTS 73

Query: 95  GSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKHKTIIHPGEVNRI 146
               N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR 
Sbjct: 74  DE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRA 130

Query: 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206
           R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ    + L+  P
Sbjct: 131 RYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQKEG-YGLSWNP 187

Query: 207 T-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265
               ++LS   D ++ LW                         I   PK         +G
Sbjct: 188 NLSGHLLSASDDHTICLWD------------------------ISAVPK---------EG 214

Query: 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDA 324
             V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH A
Sbjct: 215 KVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA 274

Query: 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
           +++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP  
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHN 329

Query: 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
            ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++P
Sbjct: 330 ETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 387

Query: 444 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 476
           W + SVS+D         +Q+W+M++ IY  +D
Sbjct: 388 WVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Mus musculus (taxid: 10090)

>sp|Q09028|RBBP4_HUMAN Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3

 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 218/453 (48%), Gaps = 66/453 (14%)

Query: 37  QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
           +  ++++Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T 
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTS 73

Query: 95  GSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKHKTIIHPGEVNRI 146
               N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR 
Sbjct: 74  DE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRA 130

Query: 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206
           R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ    + L+  P
Sbjct: 131 RYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQKEG-YGLSWNP 187

Query: 207 T-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265
               ++LS   D ++ LW                         I   PK         +G
Sbjct: 188 NLSGHLLSASDDHTICLWD------------------------ISAVPK---------EG 214

Query: 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDA 324
             V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH A
Sbjct: 215 KVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA 274

Query: 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
           +++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP  
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHN 329

Query: 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
            ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++P
Sbjct: 330 ETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 387

Query: 444 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 476
           W + SVS+D         +Q+W+M++ IY  +D
Sbjct: 388 WVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Homo sapiens (taxid: 9606)

>sp|Q3MHL3|RBBP4_BOVIN Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3

 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 218/453 (48%), Gaps = 66/453 (14%)

Query: 37  QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
           +  ++++Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T 
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTS 73

Query: 95  GSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKHKTIIHPGEVNRI 146
               N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR 
Sbjct: 74  DE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRA 130

Query: 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206
           R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ    + L+  P
Sbjct: 131 RYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQKEG-YGLSWNP 187

Query: 207 T-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265
               ++LS   D ++ LW                         I   PK         +G
Sbjct: 188 NLSGHLLSASDDHTICLWD------------------------ISAVPK---------EG 214

Query: 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDA 324
             V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH A
Sbjct: 215 KVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA 274

Query: 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
           +++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP  
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHN 329

Query: 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
            ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++P
Sbjct: 330 ETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 387

Query: 444 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 476
           W + SVS+D         +Q+W+M++ IY  +D
Sbjct: 388 WVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Bos taurus (taxid: 9913)

>sp|Q9I8G9|RBBP7_CHICK Histone-binding protein RBBP7 OS=Gallus gallus GN=RBBP7 PE=1 SV=1

 Score =  211 bits (538), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 224/473 (47%), Gaps = 67/473 (14%)

Query: 25  MKESTTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR 84
           M      + T  +  + ++Y  WK   P LYD +  H L WPSL+ +W P + +   K+ 
Sbjct: 1   MASKEVLEDTVEERVISEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVSRPEGKDY 60

Query: 85  QRLYLSEQTDGS-VPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKH 134
              +L   T  S   N LV+A  ++  P     +  SQ++ E +  F         ++  
Sbjct: 61  ALHWLVLGTHTSDEQNHLVVARVQI--PNDDQFD-TSQYDSE-KGEFGGFGSVTGKIETE 116

Query: 135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH 194
             I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GH
Sbjct: 117 IKINHEGEVNRARYMPQNPYIIATKTPSADVLVFDYTKHPSKPDPSGECN--PDLRLRGH 174

Query: 195 QDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK 254
           Q            + ++LS   D +V LW I               SAG         PK
Sbjct: 175 QKEGYGLSWNSNLKGHLLSASDDHTVCLWDI---------------SAG---------PK 210

Query: 255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS- 313
                    +G  V  + I+ GH   VEDV +       F SV DD  L++WD R  T+ 
Sbjct: 211 ---------EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTS 261

Query: 314 -PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS 372
            P   V+ AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H 
Sbjct: 262 KPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHK 315

Query: 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK 432
             +  V WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K
Sbjct: 316 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAK 374

Query: 433 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ--DEVLAELE 483
           + DF WN ++PW + SVS+D         +QIW+M++ IY  +  D   AELE
Sbjct: 375 ISDFSWNPNEPWVICSVSED-------NIMQIWQMAENIYNDEEPDIAAAELE 420

Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Gallus gallus (taxid: 9031)

>sp|Q5M7K4|RBBP4_XENTR Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 217/453 (47%), Gaps = 66/453 (14%)

Query: 37  QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
           +  ++++Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T 
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTS 73

Query: 95  GSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKHKTIIHPGEVNRI 146
               N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR 
Sbjct: 74  DE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRA 130

Query: 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206
           R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ    + L+  P
Sbjct: 131 RYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQKEG-YGLSWNP 187

Query: 207 T-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265
                +LS   D ++ LW                         I   PK         +G
Sbjct: 188 NLSGNLLSASDDHTICLWD------------------------ISAVPK---------EG 214

Query: 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDA 324
             V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH A
Sbjct: 215 KVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA 274

Query: 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
           +++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP  
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHN 329

Query: 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
            ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++P
Sbjct: 330 ETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 387

Query: 444 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 476
           W + SVS+D         +Q+W+M++ IY  +D
Sbjct: 388 WVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q6INH0|RBP4B_XENLA Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-b PE=1 SV=3

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 217/453 (47%), Gaps = 66/453 (14%)

Query: 37  QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
           +  ++++Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T 
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTS 73

Query: 95  GSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKHKTIIHPGEVNRI 146
               N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR 
Sbjct: 74  DE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRA 130

Query: 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206
           R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ    + L+  P
Sbjct: 131 RYMPQNPCIIATKTPSCDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQKEG-YGLSWNP 187

Query: 207 T-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265
                +LS   D ++ LW I                           PK         +G
Sbjct: 188 NLSGNLLSASDDHTICLWDI------------------------SAVPK---------EG 214

Query: 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHDA 324
             V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH A
Sbjct: 215 KVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA 274

Query: 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
           +++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP  
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHN 329

Query: 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
            ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++P
Sbjct: 330 ETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 387

Query: 444 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 476
           W + SVS+D         +Q+W+M++ IY  +D
Sbjct: 388 WVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus laevis (taxid: 8355)

>sp|Q5RF92|RBBP4_PONAB Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 218/453 (48%), Gaps = 66/453 (14%)

Query: 37  QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
           +  +++++  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T 
Sbjct: 14  ERVINEEHKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTS 73

Query: 95  GSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKHKTIIHPGEVNRI 146
               N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR 
Sbjct: 74  DE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRA 130

Query: 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206
           R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ    + L+  P
Sbjct: 131 RYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQKEG-YGLSWNP 187

Query: 207 T-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265
               ++LS   D ++ LW                         I   PK         +G
Sbjct: 188 NLSGHLLSASDDHTICLWD------------------------ISAVPK---------EG 214

Query: 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDA 324
             V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH A
Sbjct: 215 KVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA 274

Query: 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
           +++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP  
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHN 329

Query: 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
            ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++P
Sbjct: 330 ETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 387

Query: 444 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 476
           W + SVS+D         +Q+W+M++ IY  +D
Sbjct: 388 WVICSVSED-------NIMQVWQMAENIYNDED 413

Core histone-binding subunit that may target chromatin assembly factors, chromatin remodeling factors and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the chromatin assembly factor 1 (CAF-1) complex, which is required for chromatin assembly following DNA replication and DNA repair; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex.

Pongo abelii (taxid: 9601)

>sp|Q6P315|RBBP7_XENTR Histone-binding protein RBBP7 OS=Xenopus tropicalis GN=rbbp7 PE=2 SV=1

 Score =  209 bits (533), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 147/463 (31%), Positives = 219/463 (47%), Gaps = 62/463 (13%)

Query: 25  MKESTTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR 84
           M      + T  +  ++++Y  WK   P LYD +  H L WPSL+ +W P + +   K+ 
Sbjct: 1   MANKEMFEDTVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDY 60

Query: 85  QRLYLSEQTDGS-VPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKHK 135
              +L   T  S   N LV+A  ++  P   A    S ++ E        + S  ++   
Sbjct: 61  ALHWLVLGTHTSDEQNHLVVARVQI--PNDDAQFDASHYDSEKGEFGGFGSVSGKIETEI 118

Query: 136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ 195
            I H GEVNR R +PQN  I+AT T S DVL++D    P++    G  +  PDL L GHQ
Sbjct: 119 KINHEGEVNRARYMPQNPCIIATKTPSADVLVFDYTKHPSKPDPSG--DCSPDLRLRGHQ 176

Query: 196 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP 255
                         ++LS   D +V LW I               SAG         PK 
Sbjct: 177 KEGYGLSWNSNLSGHLLSASDDHTVCLWDI---------------SAG---------PK- 211

Query: 256 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-- 313
                   +G  V  + I+ GH   VEDV +       F SV DD  L++WD R  T+  
Sbjct: 212 --------EGKVVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSK 263

Query: 314 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA 373
           P   V+ AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H  
Sbjct: 264 PSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKD 317

Query: 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 433
            +  V WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+
Sbjct: 318 EIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKI 376

Query: 434 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD 476
            DF WN ++PW + SVS+D         +QIW+M++ IY  ++
Sbjct: 377 SDFSWNPNEPWVICSVSED-------NIMQIWQMAENIYNDEE 412

Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
255546107	503	WD-repeat protein, putative [Ricinus com	0.943	0.930	0.881	0.0
224112132	502	nucleosome/chromatin assembly factor gro	0.939	0.928	0.891	0.0
356556284	508	PREDICTED: WD-40 repeat-containing prote	0.969	0.946	0.844	0.0
356530364	513	PREDICTED: WD-40 repeat-containing prote	0.969	0.937	0.832	0.0
61611729	515	FVE [Pisum sativum]	0.967	0.932	0.823	0.0
449489878	518	PREDICTED: WD-40 repeat-containing prote	0.937	0.897	0.865	0.0
449435868	512	PREDICTED: WD-40 repeat-containing prote	0.937	0.908	0.865	0.0
346229125	508	FVE protein [Glycine max]	0.967	0.944	0.840	0.0
224122490	467	nucleosome/chromatin assembly factor gro	0.935	0.993	0.882	0.0
388497218	500	unknown [Medicago truncatula]	0.949	0.942	0.827	0.0

>gi|255546107|ref|XP_002514113.1| WD-repeat protein, putative [Ricinus communis] gi|223546569|gb|EEF48067.1| WD-repeat protein, putative [Ricinus communis]

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/472 (88%), Positives = 445/472 (94%), Gaps = 4/472 (0%)

Query: 24  KMKESTTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKN 83
           KMKE   +++   QH VD+KYT WKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKN
Sbjct: 35  KMKEGKKSQQQ-QQHTVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKN 93

Query: 84  RQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEV 143
           RQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHI+QFNEEARSPFVKK+KTIIHPGEV
Sbjct: 94  RQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHIAQFNEEARSPFVKKYKTIIHPGEV 153

Query: 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA 203
           NRIRELPQN++IVATHTD PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA
Sbjct: 154 NRIRELPQNSRIVATHTDGPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA 213

Query: 204 MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 263
           MCPTEP+VLSGGKDKSVVLWSIQDHIT+SATDPATAKS GS GSIIK++   G+GND+AA
Sbjct: 214 MCPTEPFVLSGGKDKSVVLWSIQDHITASATDPATAKSPGSGGSIIKRA---GEGNDRAA 270

Query: 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD 323
           + PSVGPRGIY GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR+G+SP +KVEKAH+
Sbjct: 271 ESPSVGPRGIYQGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARIGSSPAVKVEKAHN 330

Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383
           ADLHCVDWNP D+NLI+TGSADNSVRMFDRRNLTSNGVG+P+ KFEGH AAVLCVQWSPD
Sbjct: 331 ADLHCVDWNPHDNNLIITGSADNSVRMFDRRNLTSNGVGTPVYKFEGHKAAVLCVQWSPD 390

Query: 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
           KSSVFGSSAEDGLLNIWDY+KVGKK E+  R  N PAGLFFQHAGHRDKVVDFHWNASDP
Sbjct: 391 KSSVFGSSAEDGLLNIWDYDKVGKKTERATRAPNSPAGLFFQHAGHRDKVVDFHWNASDP 450

Query: 444 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK 495
           WT+VSVSDDCD+TGGGGTLQIWRMSDLIYRP+DEVLAELEKFK+HVI CTSK
Sbjct: 451 WTIVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVIECTSK 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112132|ref|XP_002332825.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222833256|gb|EEE71733.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/478 (89%), Positives = 442/478 (92%), Gaps = 12/478 (2%)

Query: 23  PKMKESTTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYK 82
           PKMKE     + AHQH+VDDKYT WKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYK
Sbjct: 33  PKMKEG----KKAHQHSVDDKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYK 88

Query: 83  NRQRLYLSEQ----TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTII 138
           NRQRLYLSEQ    TDGSVPNTLVIANCEVVK RVAAAEHISQFNEEARSPFVKK+KTII
Sbjct: 89  NRQRLYLSEQAKILTDGSVPNTLVIANCEVVKSRVAAAEHISQFNEEARSPFVKKYKTII 148

Query: 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 198
           HPGEVNRIRELPQN+KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH DNA
Sbjct: 149 HPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHLDNA 208

Query: 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDG 258
           EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT KS GS GSIIK   K GDG
Sbjct: 209 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPAT-KSPGSGGSIIK---KAGDG 264

Query: 259 NDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV 318
           NDKA DGPSVGPRGIY GHEDTVEDV FCPSSAQEFCSVGDDSCLILWDAR GT+P IKV
Sbjct: 265 NDKATDGPSVGPRGIYQGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARDGTNPAIKV 324

Query: 319 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378
           EKAH+ADLHCVDWNP DDNLILTGSAD SV MFDRRNLTSNGVGSP+ KFEGH+AAVLCV
Sbjct: 325 EKAHNADLHCVDWNPHDDNLILTGSADTSVCMFDRRNLTSNGVGSPVYKFEGHNAAVLCV 384

Query: 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438
           QWSPDK+SVFGSSAEDGLLNIWDYEKVGK+ E+  R  N PAGLFFQHAGHRDKVVDFHW
Sbjct: 385 QWSPDKASVFGSSAEDGLLNIWDYEKVGKRSERLTRALNSPAGLFFQHAGHRDKVVDFHW 444

Query: 439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496
           NASDPWT+VSVSDDCD+TGGGGTLQIWRMSDLIYRP+DEVLAELEKFK+HV+SC SKP
Sbjct: 445 NASDPWTLVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVSCASKP 502

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556284|ref|XP_003546456.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Glycine max]

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/495 (84%), Positives = 453/495 (91%), Gaps = 14/495 (2%)

Query: 9   RGRKPKPK--------EDKKDEPKMKESTTTKRTAHQHAVDDKYTHWKSLVPVLYDWLAN 60
           RGRKPKPK        E +K + +  +    ++  HQ +VD+KYT WKSLVPVLYDWLAN
Sbjct: 17  RGRKPKPKDEHAKALKEGRKTQQQQHDQQQQQQQQHQPSVDEKYTQWKSLVPVLYDWLAN 76

Query: 61  HNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHIS 120
           HNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHIS
Sbjct: 77  HNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHIS 136

Query: 121 QFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL 180
           QFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVL+WDVE+QPNRHAVL
Sbjct: 137 QFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVL 196

Query: 181 GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK 240
           GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DHITS+ATD     
Sbjct: 197 GATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATD----- 251

Query: 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300
            + S GSIIKQ+ K G+GNDK ADGP+VGPRGIY GHEDTVEDVTFCPSSAQEFCSVGDD
Sbjct: 252 -SKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDD 310

Query: 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360
           SCLILWDARVG+SPV+KVEKAH+ADLHCVDWNP DDNLILTGSADNSVRMFDRRNLT+NG
Sbjct: 311 SCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNG 370

Query: 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 420
           VGSPI+KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  ++ + P 
Sbjct: 371 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERTGKSISSPP 430

Query: 421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA 480
           GLFFQHAGHRDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDLIYRP+DEVLA
Sbjct: 431 GLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLA 490

Query: 481 ELEKFKAHVISCTSK 495
           ELEKFK+HV++C SK
Sbjct: 491 ELEKFKSHVVACASK 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530364|ref|XP_003533752.1| PREDICTED: WD-40 repeat-containing protein MSI4-like isoform 1 [Glycine max]

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/500 (83%), Positives = 449/500 (89%), Gaps = 19/500 (3%)

Query: 9   RGRKPKPKEDKKDEPKMKESTTTKRTAH-------------QHAVDDKYTHWKSLVPVLY 55
           RGRKPKPK++     K    T  ++                Q +VD+KYT WKSLVPVLY
Sbjct: 17  RGRKPKPKDEHGKGLKEGRKTQQQQQQQQQHHHQQQQQQQDQPSVDEKYTQWKSLVPVLY 76

Query: 56  DWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAA 115
           DWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAA
Sbjct: 77  DWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAA 136

Query: 116 AEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN 175
           AEHISQFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVL+WDVE+QPN
Sbjct: 137 AEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPN 196

Query: 176 RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD 235
           RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DHITS+ATD
Sbjct: 197 RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATD 256

Query: 236 PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295
                 + S GSIIKQ+ K G+GNDK ADGP+VGPRGIY GHEDTVEDV FCPSSAQEFC
Sbjct: 257 ------SKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVAFCPSSAQEFC 310

Query: 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355
           SVGDDSCLILWDARVG+SPV+KVEKAH+ADLHCVDWNP DDNLILTGSADNSVRMFDRRN
Sbjct: 311 SVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRN 370

Query: 356 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 415
           LT+NGVGSPI+KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  ++
Sbjct: 371 LTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKS 430

Query: 416 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ 475
            + P GLFFQHAGHRDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDLIYRP+
Sbjct: 431 ISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPE 490

Query: 476 DEVLAELEKFKAHVISCTSK 495
           DEVLAELEKFK+HV++C SK
Sbjct: 491 DEVLAELEKFKSHVVACASK 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|61611729|gb|AAX47182.1| FVE [Pisum sativum]

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/503 (82%), Positives = 450/503 (89%), Gaps = 23/503 (4%)

Query: 9   RGRKPKPKEDKKDEPK--MKES--------------TTTKRTAHQHAVDDKYTHWKSLVP 52
           RGRKPKPK+D++  P   +KE+                 ++  HQ +VD+KYT WKSLVP
Sbjct: 17  RGRKPKPKDDQQQTPAKTLKEAKKAQLQQQQQQQLQQQQQQQQHQASVDEKYTQWKSLVP 76

Query: 53  VLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPR 112
           VLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVK R
Sbjct: 77  VLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTR 136

Query: 113 VAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172
           VAAAEHISQFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVLIWDVE+
Sbjct: 137 VAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVES 196

Query: 173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS 232
           QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DH+TS+
Sbjct: 197 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHVTSA 256

Query: 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292
           ATD        S GSIIK + K G+GNDK  D PSVGPRGIY+GH+DTVEDV FCPSSAQ
Sbjct: 257 ATDK-------SGGSIIKPNSKSGEGNDKTVDSPSVGPRGIYSGHDDTVEDVAFCPSSAQ 309

Query: 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352
           EFCSVGDDSCLILWDARVG+SPV+KVEKAH+ADLHCVDWNP DDNLILTGSADNSVR+FD
Sbjct: 310 EFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRLFD 369

Query: 353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 412
           RRNLTSNGVGSPI+KFE H AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+ 
Sbjct: 370 RRNLTSNGVGSPIHKFEAHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERA 429

Query: 413 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 472
            +T N P GLFFQHAGHRDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDL+Y
Sbjct: 430 GKTINSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLLY 489

Query: 473 RPQDEVLAELEKFKAHVISCTSK 495
           RP+DEVLAELEKFK+HV++C +K
Sbjct: 490 RPEDEVLAELEKFKSHVVACAAK 512

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489878|ref|XP_004158447.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Cucumis sativus]

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/468 (86%), Positives = 435/468 (92%), Gaps = 3/468 (0%)

Query: 29  TTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLY 88
           T   +   Q +VD++YT WKSLVPVLYDW ANHNLVWPSLSCRWGPQLEQATYKNRQRLY
Sbjct: 54  TKKMKAQQQPSVDERYTQWKSLVPVLYDWFANHNLVWPSLSCRWGPQLEQATYKNRQRLY 113

Query: 89  LSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRE 148
           LSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKK+KTIIHPGEVNRIRE
Sbjct: 114 LSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRE 173

Query: 149 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 208
           LPQN++IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ+NAEFALAMCPTE
Sbjct: 174 LPQNSRIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQENAEFALAMCPTE 233

Query: 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 268
           PYVLSGGKDK VVLWSIQDHIT+SATD   +KS GS GSIIK   KPG+ NDKA+DGPS+
Sbjct: 234 PYVLSGGKDKLVVLWSIQDHITTSATDAGASKSPGSGGSIIK---KPGEANDKASDGPSI 290

Query: 269 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC 328
           GPRG+Y+GHEDTVEDVTFCPS+AQEFCSVGDDSCLILWDAR G+SP +KVEKAH+ADLHC
Sbjct: 291 GPRGVYHGHEDTVEDVTFCPSNAQEFCSVGDDSCLILWDARTGSSPAVKVEKAHNADLHC 350

Query: 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 388
           VDWNP DDNLI+TGSADNS+R+FDRRNLTSNGVGSPI KFEGH AAVLCVQWSPDKSSVF
Sbjct: 351 VDWNPHDDNLIITGSADNSIRLFDRRNLTSNGVGSPIYKFEGHKAAVLCVQWSPDKSSVF 410

Query: 389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448
           GSSAEDGLLNIWDY+KVGKK E+  RT   P GLFFQHAGHRDKVVDFHWNA+DPWTVVS
Sbjct: 411 GSSAEDGLLNIWDYDKVGKKTERATRTPAAPPGLFFQHAGHRDKVVDFHWNAADPWTVVS 470

Query: 449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496
           VSDDCD+TGGGGTLQIWRMSDLIYRP++EVLAELEKFK+HVI C +KP
Sbjct: 471 VSDDCDTTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVIECAAKP 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435868|ref|XP_004135716.1| PREDICTED: WD-40 repeat-containing protein MSI4-like [Cucumis sativus]

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/468 (86%), Positives = 435/468 (92%), Gaps = 3/468 (0%)

Query: 29  TTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLY 88
           T   +   Q +VD++YT WKSLVPVLYDW ANHNLVWPSLSCRWGPQLEQATYKNRQRLY
Sbjct: 48  TKKMKAQQQPSVDERYTQWKSLVPVLYDWFANHNLVWPSLSCRWGPQLEQATYKNRQRLY 107

Query: 89  LSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRE 148
           LSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKK+KTIIHPGEVNRIRE
Sbjct: 108 LSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRE 167

Query: 149 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE 208
           LPQN++IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ+NAEFALAMCPTE
Sbjct: 168 LPQNSRIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQENAEFALAMCPTE 227

Query: 209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV 268
           PYVLSGGKDK VVLWSIQDHIT+SATD   +KS GS GSIIK   KPG+ NDKA+DGPS+
Sbjct: 228 PYVLSGGKDKLVVLWSIQDHITTSATDAGASKSPGSGGSIIK---KPGEANDKASDGPSI 284

Query: 269 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC 328
           GPRG+Y+GHEDTVEDVTFCPS+AQEFCSVGDDSCLILWDAR G+SP +KVEKAH+ADLHC
Sbjct: 285 GPRGVYHGHEDTVEDVTFCPSNAQEFCSVGDDSCLILWDARTGSSPAVKVEKAHNADLHC 344

Query: 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 388
           VDWNP DDNLI+TGSADNS+R+FDRRNLTSNGVGSPI KFEGH AAVLCVQWSPDKSSVF
Sbjct: 345 VDWNPHDDNLIITGSADNSIRLFDRRNLTSNGVGSPIYKFEGHKAAVLCVQWSPDKSSVF 404

Query: 389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448
           GSSAEDGLLNIWDY+KVGKK E+  RT   P GLFFQHAGHRDKVVDFHWNA+DPWTVVS
Sbjct: 405 GSSAEDGLLNIWDYDKVGKKTERATRTPAAPPGLFFQHAGHRDKVVDFHWNAADPWTVVS 464

Query: 449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496
           VSDDCD+TGGGGTLQIWRMSDLIYRP++EVLAELEKFK+HVI C +KP
Sbjct: 465 VSDDCDTTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVIECAAKP 512

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346229125|gb|AEO21436.1| FVE protein [Glycine max]

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/494 (84%), Positives = 450/494 (91%), Gaps = 14/494 (2%)

Query: 10  GRKPKPK--------EDKKDEPKMKESTTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANH 61
           GRKPKPK        E +K + +  +    ++  HQ +VD+KYT WKSLVPVLYDWLANH
Sbjct: 18  GRKPKPKDEHAKALKEGRKTQQQQHDQQQQQQQQHQPSVDEKYTQWKSLVPVLYDWLANH 77

Query: 62  NLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQ 121
           NLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQ
Sbjct: 78  NLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQ 137

Query: 122 FNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLG 181
           FNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVL+WDVE+QPNRHAVLG
Sbjct: 138 FNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVLG 197

Query: 182 ATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKS 241
           ATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK+VVLWSI+DHITS+ATD      
Sbjct: 198 ATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATD------ 251

Query: 242 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS 301
           + S GSIIKQ+ K G+GNDK ADGP+VGPRGIY GHEDTVEDVTFCPSSAQEFCSVGDDS
Sbjct: 252 SKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDS 311

Query: 302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV 361
           C ILWDARVG+SPV+KVEKAH+ADLHCVDWNP DDNLILT SADNSVRMFDRRNLT+NGV
Sbjct: 312 CPILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTESADNSVRMFDRRNLTTNGV 371

Query: 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG 421
           GSPI+KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  ++ + P G
Sbjct: 372 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERTGKSISSPPG 431

Query: 422 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE 481
           LFFQHAGHRDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDLIYRP+DEVLAE
Sbjct: 432 LFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAE 491

Query: 482 LEKFKAHVISCTSK 495
           LEKFK+HV++C SK
Sbjct: 492 LEKFKSHVVACASK 505

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122490|ref|XP_002330494.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222872428|gb|EEF09559.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/475 (88%), Positives = 436/475 (91%), Gaps = 11/475 (2%)

Query: 25  MKESTTTKRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR 84
           MKE     R A Q ++DDKYT WKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR
Sbjct: 1   MKEG----RKAQQPSIDDKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR 56

Query: 85  QRLYLSEQ---TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPG 141
           QRLYLSEQ   TDGSVPNTLVIANC+VVK RVAAAEHISQFNEEARSPFVKK+KTIIHPG
Sbjct: 57  QRLYLSEQANFTDGSVPNTLVIANCDVVKSRVAAAEHISQFNEEARSPFVKKYKTIIHPG 116

Query: 142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA 201
           EVNRIRELPQN+KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA
Sbjct: 117 EVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA 176

Query: 202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDK 261
           LAMCPTEPYVLSGGKDK VVLWSIQDHITSSA+DPAT KS GS GSIIK   K GDG+DK
Sbjct: 177 LAMCPTEPYVLSGGKDKLVVLWSIQDHITSSASDPAT-KSPGSGGSIIK---KTGDGSDK 232

Query: 262 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 321
           A DGPSVGPRGIY GHEDTVEDV FCPSSAQEFCSVGDDSCLILWDAR GTSP IKVE+A
Sbjct: 233 ATDGPSVGPRGIYQGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARAGTSPAIKVERA 292

Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
           H+ADLHCVDWNP DDNLILTGSAD SV MFDRRNLTSNGVG P+ KFEGH AAVLCVQWS
Sbjct: 293 HNADLHCVDWNPQDDNLILTGSADTSVCMFDRRNLTSNGVGLPVYKFEGHKAAVLCVQWS 352

Query: 382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441
           PDK+SVFGSSAEDGLLNIWDYEKVGKK E+  R  + PAGLFFQHAGHRDKVVDFHWNAS
Sbjct: 353 PDKASVFGSSAEDGLLNIWDYEKVGKKTERPTRAPSSPAGLFFQHAGHRDKVVDFHWNAS 412

Query: 442 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496
           DPWTVVSVSDDCD+TGGGGTLQIWRMSDLIYRP+DEVLAELEKFK+HV+SC SKP
Sbjct: 413 DPWTVVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVSCASKP 467

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497218|gb|AFK36675.1| unknown [Medicago truncatula]

 Score =  850 bits (2195), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/498 (82%), Positives = 444/498 (89%), Gaps = 27/498 (5%)

Query: 9   RGRKPKPKEDKKDEPKM----KESTTTKRTAHQH-------AVDDKYTHWKSLVPVLYDW 57
           RGRKPKPKEDK++EP      +ES   K+    H       +VD+KY+ WKSLVPVLYDW
Sbjct: 16  RGRKPKPKEDKREEPSQVKSPRESKKEKQQQQLHQQQQQQASVDEKYSQWKSLVPVLYDW 75

Query: 58  LANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAE 117
           LANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVK RVAAAE
Sbjct: 76  LANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAE 135

Query: 118 HISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH 177
           HISQFNEEARSPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPDVLIWDVE+QPNRH
Sbjct: 136 HISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRH 195

Query: 178 AVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA 237
           AVLGATNSRPDLILTGHQDNAEFALAMCPT+PYVLSGGKDK+VVLWSI+DHITS+ATD  
Sbjct: 196 AVLGATNSRPDLILTGHQDNAEFALAMCPTQPYVLSGGKDKTVVLWSIEDHITSAATD-- 253

Query: 238 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV 297
              S  S GSI            K AD P+VGPRGIY+GHEDTVEDV FCPSSAQEFCSV
Sbjct: 254 ---SNKSGGSIA-----------KTADSPTVGPRGIYSGHEDTVEDVAFCPSSAQEFCSV 299

Query: 298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT 357
           GDDSCLILWDARVG+SPV+KVEKAHDADLHCVDWNP DDNLILTGSADNS+RMFDRRNLT
Sbjct: 300 GDDSCLILWDARVGSSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSIRMFDRRNLT 359

Query: 358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN 417
           SNGVGSPI+KFE H AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK+E+  +T N
Sbjct: 360 SNGVGSPIHKFEAHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERAGKTIN 419

Query: 418 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE 477
           +P GLFFQHAGHRDKVVDFHWNA DPWT+VSVSDDC+STGGGGTLQIWRMSDL+YRP+DE
Sbjct: 420 FPPGLFFQHAGHRDKVVDFHWNAHDPWTLVSVSDDCESTGGGGTLQIWRMSDLLYRPEDE 479

Query: 478 VLAELEKFKAHVISCTSK 495
           VLAELEKFK+HV++C +K
Sbjct: 480 VLAELEKFKSHVVACAAK 497

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
TAIR|locus:2050372	507	FVE [Arabidopsis thaliana (tax	0.911	0.891	0.806	1.5e-207
TAIR|locus:2134408	487	NFC5 "AT4G29730" [Arabidopsis	0.745	0.759	0.744	1.2e-154
UNIPROTKB|F2Z4M0	425	RBBP4 "Histone-binding protein	0.399	0.465	0.356	2.6e-55
UNIPROTKB|Q3MHL3	425	RBBP4 "Histone-binding protein	0.399	0.465	0.356	2.6e-55
UNIPROTKB|E2QXR8	425	RBBP4 "Uncharacterized protein	0.399	0.465	0.356	2.6e-55
UNIPROTKB|Q09028	425	RBBP4 "Histone-binding protein	0.399	0.465	0.356	2.6e-55
MGI|MGI:1194912	425	Rbbp4 "retinoblastoma binding	0.399	0.465	0.356	2.6e-55
RGD|1593768	425	Rbbp4 "retinoblastoma binding	0.399	0.465	0.356	2.6e-55
ZFIN|ZDB-GENE-030131-445	444	rbb4 "retinoblastoma binding p	0.423	0.472	0.348	3.3e-55
UNIPROTKB|Q5M7K4	425	rbbp4 "Histone-binding protein	0.399	0.465	0.356	6.9e-55

TAIR|locus:2050372 FVE [Arabidopsis thaliana (taxid:3702)]

 Score = 2007 (711.6 bits), Expect = 1.5e-207, P = 1.5e-207
 Identities = 375/465 (80%), Positives = 408/465 (87%)

Query:    32 KRTAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSE 91
             K+T    +VD+KY+ WK LVP+LYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSE
Sbjct:    56 KKTQQSPSVDEKYSQWKGLVPILYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSE 115

Query:    92 QTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQ 151
             QTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKK+KTIIHPGEVNRIRELPQ
Sbjct:   116 QTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQ 175

Query:   152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV 211
             N+KIVATHTDSPDVLIWDVE QPNRHAVLGA NSRPDLILTGHQDNAEFALAMCPTEP+V
Sbjct:   176 NSKIVATHTDSPDVLIWDVETQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPFV 235

Query:   212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR 271
             LSGGKDKSVVLWSIQDHIT+  TD      + SSGSIIKQ+   G+G DK  + P+VGPR
Sbjct:   236 LSGGKDKSVVLWSIQDHITTIGTD------SKSSGSIIKQT---GEGTDKN-ESPTVGPR 285

Query:   272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331
             G+Y+GHEDTVEDV F P+SAQEFCSVGDDSCLILWDAR GT+PV KVEKAHDADLHCVDW
Sbjct:   286 GVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDW 345

Query:   332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 391
             NP DDNLILTGSADN+VR+FDRR LT+NGVGSPI KFEGH AAVLCVQWSPDKSSVFGSS
Sbjct:   346 NPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSS 405

Query:   392 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXX 451
             AEDGLLNIWDY++V KK ++  ++   PAGLFFQHAGHRDKVVDFHWNASDPW       
Sbjct:   406 AEDGLLNIWDYDRVSKKSDRAAKS---PAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSD 462

Query:   452 XXXXXXXXXXLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP 496
                       LQIWRMSDLIYRP++EV+AELEKFK+HV++C SKP
Sbjct:   463 DCETTGGGGTLQIWRMSDLIYRPEEEVVAELEKFKSHVMTCASKP 507

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006281 "DNA repair" evidence=IMP

GO:0010224 "response to UV-B" evidence=IEP

GO:0046872 "metal ion binding" evidence=IDA

TAIR|locus:2134408 NFC5 "AT4G29730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1508 (535.9 bits), Expect = 1.2e-154, P = 1.2e-154
 Identities = 286/384 (74%), Positives = 322/384 (83%)

Query:   113 VAAAEHIS-QFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE 171
             +A  E ++ Q NE+A SPFVKK+KTIIHPGEVNRIRELPQN+KIVATHTDSPD+LIW+ E
Sbjct:   116 IANCETVNRQLNEKAHSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTE 175

Query:   172 AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS 231
              QP+R+AVLGA +SRPDL+L GHQD+AEFALAMCPTEP+VLSGGKDKSV+LW+IQDHIT 
Sbjct:   176 TQPDRYAVLGAPDSRPDLLLIGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITM 235

Query:   232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA 291
             + +D   +KS GSS    KQ+   G+G+DK   GPSVGPRGIYNGH+DTVEDV FCPSSA
Sbjct:   236 AGSD---SKSPGSS---FKQT---GEGSDKTG-GPSVGPRGIYNGHKDTVEDVAFCPSSA 285

Query:   292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF 351
             QEFCSVGDDSCL+LWDAR GTSP +KVEKAHDADLHCVDWNP D+NLILTGSADN+VR+F
Sbjct:   286 QEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVF 345

Query:   352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ 411
             DRRNLTSNGVGSP+ KFEGH AAVLCVQWSPDKSSVFGSSAEDGLLNIWD ++VGKK E 
Sbjct:   346 DRRNLTSNGVGSPVYKFEGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGKKSE- 404

Query:   412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLI 471
               R T  P GLFFQHAGHRDKVVDFHW+  +PW                 LQIWRMSDLI
Sbjct:   405 --RATKTPDGLFFQHAGHRDKVVDFHWSLLNPWTIVSVSDNCESIGGGGTLQIWRMSDLI 462

Query:   472 YRPQDEVLAELEKFKAHVISCTSK 495
             YRP+DEVL ELEKFK+HV +CTSK
Sbjct:   463 YRPEDEVLTELEKFKSHVFTCTSK 486

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|F2Z4M0 RBBP4 "Histone-binding protein RBBP4" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 321
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 440
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   441 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 476
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

UNIPROTKB|Q3MHL3 RBBP4 "Histone-binding protein RBBP4" [Bos taurus (taxid:9913)]

 Score = 344 (126.2 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 321
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 440
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   441 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 476
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|E2QXR8 RBBP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 344 (126.2 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 321
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 440
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   441 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 476
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0033186 "CAF-1 complex" evidence=IEA

GO:0031497 "chromatin assembly" evidence=IEA

GO:0016589 "NURF complex" evidence=IEA

GO:0016581 "NuRD complex" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

UNIPROTKB|Q09028 RBBP4 "Histone-binding protein RBBP4" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 321
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 440
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   441 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 476
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0006260 "DNA replication" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016581 "NuRD complex" evidence=NAS;IDA

GO:0016589 "NURF complex" evidence=IDA

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0033186 "CAF-1 complex" evidence=IDA

GO:0031497 "chromatin assembly" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006334 "nucleosome assembly" evidence=TAS

GO:0034080 "CENP-A containing nucleosome assembly at centromere" evidence=TAS

GO:0016580 "Sin3 complex" evidence=NAS

GO:0042393 "histone binding" evidence=NAS

GO:0042826 "histone deacetylase binding" evidence=IPI

MGI|MGI:1194912 Rbbp4 "retinoblastoma binding protein 4" [Mus musculus (taxid:10090)]

 Score = 344 (126.2 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 321
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 440
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   441 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 476
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006260 "DNA replication" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=ISO;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016581 "NuRD complex" evidence=ISO;IDA

GO:0016589 "NURF complex" evidence=ISO

GO:0031497 "chromatin assembly" evidence=ISO

GO:0033186 "CAF-1 complex" evidence=ISO

GO:0035098 "ESC/E(Z) complex" evidence=ISO;IDA

GO:0042826 "histone deacetylase binding" evidence=ISO

RGD|1593768 Rbbp4 "retinoblastoma binding protein 4" [Rattus norvegicus (taxid:10116)]

 Score = 344 (126.2 bits), Expect = 2.6e-55, Sum P(2) = 2.6e-55
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 321
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 440
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   441 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 476
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0005634 "nucleus" evidence=ISO

GO:0006338 "chromatin remodeling" evidence=IEA;ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA;ISO

GO:0016581 "NuRD complex" evidence=IEA;ISO

GO:0016589 "NURF complex" evidence=IEA;ISO

GO:0031497 "chromatin assembly" evidence=IEA;ISO

GO:0033186 "CAF-1 complex" evidence=IEA;ISO

GO:0035098 "ESC/E(Z) complex" evidence=IEA;ISO

GO:0042826 "histone deacetylase binding" evidence=IEA;ISO

ZFIN|ZDB-GENE-030131-445 rbb4 "retinoblastoma binding protein 4" [Danio rerio (taxid:7955)]

 Score = 356 (130.4 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
 Identities = 79/227 (34%), Positives = 118/227 (51%)

Query:   264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAH 322
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH
Sbjct:   213 EGKIVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHAVDAH 272

Query:   323 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 382
              A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP
Sbjct:   273 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSP 327

Query:   383 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNAS 441
                ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN +
Sbjct:   328 HNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPN 385

Query:   442 DPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD-EVLAELEKFKA 487
             +PW                 +Q+W+M++ IY  +D E  A+ EK+ +
Sbjct:   386 EPWVICSVSEDNI-------MQVWQMAENIYNDEDPEGAADTEKYNS 425

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0031497 "chromatin assembly" evidence=ISS

GO:0008094 "DNA-dependent ATPase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006338 "chromatin remodeling" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0006260 "DNA replication" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5M7K4 rbbp4 "Histone-binding protein RBBP4" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 344 (126.2 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
 Identities = 77/216 (35%), Positives = 114/216 (52%)

Query:   264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TS-PVIKVEKA 321
             +G  V  + I+ GH   VEDV++       F SV DD  L++WD R   TS P   V+ A
Sbjct:   213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-A 271

Query:   322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
             H A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWS
Sbjct:   272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWS 326

Query:   382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNA 440
             P   ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN 
Sbjct:   327 PHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNP 384

Query:   441 SDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 476
             ++PW                 +Q+W+M++ IY  +D
Sbjct:   385 NEPWVICSVSEDNI-------MQVWQMAENIYNDED 413

GO:0031497 "chromatin assembly" evidence=ISS

GO:0033186 "CAF-1 complex" evidence=ISS

GO:0035098 "ESC/E(Z) complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54SD4	RBBD_DICDI	No assigned EC number	0.3110	0.8024	0.9408	yes	no
Q9SU78	MSI5_ARATH	No assigned EC number	0.7336	0.9233	0.9404	no	no
Q7ZTY4	RBBP7_DANRE	No assigned EC number	0.3164	0.8205	0.9553	yes	no
Q9I8G9	RBBP7_CHICK	No assigned EC number	0.3234	0.8185	0.9575	yes	no
O22607	MSI4_ARATH	No assigned EC number	0.8156	0.9616	0.9408	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NFC905 nucleosome/chromatin assembly factor group (502 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	496
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-19
pfam12265	73	pfam12265, CAF1C_H4-bd, Histone-binding protein RB	3e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-06
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-06
smart00320	40	smart00320, WD40, WD40 repeats	5e-06
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  112 bits (283), Expect = 4e-28
 Identities = 63/267 (23%), Positives = 108/267 (40%), Gaps = 31/267 (11%)

Query: 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 198
           H G V  +      T + +  +D   + +WD+E                   LTGH    
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDK-TIRLWDLETGECVR------------TLTGHTS-Y 95

Query: 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATDPATAKSAGSSGSIIKQSPK 254
             ++A  P    + S  +DK++ +W ++           TD   + +    G+ +  S +
Sbjct: 96  VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ 155

Query: 255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 314
             DG  K  D  +        GH   V  V F P   ++  S   D  + LWD   G   
Sbjct: 156 --DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK-- 210

Query: 315 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374
            +   + H+  ++ V ++P D  L+ +GS D ++R++D R       G  +    GH+ +
Sbjct: 211 CLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRT------GECVQTLSGHTNS 263

Query: 375 VLCVQWSPDKSSVFGSSAEDGLLNIWD 401
           V  + WSPD   +  S + DG + IWD
Sbjct: 264 VTSLAWSPDGKRLA-SGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  104 bits (261), Expect = 4e-25
 Identities = 74/337 (21%), Positives = 116/337 (34%), Gaps = 64/337 (18%)

Query: 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 198
           H G V  +   P    +     D   + +WD+E                   L GH    
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDG-TIKVWDLE------------TGELLRTLKGHTGPV 54

Query: 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI--IKQSPKP- 255
               A      Y+ SG  DK++ LW ++       T        G +  +  +  SP   
Sbjct: 55  RDVAA-SADGTYLASGSSDKTIRLWDLE-------TGECVRTLTGHTSYVSSVAFSPDGR 106

Query: 256 ---GDGNDKAA---DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 309
                  DK     D  +        GH D V  V F P       S   D  + LWD R
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS-SQDGTIKLWDLR 165

Query: 310 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369
             T   +     H  +++ V ++P D   +L+ S+D +++++D         G  +    
Sbjct: 166 --TGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST------GKCLGTLR 216

Query: 370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH 429
           GH   V  V +SPD   +  S +EDG + +WD    G+ V+                 GH
Sbjct: 217 GHENGVNSVAFSPDGYLLA-SGSEDGTIRVWDLRT-GECVQTLS--------------GH 260

Query: 430 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR 466
            + V    W+      + S S D        T++IW 
Sbjct: 261 TNSVTSLAWSPDGKR-LASGSADG-------TIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 58/281 (20%), Positives = 98/281 (34%), Gaps = 79/281 (28%)

Query: 191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 250
           L GH       +A  P    + +G  D ++ +W ++                   G +++
Sbjct: 5   LKGHTGGV-TCVAFSPDGKLLATGSGDGTIKVWDLET------------------GELLR 45

Query: 251 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 310
                                    GH   V DV           S   D  + LWD  +
Sbjct: 46  T----------------------LKGHTGPVRDVAASADG-TYLASGSSDKTIRLWD--L 80

Query: 311 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370
            T   ++    H + +  V ++P D  ++ + S D +++++D         G  +    G
Sbjct: 81  ETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVET------GKCLTTLRG 133

Query: 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 430
           H+  V  V +SPD + V  SS  DG + +WD    GK V                  GH 
Sbjct: 134 HTDWVNSVAFSPDGTFVASSSQ-DGTIKLWDLRT-GKCVA--------------TLTGHT 177

Query: 431 DKV--VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469
            +V  V F     D   ++S S D       GT+++W +S 
Sbjct: 178 GEVNSVAFS---PDGEKLLSSSSD-------GTIKLWDLST 208

Length = 289

>gnl|CDD|221499 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit C of CAF1 complex

 Score = 81.5 bits (202), Expect = 3e-19
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 41  DDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKN--RQRLYLSEQTDGSVP 98
           +++Y  WK   P LYD L  H L WPSLS  W P L +   +    QRL L  QT G   
Sbjct: 1   NEEYELWKKNDPFLYDMLHTHALEWPSLSFDWLPDLLKGDNRYPHTQRLLLGTQTSGQEQ 60

Query: 99  NTLVIANCEVVKP 111
           N L++A   +   
Sbjct: 61  NYLLVAKVSLPSK 73

The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six. Length = 73

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.9 bits (185), Expect = 1e-14
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 30/201 (14%)

Query: 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 330
             +  GHED++  + F P   +   S   D  + LWD   G   +  +E  HD+ +  + 
Sbjct: 58  SLLLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 331 WNPLDDNLILT--GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 388
            +  D N IL    S D +V+++D      +  G  I   EGHS +V  + +SPD   + 
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWD-----LSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171

Query: 389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS 448
             S+ DG + +WD       +  G   +          AGH D V    ++      + S
Sbjct: 172 SGSSLDGTIKLWD-------LRTGKPLSTL--------AGHTDPVSSLAFSPDGGLLIAS 216

Query: 449 VSDDCDSTGGGGTLQIWRMSD 469
            S D       GT+++W +S 
Sbjct: 217 GSSD-------GTIRLWDLST 230

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 75.1 bits (183), Expect = 2e-14
 Identities = 72/361 (19%), Positives = 118/361 (32%), Gaps = 69/361 (19%)

Query: 127 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR 186
            +P         H   V  +   P    + +  +    + +WD+               +
Sbjct: 142 STPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR------------TGK 189

Query: 187 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ--------------DHITSS 232
           P   L GH D              + SG  D ++ LW +                 ++S 
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSF 249

Query: 233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ 292
           + D +   S  S G+I           D  +    +      +GH  +V  V F P    
Sbjct: 250 SPDGSLLASGSSDGTIR--------LWDLRSSSSLLR---TLSGHSSSVLSVAFSPDGKL 298

Query: 293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352
              S   D  + LWD   G        K H+  +  + ++P    L+  GS D ++R++D
Sbjct: 299 LA-SGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Query: 353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG 412
            R       G P+   EGHS  VL V +SPD   V  S + DG + +WD           
Sbjct: 358 LRT------GKPLKTLEGHS-NVLSVSFSPDG-RVVSSGSTDGTVRLWDLSTGSLLR--- 406

Query: 413 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 472
                            R   +DF     D  ++ S S D        T+++W +   + 
Sbjct: 407 ----------NLDGHTSRVTSLDFS---PDGKSLASGSSD-------NTIRLWDLKTSLK 446

Query: 473 R 473
            
Sbjct: 447 S 447

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 31/150 (20%)

Query: 316 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375
            +  K H   + CV ++P D  L+ TGS D +++++D         G  +   +GH+  V
Sbjct: 2   RRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLET------GELLRTLKGHTGPV 54

Query: 376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD 435
             V  S D + +  S + D  + +WD E  G+ V    RT            GH   V  
Sbjct: 55  RDVAASADGTYLA-SGSSDKTIRLWDLET-GECV----RT----------LTGHTSYVSS 98

Query: 436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIW 465
             ++      + S S D        T+++W
Sbjct: 99  VAFSPDGRI-LSSSSRD-------KTIKVW 120

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 30/129 (23%)

Query: 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427
            +GH+  V CV +SPD   +  + + DG + +WD E            T           
Sbjct: 5   LKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLE------TGELLRTLK--------- 48

Query: 428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA 487
           GH   V D   +A   + + S S D        T+++W +         E +  L    +
Sbjct: 49  GHTGPVRDVAASADGTY-LASGSSD-------KTIRLWDLET------GECVRTLTGHTS 94

Query: 488 HVISCTSKP 496
           +V S    P
Sbjct: 95  YVSSVAFSP 103

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 50/265 (18%), Positives = 98/265 (36%), Gaps = 40/265 (15%)

Query: 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVL--------GATNSRPDLI 190
           H   V+ +   P    ++A+ +    + +WD+       + L         + +    L+
Sbjct: 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLL 256

Query: 191 LTGHQDNAE----------------------FALAMCPTEPYVLSGGKDKSVVLWSIQDH 228
            +G  D                          ++A  P    + SG  D +V LW ++  
Sbjct: 257 ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316

Query: 229 -----ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED 283
                +T    +   +  + S    +  S    DG  +  D  +  P     GH   V  
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLS 375

Query: 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 343
           V+F P   +   S   D  + LWD   G+  +++    H + +  +D++P D   + +GS
Sbjct: 376 VSFSPDG-RVVSSGSTDGTVRLWDLSTGS--LLRNLDGHTSRVTSLDFSP-DGKSLASGS 431

Query: 344 ADNSVRMFDRRNLTSNGVGSPINKF 368
           +DN++R++D +    +   SP  K 
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDGKV 456

Length = 466

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 15/152 (9%)

Query: 329 VDWNPLDDNLILTGSADNSVRMFD--RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 386
           V +NP D   + T S D ++  +      LT N +  PI   +GH+  V  V + P   +
Sbjct: 81  VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-ISDPIVHLQGHTKKVGIVSFHPSAMN 139

Query: 387 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG------HRDKVVDFHWNA 440
           V  S+  D ++N+WD E+ GK VE     ++    L +   G       +DK +    N 
Sbjct: 140 VLASAGADMVVNVWDVER-GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL----NI 194

Query: 441 SDPWTVVSVSDDCDSTGGGGTLQIW-RMSDLI 471
            DP     VS             +W +  DLI
Sbjct: 195 IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226

Length = 493

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
           G  +   +GH+  V  V +SPD  ++  S ++DG + +WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
           G  +   +GH+  V  V +SPD      S ++DG + +WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 314 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR--NLTSNGVGSPINKFEGH 371
           PVIK+ K H + +  + +NP    ++ +GS D ++R+++    + +   +  P    +GH
Sbjct: 66  PVIKL-KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124

Query: 372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403
              +  + W+P    +  SS  D  +NIWD E
Sbjct: 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE 156

Length = 568

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 315 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352
           +++  K H   +  V ++P D NL+ +GS D +VR++D
Sbjct: 3   LLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD 335
           GH   V  V+F PS+     S G D  + +WD   G +  ++V K H   +  ++WN LD
Sbjct: 123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--VEVIKCHSDQITSLEWN-LD 179

Query: 336 DNLILTGSADNSVRMFDRRNLT 357
            +L+ T S D  + + D R+ T
Sbjct: 180 GSLLCTTSKDKKLNIIDPRDGT 201

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352
           +  ++K  K H   +  V ++P D   + +GS D +++++D
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 307
                 GH   V  V F P   +   S  DD  + LWD
Sbjct: 4   LLKTLKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0302	440	consensus Ribosome Assembly protein [General funct	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
PTZ00421	493	coronin; Provisional	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.98
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.98
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.98
KOG0641	350	consensus WD40 repeat protein [General function pr	99.98
PTZ00420	568	coronin; Provisional	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0646	476	consensus WD40 repeat protein [General function pr	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0641	350	consensus WD40 repeat protein [General function pr	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG4227	609	consensus WD40 repeat protein [General function pr	99.9
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.89
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.88
KOG1188	376	consensus WD40 repeat protein [General function pr	99.88
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.87
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.87
KOG1539	910	consensus WD repeat protein [General function pred	99.87
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.86
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG2048	691	consensus WD40 repeat protein [General function pr	99.84
KOG1334	559	consensus WD40 repeat protein [General function pr	99.83
KOG2055	514	consensus WD40 repeat protein [General function pr	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG1310	758	consensus WD40 repeat protein [General function pr	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.79
KOG1273	405	consensus WD40 repeat protein [General function pr	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.79
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.77
KOG1310	758	consensus WD40 repeat protein [General function pr	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
COG2319	466	FOG: WD40 repeat [General function prediction only	99.76
PRK01742	429	tolB translocation protein TolB; Provisional	99.76
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.75
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.74
PF12265	74	CAF1C_H4-bd: Histone-binding protein RBBP4 or subu	99.74
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.73
PRK01742	429	tolB translocation protein TolB; Provisional	99.72
KOG0649	325	consensus WD40 repeat protein [General function pr	99.71
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.7
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.7
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
KOG2139	445	consensus WD40 repeat protein [General function pr	99.67
PRK03629	429	tolB translocation protein TolB; Provisional	99.67
KOG1963	792	consensus WD40 repeat protein [General function pr	99.67
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.66
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.65
PRK04922	433	tolB translocation protein TolB; Provisional	99.64
PRK11028	330	6-phosphogluconolactonase; Provisional	99.63
PRK05137	435	tolB translocation protein TolB; Provisional	99.63
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.63
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.61
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.59
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.59
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.58
PRK03629	429	tolB translocation protein TolB; Provisional	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.54
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.54
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.54
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.53
PRK05137	435	tolB translocation protein TolB; Provisional	99.53
KOG1334	559	consensus WD40 repeat protein [General function pr	99.52
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.52
PRK02889	427	tolB translocation protein TolB; Provisional	99.52
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.51
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.47
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.47
PRK04792	448	tolB translocation protein TolB; Provisional	99.47
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.47
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.47
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.46
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.46
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.46
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.42
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.42
KOG4547	541	consensus WD40 repeat-containing protein [General	99.42
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.41
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.4
KOG4547	541	consensus WD40 repeat-containing protein [General	99.4
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.38
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.38
KOG2321	703	consensus WD40 repeat protein [General function pr	99.37
KOG2315	566	consensus Predicted translation initiation factor	99.37
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.36
PRK04792	448	tolB translocation protein TolB; Provisional	99.35
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.33
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.33
PRK00178	430	tolB translocation protein TolB; Provisional	99.32
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.31
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.3
PRK01029	428	tolB translocation protein TolB; Provisional	99.25
KOG2314	698	consensus Translation initiation factor 3, subunit	99.25
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.25
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.23
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.21
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.17
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.17
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.16
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.13
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.11
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.08
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.03
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.02
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.0
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.0
KOG2695	425	consensus WD40 repeat protein [General function pr	98.98
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.98
KOG2314	698	consensus Translation initiation factor 3, subunit	98.97
KOG2315	566	consensus Predicted translation initiation factor	98.95
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.92
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.92
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.91
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.9
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.89
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.89
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.86
PRK04043	419	tolB translocation protein TolB; Provisional	98.83
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.83
PRK04043	419	tolB translocation protein TolB; Provisional	98.82
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.82
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.81
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.76
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.75
COG4946	668	Uncharacterized protein related to the periplasmic	98.73
KOG2695	425	consensus WD40 repeat protein [General function pr	98.71
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.7
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.69
COG4946	668	Uncharacterized protein related to the periplasmic	98.69
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.66
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.66
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.66
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.62
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.6
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.6
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.59
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.58
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.56
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.54
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.53
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.53
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.45
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.42
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.42
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.42
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.4
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.37
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.33
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.3
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.27
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.25
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.24
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.1
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.08
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.07
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.98
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.93
KOG2395	644	consensus Protein involved in vacuole import and d	97.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.82
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.67
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.65
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.6
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.6
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.58
PRK02888	635	nitrous-oxide reductase; Validated	97.48
KOG3621	726	consensus WD40 repeat-containing protein [General	97.48
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.46
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.45
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.43
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.4
KOG3621	726	consensus WD40 repeat-containing protein [General	97.39
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.3
KOG2444	238	consensus WD40 repeat protein [General function pr	97.29
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.28
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.26
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.23
PRK02888	635	nitrous-oxide reductase; Validated	97.22
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.21
COG3391	381	Uncharacterized conserved protein [Function unknow	97.2
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.17
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.09
COG3391	381	Uncharacterized conserved protein [Function unknow	97.08
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.08
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.07
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.07
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.06
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.04
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.03
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.98
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.95
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.86
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.85
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.78
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.71
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.67
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.66
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.63
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.59
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.55
PHA02713	557	hypothetical protein; Provisional	96.48
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.47
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.38
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.32
KOG2395	644	consensus Protein involved in vacuole import and d	96.28
KOG2444	238	consensus WD40 repeat protein [General function pr	96.26
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.2
PRK13616	591	lipoprotein LpqB; Provisional	96.19
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.06
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.92
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.91
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.62
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.55
PHA02713	557	hypothetical protein; Provisional	95.38
PHA03098	534	kelch-like protein; Provisional	95.38
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.37
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.34
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.34
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.32
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.32
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.28
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.27
PRK13616	591	lipoprotein LpqB; Provisional	95.04
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.86
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.73
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.64
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.56
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.53
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.52
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.47
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.14
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.11
PRK10115	686	protease 2; Provisional	93.99
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	93.89
PHA02790	480	Kelch-like protein; Provisional	93.83
PHA03098	534	kelch-like protein; Provisional	93.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	93.4
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.04
KOG2247	615	consensus WD40 repeat-containing protein [General	92.91
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.88
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.87
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.54
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.38
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	92.35
COG5276	370	Uncharacterized conserved protein [Function unknow	91.89
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	91.53
COG5167	776	VID27 Protein involved in vacuole import and degra	91.28
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	91.1
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.85
PHA02790	480	Kelch-like protein; Provisional	90.77
COG5167	776	VID27 Protein involved in vacuole import and degra	90.27
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	89.59
PRK13684	334	Ycf48-like protein; Provisional	89.33
COG4590	733	ABC-type uncharacterized transport system, permeas	89.3
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.19
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.13
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.48
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.21
PF12768	281	Rax2: Cortical protein marker for cell polarity	87.84
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	87.47
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.42
KOG2377	657	consensus Uncharacterized conserved protein [Funct	87.35
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.19
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	86.81
KOG2247	615	consensus WD40 repeat-containing protein [General	86.64
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.62
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.12
PLN02153	341	epithiospecifier protein	86.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	85.95
KOG3616	1636	consensus Selective LIM binding factor [Transcript	85.79
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.61
PRK10115	686	protease 2; Provisional	85.26
COG4590	733	ABC-type uncharacterized transport system, permeas	84.97
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	84.54
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	84.07
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	83.56
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	83.09
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.07
PRK13684	334	Ycf48-like protein; Provisional	82.73
PLN02193	470	nitrile-specifier protein	81.88
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	81.28
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	81.08
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	80.98
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	80.86
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	80.74
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	80.33

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=6.5e-75  Score=519.90  Aligned_cols=394  Identities=40%  Similarity=0.727  Sum_probs=339.7

Q ss_pred             ccccchhhhhccccCChhHhHhhhhCcCCCCcceEeccCCc--ccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcch
Q 010997           36 HQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQL--EQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRV  113 (496)
Q Consensus        36 ~~~~~~~~~~~w~~~~~~ly~~~~~~~~~wps~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~  113 (496)
                      +++.|+|+|++||||+|+|||++++|.|+||||+|||+|++  +...+...|||++||||+++++|+|+|+++.++....
T Consensus        12 ~~~~i~Eey~~WKkNtp~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~   91 (422)
T KOG0264|consen   12 EQRQINEEYKIWKKNTPFLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDA   91 (422)
T ss_pred             ccccccchhhHHhhcCcHHHHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCccc
Confidence            44589999999999999999999999999999999999984  4557778899999999999999999999987765421


Q ss_pred             --hhhccccccCc----ccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCC
Q 010997          114 --AAAEHISQFNE----EARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP  187 (496)
Q Consensus       114 --~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  187 (496)
                        .+........+    .....++++.+.+.|.|+|++++++|+++.++|+++..+.|+|||..+........+  ..+|
T Consensus        92 ~~~~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--~~~P  169 (422)
T KOG0264|consen   92 QFEDKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--ECRP  169 (422)
T ss_pred             ccccccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--cCCC
Confidence              11111111111    123457888899999999999999999999999999999999999999876655443  5688


Q ss_pred             ceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCC
Q 010997          188 DLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  266 (496)
Q Consensus       188 ~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (496)
                      ...|.||++ .-++|+|++... +|++|+.|++|++||+......                                 ..
T Consensus       170 dl~L~gH~~-eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~---------------------------------~~  215 (422)
T KOG0264|consen  170 DLRLKGHEK-EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE---------------------------------DK  215 (422)
T ss_pred             ceEEEeecc-cccccccccccceeEeeccCCCcEEEEeccccccC---------------------------------Cc
Confidence            899999998 468999999744 8999999999999999854321                                 12


Q ss_pred             CcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997          267 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  346 (496)
Q Consensus       267 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg  346 (496)
                      ...+...+.+|...|.+++|++....+|+++++|+.+.|||+|+..........+|...|+|++|+|+++.+|||||.|+
T Consensus       216 ~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~  295 (422)
T KOG0264|consen  216 VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADK  295 (422)
T ss_pred             cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCC
Confidence            34556889999999999999999989999999999999999997443456667899999999999999999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  426 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  426 (496)
                      +|+|||+|++.     .+++++.+|...|.+|.|||+...+||+++.|+++.|||+...++++..+.+++ .|++++|.|
T Consensus       296 tV~LwDlRnL~-----~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d-gppEllF~H  369 (422)
T KOG0264|consen  296 TVALWDLRNLN-----KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED-GPPELLFIH  369 (422)
T ss_pred             cEEEeechhcc-----cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc-CCcceeEEe
Confidence            99999999985     799999999999999999999999999999999999999999888887444444 899999999


Q ss_pred             cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHH
Q 010997          427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV  478 (496)
Q Consensus       427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~  478 (496)
                      .||...|.++.|+|+.+++++|+++|       +.++||++.+.++++....
T Consensus       370 gGH~~kV~DfsWnp~ePW~I~SvaeD-------N~LqIW~~s~~i~~~e~~~  414 (422)
T KOG0264|consen  370 GGHTAKVSDFSWNPNEPWTIASVAED-------NILQIWQMAENIYNPEDPE  414 (422)
T ss_pred             cCcccccccccCCCCCCeEEEEecCC-------ceEEEeeccccccCccccC
Confidence            99999999999999999999999987       9999999999998876543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-48  Score=339.47  Aligned_cols=309  Identities=21%  Similarity=0.307  Sum_probs=263.8

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .+.+|.++|.|++|+| ++..||+|+.|.++++||+.+.            .|..+.++|.. .|.|++|+|||+.||||
T Consensus       110 S~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~Te------------Tp~~t~KgH~~-WVlcvawsPDgk~iASG  175 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTE------------TPLFTCKGHKN-WVLCVAWSPDGKKIASG  175 (480)
T ss_pred             ccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCC------------CcceeecCCcc-EEEEEEECCCcchhhcc
Confidence            4568999999999999 9999999999999999999998            88899999998 79999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccc------c--CCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAK------S--AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  286 (496)
                      +.||+|++||..++......-.....      .  ...............++.+.+|+......+..+.+|+.+|+|++|
T Consensus       176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw  255 (480)
T KOG0271|consen  176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW  255 (480)
T ss_pred             ccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence            99999999999887654322111100      0  000111123444567899999999999999999999999999999


Q ss_pred             ccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec-----------C----------------------
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN-----------P----------------------  333 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s-----------p----------------------  333 (496)
                      --+|  ++++|+.|++|++|+...+.  +...+++|...|+.++.+           |                      
T Consensus       256 GG~g--liySgS~DrtIkvw~a~dG~--~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  256 GGEG--LIYSGSQDRTIKVWRALDGK--LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             cCCc--eEEecCCCceEEEEEccchh--HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence            7665  89999999999999998887  788889999999999987           2                      


Q ss_pred             --CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997          334 --LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  411 (496)
Q Consensus       334 --~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~  411 (496)
                        ..+..|++|+.|.++.+|+....     .+++..+.+|..-|+.+.||||+++ +|+++-|..|++||.+++      
T Consensus       332 ~~~~~erlVSgsDd~tlflW~p~~~-----kkpi~rmtgHq~lVn~V~fSPd~r~-IASaSFDkSVkLW~g~tG------  399 (480)
T KOG0271|consen  332 LKDSGERLVSGSDDFTLFLWNPFKS-----KKPITRMTGHQALVNHVSFSPDGRY-IASASFDKSVKLWDGRTG------  399 (480)
T ss_pred             hccCcceeEEecCCceEEEeccccc-----ccchhhhhchhhheeeEEECCCccE-EEEeecccceeeeeCCCc------
Confidence              12345999999999999998764     3688999999999999999999995 689999999999999986      


Q ss_pred             CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEE
Q 010997          412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS  491 (496)
Q Consensus       412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~  491 (496)
                               +.+..++||...|+.++|+.+.+ |++       ||+.|.++++|+++      +.++...|.||...|.+
T Consensus       400 ---------k~lasfRGHv~~VYqvawsaDsR-LlV-------S~SkDsTLKvw~V~------tkKl~~DLpGh~DEVf~  456 (480)
T KOG0271|consen  400 ---------KFLASFRGHVAAVYQVAWSADSR-LLV-------SGSKDSTLKVWDVR------TKKLKQDLPGHADEVFA  456 (480)
T ss_pred             ---------chhhhhhhccceeEEEEeccCcc-EEE-------EcCCCceEEEEEee------eeeecccCCCCCceEEE
Confidence                     66778999999999999999655 566       55556999999999      78899999999999999


Q ss_pred             eccCC
Q 010997          492 CTSKP  496 (496)
Q Consensus       492 ~~~sP  496 (496)
                      ++|+|
T Consensus       457 vDwsp  461 (480)
T KOG0271|consen  457 VDWSP  461 (480)
T ss_pred             EEecC
Confidence            99998

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.9e-46  Score=329.44  Aligned_cols=268  Identities=24%  Similarity=0.381  Sum_probs=245.0

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceEE
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLS  213 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~s  213 (496)
                      .++-+.+|..+.|++ +++.||||+.+|.++||+....            ....+|.||.. .|.++.|+|.  +..|+|
T Consensus       171 Q~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~------------~~~~~l~gH~~-~v~~~~fhP~~~~~~lat  236 (459)
T KOG0272|consen  171 QVGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQC------------NLLQTLRGHTS-RVGAAVFHPVDSDLNLAT  236 (459)
T ss_pred             hccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCc------------ceeEEEecccc-ceeeEEEccCCCccceee
Confidence            457788999999999 8999999999999999999887            66789999998 5899999997  558999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.||++++|++++.                                        .++..+.+|...|..++|+|+| .+
T Consensus       237 ~s~Dgtvklw~~~~e----------------------------------------~~l~~l~gH~~RVs~VafHPsG-~~  275 (459)
T KOG0272|consen  237 ASADGTVKLWKLSQE----------------------------------------TPLQDLEGHLARVSRVAFHPSG-KF  275 (459)
T ss_pred             eccCCceeeeccCCC----------------------------------------cchhhhhcchhhheeeeecCCC-ce
Confidence            999999999998742                                        3457889999999999999999 89


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      |+|++.|.+-++||++++.  ......+|...|.+++|.| +|.+++||+.|..-+|||+|+      +.++..+.+|..
T Consensus       276 L~TasfD~tWRlWD~~tk~--ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt------gr~im~L~gH~k  346 (459)
T KOG0272|consen  276 LGTASFDSTWRLWDLETKS--ELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT------GRCIMFLAGHIK  346 (459)
T ss_pred             eeecccccchhhcccccch--hhHhhcccccccceeEecC-CCceeeccCccchhheeeccc------CcEEEEeccccc
Confidence            9999999999999999988  4556679999999999999 999999999999999999999      899999999999


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  453 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~  453 (496)
                      +|.+|+|+|+|- .+||||.|++++|||++..               ..++...+|.+-|+.|.|+|..+++++|+|.| 
T Consensus       347 ~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r---------------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD-  409 (459)
T KOG0272|consen  347 EILSVAFSPNGY-HLATGSSDNTCKVWDLRMR---------------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYD-  409 (459)
T ss_pred             ceeeEeECCCce-EEeecCCCCcEEEeeeccc---------------ccceecccccchhhheEecccCCeEEEEcccC-
Confidence            999999999997 5799999999999999985               44777899999999999999888888866665 


Q ss_pred             CCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          454 DSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       454 ~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                            ++++||...      +.++++.|.||.+.|.+|+.+|
T Consensus       410 ------~t~kiWs~~------~~~~~ksLaGHe~kV~s~Dis~  440 (459)
T KOG0272|consen  410 ------NTVKIWSTR------TWSPLKSLAGHEGKVISLDISP  440 (459)
T ss_pred             ------cceeeecCC------CcccchhhcCCccceEEEEecc
Confidence                  999999998      7999999999999999999876

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-44  Score=316.82  Aligned_cols=303  Identities=26%  Similarity=0.379  Sum_probs=252.2

Q ss_pred             cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 010997           93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA  172 (496)
Q Consensus        93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~  172 (496)
                      .+|+-++++++|++..-.|                     .....+|...|.|++|+| |++.||+|+.||+|++||..+
T Consensus       131 ~tGsGD~TvR~WD~~TeTp---------------------~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpkt  188 (480)
T KOG0271|consen  131 VTGSGDTTVRLWDLDTETP---------------------LFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKT  188 (480)
T ss_pred             EecCCCceEEeeccCCCCc---------------------ceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCC
Confidence            3567788888887654222                     234568999999999999 999999999999999999988


Q ss_pred             CCCccccCCCCCCCCceEEecCCCCcceeeeecC-----CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCc
Q 010997          173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-----TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS  247 (496)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-----~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  247 (496)
                      +.           .....|.||.. .|++|+|.|     ..++|++++.||+|+|||+..+.+.........     ...
T Consensus       189 g~-----------~~g~~l~gH~K-~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~-----~VT  251 (480)
T KOG0271|consen  189 GQ-----------QIGRALRGHKK-WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA-----SVT  251 (480)
T ss_pred             CC-----------cccccccCccc-ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc-----ceE
Confidence            84           33457899998 799999976     356999999999999999987655443332221     112


Q ss_pred             eeccC------CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc-----------cCC--------------------
Q 010997          248 IIKQS------PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC-----------PSS--------------------  290 (496)
Q Consensus       248 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----------~~~--------------------  290 (496)
                      ++..+      ....+..+..|+...+...+.+.+|...|+.++.+           |.+                    
T Consensus       252 CvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  252 CVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             EEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence            22222      23556778889988899999999999999999887           222                    


Q ss_pred             ----CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997          291 ----AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  366 (496)
Q Consensus       291 ----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  366 (496)
                          +..+++|++|.++.+|+....+.+ +....+|..-|+.+.|+| ++.++|+++.|..|++||.++      ++.+.
T Consensus       332 ~~~~~erlVSgsDd~tlflW~p~~~kkp-i~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~t------Gk~la  403 (480)
T KOG0271|consen  332 LKDSGERLVSGSDDFTLFLWNPFKSKKP-ITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRT------GKFLA  403 (480)
T ss_pred             hccCcceeEEecCCceEEEecccccccc-hhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCC------cchhh
Confidence                225999999999999998776654 445569999999999999 999999999999999999999      99999


Q ss_pred             EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997          367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~  446 (496)
                      +|++|-.+|+.++|+.|.+ ||++|+.|.++++||+++.               .+.+.+.||.+.|.++.|+|+|..++
T Consensus       404 sfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk---------------Kl~~DLpGh~DEVf~vDwspDG~rV~  467 (480)
T KOG0271|consen  404 SFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK---------------KLKQDLPGHADEVFAVDWSPDGQRVA  467 (480)
T ss_pred             hhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee---------------eecccCCCCCceEEEEEecCCCceee
Confidence            9999999999999999988 7889999999999999985               67778899999999999999998876


Q ss_pred             EEecCCCCCCCCCCeEEEee
Q 010997          447 VSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~  466 (496)
                              +||.|..+++|.
T Consensus       468 --------sggkdkv~~lw~  479 (480)
T KOG0271|consen  468 --------SGGKDKVLRLWR  479 (480)
T ss_pred             --------cCCCceEEEeec
Confidence                    899999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-44  Score=320.29  Aligned_cols=249  Identities=23%  Similarity=0.357  Sum_probs=227.7

Q ss_pred             ceEEEecCCCceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          132 KKHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      .+..+.+|.+.|.++.|+|. ++.-+|||+.||++++|++++.            .++..+.||.. .|..++|+|+|++
T Consensus       209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e------------~~l~~l~gH~~-RVs~VafHPsG~~  275 (459)
T KOG0272|consen  209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE------------TPLQDLEGHLA-RVSRVAFHPSGKF  275 (459)
T ss_pred             eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC------------cchhhhhcchh-hheeeeecCCCce
Confidence            35577899999999999997 4778999999999999999987            77889999997 6899999999999


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      |+|++.|.+-++||++++..                                        +....||...|.+++|+|+|
T Consensus       276 L~TasfD~tWRlWD~~tk~E----------------------------------------lL~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  276 LGTASFDSTWRLWDLETKSE----------------------------------------LLLQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             eeecccccchhhcccccchh----------------------------------------hHhhcccccccceeEecCCC
Confidence            99999999999999987543                                        24567899999999999999


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                       .+++||+.|..-+|||+|++.  ++..+.+|..+|..|+|+| +|..||||+.|++++|||+|.      ...+.++.+
T Consensus       316 -SL~~tGGlD~~~RvWDlRtgr--~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~------r~~ly~ipA  385 (459)
T KOG0272|consen  316 -SLAATGGLDSLGRVWDLRTGR--CIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRM------RSELYTIPA  385 (459)
T ss_pred             -ceeeccCccchhheeecccCc--EEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeecc------cccceeccc
Confidence             799999999999999999999  7888889999999999999 999999999999999999999      778999999


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      |.+-|+.|.|+|...++|+|++.|++++||.....               .++.++.||.+.|.+++.++++.+++    
T Consensus       386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---------------~~~ksLaGHe~kV~s~Dis~d~~~i~----  446 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---------------SPLKSLAGHEGKVISLDISPDSQAIA----  446 (459)
T ss_pred             ccchhhheEecccCCeEEEEcccCcceeeecCCCc---------------ccchhhcCCccceEEEEeccCCceEE----
Confidence            99999999999966668899999999999999886               67778999999999999999888766    


Q ss_pred             CCCCCCCCCCeEEEee
Q 010997          451 DDCDSTGGGGTLQIWR  466 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~  466 (496)
                          |++.|+++++|.
T Consensus       447 ----t~s~DRT~KLW~  458 (459)
T KOG0272|consen  447 ----TSSFDRTIKLWR  458 (459)
T ss_pred             ----EeccCceeeecc
Confidence                667779999996

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=100.00  E-value=1e-41  Score=298.76  Aligned_cols=358  Identities=28%  Similarity=0.513  Sum_probs=274.8

Q ss_pred             ChhHhHhhhhCcCCCCcceEeccCC-ccc--CCCcceEEEEEEeecCCCCCCeEEEEEEeccC-cchh---hhccccccC
Q 010997           51 VPVLYDWLANHNLVWPSLSCRWGPQ-LEQ--ATYKNRQRLYLSEQTDGSVPNTLVIANCEVVK-PRVA---AAEHISQFN  123 (496)
Q Consensus        51 ~~~ly~~~~~~~~~wps~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~~~~---~~~~~~~~~  123 (496)
                      .|..|.+++.....||||+++-.|+ +..  .......-+.-|||+.....|.|.|..+..+. .+..   ..+.-..-+
T Consensus        56 DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~edd  135 (440)
T KOG0302|consen   56 DPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDD  135 (440)
T ss_pred             CHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccc
Confidence            4779999999999999999997775 222  23332233445788988899999988776432 2211   111111112


Q ss_pred             cccCCcccceEEEecCCCceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccc----cCCCCCCCCceEEecCCCCc
Q 010997          124 EEARSPFVKKHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHA----VLGATNSRPDLILTGHQDNA  198 (496)
Q Consensus       124 ~~~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~l~~h~~~~  198 (496)
                      ++.+.|. ...+.++|.+.|++++.++. +..+.|+-+..|.|+|||+........    .......+|+.++.+|.. .
T Consensus       136 edD~~P~-~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-E  213 (440)
T KOG0302|consen  136 EDDRKPQ-IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-E  213 (440)
T ss_pred             hhhcccc-ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-c
Confidence            2222333 34577899999999999985 566888899999999999976533221    111245689999999997 5


Q ss_pred             ceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          199 EFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       199 v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      -++|+|+|-. ..|+||..-+.|++|...++.-.  .+.                                   ..|.+|
T Consensus       214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~--vd~-----------------------------------~Pf~gH  256 (440)
T KOG0302|consen  214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK--VDQ-----------------------------------RPFTGH  256 (440)
T ss_pred             ceeeecccccccccccCccccceEeeeeccCcee--ecC-----------------------------------cccccc
Confidence            7999999953 36899999999999998764221  111                                   446789


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  357 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~  357 (496)
                      +..|.+++|+|....+|++||.||+|+|||+|.+........++|.+.|+.|.|+. ...+||+|+.||+++|||+|+.+
T Consensus       257 ~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~  335 (440)
T KOG0302|consen  257 TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFK  335 (440)
T ss_pred             ccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhcc
Confidence            99999999999988999999999999999999985434444489999999999999 66799999999999999999977


Q ss_pred             CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCC----CCCCCCCCeeEEEecCCCCCc
Q 010997          358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG----PRTTNYPAGLFFQHAGHRDKV  433 (496)
Q Consensus       358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~h~~~V  433 (496)
                      .   +.++..|+.|..+|++|.|+|....+|++++.|.+|.|||+..........    ......|++++|.|.|.. .|
T Consensus       336 ~---~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQk-e~  411 (440)
T KOG0302|consen  336 S---GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQK-EV  411 (440)
T ss_pred             C---CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchh-Hh
Confidence            5   589999999999999999999988899999999999999998743311111    112347999999999865 58


Q ss_pred             ceEEecCCCCcEEEEecCC
Q 010997          434 VDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       434 ~~~~~~p~~~~l~~s~s~d  452 (496)
                      ..+.|+++.+.+++|++-|
T Consensus       412 KevhWH~QiPG~lvsTa~d  430 (440)
T KOG0302|consen  412 KEVHWHRQIPGLLVSTAID  430 (440)
T ss_pred             hhheeccCCCCeEEEeccc
Confidence            9999999999999987765

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.2e-40  Score=318.49  Aligned_cols=269  Identities=25%  Similarity=0.471  Sum_probs=229.5

Q ss_pred             CCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCcc-------------------ccCCCCCCCC
Q 010997          127 RSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH-------------------AVLGATNSRP  187 (496)
Q Consensus       127 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~-------------------~~~~~~~~~~  187 (496)
                      ..|.+-...+..-...|+|..|++ +..+||.|..|..|++|.+.....+.                   ..........
T Consensus       365 ~lpSic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~  443 (707)
T KOG0263|consen  365 SLPSICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGT  443 (707)
T ss_pred             CCCcEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCce
Confidence            345555555555567899999999 77899999999999999998532100                   0111122234


Q ss_pred             ceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997          188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  267 (496)
Q Consensus       188 ~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (496)
                      ..++.||++ +|++..|+|+.++|++||.|++||+|.+.+..+                                     
T Consensus       444 ~~~L~GH~G-PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-------------------------------------  485 (707)
T KOG0263|consen  444 SRTLYGHSG-PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-------------------------------------  485 (707)
T ss_pred             eEEeecCCC-ceeeeeecccccceeeccCCcceeeeeccccee-------------------------------------
Confidence            456899998 899999999999999999999999999985433                                     


Q ss_pred             cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  347 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~  347 (496)
                         +..+.+|..+|.+++|+|.| .+|||++.|++-++|......  ..+.+.+|-+.|.|++|+| +.+|+|+||.|.+
T Consensus       486 ---~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~--PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~t  558 (707)
T KOG0263|consen  486 ---LVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK--PLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRT  558 (707)
T ss_pred             ---EEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC--chhhhcccccccceEEECC-cccccccCCCCce
Confidence               36788999999999999999 999999999999999988766  6777889999999999999 9999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997          348 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  427 (496)
Q Consensus       348 i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (496)
                      ||+||..+      +..++.|.||.++|.+|+|||+|.+ ||+|+.||.|++||+...               .++..+.
T Consensus       559 VRlWDv~~------G~~VRiF~GH~~~V~al~~Sp~Gr~-LaSg~ed~~I~iWDl~~~---------------~~v~~l~  616 (707)
T KOG0263|consen  559 VRLWDVST------GNSVRIFTGHKGPVTALAFSPCGRY-LASGDEDGLIKIWDLANG---------------SLVKQLK  616 (707)
T ss_pred             EEEEEcCC------CcEEEEecCCCCceEEEEEcCCCce-EeecccCCcEEEEEcCCC---------------cchhhhh
Confidence            99999999      8999999999999999999999997 689999999999999985               5666788


Q ss_pred             CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCC
Q 010997          428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  471 (496)
Q Consensus       428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~  471 (496)
                      +|.+.|.++.|+.+|..|+        +||.|++|++||+....
T Consensus       617 ~Ht~ti~SlsFS~dg~vLa--------sgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  617 GHTGTIYSLSFSRDGNVLA--------SGGADNSVRLWDLTKVI  652 (707)
T ss_pred             cccCceeEEEEecCCCEEE--------ecCCCCeEEEEEchhhc
Confidence            9999999999999887655        77778999999997543

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-39  Score=273.07  Aligned_cols=275  Identities=21%  Similarity=0.371  Sum_probs=228.4

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .....+|++.|..++..+.+.+++.+++.|.++.+|++......       ...++..+.||.. .|..+..+++|++.+
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-------~G~~~r~~~GHsH-~v~dv~~s~dg~~al   79 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-------YGVPVRRLTGHSH-FVSDVVLSSDGNFAL   79 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc-------cCceeeeeeccce-EecceEEccCCceEE
Confidence            34567899999999999988999999999999999999877322       2367889999988 699999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +++.|+++++||+.+++                                        +.+.|.+|...|.+++|++++ .
T Consensus        80 S~swD~~lrlWDl~~g~----------------------------------------~t~~f~GH~~dVlsva~s~dn-~  118 (315)
T KOG0279|consen   80 SASWDGTLRLWDLATGE----------------------------------------STRRFVGHTKDVLSVAFSTDN-R  118 (315)
T ss_pred             eccccceEEEEEecCCc----------------------------------------EEEEEEecCCceEEEEecCCC-c
Confidence            99999999999998653                                        347899999999999999998 7


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeecc-CCCCeEEEEecCCC-CcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLD-DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~~-~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      .+++|+.|.+|++|++....  ....... +...|+|+.|+|.. ..+|++++.|++|++||+++      .+....+.+
T Consensus       119 qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~~g  190 (315)
T KOG0279|consen  119 QIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTFIG  190 (315)
T ss_pred             eeecCCCcceeeeeeecccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcccc
Confidence            89999999999999987665  2222222 37899999999932 78999999999999999999      788889999


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      |++.++.+++||||. +.++|+.||.+.+||++..               +.++ ..+|...|.+++|+|+..+|.+..+
T Consensus       191 h~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~---------------k~ly-sl~a~~~v~sl~fspnrywL~~at~  253 (315)
T KOG0279|consen  191 HSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEG---------------KNLY-SLEAFDIVNSLCFSPNRYWLCAATA  253 (315)
T ss_pred             ccccEEEEEECCCCC-EEecCCCCceEEEEEccCC---------------ceeE-eccCCCeEeeEEecCCceeEeeccC
Confidence            999999999999998 7899999999999999985               2233 3467889999999997766655433


Q ss_pred             CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhc---------cceEEEeccCC
Q 010997          451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF---------KAHVISCTSKP  496 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h---------~~~v~~~~~sP  496 (496)
                               ..|+|||+.      ++.++.+|..-         .-.-.+||||+
T Consensus       254 ---------~sIkIwdl~------~~~~v~~l~~d~~g~s~~~~~~~clslaws~  293 (315)
T KOG0279|consen  254 ---------TSIKIWDLE------SKAVVEELKLDGIGPSSKAGDPICLSLAWSA  293 (315)
T ss_pred             ---------CceEEEecc------chhhhhhccccccccccccCCcEEEEEEEcC
Confidence                     569999999      56666665422         22356777764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.8e-40  Score=280.28  Aligned_cols=274  Identities=22%  Similarity=0.358  Sum_probs=237.9

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      +..+.+|+|+|+.++|+| ++.+||||+.|..|.+|++....           +-...+.+|.+ +|..+.|.++++.|+
T Consensus        40 ~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdc-----------eN~~~lkgHsg-AVM~l~~~~d~s~i~  106 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDC-----------ENFWVLKGHSG-AVMELHGMRDGSHIL  106 (338)
T ss_pred             hhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccc-----------cceeeeccccc-eeEeeeeccCCCEEE
Confidence            456789999999999999 99999999999999999977653           34467889998 799999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +++.|++|+.||+++++..                                        +.+.+|..-|+.+.-+..|..
T Consensus       107 S~gtDk~v~~wD~~tG~~~----------------------------------------rk~k~h~~~vNs~~p~rrg~~  146 (338)
T KOG0265|consen  107 SCGTDKTVRGWDAETGKRI----------------------------------------RKHKGHTSFVNSLDPSRRGPQ  146 (338)
T ss_pred             EecCCceEEEEecccceee----------------------------------------ehhccccceeeecCccccCCe
Confidence            9999999999999876543                                        677889999999997778888


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      ++.+++.|+++++||+|+..  .++++ .....++++.|.. .+..+.+|+-|+.|++||+|.      ...++.+.+|.
T Consensus       147 lv~SgsdD~t~kl~D~R~k~--~~~t~-~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~------~d~~~~lsGh~  216 (338)
T KOG0265|consen  147 LVCSGSDDGTLKLWDIRKKE--AIKTF-ENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK------NDGLYTLSGHA  216 (338)
T ss_pred             EEEecCCCceEEEEeecccc--hhhcc-ccceeEEEEEecc-cccceeeccccCceeeecccc------CcceEEeeccc
Confidence            99999999999999999877  55554 4567899999998 888999999999999999999      78999999999


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe-eEEEecCCCC----CcceEEecCCCCcEEE
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG-LFFQHAGHRD----KVVDFHWNASDPWTVV  447 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~----~V~~~~~~p~~~~l~~  447 (496)
                      .+|+.+..+|+|.+++ +-+.|.++++||++..            .|.+ ++..+.||..    ....++|+|++..+- 
T Consensus       217 DtIt~lsls~~gs~ll-snsMd~tvrvwd~rp~------------~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~-  282 (338)
T KOG0265|consen  217 DTITGLSLSRYGSFLL-SNSMDNTVRVWDVRPF------------APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT-  282 (338)
T ss_pred             CceeeEEeccCCCccc-cccccceEEEEEeccc------------CCCCceEEEeecchhhhhhhcceeeccCCCCccc-
Confidence            9999999999999865 9999999999999875            2222 3555666543    356789999888755 


Q ss_pred             EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                             .|+.|..+++||..      ....+..++||.+.|..++|+|
T Consensus       283 -------ags~dr~vyvwd~~------~r~~lyklpGh~gsvn~~~Fhp  318 (338)
T KOG0265|consen  283 -------AGSADRFVYVWDTT------SRRILYKLPGHYGSVNEVDFHP  318 (338)
T ss_pred             -------cccccceEEEeecc------cccEEEEcCCcceeEEEeeecC
Confidence                   67778999999998      6788899999999999999998

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.2e-39  Score=273.49  Aligned_cols=277  Identities=17%  Similarity=0.306  Sum_probs=239.4

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..+.+|.+.|.++.|++ +.+.|++++.||.+.|||.-+.            .....++-... .|..++|+|.|+++|+
T Consensus        49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~Tt------------nK~haipl~s~-WVMtCA~sPSg~~VAc  114 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTT------------NKVHAIPLPSS-WVMTCAYSPSGNFVAC  114 (343)
T ss_pred             EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccc------------cceeEEecCce-eEEEEEECCCCCeEEe
Confidence            45569999999999999 8999999999999999998877            33444555555 7999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+-|+...||++.+....                                  ......+.+.+|.+-+.++.|-+++  .
T Consensus       115 GGLdN~Csiy~ls~~d~~----------------------------------g~~~v~r~l~gHtgylScC~f~dD~--~  158 (343)
T KOG0286|consen  115 GGLDNKCSIYPLSTRDAE----------------------------------GNVRVSRELAGHTGYLSCCRFLDDN--H  158 (343)
T ss_pred             cCcCceeEEEeccccccc----------------------------------ccceeeeeecCccceeEEEEEcCCC--c
Confidence            999999999999743211                                  1112236788999999999998855  7


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      |+|++.|.++.+||+++++  ....+.+|.+.|.+++++|.+++.|++|+.|+..+|||+|.      +.++++|.+|..
T Consensus       159 ilT~SGD~TCalWDie~g~--~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~------~~c~qtF~ghes  230 (343)
T KOG0286|consen  159 ILTGSGDMTCALWDIETGQ--QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS------GQCVQTFEGHES  230 (343)
T ss_pred             eEecCCCceEEEEEcccce--EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC------cceeEeeccccc
Confidence            9999999999999999998  67888999999999999998899999999999999999999      899999999999


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  453 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~  453 (496)
                      .|++|.|.|+|.. ||+|++|+++++||++...             ...++.+..-..+|++++|+..|+.|+       
T Consensus       231 DINsv~ffP~G~a-fatGSDD~tcRlyDlRaD~-------------~~a~ys~~~~~~gitSv~FS~SGRlLf-------  289 (343)
T KOG0286|consen  231 DINSVRFFPSGDA-FATGSDDATCRLYDLRADQ-------------ELAVYSHDSIICGITSVAFSKSGRLLF-------  289 (343)
T ss_pred             ccceEEEccCCCe-eeecCCCceeEEEeecCCc-------------EEeeeccCcccCCceeEEEcccccEEE-------
Confidence            9999999999985 7899999999999999841             134455555566899999999998877       


Q ss_pred             CCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          454 DSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       454 ~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                       +|..|.++.+||.-      .++.+..|.+|.++|.+|..+|
T Consensus       290 -agy~d~~c~vWDtl------k~e~vg~L~GHeNRvScl~~s~  325 (343)
T KOG0286|consen  290 -AGYDDFTCNVWDTL------KGERVGVLAGHENRVSCLGVSP  325 (343)
T ss_pred             -eeecCCceeEeecc------ccceEEEeeccCCeeEEEEECC
Confidence             55567999999998      6888899999999999999887

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.9e-40  Score=293.58  Aligned_cols=263  Identities=25%  Similarity=0.493  Sum_probs=229.9

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  219 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~  219 (496)
                      ...|+.|+|.| +|+.|++|+..|.+.+|+....            .....++.|.. +|.++.|++++.+++||+.+|.
T Consensus        96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~f------------nFEtilQaHDs-~Vr~m~ws~~g~wmiSgD~gG~  161 (464)
T KOG0284|consen   96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSF------------NFETILQAHDS-PVRTMKWSHNGTWMISGDKGGM  161 (464)
T ss_pred             ccceeeEEEcC-CCceeEeecccccEEEecCcee------------eHHHHhhhhcc-cceeEEEccCCCEEEEcCCCce
Confidence            45799999999 8899999999999999998665            44557788987 8999999999999999999999


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEEEEc
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      |++|+.+-..                                         ++.+.. |...|++++|+|.+ ..|++|+
T Consensus       162 iKyWqpnmnn-----------------------------------------Vk~~~ahh~eaIRdlafSpnD-skF~t~S  199 (464)
T KOG0284|consen  162 IKYWQPNMNN-----------------------------------------VKIIQAHHAEAIRDLAFSPND-SKFLTCS  199 (464)
T ss_pred             EEecccchhh-----------------------------------------hHHhhHhhhhhhheeccCCCC-ceeEEec
Confidence            9999976321                                         133444 44899999999977 7899999


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  378 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l  378 (496)
                      +||+|+|||.+..+  ....+.+|.-.|.+++|+| ...+||+|+.|..|++||.++      +.++.++.+|+..|..+
T Consensus       200 dDg~ikiWdf~~~k--ee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS------g~cl~tlh~HKntVl~~  270 (464)
T KOG0284|consen  200 DDGTIKIWDFRMPK--EERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS------GSCLATLHGHKNTVLAV  270 (464)
T ss_pred             CCCeEEEEeccCCc--hhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCC------cchhhhhhhccceEEEE
Confidence            99999999999887  4455689999999999999 889999999999999999999      89999999999999999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCC
Q 010997          379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG  458 (496)
Q Consensus       379 ~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~  458 (496)
                      .|+|++.+ |+++|.|..++++|++..               .-++...+|...|+++.|+|-.+.+++       +||.
T Consensus       271 ~f~~n~N~-Llt~skD~~~kv~DiR~m---------------kEl~~~r~Hkkdv~~~~WhP~~~~lft-------sgg~  327 (464)
T KOG0284|consen  271 KFNPNGNW-LLTGSKDQSCKVFDIRTM---------------KELFTYRGHKKDVTSLTWHPLNESLFT-------SGGS  327 (464)
T ss_pred             EEcCCCCe-eEEccCCceEEEEehhHh---------------HHHHHhhcchhhheeecccccccccee-------eccC
Confidence            99999975 679999999999999965               446678999999999999999998887       6777


Q ss_pred             CCeEEEeecCCCCcCCchHHHHHH-HhccceEEEeccCC
Q 010997          459 GGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP  496 (496)
Q Consensus       459 Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~sP  496 (496)
                      ||.|..|.+.      ..+++.++ .+|.+.|++++|||
T Consensus       328 Dgsvvh~~v~------~~~p~~~i~~AHd~~iwsl~~hP  360 (464)
T KOG0284|consen  328 DGSVVHWVVG------LEEPLGEIPPAHDGEIWSLAYHP  360 (464)
T ss_pred             CCceEEEecc------ccccccCCCcccccceeeeeccc
Confidence            7999999998      23344443 58999999999998

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4.3e-37  Score=261.24  Aligned_cols=252  Identities=23%  Similarity=0.349  Sum_probs=215.9

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .+.+.-....|..++|+| .++++|+|+-|....||++.+.....      ..+....+.+|++ -+.|+.|.+ ...|+
T Consensus        90 ~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g------~~~v~r~l~gHtg-ylScC~f~d-D~~il  160 (343)
T KOG0286|consen   90 VHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEG------NVRVSRELAGHTG-YLSCCRFLD-DNHIL  160 (343)
T ss_pred             eeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecccccccc------cceeeeeecCccc-eeEEEEEcC-CCceE
Confidence            334445667899999999 99999999999999999998653221      1244567899998 688999987 45799


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      |++.|.+..+||+++++.                                        +..|.+|.+.|.++.++|..++
T Consensus       161 T~SGD~TCalWDie~g~~----------------------------------------~~~f~GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  161 TGSGDMTCALWDIETGQQ----------------------------------------TQVFHGHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             ecCCCceEEEEEcccceE----------------------------------------EEEecCCcccEEEEecCCCCCC
Confidence            999999999999987654                                        3788999999999999995558


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec--c
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE--G  370 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~--~  370 (496)
                      .|++|+.|+..+|||+|.+.  +...+.+|+..|++|.|.| ++.-|++|+.|++.++||+|.      ...+..+.  .
T Consensus       201 tFvSg~cD~~aklWD~R~~~--c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRa------D~~~a~ys~~~  271 (343)
T KOG0286|consen  201 TFVSGGCDKSAKLWDVRSGQ--CVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRA------DQELAVYSHDS  271 (343)
T ss_pred             eEEecccccceeeeeccCcc--eeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecC------CcEEeeeccCc
Confidence            99999999999999999998  7889999999999999999 999999999999999999998      56666665  2


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      -..+|++++||-.|+.| .+|..|..+.+||.-+.               +....+.||...|+++..+|+|..+.    
T Consensus       272 ~~~gitSv~FS~SGRlL-fagy~d~~c~vWDtlk~---------------e~vg~L~GHeNRvScl~~s~DG~av~----  331 (343)
T KOG0286|consen  272 IICGITSVAFSKSGRLL-FAGYDDFTCNVWDTLKG---------------ERVGVLAGHENRVSCLGVSPDGMAVA----  331 (343)
T ss_pred             ccCCceeEEEcccccEE-EeeecCCceeEeecccc---------------ceEEEeeccCCeeEEEEECCCCcEEE----
Confidence            34689999999999955 47888999999998774               56777889999999999999987655    


Q ss_pred             CCCCCCCCCCeEEEee
Q 010997          451 DDCDSTGGGGTLQIWR  466 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~  466 (496)
                          ||++|.+++||.
T Consensus       332 ----TgSWDs~lriW~  343 (343)
T KOG0286|consen  332 ----TGSWDSTLRIWA  343 (343)
T ss_pred             ----ecchhHheeecC
Confidence                899999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6.1e-38  Score=282.52  Aligned_cols=281  Identities=21%  Similarity=0.370  Sum_probs=233.4

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      -...|++++|+. +|.+||+|+.||.++||+....             ...+|..|.+ +|++|.|+..|+||++++.||
T Consensus       234 ~nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~-------------l~~tl~~Hkg-PI~slKWnk~G~yilS~~vD~  298 (524)
T KOG0273|consen  234 SNKDVTSLDWNN-DGTLLATGSEDGEARIWNKDGN-------------LISTLGQHKG-PIFSLKWNKKGTYILSGGVDG  298 (524)
T ss_pred             ccCCcceEEecC-CCCeEEEeecCcEEEEEecCch-------------hhhhhhccCC-ceEEEEEcCCCCEEEeccCCc
Confidence            446799999999 9999999999999999998765             3457888988 899999999999999999999


Q ss_pred             cEEEEecCCccccccCCccccccCCC-CCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGS-SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      ++.+||..++................ -.....+.....++.+.+.......|+.++.+|.++|.+|.|+|.+ .+|+++
T Consensus       299 ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~  377 (524)
T KOG0273|consen  299 TTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASC  377 (524)
T ss_pred             cEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEe
Confidence            99999998876655444332221110 1112223334556667777778888999999999999999999999 899999


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC--------CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--------DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~--------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      ++|++++||.+....  ....+.+|...|..+.|+|.        .+..+++++.|++|++||+..      +.++++|.
T Consensus       378 SdD~TlkiWs~~~~~--~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~------gv~i~~f~  449 (524)
T KOG0273|consen  378 SDDGTLKIWSMGQSN--SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES------GVPIHTLM  449 (524)
T ss_pred             cCCCeeEeeecCCCc--chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC------CceeEeec
Confidence            999999999987766  67778899999999999884        356899999999999999999      89999999


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      .|..+|++|+|+|+|++ +|+|+.||.|+||+++..               .++.... -.+.|..++|+..|..+.++.
T Consensus       450 kH~~pVysvafS~~g~y-lAsGs~dg~V~iws~~~~---------------~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~  512 (524)
T KOG0273|consen  450 KHQEPVYSVAFSPNGRY-LASGSLDGCVHIWSTKTG---------------KLVKSYQ-GTGGIFELCWNAAGDKLGACA  512 (524)
T ss_pred             cCCCceEEEEecCCCcE-EEecCCCCeeEeccccch---------------heeEeec-CCCeEEEEEEcCCCCEEEEEe
Confidence            99999999999999996 689999999999999885               3444444 356699999999998877766


Q ss_pred             cCCCCCCCCCCeEEEeecC
Q 010997          450 SDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +        ||.+++-|++
T Consensus       513 s--------d~~vcvldlr  523 (524)
T KOG0273|consen  513 S--------DGSVCVLDLR  523 (524)
T ss_pred             c--------CCCceEEEec
Confidence            6        4889988875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.2e-38  Score=276.73  Aligned_cols=271  Identities=24%  Similarity=0.424  Sum_probs=245.5

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      ..++.+|...|+.+-|+| +-.++++++.|++|++||..++            +....++||++ .|..++|+..|++|+
T Consensus       101 ~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg------------~~e~~LrGHt~-sv~di~~~a~Gk~l~  166 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETG------------ELERSLRGHTD-SVFDISFDASGKYLA  166 (406)
T ss_pred             hhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccch------------hhhhhhhcccc-ceeEEEEecCccEEE
Confidence            456778999999999999 8889999999999999999999            56778999999 599999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.|-.+.+||.++.                                       .+.++.+.+|...|.++.|-|.| .
T Consensus       167 tcSsDl~~~LWd~~~~---------------------------------------~~c~ks~~gh~h~vS~V~f~P~g-d  206 (406)
T KOG0295|consen  167 TCSSDLSAKLWDFDTF---------------------------------------FRCIKSLIGHEHGVSSVFFLPLG-D  206 (406)
T ss_pred             ecCCccchhheeHHHH---------------------------------------HHHHHHhcCcccceeeEEEEecC-C
Confidence            9999999999998752                                       22336677899999999999999 8


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      ++++++.|.+|+.|++.++.  ++.++.+|...|..++.+. ++.++|+++.|.+|++|-+.+      ..+...++.|.
T Consensus       207 ~ilS~srD~tik~We~~tg~--cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t------~~~k~~lR~hE  277 (406)
T KOG0295|consen  207 HILSCSRDNTIKAWECDTGY--CVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT------KQCKAELREHE  277 (406)
T ss_pred             eeeecccccceeEEecccce--eEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEecc------chhhhhhhccc
Confidence            99999999999999999998  7889999999999999999 999999999999999999998      77888999999


Q ss_pred             CCEEEEEEcCC--------------CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997          373 AAVLCVQWSPD--------------KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  438 (496)
Q Consensus       373 ~~i~~l~~sp~--------------~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  438 (496)
                      .+|-+++|.|.              +..++++++.|++|++||+.++               .+++.+.||...|.+++|
T Consensus       278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---------------~cL~tL~ghdnwVr~~af  342 (406)
T KOG0295|consen  278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---------------MCLFTLVGHDNWVRGVAF  342 (406)
T ss_pred             cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---------------eEEEEEecccceeeeeEE
Confidence            99999999874              1236789999999999999986               789999999999999999


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                      +|.|.| |+||++|       +++++||+.      ..+++.+++.|..-|++++|+
T Consensus       343 ~p~Gky-i~ScaDD-------ktlrvwdl~------~~~cmk~~~ah~hfvt~lDfh  385 (406)
T KOG0295|consen  343 SPGGKY-ILSCADD-------KTLRVWDLK------NLQCMKTLEAHEHFVTSLDFH  385 (406)
T ss_pred             cCCCeE-EEEEecC-------CcEEEEEec------cceeeeccCCCcceeEEEecC
Confidence            997665 6677776       999999999      789999999999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.3e-37  Score=254.95  Aligned_cols=276  Identities=20%  Similarity=0.379  Sum_probs=233.5

Q ss_pred             eEEEecCC-CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          133 KHKTIIHP-GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       133 ~~~~~~h~-~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      ...++.|+ +.|+++...| +++.||+++.- .|++||+.+.          ...|+.++.+|+. -|+++.|..+|+.+
T Consensus        32 C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~q-hvRlyD~~S~----------np~Pv~t~e~h~k-NVtaVgF~~dgrWM   98 (311)
T KOG0315|consen   32 CSRTIQHPDSQVNRLEITP-DKKDLAAAGNQ-HVRLYDLNSN----------NPNPVATFEGHTK-NVTAVGFQCDGRWM   98 (311)
T ss_pred             EEEEEecCccceeeEEEcC-CcchhhhccCC-eeEEEEccCC----------CCCceeEEeccCC-ceEEEEEeecCeEE
Confidence            44566665 6899999999 88889888764 8999999987          3468899999988 48999999999999


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      +|||.||+++|||++...+                                         +....|..+|+++..+|+. 
T Consensus        99 yTgseDgt~kIWdlR~~~~-----------------------------------------qR~~~~~spVn~vvlhpnQ-  136 (311)
T KOG0315|consen   99 YTGSEDGTVKIWDLRSLSC-----------------------------------------QRNYQHNSPVNTVVLHPNQ-  136 (311)
T ss_pred             EecCCCceEEEEeccCccc-----------------------------------------chhccCCCCcceEEecCCc-
Confidence            9999999999999986332                                         2333567899999999998 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      ..|++|..+|.|++||++...... .....-...|.++...| ++.+|+.+...|...+|++-.........++.+++.|
T Consensus       137 teLis~dqsg~irvWDl~~~~c~~-~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah  214 (311)
T KOG0315|consen  137 TELISGDQSGNIRVWDLGENSCTH-ELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH  214 (311)
T ss_pred             ceEEeecCCCcEEEEEccCCcccc-ccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence            789999999999999999875322 22234557899999999 9999999999999999998874333335788899999


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      .+.|..+.+||++++ ||++|.|.+++||+....              ..+-..+.||...+.+++||.++.|++     
T Consensus       215 ~~~il~C~lSPd~k~-lat~ssdktv~iwn~~~~--------------~kle~~l~gh~rWvWdc~FS~dg~Ylv-----  274 (311)
T KOG0315|consen  215 NGHILRCLLSPDVKY-LATCSSDKTVKIWNTDDF--------------FKLELVLTGHQRWVWDCAFSADGEYLV-----  274 (311)
T ss_pred             cceEEEEEECCCCcE-EEeecCCceEEEEecCCc--------------eeeEEEeecCCceEEeeeeccCccEEE-----
Confidence            999999999999996 689999999999999874              234556789999999999999999988     


Q ss_pred             CCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997          452 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  494 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~  494 (496)
                         ||+.|+.+++|+++      .++.++...+|-.+..+++.
T Consensus       275 ---Tassd~~~rlW~~~------~~k~v~qy~gh~K~~vc~~l  308 (311)
T KOG0315|consen  275 ---TASSDHTARLWDLS------AGKEVRQYQGHHKAAVCVAL  308 (311)
T ss_pred             ---ecCCCCceeecccc------cCceeeecCCcccccEEEEe
Confidence               88888999999999      78888999999888777764

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-37  Score=258.99  Aligned_cols=257  Identities=25%  Similarity=0.444  Sum_probs=222.9

Q ss_pred             cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CC
Q 010997          131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EP  209 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~  209 (496)
                      +.....+.-.+.+..++|++...+.+++++.||+++|||+...           ..|+..++.|.. +|+++.|++. +.
T Consensus        51 i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-----------s~Pi~~~kEH~~-EV~Svdwn~~~r~  118 (311)
T KOG0277|consen   51 IQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP-----------SKPIHKFKEHKR-EVYSVDWNTVRRR  118 (311)
T ss_pred             eEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC-----------CcchhHHHhhhh-heEEeccccccce
Confidence            4455666778889999999988999999999999999996544           368889999998 6999999986 45


Q ss_pred             ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      .++++|.|++|++|+...+                                        ..+.++.+|...|...+|+|.
T Consensus       119 ~~ltsSWD~TiKLW~~~r~----------------------------------------~Sv~Tf~gh~~~Iy~a~~sp~  158 (311)
T KOG0277|consen  119 IFLTSSWDGTIKLWDPNRP----------------------------------------NSVQTFNGHNSCIYQAAFSPH  158 (311)
T ss_pred             eEEeeccCCceEeecCCCC----------------------------------------cceEeecCCccEEEEEecCCC
Confidence            7888899999999998643                                        234779999999999999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      .+++|++++.|+++++||+|...+.  ..+..|...|.|+.|+..+.++|+||+.|+.|+.||+|++.     .++..+.
T Consensus       159 ~~nlfas~Sgd~~l~lwdvr~~gk~--~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~  231 (311)
T KOG0277|consen  159 IPNLFASASGDGTLRLWDVRSPGKF--MSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELN  231 (311)
T ss_pred             CCCeEEEccCCceEEEEEecCCCce--eEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeec
Confidence            9999999999999999999988643  33678999999999999899999999999999999999975     7899999


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      +|.-+|..|.|||....+||+++.|-+++|||.....              ..+....-|+.-|..+.|++..+..+|  
T Consensus       232 gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--------------s~~e~~~~HtEFv~g~Dws~~~~~~vA--  295 (311)
T KOG0277|consen  232 GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--------------SAIETVDHHTEFVCGLDWSLFDPGQVA--  295 (311)
T ss_pred             CCceEEEEEecCcchhhHhhhccccceEEecccccch--------------hhhhhhhccceEEeccccccccCceee--
Confidence            9999999999999998899999999999999998642              233344568888999999999888888  


Q ss_pred             cCCCCCCCCCCeEEEeec
Q 010997          450 SDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~  467 (496)
                           +.|+|..++||+.
T Consensus       296 -----s~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  296 -----STGWDELLYVWNP  308 (311)
T ss_pred             -----ecccccceeeecc
Confidence                 5566799999986

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.1e-37  Score=294.31  Aligned_cols=251  Identities=22%  Similarity=0.439  Sum_probs=218.3

Q ss_pred             cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      .......+|.|+|..++|+| +.++|++++.|++|++|.+.+.            .....++||.. +|+.+.|+|.|-|
T Consensus       442 ~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~------------s~~V~y~GH~~-PVwdV~F~P~GyY  507 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTW------------SCLVIYKGHLA-PVWDVQFAPRGYY  507 (707)
T ss_pred             ceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccc------------eeEEEecCCCc-ceeeEEecCCceE
Confidence            34455899999999999999 8889999999999999999998            67788999998 8999999999999


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      |||||.|++.++|....                                        ..|++.+.+|...|.|+.|||+.
T Consensus       508 Fatas~D~tArLWs~d~----------------------------------------~~PlRifaghlsDV~cv~FHPNs  547 (707)
T KOG0263|consen  508 FATASHDQTARLWSTDH----------------------------------------NKPLRIFAGHLSDVDCVSFHPNS  547 (707)
T ss_pred             EEecCCCceeeeeeccc----------------------------------------CCchhhhcccccccceEEECCcc
Confidence            99999999999999863                                        34568899999999999999998


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                       +++++||.|.+|++||+.++.  .++.+.+|.++|.+++|+| +|.+||+|+.||.|.+||+.+      +.++..+.+
T Consensus       548 -~Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~------~~~v~~l~~  617 (707)
T KOG0263|consen  548 -NYVATGSSDRTVRLWDVSTGN--SVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLAN------GSLVKQLKG  617 (707)
T ss_pred             -cccccCCCCceEEEEEcCCCc--EEEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCC------Ccchhhhhc
Confidence             899999999999999999998  6888899999999999999 999999999999999999999      899999999


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCC---------CCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP---------RTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      |++.|.+|.|+.+|. +||+|+.|..|++||+...........         .+......++..+..-..+|..+.|..-
T Consensus       618 Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftrr  696 (707)
T KOG0263|consen  618 HTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRR  696 (707)
T ss_pred             ccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEecc
Confidence            999999999999998 789999999999999987544411111         1112333466677777779999999874


Q ss_pred             CCcEEE
Q 010997          442 DPWTVV  447 (496)
Q Consensus       442 ~~~l~~  447 (496)
                      + .+++
T Consensus       697 N-l~L~  701 (707)
T KOG0263|consen  697 N-LLLA  701 (707)
T ss_pred             c-eeEE
Confidence            3 4443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-36  Score=254.12  Aligned_cols=278  Identities=18%  Similarity=0.288  Sum_probs=218.3

Q ss_pred             CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997           94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ  173 (496)
Q Consensus        94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~  173 (496)
                      +.+.+..+.+|++..-             +.+-   -.....+.+|.-.|+.+..++ ++++.++++.|+++++||+.++
T Consensus        33 sasrDk~ii~W~L~~d-------------d~~~---G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g   95 (315)
T KOG0279|consen   33 SASRDKTIIVWKLTSD-------------DIKY---GVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATG   95 (315)
T ss_pred             EcccceEEEEEEeccC-------------cccc---CceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCC
Confidence            3457777888876431             0000   112345568999999999999 9999999999999999999998


Q ss_pred             CCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCC
Q 010997          174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP  253 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (496)
                                  ++...|.||.. .|.+++|++|++.|+||++|++|++|++-....                       
T Consensus        96 ------------~~t~~f~GH~~-dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-----------------------  139 (315)
T KOG0279|consen   96 ------------ESTRRFVGHTK-DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-----------------------  139 (315)
T ss_pred             ------------cEEEEEEecCC-ceEEEEecCCCceeecCCCcceeeeeeecccEE-----------------------
Confidence                        67788999998 699999999999999999999999999864321                       


Q ss_pred             CCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccCC-CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEE
Q 010997          254 KPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD  330 (496)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~  330 (496)
                                        .++.  .+.+.|+|+.|+|.. ..+|++++.|++|++||+++.+  ....+.+|...++.++
T Consensus       140 ------------------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~--l~~~~~gh~~~v~t~~  199 (315)
T KOG0279|consen  140 ------------------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ--LRTTFIGHSGYVNTVT  199 (315)
T ss_pred             ------------------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc--hhhccccccccEEEEE
Confidence                              2222  237899999999984 3689999999999999999887  6777889999999999


Q ss_pred             ecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997          331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  410 (496)
Q Consensus       331 ~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~  410 (496)
                      ++| +|.+.++|+.||.+.+||++.      ++.+..+. |...|.+++|+|+... | ++..+..|+|||+.... ...
T Consensus       200 vSp-DGslcasGgkdg~~~LwdL~~------~k~lysl~-a~~~v~sl~fspnryw-L-~~at~~sIkIwdl~~~~-~v~  268 (315)
T KOG0279|consen  200 VSP-DGSLCASGGKDGEAMLWDLNE------GKNLYSLE-AFDIVNSLCFSPNRYW-L-CAATATSIKIWDLESKA-VVE  268 (315)
T ss_pred             ECC-CCCEEecCCCCceEEEEEccC------CceeEecc-CCCeEeeEEecCCcee-E-eeccCCceEEEeccchh-hhh
Confidence            999 999999999999999999999      77877776 7899999999999764 4 34446679999998842 221


Q ss_pred             CCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ....+...+     ....-.....+++|+++|..|+        +|-.||.|++|.+.
T Consensus       269 ~l~~d~~g~-----s~~~~~~~clslaws~dG~tLf--------~g~td~~irv~qv~  313 (315)
T KOG0279|consen  269 ELKLDGIGP-----SSKAGDPICLSLAWSADGQTLF--------AGYTDNVIRVWQVA  313 (315)
T ss_pred             hcccccccc-----ccccCCcEEEEEEEcCCCcEEE--------eeecCCcEEEEEee
Confidence            111110011     1111223456899999999988        66778999999986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.3e-37  Score=290.62  Aligned_cols=275  Identities=25%  Similarity=0.475  Sum_probs=241.2

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ++.|..++|..++|.-.+.++||.+++.+.+++|++.+.            .+ ..+.||++ .|.++....+|-+|+||
T Consensus       318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~------------~c-~ii~GH~e-~vlSL~~~~~g~llat~  383 (775)
T KOG0319|consen  318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS------------YC-QIIPGHTE-AVLSLDVWSSGDLLATG  383 (775)
T ss_pred             hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCC------------ce-EEEeCchh-heeeeeecccCcEEEEe
Confidence            456788999999998778899999999999999988776            22 27899998 78999966677899999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.|+++++|.+++...                                    ...++....+|...|.+++++..+..+|
T Consensus       384 sKD~svilWr~~~~~~------------------------------------~~~~~a~~~gH~~svgava~~~~~asff  427 (775)
T KOG0319|consen  384 SKDKSVILWRLNNNCS------------------------------------KSLCVAQANGHTNSVGAVAGSKLGASFF  427 (775)
T ss_pred             cCCceEEEEEecCCcc------------------------------------hhhhhhhhcccccccceeeecccCccEE
Confidence            9999999999854321                                    2223456789999999999999888999


Q ss_pred             EEEcCCCeEEEEEccCCC---ccce----eeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          295 CSVGDDSCLILWDARVGT---SPVI----KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~---~~~~----~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      +++|.|+++++|++...+   .+..    .....|...|+|++.+| +..++||||.|.+.+||++.+      ...+.+
T Consensus       428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~------~~l~~v  500 (775)
T KOG0319|consen  428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ------LRLLGV  500 (775)
T ss_pred             EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccC------ceEEEE
Confidence            999999999999998732   1122    24468999999999999 999999999999999999997      789999


Q ss_pred             eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                      +.+|+..|.+|.|+|..+ ++||+|.|++|+||.+.+.               .++.++.||...|..+.|-.++..++ 
T Consensus       501 LsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~f---------------SClkT~eGH~~aVlra~F~~~~~qli-  563 (775)
T KOG0319|consen  501 LSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSISTF---------------SCLKTFEGHTSAVLRASFIRNGKQLI-  563 (775)
T ss_pred             eeCCccceEEEEeccccc-eeEeccCCceEEEEEeccc---------------eeeeeecCccceeEeeeeeeCCcEEE-
Confidence            999999999999999988 7899999999999999986               78889999999999999999999888 


Q ss_pred             EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                             |+|.||.|+||++.      +.+++.++++|.+.|++++.+|
T Consensus       564 -------S~~adGliKlWnik------t~eC~~tlD~H~DrvWaL~~~~  599 (775)
T KOG0319|consen  564 -------SAGADGLIKLWNIK------TNECEMTLDAHNDRVWALSVSP  599 (775)
T ss_pred             -------eccCCCcEEEEecc------chhhhhhhhhccceeEEEeecC
Confidence                   78888999999999      8999999999999999998775

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-37  Score=275.61  Aligned_cols=247  Identities=22%  Similarity=0.394  Sum_probs=215.1

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~  215 (496)
                      ..+|..+|.++.|++ ++..+++|..+|.|++|+..-.             .+..+.+|+...|.+++|+|+...|++|+
T Consensus       134 lQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmn-------------nVk~~~ahh~eaIRdlafSpnDskF~t~S  199 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMN-------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCS  199 (464)
T ss_pred             hhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchh-------------hhHHhhHhhhhhhheeccCCCCceeEEec
Confidence            458999999999999 9999999999999999997654             34566777766899999999999999999


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      .||+|+|||......                                        ...+.+|.-.|.+++|+|.. .+++
T Consensus       200 dDg~ikiWdf~~~ke----------------------------------------e~vL~GHgwdVksvdWHP~k-gLia  238 (464)
T KOG0284|consen  200 DDGTIKIWDFRMPKE----------------------------------------ERVLRGHGWDVKSVDWHPTK-GLIA  238 (464)
T ss_pred             CCCeEEEEeccCCch----------------------------------------hheeccCCCCcceeccCCcc-ceeE
Confidence            999999999874322                                        25678999999999999998 6999


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  375 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i  375 (496)
                      ++|.|..|++||.+++.  ++.++..|...|..+.|+| ++++|+++|.|..++++|+|+      -+.+.++++|+..|
T Consensus       239 sgskDnlVKlWDprSg~--cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~------mkEl~~~r~Hkkdv  309 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRSGS--CLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRT------MKELFTYRGHKKDV  309 (464)
T ss_pred             EccCCceeEeecCCCcc--hhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhH------hHHHHHhhcchhhh
Confidence            99999999999999999  7778889999999999999 889999999999999999997      46788999999999


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997          376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  455 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s  455 (496)
                      +++.|+|-...||++|+.||.|..|.+... +             .+...-.+|...|++++|+|-| .+++       +
T Consensus       310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~-------------p~~~i~~AHd~~iwsl~~hPlG-hil~-------t  367 (464)
T KOG0284|consen  310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLE-E-------------PLGEIPPAHDGEIWSLAYHPLG-HILA-------T  367 (464)
T ss_pred             eeeccccccccceeeccCCCceEEEecccc-c-------------cccCCCcccccceeeeeccccc-eeEe-------e
Confidence            999999998889999999999999999742 1             1122235799999999999966 5666       5


Q ss_pred             CCCCCeEEEeecC
Q 010997          456 TGGGGTLQIWRMS  468 (496)
Q Consensus       456 gg~Dg~i~iw~~~  468 (496)
                      |+.|.++++|.-.
T Consensus       368 gsnd~t~rfw~r~  380 (464)
T KOG0284|consen  368 GSNDRTVRFWTRN  380 (464)
T ss_pred             cCCCcceeeeccC
Confidence            5556999999865

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.8e-35  Score=247.72  Aligned_cols=282  Identities=23%  Similarity=0.388  Sum_probs=231.5

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE-ecCCCCcceeeeecCCCCc
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l-~~h~~~~v~~l~~~p~~~~  210 (496)
                      .+..+.+|++.|..++|+|..|.+||+|+.|..|+||+.....         ...+...+ .+|+. .|..++|+|.|++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~---------s~~ck~vld~~hkr-sVRsvAwsp~g~~   75 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD---------SWTCKTVLDDGHKR-SVRSVAWSPHGRY   75 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC---------cEEEEEeccccchh-eeeeeeecCCCcE
Confidence            4556779999999999999548899999999999999998531         11222233 46776 7999999999999


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      |++||.|.++.||.-..+                                      ..+.+.++.+|...|.+++|+++|
T Consensus        76 La~aSFD~t~~Iw~k~~~--------------------------------------efecv~~lEGHEnEVK~Vaws~sG  117 (312)
T KOG0645|consen   76 LASASFDATVVIWKKEDG--------------------------------------EFECVATLEGHENEVKCVAWSASG  117 (312)
T ss_pred             EEEeeccceEEEeecCCC--------------------------------------ceeEEeeeeccccceeEEEEcCCC
Confidence            999999999999976532                                      344568899999999999999999


Q ss_pred             CceEEEEcCCCeEEEEEccCCC-ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          291 AQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                       ++||+|+.|+.|-||.+.... ..+...+..|...|..+.|+| ...+|++++.|.+|++|+-....   ...++.++.
T Consensus       118 -~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dd---dW~c~~tl~  192 (312)
T KOG0645|consen  118 -NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDD---DWECVQTLD  192 (312)
T ss_pred             -CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCC---CeeEEEEec
Confidence             899999999999999987543 346677889999999999999 89999999999999999877311   167899999


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      +|...|.+++|+|.|.. |++++.|++|+||-+...                +   ..-|...++.++|. +  .+||  
T Consensus       193 g~~~TVW~~~F~~~G~r-l~s~sdD~tv~Iw~~~~~----------------~---~~~~sr~~Y~v~W~-~--~~Ia--  247 (312)
T KOG0645|consen  193 GHENTVWSLAFDNIGSR-LVSCSDDGTVSIWRLYTD----------------L---SGMHSRALYDVPWD-N--GVIA--  247 (312)
T ss_pred             CccceEEEEEecCCCce-EEEecCCcceEeeeeccC----------------c---chhcccceEeeeec-c--cceE--
Confidence            99999999999999986 579999999999997642                0   13467889999998 3  3566  


Q ss_pred             cCCCCCCCCCCeEEEeecCCCCcCCchHHHH-HHHhccceEEEeccCC
Q 010997          450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP  496 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~-~l~~h~~~v~~~~~sP  496 (496)
                           |+|.|+.|++|.-....-.+.-+++. .-..|...|++|+|.|
T Consensus       248 -----S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p  290 (312)
T KOG0645|consen  248 -----SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP  290 (312)
T ss_pred             -----eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC
Confidence                 56667999999988655555555555 4567888999999987

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-36  Score=250.57  Aligned_cols=269  Identities=20%  Similarity=0.337  Sum_probs=225.3

Q ss_pred             eEEEecCCCCcEEEEEeC-------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEec
Q 010997          144 NRIRELPQNTKIVATHTD-------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGG  215 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~  215 (496)
                      .++.|+|.-.+.||.+..       .|.+.|-++...+.         ......+.-  ...++.++|+++ .+.+++++
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g---------i~e~~s~d~--~D~LfdV~Wse~~e~~~~~a~   80 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG---------IQECQSYDT--EDGLFDVAWSENHENQVIAAS   80 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCC---------eEEEEeeec--ccceeEeeecCCCcceEEEEe
Confidence            478899966666665533       67899999864311         111222222  235899999997 55888999


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      .||++++||+.                                       ....|+..++.|..+|.++.|++.....++
T Consensus        81 GDGSLrl~d~~---------------------------------------~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l  121 (311)
T KOG0277|consen   81 GDGSLRLFDLT---------------------------------------MPSKPIHKFKEHKREVYSVDWNTVRRRIFL  121 (311)
T ss_pred             cCceEEEeccC---------------------------------------CCCcchhHHHhhhhheEEeccccccceeEE
Confidence            99999999954                                       233467889999999999999998778899


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  375 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i  375 (496)
                      +++.|++|++||...+.  .+.++.+|...|...+|+|..+++++++|.|+.+++||++.+     ++ ...+..|...|
T Consensus       122 tsSWD~TiKLW~~~r~~--Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-----gk-~~~i~ah~~Ei  193 (311)
T KOG0277|consen  122 TSSWDGTIKLWDPNRPN--SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-----GK-FMSIEAHNSEI  193 (311)
T ss_pred             eeccCCceEeecCCCCc--ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-----Cc-eeEEEecccee
Confidence            99999999999998777  677899999999999999999999999999999999999984     23 34489999999


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997          376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  455 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s  455 (496)
                      .++.|+....++++||+.|+.|++||++...              ..++.+.||.-.|..+.|+|....++||+|.|   
T Consensus       194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD---  256 (311)
T KOG0277|consen  194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--------------TPLFELNGHGLAVRKVKFSPHHASLLASASYD---  256 (311)
T ss_pred             EeecccccCCcEEEecCCCceEEEEehhhcc--------------ccceeecCCceEEEEEecCcchhhHhhhcccc---
Confidence            9999999999999999999999999999852              45778899999999999999999999987776   


Q ss_pred             CCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          456 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       456 gg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                          -+++|||+..     ....+.+.+.|+.-|..++||+
T Consensus       257 ----mT~riw~~~~-----~ds~~e~~~~HtEFv~g~Dws~  288 (311)
T KOG0277|consen  257 ----MTVRIWDPER-----QDSAIETVDHHTEFVCGLDWSL  288 (311)
T ss_pred             ----ceEEeccccc-----chhhhhhhhccceEEecccccc
Confidence                9999999984     4678889999999999999986

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.9e-36  Score=270.87  Aligned_cols=282  Identities=18%  Similarity=0.350  Sum_probs=228.4

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec---CCCCcceeeeecCCCC
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG---HQDNAEFALAMCPTEP  209 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~---h~~~~v~~l~~~p~~~  209 (496)
                      ..+.+.|..+|.+.+|.|-...++|+|+.|-..++|++..........  ...+......+   .....|++|+|+.+|.
T Consensus       171 ~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q--~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~  248 (524)
T KOG0273|consen  171 KAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ--LVLRHCIREGGKSVPSNKDVTSLDWNNDGT  248 (524)
T ss_pred             ceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh--hhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence            345667999999999999666699999999999999998531111100  00000001111   1223599999999999


Q ss_pred             ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      .||+|+.||.+++|+.....                                         +.++..|.++|.++.|+..
T Consensus       249 ~LatG~~~G~~riw~~~G~l-----------------------------------------~~tl~~HkgPI~slKWnk~  287 (524)
T KOG0273|consen  249 LLATGSEDGEARIWNKDGNL-----------------------------------------ISTLGQHKGPIFSLKWNKK  287 (524)
T ss_pred             eEEEeecCcEEEEEecCchh-----------------------------------------hhhhhccCCceEEEEEcCC
Confidence            99999999999999986432                                         3667789999999999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCc---------------------------------------cceeeeccCCCCeEEEE
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTS---------------------------------------PVIKVEKAHDADLHCVD  330 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~---------------------------------------~~~~~~~~~~~~v~~i~  330 (496)
                      | ++|++++.|+++.+||..++..                                       ....++.+|...|+++.
T Consensus       288 G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk  366 (524)
T KOG0273|consen  288 G-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK  366 (524)
T ss_pred             C-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence            8 8999999999999999865431                                       12345568999999999


Q ss_pred             ecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCC--------CEEEEEeCCCcEEEEEC
Q 010997          331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS--------SVFGSSAEDGLLNIWDY  402 (496)
Q Consensus       331 ~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~--------~llas~~~dg~i~iwd~  402 (496)
                      |+| .+.+|++++.|++++||.+..      ....+.+.+|...|..+.|+|.|.        .++++++.|++|++||+
T Consensus       367 ~n~-tg~LLaS~SdD~TlkiWs~~~------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv  439 (524)
T KOG0273|consen  367 WNP-TGSLLASCSDDGTLKIWSMGQ------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV  439 (524)
T ss_pred             ECC-CCceEEEecCCCeeEeeecCC------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence            999 999999999999999999888      788999999999999999999763        36789999999999999


Q ss_pred             CCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH
Q 010997          403 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  482 (496)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l  482 (496)
                      ..+               .+++.+..|..+|++++|+|++.+++        +|+.||.|.||+..      .++.++.+
T Consensus       440 ~~g---------------v~i~~f~kH~~pVysvafS~~g~ylA--------sGs~dg~V~iws~~------~~~l~~s~  490 (524)
T KOG0273|consen  440 ESG---------------VPIHTLMKHQEPVYSVAFSPNGRYLA--------SGSLDGCVHIWSTK------TGKLVKSY  490 (524)
T ss_pred             cCC---------------ceeEeeccCCCceEEEEecCCCcEEE--------ecCCCCeeEecccc------chheeEee
Confidence            885               67888999999999999999999876        78888999999999      77877777


Q ss_pred             HhccceEEEeccC
Q 010997          483 EKFKAHVISCTSK  495 (496)
Q Consensus       483 ~~h~~~v~~~~~s  495 (496)
                      .+ .+.|..|+|+
T Consensus       491 ~~-~~~Ifel~Wn  502 (524)
T KOG0273|consen  491 QG-TGGIFELCWN  502 (524)
T ss_pred             cC-CCeEEEEEEc
Confidence            64 3558888875

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-34  Score=244.24  Aligned_cols=291  Identities=18%  Similarity=0.280  Sum_probs=230.2

Q ss_pred             eEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEe
Q 010997           69 SCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRE  148 (496)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  148 (496)
                      .+.|.|..        -+ ++   ++++.++.++||+..-..                 .-..+.+---+|+..|++++|
T Consensus        19 ~~awhp~~--------g~-il---Ascg~Dk~vriw~~~~~~-----------------s~~ck~vld~~hkrsVRsvAw   69 (312)
T KOG0645|consen   19 SVAWHPGK--------GV-IL---ASCGTDKAVRIWSTSSGD-----------------SWTCKTVLDDGHKRSVRSVAW   69 (312)
T ss_pred             EEEeccCC--------ce-EE---EeecCCceEEEEecCCCC-----------------cEEEEEeccccchheeeeeee
Confidence            78888863        11 22   456788999999864211                 111222233479999999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCc
Q 010997          149 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH  228 (496)
Q Consensus       149 ~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~  228 (496)
                      +| .+++||+|+.|.++.||.-..+          ..+++.+++||.. .|.|++|+++|++||+|++|++|-||.+...
T Consensus        70 sp-~g~~La~aSFD~t~~Iw~k~~~----------efecv~~lEGHEn-EVK~Vaws~sG~~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   70 SP-HGRYLASASFDATVVIWKKEDG----------EFECVATLEGHEN-EVKCVAWSASGNYLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             cC-CCcEEEEeeccceEEEeecCCC----------ceeEEeeeecccc-ceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence            99 8899999999999999987755          3467889999998 7999999999999999999999999998732


Q ss_pred             cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEc
Q 010997          229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA  308 (496)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~  308 (496)
                                                           ...+....+.+|...|..+.|||.. .+|++++.|.+|++|+-
T Consensus       138 -------------------------------------dEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~  179 (312)
T KOG0645|consen  138 -------------------------------------DEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRD  179 (312)
T ss_pred             -------------------------------------CcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEee
Confidence                                                 2344557899999999999999987 79999999999999987


Q ss_pred             c-CCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCE
Q 010997          309 R-VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV  387 (496)
Q Consensus       309 ~-~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l  387 (496)
                      . .....+..++.+|...|.+++|++ .+..|++++.|++|+||-...      .-    -..|..+++.+.|. ++  +
T Consensus       180 ~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~------~~----~~~~sr~~Y~v~W~-~~--~  245 (312)
T KOG0645|consen  180 EDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYT------DL----SGMHSRALYDVPWD-NG--V  245 (312)
T ss_pred             cCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeecc------Cc----chhcccceEeeeec-cc--c
Confidence            7 555567888899999999999999 899999999999999998664      11    12377899999998 54  6


Q ss_pred             EEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe-eEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997          388 FGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG-LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       388 las~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~  466 (496)
                      |||++.|+.|++|.-......         .... +......|...|++++|+|....+++|+++       ||.|++|.
T Consensus       246 IaS~ggD~~i~lf~~s~~~d~---------p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D-------DG~v~~W~  309 (312)
T KOG0645|consen  246 IASGGGDDAIRLFKESDSPDE---------PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD-------DGIVNFWE  309 (312)
T ss_pred             eEeccCCCEEEEEEecCCCCC---------chHHHHHhhhcccccccceEEEcCCCCCceeecCC-------CceEEEEE
Confidence            899999999999987642110         0111 122345688899999999976777776555       49999998


Q ss_pred             cC
Q 010997          467 MS  468 (496)
Q Consensus       467 ~~  468 (496)
                      +.
T Consensus       310 l~  311 (312)
T KOG0645|consen  310 LE  311 (312)
T ss_pred             ec
Confidence            75

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.3e-36  Score=260.26  Aligned_cols=244  Identities=26%  Similarity=0.462  Sum_probs=218.5

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~  215 (496)
                      +.+|.+.|.|+++.| ....|+||+.|++|+|||+.++            +...++.||.. .|..+++++...||++++
T Consensus       147 i~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg------------~LkltltGhi~-~vr~vavS~rHpYlFs~g  212 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATG------------QLKLTLTGHIE-TVRGVAVSKRHPYLFSAG  212 (460)
T ss_pred             hhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccC------------eEEEeecchhh-eeeeeeecccCceEEEec
Confidence            458999999999999 6789999999999999999999            77789999998 799999999999999999


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      .|+.|+.||++..+.                                        ++.+.+|-..|.+++.+|.- ..|+
T Consensus       213 edk~VKCwDLe~nkv----------------------------------------IR~YhGHlS~V~~L~lhPTl-dvl~  251 (460)
T KOG0285|consen  213 EDKQVKCWDLEYNKV----------------------------------------IRHYHGHLSGVYCLDLHPTL-DVLV  251 (460)
T ss_pred             CCCeeEEEechhhhh----------------------------------------HHHhccccceeEEEeccccc-eeEE
Confidence            999999999986543                                        36788999999999999998 7999


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  375 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i  375 (496)
                      +|+.|.++++||+|+..  .+..+.+|..+|..+.+.| ....+++|+.|++|++||++.      ++...++..|...|
T Consensus       252 t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~a------gkt~~tlt~hkksv  322 (460)
T KOG0285|consen  252 TGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRA------GKTMITLTHHKKSV  322 (460)
T ss_pred             ecCCcceEEEeeecccc--eEEEecCCCCcceeEEeec-CCCceEEecCCceEEEeeecc------CceeEeeeccccee
Confidence            99999999999999988  6788899999999999999 667789999999999999999      88899999999999


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997          376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  455 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s  455 (496)
                      .+++.+|... +||+++.| .|+-|++..+               ..+..+.+|..-|+.++.+.++ .++        +
T Consensus       323 ral~lhP~e~-~fASas~d-nik~w~~p~g---------------~f~~nlsgh~~iintl~~nsD~-v~~--------~  376 (460)
T KOG0285|consen  323 RALCLHPKEN-LFASASPD-NIKQWKLPEG---------------EFLQNLSGHNAIINTLSVNSDG-VLV--------S  376 (460)
T ss_pred             eEEecCCchh-hhhccCCc-cceeccCCcc---------------chhhccccccceeeeeeeccCc-eEE--------E
Confidence            9999999976 68899977 5999999885               4455588999999999998754 444        5


Q ss_pred             CCCCCeEEEeecCC
Q 010997          456 TGGGGTLQIWRMSD  469 (496)
Q Consensus       456 gg~Dg~i~iw~~~~  469 (496)
                      ||..|.+.+||...
T Consensus       377 G~dng~~~fwdwks  390 (460)
T KOG0285|consen  377 GGDNGSIMFWDWKS  390 (460)
T ss_pred             cCCceEEEEEecCc
Confidence            66679999999973

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-35  Score=244.00  Aligned_cols=269  Identities=23%  Similarity=0.343  Sum_probs=230.1

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      +...+-.|+++|+.++|.- ++++.++++.|.+|++|+.-.+            .++.++.+|.. .|..++.+.|+..|
T Consensus         9 r~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg------------~liktYsghG~-EVlD~~~s~Dnskf   74 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRG------------ALIKTYSGHGH-EVLDAALSSDNSKF   74 (307)
T ss_pred             hceeecccccceEEEEEcc-CCCEEEEcCCCceEEeeccccc------------ceeeeecCCCc-eeeecccccccccc
Confidence            4445568999999999999 9999999999999999999888            77889999987 68999999999999


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ++|+.|+.|.+||+++++.                                        .+.+.+|.+.|+.++|+.+. 
T Consensus        75 ~s~GgDk~v~vwDV~TGkv----------------------------------------~Rr~rgH~aqVNtV~fNees-  113 (307)
T KOG0316|consen   75 ASCGGDKAVQVWDVNTGKV----------------------------------------DRRFRGHLAQVNTVRFNEES-  113 (307)
T ss_pred             ccCCCCceEEEEEcccCee----------------------------------------eeecccccceeeEEEecCcc-
Confidence            9999999999999987654                                        37889999999999999887 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      ..+++|+.|.++++||.|+.....++.+......|.+|..+   +..+++|+.||+++.||+|.      +.....+  .
T Consensus       114 SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~------G~l~sDy--~  182 (307)
T KOG0316|consen  114 SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRK------GTLSSDY--F  182 (307)
T ss_pred             eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeec------ceeehhh--c
Confidence            79999999999999999998877788888888999999985   57899999999999999998      5554444  4


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc--ceEEecCCCCcEEEEe
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV--VDFHWNASDPWTVVSV  449 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V--~~~~~~p~~~~l~~s~  449 (496)
                      ..+|++++|++++...| .++.|+++++-|-.++               +++....||...=  .+++++..... ++  
T Consensus       183 g~pit~vs~s~d~nc~L-a~~l~stlrLlDk~tG---------------klL~sYkGhkn~eykldc~l~qsdth-V~--  243 (307)
T KOG0316|consen  183 GHPITSVSFSKDGNCSL-ASSLDSTLRLLDKETG---------------KLLKSYKGHKNMEYKLDCCLNQSDTH-VF--  243 (307)
T ss_pred             CCcceeEEecCCCCEEE-Eeeccceeeecccchh---------------HHHHHhcccccceeeeeeeeccccee-EE--
Confidence            56899999999999766 7778999999998885               5666778887744  35666665554 44  


Q ss_pred             cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccce-EEEeccCC
Q 010997          450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH-VISCTSKP  496 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~-v~~~~~sP  496 (496)
                           +|+.||.|.+||+-      .+..+..+..+... |.+++++|
T Consensus       244 -----sgSEDG~Vy~wdLv------d~~~~sk~~~~~~v~v~dl~~hp  280 (307)
T KOG0316|consen  244 -----SGSEDGKVYFWDLV------DETQISKLSVVSTVIVTDLSCHP  280 (307)
T ss_pred             -----eccCCceEEEEEec------cceeeeeeccCCceeEEeeeccc
Confidence                 55556999999999      57778888888887 89999998

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.5e-34  Score=264.05  Aligned_cols=318  Identities=19%  Similarity=0.221  Sum_probs=239.3

Q ss_pred             cccc-eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe---cCCCCcceeeee
Q 010997          129 PFVK-KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT---GHQDNAEFALAM  204 (496)
Q Consensus       129 ~~~~-~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~---~h~~~~v~~l~~  204 (496)
                      |+++ ......|..-|+|++|+| |+.++||++.||.|.+||-.++            +.+..+.   +|.+ .|++|+|
T Consensus       178 PPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktg------------e~vg~l~~~~aHkG-sIfalsW  243 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTG------------EKVGELEDSDAHKG-SIFALSW  243 (603)
T ss_pred             CCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCc------------cEEEEecCCCCccc-cEEEEEE
Confidence            3444 344557999999999999 8999999999999999999888            4445555   8988 6999999


Q ss_pred             cCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCC----CCCCCCCCCCCCCCcCCeeeeecCCCc
Q 010997          205 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP----KPGDGNDKAADGPSVGPRGIYNGHEDT  280 (496)
Q Consensus       205 ~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~h~~~  280 (496)
                      +||+..|+|++.|.+++|||+.+..+......... .......++....    ....+.+.+.+.....+...+.+|...
T Consensus       244 sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~-v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~  322 (603)
T KOG0318|consen  244 SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST-VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS  322 (603)
T ss_pred             CCCCceEEEecCCceEEEEEeeccceEEEeecCCc-hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc
Confidence            99999999999999999999998755433322111 0000111111110    123456666677777788999999999


Q ss_pred             eeEEEEccCCCceEEEEcCCCeEEEEEccCCCccce--------------------------------------------
Q 010997          281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI--------------------------------------------  316 (496)
Q Consensus       281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------------------------------------------  316 (496)
                      |+++..+|++ .+|++|+.||.|.-||..++....+                                            
T Consensus       323 ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~  401 (603)
T KOG0318|consen  323 ITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV  401 (603)
T ss_pred             eeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce
Confidence            9999999999 8999999999999999876532100                                            


Q ss_pred             ---------------------------eeeccC--------CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997          317 ---------------------------KVEKAH--------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  361 (496)
Q Consensus       317 ---------------------------~~~~~~--------~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~  361 (496)
                                                 ..++.+        .-...+++++| ++..+|.|+.||.|+||.+....    
T Consensus       402 ~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~----  476 (603)
T KOG0318|consen  402 VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDE----  476 (603)
T ss_pred             eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCc----
Confidence                                       000000        11245788899 99999999999999999998632    


Q ss_pred             CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      .........|.++|+++++||++.+ ||+|...+.|.+||+.....              ......-|...|.+++|+|+
T Consensus       477 l~ee~~~~~h~a~iT~vaySpd~~y-la~~Da~rkvv~yd~~s~~~--------------~~~~w~FHtakI~~~aWsP~  541 (603)
T KOG0318|consen  477 LKEEAKLLEHRAAITDVAYSPDGAY-LAAGDASRKVVLYDVASREV--------------KTNRWAFHTAKINCVAWSPN  541 (603)
T ss_pred             ccceeeeecccCCceEEEECCCCcE-EEEeccCCcEEEEEcccCce--------------ecceeeeeeeeEEEEEeCCC
Confidence            2334456679999999999999995 68999999999999988411              12223448999999999997


Q ss_pred             CCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          442 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                      .. ++|       ||+.|..|.||++.+     ..+.+.-..+|...|+.|+|-
T Consensus       542 n~-~vA-------TGSlDt~Viiysv~k-----P~~~i~iknAH~~gVn~v~wl  582 (603)
T KOG0318|consen  542 NK-LVA-------TGSLDTNVIIYSVKK-----PAKHIIIKNAHLGGVNSVAWL  582 (603)
T ss_pred             ce-EEE-------eccccceEEEEEccC-----hhhheEeccccccCceeEEEe
Confidence            76 455       777779999999995     344477778899999999883

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6.3e-35  Score=286.87  Aligned_cols=267  Identities=26%  Similarity=0.450  Sum_probs=227.2

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      |...|.++.|+| +++.+++++.++.+++|+......          .....+.+|.. .|..++|+|++.++++|+.|+
T Consensus       158 ~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~----------~~~~~l~~h~~-~v~~~~fs~d~~~l~s~s~D~  225 (456)
T KOG0266|consen  158 ECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKS----------NLLRELSGHTR-GVSDVAFSPDGSYLLSGSDDK  225 (456)
T ss_pred             ccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccc----------hhhcccccccc-ceeeeEECCCCcEEEEecCCc
Confidence            378999999999 888999999999999999966521          24456688988 699999999999999999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      +|+|||+...                                       ...++++.+|...|++++|+|++ +++++|+
T Consensus       226 tiriwd~~~~---------------------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs  265 (456)
T KOG0266|consen  226 TLRIWDLKDD---------------------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGS  265 (456)
T ss_pred             eEEEeeccCC---------------------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEec
Confidence            9999999422                                       22347889999999999999999 8999999


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC--CceEeccCCCC--
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS--PINKFEGHSAA--  374 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~--~~~~~~~h~~~--  374 (496)
                      .|++|+|||+++++  +...+.+|...|++++|++ ++++|++++.|+.|++||+.+      +.  ++..+.++...  
T Consensus       266 ~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~  336 (456)
T KOG0266|consen  266 DDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLET------GSKLCLKLLSGAENSAP  336 (456)
T ss_pred             CCCcEEEEeccCCe--EEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCC------CceeeeecccCCCCCCc
Confidence            99999999999977  7888899999999999999 999999999999999999998      55  46677776665  


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCC---cceEEecCCCCcEEEEecC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK---VVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---V~~~~~~p~~~~l~~s~s~  451 (496)
                      +++++|+|++.++ ++++.|+.+++||+...               .......+|...   +.+...++.+.+++     
T Consensus       337 ~~~~~fsp~~~~l-l~~~~d~~~~~w~l~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----  395 (456)
T KOG0266|consen  337 VTSVQFSPNGKYL-LSASLDRTLKLWDLRSG---------------KSVGTYTGHSNLVRCIFSPTLSTGGKLIY-----  395 (456)
T ss_pred             eeEEEECCCCcEE-EEecCCCeEEEEEccCC---------------cceeeecccCCcceeEecccccCCCCeEE-----
Confidence            9999999999975 58989999999999975               344455666654   33444466666655     


Q ss_pred             CCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhc-cceEEEeccCC
Q 010997          452 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAHVISCTSKP  496 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h-~~~v~~~~~sP  496 (496)
                         +|+.|+.|++|++.      ++..+..+.+| ...|..++++|
T Consensus       396 ---sg~~d~~v~~~~~~------s~~~~~~l~~h~~~~~~~~~~~~  432 (456)
T KOG0266|consen  396 ---SGSEDGSVYVWDSS------SGGILQRLEGHSKAAVSDLSSHP  432 (456)
T ss_pred             ---EEeCCceEEEEeCC------ccchhhhhcCCCCCceeccccCC
Confidence               66777999999999      78999999999 88999999887

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.4e-35  Score=257.47  Aligned_cols=313  Identities=20%  Similarity=0.406  Sum_probs=241.4

Q ss_pred             cccCChhHhHhhhhCcCCCCcceEeccCCcccCCCcceEEEEEEe-----ecCCCCCCeEEEEEEeccCcchhhhccccc
Q 010997           47 WKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSE-----QTDGSVPNTLVIANCEVVKPRVAAAEHISQ  121 (496)
Q Consensus        47 w~~~~~~ly~~~~~~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~  121 (496)
                      .+.+=|++|+.+.+.+-.|-+-..-- ..+...+.. ..-+|.-.     .-+|..+|++.||+...             
T Consensus       162 ~~~l~pki~~di~~idsNWr~Gr~~~-~rinc~Se~-skgVYClQYDD~kiVSGlrDnTikiWD~n~-------------  226 (499)
T KOG0281|consen  162 YRLLYPKIIQDIETIESNWRCGRHLL-QRINCRSEN-SKGVYCLQYDDEKIVSGLRDNTIKIWDKNS-------------  226 (499)
T ss_pred             hhhhhHHHHHHHhhhhcchhccceee-eeecCCccc-CCceEEEEecchhhhcccccCceEEecccc-------------
Confidence            34556888888888888885422210 011111111 11222211     24678888999887532             


Q ss_pred             cCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCccee
Q 010997          122 FNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA  201 (496)
Q Consensus       122 ~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~  201 (496)
                              ......+.||+|.|.|+.|   +.++|++|+.|.+|+|||++++            +++.++-+|.+ +|..
T Consensus       227 --------~~c~~~L~GHtGSVLCLqy---d~rviisGSSDsTvrvWDv~tg------------e~l~tlihHce-aVLh  282 (499)
T KOG0281|consen  227 --------LECLKILTGHTGSVLCLQY---DERVIVSGSSDSTVRVWDVNTG------------EPLNTLIHHCE-AVLH  282 (499)
T ss_pred             --------HHHHHhhhcCCCcEEeeec---cceEEEecCCCceEEEEeccCC------------chhhHHhhhcc-eeEE
Confidence                    1123356799999999999   5579999999999999999999            78888999998 6899


Q ss_pred             eeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCce
Q 010997          202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV  281 (496)
Q Consensus       202 l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  281 (496)
                      +.|+  +.+++|++.|.+|.+||+....                                     .....+.+.+|...|
T Consensus       283 lrf~--ng~mvtcSkDrsiaVWdm~sps-------------------------------------~it~rrVLvGHrAaV  323 (499)
T KOG0281|consen  283 LRFS--NGYMVTCSKDRSIAVWDMASPT-------------------------------------DITLRRVLVGHRAAV  323 (499)
T ss_pred             EEEe--CCEEEEecCCceeEEEeccCch-------------------------------------HHHHHHHHhhhhhhe
Confidence            9995  5699999999999999997532                                     122336788999999


Q ss_pred             eEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997          282 EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  361 (496)
Q Consensus       282 ~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~  361 (496)
                      +.+.|+.   .++++++.|.+|++|++.+..  .+.++.+|...|-|+.+   .+.++++|+.|.+|++||+..      
T Consensus       324 NvVdfd~---kyIVsASgDRTikvW~~st~e--fvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~------  389 (499)
T KOG0281|consen  324 NVVDFDD---KYIVSASGDRTIKVWSTSTCE--FVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC------  389 (499)
T ss_pred             eeecccc---ceEEEecCCceEEEEecccee--eehhhhcccccceehhc---cCeEEEecCCCceEEEEeccc------
Confidence            9999963   689999999999999999988  78889999999999998   579999999999999999999      


Q ss_pred             CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      +.+++.+++|..-|.++.|...  . +++|+.||.|+|||+...-....      .....++..+..|.+.|..+.|.. 
T Consensus       390 G~cLRvLeGHEeLvRciRFd~k--r-IVSGaYDGkikvWdl~aaldpra------~~~~~Cl~~lv~hsgRVFrLQFD~-  459 (499)
T KOG0281|consen  390 GACLRVLEGHEELVRCIRFDNK--R-IVSGAYDGKIKVWDLQAALDPRA------PASTLCLRTLVEHSGRVFRLQFDE-  459 (499)
T ss_pred             cHHHHHHhchHHhhhheeecCc--e-eeeccccceEEEEecccccCCcc------cccchHHHhhhhccceeEEEeecc-
Confidence            9999999999999999999643  3 46999999999999987422111      011235566778999999999963 


Q ss_pred             CCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          442 DPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                        +-+++++.|       .+|-|||+.+.
T Consensus       460 --fqIvsssHd-------dtILiWdFl~~  479 (499)
T KOG0281|consen  460 --FQIISSSHD-------DTILIWDFLNG  479 (499)
T ss_pred             --eEEEeccCC-------CeEEEEEcCCC
Confidence              456655554       89999999753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-33  Score=268.44  Aligned_cols=375  Identities=17%  Similarity=0.264  Sum_probs=273.5

Q ss_pred             hhhCcCCCCcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEe
Q 010997           58 LANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTI  137 (496)
Q Consensus        58 ~~~~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (496)
                      ++++.+.-|.-+++|.|.         -+++..+     ..|.+.||...-  .          + .+.-.|+.......
T Consensus        90 lh~f~fk~~v~~i~fSPn---------g~~fav~-----~gn~lqiw~~P~--~----------~-~~~~~pFvl~r~~~  142 (893)
T KOG0291|consen   90 LHRFNFKRGVGAIKFSPN---------GKFFAVG-----CGNLLQIWHAPG--E----------I-KNEFNPFVLHRTYL  142 (893)
T ss_pred             eEEEeecCccceEEECCC---------CcEEEEE-----ecceeEEEecCc--c----------h-hcccCcceEeeeec
Confidence            345566668888888886         2332221     467888887532  1          1 11223455556678


Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      +|-..|.++.|+. |.++|++|+.|-+++||.+...++          -....+.||.+ .|.+..|..+...|++.+.|
T Consensus       143 g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~k~----------~~~~~l~gHkd-~VvacfF~~~~~~l~tvskd  210 (893)
T KOG0291|consen  143 GHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGNKN----------LFTYALNGHKD-YVVACFFGANSLDLYTVSKD  210 (893)
T ss_pred             CCccceeEEEecc-CCceEEeccccceEEEEEeccccc----------cceEeccCCCc-ceEEEEeccCcceEEEEecC
Confidence            9999999999999 899999999999999999988732          22457899998 67888899998899999999


Q ss_pred             CcEEEEecCCccccccC--------------Cccccc-------------cCCCCCcee---------ccCCCCCCCCCC
Q 010997          218 KSVVLWSIQDHITSSAT--------------DPATAK-------------SAGSSGSII---------KQSPKPGDGNDK  261 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~--------------~~~~~~-------------~~~~~~~~~---------~~~~~~~~~~~~  261 (496)
                      |.+.+|...........              ......             .......+.         ........+...
T Consensus       211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~  290 (893)
T KOG0291|consen  211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG  290 (893)
T ss_pred             ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence            99999988722100000              000000             000000000         001123345556


Q ss_pred             CCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc-CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE
Q 010997          262 AADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  340 (496)
Q Consensus       262 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~  340 (496)
                      ++..+....++.+.-...+|..+.|+..| ..++.|+ .=|.+.||+.++..  .+...++|...+++++++| +++++|
T Consensus       291 LyelP~f~lih~LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSp-Dgq~ia  366 (893)
T KOG0291|consen  291 LYELPDFNLIHSLSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSP-DGQLIA  366 (893)
T ss_pred             EEecCCceEEEEeecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccc--eeeeccccccceeeEEECC-CCcEEE
Confidence            67777888888888778899999999998 5666665 45899999999887  5667789999999999999 999999


Q ss_pred             EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC-----
Q 010997          341 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-----  415 (496)
Q Consensus       341 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~-----  415 (496)
                      ||+.||.|+|||.++      +-++.+|..|++.|+.++|+..+.. +.+++.||+|+.||+.....-.+.....     
T Consensus       367 TG~eDgKVKvWn~~S------gfC~vTFteHts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfs  439 (893)
T KOG0291|consen  367 TGAEDGKVKVWNTQS------GFCFVTFTEHTSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFS  439 (893)
T ss_pred             eccCCCcEEEEeccC------ceEEEEeccCCCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCCceeee
Confidence            999999999999999      8999999999999999999999985 5599999999999997643321111000     


Q ss_pred             ------------------------CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCC
Q 010997          416 ------------------------TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  471 (496)
Q Consensus       416 ------------------------~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~  471 (496)
                                              .....+++-.+.||.++|.+++|+|.+..|+        ||++|.+|++|++-.  
T Consensus       440 cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~La--------S~SWDkTVRiW~if~--  509 (893)
T KOG0291|consen  440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLA--------SGSWDKTVRIWDIFS--  509 (893)
T ss_pred             EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEE--------eccccceEEEEEeec--
Confidence                                    0013345667889999999999999888555        788889999999973  


Q ss_pred             cCCchHHHHHHHhccceEEEeccCC
Q 010997          472 YRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       472 ~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                         ....+.+++ +..-|++++|+|
T Consensus       510 ---s~~~vEtl~-i~sdvl~vsfrP  530 (893)
T KOG0291|consen  510 ---SSGTVETLE-IRSDVLAVSFRP  530 (893)
T ss_pred             ---cCceeeeEe-eccceeEEEEcC
Confidence               222344444 566788999987

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.2e-35  Score=266.02  Aligned_cols=279  Identities=18%  Similarity=0.295  Sum_probs=235.7

Q ss_pred             cccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC
Q 010997          129 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE  208 (496)
Q Consensus       129 ~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~  208 (496)
                      |...++..-+|+..|+++.|+|-.+.+|++++.|+.|+||++-...           +++.++.||.. +|..++|+++|
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----------~~lrtf~gH~k-~Vrd~~~s~~g  270 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----------RCLRTFKGHRK-PVRDASFNNCG  270 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----------ceehhhhcchh-hhhhhhccccC
Confidence            4556777889999999999999889999999999999999998742           77889999998 79999999999


Q ss_pred             CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      ..|+|+|.|+.|++||++++++....                                         .....++|+.|+|
T Consensus       271 ~~fLS~sfD~~lKlwDtETG~~~~~f-----------------------------------------~~~~~~~cvkf~p  309 (503)
T KOG0282|consen  271 TSFLSASFDRFLKLWDTETGQVLSRF-----------------------------------------HLDKVPTCVKFHP  309 (503)
T ss_pred             CeeeeeecceeeeeeccccceEEEEE-----------------------------------------ecCCCceeeecCC
Confidence            99999999999999999988764221                                         1234678999999


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      ++.++|++|+.|+.|+.||+|+++  ++..+..|-+.|+.+.|-+ ++..+++.+.|++++||+.+.      ..++..+
T Consensus       310 d~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~------~v~ik~i  380 (503)
T KOG0282|consen  310 DNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRI------PVPIKNI  380 (503)
T ss_pred             CCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCC------Cccchhh
Confidence            998999999999999999999998  7778888999999999999 999999999999999999998      3333322


Q ss_pred             -ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC--CcceEEecCCCCcE
Q 010997          369 -EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWT  445 (496)
Q Consensus       369 -~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~~~~~p~~~~l  445 (496)
                       ..+.....+|..+|++.+ +++=+.|+.|.+|.+...            .+...-..+.||..  --..+.|||+|.+|
T Consensus       381 ~~~~~hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~------------~r~nkkK~feGh~vaGys~~v~fSpDG~~l  447 (503)
T KOG0282|consen  381 ADPEMHTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPP------------FRLNKKKRFEGHSVAGYSCQVDFSPDGRTL  447 (503)
T ss_pred             cchhhccCcceecCCCCCe-ehhhccCceEEEEecccc------------cccCHhhhhcceeccCceeeEEEcCCCCeE
Confidence             223445668999999995 678888999999997653            12223334567754  34578999999987


Q ss_pred             EEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          446 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       446 ~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +        +|..||.+.+||..      +-.++..+++|.+++..++|||
T Consensus       448 ~--------SGdsdG~v~~wdwk------t~kl~~~lkah~~~ci~v~wHP  484 (503)
T KOG0282|consen  448 C--------SGDSDGKVNFWDWK------TTKLVSKLKAHDQPCIGVDWHP  484 (503)
T ss_pred             E--------eecCCccEEEeech------hhhhhhccccCCcceEEEEecC
Confidence            7        88888999999999      7899999999999999999998

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.4e-35  Score=256.11  Aligned_cols=259  Identities=20%  Similarity=0.388  Sum_probs=220.1

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      ....|.|+.|   +...+++|..|.+|+|||..+.            .+...+.||++ .|.|+.|  +.+.|++|+.|.
T Consensus       196 ~skgVYClQY---DD~kiVSGlrDnTikiWD~n~~------------~c~~~L~GHtG-SVLCLqy--d~rviisGSSDs  257 (499)
T KOG0281|consen  196 NSKGVYCLQY---DDEKIVSGLRDNTIKIWDKNSL------------ECLKILTGHTG-SVLCLQY--DERVIVSGSSDS  257 (499)
T ss_pred             cCCceEEEEe---cchhhhcccccCceEEeccccH------------HHHHhhhcCCC-cEEeeec--cceEEEecCCCc
Confidence            4568999999   5567999999999999999887            67778999999 5889988  567999999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      +|++||++++                                        +++.++.+|...|..+.|+.   .++++++
T Consensus       258 TvrvWDv~tg----------------------------------------e~l~tlihHceaVLhlrf~n---g~mvtcS  294 (499)
T KOG0281|consen  258 TVRVWDVNTG----------------------------------------EPLNTLIHHCEAVLHLRFSN---GYMVTCS  294 (499)
T ss_pred             eEEEEeccCC----------------------------------------chhhHHhhhcceeEEEEEeC---CEEEEec
Confidence            9999999865                                        34577889999999999973   5899999


Q ss_pred             CCCeEEEEEccCCCc-cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997          299 DDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  377 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~  377 (496)
                      .|.++.+||+.+... .+...+.+|...|+.+.|+   ..++++++.|.+|++|++.+      +..++++.+|.-.|.|
T Consensus       295 kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st------~efvRtl~gHkRGIAC  365 (499)
T KOG0281|consen  295 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTST------CEFVRTLNGHKRGIAC  365 (499)
T ss_pred             CCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccc------eeeehhhhccccccee
Confidence            999999999988752 2344567999999999996   46999999999999999999      8999999999999999


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  457 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg  457 (496)
                      +++.  ++ ++++|+.|.+|++||+..+               .++..+.||..-|.++.|+.  ..++        ||+
T Consensus       366 lQYr--~r-lvVSGSSDntIRlwdi~~G---------------~cLRvLeGHEeLvRciRFd~--krIV--------SGa  417 (499)
T KOG0281|consen  366 LQYR--DR-LVVSGSSDNTIRLWDIECG---------------ACLRVLEGHEELVRCIRFDN--KRIV--------SGA  417 (499)
T ss_pred             hhcc--Ce-EEEecCCCceEEEEecccc---------------HHHHHHhchHHhhhheeecC--ceee--------ecc
Confidence            9884  55 6789999999999999986               56777899999999999974  4555        777


Q ss_pred             CCCeEEEeecCCCCcC---CchHHHHHHHhccceEEEeccC
Q 010997          458 GGGTLQIWRMSDLIYR---PQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       458 ~Dg~i~iw~~~~~~~~---~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                      .||+|+|||+......   ...-++..+..|++.|..+.|.
T Consensus       418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             ccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence            7899999999744221   1234788999999999998873

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.2e-33  Score=233.40  Aligned_cols=258  Identities=15%  Similarity=0.314  Sum_probs=213.0

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      ..-+||+++.|-+|++|...++            .+..+++ |.+.-|+.|...|+++.||+++ ...||+||+++.   
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG------------~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~---   71 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTG------------ICSRTIQ-HPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSN---   71 (311)
T ss_pred             CceEEEeccCcceeeeeehhcC------------eEEEEEe-cCccceeeEEEcCCcchhhhcc-CCeeEEEEccCC---
Confidence            4568999999999999999999            6666665 4455799999999999999888 568999999853   


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG  311 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~  311 (496)
                                                         ...|+..|.+|...|+.+.|..+| ..+++|++||+++|||+|..
T Consensus        72 -----------------------------------np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~  115 (311)
T KOG0315|consen   72 -----------------------------------NPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSL  115 (311)
T ss_pred             -----------------------------------CCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCc
Confidence                                               334678999999999999999999 89999999999999999996


Q ss_pred             CccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-cCCCCEEEEEEcCCCCCEEEE
Q 010997          312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGS  390 (496)
Q Consensus       312 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~llas  390 (496)
                      .  +.+ ...|.++|+++..+| ++.-|++|..+|.|++||++.      ..+.+.+. .-..+|.++...|+|.. ++.
T Consensus       116 ~--~qR-~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~------~~c~~~liPe~~~~i~sl~v~~dgsm-l~a  184 (311)
T KOG0315|consen  116 S--CQR-NYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGE------NSCTHELIPEDDTSIQSLTVMPDGSM-LAA  184 (311)
T ss_pred             c--cch-hccCCCCcceEEecC-CcceEEeecCCCcEEEEEccC------CccccccCCCCCcceeeEEEcCCCcE-EEE
Confidence            5  333 346889999999999 899999999999999999998      34444443 23468999999999995 667


Q ss_pred             EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          391 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       391 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      +..-|..++|++-.. ..        ..+.+++..+..|.+.+..+.+||++.+|+        ++|.|.+++||+..+.
T Consensus       185 ~nnkG~cyvW~l~~~-~~--------~s~l~P~~k~~ah~~~il~C~lSPd~k~la--------t~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  185 ANNKGNCYVWRLLNH-QT--------ASELEPVHKFQAHNGHILRCLLSPDVKYLA--------TCSSDKTVKIWNTDDF  247 (311)
T ss_pred             ecCCccEEEEEccCC-Cc--------cccceEhhheecccceEEEEEECCCCcEEE--------eecCCceEEEEecCCc
Confidence            888999999999762 11        134456667889999999999999888765        4555699999999853


Q ss_pred             CcCCchHHHHHHHhccceEEEeccC
Q 010997          471 IYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       471 ~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                           -.....+++|+.-+++++||
T Consensus       248 -----~kle~~l~gh~rWvWdc~FS  267 (311)
T KOG0315|consen  248 -----FKLELVLTGHQRWVWDCAFS  267 (311)
T ss_pred             -----eeeEEEeecCCceEEeeeec
Confidence                 24446678999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-34  Score=249.58  Aligned_cols=247  Identities=21%  Similarity=0.372  Sum_probs=221.5

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .+.+|...|..|+|.. .+++||+++.|-.+++||.++.           .+++..+.+|.. .|.+++|-|.|.+|+|+
T Consensus       145 ~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~-----------~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~  211 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTF-----------FRCIKSLIGHEH-GVSSVFFLPLGDHILSC  211 (406)
T ss_pred             hhhccccceeEEEEec-CccEEEecCCccchhheeHHHH-----------HHHHHHhcCccc-ceeeEEEEecCCeeeec
Confidence            4568999999999999 8899999999989999999874           156677889987 68999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      ++|.+|+.|++.++-+                                        +.++.+|...|.-++.+.|| .++
T Consensus       212 srD~tik~We~~tg~c----------------------------------------v~t~~~h~ewvr~v~v~~DG-ti~  250 (406)
T KOG0295|consen  212 SRDNTIKAWECDTGYC----------------------------------------VKTFPGHSEWVRMVRVNQDG-TII  250 (406)
T ss_pred             ccccceeEEeccccee----------------------------------------EEeccCchHhEEEEEecCCe-eEE
Confidence            9999999999987644                                        47788999999999999999 899


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC--------------CCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--------------DDNLILTGSADNSVRMFDRRNLTSNG  360 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~--------------~~~~l~sgs~dg~i~iwd~~~~~~~~  360 (496)
                      ++|+.|.+|++|-+.+++  +...+..|+.+|-|++|-|.              .++++++++.|++|++||+.+     
T Consensus       251 As~s~dqtl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t-----  323 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST-----  323 (406)
T ss_pred             EecCCCceEEEEEeccch--hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC-----
Confidence            999999999999999887  55667799999999999763              236999999999999999999     


Q ss_pred             CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                       +.++.++.+|...|..++|+|.|+|| +|+.+|+++++||++..               +++..+..|..-|++++|+.
T Consensus       324 -g~cL~tL~ghdnwVr~~af~p~Gkyi-~ScaDDktlrvwdl~~~---------------~cmk~~~ah~hfvt~lDfh~  386 (406)
T KOG0295|consen  324 -GMCLFTLVGHDNWVRGVAFSPGGKYI-LSCADDKTLRVWDLKNL---------------QCMKTLEAHEHFVTSLDFHK  386 (406)
T ss_pred             -CeEEEEEecccceeeeeEEcCCCeEE-EEEecCCcEEEEEeccc---------------eeeeccCCCcceeEEEecCC
Confidence             89999999999999999999999986 59999999999999985               66777889999999999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          441 SDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       441 ~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      +-++++        ||+-|.++++|.-
T Consensus       387 ~~p~Vv--------TGsVdqt~KvwEc  405 (406)
T KOG0295|consen  387 TAPYVV--------TGSVDQTVKVWEC  405 (406)
T ss_pred             CCceEE--------eccccceeeeeec
Confidence            988777        8888999999963

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-33  Score=272.80  Aligned_cols=271  Identities=21%  Similarity=0.360  Sum_probs=229.2

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  219 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~  219 (496)
                      +..|-.++|+| ....+.++-.+|.|++||.+-+            .++..|..|.+ +|.+++|+|.+.+++||+.|-.
T Consensus         9 SsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~------------tli~rFdeHdG-pVRgv~FH~~qplFVSGGDDyk   74 (1202)
T KOG0292|consen    9 SSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMG------------TLIDRFDEHDG-PVRGVDFHPTQPLFVSGGDDYK   74 (1202)
T ss_pred             cccccceecCC-CCCEEEEeecCceeeeehhhhh------------hHHhhhhccCC-ccceeeecCCCCeEEecCCccE
Confidence            45688999999 6668889999999999999887            66778899988 8999999999999999999999


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      |++|+..+..+                                        +.++.+|.+-|..+.||+.- -.++++|+
T Consensus        75 IkVWnYk~rrc----------------------------------------lftL~GHlDYVRt~~FHhey-PWIlSASD  113 (1202)
T KOG0292|consen   75 IKVWNYKTRRC----------------------------------------LFTLLGHLDYVRTVFFHHEY-PWILSASD  113 (1202)
T ss_pred             EEEEeccccee----------------------------------------hhhhccccceeEEeeccCCC-ceEEEccC
Confidence            99999986544                                        36788999999999999998 48999999


Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC------------------
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV------------------  361 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~------------------  361 (496)
                      |.+|+||+..+++  ++..+.+|...|.|..|+| ...+++++|.|.+||+||+.-+.....                  
T Consensus       114 DQTIrIWNwqsr~--~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL  190 (1202)
T KOG0292|consen  114 DQTIRIWNWQSRK--CIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL  190 (1202)
T ss_pred             CCeEEEEeccCCc--eEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence            9999999999988  7888899999999999999 899999999999999999875432110                  


Q ss_pred             -----CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997          362 -----GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  436 (496)
Q Consensus       362 -----~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  436 (496)
                           ...-+.+.||.-.|+-++|+|.-+ +++||++|+.|++|.++...             .=.+-+..||.+.|.++
T Consensus       191 fg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetK-------------aWEvDtcrgH~nnVssv  256 (1202)
T KOG0292|consen  191 FGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETK-------------AWEVDTCRGHYNNVSSV  256 (1202)
T ss_pred             cCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEecccc-------------ceeehhhhcccCCcceE
Confidence                 011245679999999999999988 77899999999999998731             12344568999999999


Q ss_pred             EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      -|+|... +++|.|       .|++|+|||+.      ....++++..-.++-+.+|.||
T Consensus       257 lfhp~q~-lIlSns-------EDksirVwDm~------kRt~v~tfrrendRFW~laahP  302 (1202)
T KOG0292|consen  257 LFHPHQD-LILSNS-------EDKSIRVWDMT------KRTSVQTFRRENDRFWILAAHP  302 (1202)
T ss_pred             EecCccc-eeEecC-------CCccEEEEecc------cccceeeeeccCCeEEEEEecC
Confidence            9999665 555544       55999999999      5677788876677888888776

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-33  Score=261.96  Aligned_cols=267  Identities=19%  Similarity=0.308  Sum_probs=230.0

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      ..|+..|.++.++| ....++++-.+|.|.|||.++.            ..+..+.-..- +|.+..|-+..+++++|+.
T Consensus        10 ~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetq------------tmVksfeV~~~-PvRa~kfiaRknWiv~GsD   75 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQ------------TMVKSFEVSEV-PVRAAKFIARKNWIVTGSD   75 (794)
T ss_pred             hccCCceeeeecCC-CCceEEEeeecCeeEEEecccc------------eeeeeeeeccc-chhhheeeeccceEEEecC
Confidence            35889999999999 5567778888999999999998            44555555444 7899999999999999999


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      |..|+|++.++.                                        +.+..|..|.+-|.+++.||.. .+++|
T Consensus        76 D~~IrVfnynt~----------------------------------------ekV~~FeAH~DyIR~iavHPt~-P~vLt  114 (794)
T KOG0276|consen   76 DMQIRVFNYNTG----------------------------------------EKVKTFEAHSDYIRSIAVHPTL-PYVLT  114 (794)
T ss_pred             CceEEEEecccc----------------------------------------eeeEEeeccccceeeeeecCCC-CeEEe
Confidence            999999999754                                        3358899999999999999999 58999


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL  376 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~  376 (496)
                      +|+|-+|++||....- .+..++.+|+..|.+++|+|.+.+.||+++.|++|++|.+.+      ..+..++++|...|+
T Consensus       115 sSDDm~iKlW~we~~w-a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs------~~~nfTl~gHekGVN  187 (794)
T KOG0276|consen  115 SSDDMTIKLWDWENEW-ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS------PHPNFTLEGHEKGVN  187 (794)
T ss_pred             cCCccEEEEeeccCce-eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC------CCCceeeeccccCcc
Confidence            9999999999997654 467889999999999999999999999999999999999998      788999999999999


Q ss_pred             EEEEcCCC--CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCC
Q 010997          377 CVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  454 (496)
Q Consensus       377 ~l~~sp~~--~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~  454 (496)
                      ++.+-+-|  ++| +||++|.+|+|||..+.               .++.++.||...|..+.|+|.-+.++        
T Consensus       188 ~Vdyy~~gdkpyl-IsgaDD~tiKvWDyQtk---------------~CV~TLeGHt~Nvs~v~fhp~lpiii--------  243 (794)
T KOG0276|consen  188 CVDYYTGGDKPYL-ISGADDLTIKVWDYQTK---------------SCVQTLEGHTNNVSFVFFHPELPIII--------  243 (794)
T ss_pred             eEEeccCCCcceE-EecCCCceEEEeecchH---------------HHHHHhhcccccceEEEecCCCcEEE--------
Confidence            99998754  665 59999999999999885               56777899999999999999877554        


Q ss_pred             CCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          455 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       455 sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                      |||.||+++||+-.      +-.+..+|.-.-++|++++-.
T Consensus       244 sgsEDGTvriWhs~------Ty~lE~tLn~gleRvW~I~~~  278 (794)
T KOG0276|consen  244 SGSEDGTVRIWNSK------TYKLEKTLNYGLERVWCIAAH  278 (794)
T ss_pred             EecCCccEEEecCc------ceehhhhhhcCCceEEEEeec
Confidence            56666999999988      566667777667778887643

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.1e-32  Score=242.52  Aligned_cols=280  Identities=21%  Similarity=0.414  Sum_probs=219.8

Q ss_pred             eEEEecCCCceeEEEecCCC--CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          133 KHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~--~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      +....+|.++|.++++.-.+  ...|++++.|.++++|.++.+....        +.....+||.. .|-+++..++|..
T Consensus       137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~--------~~~~~~~GHk~-~V~sVsv~~sgtr  207 (423)
T KOG0313|consen  137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV--------KALKVCRGHKR-SVDSVSVDSSGTR  207 (423)
T ss_pred             EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh--------hHHhHhccccc-ceeEEEecCCCCe
Confidence            45677999999988876523  3369999999999999998875432        33344559998 7999999999999


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      +++|+.|.+|.||+.............               .........--......|+..+.+|..+|.++.|++. 
T Consensus       208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s---------------~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~-  271 (423)
T KOG0313|consen  208 FCSGSWDTMLKIWSVETDEEDELESSS---------------NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA-  271 (423)
T ss_pred             EEeecccceeeecccCCCccccccccc---------------hhhhhhhhhhhcccccCceEEecccccceeeEEEcCC-
Confidence            999999999999994332111000000               0000000111122345677899999999999999983 


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                       ..+++++.|.+|+.||+.++.  ..... .....++|++.+| ...+||+|+.|..|++||.|+...   ....++|.+
T Consensus       272 -~v~yS~SwDHTIk~WDletg~--~~~~~-~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~g---s~v~~s~~g  343 (423)
T KOG0313|consen  272 -TVIYSVSWDHTIKVWDLETGG--LKSTL-TTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDG---SVVSQSLIG  343 (423)
T ss_pred             -CceEeecccceEEEEEeeccc--ceeee-ecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCC---ceeEEeeec
Confidence             589999999999999999988  34433 4567899999999 899999999999999999998642   345678899


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      |++.|.++.|+|...++|++++.|+++++||++..              ...++.+.+|.+.|.++.|+. +..++    
T Consensus       344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--------------k~plydI~~h~DKvl~vdW~~-~~~Iv----  404 (423)
T KOG0313|consen  344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--------------KAPLYDIAGHNDKVLSVDWNE-GGLIV----  404 (423)
T ss_pred             chhhhhheecCCCCceEEEEEecCCeEEEEEeccC--------------CCcceeeccCCceEEEEeccC-CceEE----
Confidence            99999999999999999999999999999999984              246888999999999999996 44444    


Q ss_pred             CCCCCCCCCCeEEEeecC
Q 010997          451 DDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~  468 (496)
                          |||.|++|+|+.-.
T Consensus       405 ----SGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  405 ----SGGADNKLRIFKGS  418 (423)
T ss_pred             ----eccCcceEEEeccc
Confidence                78888999999765

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-32  Score=259.75  Aligned_cols=265  Identities=17%  Similarity=0.328  Sum_probs=214.4

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      +++..+|...+++++|+| |+.++|||+.||.|+|||...+            -+..++..|+. .|+++.|+..|+.|+
T Consensus       343 VlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~Sg------------fC~vTFteHts-~Vt~v~f~~~g~~ll  408 (893)
T KOG0291|consen  343 VLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSG------------FCFVTFTEHTS-GVTAVQFTARGNVLL  408 (893)
T ss_pred             eeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCc------------eEEEEeccCCC-ceEEEEEEecCCEEE
Confidence            567789999999999999 9999999999999999999988            78889999998 699999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCC
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSA  291 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~  291 (496)
                      +.+-||+|+.||+......                                        ++|.. ..-...|++..|.| 
T Consensus       409 ssSLDGtVRAwDlkRYrNf----------------------------------------RTft~P~p~QfscvavD~sG-  447 (893)
T KOG0291|consen  409 SSSLDGTVRAWDLKRYRNF----------------------------------------RTFTSPEPIQFSCVAVDPSG-  447 (893)
T ss_pred             EeecCCeEEeeeeccccee----------------------------------------eeecCCCceeeeEEEEcCCC-
Confidence            9999999999999865432                                        22222 12345788888988 


Q ss_pred             ceEEEEcCCC-eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          292 QEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       292 ~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      .++++|+.|. .|.+|++.+++  .+-.+.+|+++|.+++|+| .+..||+||.|.+|++||+-..     ...+.++. 
T Consensus       448 elV~AG~~d~F~IfvWS~qTGq--llDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s-----~~~vEtl~-  518 (893)
T KOG0291|consen  448 ELVCAGAQDSFEIFVWSVQTGQ--LLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSS-----SGTVETLE-  518 (893)
T ss_pred             CEEEeeccceEEEEEEEeecCe--eeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeecc-----CceeeeEe-
Confidence            6777777765 59999999999  7888899999999999999 8999999999999999999862     13455554 


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCC-----CeeEEEecCCCCCcceEEecCCCCcE
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP-----AGLFFQHAGHRDKVVDFHWNASDPWT  445 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~V~~~~~~p~~~~l  445 (496)
                      +...+..++|+|+|.. +|++..||.|.+||.....+....+.+.+..+     ..............+.+++++||..+
T Consensus       519 i~sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~I  597 (893)
T KOG0291|consen  519 IRSDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCI  597 (893)
T ss_pred             eccceeEEEEcCCCCe-EEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEE
Confidence            6778999999999996 58899999999999987544433333222111     11222233345678999999999988


Q ss_pred             EEEecCCCCCCCCCCeEEEeecCCC
Q 010997          446 VVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       446 ~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      +        +||..+.|+||++.+.
T Consensus       598 l--------AgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  598 L--------AGGESNSICIYDVPEG  614 (893)
T ss_pred             E--------ecCCcccEEEEECchh
Confidence            8        7888899999999843

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.3e-32  Score=252.91  Aligned_cols=266  Identities=25%  Similarity=0.471  Sum_probs=224.4

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      .+|.+.|++++|+| ++++|++++.||.|++|++.+.            .....+.+|.. .+..+.|+|++++|++++.
T Consensus         6 ~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~   71 (289)
T cd00200           6 KGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETG------------ELLRTLKGHTG-PVRDVAASADGTYLASGSS   71 (289)
T ss_pred             cccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCC------------CcEEEEecCCc-ceeEEEECCCCCEEEEEcC
Confidence            47999999999999 7889999999999999999877            45567778877 5789999999999999999


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      ||.|++||+.+..                                        ....+..|...|.++.|++++ .++++
T Consensus        72 ~~~i~i~~~~~~~----------------------------------------~~~~~~~~~~~i~~~~~~~~~-~~~~~  110 (289)
T cd00200          72 DKTIRLWDLETGE----------------------------------------CVRTLTGHTSYVSSVAFSPDG-RILSS  110 (289)
T ss_pred             CCeEEEEEcCccc----------------------------------------ceEEEeccCCcEEEEEEcCCC-CEEEE
Confidence            9999999997531                                        225566788899999999986 78888


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL  376 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~  376 (496)
                      ++.|+.|.+||+++.+  ....+..|...+.+++|+| ++.++++++.||.|++||++.      +..+..+..|...|.
T Consensus       111 ~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i~  181 (289)
T cd00200         111 SSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRT------GKCVATLTGHTGEVN  181 (289)
T ss_pred             ecCCCeEEEEECCCcE--EEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccc------cccceeEecCccccc
Confidence            8889999999998766  4556667889999999999 788999888899999999997      677888889999999


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997          377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  456 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg  456 (496)
                      +++|+|++..+ ++++.|+.|++||+...               ..+..+.+|...|.+++|+|+ ..++++++      
T Consensus       182 ~~~~~~~~~~l-~~~~~~~~i~i~d~~~~---------------~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~------  238 (289)
T cd00200         182 SVAFSPDGEKL-LSSSSDGTIKLWDLSTG---------------KCLGTLRGHENGVNSVAFSPD-GYLLASGS------  238 (289)
T ss_pred             eEEECCCcCEE-EEecCCCcEEEEECCCC---------------ceecchhhcCCceEEEEEcCC-CcEEEEEc------
Confidence            99999999755 57777999999999873               334445578889999999998 45565444      


Q ss_pred             CCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          457 GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       457 g~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                       .||.|++|++.      .+..+..+..|...|.+++|+|
T Consensus       239 -~~~~i~i~~~~------~~~~~~~~~~~~~~i~~~~~~~  271 (289)
T cd00200         239 -EDGTIRVWDLR------TGECVQTLSGHTNSVTSLAWSP  271 (289)
T ss_pred             -CCCcEEEEEcC------CceeEEEccccCCcEEEEEECC
Confidence             35999999998      4666777778999999999986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.2e-33  Score=263.13  Aligned_cols=259  Identities=21%  Similarity=0.357  Sum_probs=217.0

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLS  213 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~s  213 (496)
                      -..+|+..|.++.... .+.+||||+.|.++++|.+++....        .-+.....||+. .|.+++++..+ .+|++
T Consensus       360 ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~--------~~~~a~~~gH~~-svgava~~~~~asffvs  429 (775)
T KOG0319|consen  360 IIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSK--------SLCVAQANGHTN-SVGAVAGSKLGASFFVS  429 (775)
T ss_pred             EEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecCCcch--------hhhhhhhccccc-ccceeeecccCccEEEE
Confidence            4569999999999545 5689999999999999999554222        245566789998 68999997654 48999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      +|.|+++++|++........  +                             ...........|...|++++.+|++ .+
T Consensus       430 vS~D~tlK~W~l~~s~~~~~--~-----------------------------~~~~~~~t~~aHdKdIN~Vaia~nd-kL  477 (775)
T KOG0319|consen  430 VSQDCTLKLWDLPKSKETAF--P-----------------------------IVLTCRYTERAHDKDINCVAIAPND-KL  477 (775)
T ss_pred             ecCCceEEEecCCCcccccc--c-----------------------------ceehhhHHHHhhcccccceEecCCC-ce
Confidence            99999999999975211100  0                             0111112345799999999999998 89


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      ++|||.|.+.+||++....  ...++.+|...|.|+.|+| ..+++||+|.|++|+||.+.+      ..++.+|.||..
T Consensus       478 iAT~SqDktaKiW~le~~~--l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~------fSClkT~eGH~~  548 (775)
T KOG0319|consen  478 IATGSQDKTAKIWDLEQLR--LLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSIST------FSCLKTFEGHTS  548 (775)
T ss_pred             EEecccccceeeecccCce--EEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEecc------ceeeeeecCccc
Confidence            9999999999999999655  7888999999999999999 899999999999999999999      889999999999


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  453 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~  453 (496)
                      .|..++|-.++..| +|++.||.|++|++.+.               .+...+.+|.+.|++++-+|....++       
T Consensus       549 aVlra~F~~~~~ql-iS~~adGliKlWnikt~---------------eC~~tlD~H~DrvWaL~~~~~~~~~~-------  605 (775)
T KOG0319|consen  549 AVLRASFIRNGKQL-ISAGADGLIKLWNIKTN---------------ECEMTLDAHNDRVWALSVSPLLDMFV-------  605 (775)
T ss_pred             eeEeeeeeeCCcEE-EeccCCCcEEEEeccch---------------hhhhhhhhccceeEEEeecCccceeE-------
Confidence            99999999999965 59999999999999985               56777899999999999999887544       


Q ss_pred             CCCCCCCeEEEeecC
Q 010997          454 DSTGGGGTLQIWRMS  468 (496)
Q Consensus       454 ~sgg~Dg~i~iw~~~  468 (496)
                       |||.||.|.+|.=.
T Consensus       606 -tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  606 -TGGGDGRIIFWKDV  619 (775)
T ss_pred             -ecCCCeEEEEeecC
Confidence             78888999999654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2e-33  Score=245.94  Aligned_cols=309  Identities=17%  Similarity=0.266  Sum_probs=245.6

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      ...+..|++.|.+++.+| +.+++|||+.|....||++.++            .....+.+|.+ .|+++.|+.+|.+||
T Consensus        57 ~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~g------------e~~~eltgHKD-SVt~~~FshdgtlLA  122 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTG------------EFAGELTGHKD-SVTCCSFSHDGTLLA  122 (399)
T ss_pred             eeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCC------------cceeEecCCCC-ceEEEEEccCceEEE
Confidence            456678999999999999 8999999999999999999998            55678999999 689999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCc--cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDP--ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      ||+.+|.|+||...++........  .......-.........+..++.+..|..++....+.+.+|..++++=.|.|+|
T Consensus       123 TGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG  202 (399)
T KOG0296|consen  123 TGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG  202 (399)
T ss_pred             ecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC
Confidence            999999999999998765444321  000000000011122334567788888888888889999999999999999998


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-  369 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-  369 (496)
                       ..++++..||+|++||..++. |.............++.++. .+..+..|+.++.+++-...+      ++.+.... 
T Consensus       203 -Kr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~s------gKVv~~~n~  273 (399)
T KOG0296|consen  203 -KRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGS------GKVVNCNNG  273 (399)
T ss_pred             -ceEEEEecCceEEEEecCCCc-eeEEecccccCcCCcccccc-ccceeEeccCCccEEEEcccc------ceEEEecCC
Confidence             789999999999999999997 23333223345678899998 899999999999999988776      55554444 


Q ss_pred             -------cCCCCEEEEEEcCC---CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEec
Q 010997          370 -------GHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  439 (496)
Q Consensus       370 -------~h~~~i~~l~~sp~---~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~  439 (496)
                             .+...+.+|.+.|.   -+ |+|+|+.||+|.|||+...                .+.....|..+|+.+.|-
T Consensus       274 ~~~~l~~~~e~~~esve~~~~ss~lp-L~A~G~vdG~i~iyD~a~~----------------~~R~~c~he~~V~~l~w~  336 (399)
T KOG0296|consen  274 TVPELKPSQEELDESVESIPSSSKLP-LAACGSVDGTIAIYDLAAS----------------TLRHICEHEDGVTKLKWL  336 (399)
T ss_pred             CCccccccchhhhhhhhhcccccccc-hhhcccccceEEEEecccc----------------hhheeccCCCceEEEEEc
Confidence                   35555566666554   44 7899999999999999883                233345688899999999


Q ss_pred             CCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          440 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       440 p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      + ..+++        +++.||.|+.||.+      +|+++.++.||+.+|.+++.+|
T Consensus       337 ~-t~~l~--------t~c~~g~v~~wDaR------tG~l~~~y~GH~~~Il~f~ls~  378 (399)
T KOG0296|consen  337 N-TDYLL--------TACANGKVRQWDAR------TGQLKFTYTGHQMGILDFALSP  378 (399)
T ss_pred             C-cchhe--------eeccCceEEeeecc------ccceEEEEecCchheeEEEEcC
Confidence            8 67777        45556999999999      8999999999999999999887

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.1e-33  Score=244.94  Aligned_cols=229  Identities=21%  Similarity=0.413  Sum_probs=205.1

Q ss_pred             CCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCC
Q 010997          184 NSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA  263 (496)
Q Consensus       184 ~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (496)
                      ..+....+.||.+ .|.|+++.|.+.+|+||+.|++|+|||+.+++.                                 
T Consensus       140 pwKl~rVi~gHlg-WVr~vavdP~n~wf~tgs~DrtikIwDlatg~L---------------------------------  185 (460)
T KOG0285|consen  140 PWKLYRVISGHLG-WVRSVAVDPGNEWFATGSADRTIKIWDLATGQL---------------------------------  185 (460)
T ss_pred             cceehhhhhhccc-eEEEEeeCCCceeEEecCCCceeEEEEcccCeE---------------------------------
Confidence            3455667899998 799999999999999999999999999987654                                 


Q ss_pred             CCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc
Q 010997          264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  343 (496)
Q Consensus       264 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs  343 (496)
                             ..++.+|...|..+++++.. .++++++.|+.|+.||+...+  .++.+.+|-+.|.|++.+| .-..|++|+
T Consensus       186 -------kltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nk--vIR~YhGHlS~V~~L~lhP-Tldvl~t~g  254 (460)
T KOG0285|consen  186 -------KLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNK--VIRHYHGHLSGVYCLDLHP-TLDVLVTGG  254 (460)
T ss_pred             -------EEeecchhheeeeeeecccC-ceEEEecCCCeeEEEechhhh--hHHHhccccceeEEEeccc-cceeEEecC
Confidence                   36788999999999999999 589999999999999999888  7888889999999999999 899999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997          344 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  423 (496)
Q Consensus       344 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  423 (496)
                      .|.++++||+|+      ...++.+.+|..+|.++.+.|..+.+ ++|+.|++|++||++.+               ..+
T Consensus       255 rDst~RvWDiRt------r~~V~~l~GH~~~V~~V~~~~~dpqv-it~S~D~tvrlWDl~ag---------------kt~  312 (460)
T KOG0285|consen  255 RDSTIRVWDIRT------RASVHVLSGHTNPVASVMCQPTDPQV-ITGSHDSTVRLWDLRAG---------------KTM  312 (460)
T ss_pred             CcceEEEeeecc------cceEEEecCCCCcceeEEeecCCCce-EEecCCceEEEeeeccC---------------cee
Confidence            999999999999      78999999999999999999988875 59999999999999985               456


Q ss_pred             EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997          424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  494 (496)
Q Consensus       424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~  494 (496)
                      ..+..|...|.+++.+|. .+++||++.|        .|+-|++.      .++.++.+.+|+..|++++.
T Consensus       313 ~tlt~hkksvral~lhP~-e~~fASas~d--------nik~w~~p------~g~f~~nlsgh~~iintl~~  368 (460)
T KOG0285|consen  313 ITLTHHKKSVRALCLHPK-ENLFASASPD--------NIKQWKLP------EGEFLQNLSGHNAIINTLSV  368 (460)
T ss_pred             EeeecccceeeEEecCCc-hhhhhccCCc--------cceeccCC------ccchhhccccccceeeeeee
Confidence            677889999999999995 5677766654        69999999      78999999999999988864

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=9e-32  Score=229.84  Aligned_cols=269  Identities=20%  Similarity=0.355  Sum_probs=219.3

Q ss_pred             cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 010997           93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA  172 (496)
Q Consensus        93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~  172 (496)
                      ++++.+..|++|++.-               +...     .-...+|.++|..+.|++ ++..|++++.|.+|+.||.++
T Consensus        63 aSgG~Dr~I~LWnv~g---------------dceN-----~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   63 ASGGSDRAIVLWNVYG---------------DCEN-----FWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             eecCCcceEEEEeccc---------------cccc-----eeeeccccceeEeeeecc-CCCEEEEecCCceEEEEeccc
Confidence            4678899999998632               1111     123339999999999999 889999999999999999999


Q ss_pred             CCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceecc
Q 010997          173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ  251 (496)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (496)
                      +            +....+++|.+ .|+++.-+.-|. .+.||+.||++++||+++....                    
T Consensus       122 G------------~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~--------------------  168 (338)
T KOG0265|consen  122 G------------KRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI--------------------  168 (338)
T ss_pred             c------------eeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccchh--------------------
Confidence            9            67788999998 688888554455 5668999999999999864332                    


Q ss_pred             CCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEe
Q 010997          252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW  331 (496)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~  331 (496)
                                          +++ .....++++.|...+ ..+++|+-|+.|++||+|...  ...++.+|.+.|+.+..
T Consensus       169 --------------------~t~-~~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d--~~~~lsGh~DtIt~lsl  224 (338)
T KOG0265|consen  169 --------------------KTF-ENKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKND--GLYTLSGHADTITGLSL  224 (338)
T ss_pred             --------------------hcc-ccceeEEEEEecccc-cceeeccccCceeeeccccCc--ceEEeecccCceeeEEe
Confidence                                111 224578999999888 679999999999999999988  78888999999999999


Q ss_pred             cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC----CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997          332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  407 (496)
Q Consensus       332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~----~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~  407 (496)
                      +| ++.++.+-+.|.++++||+|-..+.  .+++..+.+|..    ....++|+|++.. +.+|+.|+.+++||....  
T Consensus       225 s~-~gs~llsnsMd~tvrvwd~rp~~p~--~R~v~if~g~~hnfeknlL~cswsp~~~~-i~ags~dr~vyvwd~~~r--  298 (338)
T KOG0265|consen  225 SR-YGSFLLSNSMDNTVRVWDVRPFAPS--QRCVKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSADRFVYVWDTTSR--  298 (338)
T ss_pred             cc-CCCccccccccceEEEEEecccCCC--CceEEEeecchhhhhhhcceeeccCCCCc-cccccccceEEEeecccc--
Confidence            99 9999999999999999999975432  345777776643    4568899999996 578999999999998774  


Q ss_pred             ccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997          408 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~  466 (496)
                                   .+++.+.||.+.|+.++|+|..+.++        +++.|.+|.+=.
T Consensus       299 -------------~~lyklpGh~gsvn~~~Fhp~e~iil--------s~~sdk~i~lge  336 (338)
T KOG0265|consen  299 -------------RILYKLPGHYGSVNEVDFHPTEPIIL--------SCSSDKTIYLGE  336 (338)
T ss_pred             -------------cEEEEcCCcceeEEEeeecCCCcEEE--------EeccCceeEeec
Confidence                         68889999999999999999887655        455568887643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.9e-31  Score=280.25  Aligned_cols=287  Identities=19%  Similarity=0.233  Sum_probs=216.1

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEe
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG  214 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg  214 (496)
                      ...|.+.|++++|+| ++++||+|+.|+.|+|||+........    ....+...+.++.  .+.+++|++. +.+|++|
T Consensus       479 ~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~----~~~~~~~~~~~~~--~v~~l~~~~~~~~~las~  551 (793)
T PLN00181        479 LLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGR----DIHYPVVELASRS--KLSGICWNSYIKSQVASS  551 (793)
T ss_pred             ccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCccccccc----ccccceEEecccC--ceeeEEeccCCCCEEEEE
Confidence            345999999999999 889999999999999999865311100    0112334444443  5889999885 6799999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.||+|++||+.++.                                        .+..+.+|.+.|++++|+|.++.+|
T Consensus       552 ~~Dg~v~lWd~~~~~----------------------------------------~~~~~~~H~~~V~~l~~~p~~~~~L  591 (793)
T PLN00181        552 NFEGVVQVWDVARSQ----------------------------------------LVTEMKEHEKRVWSIDYSSADPTLL  591 (793)
T ss_pred             eCCCeEEEEECCCCe----------------------------------------EEEEecCCCCCEEEEEEcCCCCCEE
Confidence            999999999987532                                        2356778999999999998544799


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      ++|+.||+|++||++++.  ....+. +...|.++.|++.++.+|++|+.||.|++||+++.     ..++..+.+|...
T Consensus       592 ~Sgs~Dg~v~iWd~~~~~--~~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~  663 (793)
T PLN00181        592 ASGSDDGSVKLWSINQGV--SIGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKT  663 (793)
T ss_pred             EEEcCCCEEEEEECCCCc--EEEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCC
Confidence            999999999999999876  444554 34689999997647999999999999999999872     1357788899999


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  454 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~  454 (496)
                      |.++.|. ++. .|++++.|+.|+|||+......         .....+..+.+|...+..++|+|++.+ ++       
T Consensus       664 V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~---------~~~~~l~~~~gh~~~i~~v~~s~~~~~-la-------  724 (793)
T PLN00181        664 VSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISG---------INETPLHSFMGHTNVKNFVGLSVSDGY-IA-------  724 (793)
T ss_pred             EEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccc---------cCCcceEEEcCCCCCeeEEEEcCCCCE-EE-------
Confidence            9999997 455 4679999999999999753110         112356678899999999999998875 45       


Q ss_pred             CCCCCCeEEEeecCCCCcC-----CchHHH--HHHHhccceEEEeccCC
Q 010997          455 STGGGGTLQIWRMSDLIYR-----PQDEVL--AELEKFKAHVISCTSKP  496 (496)
Q Consensus       455 sgg~Dg~i~iw~~~~~~~~-----~~~~~~--~~l~~h~~~v~~~~~sP  496 (496)
                      +|+.||.|+||+.......     .....+  ..+..|...|.+++|+|
T Consensus       725 sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        725 TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG  773 (793)
T ss_pred             EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence            4555699999997632100     000011  12345667899999987

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.9e-32  Score=243.16  Aligned_cols=278  Identities=20%  Similarity=0.314  Sum_probs=221.3

Q ss_pred             cccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC
Q 010997          129 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE  208 (496)
Q Consensus       129 ~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~  208 (496)
                      |......+..|+++|.-+.|++ +|++||+++.|.+..||++....         ..+...++.||.. +|..+.|+||.
T Consensus       213 p~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~---------~~kl~~tlvgh~~-~V~yi~wSPDd  281 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDV---------HFKLKKTLVGHSQ-PVSYIMWSPDD  281 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCc---------ceeeeeeeecccC-ceEEEEECCCC
Confidence            3333344557999999999999 99999999999999999987662         1356788999998 78999999999


Q ss_pred             CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      ++|++|+.|..+.+||+.++.......                                       .+|...+.+++|.|
T Consensus       282 ryLlaCg~~e~~~lwDv~tgd~~~~y~---------------------------------------~~~~~S~~sc~W~p  322 (519)
T KOG0293|consen  282 RYLLACGFDEVLSLWDVDTGDLRHLYP---------------------------------------SGLGFSVSSCAWCP  322 (519)
T ss_pred             CeEEecCchHheeeccCCcchhhhhcc---------------------------------------cCcCCCcceeEEcc
Confidence            999999999999999998775432111                                       13457889999999


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      |+ ..|++|+.|+.|..||+.....  -.-.......|.+++..+ +|.++++.+.|..|++++...      ..... +
T Consensus       323 Dg-~~~V~Gs~dr~i~~wdlDgn~~--~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~------~~dr~-l  391 (519)
T KOG0293|consen  323 DG-FRFVTGSPDRTIIMWDLDGNIL--GNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREA------RVDRG-L  391 (519)
T ss_pred             CC-ceeEecCCCCcEEEecCCcchh--hcccccccceeEEEEEcC-CCcEEEEEecccceeeechhh------hhhhc-c
Confidence            99 7899999999999999976541  111112335689999999 999999999999999999887      23332 3


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC--CcceEEecCCCCcEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTV  446 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~~~~~p~~~~l~  446 (496)
                      .....+|++++.|.++.++| +.-.+..|++||+...               .++....||..  -|..-+|-..+..++
T Consensus       392 ise~~~its~~iS~d~k~~L-vnL~~qei~LWDl~e~---------------~lv~kY~Ghkq~~fiIrSCFgg~~~~fi  455 (519)
T KOG0293|consen  392 ISEEQPITSFSISKDGKLAL-VNLQDQEIHLWDLEEN---------------KLVRKYFGHKQGHFIIRSCFGGGNDKFI  455 (519)
T ss_pred             ccccCceeEEEEcCCCcEEE-EEcccCeeEEeecchh---------------hHHHHhhcccccceEEEeccCCCCcceE
Confidence            33567899999999999665 6667899999999864               44555667765  344456665555678


Q ss_pred             EEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          447 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +|+|+       |+.|+||+..      ++.++.+|.||...|++|+|+|
T Consensus       456 aSGSE-------D~kvyIWhr~------sgkll~~LsGHs~~vNcVswNP  492 (519)
T KOG0293|consen  456 ASGSE-------DSKVYIWHRI------SGKLLAVLSGHSKTVNCVSWNP  492 (519)
T ss_pred             EecCC-------CceEEEEEcc------CCceeEeecCCcceeeEEecCC
Confidence            75555       4999999999      8999999999999999999998

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=6.8e-32  Score=237.44  Aligned_cols=275  Identities=20%  Similarity=0.382  Sum_probs=228.3

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC---
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP---  209 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~---  209 (496)
                      ...-+.|.+.|.++...   ++.|.+|+.||.++|||...             +....+.||.+ +|.+++|.-.+.   
T Consensus        98 pl~~~~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~G-------------k~~~~~~Ght~-~ik~v~~v~~n~~~~  160 (423)
T KOG0313|consen   98 PLQCFLHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKG-------------KSIKTIVGHTG-PIKSVAWVIKNSSSC  160 (423)
T ss_pred             ccccccchhhhhhhccc---CceEEEeecCCeeEEEecCC-------------ceEEEEecCCc-ceeeeEEEecCCccc
Confidence            34557899999999875   57899999999999999865             45678899998 688888865443   


Q ss_pred             ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      .|++++.|.++++|-++.+...                                    .+.+....||...|.++...++
T Consensus       161 ~fvsas~Dqtl~Lw~~~~~~~~------------------------------------~~~~~~~~GHk~~V~sVsv~~s  204 (423)
T KOG0313|consen  161 LFVSASMDQTLRLWKWNVGENK------------------------------------VKALKVCRGHKRSVDSVSVDSS  204 (423)
T ss_pred             eEEEecCCceEEEEEecCchhh------------------------------------hhHHhHhcccccceeEEEecCC
Confidence            5999999999999998765331                                    1222444599999999999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCC-----------------------CccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997          290 SAQEFCSVGDDSCLILWDARVG-----------------------TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  346 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg  346 (496)
                      + ..|++|+.|.+|.||+..+.                       ....+.++.+|..+|.++.|++  ...+.+++.|.
T Consensus       205 g-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDH  281 (423)
T KOG0313|consen  205 G-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDH  281 (423)
T ss_pred             C-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceEeecccc
Confidence            9 89999999999999993211                       0123556789999999999997  77899999999


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  426 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  426 (496)
                      +|+.||+.+      +....++.+ ...++++..+|... |||+|+.|..|++||.+.+            ......+++
T Consensus       282 TIk~WDlet------g~~~~~~~~-~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~------------~gs~v~~s~  341 (423)
T KOG0313|consen  282 TIKVWDLET------GGLKSTLTT-NKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTG------------DGSVVSQSL  341 (423)
T ss_pred             eEEEEEeec------ccceeeeec-CcceeEeecccccc-eeeecCCCCceeecCCCCC------------CCceeEEee
Confidence            999999999      777777764 66789999999877 7889999999999999985            233567788


Q ss_pred             cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                      .||.+.|.++.|+|...++++|+|.|       |++++||++.     ...++..+.+|...|.+++|.
T Consensus       342 ~gH~nwVssvkwsp~~~~~~~S~S~D-------~t~klWDvRS-----~k~plydI~~h~DKvl~vdW~  398 (423)
T KOG0313|consen  342 IGHKNWVSSVKWSPTNEFQLVSGSYD-------NTVKLWDVRS-----TKAPLYDIAGHNDKVLSVDWN  398 (423)
T ss_pred             ecchhhhhheecCCCCceEEEEEecC-------CeEEEEEecc-----CCCcceeeccCCceEEEEecc
Confidence            99999999999999999999977766       9999999993     345899999999999999985

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-31  Score=236.52  Aligned_cols=250  Identities=22%  Similarity=0.383  Sum_probs=203.7

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .....+|..+|..+.|+| |.++|++|+.|-.+.+||+.++...            ..+..-.+..+.+++|.|||..++
T Consensus       262 ~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~------------~~y~~~~~~S~~sc~W~pDg~~~V  328 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLR------------HLYPSGLGFSVSSCAWCPDGFRFV  328 (519)
T ss_pred             eeeeecccCceEEEEECC-CCCeEEecCchHheeeccCCcchhh------------hhcccCcCCCcceeEEccCCceeE
Confidence            346679999999999999 7778888888889999999998432            222222233688999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCC
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSA  291 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~  291 (496)
                      +|+.|++|..||++....                                         ....+ ....|.+++..+|| 
T Consensus       329 ~Gs~dr~i~~wdlDgn~~-----------------------------------------~~W~gvr~~~v~dlait~Dg-  366 (519)
T KOG0293|consen  329 TGSPDRTIIMWDLDGNIL-----------------------------------------GNWEGVRDPKVHDLAITYDG-  366 (519)
T ss_pred             ecCCCCcEEEecCCcchh-----------------------------------------hcccccccceeEEEEEcCCC-
Confidence            999999999999975321                                         11111 12468999999999 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      ..+++.+.|..|++|+..+...  .. ...-..+|++++.|. ++.++++.=.+..|++||+..      ...+..+.||
T Consensus       367 k~vl~v~~d~~i~l~~~e~~~d--r~-lise~~~its~~iS~-d~k~~LvnL~~qei~LWDl~e------~~lv~kY~Gh  436 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREARVD--RG-LISEEQPITSFSISK-DGKLALVNLQDQEIHLWDLEE------NKLVRKYFGH  436 (519)
T ss_pred             cEEEEEecccceeeechhhhhh--hc-cccccCceeEEEEcC-CCcEEEEEcccCeeEEeecch------hhHHHHhhcc
Confidence            6777788999999999887652  21 223457899999999 899999999999999999997      7888999998


Q ss_pred             CCC--EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          372 SAA--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       372 ~~~--i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      +..  |..-+|--....++|+|++|+.|+||+..++               .++..+.||...|++++|+|.++.++||+
T Consensus       437 kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---------------kll~~LsGHs~~vNcVswNP~~p~m~ASa  501 (519)
T KOG0293|consen  437 KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---------------KLLAVLSGHSKTVNCVSWNPADPEMFASA  501 (519)
T ss_pred             cccceEEEeccCCCCcceEEecCCCceEEEEEccCC---------------ceeEeecCCcceeeEEecCCCCHHHhhcc
Confidence            764  5566777655557899999999999999885               67888999999999999999999999977


Q ss_pred             cCCCCCCCCCCeEEEeecCC
Q 010997          450 SDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      |+|       |+|+||.+.+
T Consensus       502 sDD-------gtIRIWg~~~  514 (519)
T KOG0293|consen  502 SDD-------GTIRIWGPSD  514 (519)
T ss_pred             CCC-------CeEEEecCCc
Confidence            766       9999999884

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.6e-32  Score=246.31  Aligned_cols=269  Identities=22%  Similarity=0.398  Sum_probs=220.7

Q ss_pred             CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997           94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ  173 (496)
Q Consensus        94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~  173 (496)
                      +++.+..++||++-               +.     ...+....+|..+|..++|++ ++..+.+++.|+.|++||++++
T Consensus       232 S~gmD~~vklW~vy---------------~~-----~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG  290 (503)
T KOG0282|consen  232 SGGMDGLVKLWNVY---------------DD-----RRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETG  290 (503)
T ss_pred             ecCCCceEEEEEEe---------------cC-----cceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccc
Confidence            56788999999863               21     113445679999999999999 8888999999999999999999


Q ss_pred             CCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccC
Q 010997          174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS  252 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (496)
                                  +.  ....|.+..++|+.|+|++ +.+++|+.|+.|+.||++++..                      
T Consensus       291 ------------~~--~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv----------------------  334 (503)
T KOG0282|consen  291 ------------QV--LSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV----------------------  334 (503)
T ss_pred             ------------eE--EEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH----------------------
Confidence                        33  3445666678999999998 7899999999999999986543                      


Q ss_pred             CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec
Q 010997          253 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  332 (496)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s  332 (496)
                                        ++.+..|.+.|.++.|-+++ ..|++.++|++++||+.+.+- +.......+.....|+..+
T Consensus       335 ------------------vqeYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~  394 (503)
T KOG0282|consen  335 ------------------VQEYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLH  394 (503)
T ss_pred             ------------------HHHHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecC
Confidence                              36677899999999999999 789999999999999998876 2233334455677899999


Q ss_pred             CCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC--CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997          333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  410 (496)
Q Consensus       333 p~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~--~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~  410 (496)
                      | ++.+++.-+.|..|.+|.+...-.   ...-..|++|.  +.-..+.|||||++ |++|+.||.+.+||.++.     
T Consensus       395 P-~~~~~~aQs~dN~i~ifs~~~~~r---~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwkt~-----  464 (503)
T KOG0282|consen  395 P-NGKWFAAQSMDNYIAIFSTVPPFR---LNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWKTT-----  464 (503)
T ss_pred             C-CCCeehhhccCceEEEEecccccc---cCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeechhh-----
Confidence            9 999999999999999999775322   23345577775  45678999999996 579999999999999885     


Q ss_pred             CCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997          411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~  466 (496)
                                .++..+..|..++..+.|+|..+..+|       |+|+||.|++|+
T Consensus       465 ----------kl~~~lkah~~~ci~v~wHP~e~Skva-------t~~w~G~Ikiwd  503 (503)
T KOG0282|consen  465 ----------KLVSKLKAHDQPCIGVDWHPVEPSKVA-------TCGWDGLIKIWD  503 (503)
T ss_pred             ----------hhhhccccCCcceEEEEecCCCcceeE-------ecccCceeEecC
Confidence                      566778899999999999999888887       566779999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2e-31  Score=262.08  Aligned_cols=249  Identities=23%  Similarity=0.478  Sum_probs=209.7

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      .+|...|++++|+| ++.++++++.|++|+|||+...           ...+.++.+|.. .|++++|+|+++++++|+.
T Consensus       200 ~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~-----------~~~~~~l~gH~~-~v~~~~f~p~g~~i~Sgs~  266 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDD-----------GRNLKTLKGHST-YVTSVAFSPDGNLLVSGSD  266 (456)
T ss_pred             cccccceeeeEECC-CCcEEEEecCCceEEEeeccCC-----------CeEEEEecCCCC-ceEEEEecCCCCEEEEecC
Confidence            68999999999999 8889999999999999999332           166789999998 6899999999999999999


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      |++|+|||++++.                                        +...+.+|.+.|++++|++++ .+|++
T Consensus       267 D~tvriWd~~~~~----------------------------------------~~~~l~~hs~~is~~~f~~d~-~~l~s  305 (456)
T KOG0266|consen  267 DGTVRIWDVRTGE----------------------------------------CVRKLKGHSDGISGLAFSPDG-NLLVS  305 (456)
T ss_pred             CCcEEEEeccCCe----------------------------------------EEEeeeccCCceEEEEECCCC-CEEEE
Confidence            9999999998643                                        347899999999999999999 79999


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCC--CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      ++.|+.|++||+.++...+...+..+..  .+++++|+| ++.++++++.|+.+++||++.      +..+..+.+|...
T Consensus       306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~------~~~~~~~~~~~~~  378 (456)
T KOG0266|consen  306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRS------GKSVGTYTGHSNL  378 (456)
T ss_pred             cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccC------CcceeeecccCCc
Confidence            9999999999999887321234444444  599999999 999999999999999999998      7888888888875


Q ss_pred             ---EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC-CCCcceEEecCCCCcEEEEec
Q 010997          375 ---VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       375 ---i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~p~~~~l~~s~s  450 (496)
                         +.+...++.+.+ +.+|+.|+.|++||+...               ..+..+.+| ...|..++|+|... ++++++
T Consensus       379 ~~~~~~~~~~~~~~~-i~sg~~d~~v~~~~~~s~---------------~~~~~l~~h~~~~~~~~~~~~~~~-~~~s~s  441 (456)
T KOG0266|consen  379 VRCIFSPTLSTGGKL-IYSGSEDGSVYVWDSSSG---------------GILQRLEGHSKAAVSDLSSHPTEN-LIASSS  441 (456)
T ss_pred             ceeEecccccCCCCe-EEEEeCCceEEEEeCCcc---------------chhhhhcCCCCCceeccccCCCcC-eeeecC
Confidence               445556777885 569999999999999874               345557788 88999999999654 565543


Q ss_pred             CCCCCCCCCCeEEEeecC
Q 010997          451 DDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~  468 (496)
                           ...|+.+++|...
T Consensus       442 -----~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  442 -----FEGDGLIRLWKYD  454 (456)
T ss_pred             -----cCCCceEEEecCC
Confidence                 2257999999875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.2e-29  Score=236.25  Aligned_cols=279  Identities=24%  Similarity=0.453  Sum_probs=224.9

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      |..++.|.|.        ...++.+.     .++.+.+|+.....                     .......|...+..
T Consensus        11 ~i~~~~~~~~--------~~~l~~~~-----~~g~i~i~~~~~~~---------------------~~~~~~~~~~~i~~   56 (289)
T cd00200          11 GVTCVAFSPD--------GKLLATGS-----GDGTIKVWDLETGE---------------------LLRTLKGHTGPVRD   56 (289)
T ss_pred             CEEEEEEcCC--------CCEEEEee-----cCcEEEEEEeeCCC---------------------cEEEEecCCcceeE
Confidence            6667888775        13444443     46788888764211                     22344578889999


Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI  225 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~  225 (496)
                      +.|+| ++++|++++.+|.|++||+...            +....+..|.. .+.++.|++++.++++++.||.|.+||+
T Consensus        57 ~~~~~-~~~~l~~~~~~~~i~i~~~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          57 VAASA-DGTYLASGSSDKTIRLWDLETG------------ECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             EEECC-CCCEEEEEcCCCeEEEEEcCcc------------cceEEEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            99999 6789999999999999999876            45566778876 6899999999888888888999999999


Q ss_pred             CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997          226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL  305 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  305 (496)
                      .+..                                        ....+..|...|.+++|+|++ .++++++.|+.|++
T Consensus       123 ~~~~----------------------------------------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i  161 (289)
T cd00200         123 ETGK----------------------------------------CLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKL  161 (289)
T ss_pred             CCcE----------------------------------------EEEEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEE
Confidence            7432                                        124555788899999999986 68888888999999


Q ss_pred             EEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCC
Q 010997          306 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS  385 (496)
Q Consensus       306 wd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~  385 (496)
                      ||++..+  ....+..|...+.+++|+| ++..+++++.||.|++||++.      +..+..+..|...|.+++|+|++.
T Consensus       162 ~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~  232 (289)
T cd00200         162 WDLRTGK--CVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLST------GKCLGTLRGHENGVNSVAFSPDGY  232 (289)
T ss_pred             EEccccc--cceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCC------CceecchhhcCCceEEEEEcCCCc
Confidence            9998776  4556668888999999999 888899999999999999998      677888878999999999999965


Q ss_pred             CEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEe
Q 010997          386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  465 (496)
Q Consensus       386 ~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw  465 (496)
                       ++++++.||.|++||+...               ..+..+.+|...|.+++|+|++..++        +++.||.|++|
T Consensus       233 -~~~~~~~~~~i~i~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~--------~~~~d~~i~iw  288 (289)
T cd00200         233 -LLASGSEDGTIRVWDLRTG---------------ECVQTLSGHTNSVTSLAWSPDGKRLA--------SGSADGTIRIW  288 (289)
T ss_pred             -EEEEEcCCCcEEEEEcCCc---------------eeEEEccccCCcEEEEEECCCCCEEE--------EecCCCeEEec
Confidence             6777777999999999864               34555668888999999999877655        55566999999


Q ss_pred             e
Q 010997          466 R  466 (496)
Q Consensus       466 ~  466 (496)
                      +
T Consensus       289 ~  289 (289)
T cd00200         289 D  289 (289)
T ss_pred             C
Confidence            6

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.7e-30  Score=254.35  Aligned_cols=286  Identities=18%  Similarity=0.317  Sum_probs=203.6

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCcccc--CCCCCCCCceEEecCCCCcceeeeecC-CCCceEEec
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAV--LGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGG  215 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~sg~  215 (496)
                      |-..|+...+++ ++..+++++.+..+..|+...+......  .+... .....+.+|.+ .|++++|+| ++++|++|+
T Consensus        19 ~~~~i~~~~~~~-d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~-~~~~~l~GH~~-~V~~v~fsP~d~~~LaSgS   95 (493)
T PTZ00421         19 HFLNVTPSTALW-DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA-SNPPILLGQEG-PIIDVAFNPFDPQKLFTAS   95 (493)
T ss_pred             ceeccccccccC-CCCCcEeECCceEEEEEecCCceEEeeccccccCC-CCCceEeCCCC-CEEEEEEcCCCCCEEEEEe
Confidence            444566666666 5445667777777778876544211100  01000 11235789988 799999999 788999999


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      .|++|++||+.+.....                                 ....++..+.+|...|.+++|+|.+.++|+
T Consensus        96 ~DgtIkIWdi~~~~~~~---------------------------------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLa  142 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQ---------------------------------NISDPIVHLQGHTKKVGIVSFHPSAMNVLA  142 (493)
T ss_pred             CCCEEEEEecCCCcccc---------------------------------ccCcceEEecCCCCcEEEEEeCcCCCCEEE
Confidence            99999999997532100                                 012345678899999999999998767999


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC-
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA-  374 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-  374 (496)
                      +++.|++|+|||++++.  ....+..|...|.+++|+| ++.+|++|+.|+.|+|||+++      +..+.++.+|.+. 
T Consensus       143 Sgs~DgtVrIWDl~tg~--~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs------g~~v~tl~~H~~~~  213 (493)
T PTZ00421        143 SAGADMVVNVWDVERGK--AVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD------GTIVSSVEAHASAK  213 (493)
T ss_pred             EEeCCCEEEEEECCCCe--EEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCC------CcEEEEEecCCCCc
Confidence            99999999999999877  5666778999999999999 899999999999999999998      7788888888765 


Q ss_pred             EEEEEEcCCCCCEEEEE---eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec-CCCCCcceEEecCCCCcEEEEec
Q 010997          375 VLCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       375 i~~l~~sp~~~~llas~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      +..+.|.+++..++++|   +.|+.|++||++.....              +.... .+...+....|++++..+++++.
T Consensus       214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p--------------~~~~~~d~~~~~~~~~~d~d~~~L~lggk  279 (493)
T PTZ00421        214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP--------------YSTVDLDQSSALFIPFFDEDTNLLYIGSK  279 (493)
T ss_pred             ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc--------------eeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence            45788999888666544   24899999999874221              11111 22344556678998876664322


Q ss_pred             CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH-hccceEEEeccCC
Q 010997          451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSKP  496 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~sP  496 (496)
                             .|+.|++|++.+      ++++..+. .+..++..++|.|
T Consensus       280 -------gDg~Iriwdl~~------~~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        280 -------GEGNIRCFELMN------ERLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             -------CCCeEEEEEeeC------CceEEEeeccCCCCCcceEecc
Confidence                   359999999984      33322222 2334566666655

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=7.9e-30  Score=269.39  Aligned_cols=263  Identities=17%  Similarity=0.233  Sum_probs=202.2

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC-CCCceEEec
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGG  215 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~sg~  215 (496)
                      +.+...|.+++|+|..+.+||+++.||+|+|||+.+.            +....+.+|.+ .|++++|+| ++.+|+||+
T Consensus       529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~------------~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs  595 (793)
T PLN00181        529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS------------QLVTEMKEHEK-RVWSIDYSSADPTLLASGS  595 (793)
T ss_pred             ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC------------eEEEEecCCCC-CEEEEEEcCCCCCEEEEEc
Confidence            3456789999999877889999999999999999877            55677889987 699999997 688999999


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      .||+|++||+.++..                                        +..+..+ ..|.++.|++..+.+|+
T Consensus       596 ~Dg~v~iWd~~~~~~----------------------------------------~~~~~~~-~~v~~v~~~~~~g~~la  634 (793)
T PLN00181        596 DDGSVKLWSINQGVS----------------------------------------IGTIKTK-ANICCVQFPSESGRSLA  634 (793)
T ss_pred             CCCEEEEEECCCCcE----------------------------------------EEEEecC-CCeEEEEEeCCCCCEEE
Confidence            999999999975422                                        1334433 57899999765448999


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  375 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i  375 (496)
                      +|+.||.|++||++.... ....+.+|...|.++.|.  ++.+|++++.|++|++||++.........++..+.+|...+
T Consensus       635 tgs~dg~I~iwD~~~~~~-~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i  711 (793)
T PLN00181        635 FGSADHKVYYYDLRNPKL-PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK  711 (793)
T ss_pred             EEeCCCeEEEEECCCCCc-cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence            999999999999987653 244556899999999997  47899999999999999998632211246788999999999


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997          376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  455 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s  455 (496)
                      ..++|+|++. +||+|+.|+.|++|+............... .+ ..-.....|...|.+++|+|++..++        +
T Consensus       712 ~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~-~~-~~~~~~~~~~~~V~~v~ws~~~~~lv--------a  780 (793)
T PLN00181        712 NFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTI-DP-VSGLEVDDASQFISSVCWRGQSSTLV--------A  780 (793)
T ss_pred             eEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccC-Cc-ccccccCCCCcEEEEEEEcCCCCeEE--------E
Confidence            9999999998 578999999999999765311100000000 00 00011234567899999999887765        4


Q ss_pred             CCCCCeEEEeec
Q 010997          456 TGGGGTLQIWRM  467 (496)
Q Consensus       456 gg~Dg~i~iw~~  467 (496)
                      |+.||.|+||++
T Consensus       781 ~~~dG~I~i~~~  792 (793)
T PLN00181        781 ANSTGNIKILEM  792 (793)
T ss_pred             ecCCCcEEEEec
Confidence            555699999986

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.6e-31  Score=247.48  Aligned_cols=204  Identities=23%  Similarity=0.444  Sum_probs=187.0

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  219 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~  219 (496)
                      .-+|.+.+|.+ ..+.+++|++|+.|+||+..+.            +.+..+..|.+ -|.+++.+|..++++|+|.|-+
T Consensus        55 ~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~------------ekV~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~  120 (794)
T KOG0276|consen   55 EVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTG------------EKVKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMT  120 (794)
T ss_pred             ccchhhheeee-ccceEEEecCCceEEEEecccc------------eeeEEeecccc-ceeeeeecCCCCeEEecCCccE
Confidence            44788999999 8889999999999999999999            67789999999 6999999999999999999999


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      |++||.+..                                       ....++|.+|..-|.+++|+|.+++.|++++-
T Consensus       121 iKlW~we~~---------------------------------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen  121 IKLWDWENE---------------------------------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             EEEeeccCc---------------------------------------eeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            999999853                                       34458899999999999999999899999999


Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  378 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l  378 (496)
                      |++|++|.+.+..  +..++.+|...|+|+.+-+. +..+|++|+.|.+|+|||.++      ..++.++.+|...|..+
T Consensus       162 DrTVKVWslgs~~--~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt------k~CV~TLeGHt~Nvs~v  233 (794)
T KOG0276|consen  162 DRTVKVWSLGSPH--PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT------KSCVQTLEGHTNNVSFV  233 (794)
T ss_pred             cccEEEEEcCCCC--CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch------HHHHHHhhcccccceEE
Confidence            9999999998877  67788899999999999872 235999999999999999999      88999999999999999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          379 QWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       379 ~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      .|+|.-+ |++||++||+++||+..+.
T Consensus       234 ~fhp~lp-iiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  234 FFHPELP-IIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             EecCCCc-EEEEecCCccEEEecCcce
Confidence            9999998 6789999999999998875

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=6.8e-32  Score=236.02  Aligned_cols=280  Identities=20%  Similarity=0.342  Sum_probs=222.8

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .+-+|.+.|.|++-+|..-..+|+|+.||.|+|||+...            .+..++..|.+ .|.+|++..  ..++++
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR------------~~~~~f~AH~G-~V~Gi~v~~--~~~~tv  125 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR------------ECIRTFKAHEG-LVRGICVTQ--TSFFTV  125 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhh------------hhhheeecccC-ceeeEEecc--cceEEe
Confidence            347999999999999955588999999999999999987            67788999998 799999976  679999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCC---ceeccC--CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSG---SIIKQS--PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      +.|++|+.|.++..       +..........   ......  ....+..+.+|+.....|+..+.--.+.|.++.|+|.
T Consensus       126 gdDKtvK~wk~~~~-------p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpv  198 (433)
T KOG0268|consen  126 GDDKTVKQWKIDGP-------PLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPV  198 (433)
T ss_pred             cCCcceeeeeccCC-------cceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCC
Confidence            99999999997752       10000000000   000001  1123445789999999999999999999999999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      ...+|++|+.|+.|.|||+|... |+...  .....-+.|+|+| ....|++|+.|..+..||+|.+.     .++..+.
T Consensus       199 ETsILas~~sDrsIvLyD~R~~~-Pl~KV--i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~-----~p~~v~~  269 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQAS-PLKKV--ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS-----RPLNVHK  269 (433)
T ss_pred             cchheeeeccCCceEEEecccCC-cccee--eeeccccceecCc-cccceeeccccccceehhhhhhc-----ccchhhc
Confidence            88899999999999999999987 22222  2344568999999 99999999999999999999985     8899999


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      +|.++|.++.|||.|.- |++||.|.+|+||..+.....             -++ +..-...|.++.|+.|..+++   
T Consensus       270 dhvsAV~dVdfsptG~E-fvsgsyDksIRIf~~~~~~SR-------------diY-htkRMq~V~~Vk~S~Dskyi~---  331 (433)
T KOG0268|consen  270 DHVSAVMDVDFSPTGQE-FVSGSYDKSIRIFPVNHGHSR-------------DIY-HTKRMQHVFCVKYSMDSKYII---  331 (433)
T ss_pred             ccceeEEEeccCCCcch-hccccccceEEEeecCCCcch-------------hhh-hHhhhheeeEEEEeccccEEE---
Confidence            99999999999999997 579999999999999874111             111 222345799999999888766   


Q ss_pred             cCCCCCCCCCCeEEEeecC
Q 010997          450 SDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~  468 (496)
                           ||+.|+.|++|.-.
T Consensus       332 -----SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  332 -----SGSDDGNVRLWKAK  345 (433)
T ss_pred             -----ecCCCcceeeeecc
Confidence                 67777999999875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.9e-31  Score=242.12  Aligned_cols=265  Identities=19%  Similarity=0.325  Sum_probs=218.6

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      ....|.+++|+|..+.-+|+.+.- .+.||+..+.            ....++....+ .|+++.|..||++|++|+..|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~------------~~~k~~srFk~-~v~s~~fR~DG~LlaaGD~sG   90 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTR------------SVRKTFSRFKD-VVYSVDFRSDGRLLAAGDESG   90 (487)
T ss_pred             ccCcceeEecCCCCCCceEEeccc-EEEEEecchh------------hhhhhHHhhcc-ceeEEEeecCCeEEEccCCcC
Confidence            345799999999888777776654 7999998876            33334444455 689999999999999999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .|+|+|..+.                                        ..++.+.+|+.+|..+.|+|.+..+|++|+
T Consensus        91 ~V~vfD~k~r----------------------------------------~iLR~~~ah~apv~~~~f~~~d~t~l~s~s  130 (487)
T KOG0310|consen   91 HVKVFDMKSR----------------------------------------VILRQLYAHQAPVHVTKFSPQDNTMLVSGS  130 (487)
T ss_pred             cEEEeccccH----------------------------------------HHHHHHhhccCceeEEEecccCCeEEEecC
Confidence            9999996531                                        123678899999999999999989999999


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  378 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l  378 (496)
                      +|+.+++||+.+..  ....+.+|++.|.|.+|+|.++.+++||+.||.|++||+|...     ..+.++. |..+|.++
T Consensus       131 Dd~v~k~~d~s~a~--v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-----~~v~eln-hg~pVe~v  202 (487)
T KOG0310|consen  131 DDKVVKYWDLSTAY--VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-----SRVVELN-HGCPVESV  202 (487)
T ss_pred             CCceEEEEEcCCcE--EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-----ceeEEec-CCCceeeE
Confidence            99999999999877  4557789999999999999888899999999999999999842     5667776 99999999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCC
Q 010997          379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG  458 (496)
Q Consensus       379 ~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~  458 (496)
                      .+-|.|. ++|+++ ...|+|||+..+++              ++.....|...|+++++..++..|+        |||-
T Consensus       203 l~lpsgs-~iasAg-Gn~vkVWDl~~G~q--------------ll~~~~~H~KtVTcL~l~s~~~rLl--------S~sL  258 (487)
T KOG0310|consen  203 LALPSGS-LIASAG-GNSVKVWDLTTGGQ--------------LLTSMFNHNKTVTCLRLASDSTRLL--------SGSL  258 (487)
T ss_pred             EEcCCCC-EEEEcC-CCeEEEEEecCCce--------------ehhhhhcccceEEEEEeecCCceEe--------eccc
Confidence            9999998 567887 56899999997643              3344455999999999999888888        8889


Q ss_pred             CCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          459 GGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       459 Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      |+.|++|++.+      -+.+..+. ..++|.+++.+|
T Consensus       259 D~~VKVfd~t~------~Kvv~s~~-~~~pvLsiavs~  289 (487)
T KOG0310|consen  259 DRHVKVFDTTN------YKVVHSWK-YPGPVLSIAVSP  289 (487)
T ss_pred             ccceEEEEccc------eEEEEeee-cccceeeEEecC
Confidence            99999999873      44444443 678899998887

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=1.7e-30  Score=245.09  Aligned_cols=242  Identities=21%  Similarity=0.430  Sum_probs=207.0

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec-CCCCcceeeeecCCCCceEEecCCC
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-HQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~-h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      ...|+++.|++ ++.+||+|..+|.|.|||....            +....+.+ |.. .|-+++|+  +..+.+|+.|+
T Consensus       217 ~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~------------k~~~~~~~~h~~-rvg~laW~--~~~lssGsr~~  280 (484)
T KOG0305|consen  217 EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQ------------KKTRTLRGSHAS-RVGSLAWN--SSVLSSGSRDG  280 (484)
T ss_pred             CCceEEEEECC-CCCEEEEeecCCeEEEEehhhc------------cccccccCCcCc-eeEEEecc--CceEEEecCCC
Confidence            78899999999 9999999999999999999887            45556777 665 68999997  66799999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .|..+|++.....                                       ...+.+|...|..++|++++ .+|++|+
T Consensus       281 ~I~~~dvR~~~~~---------------------------------------~~~~~~H~qeVCgLkws~d~-~~lASGg  320 (484)
T KOG0305|consen  281 KILNHDVRISQHV---------------------------------------VSTLQGHRQEVCGLKWSPDG-NQLASGG  320 (484)
T ss_pred             cEEEEEEecchhh---------------------------------------hhhhhcccceeeeeEECCCC-CeeccCC
Confidence            9999999854321                                       12367899999999999999 8999999


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc--CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL  376 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~  376 (496)
                      .|+.+.|||.....  ....+..|...|.+++|+|....+||+|+  .|++|++||..+      +..+..+. -.+.|.
T Consensus       321 nDN~~~Iwd~~~~~--p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~------g~~i~~vd-tgsQVc  391 (484)
T KOG0305|consen  321 NDNVVFIWDGLSPE--PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT------GARIDSVD-TGSQVC  391 (484)
T ss_pred             CccceEeccCCCcc--ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC------CcEecccc-cCCcee
Confidence            99999999996655  56667799999999999999999999975  589999999998      77887776 477899


Q ss_pred             EEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997          377 CVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  455 (496)
Q Consensus       377 ~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s  455 (496)
                      +|.|++....|+.+-+ .++.|.||++.+.               ..+..+.||...|..++|+|++..++        +
T Consensus       392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---------------~~~~~l~gH~~RVl~la~SPdg~~i~--------t  448 (484)
T KOG0305|consen  392 SLIWSKKYKELLSTHGYSENQITLWKYPSM---------------KLVAELLGHTSRVLYLALSPDGETIV--------T  448 (484)
T ss_pred             eEEEcCCCCEEEEecCCCCCcEEEEecccc---------------ceeeeecCCcceeEEEEECCCCCEEE--------E
Confidence            9999999866665544 4789999999885               56777899999999999999988876        6


Q ss_pred             CCCCCeEEEeecCC
Q 010997          456 TGGGGTLQIWRMSD  469 (496)
Q Consensus       456 gg~Dg~i~iw~~~~  469 (496)
                      |+.|.++++|++-+
T Consensus       449 ~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  449 GAADETLRFWNLFD  462 (484)
T ss_pred             ecccCcEEeccccC
Confidence            66679999999975

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=3.9e-29  Score=205.28  Aligned_cols=309  Identities=19%  Similarity=0.284  Sum_probs=229.6

Q ss_pred             CcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCce--EEecCCCCcceeeeec
Q 010997          128 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL--ILTGHQDNAEFALAMC  205 (496)
Q Consensus       128 ~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~l~~h~~~~v~~l~~~  205 (496)
                      .+.+..+.++.-..+|.+++|+| .+.+.|.|++..+.+|-..........-.......|..  .-..|..+.|+|.+|+
T Consensus        20 k~~f~~i~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws   98 (350)
T KOG0641|consen   20 KKHFEAINILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS   98 (350)
T ss_pred             ccceEEEEEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec
Confidence            34567778888899999999999 88899999999999987654432211100001111121  2223444479999999


Q ss_pred             CCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCc------------eeccCCCCCCCCCCCCCCCCcCCeee
Q 010997          206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS------------IIKQSPKPGDGNDKAADGPSVGPRGI  273 (496)
Q Consensus       206 p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (496)
                      |+|.+|++|+.|++|++.-++...+.............+...            .+......++..+.+.+...+...+.
T Consensus        99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen   99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence            999999999999999998877655543333222222222222            23333344555666677788889999


Q ss_pred             eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec--cC-----CCCeEEEEecCCCCcEEEEEcCCC
Q 010997          274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AH-----DADLHCVDWNPLDDNLILTGSADN  346 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~-----~~~v~~i~~sp~~~~~l~sgs~dg  346 (496)
                      +.+|.+.|.++- +-++ .+|++|+.|.+|++||+|-..  ++.++.  -|     .+.|.+++..| .+.+|++|-.|.
T Consensus       179 ~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~ds  253 (350)
T KOG0641|consen  179 LSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADS  253 (350)
T ss_pred             ecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccc--eeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCC
Confidence            999999998873 3344 799999999999999999876  333321  12     36799999999 999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  426 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  426 (496)
                      ...+||+|-      ++++..+..|...|.++.|+|...++| +++.|..|++-|+...-           ...-.+...
T Consensus       254 sc~lydirg------~r~iq~f~phsadir~vrfsp~a~yll-t~syd~~ikltdlqgdl-----------a~el~~~vv  315 (350)
T KOG0641|consen  254 SCMLYDIRG------GRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYDMKIKLTDLQGDL-----------AHELPIMVV  315 (350)
T ss_pred             ceEEEEeeC------CceeeeeCCCccceeEEEeCCCceEEE-EecccceEEEeecccch-----------hhcCceEEE
Confidence            999999998      899999999999999999999988765 99999999999997631           111234556


Q ss_pred             cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ..|.+.+..+.|+|++-.++        +.+.|.++.+|-+.
T Consensus       316 ~ehkdk~i~~rwh~~d~sfi--------sssadkt~tlwa~~  349 (350)
T KOG0641|consen  316 AEHKDKAIQCRWHPQDFSFI--------SSSADKTATLWALN  349 (350)
T ss_pred             EeccCceEEEEecCccceee--------eccCcceEEEeccC
Confidence            78999999999999876655        55667999999775

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.4e-30  Score=252.33  Aligned_cols=258  Identities=17%  Similarity=0.248  Sum_probs=188.0

Q ss_pred             EEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCc
Q 010997          158 THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDP  236 (496)
Q Consensus       158 t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~  236 (496)
                      +|+.+|.|++|+....            .+...+.+|.+ .|.+++|+|+ +.+|+||+.||+|+|||+.+......   
T Consensus        49 gGG~~gvI~L~~~~r~------------~~v~~L~gH~~-~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---  112 (568)
T PTZ00420         49 GGGLIGAIRLENQMRK------------PPVIKLKGHTS-SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---  112 (568)
T ss_pred             CCCceeEEEeeecCCC------------ceEEEEcCCCC-CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---
Confidence            3667889999998765            56678899987 7999999997 78999999999999999975321000   


Q ss_pred             cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccce
Q 010997          237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI  316 (496)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  316 (496)
                                                   ....++..+.+|...|.+++|+|++..+|++++.|++|+|||++++.  ..
T Consensus       113 -----------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~  161 (568)
T PTZ00420        113 -----------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RA  161 (568)
T ss_pred             -----------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EE
Confidence                                         00123456788999999999999986677899999999999999887  33


Q ss_pred             eeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE-----EEcCCCCCEEEEE
Q 010997          317 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV-----QWSPDKSSVFGSS  391 (496)
Q Consensus       317 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l-----~~sp~~~~llas~  391 (496)
                      ..+ .|...|.+++|+| ++.+|++++.|+.|+|||+++      +..+.++.+|.+.+.+.     .|++++.+|+ ++
T Consensus       162 ~~i-~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs------g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il-Tt  232 (568)
T PTZ00420        162 FQI-NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK------QEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL-ST  232 (568)
T ss_pred             EEE-ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC------CcEEEEEecccCCceeEEEEeeeEcCCCCEEE-EE
Confidence            444 3667899999999 899999999999999999998      77888999998875443     3458888655 55


Q ss_pred             eCC----CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          392 AED----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       392 ~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      +.|    +.|+|||++....            +.....+..+.+.+..+ |.++...+++++       +.|++|++|++
T Consensus       233 G~d~~~~R~VkLWDlr~~~~------------pl~~~~ld~~~~~L~p~-~D~~tg~l~lsG-------kGD~tIr~~e~  292 (568)
T PTZ00420        233 GFSKNNMREMKLWDLKNTTS------------ALVTMSIDNASAPLIPH-YDESTGLIYLIG-------KGDGNCRYYQH  292 (568)
T ss_pred             EcCCCCccEEEEEECCCCCC------------ceEEEEecCCccceEEe-eeCCCCCEEEEE-------ECCCeEEEEEc
Confidence            545    4799999986421            12223344444444433 334445556644       44599999999


Q ss_pred             CCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          468 SDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       468 ~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ...    ....+.+.. +..++.+++|.|
T Consensus       293 ~~~----~~~~l~~~~-s~~p~~g~~f~P  316 (568)
T PTZ00420        293 SLG----SIRKVNEYK-SCSPFRSFGFLP  316 (568)
T ss_pred             cCC----cEEeecccc-cCCCccceEEcc
Confidence            732    112233333 556777888877

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=8.4e-30  Score=233.07  Aligned_cols=282  Identities=17%  Similarity=0.284  Sum_probs=219.8

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ...+|...++-.+|+| .|.++|+|...|.|+|||......          .....++.-.+ +|..|+|++++++|+..
T Consensus        54 iYtEH~~~vtVAkySP-sG~yiASGD~sG~vRIWdtt~~~h----------iLKnef~v~aG-~I~Di~Wd~ds~RI~av  121 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSP-SGFYIASGDVSGKVRIWDTTQKEH----------ILKNEFQVLAG-PIKDISWDFDSKRIAAV  121 (603)
T ss_pred             eeccccceeEEEEeCC-CceEEeecCCcCcEEEEeccCcce----------eeeeeeeeccc-ccccceeCCCCcEEEEE
Confidence            4457999999999999 799999999999999999876421          11123344444 78999999999988877


Q ss_pred             cC--C--CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          215 GK--D--KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       215 ~~--D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      +.  +  |.+.+||.-+                                          .+..+.+|...|+++.|-|..
T Consensus       122 GEGrerfg~~F~~DSG~------------------------------------------SvGei~GhSr~ins~~~KpsR  159 (603)
T KOG0318|consen  122 GEGRERFGHVFLWDSGN------------------------------------------SVGEITGHSRRINSVDFKPSR  159 (603)
T ss_pred             ecCccceeEEEEecCCC------------------------------------------ccceeeccceeEeeeeccCCC
Confidence            63  2  3566676532                                          125688999999999999999


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-  369 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-  369 (496)
                      +..++||++|++|.+|+=.-.+  ....+..|..-|+|+.|+| ++..||+++.||.|.+||-.+      +..+..+. 
T Consensus       160 PfRi~T~sdDn~v~ffeGPPFK--Fk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGkt------ge~vg~l~~  230 (603)
T KOG0318|consen  160 PFRIATGSDDNTVAFFEGPPFK--FKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKT------GEKVGELED  230 (603)
T ss_pred             ceEEEeccCCCeEEEeeCCCee--eeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCC------ccEEEEecC
Confidence            9999999999999999854444  4556778999999999999 899999999999999999998      88888887 


Q ss_pred             --cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCC--C--------------------------CCCCC
Q 010997          370 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP--R--------------------------TTNYP  419 (496)
Q Consensus       370 --~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~--~--------------------------~~~~~  419 (496)
                        +|++.|.+++|+||+.. |+|++.|.+++|||+.......+..-  .                          -....
T Consensus       231 ~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d  309 (603)
T KOG0318|consen  231 SDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSD  309 (603)
T ss_pred             CCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccC
Confidence              89999999999999997 56999999999999987432211100  0                          00011


Q ss_pred             CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEecc
Q 010997          420 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTS  494 (496)
Q Consensus       420 ~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~  494 (496)
                      ...+....||...|+++..+|++.+++        ||+.||.|.-|+..      .+..-+-. ++|...|.+++-
T Consensus       310 ~~~~~~i~GHnK~ITaLtv~~d~~~i~--------SgsyDG~I~~W~~~------~g~~~~~~g~~h~nqI~~~~~  371 (603)
T KOG0318|consen  310 PSVLKVISGHNKSITALTVSPDGKTIY--------SGSYDGHINSWDSG------SGTSDRLAGKGHTNQIKGMAA  371 (603)
T ss_pred             CChhheecccccceeEEEEcCCCCEEE--------eeccCceEEEEecC------CccccccccccccceEEEEee
Confidence            225567789999999999999997776        77777999999998      33322221 567777776653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.4e-30  Score=250.20  Aligned_cols=252  Identities=20%  Similarity=0.316  Sum_probs=195.1

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCc--------------------------------cc-------
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNR--------------------------------HA-------  178 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~--------------------------------~~-------  178 (496)
                      +|.|.|+++.|++ +|+|||+||.||.|+||.+...+..                                ..       
T Consensus       265 ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            7999999999999 9999999999999999998761000                                00       


Q ss_pred             ---------cCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCcee
Q 010997          179 ---------VLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII  249 (496)
Q Consensus       179 ---------~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  249 (496)
                               .......+|+..+.||.+ .|..|.|+.+ ++|+|++.|++|+||++....+                   
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~-DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~C-------------------  402 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTA-DILDLSWSKN-NFLLSSSMDKTVRLWHPGRKEC-------------------  402 (712)
T ss_pred             CCccccCCCccccccccchhhhhccch-hheecccccC-CeeEeccccccEEeecCCCcce-------------------
Confidence                     000123377888999999 6899999954 5899999999999999975443                   


Q ss_pred             ccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEE
Q 010997          250 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV  329 (496)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i  329 (496)
                                            .....|.+-|+||+|+|-+.++|++|+-||.|+||++...+  +..- ..-..-|+++
T Consensus       403 ----------------------L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W-~Dl~~lITAv  457 (712)
T KOG0283|consen  403 ----------------------LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDW-NDLRDLITAV  457 (712)
T ss_pred             ----------------------eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEee-hhhhhhheeE
Confidence                                  33456999999999999888999999999999999998776  3333 3444889999


Q ss_pred             EecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---------cCCCCEEEEEEcCCCCC-EEEEEeCCCcEEE
Q 010997          330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---------GHSAAVLCVQWSPDKSS-VFGSSAEDGLLNI  399 (496)
Q Consensus       330 ~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---------~h~~~i~~l~~sp~~~~-llas~~~dg~i~i  399 (496)
                      +|.| +|++.++|+.+|.+++|+...+      +....+.         .|. .|+.++|.|.... +| ..+.|..|+|
T Consensus       458 cy~P-dGk~avIGt~~G~C~fY~t~~l------k~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vL-VTSnDSrIRI  528 (712)
T KOG0283|consen  458 CYSP-DGKGAVIGTFNGYCRFYDTEGL------KLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVL-VTSNDSRIRI  528 (712)
T ss_pred             Eecc-CCceEEEEEeccEEEEEEccCC------eEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEE-EecCCCceEE
Confidence            9999 8999999999999999999873      3322221         123 7999999986654 55 6667999999


Q ss_pred             EECCCCCcccCCCCCCCCCCCeeEEEecCCCC--CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          400 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       400 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ||++..               .++..+.|+..  .=....|+.+|.+++        +|+.|..|+||++.
T Consensus       529 ~d~~~~---------------~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV--------s~seDs~VYiW~~~  576 (712)
T KOG0283|consen  529 YDGRDK---------------DLVHKFKGFRNTSSQISASFSSDGKHIV--------SASEDSWVYIWKND  576 (712)
T ss_pred             Eeccch---------------hhhhhhcccccCCcceeeeEccCCCEEE--------EeecCceEEEEeCC
Confidence            999663               33444555433  234568889888766        44456999999985

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-30  Score=250.00  Aligned_cols=235  Identities=20%  Similarity=0.345  Sum_probs=197.8

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      +.++.+|.|+|..+.|+| ...++++|++|-.|+||++...            +++.++.||-+ -|..+.|++.-.+|+
T Consensus        44 i~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~r------------rclftL~GHlD-YVRt~~FHheyPWIl  109 (1202)
T KOG0292|consen   44 IDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTR------------RCLFTLLGHLD-YVRTVFFHHEYPWIL  109 (1202)
T ss_pred             HhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccc------------eehhhhccccc-eeEEeeccCCCceEE
Confidence            345568999999999999 7779999999999999999988            88889999999 799999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      |+|.|.+|+||+..+..+                                        +..+.||..-|.|.+|+|.. .
T Consensus       110 SASDDQTIrIWNwqsr~~----------------------------------------iavltGHnHYVMcAqFhptE-D  148 (1202)
T KOG0292|consen  110 SASDDQTIRIWNWQSRKC----------------------------------------IAVLTGHNHYVMCAQFHPTE-D  148 (1202)
T ss_pred             EccCCCeEEEEeccCCce----------------------------------------EEEEecCceEEEeeccCCcc-c
Confidence            999999999999986544                                        47899999999999999987 6


Q ss_pred             eEEEEcCCCeEEEEEccCCC---------------------------ccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997          293 EFCSVGDDSCLILWDARVGT---------------------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  345 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d  345 (496)
                      +++++|-|.+|++||+..-+                           ......+.+|...|+-++|+| .-.+|++|+.|
T Consensus       149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DD  227 (1202)
T KOG0292|consen  149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADD  227 (1202)
T ss_pred             eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCc
Confidence            89999999999999985321                           012345678999999999999 88999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  425 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  425 (496)
                      ..|++|.+...+    .-.+.+..+|.+.|.++-|+|... ++.|.|+|+.|+|||+.+.               ..+.+
T Consensus       228 RqVKlWrmnetK----aWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kR---------------t~v~t  287 (1202)
T KOG0292|consen  228 RQVKLWRMNETK----AWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKR---------------TSVQT  287 (1202)
T ss_pred             ceeeEEEecccc----ceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccc---------------cceee
Confidence            999999998743    345677889999999999999888 5569999999999999885               23333


Q ss_pred             ecCCCCCcceEEecCCCC
Q 010997          426 HAGHRDKVVDFHWNASDP  443 (496)
Q Consensus       426 ~~~h~~~V~~~~~~p~~~  443 (496)
                      +..-.+.-+.++-+|..+
T Consensus       288 frrendRFW~laahP~lN  305 (1202)
T KOG0292|consen  288 FRRENDRFWILAAHPELN  305 (1202)
T ss_pred             eeccCCeEEEEEecCCcc
Confidence            333345566666666543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=8.2e-30  Score=214.38  Aligned_cols=277  Identities=14%  Similarity=0.219  Sum_probs=221.3

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      +.+.+|..+++.|+|.. +|++|.+++.|.++.||-..++            ..+.++.||++ +|+|++.+.+.++|++
T Consensus         4 i~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nG------------erlGty~GHtG-avW~~Did~~s~~liT   69 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNG------------ERLGTYDGHTG-AVWCCDIDWDSKHLIT   69 (327)
T ss_pred             cccccCccccceEEecC-CCcEEEEecCCCCceEEEecCC------------ceeeeecCCCc-eEEEEEecCCcceeee
Confidence            34568999999999999 9999999999999999998777            56778999998 7999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.|.++++||+++++....                                        + ....+|..+.|++++ ++
T Consensus        70 GSAD~t~kLWDv~tGk~la~----------------------------------------~-k~~~~Vk~~~F~~~g-n~  107 (327)
T KOG0643|consen   70 GSADQTAKLWDVETGKQLAT----------------------------------------W-KTNSPVKRVDFSFGG-NL  107 (327)
T ss_pred             ccccceeEEEEcCCCcEEEE----------------------------------------e-ecCCeeEEEeeccCC-cE
Confidence            99999999999998765322                                        2 235689999999998 55


Q ss_pred             EEEEc-----CCCeEEEEEccCCC-----ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC-
Q 010997          294 FCSVG-----DDSCLILWDARVGT-----SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG-  362 (496)
Q Consensus       294 l~s~~-----~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-  362 (496)
                      ++.+.     ..+.|.++|++...     ..+......+.+.++.+.|.| .+.+|++|..||.|.+||+++      + 
T Consensus       108 ~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~------g~  180 (327)
T KOG0643|consen  108 ILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDART------GK  180 (327)
T ss_pred             EEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEccc------Cc
Confidence            55553     34789999998432     113444557789999999999 899999999999999999998      4 


Q ss_pred             CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCC
Q 010997          363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD  442 (496)
Q Consensus       363 ~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~  442 (496)
                      ..+...+.|...|+.++++|+..+ |++++.|.+-++||+.+.               +++.... -..+|++.+++|..
T Consensus       181 ~~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl---------------~v~Kty~-te~PvN~aaisP~~  243 (327)
T KOG0643|consen  181 ELVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTL---------------EVLKTYT-TERPVNTAAISPLL  243 (327)
T ss_pred             eeeechhhhccccccccccCCcce-EEecccCccceeeeccce---------------eeEEEee-ecccccceeccccc
Confidence            456666889999999999999985 679999999999999884               3333333 34589999999988


Q ss_pred             CcEEEEecCCCC----CCCCCC--eEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          443 PWTVVSVSDDCD----STGGGG--TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       443 ~~l~~s~s~d~~----sgg~Dg--~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ..++..++.+.-    |....|  .-++|++-      ..+.+..+++|-+||++|||||
T Consensus       244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i------~eEEigrvkGHFGPINsvAfhP  297 (327)
T KOG0643|consen  244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLI------FEEEIGRVKGHFGPINSVAFHP  297 (327)
T ss_pred             ceEEecCCceeeeeeeecccccchhhhHHHHH------HHHHhccccccccCcceeEECC
Confidence            888876555421    111111  22344444      4678889999999999999999

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.2e-30  Score=225.00  Aligned_cols=277  Identities=15%  Similarity=0.258  Sum_probs=229.4

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ...++..+.+-|.+|+| ++++|++|+.||.|.|||..++.....+    ..+..-.+.-+.+ +|.|+.|+.|...|++
T Consensus       207 ~IKFg~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDL----kYQAqd~fMMmd~-aVlci~FSRDsEMlAs  280 (508)
T KOG0275|consen  207 SIKFGQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDL----KYQAQDNFMMMDD-AVLCISFSRDSEMLAS  280 (508)
T ss_pred             heecccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhh----hhhhhcceeeccc-ceEEEeecccHHHhhc
Confidence            34567888899999999 9999999999999999999988543322    1122334555666 7999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCCc
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~  292 (496)
                      |+.||.|++|.++++.+.                                        +.|. .|+..|+++.|+.++ .
T Consensus       281 GsqDGkIKvWri~tG~Cl----------------------------------------RrFdrAHtkGvt~l~FSrD~-S  319 (508)
T KOG0275|consen  281 GSQDGKIKVWRIETGQCL----------------------------------------RRFDRAHTKGVTCLSFSRDN-S  319 (508)
T ss_pred             cCcCCcEEEEEEecchHH----------------------------------------HHhhhhhccCeeEEEEccCc-c
Confidence            999999999999987764                                        3333 799999999999999 6


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc--
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--  370 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~--  370 (496)
                      .+++++.|.++++.-+.+++  ++..+.+|.+.|+...|.+ +|..+++++.||+|++|+..+      ..++.+|+.  
T Consensus       320 qiLS~sfD~tvRiHGlKSGK--~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Kt------teC~~Tfk~~~  390 (508)
T KOG0275|consen  320 QILSASFDQTVRIHGLKSGK--CLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKT------TECLSTFKPLG  390 (508)
T ss_pred             hhhcccccceEEEeccccch--hHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcc------hhhhhhccCCC
Confidence            79999999999999999998  7888899999999999999 999999999999999999998      788888864  


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec-C--CCCCcceEEecCCCCcEEE
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-G--HRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~--h~~~V~~~~~~p~~~~l~~  447 (496)
                      ...+|.++-.-|.++--++.+...++|.|-++..                +.+..+. |  ..+...++..+|.|.|+. 
T Consensus       391 ~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----------------QvVrsfsSGkREgGdFi~~~lSpkGewiY-  453 (508)
T KOG0275|consen  391 TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----------------QVVRSFSSGKREGGDFINAILSPKGEWIY-  453 (508)
T ss_pred             CcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----------------eEEeeeccCCccCCceEEEEecCCCcEEE-
Confidence            4567899998887766677888889999999876                2333322 1  234566778999999977 


Q ss_pred             EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                             +.|.|+.++.|.+.      +|.+..++.-|..-|..++-||
T Consensus       454 -------cigED~vlYCF~~~------sG~LE~tl~VhEkdvIGl~HHP  489 (508)
T KOG0275|consen  454 -------CIGEDGVLYCFSVL------SGKLERTLPVHEKDVIGLTHHP  489 (508)
T ss_pred             -------EEccCcEEEEEEee------cCceeeeeecccccccccccCc
Confidence                   55667999999998      7888888888988888888777

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.9e-29  Score=237.67  Aligned_cols=271  Identities=17%  Similarity=0.315  Sum_probs=226.0

Q ss_pred             cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      ...+.+.+|...|..++++. +..++++|+. ++|+||+..+.            +++.++..-   .+.+..|.|.+++
T Consensus       364 ~~~i~~~GHR~dVRsl~vS~-d~~~~~Sga~-~SikiWn~~t~------------kciRTi~~~---y~l~~~Fvpgd~~  426 (888)
T KOG0306|consen  364 TSNIEIGGHRSDVRSLCVSS-DSILLASGAG-ESIKIWNRDTL------------KCIRTITCG---YILASKFVPGDRY  426 (888)
T ss_pred             cceeeeccchhheeEEEeec-CceeeeecCC-CcEEEEEccCc------------ceeEEeccc---cEEEEEecCCCce
Confidence            34567789999999999998 7777777765 59999999988            566666543   5789999999999


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      +++|...|.+.++|+.....                                        +.....|.+.|.+++.+|++
T Consensus       427 Iv~G~k~Gel~vfdlaS~~l----------------------------------------~Eti~AHdgaIWsi~~~pD~  466 (888)
T KOG0306|consen  427 IVLGTKNGELQVFDLASASL----------------------------------------VETIRAHDGAIWSISLSPDN  466 (888)
T ss_pred             EEEeccCCceEEEEeehhhh----------------------------------------hhhhhccccceeeeeecCCC
Confidence            99999999999999975322                                        24456899999999999999


Q ss_pred             CceEEEEcCCCeEEEEEccCCCc-----cc-ee----eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997          291 AQEFCSVGDDSCLILWDARVGTS-----PV-IK----VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  360 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~-----~~-~~----~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~  360 (496)
                       ..+++||.|.+|++||..-...     .. +.    ....-+..|.|+.+|| ++.+||++=.|.+|++|-+.+     
T Consensus       467 -~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt-----  539 (888)
T KOG0306|consen  467 -KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT-----  539 (888)
T ss_pred             -CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc-----
Confidence             7899999999999999753221     00 10    1113467899999999 999999999999999999999     


Q ss_pred             CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                       .+...++-||.-||.|+..||++. +++|||.|..|+||-+.-+               .+-..+.+|.+.|+++.|.|
T Consensus       540 -lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFG---------------DCHKS~fAHdDSvm~V~F~P  602 (888)
T KOG0306|consen  540 -LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFG---------------DCHKSFFAHDDSVMSVQFLP  602 (888)
T ss_pred             -eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccc---------------hhhhhhhcccCceeEEEEcc
Confidence             567888999999999999999998 6789999999999999885               33445678999999999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          441 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       441 ~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .... +.       |+|.|+.|+-||-.      .-+.++.+.+|...|+++|.+|
T Consensus       603 ~~~~-FF-------t~gKD~kvKqWDg~------kFe~iq~L~~H~~ev~cLav~~  644 (888)
T KOG0306|consen  603 KTHL-FF-------TCGKDGKVKQWDGE------KFEEIQKLDGHHSEVWCLAVSP  644 (888)
T ss_pred             ccee-EE-------EecCcceEEeechh------hhhhheeeccchheeeeeEEcC
Confidence            6554 44       55666999999988      6789999999999999999887

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1e-29  Score=218.06  Aligned_cols=281  Identities=18%  Similarity=0.251  Sum_probs=211.7

Q ss_pred             cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccc----cCC-CCCC-CCceEEecCCCCcceeeee
Q 010997          131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA----VLG-ATNS-RPDLILTGHQDNAEFALAM  204 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~----~~~-~~~~-~~~~~l~~h~~~~v~~l~~  204 (496)
                      .+..-...|++++.+.+|+| +|.++|||+.|-+|+|.|++....+..    ..+ .++. ..+.+|-.|.+ .|+++.|
T Consensus       103 yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~F  180 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLDF  180 (430)
T ss_pred             cceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-cccceee
Confidence            34445668999999999999 999999999999999999984322111    111 1122 34567888988 7999999


Q ss_pred             cCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEE
Q 010997          205 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  284 (496)
Q Consensus       205 ~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  284 (496)
                      +|....|++|+.|++|+++|+........                                      ........+|.++
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~saKrA--------------------------------------~K~~qd~~~vrsi  222 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTSAKRA--------------------------------------FKVFQDTEPVRSI  222 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHHHHHH--------------------------------------HHHhhccceeeeE
Confidence            99999999999999999999975322110                                      1112235689999


Q ss_pred             EEccCCCceEEEEcCCCeEEEEEccCCCccc-eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997          285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~  363 (496)
                      .|+|.| .+++.|.+-.++++||+.+.+.-. ......|.+.|+++.+++ .+.+.++|+.||.|+|||--+      .+
T Consensus       223 SfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS------~r  294 (430)
T KOG0640|consen  223 SFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVS------NR  294 (430)
T ss_pred             eecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeecccc------HH
Confidence            999999 789999999999999999876211 112357999999999999 999999999999999999887      78


Q ss_pred             CceEec-cCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC-----------------C--------
Q 010997          364 PINKFE-GHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-----------------T--------  416 (496)
Q Consensus       364 ~~~~~~-~h~-~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~-----------------~--------  416 (496)
                      ++.++. .|. ..|.+..|..+++++| +.+.|..|++|.+.++...+.-..+.                 +        
T Consensus       295 Cv~t~~~AH~gsevcSa~Ftkn~kyiL-sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa  373 (430)
T KOG0640|consen  295 CVRTIGNAHGGSEVCSAVFTKNGKYIL-SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA  373 (430)
T ss_pred             HHHHHHhhcCCceeeeEEEccCCeEEe-ecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc
Confidence            888884 454 4699999999999876 88899999999998753322111100                 0        


Q ss_pred             C---------CCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          417 N---------YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       417 ~---------~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .         .....-.-..||.+.+..+.-+|.++.++        |+|.|-.+++|--+
T Consensus       374 s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~Fm--------TcsdD~raRFWyrr  426 (430)
T KOG0640|consen  374 SNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFM--------TCSDDFRARFWYRR  426 (430)
T ss_pred             cCceeeccccchhhhhhcccCCCCCceEEEeCCCCCcee--------eecccceeeeeeec
Confidence            0         00001112358999999999999998765        55556999999654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-29  Score=218.23  Aligned_cols=309  Identities=16%  Similarity=0.263  Sum_probs=228.3

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .+.+|.+.|+.++... ...++.+++.|-+.+||.++++            +++..+.||.+ .|+++.|++.+.+++++
T Consensus       143 e~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg------------~CL~~Y~GH~G-SVNsikfh~s~~L~lTa  208 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESG------------ACLATYTGHTG-SVNSIKFHNSGLLLLTA  208 (481)
T ss_pred             hhcccccceeeehhhc-CCcceeecccccceeEEeeccc------------cceeeeccccc-ceeeEEeccccceEEEc
Confidence            4568999999999877 5569999999999999999999            88899999999 69999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCC--CCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP--KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +.|++-.||...-.-....  +.......+.........  ...++........-.-|+..+.+|...|.+..|-..+ .
T Consensus       209 SGD~taHIW~~av~~~vP~--~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~  285 (481)
T KOG0300|consen  209 SGDETAHIWKAAVNWEVPS--NNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-Q  285 (481)
T ss_pred             cCCcchHHHHHhhcCcCCC--CCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-c
Confidence            9999999997431100000  000000000000000000  0011111111112234667889999999999998877 7


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      .+++++.|.+-.+||++++.  .+..+.+|....+.++-+| ...++++++.|.+.++||+|..     -..+..|++|.
T Consensus       286 Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-----I~sV~VFQGHt  357 (481)
T KOG0300|consen  286 QMVTASWDRTANLWDVETGE--VVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-----IQSVAVFQGHT  357 (481)
T ss_pred             eeeeeeccccceeeeeccCc--eeccccCcchhccccccCC-cceEEEEeccCceeEeccchhh-----cceeeeecccc
Confidence            89999999999999999998  7888899999999999999 8999999999999999999952     46688999999


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      ..|+++.|.-+.+  +++|++|.+|+|||++.....              +.... -.++++.++.+..+ -+||---+ 
T Consensus       358 dtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsp--------------lATIR-tdS~~NRvavs~g~-~iIAiPhD-  418 (481)
T KOG0300|consen  358 DTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSP--------------LATIR-TDSPANRVAVSKGH-PIIAIPHD-  418 (481)
T ss_pred             cceeEEEEecCCc--eeecCCCceEEEeeeccccCc--------------ceeee-cCCccceeEeecCC-ceEEeccC-
Confidence            9999999998876  469999999999999986321              11222 24578888888744 34544333 


Q ss_pred             CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                            +..|++||++.....  .-+-..-++|..-|.++||.
T Consensus       419 ------NRqvRlfDlnG~Rla--RlPrtsRqgHrRMV~c~AW~  453 (481)
T KOG0300|consen  419 ------NRQVRLFDLNGNRLA--RLPRTSRQGHRRMVTCCAWL  453 (481)
T ss_pred             ------CceEEEEecCCCccc--cCCcccccccceeeeeeecc
Confidence                  489999999843111  01112336899999999995

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.5e-28  Score=212.35  Aligned_cols=264  Identities=16%  Similarity=0.283  Sum_probs=211.3

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC--
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK--  216 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~--  216 (496)
                      -.+.|+++.|++ +|.+|++++.|-+++|||..++            +...++..+.- .+..++|....+.++.++.  
T Consensus        13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g------------~~~~ti~skky-G~~~~~Fth~~~~~i~sStk~   78 (311)
T KOG1446|consen   13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSG------------KQVKTINSKKY-GVDLACFTHHSNTVIHSSTKE   78 (311)
T ss_pred             CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCC------------ceeeEeecccc-cccEEEEecCCceEEEccCCC
Confidence            467899999999 8899999999999999999988            55666666655 4678888777776776665  


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      |.+|+.-++.+.+                                        .++.|.||...|++++.+|-+ ..|++
T Consensus        79 d~tIryLsl~dNk----------------------------------------ylRYF~GH~~~V~sL~~sP~~-d~FlS  117 (311)
T KOG1446|consen   79 DDTIRYLSLHDNK----------------------------------------YLRYFPGHKKRVNSLSVSPKD-DTFLS  117 (311)
T ss_pred             CCceEEEEeecCc----------------------------------------eEEEcCCCCceEEEEEecCCC-CeEEe
Confidence            8899999987543                                        358899999999999999998 78999


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc---CCC
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSA  373 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---h~~  373 (496)
                      ++.|++|++||+|..+.+...    +...-..++|+| .|-++|++.....|+|||+|+..    ..|..++.-   ...
T Consensus       118 ~S~D~tvrLWDlR~~~cqg~l----~~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~d----kgPF~tf~i~~~~~~  188 (311)
T KOG1446|consen  118 SSLDKTVRLWDLRVKKCQGLL----NLSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFD----KGPFTTFSITDNDEA  188 (311)
T ss_pred             cccCCeEEeeEecCCCCceEE----ecCCCcceeECC-CCcEEEEecCCCeEEEEEecccC----CCCceeEccCCCCcc
Confidence            999999999999987733222    223345689999 89999999988899999999986    456666643   367


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc---ceEEecCCCCcEEEEec
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV---VDFHWNASDPWTVVSVS  450 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V---~~~~~~p~~~~l~~s~s  450 (496)
                      ..+.|.|||+|++|| .+...+.+++.|.-.+               .++..+.++...-   .+..|.|++.+++    
T Consensus       189 ew~~l~FS~dGK~iL-lsT~~s~~~~lDAf~G---------------~~~~tfs~~~~~~~~~~~a~ftPds~Fvl----  248 (311)
T KOG1446|consen  189 EWTDLEFSPDGKSIL-LSTNASFIYLLDAFDG---------------TVKSTFSGYPNAGNLPLSATFTPDSKFVL----  248 (311)
T ss_pred             ceeeeEEcCCCCEEE-EEeCCCcEEEEEccCC---------------cEeeeEeeccCCCCcceeEEECCCCcEEE----
Confidence            889999999999877 5556889999998875               3444444444322   5788999988766    


Q ss_pred             CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHh-ccceEEEeccCC
Q 010997          451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSKP  496 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~sP  496 (496)
                          +|+.||+|.+|++.      ++..+..+.+ +.+++.++.|.|
T Consensus       249 ----~gs~dg~i~vw~~~------tg~~v~~~~~~~~~~~~~~~fnP  285 (311)
T KOG1446|consen  249 ----SGSDDGTIHVWNLE------TGKKVAVLRGPNGGPVSCVRFNP  285 (311)
T ss_pred             ----EecCCCcEEEEEcC------CCcEeeEecCCCCCCccccccCC
Confidence                55667999999998      7888888888 688899999988

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=9.1e-30  Score=232.22  Aligned_cols=305  Identities=18%  Similarity=0.218  Sum_probs=224.4

Q ss_pred             CcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC
Q 010997          128 SPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT  207 (496)
Q Consensus       128 ~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~  207 (496)
                      .|.-..+++.+|+..|.++++.| .|-.|++|+.|-.|++||+.........     .+.+.-..+|   .|.++.|++.
T Consensus       155 IP~shEi~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~-----fr~l~P~E~h---~i~sl~ys~T  225 (641)
T KOG0772|consen  155 IPGSHEIQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRS-----FRQLQPCETH---QINSLQYSVT  225 (641)
T ss_pred             CCccceEeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchh-----hhccCccccc---ccceeeecCC
Confidence            34555678889999999999999 8889999999999999999887433211     1222223344   5789999999


Q ss_pred             CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997          208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  287 (496)
Q Consensus       208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  287 (496)
                      |..|+..+.....+|+|-.........        .+..                    ...-+..-.+|...++|.+|+
T Consensus       226 g~~iLvvsg~aqakl~DRdG~~~~e~~--------KGDQ--------------------YI~Dm~nTKGHia~lt~g~wh  277 (641)
T KOG0772|consen  226 GDQILVVSGSAQAKLLDRDGFEIVEFS--------KGDQ--------------------YIRDMYNTKGHIAELTCGCWH  277 (641)
T ss_pred             CCeEEEEecCcceeEEccCCceeeeee--------ccch--------------------hhhhhhccCCceeeeeccccc
Confidence            998888888889999997643211000        0000                    001113346899999999999


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccc--eee--eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPV--IKV--EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~--~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~  363 (496)
                      |.....|+|++.||+++|||+...+...  +..  ..+..-.++.++|+| ++.+||+|..||.|.+||.++...   ..
T Consensus       278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v---~p  353 (641)
T KOG0772|consen  278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV---RP  353 (641)
T ss_pred             cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc---cc
Confidence            9998899999999999999998765321  111  123445789999999 999999999999999999877542   12


Q ss_pred             CceEeccCCC--CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC--CCCCcceEEec
Q 010997          364 PINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWN  439 (496)
Q Consensus       364 ~~~~~~~h~~--~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~  439 (496)
                      ....-..|..  .|++|.||++|++| ++-+.|+++++||++..++.+.              ...|  ..-+-++++|+
T Consensus       354 ~~~vk~AH~~g~~Itsi~FS~dg~~L-lSRg~D~tLKvWDLrq~kkpL~--------------~~tgL~t~~~~tdc~FS  418 (641)
T KOG0772|consen  354 VMKVKDAHLPGQDITSISFSYDGNYL-LSRGFDDTLKVWDLRQFKKPLN--------------VRTGLPTPFPGTDCCFS  418 (641)
T ss_pred             ceEeeeccCCCCceeEEEeccccchh-hhccCCCceeeeeccccccchh--------------hhcCCCccCCCCccccC
Confidence            2334467877  89999999999964 6999999999999998755432              2222  12245789999


Q ss_pred             CCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          440 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       440 p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      |+...++...|--  -+..-|.+.+||..      +-+.+.++.-....|..+.|||
T Consensus       419 Pd~kli~TGtS~~--~~~~~g~L~f~d~~------t~d~v~ki~i~~aSvv~~~Whp  467 (641)
T KOG0772|consen  419 PDDKLILTGTSAP--NGMTAGTLFFFDRM------TLDTVYKIDISTASVVRCLWHP  467 (641)
T ss_pred             CCceEEEeccccc--CCCCCceEEEEecc------ceeeEEEecCCCceEEEEeecc
Confidence            9877555433333  45566799999988      6677777777788999999998

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=5.4e-29  Score=236.70  Aligned_cols=261  Identities=21%  Similarity=0.332  Sum_probs=215.9

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .+++++-. -+.+..|.| +++++++|...|.+.|||+...            ..+-+.+.|.+ +++.++.+||+..++
T Consensus       406 ciRTi~~~-y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~------------~l~Eti~AHdg-aIWsi~~~pD~~g~v  470 (888)
T KOG0306|consen  406 CIRTITCG-YILASKFVP-GDRYIVLGTKNGELQVFDLASA------------SLVETIRAHDG-AIWSISLSPDNKGFV  470 (888)
T ss_pred             eeEEeccc-cEEEEEecC-CCceEEEeccCCceEEEEeehh------------hhhhhhhcccc-ceeeeeecCCCCceE
Confidence            34444444 788999999 8889999999999999999987            44556778988 799999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +||.|.+|++||..-.........                        .   .......+++ .-...|.|+.++|++ .
T Consensus       471 T~saDktVkfWdf~l~~~~~gt~~------------------------k---~lsl~~~rtL-el~ddvL~v~~Spdg-k  521 (888)
T KOG0306|consen  471 TGSADKTVKFWDFKLVVSVPGTQK------------------------K---VLSLKHTRTL-ELEDDVLCVSVSPDG-K  521 (888)
T ss_pred             EecCCcEEEEEeEEEEeccCcccc------------------------e---eeeeccceEE-eccccEEEEEEcCCC-c
Confidence            999999999999863211000000                        0   0000111222 235689999999999 8


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      +|+.+--|.+|+||-+.+-+  ....+.+|.-+|.|+..+| ++.+++|||.|..|++|-+.-      |.+..++-+|.
T Consensus       522 ~LaVsLLdnTVkVyflDtlK--FflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdF------GDCHKS~fAHd  592 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLK--FFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDF------GDCHKSFFAHD  592 (888)
T ss_pred             EEEEEeccCeEEEEEeccee--eeeeecccccceeEEeccC-CcCeEEeccCCCceEEecccc------chhhhhhhccc
Confidence            99999999999999999887  6677889999999999999 999999999999999999998      88999999999


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      ..|.++.|-|... +|.++|.|+.|+-||-.+.               ..+..+.+|...|++++.+|+|.+++      
T Consensus       593 DSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~kF---------------e~iq~L~~H~~ev~cLav~~~G~~vv------  650 (888)
T KOG0306|consen  593 DSVMSVQFLPKTH-LFFTCGKDGKVKQWDGEKF---------------EEIQKLDGHHSEVWCLAVSPNGSFVV------  650 (888)
T ss_pred             CceeEEEEcccce-eEEEecCcceEEeechhhh---------------hhheeeccchheeeeeEEcCCCCeEE------
Confidence            9999999999766 5669999999999998875               56777899999999999999998876      


Q ss_pred             CCCCCCCCeEEEeecCCC
Q 010997          453 CDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~  470 (496)
                        |+|.|.+|++|...+.
T Consensus       651 --s~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  651 --SSSHDKSIRLWERTDE  666 (888)
T ss_pred             --eccCCceeEeeeccCc
Confidence              6677799999998763

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-29  Score=211.00  Aligned_cols=258  Identities=21%  Similarity=0.325  Sum_probs=204.1

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEEec
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGG  215 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~sg~  215 (496)
                      .|.+.|..+...= -++.|||++.|++|+||.+++..         +.+++.+|.||.+ +|+-++|..  .|.+||||+
T Consensus         9 ~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~---------~s~ll~~L~Gh~G-PVwqv~wahPk~G~iLAScs   77 (299)
T KOG1332|consen    9 QHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNG---------QSKLLAELTGHSG-PVWKVAWAHPKFGTILASCS   77 (299)
T ss_pred             hhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCC---------CceeeeEecCCCC-CeeEEeecccccCcEeeEee
Confidence            6888888776544 78899999999999999998872         2367889999998 899999975  599999999


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-CceE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEF  294 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l  294 (496)
                      .||.|.||.-+++.-                                      .....+..|...|++++|.|.+ +-+|
T Consensus        78 YDgkVIiWke~~g~w--------------------------------------~k~~e~~~h~~SVNsV~wapheygl~L  119 (299)
T KOG1332|consen   78 YDGKVIIWKEENGRW--------------------------------------TKAYEHAAHSASVNSVAWAPHEYGLLL  119 (299)
T ss_pred             cCceEEEEecCCCch--------------------------------------hhhhhhhhhcccceeecccccccceEE
Confidence            999999999876522                                      2224567899999999999865 2478


Q ss_pred             EEEcCCCeEEEEEccCC-CccceeeeccCCCCeEEEEecCCC--C-----------cEEEEEcCCCcEEEEeCCCCCCCC
Q 010997          295 CSVGDDSCLILWDARVG-TSPVIKVEKAHDADLHCVDWNPLD--D-----------NLILTGSADNSVRMFDRRNLTSNG  360 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~i~~sp~~--~-----------~~l~sgs~dg~i~iwd~~~~~~~~  360 (496)
                      ++++.||.|.|.+.+.. ..........|.-.|++++|.|..  +           ..|++|+.|..|+||+..+..   
T Consensus       120 acasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---  196 (299)
T KOG1332|consen  120 ACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---  196 (299)
T ss_pred             EEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc---
Confidence            89999999999999876 333445567899999999999831  2           469999999999999998732   


Q ss_pred             CCCCceEeccCCCCEEEEEEcCCC---CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE
Q 010997          361 VGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  437 (496)
Q Consensus       361 ~~~~~~~~~~h~~~i~~l~~sp~~---~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  437 (496)
                       ...-.++.+|.+-|..++|.|.-   ..-+|++++||.|.||..+...++         ....++   ......+..+.
T Consensus       197 -w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~---------wk~tll---~~f~~~~w~vS  263 (299)
T KOG1332|consen  197 -WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP---------WKKTLL---EEFPDVVWRVS  263 (299)
T ss_pred             -hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc---------cccccc---ccCCcceEEEE
Confidence             45556689999999999999964   335799999999999998743221         112222   23567899999


Q ss_pred             ecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          438 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       438 ~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      |+..|..|.++        +.|+.|.+|.-+
T Consensus       264 WS~sGn~LaVs--------~GdNkvtlwke~  286 (299)
T KOG1332|consen  264 WSLSGNILAVS--------GGDNKVTLWKEN  286 (299)
T ss_pred             EeccccEEEEe--------cCCcEEEEEEeC
Confidence            99998876644        346899999876

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=9e-29  Score=242.37  Aligned_cols=245  Identities=20%  Similarity=0.385  Sum_probs=206.9

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ...+|.+.|.++++.. .+.+|++|+.|.+++|||..++            .+..++.||.+ .|.++..  ...++++|
T Consensus       244 ~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg------------~C~~~l~gh~s-tv~~~~~--~~~~~~sg  307 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTG------------ECTHSLQGHTS-SVRCLTI--DPFLLVSG  307 (537)
T ss_pred             eccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCC------------cEEEEecCCCc-eEEEEEc--cCceEeec
Confidence            3789999999999976 7889999999999999999998            78889999998 6777776  45678899


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.|.+|++|+++++..                                        +..+.+|.++|.++..+  + .++
T Consensus       308 s~D~tVkVW~v~n~~~----------------------------------------l~l~~~h~~~V~~v~~~--~-~~l  344 (537)
T KOG0274|consen  308 SRDNTVKVWDVTNGAC----------------------------------------LNLLRGHTGPVNCVQLD--E-PLL  344 (537)
T ss_pred             cCCceEEEEeccCcce----------------------------------------EEEeccccccEEEEEec--C-CEE
Confidence            9999999999985433                                        46677799999999998  3 689


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC-CCceEeccCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG-SPINKFEGHSA  373 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~-~~~~~~~~h~~  373 (496)
                      ++|+.|++|++||+++.+  ++..+.+|...|.++.+.+ . ..+++|+.|+.|++||+++      . +++.++.+|..
T Consensus       345 vsgs~d~~v~VW~~~~~~--cl~sl~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~------~~~c~~tl~~h~~  414 (537)
T KOG0274|consen  345 VSGSYDGTVKVWDPRTGK--CLKSLSGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRT------KRKCIHTLQGHTS  414 (537)
T ss_pred             EEEecCceEEEEEhhhce--eeeeecCCcceEEEEEecC-c-ceEEeeeeccceEeecCCc------hhhhhhhhcCCcc
Confidence            999999999999999887  8889999999999999875 3 9999999999999999999      6 79999999999


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecCCCCcEEEEecCC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      -+..+.+..  . +|++++.|+.|++||....               +++..+.+ |...|..+++.  ... ++++   
T Consensus       415 ~v~~l~~~~--~-~Lvs~~aD~~Ik~WD~~~~---------------~~~~~~~~~~~~~v~~l~~~--~~~-il~s---  470 (537)
T KOG0274|consen  415 LVSSLLLRD--N-FLVSSSADGTIKLWDAEEG---------------ECLRTLEGRHVGGVSALALG--KEE-ILCS---  470 (537)
T ss_pred             ccccccccc--c-eeEeccccccEEEeecccC---------------ceeeeeccCCcccEEEeecC--cce-EEEE---
Confidence            998877753  3 5679999999999999885               45556666 67889888886  233 4433   


Q ss_pred             CCCCCCCCeEEEeecCCCCcCCchHHHHHH
Q 010997          453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  482 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l  482 (496)
                          +.||++++||++      .+++...+
T Consensus       471 ----~~~~~~~l~dl~------~~~~~~~l  490 (537)
T KOG0274|consen  471 ----SDDGSVKLWDLR------SGTLIRTL  490 (537)
T ss_pred             ----ecCCeeEEEecc------cCchhhhh
Confidence                345999999999      56666655

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.4e-29  Score=212.61  Aligned_cols=266  Identities=18%  Similarity=0.292  Sum_probs=206.4

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      -.+.|.+|+|+|+...++++++.||+||+|+++...         ...+ .....|.+ +|.+++|+.+|..+++|+.|+
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g---------~~~~-ka~~~~~~-PvL~v~WsddgskVf~g~~Dk   94 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG---------QLVP-KAQQSHDG-PVLDVCWSDDGSKVFSGGCDK   94 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCC---------cccc-hhhhccCC-CeEEEEEccCCceEEeeccCC
Confidence            346799999999888899999999999999998741         0111 23455666 799999999999999999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC-ceEEEE
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSV  297 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~  297 (496)
                      .+++||+.+++.                                         ..+..|.++|.++.|-+... ..|+||
T Consensus        95 ~~k~wDL~S~Q~-----------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TG  133 (347)
T KOG0647|consen   95 QAKLWDLASGQV-----------------------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTG  133 (347)
T ss_pred             ceEEEEccCCCe-----------------------------------------eeeeecccceeEEEEecCCCcceeEec
Confidence            999999987643                                         56778999999999976541 378999


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEE
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVL  376 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~  376 (496)
                      |.|++|+.||+|...  .+.++ ...+.++++..   -..+++++..+..|.+|++++..     .....+ ..-+-.+.
T Consensus       134 SWDKTlKfWD~R~~~--pv~t~-~LPeRvYa~Dv---~~pm~vVata~r~i~vynL~n~~-----te~k~~~SpLk~Q~R  202 (347)
T KOG0647|consen  134 SWDKTLKFWDTRSSN--PVATL-QLPERVYAADV---LYPMAVVATAERHIAVYNLENPP-----TEFKRIESPLKWQTR  202 (347)
T ss_pred             ccccceeecccCCCC--eeeee-eccceeeehhc---cCceeEEEecCCcEEEEEcCCCc-----chhhhhcCcccceee
Confidence            999999999999876  34443 45677888776   35688889999999999998732     111111 12344688


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC---------CcceEEecCCCCcEEE
Q 010997          377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD---------KVVDFHWNASDPWTVV  447 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~V~~~~~~p~~~~l~~  447 (496)
                      +|+..++... +|.|+-+|++-|..+.....             ..-|.+..|+.         .|++++|+|....++ 
T Consensus       203 ~va~f~d~~~-~alGsiEGrv~iq~id~~~~-------------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlv-  267 (347)
T KOG0647|consen  203 CVACFQDKDG-FALGSIEGRVAIQYIDDPNP-------------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLV-  267 (347)
T ss_pred             EEEEEecCCc-eEeeeecceEEEEecCCCCc-------------cCceeEEEeccCCCCCCceEEecceEeecccceEE-
Confidence            9999998885 57999999999999987421             23344444542         578899999776655 


Q ss_pred             EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                             |.|.||++.+||-.      ....+.+.+.|..+|++++|+
T Consensus       268 -------TaGsDGtf~FWDkd------ar~kLk~s~~~~qpItcc~fn  302 (347)
T KOG0647|consen  268 -------TAGSDGTFSFWDKD------ARTKLKTSETHPQPITCCSFN  302 (347)
T ss_pred             -------EecCCceEEEecch------hhhhhhccCcCCCccceeEec
Confidence                   66667999999998      677888889999999999986

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.7e-29  Score=208.67  Aligned_cols=268  Identities=17%  Similarity=0.327  Sum_probs=217.7

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVL  212 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~  212 (496)
                      ..+.+|.+.|.+++|.. +|..||+|+.|+++.||+++....          .......+|++ .|-.++|+|. ...|+
T Consensus        14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~----------~~~~~~~gh~~-svdql~w~~~~~d~~a   81 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRF----------RKELVYRGHTD-SVDQLCWDPKHPDLFA   81 (313)
T ss_pred             HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhh----------hhhhcccCCCc-chhhheeCCCCCcceE
Confidence            45568999999999999 999999999999999999988721          23346788987 5788999886 55899


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +++.|++|++||++.+++.                                        .......+ =.-+.|+|+| .
T Consensus        82 tas~dk~ir~wd~r~~k~~----------------------------------------~~i~~~~e-ni~i~wsp~g-~  119 (313)
T KOG1407|consen   82 TASGDKTIRIWDIRSGKCT----------------------------------------ARIETKGE-NINITWSPDG-E  119 (313)
T ss_pred             EecCCceEEEEEeccCcEE----------------------------------------EEeeccCc-ceEEEEcCCC-C
Confidence            9999999999999876543                                        22222222 2357899999 7


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      +++.++.|..|.+.|.|+.+  ... .......++-++|+- ++++|+.-...|+|.|.....      .+++.+++.|.
T Consensus       120 ~~~~~~kdD~it~id~r~~~--~~~-~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsyps------Lkpv~si~AH~  189 (313)
T KOG1407|consen  120 YIAVGNKDDRITFIDARTYK--IVN-EEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPS------LKPVQSIKAHP  189 (313)
T ss_pred             EEEEecCcccEEEEEecccc--eee-hhcccceeeeeeecC-CCCEEEEecCCceEEEEeccc------cccccccccCC
Confidence            89999999999999999877  232 235567789999996 777777777889999999887      68999999999


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      ....|+.|+|+|++ ||+|+.|-.+.+||+...               .+...+..+.=+|..++|+.+|++ +||+|+|
T Consensus       190 snCicI~f~p~Gry-fA~GsADAlvSLWD~~EL---------------iC~R~isRldwpVRTlSFS~dg~~-lASaSED  252 (313)
T KOG1407|consen  190 SNCICIEFDPDGRY-FATGSADALVSLWDVDEL---------------ICERCISRLDWPVRTLSFSHDGRM-LASASED  252 (313)
T ss_pred             cceEEEEECCCCce-EeeccccceeeccChhHh---------------hhheeeccccCceEEEEeccCcce-eeccCcc
Confidence            99999999999997 799999999999999875               455566777889999999998765 6655555


Q ss_pred             CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                             ..|-|=++.      +|..+.+++ +.++..+|||||
T Consensus       253 -------h~IDIA~ve------tGd~~~eI~-~~~~t~tVAWHP  282 (313)
T KOG1407|consen  253 -------HFIDIAEVE------TGDRVWEIP-CEGPTFTVAWHP  282 (313)
T ss_pred             -------ceEEeEecc------cCCeEEEee-ccCCceeEEecC
Confidence                   778777776      677777766 788999999998

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.3e-29  Score=205.31  Aligned_cols=220  Identities=23%  Similarity=0.352  Sum_probs=193.0

Q ss_pred             CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997          186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  265 (496)
Q Consensus       186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (496)
                      +....+..|++ +|.++.|+-+|+|.++|+.|++|++|+...+.                                    
T Consensus         8 kr~~~l~~~qg-aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~------------------------------------   50 (307)
T KOG0316|consen    8 KRLSILDCAQG-AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA------------------------------------   50 (307)
T ss_pred             hhceeeccccc-ceEEEEEccCCCEEEEcCCCceEEeecccccc------------------------------------
Confidence            34557788887 79999999999999999999999999986543                                    


Q ss_pred             CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997          266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  345 (496)
Q Consensus       266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d  345 (496)
                          .++++.+|...|.+++.+.++ ..|++|+.|..|.+||+.+++  ..+.+.+|...|+.+.|+. +...+++|+.|
T Consensus        51 ----liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD  122 (307)
T KOG0316|consen   51 ----LIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGK--VDRRFRGHLAQVNTVRFNE-ESSVVASGSFD  122 (307)
T ss_pred             ----eeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCe--eeeecccccceeeEEEecC-cceEEEecccc
Confidence                358899999999999999988 689999999999999999999  7888999999999999999 89999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  425 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  425 (496)
                      ..+++||.|+..    .+|++.+......|.++..+..   .+++|+.||+++.||++.+               .+...
T Consensus       123 ~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~h---eIvaGS~DGtvRtydiR~G---------------~l~sD  180 (307)
T KOG0316|consen  123 SSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAEH---EIVAGSVDGTVRTYDIRKG---------------TLSSD  180 (307)
T ss_pred             ceeEEEEcccCC----CCccchhhhhcCceeEEEeccc---EEEeeccCCcEEEEEeecc---------------eeehh
Confidence            999999999866    6889999988999999999754   4569999999999999985               33333


Q ss_pred             ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccce
Q 010997          426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH  488 (496)
Q Consensus       426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~  488 (496)
                      ..|  .+|++++|++++...++        ++.|++|++-|-.      +++++++.++|.+.
T Consensus       181 y~g--~pit~vs~s~d~nc~La--------~~l~stlrLlDk~------tGklL~sYkGhkn~  227 (307)
T KOG0316|consen  181 YFG--HPITSVSFSKDGNCSLA--------SSLDSTLRLLDKE------TGKLLKSYKGHKNM  227 (307)
T ss_pred             hcC--CcceeEEecCCCCEEEE--------eeccceeeecccc------hhHHHHHhcccccc
Confidence            343  48999999999998884        4557999999998      89999999999875

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=5.8e-28  Score=236.53  Aligned_cols=235  Identities=17%  Similarity=0.309  Sum_probs=179.9

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEe
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSG  214 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg  214 (496)
                      +.+|.+.|++++|+|.++++||+|+.||+|+|||+.......     ....++..+.+|.. .|.+++|+|++ ++|++|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-----~~~~~l~~L~gH~~-~V~~l~f~P~~~~iLaSg  144 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-----NISDPIVHLQGHTK-KVGIVSFHPSAMNVLASA  144 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-----ccCcceEEecCCCC-cEEEEEeCcCCCCEEEEE
Confidence            569999999999999778899999999999999997652111     11246678899987 69999999985 689999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.|++|+|||++++.                                        .+..+.+|...|.+++|+|++ .+|
T Consensus       145 s~DgtVrIWDl~tg~----------------------------------------~~~~l~~h~~~V~sla~spdG-~lL  183 (493)
T PTZ00421        145 GADMVVNVWDVERGK----------------------------------------AVEVIKCHSDQITSLEWNLDG-SLL  183 (493)
T ss_pred             eCCCEEEEEECCCCe----------------------------------------EEEEEcCCCCceEEEEEECCC-CEE
Confidence            999999999997542                                        235677899999999999998 799


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCC-eEEEEecCCCCcEEEEEc----CCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNPLDDNLILTGS----ADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~i~~sp~~~~~l~sgs----~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      ++++.|++|++||+++++  .+..+..|... +..+.|.+ ++..+++++    .|+.|++||+++..     .++....
T Consensus       184 atgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~-----~p~~~~~  255 (493)
T PTZ00421        184 CTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMA-----SPYSTVD  255 (493)
T ss_pred             EEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCC-----CceeEec
Confidence            999999999999999887  55666678754 45778888 666666543    47999999999743     3444444


Q ss_pred             cC-CCCEEEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-ecCCCCCcceEEecCC
Q 010997          370 GH-SAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHWNAS  441 (496)
Q Consensus       370 ~h-~~~i~~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~~p~  441 (496)
                      .+ ...+....|++++..++ +++ .|+.|++||+...               .+++. ...+..++..++|.|.
T Consensus       256 ~d~~~~~~~~~~d~d~~~L~-lggkgDg~Iriwdl~~~---------------~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        256 LDQSSALFIPFFDEDTNLLY-IGSKGEGNIRCFELMNE---------------RLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             cCCCCceEEEEEcCCCCEEE-EEEeCCCeEEEEEeeCC---------------ceEEEeeccCCCCCcceEeccc
Confidence            33 34566778999998554 555 6999999999874               12222 1234556777888774

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-29  Score=242.39  Aligned_cols=240  Identities=23%  Similarity=0.473  Sum_probs=200.0

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCCCcE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSV  220 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i  220 (496)
                      .+..++|.....++|||++..|.|.+||+....         ..+.+..|..|.. .++++.|++.. .+|+|||.||+|
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~---------rnk~l~~f~EH~R-s~~~ldfh~tep~iliSGSQDg~v  158 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI---------RNKLLTVFNEHER-SANKLDFHSTEPNILISGSQDGTV  158 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccc---------cchhhhHhhhhcc-ceeeeeeccCCccEEEecCCCceE
Confidence            466788887788999999999999999998741         1255667888988 68999999975 489999999999


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  300 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  300 (496)
                      ++||++....                                        ..++.+....|.+|+|+|..++.|+++.+.
T Consensus       159 K~~DlR~~~S----------------------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  159 KCWDLRSKKS----------------------------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             EEEeeecccc----------------------------------------cccccccchhhhceeeccCCCceEEEecCC
Confidence            9999985432                                        245566778999999999888999999999


Q ss_pred             CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEE
Q 010997          301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW  380 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~  380 (496)
                      |.+++||+|.... ....+.+|.++|.|+.|+| ++.+||||+.|+.|+|||+....    ..+++++. -..+|.+|.|
T Consensus       199 G~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~----~~~~~tIn-Tiapv~rVkW  271 (839)
T KOG0269|consen  199 GYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSR----AKPKHTIN-TIAPVGRVKW  271 (839)
T ss_pred             ceEEEeeccCchh-HHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCC----ccceeEEe-ecceeeeeee
Confidence            9999999999874 4556779999999999999 99999999999999999998743    35556665 3678999999


Q ss_pred             cCCCCCEEEEEeC--CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          381 SPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       381 sp~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      -|..++.||+++.  |-.|+|||++..              ..+...+..|...++.++|-..+..++.+++.|
T Consensus       272 RP~~~~hLAtcsmv~dtsV~VWDvrRP--------------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD  331 (839)
T KOG0269|consen  272 RPARSYHLATCSMVVDTSVHVWDVRRP--------------YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKD  331 (839)
T ss_pred             ccCccchhhhhhccccceEEEEeeccc--------------cccceeeeccCccccceeccCCCceeeEeecCc
Confidence            9999999998876  788999999874              234556778999999999988667777766665

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.6e-28  Score=219.21  Aligned_cols=262  Identities=21%  Similarity=0.368  Sum_probs=202.3

Q ss_pred             CCceeEEEecC------CCCcEEEEEeCCCcEEEEeCCCCCCc--cccCCCCC-------CCCceEEecCCCCcceeeee
Q 010997          140 PGEVNRIRELP------QNTKIVATHTDSPDVLIWDVEAQPNR--HAVLGATN-------SRPDLILTGHQDNAEFALAM  204 (496)
Q Consensus       140 ~~~V~~l~~~p------~~~~~lat~~~dg~i~iwd~~~~~~~--~~~~~~~~-------~~~~~~l~~h~~~~v~~l~~  204 (496)
                      +..-.|++|..      .-++++|.|+.|..|.|||+.-....  ...++...       .+......+|++ +|.+|+|
T Consensus       173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~  251 (463)
T KOG0270|consen  173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSW  251 (463)
T ss_pred             cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHh
Confidence            34445666643      24679999999999999998754221  11122100       011122457888 7899999


Q ss_pred             cCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997          205 CPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED  283 (496)
Q Consensus       205 ~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  283 (496)
                      +.. .+.|||||.|.+|++||+.+++.                                        ..++..|.+.|.+
T Consensus       252 n~~~~nVLaSgsaD~TV~lWD~~~g~p----------------------------------------~~s~~~~~k~Vq~  291 (463)
T KOG0270|consen  252 NRNFRNVLASGSADKTVKLWDVDTGKP----------------------------------------KSSITHHGKKVQT  291 (463)
T ss_pred             ccccceeEEecCCCceEEEEEcCCCCc----------------------------------------ceehhhcCCceeE
Confidence            886 45899999999999999986543                                        3667779999999


Q ss_pred             EEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997          284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~  363 (496)
                      +.|+|..+.+|++|+.|++|.+.|.|....  ....-...+.|-.++|+|+....+++++.||+|+-+|+|++     +.
T Consensus       292 l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-----~~  364 (463)
T KOG0270|consen  292 LEWHPYEPSVLLSGSYDGTVALKDCRDPSN--SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-----GK  364 (463)
T ss_pred             EEecCCCceEEEeccccceEEeeeccCccc--cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCC-----CC
Confidence            999999999999999999999999996431  11111346789999999988999999999999999999996     48


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  443 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~  443 (496)
                      ++.+++.|.++|.+|++++.-+.++++++.|+.|++|++....             +.....+.--.+...++++.|+-.
T Consensus       365 ~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-------------~~~v~~~~~~~~rl~c~~~~~~~a  431 (463)
T KOG0270|consen  365 PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-------------PKSVKEHSFKLGRLHCFALDPDVA  431 (463)
T ss_pred             ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC-------------CcccccccccccceeecccCCCcc
Confidence            9999999999999999999999999999999999999998731             122222222234567888999988


Q ss_pred             cEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          444 WTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       444 ~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      +++|       .||..+.++|||+..
T Consensus       432 ~~la-------~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  432 FTLA-------FGGEKAVLRVWDIFT  450 (463)
T ss_pred             eEEE-------ecCccceEEEeeccc
Confidence            8887       555568999999983

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=3.2e-28  Score=219.56  Aligned_cols=227  Identities=22%  Similarity=0.420  Sum_probs=194.9

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCce
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYV  211 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l  211 (496)
                      .+++.+|.++=..+.|+++..-.|++|+.|+.|++||+.......     ....+...+.+|.+ .|..++|++. ..+|
T Consensus       170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~-----~~~~p~~~~~~h~~-~VeDV~~h~~h~~lF  243 (422)
T KOG0264|consen  170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED-----KVVDPKTIFSGHED-VVEDVAWHPLHEDLF  243 (422)
T ss_pred             ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC-----ccccceEEeecCCc-ceehhhccccchhhh
Confidence            457889999889999999888899999999999999998774321     12367788999998 7999999996 4588


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ++++.|+.+.|||+++.                                      ..++.....+|.++|+|++|+|.+.
T Consensus       244 ~sv~dd~~L~iwD~R~~--------------------------------------~~~~~~~~~ah~~~vn~~~fnp~~~  285 (422)
T KOG0264|consen  244 GSVGDDGKLMIWDTRSN--------------------------------------TSKPSHSVKAHSAEVNCVAFNPFNE  285 (422)
T ss_pred             eeecCCCeEEEEEcCCC--------------------------------------CCCCcccccccCCceeEEEeCCCCC
Confidence            99999999999999852                                      1122355678999999999999998


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC--------CCCC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN--------GVGS  363 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~--------~~~~  363 (496)
                      .+|||||.|++|.+||+|+... ....+.+|...|.+|.|+|+....||+++.|+.+.+||+......        +...
T Consensus       286 ~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE  364 (422)
T KOG0264|consen  286 FILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE  364 (422)
T ss_pred             ceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc
Confidence            9999999999999999999886 466778999999999999988999999999999999999875422        1234


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ++..-.||...|..+.|+|+.+++++|.++|+.+.||.+..
T Consensus       365 llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  365 LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            56777899999999999999999999999999999999975

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.7e-29  Score=210.46  Aligned_cols=246  Identities=20%  Similarity=0.326  Sum_probs=202.0

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      +-.+.+|.|+|+...... +....|+++.|-+.+|||.-++            ..+..+. |.. .|.+++|+.|.++|+
T Consensus        52 igtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~tg------------delhsf~-hkh-ivk~~af~~ds~~ll  116 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAVTG------------DELHSFE-HKH-IVKAVAFSQDSNYLL  116 (334)
T ss_pred             EEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhhhh------------hhhhhhh-hhh-eeeeEEecccchhhh
Confidence            346679999999999877 7778899999999999999888            3333443 444 689999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.++.+||+|++....                                       +...+.+|.+.|..+.|+... +
T Consensus       117 tgg~ekllrvfdln~p~A---------------------------------------pp~E~~ghtg~Ir~v~wc~eD-~  156 (334)
T KOG0278|consen  117 TGGQEKLLRVFDLNRPKA---------------------------------------PPKEISGHTGGIRTVLWCHED-K  156 (334)
T ss_pred             ccchHHHhhhhhccCCCC---------------------------------------CchhhcCCCCcceeEEEeccC-c
Confidence            999999999999985322                                       235678999999999999887 6


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      .|++.++|++||+||.+++.  ....+ .....|+++..++ ++.+|.++ ..+.|.+||..+      ..++..++ -.
T Consensus       157 ~iLSSadd~tVRLWD~rTgt--~v~sL-~~~s~VtSlEvs~-dG~ilTia-~gssV~Fwdaks------f~~lKs~k-~P  224 (334)
T KOG0278|consen  157 CILSSADDKTVRLWDHRTGT--EVQSL-EFNSPVTSLEVSQ-DGRILTIA-YGSSVKFWDAKS------FGLLKSYK-MP  224 (334)
T ss_pred             eEEeeccCCceEEEEeccCc--EEEEE-ecCCCCcceeecc-CCCEEEEe-cCceeEEecccc------ccceeecc-Cc
Confidence            78888999999999999998  44544 5678899999999 88887766 456799999998      56666665 46


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-ecCCCCCcceEEecCCCCcEEEEecC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      ..|.+...+|+.. +|++|++|+.++.||..++ +              -+.. ..||-++|.++.|+|+|.. .|    
T Consensus       225 ~nV~SASL~P~k~-~fVaGged~~~~kfDy~Tg-e--------------Ei~~~nkgh~gpVhcVrFSPdGE~-yA----  283 (334)
T KOG0278|consen  225 CNVESASLHPKKE-FFVAGGEDFKVYKFDYNTG-E--------------EIGSYNKGHFGPVHCVRFSPDGEL-YA----  283 (334)
T ss_pred             cccccccccCCCc-eEEecCcceEEEEEeccCC-c--------------eeeecccCCCCceEEEEECCCCce-ee----
Confidence            6799999999986 6889999999999999985 2              2222 4899999999999998874 55    


Q ss_pred             CCCCCCCCCeEEEeecCC
Q 010997          452 DCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~~  469 (496)
                         +|+.||+|+||.+..
T Consensus       284 ---sGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  284 ---SGSEDGTIRLWQTTP  298 (334)
T ss_pred             ---ccCCCceEEEEEecC
Confidence               566669999999873

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=9.7e-29  Score=242.15  Aligned_cols=255  Identities=22%  Similarity=0.403  Sum_probs=219.2

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceE-EecCCCCcceeeeecCCCCceEEecCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      |...+.+..|.   ..++++++.+++|++||..+.            ..+.. +.||.+ .|+++++..-+.+|++|+.|
T Consensus       207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~------------~~i~~~l~GH~g-~V~~l~~~~~~~~lvsgS~D  270 (537)
T KOG0274|consen  207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNG------------YLILTRLVGHFG-GVWGLAFPSGGDKLVSGSTD  270 (537)
T ss_pred             Ccchhhhheee---cCeEEecCCCceeEEeecccc------------eEEEeeccCCCC-CceeEEEecCCCEEEEEecC
Confidence            56778888886   457999999999999999888            55556 999998 69999998778899999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      .++++||..++.+                                        ...+.+|...|.++...+   ..+++|
T Consensus       271 ~t~rvWd~~sg~C----------------------------------------~~~l~gh~stv~~~~~~~---~~~~sg  307 (537)
T KOG0274|consen  271 KTERVWDCSTGEC----------------------------------------THSLQGHTSSVRCLTIDP---FLLVSG  307 (537)
T ss_pred             CcEEeEecCCCcE----------------------------------------EEEecCCCceEEEEEccC---ceEeec
Confidence            9999999887655                                        478889999999998864   568899


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  377 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~  377 (496)
                      +.|.+|++|++.++.  .+..+.+|..+|+++..+   +.++++|+.||+|++||+++      +++++++.+|...|.+
T Consensus       308 s~D~tVkVW~v~n~~--~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~------~~cl~sl~gH~~~V~s  376 (537)
T KOG0274|consen  308 SRDNTVKVWDVTNGA--CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRT------GKCLKSLSGHTGRVYS  376 (537)
T ss_pred             cCCceEEEEeccCcc--eEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhh------ceeeeeecCCcceEEE
Confidence            999999999999888  777777799999999995   78999999999999999998      8999999999999999


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  457 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg  457 (496)
                      +.+.+. . .+.+|+.|+.|++||+....              .++..+.+|...|..+.+.  +..++        +++
T Consensus       377 l~~~~~-~-~~~Sgs~D~~IkvWdl~~~~--------------~c~~tl~~h~~~v~~l~~~--~~~Lv--------s~~  430 (537)
T KOG0274|consen  377 LIVDSE-N-RLLSGSLDTTIKVWDLRTKR--------------KCIHTLQGHTSLVSSLLLR--DNFLV--------SSS  430 (537)
T ss_pred             EEecCc-c-eEEeeeeccceEeecCCchh--------------hhhhhhcCCcccccccccc--cceeE--------ecc
Confidence            999875 4 45699999999999999841              4566788999988777765  44444        666


Q ss_pred             CCCeEEEeecCCCCcCCchHHHHHHHh-ccceEEEeccC
Q 010997          458 GGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSK  495 (496)
Q Consensus       458 ~Dg~i~iw~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~s  495 (496)
                      .||+|++||..      +++++.++++ |.+.|.++++.
T Consensus       431 aD~~Ik~WD~~------~~~~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  431 ADGTIKLWDAE------EGECLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             ccccEEEeecc------cCceeeeeccCCcccEEEeecC
Confidence            67999999999      7899999998 67889888763

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.7e-28  Score=241.95  Aligned_cols=281  Identities=21%  Similarity=0.357  Sum_probs=213.7

Q ss_pred             CCceeEEEecCCCCcEEEEEe--CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          140 PGEVNRIRELPQNTKIVATHT--DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      ...|.+|..+| ++..+|||+  .||.++||+.+.-..........-.+.+.....|.+ .|.|+.|+|||.+||+|+.|
T Consensus        13 ~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   13 EKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-SVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             CeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-ceeEEEECCCCCeEeeccCc
Confidence            45689999999 999999999  899999999876432221111112356677888988 79999999999999999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      +.|.||..... ...     ...                .......+....+.+..+.+|...|.+++|+|++ .+|+++
T Consensus        91 ~~v~iW~~~~~-~~~-----~~f----------------gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~  147 (942)
T KOG0973|consen   91 RLVMIWERAEI-GSG-----TVF----------------GSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSV  147 (942)
T ss_pred             ceEEEeeeccc-CCc-----ccc----------------cccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEe
Confidence            99999998631 000     000                0001122445667778999999999999999988 899999


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC----------C--------
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS----------N--------  359 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~----------~--------  359 (496)
                      +.|++|.|||.++..  .+..+.+|.+.|..+.|+| -|+|||+-+.|++|++|++....-          .        
T Consensus       148 s~DnsViiwn~~tF~--~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R  224 (942)
T KOG0973|consen  148 SLDNSVIIWNAKTFE--LLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR  224 (942)
T ss_pred             cccceEEEEccccce--eeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence            999999999999986  7888899999999999999 999999999999999999654110          0        


Q ss_pred             ----------------------------CCCCCceEeccCCCCEEEEEEcCC--------C-------CC-EEEEEeCCC
Q 010997          360 ----------------------------GVGSPINKFEGHSAAVLCVQWSPD--------K-------SS-VFGSSAEDG  395 (496)
Q Consensus       360 ----------------------------~~~~~~~~~~~h~~~i~~l~~sp~--------~-------~~-llas~~~dg  395 (496)
                                                  ...+.-..|-+|.+++.++.|+|.        |       .| ++|+|+.|+
T Consensus       225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr  304 (942)
T KOG0973|consen  225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR  304 (942)
T ss_pred             cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence                                        011122334589999999999982        1       11 889999999


Q ss_pred             cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          396 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       396 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      .|.||.....              ..++..+.-....|.+++|+|+|-.|+ .||.       ||+|.+..+.+.
T Consensus       305 SlSVW~T~~~--------------RPl~vi~~lf~~SI~DmsWspdG~~Lf-acS~-------DGtV~~i~Fee~  357 (942)
T KOG0973|consen  305 SLSVWNTALP--------------RPLFVIHNLFNKSIVDMSWSPDGFSLF-ACSL-------DGTVALIHFEEK  357 (942)
T ss_pred             cEEEEecCCC--------------CchhhhhhhhcCceeeeeEcCCCCeEE-EEec-------CCeEEEEEcchH
Confidence            9999998653              122223333456899999999886655 4444       599999999854

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=9.3e-30  Score=226.31  Aligned_cols=270  Identities=20%  Similarity=0.282  Sum_probs=218.0

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      ....-.|.++|+.+.|.+ +...|++|+.|..|++|++....          .....+|.|-.+ .|+.+.|.+++.+++
T Consensus       168 ~~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k----------~~~~~tLaGs~g-~it~~d~d~~~~~~i  235 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEK----------SELISTLAGSLG-NITSIDFDSDNKHVI  235 (459)
T ss_pred             hhhhhccccccceeEEcc-Ccchhhhcchhhhhhhhhcccch----------hhhhhhhhccCC-CcceeeecCCCceEE
Confidence            345567999999999999 77799999999999999998762          235567777766 699999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +++.|+.+++|++.....                                        ..++.+|++.|+++.|.... .
T Consensus       236 Aas~d~~~r~Wnvd~~r~----------------------------------------~~TLsGHtdkVt~ak~~~~~-~  274 (459)
T KOG0288|consen  236 AASNDKNLRLWNVDSLRL----------------------------------------RHTLSGHTDKVTAAKFKLSH-S  274 (459)
T ss_pred             eecCCCceeeeeccchhh----------------------------------------hhhhcccccceeeehhhccc-c
Confidence            999999999999975433                                        36788999999999998877 4


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      .+++|+.|.+|++||+....  +..+. --.+.++.|..+   ...+++|..|+.|++||++.      ..++.+...+.
T Consensus       275 ~vVsgs~DRtiK~WDl~k~~--C~kt~-l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs------~~~~~sv~~gg  342 (459)
T KOG0288|consen  275 RVVSGSADRTIKLWDLQKAY--CSKTV-LPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRS------ADKTRSVPLGG  342 (459)
T ss_pred             ceeeccccchhhhhhhhhhh--eeccc-cccccccceEec---ceeeeecccccceEEEeccC------CceeeEeecCc
Confidence            59999999999999999866  44433 234556667664   47789999999999999999      67888887655


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC--CCCcceEEecCCCCcEEEEec
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--RDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~~~~~p~~~~l~~s~s  450 (496)
                       .|+++..++++..++ +++.|..+.+.|++...-.             ..+...+.  ...++.+.|||++.|++    
T Consensus       343 -~vtSl~ls~~g~~lL-sssRDdtl~viDlRt~eI~-------------~~~sA~g~k~asDwtrvvfSpd~~Yva----  403 (459)
T KOG0288|consen  343 -RVTSLDLSMDGLELL-SSSRDDTLKVIDLRTKEIR-------------QTFSAEGFKCASDWTRVVFSPDGSYVA----  403 (459)
T ss_pred             -ceeeEeeccCCeEEe-eecCCCceeeeecccccEE-------------EEeeccccccccccceeEECCCCceee----
Confidence             999999999999876 6688999999999985221             12221111  12488999999999877    


Q ss_pred             CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccce--EEEeccCC
Q 010997          451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH--VISCTSKP  496 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~--v~~~~~sP  496 (496)
                          +||.||.|+||++.      ++++...+......  |++++|+|
T Consensus       404 ----AGS~dgsv~iW~v~------tgKlE~~l~~s~s~~aI~s~~W~~  441 (459)
T KOG0288|consen  404 ----AGSADGSVYIWSVF------TGKLEKVLSLSTSNAAITSLSWNP  441 (459)
T ss_pred             ----eccCCCcEEEEEcc------CceEEEEeccCCCCcceEEEEEcC
Confidence                78889999999999      67777777665554  99999987

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=7.9e-28  Score=210.96  Aligned_cols=305  Identities=16%  Similarity=0.190  Sum_probs=226.3

Q ss_pred             CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997           94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ  173 (496)
Q Consensus        94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~  173 (496)
                      +|+.++.-.+|+...-                   +  ......+|+..|.++.|+. ++.+||||..+|.|+||...++
T Consensus        81 TGGgDD~AflW~~~~g-------------------e--~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   81 TGGGDDLAFLWDISTG-------------------E--FAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             ecCCCceEEEEEccCC-------------------c--ceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccC
Confidence            5677888888875420                   0  2446679999999999999 9999999999999999999998


Q ss_pred             CCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCc--eecc
Q 010997          174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGS--IIKQ  251 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~  251 (496)
                                  .....+...-. .+.=|.|+|.+..|+.|+.||.|.+|.+.+................+...  --+.
T Consensus       139 ------------~~~~~~~~e~~-dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~  205 (399)
T KOG0296|consen  139 ------------GEQWKLDQEVE-DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRI  205 (399)
T ss_pred             ------------ceEEEeecccC-ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceE
Confidence                        33334433333 46678999999999999999999999998742222222211111111111  0111


Q ss_pred             CCCCCCCCCCCCCCCCcCCeeeeecC-CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec--------cC
Q 010997          252 SPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--------AH  322 (496)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~  322 (496)
                      .....++.+.+|+..+..++..+..- .....++.++..+ ..+++|+.++.+++-+..+++  .+....        .+
T Consensus       206 ~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgK--Vv~~~n~~~~~l~~~~  282 (399)
T KOG0296|consen  206 LTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGK--VVNCNNGTVPELKPSQ  282 (399)
T ss_pred             EEEecCceEEEEecCCCceeEEecccccCcCCcccccccc-ceeEeccCCccEEEEccccce--EEEecCCCCccccccc
Confidence            11245788999999999998887632 3456778888777 688999999999988877766  333222        45


Q ss_pred             CCCeEEEEecCC--CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 010997          323 DADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW  400 (496)
Q Consensus       323 ~~~v~~i~~sp~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iw  400 (496)
                      ...+.|+.+.|.  .-.+.|+|+.||+|.|||+..       ..++..-.|..+|+.+.|-+ ..+|+ +++.||.|+.|
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-------~~~R~~c~he~~V~~l~w~~-t~~l~-t~c~~g~v~~w  353 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA-------STLRHICEHEDGVTKLKWLN-TDYLL-TACANGKVRQW  353 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEeccc-------chhheeccCCCceEEEEEcC-cchhe-eeccCceEEee
Confidence            666677776663  346789999999999999998       34445556999999999999 56555 88889999999


Q ss_pred             ECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          401 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       401 d~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      |.+++               ++++...||...|.+++.+|+.+. ++++|+       |++.+||++.
T Consensus       354 DaRtG---------------~l~~~y~GH~~~Il~f~ls~~~~~-vvT~s~-------D~~a~VF~v~  398 (399)
T KOG0296|consen  354 DARTG---------------QLKFTYTGHQMGILDFALSPQKRL-VVTVSD-------DNTALVFEVP  398 (399)
T ss_pred             ecccc---------------ceEEEEecCchheeEEEEcCCCcE-EEEecC-------CCeEEEEecC
Confidence            99996               789999999999999999997664 555555       5999999875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.1e-28  Score=228.94  Aligned_cols=258  Identities=18%  Similarity=0.350  Sum_probs=212.5

Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEE
Q 010997          144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW  223 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iw  223 (496)
                      +-+.|+.  .+.||.|.. ..|++|+..++            ........+. ..|+++.|+++|.+|+.|..+|.|.||
T Consensus       181 nlldWss--~n~laValg-~~vylW~~~s~------------~v~~l~~~~~-~~vtSv~ws~~G~~LavG~~~g~v~iw  244 (484)
T KOG0305|consen  181 NLLDWSS--ANVLAVALG-QSVYLWSASSG------------SVTELCSFGE-ELVTSVKWSPDGSHLAVGTSDGTVQIW  244 (484)
T ss_pred             hHhhccc--CCeEEEEec-ceEEEEecCCC------------ceEEeEecCC-CceEEEEECCCCCEEEEeecCCeEEEE
Confidence            4456664  346777654 48999999887            2223333333 479999999999999999999999999


Q ss_pred             ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEEEEcCCCe
Q 010997          224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDSC  302 (496)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~  302 (496)
                      |......                                        +..+.+ |...|.+++|.   ...+.+|+.|+.
T Consensus       245 D~~~~k~----------------------------------------~~~~~~~h~~rvg~laW~---~~~lssGsr~~~  281 (484)
T KOG0305|consen  245 DVKEQKK----------------------------------------TRTLRGSHASRVGSLAWN---SSVLSSGSRDGK  281 (484)
T ss_pred             ehhhccc----------------------------------------cccccCCcCceeEEEecc---CceEEEecCCCc
Confidence            9875432                                        244455 99999999998   267999999999


Q ss_pred             EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC
Q 010997          303 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP  382 (496)
Q Consensus       303 i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp  382 (496)
                      |..+|+|..+.... .+.+|...|..++|++ ++.+||+|+.|+.+.|||...      ..++..+..|.++|..++|+|
T Consensus       282 I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~------~~p~~~~~~H~aAVKA~awcP  353 (484)
T KOG0305|consen  282 ILNHDVRISQHVVS-TLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLS------PEPKFTFTEHTAAVKALAWCP  353 (484)
T ss_pred             EEEEEEecchhhhh-hhhcccceeeeeEECC-CCCeeccCCCccceEeccCCC------ccccEEEeccceeeeEeeeCC
Confidence            99999999874333 5789999999999999 999999999999999999977      688999999999999999999


Q ss_pred             CCCCEEEEEeC--CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCC
Q 010997          383 DKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG  460 (496)
Q Consensus       383 ~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg  460 (496)
                      -...|||+|+.  |+.|++||...+.               .+. ...-...|..+.|++...-++.+      .|-.++
T Consensus       354 ~q~~lLAsGGGs~D~~i~fwn~~~g~---------------~i~-~vdtgsQVcsL~Wsk~~kEi~st------hG~s~n  411 (484)
T KOG0305|consen  354 WQSGLLATGGGSADRCIKFWNTNTGA---------------RID-SVDTGSQVCSLIWSKKYKELLST------HGYSEN  411 (484)
T ss_pred             CccCceEEcCCCcccEEEEEEcCCCc---------------Eec-ccccCCceeeEEEcCCCCEEEEe------cCCCCC
Confidence            98889999875  9999999999752               121 12235679999999988777766      445578


Q ss_pred             eEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          461 TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       461 ~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .|.||+..      +...+..+.+|+.+|..+++||
T Consensus       412 ~i~lw~~p------s~~~~~~l~gH~~RVl~la~SP  441 (484)
T KOG0305|consen  412 QITLWKYP------SMKLVAELLGHTSRVLYLALSP  441 (484)
T ss_pred             cEEEEecc------ccceeeeecCCcceeEEEEECC
Confidence            99999999      6788999999999999999998

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-28  Score=235.54  Aligned_cols=277  Identities=14%  Similarity=0.269  Sum_probs=212.9

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC--CcceeeeecC-CCCceEEecC
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCP-TEPYVLSGGK  216 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~--~~v~~l~~~p-~~~~l~sg~~  216 (496)
                      .+..++|...+ +-..|+.++.. .+.||.+.......        ++...+.+-..  -.+..+.|+. +.++||+++.
T Consensus        39 k~~~nAIs~nr-~~~qiv~AGrs-~lklyai~~~~~~~--------~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~  108 (839)
T KOG0269|consen   39 KAKANAISVNR-DINQIVVAGRS-LLKLYAINPNDFSE--------KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST  108 (839)
T ss_pred             ccccceEeecC-CcceeEEeccc-ceeeEeeCcccCCc--------ceeeecccccceeeehhhcccccchhhhheeecC
Confidence            34566777777 55556666554 78888877653221        11111111111  0234667874 3679999999


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      .|.|.+||+....                                     ....+..|..|...++++.|++..+++|++
T Consensus       109 nG~i~vWdlnk~~-------------------------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliS  151 (839)
T KOG0269|consen  109 NGVISVWDLNKSI-------------------------------------RNKLLTVFNEHERSANKLDFHSTEPNILIS  151 (839)
T ss_pred             CCcEEEEecCccc-------------------------------------cchhhhHhhhhccceeeeeeccCCccEEEe
Confidence            9999999997421                                     122336788999999999999999999999


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL  376 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~  376 (496)
                      |+.||+|++||+|..+  ...++......|..|+|+|..++.|+++...|.+.+||+|.+.     ++...+.+|.++|.
T Consensus       152 GSQDg~vK~~DlR~~~--S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-----r~~~k~~AH~GpV~  224 (839)
T KOG0269|consen  152 GSQDGTVKCWDLRSKK--SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-----RCEKKLTAHNGPVL  224 (839)
T ss_pred             cCCCceEEEEeeeccc--ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-----hHHHHhhcccCceE
Confidence            9999999999999988  4555667889999999999889999999999999999999964     78889999999999


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997          377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  456 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg  456 (496)
                      ++.|+|++. .|||||.|+.|+|||+.....          .+...+.    -..+|..|.|-|..++.+|+|+     -
T Consensus       225 c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~----------~~~~tIn----Tiapv~rVkWRP~~~~hLAtcs-----m  284 (839)
T KOG0269|consen  225 CLNWHPNRE-WLATGGRDKMVKIWDMTDSRA----------KPKHTIN----TIAPVGRVKWRPARSYHLATCS-----M  284 (839)
T ss_pred             EEeecCCCc-eeeecCCCccEEEEeccCCCc----------cceeEEe----ecceeeeeeeccCccchhhhhh-----c
Confidence            999999877 579999999999999986311          1111121    2458999999999999999884     4


Q ss_pred             CCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          457 GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       457 g~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                      ..|-.|+|||++.     .--+.+++..|+..++.++|-
T Consensus       285 v~dtsV~VWDvrR-----PYIP~~t~~eH~~~vt~i~W~  318 (839)
T KOG0269|consen  285 VVDTSVHVWDVRR-----PYIPYATFLEHTDSVTGIAWD  318 (839)
T ss_pred             cccceEEEEeecc-----ccccceeeeccCccccceecc
Confidence            5689999999984     345667888899999998884

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=3.7e-29  Score=208.40  Aligned_cols=265  Identities=17%  Similarity=0.254  Sum_probs=222.7

Q ss_pred             EecCCCceeEEEecC--CCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          136 TIIHPGEVNRIRELP--QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p--~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      --+|+.+|-.++|+|  .++.+|++++.||.-.+-+-+++            .-+.++.||.+ +|++..++.+..+-++
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg------------dwigtfeghkg-avw~~~l~~na~~aas   76 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG------------DWIGTFEGHKG-AVWSATLNKNATRAAS   76 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC------------CcEEeeeccCc-ceeeeecCchhhhhhh
Confidence            358999999999998  58889999999998888777777            66789999998 7999999988888999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      ++.|=+-++||.-++...                                        .. ..|..-|.+++|+.+. +.
T Consensus        77 aaadftakvw~a~tgdel----------------------------------------hs-f~hkhivk~~af~~ds-~~  114 (334)
T KOG0278|consen   77 AAADFTAKVWDAVTGDEL----------------------------------------HS-FEHKHIVKAVAFSQDS-NY  114 (334)
T ss_pred             hcccchhhhhhhhhhhhh----------------------------------------hh-hhhhheeeeEEecccc-hh
Confidence            999999999998654321                                        22 2478889999999998 78


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      |++|+.+..++|||+...+.|. ..+.+|.+.|..+.|.. ..+.|++++.|++||+||.++      +..++++. ...
T Consensus       115 lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rT------gt~v~sL~-~~s  185 (334)
T KOG0278|consen  115 LLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRT------GTEVQSLE-FNS  185 (334)
T ss_pred             hhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEecc------CcEEEEEe-cCC
Confidence            9999999999999999888654 44569999999999998 788899999999999999999      78888887 578


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  453 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~  453 (496)
                      +|+++..+++|+ ++ +-...+.|.+||....+               ++.... -.-.|.+.+.+|+...++       
T Consensus       186 ~VtSlEvs~dG~-il-Tia~gssV~Fwdaksf~---------------~lKs~k-~P~nV~SASL~P~k~~fV-------  240 (334)
T KOG0278|consen  186 PVTSLEVSQDGR-IL-TIAYGSSVKFWDAKSFG---------------LLKSYK-MPCNVESASLHPKKEFFV-------  240 (334)
T ss_pred             CCcceeeccCCC-EE-EEecCceeEEecccccc---------------ceeecc-CccccccccccCCCceEE-------
Confidence            899999999998 44 66667899999998852               222221 223588999999876555       


Q ss_pred             CCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEeccCC
Q 010997          454 DSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP  496 (496)
Q Consensus       454 ~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~sP  496 (496)
                       +||.|..++.||..      +++.+..+ ++|.++|.+|.|+|
T Consensus       241 -aGged~~~~kfDy~------TgeEi~~~nkgh~gpVhcVrFSP  277 (334)
T KOG0278|consen  241 -AGGEDFKVYKFDYN------TGEEIGSYNKGHFGPVHCVRFSP  277 (334)
T ss_pred             -ecCcceEEEEEecc------CCceeeecccCCCCceEEEEECC
Confidence             67778999999999      78877775 99999999999998

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-28  Score=230.84  Aligned_cols=255  Identities=19%  Similarity=0.317  Sum_probs=213.6

Q ss_pred             cCCCcee---EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          138 IHPGEVN---RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       138 ~h~~~V~---~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .|...|+   .+..+.+++++|.|||.||.|++|++........      ......++.|.+ .|..+....+++.|+|+
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------~~~~asme~HsD-WVNDiiL~~~~~tlIS~   91 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------TPYIASMEHHSD-WVNDIILCGNGKTLISA   91 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------cchhhhhhhhHh-HHhhHHhhcCCCceEEe
Confidence            3445566   5666667888999999999999999987743321      124667888998 79999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE-ccCCCce
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF-CPSSAQE  293 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~  293 (496)
                      |.|-+|++|+.....                                      .....++..|.+-|.|+++ .++. .+
T Consensus        92 SsDtTVK~W~~~~~~--------------------------------------~~c~stir~H~DYVkcla~~ak~~-~l  132 (735)
T KOG0308|consen   92 SSDTTVKVWNAHKDN--------------------------------------TFCMSTIRTHKDYVKCLAYIAKNN-EL  132 (735)
T ss_pred             cCCceEEEeecccCc--------------------------------------chhHhhhhcccchheeeeecccCc-ee
Confidence            999999999987532                                      1123567789999999999 5665 78


Q ss_pred             EEEEcCCCeEEEEEccCCCccc--------eeee-ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPV--------IKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  364 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~--------~~~~-~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~  364 (496)
                      +++||-|+.|.+||+.++....        ...+ .++...|++++.++ .+..|++|+..+.|++||.++      +..
T Consensus       133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt------~~k  205 (735)
T KOG0308|consen  133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRT------CKK  205 (735)
T ss_pred             EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEecccc------ccc
Confidence            9999999999999999763201        1112 27888999999999 899999999999999999999      788


Q ss_pred             ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCc
Q 010997          365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  444 (496)
Q Consensus       365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~  444 (496)
                      +..+++|+..|..+..+++|..+| +++.||+|++||+...               .+++++..|...|+++..+|+-..
T Consensus       206 imkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQ---------------rCl~T~~vH~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  206 IMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQ---------------RCLATYIVHKEGVWALQSSPSFTH  269 (735)
T ss_pred             eeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeecccc---------------ceeeeEEeccCceEEEeeCCCcce
Confidence            999999999999999999999865 9999999999999874               677888899999999999998887


Q ss_pred             EEEEecCCCCCCCCCCeEEEeecCC
Q 010997          445 TVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       445 l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      ++        +||.||.|..=|+++
T Consensus       270 vY--------sG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  270 VY--------SGGRDGNIYRTDLRN  286 (735)
T ss_pred             EE--------ecCCCCcEEecccCC
Confidence            77        888899999999986

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.1e-28  Score=233.61  Aligned_cols=259  Identities=19%  Similarity=0.318  Sum_probs=183.5

Q ss_pred             EEe-cCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCcc-c-c---ccCCCCCceec------------c
Q 010997          190 ILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPA-T-A---KSAGSSGSIIK------------Q  251 (496)
Q Consensus       190 ~l~-~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~-~---~~~~~~~~~~~------------~  251 (496)
                      .+. .|.+ +|+++.|++||+|||+||.||.|+||.+............ . .   ....+......            .
T Consensus       261 e~~~ah~g-aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  261 EISNAHKG-AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             ccccccCC-cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            345 7777 7999999999999999999999999998762210000000 0 0   00000000000            0


Q ss_pred             CCCCCCCCCCC---CCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEE
Q 010997          252 SPKPGDGNDKA---ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC  328 (496)
Q Consensus       252 ~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  328 (496)
                      ........+.+   .-....+|+..|.+|.+.|.+|.|+.++  +|++++.|.+|+||++....  ++..+ .|...|+|
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--CL~~F-~HndfVTc  414 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--CLKVF-SHNDFVTC  414 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc--eeeEE-ecCCeeEE
Confidence            00000111111   1123457888999999999999999875  89999999999999998777  67776 79999999


Q ss_pred             EEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997          329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  408 (496)
Q Consensus       329 i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~  408 (496)
                      |+|+|.|.+||++|+.||.||||++..       ..+.....-..-|++++|.|+|++. +.|+.+|.+++|+..... .
T Consensus       415 VaFnPvDDryFiSGSLD~KvRiWsI~d-------~~Vv~W~Dl~~lITAvcy~PdGk~a-vIGt~~G~C~fY~t~~lk-~  485 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGSLDGKVRLWSISD-------KKVVDWNDLRDLITAVCYSPDGKGA-VIGTFNGYCRFYDTEGLK-L  485 (712)
T ss_pred             EEecccCCCcEeecccccceEEeecCc-------CeeEeehhhhhhheeEEeccCCceE-EEEEeccEEEEEEccCCe-E
Confidence            999999999999999999999999997       4454454455889999999999975 589999999999998742 1


Q ss_pred             cCCCCCCCCCCCeeEEEe----cCCCCCcceEEecCCCCc-EEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH
Q 010997          409 VEQGPRTTNYPAGLFFQH----AGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  483 (496)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~----~~h~~~V~~~~~~p~~~~-l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~  483 (496)
                      +..         ..+...    ..|. .|+.+.|.|.... ++|+        +.|..|||+|.+      +..++..|+
T Consensus       486 ~~~---------~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT--------SnDSrIRI~d~~------~~~lv~KfK  541 (712)
T KOG0283|consen  486 VSD---------FHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT--------SNDSRIRIYDGR------DKDLVHKFK  541 (712)
T ss_pred             EEe---------eeEeeccCccccCc-eeeeeEecCCCCCeEEEe--------cCCCceEEEecc------chhhhhhhc
Confidence            110         011111    1123 7999999997765 5533        335899999998      578888888


Q ss_pred             hccc
Q 010997          484 KFKA  487 (496)
Q Consensus       484 ~h~~  487 (496)
                      |+.+
T Consensus       542 G~~n  545 (712)
T KOG0283|consen  542 GFRN  545 (712)
T ss_pred             cccc
Confidence            7754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.3e-27  Score=213.89  Aligned_cols=265  Identities=17%  Similarity=0.319  Sum_probs=213.0

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  220 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i  220 (496)
                      -.+.++...| ....++||+.|..+.++|....            +.+.++.||.. .|+.+.++|+...+++++.|..|
T Consensus       220 pgi~ald~~~-s~~~ilTGG~d~~av~~d~~s~------------q~l~~~~Gh~k-ki~~v~~~~~~~~v~~aSad~~i  285 (506)
T KOG0289|consen  220 PGITALDIIP-SSSKILTGGEDKTAVLFDKPSN------------QILATLKGHTK-KITSVKFHKDLDTVITASADEII  285 (506)
T ss_pred             CCeeEEeecC-CCCcceecCCCCceEEEecchh------------hhhhhccCcce-EEEEEEeccchhheeecCCcceE
Confidence            4678888888 4678899999999999999988            77889999998 69999999999999999999999


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  300 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  300 (496)
                      +||.......                                        ......|..+|+.+..+|.| .+|++++.|
T Consensus       286 ~vws~~~~s~----------------------------------------~~~~~~h~~~V~~ls~h~tg-eYllsAs~d  324 (506)
T KOG0289|consen  286 RVWSVPLSSE----------------------------------------PTSSRPHEEPVTGLSLHPTG-EYLLSASND  324 (506)
T ss_pred             EeeccccccC----------------------------------------ccccccccccceeeeeccCC-cEEEEecCC
Confidence            9999764321                                        14566799999999999999 799999999


Q ss_pred             CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEE
Q 010997          301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW  380 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~  380 (496)
                      |+..+.|++++............-.+++.+|+| |+.+|++|+.||.|+|||+.+      ...+..|.+|.++|..++|
T Consensus       325 ~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks------~~~~a~Fpght~~vk~i~F  397 (506)
T KOG0289|consen  325 GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS------QTNVAKFPGHTGPVKAISF  397 (506)
T ss_pred             ceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC------ccccccCCCCCCceeEEEe
Confidence            999999999998322222222345689999999 999999999999999999999      6788999999999999999


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCC
Q 010997          381 SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGG  460 (496)
Q Consensus       381 sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg  460 (496)
                      +.+|-+ ||++++|+.|++||+++....             ..+.+.. ...|.++.|.+.|.+|+++        |.|=
T Consensus       398 sENGY~-Lat~add~~V~lwDLRKl~n~-------------kt~~l~~-~~~v~s~~fD~SGt~L~~~--------g~~l  454 (506)
T KOG0289|consen  398 SENGYW-LATAADDGSVKLWDLRKLKNF-------------KTIQLDE-KKEVNSLSFDQSGTYLGIA--------GSDL  454 (506)
T ss_pred             ccCceE-EEEEecCCeEEEEEehhhccc-------------ceeeccc-cccceeEEEcCCCCeEEee--------ccee
Confidence            999975 689999999999999985211             1122222 2269999999999988754        3334


Q ss_pred             eEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997          461 TLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  494 (496)
Q Consensus       461 ~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~  494 (496)
                      .|++++-...    ...++.++..|.+..+.+.|
T Consensus       455 ~Vy~~~k~~k----~W~~~~~~~~~sg~st~v~F  484 (506)
T KOG0289|consen  455 QVYICKKKTK----SWTEIKELADHSGLSTGVRF  484 (506)
T ss_pred             EEEEEecccc----cceeeehhhhcccccceeee
Confidence            5555543322    35677788888877777766

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=5.1e-28  Score=220.85  Aligned_cols=290  Identities=17%  Similarity=0.247  Sum_probs=210.3

Q ss_pred             cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 010997           93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA  172 (496)
Q Consensus        93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~  172 (496)
                      .+|+-++++..|++.-.....               +.++.+. ..-.-.|++++|++ .+..|++.+....++|+|...
T Consensus       183 ~sGs~Dy~v~~wDf~gMdas~---------------~~fr~l~-P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl~DRdG  245 (641)
T KOG0772|consen  183 VSGSLDYTVKFWDFQGMDASM---------------RSFRQLQ-PCETHQINSLQYSV-TGDQILVVSGSAQAKLLDRDG  245 (641)
T ss_pred             eeccccceEEEEecccccccc---------------hhhhccC-cccccccceeeecC-CCCeEEEEecCcceeEEccCC
Confidence            466789999999875432211               1111110 12233699999999 666666666677999999887


Q ss_pred             CCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCcccccc-CCccccccCCCCCceec
Q 010997          173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIK  250 (496)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~  250 (496)
                      ........|.+-..-+..-.||.. .++|.+|+|..+ .++|++.||++||||+++...... +.+              
T Consensus       246 ~~~~e~~KGDQYI~Dm~nTKGHia-~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~--------------  310 (641)
T KOG0772|consen  246 FEIVEFSKGDQYIRDMYNTKGHIA-ELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT--------------  310 (641)
T ss_pred             ceeeeeeccchhhhhhhccCCcee-eeeccccccCcccceEEecCCCcEEEEecCCchhheeEEee--------------
Confidence            654444444333344455689998 689999999855 899999999999999986432110 000              


Q ss_pred             cCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC-ccceeeeccCCC--CeE
Q 010997          251 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDA--DLH  327 (496)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~--~v~  327 (496)
                                           ....+..-+++.++|++++ ..||+|+.||.|.+|+.+... .+......+|..  .|+
T Consensus       311 ---------------------k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~It  368 (641)
T KOG0772|consen  311 ---------------------KPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDIT  368 (641)
T ss_pred             ---------------------ccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCcee
Confidence                                 1112344578999999999 679999999999999986654 344556678887  999


Q ss_pred             EEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC--CCEEEEEEcCCCCCEEEEEeC------CCcEEE
Q 010997          328 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAE------DGLLNI  399 (496)
Q Consensus       328 ~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~--~~i~~l~~sp~~~~llas~~~------dg~i~i  399 (496)
                      ||+||+ ++++|++-+.|+++++||+|++.     +++....+-.  .+-+.++|||+.+ |+++|..      -|.+.+
T Consensus       369 si~FS~-dg~~LlSRg~D~tLKvWDLrq~k-----kpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f  441 (641)
T KOG0772|consen  369 SISFSY-DGNYLLSRGFDDTLKVWDLRQFK-----KPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFF  441 (641)
T ss_pred             EEEecc-ccchhhhccCCCceeeeeccccc-----cchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEE
Confidence            999999 99999999999999999999974     6676665532  3567899999998 5567764      467999


Q ss_pred             EECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997          400 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       400 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~  466 (496)
                      ||..+.               ..+..+.-....|..+.|+|.-+.+++        |+.||+++||-
T Consensus       442 ~d~~t~---------------d~v~ki~i~~aSvv~~~WhpkLNQi~~--------gsgdG~~~vyY  485 (641)
T KOG0772|consen  442 FDRMTL---------------DTVYKIDISTASVVRCLWHPKLNQIFA--------GSGDGTAHVYY  485 (641)
T ss_pred             Eeccce---------------eeEEEecCCCceEEEEeecchhhheee--------ecCCCceEEEE
Confidence            998775               444444445678999999999888885        44468898863

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=1.3e-27  Score=215.71  Aligned_cols=294  Identities=18%  Similarity=0.305  Sum_probs=222.1

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCC-----CCCCCceEE-ecCCCCcceeeeecCC
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGA-----TNSRPDLIL-TGHQDNAEFALAMCPT  207 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~l-~~h~~~~v~~l~~~p~  207 (496)
                      ...-.|.-.|.+++++| +..++.+++.+|+|.=|++.++.....+...     ....+...- .+|.. .+.+++.++|
T Consensus       136 ~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~k-eil~~avS~D  213 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVK-EILTLAVSSD  213 (479)
T ss_pred             eeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccc-eeEEEEEcCC
Confidence            34557999999999999 7789999999999999999988644211111     011222222 37877 6899999999


Q ss_pred             CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997          208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  287 (496)
Q Consensus       208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  287 (496)
                      |+||++|+.|..|.||+.++.                                        ++++.+.+|.+.|.+++|-
T Consensus       214 gkylatgg~d~~v~Iw~~~t~----------------------------------------ehv~~~~ghr~~V~~L~fr  253 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTL----------------------------------------EHVKVFKGHRGAVSSLAFR  253 (479)
T ss_pred             CcEEEecCCCceEEEecCccc----------------------------------------chhhcccccccceeeeeee
Confidence            999999999999999999753                                        3446789999999999996


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      ..- ..+++++.|++|++|++....  .+.++.+|.+.|..|.... .+..+-+|+.|+++++|++..       .....
T Consensus       254 ~gt-~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e-------esqli  322 (479)
T KOG0299|consen  254 KGT-SELYSASADRSVKVWSIDQLS--YVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE-------ESQLI  322 (479)
T ss_pred             cCc-cceeeeecCCceEEEehhHhH--HHHHHhCCccceeeechhc-ccceEEeccccceeEEEeccc-------cceee
Confidence            544 789999999999999998876  6777889999999998887 677888888999999999965       45566


Q ss_pred             eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                      +.+|.+.+-|++|-.+..  |++|+.||.|.+|++.+.........+....+..   ....+...|++++..| +..|+|
T Consensus       323 frg~~~sidcv~~In~~H--fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~---~~~~~~~Witsla~i~-~sdL~a  396 (479)
T KOG0299|consen  323 FRGGEGSIDCVAFINDEH--FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL---DPVNGNFWITSLAVIP-GSDLLA  396 (479)
T ss_pred             eeCCCCCeeeEEEecccc--eeeccCCceEEEeeecccCceeEeeccccccCCc---cccccccceeeeEecc-cCceEE
Confidence            888999999999987765  5699999999999998843222111111000000   0112234789999999 555666


Q ss_pred             EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                             ||+.+|.|++|.+.+..-  .-.++..+. ..+-|++++|++
T Consensus       397 -------sGS~~G~vrLW~i~~g~r--~i~~l~~ls-~~GfVNsl~f~~  435 (479)
T KOG0299|consen  397 -------SGSWSGCVRLWKIEDGLR--AINLLYSLS-LVGFVNSLAFSN  435 (479)
T ss_pred             -------ecCCCCceEEEEecCCcc--ccceeeecc-cccEEEEEEEcc
Confidence                   666779999999985421  234555666 678899999874

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=3.3e-28  Score=216.48  Aligned_cols=264  Identities=20%  Similarity=0.282  Sum_probs=204.4

Q ss_pred             ecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 010997           92 QTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE  171 (496)
Q Consensus        92 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~  171 (496)
                      .+.|+.+..+.+|++...+.                   -.+..+.+-.|.|+++.|.+ ++..+++++.|+.+++|++.
T Consensus       190 latgg~Dr~Ik~W~v~~~k~-------------------~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd  249 (459)
T KOG0288|consen  190 LATGGSDRIIKLWNVLGEKS-------------------ELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVD  249 (459)
T ss_pred             hhhcchhhhhhhhhcccchh-------------------hhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeecc
Confidence            35566777788887643220                   01223446778999999999 66778888999999999999


Q ss_pred             CCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceecc
Q 010997          172 AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ  251 (496)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (496)
                      ..            +...+|.||++ .|+++.|......+++|+.|.+|++||+....+.....                
T Consensus       250 ~~------------r~~~TLsGHtd-kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l----------------  300 (459)
T KOG0288|consen  250 SL------------RLRHTLSGHTD-KVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL----------------  300 (459)
T ss_pred             ch------------hhhhhhccccc-ceeeehhhccccceeeccccchhhhhhhhhhheecccc----------------
Confidence            88            77789999999 69999998877779999999999999998755432211                


Q ss_pred             CCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEe
Q 010997          252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW  331 (496)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~  331 (496)
                                               ....+.+|..++   ..+++|..|++|++||.|+..  .......+ +.|+++..
T Consensus       301 -------------------------~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~--~~~sv~~g-g~vtSl~l  349 (459)
T KOG0288|consen  301 -------------------------PGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSAD--KTRSVPLG-GRVTSLDL  349 (459)
T ss_pred             -------------------------ccccccceEecc---eeeeecccccceEEEeccCCc--eeeEeecC-cceeeEee
Confidence                                     124566777662   569999999999999999988  45555444 59999999


Q ss_pred             cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC----CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997          332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  407 (496)
Q Consensus       332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h----~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~  407 (496)
                      ++ ++..|++++.|.++.++|+++      ....+.+...    ....+.+.|||++.| +|+||.||.|+||++.+.  
T Consensus       350 s~-~g~~lLsssRDdtl~viDlRt------~eI~~~~sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~iW~v~tg--  419 (459)
T KOG0288|consen  350 SM-DGLELLSSSRDDTLKVIDLRT------KEIRQTFSAEGFKCASDWTRVVFSPDGSY-VAAGSADGSVYIWSVFTG--  419 (459)
T ss_pred             cc-CCeEEeeecCCCceeeeeccc------ccEEEEeeccccccccccceeEECCCCce-eeeccCCCcEEEEEccCc--
Confidence            99 899999999999999999998      4555555431    234889999999997 579999999999999985  


Q ss_pred             ccCCCCCCCCCCCeeEEEecC--CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997          408 KVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~  466 (496)
                                   .+-+.+..  ....|++++|+|.|.+++        +++.++.+.+|.
T Consensus       420 -------------KlE~~l~~s~s~~aI~s~~W~~sG~~Ll--------sadk~~~v~lW~  459 (459)
T KOG0288|consen  420 -------------KLEKVLSLSTSNAAITSLSWNPSGSGLL--------SADKQKAVTLWT  459 (459)
T ss_pred             -------------eEEEEeccCCCCcceEEEEEcCCCchhh--------cccCCcceEecC
Confidence                         23333333  233699999999999988        667779999994

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-27  Score=217.00  Aligned_cols=240  Identities=20%  Similarity=0.292  Sum_probs=197.6

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKD  217 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~D  217 (496)
                      ....|.++.|-. ||.+||+|...|.|+|||+.+.            ..+..+.+|+. +|..+.|+|.+ ..|++|+.|
T Consensus        67 Fk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r------------~iLR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd  132 (487)
T KOG0310|consen   67 FKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSR------------VILRQLYAHQA-PVHVTKFSPQDNTMLVSGSDD  132 (487)
T ss_pred             hccceeEEEeec-CCeEEEccCCcCcEEEeccccH------------HHHHHHhhccC-ceeEEEecccCCeEEEecCCC
Confidence            345699999988 9999999999999999996553            44567889998 79999999975 478899999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      +.+++||+.+...                                        ...+.+|++.|.|.+|+|..+.+++||
T Consensus       133 ~v~k~~d~s~a~v----------------------------------------~~~l~~htDYVR~g~~~~~~~hivvtG  172 (487)
T KOG0310|consen  133 KVVKYWDLSTAYV----------------------------------------QAELSGHTDYVRCGDISPANDHIVVTG  172 (487)
T ss_pred             ceEEEEEcCCcEE----------------------------------------EEEecCCcceeEeeccccCCCeEEEec
Confidence            9999999986432                                        246789999999999999987899999


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  377 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~  377 (496)
                      |.||+|++||+|... ..+..+ .|..+|..+.+-| ++.++|+++.. .|++||+-+.     ++.+..+..|...|+|
T Consensus       173 sYDg~vrl~DtR~~~-~~v~el-nhg~pVe~vl~lp-sgs~iasAgGn-~vkVWDl~~G-----~qll~~~~~H~KtVTc  243 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSLT-SRVVEL-NHGCPVESVLALP-SGSLIASAGGN-SVKVWDLTTG-----GQLLTSMFNHNKTVTC  243 (487)
T ss_pred             CCCceEEEEEeccCC-ceeEEe-cCCCceeeEEEcC-CCCEEEEcCCC-eEEEEEecCC-----ceehhhhhcccceEEE
Confidence            999999999999986 234443 8999999999999 88999998754 6999999962     3555556669999999


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  457 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg  457 (496)
                      +.+..++..| .+|+-|+.|++||+...               ..++.. ...++|.+++.+|++..++        .|.
T Consensus       244 L~l~s~~~rL-lS~sLD~~VKVfd~t~~---------------Kvv~s~-~~~~pvLsiavs~dd~t~v--------iGm  298 (487)
T KOG0310|consen  244 LRLASDSTRL-LSGSLDRHVKVFDTTNY---------------KVVHSW-KYPGPVLSIAVSPDDQTVV--------IGM  298 (487)
T ss_pred             EEeecCCceE-eecccccceEEEEccce---------------EEEEee-ecccceeeEEecCCCceEE--------Eec
Confidence            9999999865 59999999999997764               444433 4577999999999888777        455


Q ss_pred             CCCeEEEee
Q 010997          458 GGGTLQIWR  466 (496)
Q Consensus       458 ~Dg~i~iw~  466 (496)
                      .||.+.+=+
T Consensus       299 snGlv~~rr  307 (487)
T KOG0310|consen  299 SNGLVSIRR  307 (487)
T ss_pred             ccceeeeeh
Confidence            567777663

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.7e-26  Score=227.15  Aligned_cols=240  Identities=16%  Similarity=0.201  Sum_probs=174.6

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc-e
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-V  211 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~-l  211 (496)
                      .....+|.+.|.+++|+|.++++||+|+.||+|+|||+.+......    ....+...+.+|.. .|.+++|+|++.. |
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----~i~~p~~~L~gH~~-~V~sVaf~P~g~~iL  141 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----EIKDPQCILKGHKK-KISIIDWNPMNYYIM  141 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc----ccccceEEeecCCC-cEEEEEECCCCCeEE
Confidence            3456689999999999996688999999999999999976421100    01134567889987 6999999999875 5


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ++|+.|++|+|||++++..                                        ...+. |...|.+++|+|+| 
T Consensus       142 aSgS~DgtIrIWDl~tg~~----------------------------------------~~~i~-~~~~V~SlswspdG-  179 (568)
T PTZ00420        142 CSSGFDSFVNIWDIENEKR----------------------------------------AFQIN-MPKKLSSLKWNIKG-  179 (568)
T ss_pred             EEEeCCCeEEEEECCCCcE----------------------------------------EEEEe-cCCcEEEEEECCCC-
Confidence            7999999999999986432                                        12232 45689999999999 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEE-----EecCCCCcEEEEEcCCC----cEEEEeCCCCCCCCCC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV-----DWNPLDDNLILTGSADN----SVRMFDRRNLTSNGVG  362 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i-----~~sp~~~~~l~sgs~dg----~i~iwd~~~~~~~~~~  362 (496)
                      .+|++++.|+.|+|||++++.  .+..+.+|.+.+.+.     .|++ ++.+|++++.|+    .|+|||++...     
T Consensus       180 ~lLat~s~D~~IrIwD~Rsg~--~i~tl~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~-----  251 (568)
T PTZ00420        180 NLLSGTCVGKHMHIIDPRKQE--IASSFHIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTT-----  251 (568)
T ss_pred             CEEEEEecCCEEEEEECCCCc--EEEEEecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCC-----
Confidence            789999999999999999987  556677888765433     3457 778888877664    79999999642     


Q ss_pred             CCceEec--cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          363 SPINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       363 ~~~~~~~--~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                      .++..+.  .+.+.+......+++. +|++|+.|+.|++|++... .            ...+.. ..+..++..++|.|
T Consensus       252 ~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~-~------------~~~l~~-~~s~~p~~g~~f~P  316 (568)
T PTZ00420        252 SALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLG-S------------IRKVNE-YKSCSPFRSFGFLP  316 (568)
T ss_pred             CceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCC-c------------EEeecc-cccCCCccceEEcc
Confidence            4555543  3334443444444455 6789999999999999763 1            011211 22556777888888


Q ss_pred             CC
Q 010997          441 SD  442 (496)
Q Consensus       441 ~~  442 (496)
                      ..
T Consensus       317 kr  318 (568)
T PTZ00420        317 KQ  318 (568)
T ss_pred             cc
Confidence            53

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2.1e-26  Score=193.32  Aligned_cols=275  Identities=20%  Similarity=0.316  Sum_probs=215.9

Q ss_pred             cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC
Q 010997           93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA  172 (496)
Q Consensus        93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~  172 (496)
                      ++|+.+....||+++...                   ..+.....+|.+.|-.++|.|..++++|+++.|.+|++||+..
T Consensus        36 asgs~dktv~v~n~e~~r-------------------~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   36 ASGSFDKTVSVWNLERDR-------------------FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             eecccCCceEEEEecchh-------------------hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence            466788888999886531                   1223344689999999999999999999999999999999998


Q ss_pred             CCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccC
Q 010997          173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS  252 (496)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (496)
                      .            ++........++  .-+.|+|+|++++.++.|..|.+.|.++.+...                    
T Consensus        97 ~------------k~~~~i~~~~en--i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~--------------------  142 (313)
T KOG1407|consen   97 G------------KCTARIETKGEN--INITWSPDGEYIAVGNKDDRITFIDARTYKIVN--------------------  142 (313)
T ss_pred             C------------cEEEEeeccCcc--eEEEEcCCCCEEEEecCcccEEEEEecccceee--------------------
Confidence            8            566555554442  478999999999999999999999998643211                    


Q ss_pred             CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec
Q 010997          253 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  332 (496)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s  332 (496)
                                           -......+..++|+-++ ++|+.....|+|.|.....-+  .+..+.+|.....||.|+
T Consensus       143 ---------------------~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLk--pv~si~AH~snCicI~f~  198 (313)
T KOG1407|consen  143 ---------------------EEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLK--PVQSIKAHPSNCICIEFD  198 (313)
T ss_pred             ---------------------hhcccceeeeeeecCCC-CEEEEecCCceEEEEeccccc--cccccccCCcceEEEEEC
Confidence                                 11223467788998666 667666677999999888666  677788999999999999


Q ss_pred             CCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCC
Q 010997          333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  412 (496)
Q Consensus       333 p~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~  412 (496)
                      | +|.+||+|+.|..+.|||+..      ..+++.+..+.-+|..|.||.+|+ +||+|++|..|-|=++.++.      
T Consensus       199 p-~GryfA~GsADAlvSLWD~~E------LiC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd------  264 (313)
T KOG1407|consen  199 P-DGRYFATGSADALVSLWDVDE------LICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGD------  264 (313)
T ss_pred             C-CCceEeeccccceeeccChhH------hhhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCC------
Confidence            9 999999999999999999998      678999999999999999999999 57999999999998888852      


Q ss_pred             CCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC-CCCCCCCeEEEeecC
Q 010997          413 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC-DSTGGGGTLQIWRMS  468 (496)
Q Consensus       413 ~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~-~sgg~Dg~i~iw~~~  468 (496)
                               .+.. ..+.++...++|+|....|+.+|++.- .+.-..|.|+||-+.
T Consensus       265 ---------~~~e-I~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  265 ---------RVWE-IPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             ---------eEEE-eeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence                     2222 235778899999997665544544320 012234788988775

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.96  E-value=1.2e-26  Score=197.36  Aligned_cols=312  Identities=21%  Similarity=0.323  Sum_probs=227.0

Q ss_pred             EEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCC-
Q 010997           85 QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSP-  163 (496)
Q Consensus        85 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg-  163 (496)
                      -++++||..-. .+|.+.+..++                ++..  .+....++.|.|+|..++-+|.+..+|+|+..+- 
T Consensus        27 icFlvgTnslK-~dNqVhll~~d----------------~e~s--~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s   87 (370)
T KOG1007|consen   27 ICFLVGTNSLK-EDNQVHLLRLD----------------SEGS--ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTS   87 (370)
T ss_pred             eEEEEeccccC-CcceeEEEEec----------------Cccc--hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccC
Confidence            47778875543 44776655432                2221  2223345678999999999999999999987632 


Q ss_pred             ------cEEEEeCCCCCCccccCCCCCCCCceEEe-cCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCc
Q 010997          164 ------DVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDP  236 (496)
Q Consensus       164 ------~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~  236 (496)
                            .+-||.+........   ....+.+..|. .+.+ .|.|+.|.|++..|++-. |..|.+|+++........-.
T Consensus        88 ~s~vl~~aaiw~ipe~~~~S~---~~tlE~v~~Ldteavg-~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~  162 (370)
T KOG1007|consen   88 DSGVLTGAAIWQIPEPLGQSN---SSTLECVASLDTEAVG-KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVL  162 (370)
T ss_pred             CCcceeeEEEEecccccCccc---cchhhHhhcCCHHHhC-ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeec
Confidence                  578999876532211   11223344444 2333 589999999999888877 89999999986543211000


Q ss_pred             cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC-ceEEEEcCCCeEEEEEccCCCccc
Q 010997          237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPV  315 (496)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~  315 (496)
                                                        ...-.+|....++-+|+|... +.+++ ..|+++..||+|+... .
T Consensus       163 ----------------------------------ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~-~  206 (370)
T KOG1007|consen  163 ----------------------------------SSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKK-N  206 (370)
T ss_pred             ----------------------------------ccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhh-h
Confidence                                              001112566778889999432 44444 4679999999998763 3


Q ss_pred             eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997          316 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  395 (496)
Q Consensus       316 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg  395 (496)
                      .....+|...|..+.|+|....+|++|+.||.|+|||.|+.+     .++.++.+|...|.+|.|+|....|+.+|+.|.
T Consensus       207 ~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs  281 (370)
T KOG1007|consen  207 NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS  281 (370)
T ss_pred             cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEecCccceEEEecCCCc
Confidence            445568999999999999777889999999999999999864     789999999999999999998888889999999


Q ss_pred             cEEEEECCCCCcccCCCCC--------------CCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCe
Q 010997          396 LLNIWDYEKVGKKVEQGPR--------------TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT  461 (496)
Q Consensus       396 ~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~  461 (496)
                      .|.+|.......++.....              ....+...+..+..|.+.|++++|+.-++|++||-|.|       |.
T Consensus       282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD-------GR  354 (370)
T KOG1007|consen  282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD-------GR  354 (370)
T ss_pred             eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC-------ce
Confidence            9999998765433221110              01234456667889999999999999999999988887       99


Q ss_pred             EEEeecC
Q 010997          462 LQIWRMS  468 (496)
Q Consensus       462 i~iw~~~  468 (496)
                      +.|=.+.
T Consensus       355 viIs~V~  361 (370)
T KOG1007|consen  355 VIISSVP  361 (370)
T ss_pred             EEeecCC
Confidence            9988776

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2e-27  Score=200.09  Aligned_cols=266  Identities=15%  Similarity=0.193  Sum_probs=204.5

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      -...+|+|.|+|+...- +.+.++||+.|.++++||+.++            +.+..+....  +|..+.|+++|++++.
T Consensus        46 Gty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tG------------k~la~~k~~~--~Vk~~~F~~~gn~~l~  110 (327)
T KOG0643|consen   46 GTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETG------------KQLATWKTNS--PVKRVDFSFGGNLILA  110 (327)
T ss_pred             eeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCC------------cEEEEeecCC--eeEEEeeccCCcEEEE
Confidence            35569999999999988 7889999999999999999999            5555665543  6899999999997776


Q ss_pred             ec-----CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          214 GG-----KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       214 g~-----~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      +.     .-+.|.++|++....                                 +....+|...+..+.+.++.+-|.|
T Consensus       111 ~tD~~mg~~~~v~~fdi~~~~~---------------------------------~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen  111 STDKQMGYTCFVSVFDIRDDSS---------------------------------DIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             EehhhcCcceEEEEEEccCChh---------------------------------hhcccCceEEecCCccceeeeeecc
Confidence            54     456899999875322                                 1123455677778889999999999


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      -+ ..|++|.+||.|.+||++++.. .+.....|...|+.+.++| +..++++|+.|.+-++||.++      ...+.++
T Consensus       158 l~-~~ii~Ghe~G~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~t------l~v~Kty  228 (327)
T KOG0643|consen  158 LG-ETIIAGHEDGSISIYDARTGKE-LVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRT------LEVLKTY  228 (327)
T ss_pred             cC-CEEEEecCCCcEEEEEcccCce-eeechhhhccccccccccC-CcceEEecccCccceeeeccc------eeeEEEe
Confidence            98 7999999999999999999863 4555678999999999999 999999999999999999999      5677777


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC--CCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT--TNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~  446 (496)
                      . -..+|++.+++|...+++..|+.+-    -|+.+.........+.  ...-.+.+....||-++|++++|+|+|....
T Consensus       229 ~-te~PvN~aaisP~~d~VilgGGqeA----~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs  303 (327)
T KOG0643|consen  229 T-TERPVNTAAISPLLDHVILGGGQEA----MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS  303 (327)
T ss_pred             e-ecccccceecccccceEEecCCcee----eeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccc
Confidence            6 4779999999998887765555442    2222211000000000  0001123456789999999999999998655


Q ss_pred             EEecCCCCCCCCCCeEEEeecCC
Q 010997          447 VSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                              |||.||.|++..+..
T Consensus       304 --------SGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  304 --------SGGEDGYVRLHHFDS  318 (327)
T ss_pred             --------cCCCCceEEEEEecc
Confidence                    888889999987763

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.5e-26  Score=199.29  Aligned_cols=244  Identities=18%  Similarity=0.354  Sum_probs=192.6

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC--c
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--Y  210 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~--~  210 (496)
                      ......|.+.|++++.   ++.++|+|+.|-+|+|||+.+.            .....+-.|.+ .|+++.|.+.-.  .
T Consensus        36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~------------~qlg~ll~Hag-sitaL~F~~~~S~sh   99 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKR------------KQLGILLSHAG-SITALKFYPPLSKSH   99 (362)
T ss_pred             cccccccccceeEEEe---cceeEeccCCCCcEEEEeccch------------hhhcceecccc-ceEEEEecCCcchhh
Confidence            4456689999999998   6689999999999999999987            55567788877 699999998764  8


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      |++|+.||.|.+|+...                                        ...+..+.+|.+.|++++.+|.+
T Consensus       100 LlS~sdDG~i~iw~~~~----------------------------------------W~~~~slK~H~~~Vt~lsiHPS~  139 (362)
T KOG0294|consen  100 LLSGSDDGHIIIWRVGS----------------------------------------WELLKSLKAHKGQVTDLSIHPSG  139 (362)
T ss_pred             eeeecCCCcEEEEEcCC----------------------------------------eEEeeeecccccccceeEecCCC
Confidence            99999999999999863                                        34557889999999999999999


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                       .+-++.+.|+.+++||+-.++...+..+ .+  ..+.|.|+| .|.+|+.++.++ |-+|-+.+      ......+. 
T Consensus       140 -KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~--~at~v~w~~-~Gd~F~v~~~~~-i~i~q~d~------A~v~~~i~-  206 (362)
T KOG0294|consen  140 -KLALSVGGDQVLRTWNLVRGRVAFVLNL-KN--KATLVSWSP-QGDHFVVSGRNK-IDIYQLDN------ASVFREIE-  206 (362)
T ss_pred             -ceEEEEcCCceeeeehhhcCccceeecc-CC--cceeeEEcC-CCCEEEEEeccE-EEEEeccc------HhHhhhhh-
Confidence             7889999999999999998884333333 23  234499999 888888887765 88998887      33333333 


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe-cCCCCcEEEEe
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW-NASDPWTVVSV  449 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~p~~~~l~~s~  449 (496)
                      ....+.++.|-..+.  |++|++|+.|.+||....               .+.+.+.+|..+|-++.+ ......+++|+
T Consensus       207 ~~~r~l~~~~l~~~~--L~vG~d~~~i~~~D~ds~---------------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTa  269 (362)
T KOG0294|consen  207 NPKRILCATFLDGSE--LLVGGDNEWISLKDTDSD---------------TPLTEFLAHENRVKDIASYTNPEHEYLVTA  269 (362)
T ss_pred             ccccceeeeecCCce--EEEecCCceEEEeccCCC---------------ccceeeecchhheeeeEEEecCCceEEEEe
Confidence            335577888865543  459999999999999863               456667899999999984 32244567765


Q ss_pred             cCCCCCCCCCCeEEEeecCC
Q 010997          450 SDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      |.       ||.|+|||++-
T Consensus       270 SS-------DG~I~vWd~~~  282 (362)
T KOG0294|consen  270 SS-------DGFIKVWDIDM  282 (362)
T ss_pred             cc-------CceEEEEEccc
Confidence            55       59999999983

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=3.8e-26  Score=196.45  Aligned_cols=261  Identities=18%  Similarity=0.307  Sum_probs=200.1

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  219 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~  219 (496)
                      ...|.++.|+| .+..|+.++.||++++||+....            ....+ .|.. ++.+++|.+ ...+++|+.||.
T Consensus        13 ~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~------------l~~~~-~~~~-plL~c~F~d-~~~~~~G~~dg~   76 (323)
T KOG1036|consen   13 EDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANS------------LKLKF-KHGA-PLLDCAFAD-ESTIVTGGLDGQ   76 (323)
T ss_pred             hhceeeEEEcC-cCCcEEEEeccCcEEEEeccchh------------hhhhe-ecCC-ceeeeeccC-CceEEEeccCce
Confidence            46799999998 55556666799999999998772            11222 2444 789999986 457899999999


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      |+.+|++++..                                         ..+..|..+|.+|.+++.. ..+++||.
T Consensus        77 vr~~Dln~~~~-----------------------------------------~~igth~~~i~ci~~~~~~-~~vIsgsW  114 (323)
T KOG1036|consen   77 VRRYDLNTGNE-----------------------------------------DQIGTHDEGIRCIEYSYEV-GCVISGSW  114 (323)
T ss_pred             EEEEEecCCcc-----------------------------------------eeeccCCCceEEEEeeccC-CeEEEccc
Confidence            99999987543                                         4566799999999999876 68999999


Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-EeccCCCCEEEE
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCV  378 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i~~l  378 (496)
                      |++|++||.|...  ....+ .....|.|+..   .++.|++|+.|..|.+||+|++..     +.. .-..-+..+.+|
T Consensus       115 D~~ik~wD~R~~~--~~~~~-d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~-----~~q~reS~lkyqtR~v  183 (323)
T KOG1036|consen  115 DKTIKFWDPRNKV--VVGTF-DQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDE-----PFQRRESSLKYQTRCV  183 (323)
T ss_pred             CccEEEEeccccc--ccccc-ccCceEEEEec---cCCEEEEeecCceEEEEEcccccc-----hhhhccccceeEEEEE
Confidence            9999999999744  23333 34458999887   468899999999999999999652     221 112345678999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC---------CcceEEecCCCCcEEEEe
Q 010997          379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD---------KVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       379 ~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~V~~~~~~p~~~~l~~s~  449 (496)
                      ++-|++.- +|+++-||+|.+=.+....+.           ....+.+..|..         +|++++|+|-...++   
T Consensus       184 ~~~pn~eG-y~~sSieGRVavE~~d~s~~~-----------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfa---  248 (323)
T KOG1036|consen  184 ALVPNGEG-YVVSSIEGRVAVEYFDDSEEA-----------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFA---  248 (323)
T ss_pred             EEecCCCc-eEEEeecceEEEEccCCchHH-----------hhhceeEEeeecccCCceEEEEeceeEeccccceEE---
Confidence            99998775 578999999988666553111           123344455543         799999999766655   


Q ss_pred             cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                           |||.||.|.+||+.      ..+.+..+......|.+++|+
T Consensus       249 -----TgGsDG~V~~Wd~~------~rKrl~q~~~~~~SI~slsfs  283 (323)
T KOG1036|consen  249 -----TGGSDGIVNIWDLF------NRKRLKQLAKYETSISSLSFS  283 (323)
T ss_pred             -----ecCCCceEEEccCc------chhhhhhccCCCCceEEEEec
Confidence                 88888999999999      678888888888889999886

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.3e-27  Score=210.87  Aligned_cols=286  Identities=19%  Similarity=0.280  Sum_probs=213.6

Q ss_pred             HhhhhCcCCCCc--ceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccce
Q 010997           56 DWLANHNLVWPS--LSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKK  133 (496)
Q Consensus        56 ~~~~~~~~~wps--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (496)
                      +++.+|.+--|+  |+++|+.. +...+...+-+.+||     ++..|.||++.+..+..+...--+.-.........+.
T Consensus       163 nlYvHHD~ilpafPLC~ewld~-~~~~~~~gNyvAiGt-----mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~  236 (463)
T KOG0270|consen  163 NLYVHHDFILPAFPLCIEWLDH-GSKSGGAGNYVAIGT-----MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRS  236 (463)
T ss_pred             ceeEecceeccCcchhhhhhhc-CCCCCCCcceEEEec-----cCceeEEeccccccccccceeechhhhhhhhhhcccc
Confidence            455677765565  59999887 433333345676776     6678999999886653332100000000000000012


Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVL  212 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~  212 (496)
                      ....+|+++|..++|.....++||+||.|.+|++||+.++            +|..++..|.+ .|.++.|+|. ..+|+
T Consensus       237 ~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g------------~p~~s~~~~~k-~Vq~l~wh~~~p~~LL  303 (463)
T KOG0270|consen  237 NSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG------------KPKSSITHHGK-KVQTLEWHPYEPSVLL  303 (463)
T ss_pred             cccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC------------CcceehhhcCC-ceeEEEecCCCceEEE
Confidence            2345799999999999988899999999999999999999            77778887766 7999999997 45899


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.|++|.+.|.+.....                                        ...-...+.|..++|.|..+.
T Consensus       304 sGs~D~~V~l~D~R~~~~s----------------------------------------~~~wk~~g~VEkv~w~~~se~  343 (463)
T KOG0270|consen  304 SGSYDGTVALKDCRDPSNS----------------------------------------GKEWKFDGEVEKVAWDPHSEN  343 (463)
T ss_pred             eccccceEEeeeccCcccc----------------------------------------CceEEeccceEEEEecCCCce
Confidence            9999999999999842110                                        111123468999999999989


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      .|+++.+||+|+-+|+|.... ++.+..+|..+|.+|+++++...+++|++.|+.|++|++....    .+.+..-.-.-
T Consensus       344 ~f~~~tddG~v~~~D~R~~~~-~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~----~~~v~~~~~~~  418 (463)
T KOG0270|consen  344 SFFVSTDDGTVYYFDIRNPGK-PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS----PKSVKEHSFKL  418 (463)
T ss_pred             eEEEecCCceEEeeecCCCCC-ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC----Ccccccccccc
Confidence            999999999999999999864 5677889999999999999889999999999999999998743    22222211112


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +...|.++.|+-.+++|.|+..+.++|||+.+.
T Consensus       419 ~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  419 GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             cceeecccCCCcceEEEecCccceEEEeecccC
Confidence            347788999999989999999999999999874

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=200.00  Aligned_cols=264  Identities=21%  Similarity=0.342  Sum_probs=214.1

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC----CC----cc--------------------ccCCCCC
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ----PN----RH--------------------AVLGATN  184 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~----~~----~~--------------------~~~~~~~  184 (496)
                      +.+..+|.|.|++|+|++ .+.++++++.|++..||...-.    .+    ..                    ...++.-
T Consensus       183 L~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti  261 (481)
T KOG0300|consen  183 LATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI  261 (481)
T ss_pred             eeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence            456789999999999999 8889999999999999983211    00    00                    0111122


Q ss_pred             CCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997          185 SRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  264 (496)
Q Consensus       185 ~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (496)
                      ..|+..|.||.. .|.+..|...|+.+++++.|.+..+||++++.                                   
T Consensus       262 RvPl~~ltgH~~-vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-----------------------------------  305 (481)
T KOG0300|consen  262 RVPLMRLTGHRA-VVSACDWLAGGQQMVTASWDRTANLWDVETGE-----------------------------------  305 (481)
T ss_pred             eeeeeeeecccc-ceEehhhhcCcceeeeeeccccceeeeeccCc-----------------------------------
Confidence            357778999998 78899999999999999999999999998653                                   


Q ss_pred             CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997          265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~  344 (496)
                           ++..+.+|....+.++-+|.. .++++.+.|.+.++||+|.. .+.+..+++|...|+++.|+.  +..+++|+.
T Consensus       306 -----~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea-I~sV~VFQGHtdtVTS~vF~~--dd~vVSgSD  376 (481)
T KOG0300|consen  306 -----VVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA-IQSVAVFQGHTDTVTSVVFNT--DDRVVSGSD  376 (481)
T ss_pred             -----eeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhh-cceeeeecccccceeEEEEec--CCceeecCC
Confidence                 347788999999999999988 79999999999999999944 346778899999999999996  677899999


Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  424 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  424 (496)
                      |.+|++||++++.     .++.++. -.++++.++.+..++ ++|.--+++.|++||++...  +.         .-+-.
T Consensus       377 DrTvKvWdLrNMR-----splATIR-tdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~R--la---------RlPrt  438 (481)
T KOG0300|consen  377 DRTVKVWDLRNMR-----SPLATIR-TDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNR--LA---------RLPRT  438 (481)
T ss_pred             CceEEEeeecccc-----Ccceeee-cCCccceeEeecCCc-eEEeccCCceEEEEecCCCc--cc---------cCCcc
Confidence            9999999999985     7888887 477899999998777 78888888999999998631  11         11222


Q ss_pred             EecCCCCCcceEEecCCCC--cEEEEecCCCCCCCCCCeEEEeecC
Q 010997          425 QHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       425 ~~~~h~~~V~~~~~~p~~~--~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ...||...|.+++|..+-+  .|+        ++|-|..+.=|++.
T Consensus       439 sRqgHrRMV~c~AW~eehp~cnLf--------tcGFDR~v~gW~in  476 (481)
T KOG0300|consen  439 SRQGHRRMVTCCAWLEEHPACNLF--------TCGFDRMVAGWKIN  476 (481)
T ss_pred             cccccceeeeeeeccccCcccccc--------cccccceeeeeEec
Confidence            4579999999999986543  344        77888999999987

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.1e-27  Score=197.40  Aligned_cols=242  Identities=23%  Similarity=0.311  Sum_probs=187.3

Q ss_pred             EecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997          191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  270 (496)
Q Consensus       191 l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (496)
                      -..|.+ .|..+...-.|++|+||+.|++|+|+.++....                                     ..+
T Consensus         7 dt~H~D-~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-------------------------------------s~l   48 (299)
T KOG1332|consen    7 DTQHED-MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-------------------------------------SKL   48 (299)
T ss_pred             hhhhhh-hhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-------------------------------------cee
Confidence            456776 678888877899999999999999999975321                                     234


Q ss_pred             eeeeecCCCceeEEEEc-cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC-CcEEEEEcCCCcE
Q 010997          271 RGIYNGHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-DNLILTGSADNSV  348 (496)
Q Consensus       271 ~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~dg~i  348 (496)
                      +..+.+|.++|..++|. |.-+.+|++++.||.|.||.-..++.........|...|++|+|.|+. +-+||+++.||.|
T Consensus        49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v  128 (299)
T KOG1332|consen   49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV  128 (299)
T ss_pred             eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence            57899999999999995 444489999999999999999888765666677899999999999953 5688999999999


Q ss_pred             EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC---CC----------CEEEEEeCCCcEEEEECCCCCcccCCCCCC
Q 010997          349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KS----------SVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  415 (496)
Q Consensus       349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~---~~----------~llas~~~dg~i~iwd~~~~~~~~~~~~~~  415 (496)
                      .|++.+....   .........|.-.|++++|.|-   |.          +-|++|+.|..|+||+.... .        
T Consensus       129 svl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~--------  196 (299)
T KOG1332|consen  129 SVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-S--------  196 (299)
T ss_pred             EEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-c--------
Confidence            9999987411   2334455789999999999996   31          23789999999999999873 1        


Q ss_pred             CCCCCeeEEEecCCCCCcceEEecCCC---CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEe
Q 010997          416 TNYPAGLFFQHAGHRDKVVDFHWNASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC  492 (496)
Q Consensus       416 ~~~~~~~~~~~~~h~~~V~~~~~~p~~---~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~  492 (496)
                          -.+-..+.+|.+.|.+++|.|.-   ...+||||.|       |+|.||........-.   ...|+.+...+.++
T Consensus       197 ----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD-------g~viIwt~~~e~e~wk---~tll~~f~~~~w~v  262 (299)
T KOG1332|consen  197 ----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD-------GTVIIWTKDEEYEPWK---KTLLEEFPDVVWRV  262 (299)
T ss_pred             ----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC-------CcEEEEEecCccCccc---ccccccCCcceEEE
Confidence                12222378999999999999975   3467766665       9999999883221122   23344467888999


Q ss_pred             ccCC
Q 010997          493 TSKP  496 (496)
Q Consensus       493 ~~sP  496 (496)
                      .||+
T Consensus       263 SWS~  266 (299)
T KOG1332|consen  263 SWSL  266 (299)
T ss_pred             EEec
Confidence            8875

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=2.4e-27  Score=204.73  Aligned_cols=273  Identities=18%  Similarity=0.303  Sum_probs=219.8

Q ss_pred             CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997           94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ  173 (496)
Q Consensus        94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~  173 (496)
                      +|+.+..|.||+...-+-+-+    + +|.        ..-.+.-|..+|.|+.|+. +..+||+|+.||.|+||.+.++
T Consensus       230 sgSvDGFiEVWny~~GKlrKD----L-kYQ--------Aqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG  295 (508)
T KOG0275|consen  230 SGSVDGFIEVWNYTTGKLRKD----L-KYQ--------AQDNFMMMDDAVLCISFSR-DSEMLASGSQDGKIKVWRIETG  295 (508)
T ss_pred             eccccceeeeehhccchhhhh----h-hhh--------hhcceeecccceEEEeecc-cHHHhhccCcCCcEEEEEEecc
Confidence            567888888887653221100    0 011        1124567899999999999 8899999999999999999999


Q ss_pred             CCccccCCCCCCCCceEEe-cCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccC
Q 010997          174 PNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS  252 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~-~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (496)
                                  .++..+. .|+. .|+|+.|+.|+..+++++.|.++++.-+..+++                      
T Consensus       296 ------------~ClRrFdrAHtk-Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~----------------------  340 (508)
T KOG0275|consen  296 ------------QCLRRFDRAHTK-GVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC----------------------  340 (508)
T ss_pred             ------------hHHHHhhhhhcc-CeeEEEEccCcchhhcccccceEEEeccccchh----------------------
Confidence                        5555565 7887 699999999999999999999999998875543                      


Q ss_pred             CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec--cCCCCeEEEE
Q 010997          253 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVD  330 (496)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~  330 (496)
                                        +..+.+|++-|+...|.++| ..+++++.||+|++|+..+..  +..+++  +...+|+++-
T Consensus       341 ------------------LKEfrGHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~  399 (508)
T KOG0275|consen  341 ------------------LKEFRGHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVI  399 (508)
T ss_pred             ------------------HHHhcCccccccceEEcCCC-CeEEEecCCccEEEecCcchh--hhhhccCCCCcccceeEE
Confidence                              47788999999999999999 899999999999999999887  444433  4567899999


Q ss_pred             ecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997          331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  407 (496)
Q Consensus       331 ~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~  407 (496)
                      .-|.+...++++...++|.|.++.       ++.+++|..   ..+...+.+.||.|.+++ +.++|+.++.|.+.++  
T Consensus       400 ~~PKnpeh~iVCNrsntv~imn~q-------GQvVrsfsSGkREgGdFi~~~lSpkGewiY-cigED~vlYCF~~~sG--  469 (508)
T KOG0275|consen  400 LLPKNPEHFIVCNRSNTVYIMNMQ-------GQVVRSFSSGKREGGDFINAILSPKGEWIY-CIGEDGVLYCFSVLSG--  469 (508)
T ss_pred             EcCCCCceEEEEcCCCeEEEEecc-------ceEEeeeccCCccCCceEEEEecCCCcEEE-EEccCcEEEEEEeecC--
Confidence            999888999999999999999988       578888853   345677888999999865 7778999999999885  


Q ss_pred             ccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          408 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                                   .+-..+.-|...|..++-+|. ..++|+.++|       |.+++|..
T Consensus       470 -------------~LE~tl~VhEkdvIGl~HHPH-qNllAsYsED-------gllKLWkp  508 (508)
T KOG0275|consen  470 -------------KLERTLPVHEKDVIGLTHHPH-QNLLASYSED-------GLLKLWKP  508 (508)
T ss_pred             -------------ceeeeeecccccccccccCcc-cchhhhhccc-------chhhhcCC
Confidence                         344456678888999999995 4578877776       99999963

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9.6e-26  Score=193.68  Aligned_cols=280  Identities=19%  Similarity=0.353  Sum_probs=206.6

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceEEe
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSG  214 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~sg  214 (496)
                      .+|.+-|+++.|.+ .|+.+|||+.|++|+|||.....        .........+.|.+ .|..+.|.+-  |+.+|+|
T Consensus        10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s--------~~W~~Ts~Wrah~~-Si~rV~WAhPEfGqvvA~c   79 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDS--------GTWSCTSSWRAHDG-SIWRVVWAHPEFGQVVATC   79 (361)
T ss_pred             cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCC--------CceEEeeeEEecCC-cEEEEEecCccccceEEEE
Confidence            37889999999999 89999999999999999986552        23355567888988 6889999653  8899999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-Cce
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQE  293 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~  293 (496)
                      +.|+++.||.-.......                               .........++......|++|+|.|.. +-.
T Consensus        80 S~Drtv~iWEE~~~~~~~-------------------------------~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk  128 (361)
T KOG2445|consen   80 SYDRTVSIWEEQEKSEEA-------------------------------HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK  128 (361)
T ss_pred             ecCCceeeeeeccccccc-------------------------------ccceeEEEEEeecCCcceeEEEecchhcceE
Confidence            999999999753211100                               001223346677788999999999964 257


Q ss_pred             EEEEcCCCeEEEEEccCCCc----ccee-------eeccCCCCeEEEEecCC--CCcEEEEEcCC-----CcEEEEeCCC
Q 010997          294 FCSVGDDSCLILWDARVGTS----PVIK-------VEKAHDADLHCVDWNPL--DDNLILTGSAD-----NSVRMFDRRN  355 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~----~~~~-------~~~~~~~~v~~i~~sp~--~~~~l~sgs~d-----g~i~iwd~~~  355 (496)
                      +++++.||.|+||+.-..-.    ++..       ....+..+..|+.|+|.  ...+||.|+.+     +.+.||....
T Consensus       129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE  208 (361)
T ss_pred             EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence            99999999999998765321    1111       12246677889999983  35788988876     5789997665


Q ss_pred             CCCCCCCCCceEeccCCCCEEEEEEcCCC---CCEEEEEeCCCcEEEEECCCCCcccCCCC-----CCCCCCCeeEEEec
Q 010997          356 LTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGP-----RTTNYPAGLFFQHA  427 (496)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~~i~~l~~sp~~---~~llas~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~  427 (496)
                      ...  ....+.++.+|..+|+.++|.|+-   -++||+++.|| |+||.+.........+.     .....+.+++..+.
T Consensus       209 ~~r--Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~  285 (361)
T KOG2445|consen  209 NGR--KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD  285 (361)
T ss_pred             Ccc--eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence            220  144567788999999999999973   24889999999 99999986432222211     11235667788899


Q ss_pred             CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +|.+.|..+.|+-.|. +++       |.|.||.||+|...
T Consensus       286 ~H~~~VWrv~wNmtGt-iLs-------StGdDG~VRLWkan  318 (361)
T KOG2445|consen  286 DHNGEVWRVRWNMTGT-ILS-------STGDDGCVRLWKAN  318 (361)
T ss_pred             CCCCceEEEEEeeeee-EEe-------ecCCCceeeehhhh
Confidence            9999999999999775 444       55556999999876

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=3.1e-26  Score=205.18  Aligned_cols=249  Identities=15%  Similarity=0.219  Sum_probs=198.9

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .+.||.-.|+.+.|+| +...+++++.|..|+||.....            ........|.. +|+.+..+|.|.||+++
T Consensus       256 ~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~------------s~~~~~~~h~~-~V~~ls~h~tgeYllsA  321 (506)
T KOG0289|consen  256 TLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLS------------SEPTSSRPHEE-PVTGLSLHPTGEYLLSA  321 (506)
T ss_pred             hccCcceEEEEEEecc-chhheeecCCcceEEeeccccc------------cCccccccccc-cceeeeeccCCcEEEEe
Confidence            3458999999999999 8889999999999999998876            33456677887 79999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.||+..+.|++++.....                                      ..-....-.+++.+||||| .+|
T Consensus       322 s~d~~w~Fsd~~~g~~lt~--------------------------------------vs~~~s~v~~ts~~fHpDg-Lif  362 (506)
T KOG0289|consen  322 SNDGTWAFSDISSGSQLTV--------------------------------------VSDETSDVEYTSAAFHPDG-LIF  362 (506)
T ss_pred             cCCceEEEEEccCCcEEEE--------------------------------------EeeccccceeEEeeEcCCc-eEE
Confidence            9999999999987643210                                      0001122358999999999 899


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC-CC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-SA  373 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h-~~  373 (496)
                      .+|..||.|+|||+.++.  ....+.+|+++|..|+|+. +|.+||+++.|+.|++||+|.      .+.+.++.-. ..
T Consensus       363 gtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRK------l~n~kt~~l~~~~  433 (506)
T KOG0289|consen  363 GTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRK------LKNFKTIQLDEKK  433 (506)
T ss_pred             eccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehh------hcccceeeccccc
Confidence            999999999999999887  5677889999999999999 999999999999999999999      4445555422 23


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  453 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~  453 (496)
                      .|.++.|.+.|.+| +.++.|=.|++++-.+             .....+..+..|.+..+.+.|.....+++       
T Consensus       434 ~v~s~~fD~SGt~L-~~~g~~l~Vy~~~k~~-------------k~W~~~~~~~~~sg~st~v~Fg~~aq~l~-------  492 (506)
T KOG0289|consen  434 EVNSLSFDQSGTYL-GIAGSDLQVYICKKKT-------------KSWTEIKELADHSGLSTGVRFGEHAQYLA-------  492 (506)
T ss_pred             cceeEEEcCCCCeE-EeecceeEEEEEeccc-------------ccceeeehhhhcccccceeeecccceEEe-------
Confidence            79999999999975 5777775666665333             12345666777888889999988766554       


Q ss_pred             CCCCCCCeEEEeec
Q 010997          454 DSTGGGGTLQIWRM  467 (496)
Q Consensus       454 ~sgg~Dg~i~iw~~  467 (496)
                       ++|.|..++++.+
T Consensus       493 -s~smd~~l~~~a~  505 (506)
T KOG0289|consen  493 -STSMDAILRLYAL  505 (506)
T ss_pred             -eccchhheEEeec
Confidence             6777788888764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.2e-26  Score=207.75  Aligned_cols=237  Identities=19%  Similarity=0.306  Sum_probs=197.5

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      .+|...|.+++.+| ++++||+|+.|..|.||+.++.            .++..+.+|.+ .|.+++|-.....|++++.
T Consensus       199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~------------ehv~~~~ghr~-~V~~L~fr~gt~~lys~s~  264 (479)
T KOG0299|consen  199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTL------------EHVKVFKGHRG-AVSSLAFRKGTSELYSASA  264 (479)
T ss_pred             ccccceeEEEEEcC-CCcEEEecCCCceEEEecCccc------------chhhccccccc-ceeeeeeecCccceeeeec
Confidence            38999999999999 9999999999999999999998            77788999998 7999999988789999999


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      |++|++|+++..                                        ..+.++.+|.+.|.+|....-. ..+.+
T Consensus       265 Drsvkvw~~~~~----------------------------------------s~vetlyGHqd~v~~IdaL~re-R~vtV  303 (479)
T KOG0299|consen  265 DRSVKVWSIDQL----------------------------------------SYVETLYGHQDGVLGIDALSRE-RCVTV  303 (479)
T ss_pred             CCceEEEehhHh----------------------------------------HHHHHHhCCccceeeechhccc-ceEEe
Confidence            999999999743                                        2236778999999999887766 56666


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-c-----
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-G-----  370 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~-----  370 (496)
                      |+.|+++++|++....   ...+.++.+.+-|++|-  +...|++|+.+|.|.||++.+      .+++.+.. .     
T Consensus       304 GgrDrT~rlwKi~ees---qlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~K------Kkplf~~~~AHgv~~  372 (479)
T KOG0299|consen  304 GGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLK------KKPLFTSRLAHGVIP  372 (479)
T ss_pred             ccccceeEEEeccccc---eeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecc------cCceeEeeccccccC
Confidence            7799999999995544   44567899999999998  578899999999999999998      45555442 1     


Q ss_pred             ------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCc
Q 010997          371 ------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  444 (496)
Q Consensus       371 ------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~  444 (496)
                            +...|++|+..|... |+|+|+.+|.|++|-+..+-.           +..+++.+. -.+.|++++|+++|.+
T Consensus       373 ~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~~g~r-----------~i~~l~~ls-~~GfVNsl~f~~sgk~  439 (479)
T KOG0299|consen  373 ELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIEDGLR-----------AINLLYSLS-LVGFVNSLAFSNSGKR  439 (479)
T ss_pred             CccccccccceeeeEecccCc-eEEecCCCCceEEEEecCCcc-----------ccceeeecc-cccEEEEEEEccCCCE
Confidence                  223799999999887 789999999999999988522           224555554 5678999999999999


Q ss_pred             EEEEecCC
Q 010997          445 TVVSVSDD  452 (496)
Q Consensus       445 l~~s~s~d  452 (496)
                      ++|.++..
T Consensus       440 ivagiGkE  447 (479)
T KOG0299|consen  440 IVAGIGKE  447 (479)
T ss_pred             EEEecccc
Confidence            99877665

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.6e-26  Score=207.68  Aligned_cols=247  Identities=19%  Similarity=0.371  Sum_probs=201.3

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      +.+--+|.|.|++-+| +|.+|+.|+..|.|++|.+.++            ..+..+.+|-. .|+|+.|+.||.+|+||
T Consensus        76 q~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG------------~LL~v~~aHYQ-~ITcL~fs~dgs~iiTg  141 (476)
T KOG0646|consen   76 QYIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSG------------ILLNVLSAHYQ-SITCLKFSDDGSHIITG  141 (476)
T ss_pred             hhcccccceeeeecCC-CceEEEeecccCcEEEEEeccc------------cHHHHHHhhcc-ceeEEEEeCCCcEEEec
Confidence            4566789999999999 9999999999999999999999            67777889988 69999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-Cce
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQE  293 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~  293 (496)
                      |.||.|.+|++.+-...                               .+.....++..+..|.-+|+++...+.+ ...
T Consensus       142 skDg~V~vW~l~~lv~a-------------------------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~r  190 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSA-------------------------------DNDHSVKPLHIFSDHTLSITDLQIGSGGTNAR  190 (476)
T ss_pred             CCCccEEEEEEEeeccc-------------------------------ccCCCccceeeeccCcceeEEEEecCCCccce
Confidence            99999999998642110                               0112567789999999999999997753 248


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC----------CCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN----------GVGS  363 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~----------~~~~  363 (496)
                      ++|+|.|.++++||+..+.  ++... .....+++++.+| .+..+..|+.+|.|.+.++......          ..+.
T Consensus       191 l~TaS~D~t~k~wdlS~g~--LLlti-~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t  266 (476)
T KOG0646|consen  191 LYTASEDRTIKLWDLSLGV--LLLTI-TFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT  266 (476)
T ss_pred             EEEecCCceEEEEEeccce--eeEEE-ecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence            9999999999999999987  44443 5678999999999 8999999999999999998775411          1234


Q ss_pred             CceEeccCCC--CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          364 PINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       364 ~~~~~~~h~~--~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      .+..+.+|.+  +|+|++.+-||. +|++|+.||.|+|||+...               +++.++....++|+.+.+.|-
T Consensus       267 ~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~---------------Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  267 QINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSK---------------QCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             eeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchH---------------HHHHHHhhhccccceeEeecc
Confidence            5667788988  999999999998 6789999999999999874               344444435677888888665


Q ss_pred             CCcEE
Q 010997          442 DPWTV  446 (496)
Q Consensus       442 ~~~l~  446 (496)
                      .+..+
T Consensus       331 ~~~~~  335 (476)
T KOG0646|consen  331 ERGII  335 (476)
T ss_pred             cccee
Confidence            44333

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=4.1e-26  Score=215.93  Aligned_cols=329  Identities=16%  Similarity=0.252  Sum_probs=247.8

Q ss_pred             ChhHhHhhhhCcCCCCcceEeccCC-cccCCCcceEEEEEEeecCCCCCCeEEEEEEeccC-------cchhhhcccccc
Q 010997           51 VPVLYDWLANHNLVWPSLSCRWGPQ-LEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVK-------PRVAAAEHISQF  122 (496)
Q Consensus        51 ~~~ly~~~~~~~~~wps~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-------~~~~~~~~~~~~  122 (496)
                      ....|.++++....|   .++-+|. +..   ...+.|--+.++..+.+++|++|+++.-.       +++.+......|
T Consensus       359 vgk~~s~lyHS~ciW---~Ve~~p~nv~~---~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y  432 (1080)
T KOG1408|consen  359 VGKCSSMLYHSACIW---DVENLPCNVHS---PTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPY  432 (1080)
T ss_pred             ccceeeeeeccceee---eeccccccccC---cccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCcc
Confidence            455899999999999   6776663 222   22355666777888999999999987621       111111100011


Q ss_pred             Ccc-------cCCcccc--eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec
Q 010997          123 NEE-------ARSPFVK--KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG  193 (496)
Q Consensus       123 ~~~-------~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~  193 (496)
                      ...       ...+.+.  ...+..-.-.|.+++.+| +++.||+|..-|+++||++...            +....+..
T Consensus       433 ~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l------------~~~~~~eA  499 (1080)
T KOG1408|consen  433 EDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQEL------------EYTCFMEA  499 (1080)
T ss_pred             ccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhh------------hhhhheec
Confidence            111       1112221  223445567899999999 9999999999999999999887            56677889


Q ss_pred             CCCCcceeeeecCC---CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997          194 HQDNAEFALAMCPT---EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  270 (496)
Q Consensus       194 h~~~~v~~l~~~p~---~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (496)
                      |.. .|.||.|+.-   .++|+++++|+-|.|+|+..                                       ...+
T Consensus       500 Hes-EilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r---------------------------------------ny~l  539 (1080)
T KOG1408|consen  500 HES-EILCLEYSFPVLTNKLLASASRDRLIHVYDVKR---------------------------------------NYDL  539 (1080)
T ss_pred             ccc-eeEEEeecCchhhhHhhhhccCCceEEEEeccc---------------------------------------ccch
Confidence            988 6999999853   46899999999999999863                                       3345


Q ss_pred             eeeeecCCCceeEEEEccCC-CceEEEEcCCCeEEEEEccCCCccceee---eccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997          271 RGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDDNLILTGSADN  346 (496)
Q Consensus       271 ~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~i~~sp~~~~~l~sgs~dg  346 (496)
                      ++++.+|...|+++.|...| ...+++++.|..|.+--.+......+..   .......++.++..| +..++++++.|.
T Consensus       540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDr  618 (1080)
T KOG1408|consen  540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDR  618 (1080)
T ss_pred             hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEeccc
Confidence            57889999999999997765 3468899999887664333221111111   112235789999999 899999999999


Q ss_pred             cEEEEeCCCCCCCCCCCCceEecc---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEG---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  423 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~---h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  423 (496)
                      .|+|||+.+      ++....|++   |.+....+...|.|-| +|+.+.|.++.++|+..+               +++
T Consensus       619 nirif~i~s------gKq~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~Df~sg---------------Ecv  676 (1080)
T KOG1408|consen  619 NIRIFDIES------GKQVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFVDFVSG---------------ECV  676 (1080)
T ss_pred             ceEEEeccc------cceeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEEEeccc---------------hhh
Confidence            999999999      888888864   6678889999999997 578888999999999885               677


Q ss_pred             EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      ....||...|+.+.|.++-..+|        +.+.||.|.||.+..
T Consensus       677 A~m~GHsE~VTG~kF~nDCkHlI--------SvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  677 AQMTGHSEAVTGVKFLNDCKHLI--------SVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hhhcCcchheeeeeecccchhhe--------eecCCceEEEEECch
Confidence            78899999999999999988877        555679999999984

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.94  E-value=6.5e-25  Score=187.10  Aligned_cols=304  Identities=21%  Similarity=0.354  Sum_probs=220.5

Q ss_pred             CcCCCCcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCC
Q 010997           61 HNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHP  140 (496)
Q Consensus        61 ~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  140 (496)
                      +.-.||-+...|.-.     .+.+.||.+|+.... -.|.+.|..+..     ...             .+.....+.|+
T Consensus        41 Y~ap~~lya~~Ws~~-----~~~~~rla~gS~~Ee-~~Nkvqiv~ld~-----~s~-------------e~~~~a~fd~~   96 (364)
T KOG0290|consen   41 YNAPWPLYAMNWSVR-----PDKKFRLAVGSFIEE-YNNKVQIVQLDE-----DSG-------------ELVEDANFDHP   96 (364)
T ss_pred             ecCCCceeeeccccC-----CCcceeEEEeeeccc-cCCeeEEEEEcc-----CCC-------------ceeccCCCCCC
Confidence            456689999999754     233479999987654 457777766531     000             11122337899


Q ss_pred             CceeEEEecCCC----CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe----cCCCCcceeeeecCC-CCce
Q 010997          141 GEVNRIRELPQN----TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT----GHQDNAEFALAMCPT-EPYV  211 (496)
Q Consensus       141 ~~V~~l~~~p~~----~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~----~h~~~~v~~l~~~p~-~~~l  211 (496)
                      -+++.+.|.|+.    +++|||.+.  .+++|.+.......        .+...+.    .+-..++++..|+.- -++|
T Consensus        97 YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~--------~~~~~L~~~kns~~~aPlTSFDWne~dp~~i  166 (364)
T KOG0290|consen   97 YPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRV--------ELQSVLNNNKNSEFCAPLTSFDWNEVDPNLI  166 (364)
T ss_pred             CCccceEecCCccccCcchhhcccC--eEEEEeccCcCCce--------ehhhhhccCcccccCCcccccccccCCccee
Confidence            999999999932    367887654  89999998542221        1122222    222337899999874 5588


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      .+++-|-+..|||++++..                                     ......+-.|..+|.+++|...+.
T Consensus       167 gtSSiDTTCTiWdie~~~~-------------------------------------~~vkTQLIAHDKEV~DIaf~~~s~  209 (364)
T KOG0290|consen  167 GTSSIDTTCTIWDIETGVS-------------------------------------GTVKTQLIAHDKEVYDIAFLKGSR  209 (364)
T ss_pred             EeecccCeEEEEEEeeccc-------------------------------------cceeeEEEecCcceeEEEeccCcc
Confidence            8999999999999987521                                     111255778999999999999888


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccC-CCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEec
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      ++|+++|.||.|++||+|......+...... ..+...++|++++.+++|+-..| ..|.|.|+|.+     ..++..++
T Consensus       210 ~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-----~tpva~L~  284 (364)
T KOG0290|consen  210 DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-----CTPVARLR  284 (364)
T ss_pred             ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-----Ccceehhh
Confidence            8999999999999999998762222221222 57889999999899999997766 47999999986     48899999


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      +|.+.|+.++|.|.....++|+++|..+.|||+.....+..       ..+.+.+.   -.+.|+.++|++..+.-++.|
T Consensus       285 ~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~-------~dPilay~---a~~EVNqi~Ws~~~~Dwiai~  354 (364)
T KOG0290|consen  285 NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG-------EDPILAYT---AGGEVNQIQWSSSQPDWIAIC  354 (364)
T ss_pred             cCcccccceEecCCCCceeeecCCcceEEEEecccccccCC-------CCchhhhh---ccceeeeeeecccCCCEEEEE
Confidence            99999999999999888899999999999999988644111       11222222   345799999998766666555


Q ss_pred             c
Q 010997          450 S  450 (496)
Q Consensus       450 s  450 (496)
                      .
T Consensus       355 ~  355 (364)
T KOG0290|consen  355 F  355 (364)
T ss_pred             e
Confidence            4

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=4e-27  Score=223.26  Aligned_cols=232  Identities=20%  Similarity=0.384  Sum_probs=205.9

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      +...|...|.|+..-. ..+.+++|+.|-.+-+|.+...            .++..|.+|.. +|.+|.|++...+|++|
T Consensus        23 ~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp------------~~i~S~~~hes-pIeSl~f~~~E~Llaag   88 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKP------------NAITSLTGHES-PIESLTFDTSERLLAAG   88 (825)
T ss_pred             hhhhhhhhhceeeeec-cceeeccCCCceeeccccccCC------------chhheeeccCC-cceeeecCcchhhhccc
Confidence            4567999999999844 7889999999999999998876            56667899998 79999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.+|+|++||++...                                        .++.+.+|...+..+.|+|.+ .++
T Consensus        89 sasgtiK~wDleeAk----------------------------------------~vrtLtgh~~~~~sv~f~P~~-~~~  127 (825)
T KOG0267|consen   89 SASGTIKVWDLEEAK----------------------------------------IVRTLTGHLLNITSVDFHPYG-EFF  127 (825)
T ss_pred             ccCCceeeeehhhhh----------------------------------------hhhhhhccccCcceeeeccce-EEe
Confidence            999999999998543                                        236788999999999999999 788


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      ++|+.|+.+++||++...  +.+.+.+|...|.++.|+| +|.+++.|+.|.+++|||+..      +..+..|..|.+.
T Consensus       128 a~gStdtd~~iwD~Rk~G--c~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~a------gk~~~ef~~~e~~  198 (825)
T KOG0267|consen  128 ASGSTDTDLKIWDIRKKG--CSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTA------GKLSKEFKSHEGK  198 (825)
T ss_pred             ccccccccceehhhhccC--ceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccc------ccccccccccccc
Confidence            999999999999999766  6788888999999999999 999999999999999999998      8999999999999


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~  446 (496)
                      |..+.|+|..- ++++|+.|++|++||+++.               +++.........|.+.+|+|++..++
T Consensus       199 v~sle~hp~e~-Lla~Gs~d~tv~f~dletf---------------e~I~s~~~~~~~v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  199 VQSLEFHPLEV-LLAPGSSDRTVRFWDLETF---------------EVISSGKPETDGVRSLAFNPDGKIVL  254 (825)
T ss_pred             ccccccCchhh-hhccCCCCceeeeecccee---------------EEeeccCCccCCceeeeecCCceeee
Confidence            99999999875 7899999999999999974               55665666677899999999886544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6.5e-26  Score=212.70  Aligned_cols=284  Identities=20%  Similarity=0.284  Sum_probs=216.4

Q ss_pred             CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997           94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ  173 (496)
Q Consensus        94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~  173 (496)
                      +|+.+..|.+|+......             +...|  -..+...|.+.|+.+.... +++.|++++.|-+|++|+....
T Consensus        42 TgGRDg~i~~W~~~~d~~-------------~~s~~--~~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~  105 (735)
T KOG0308|consen   42 TGGRDGIIRLWSVTQDSN-------------EPSTP--YIASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKD  105 (735)
T ss_pred             ecCCCceEEEeccccccC-------------Ccccc--hhhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccC
Confidence            345788899998653221             00011  1334557999999999888 8889999999999999999876


Q ss_pred             CCccccCCCCCCCCceEEecCCCCcceeeee-cCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccC
Q 010997          174 PNRHAVLGATNSRPDLILTGHQDNAEFALAM-CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS  252 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~-~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (496)
                      .          .-+..+++.|.+ -|.|+++ .++...+||||-|+.|.+||++++........                
T Consensus       106 ~----------~~c~stir~H~D-YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~----------------  158 (735)
T KOG0308|consen  106 N----------TFCMSTIRTHKD-YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF----------------  158 (735)
T ss_pred             c----------chhHhhhhcccc-hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc----------------
Confidence            1          245567889998 7999999 77888999999999999999997633111100                


Q ss_pred             CCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEe
Q 010997          253 PKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW  331 (496)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~  331 (496)
                                    .......+. ++...|++++.++.+ .+|++|+..+.|++||.++.+  .+..+.+|...|.++..
T Consensus       159 --------------n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~--kimkLrGHTdNVr~ll~  221 (735)
T KOG0308|consen  159 --------------NNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK--KIMKLRGHTDNVRVLLV  221 (735)
T ss_pred             --------------cccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc--ceeeeeccccceEEEEE
Confidence                          000112222 788999999999998 899999999999999999988  56667799999999999


Q ss_pred             cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997          332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  411 (496)
Q Consensus       332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~  411 (496)
                      ++ +|..++++++||+|++||+..      .+++.++..|...|.++..+|+-..+ .+|+.||.|..=|++...+.   
T Consensus       222 ~d-DGt~~ls~sSDgtIrlWdLgq------QrCl~T~~vH~e~VWaL~~~~sf~~v-YsG~rd~~i~~Tdl~n~~~~---  290 (735)
T KOG0308|consen  222 ND-DGTRLLSASSDGTIRLWDLGQ------QRCLATYIVHKEGVWALQSSPSFTHV-YSGGRDGNIYRTDLRNPAKS---  290 (735)
T ss_pred             cC-CCCeEeecCCCceEEeeeccc------cceeeeEEeccCceEEEeeCCCcceE-EecCCCCcEEecccCCchhh---
Confidence            99 999999999999999999999      79999999999999999999998865 59999999999999885221   


Q ss_pred             CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                               .+++   ....+|..+..+.....+=        ++..|+.|+-|...
T Consensus       291 ---------tlic---k~daPv~~l~~~~~~~~~W--------vtTtds~I~rW~~~  327 (735)
T KOG0308|consen  291 ---------TLIC---KEDAPVLKLHLHEHDNSVW--------VTTTDSSIKRWKLE  327 (735)
T ss_pred             ---------eEee---cCCCchhhhhhccccCCce--------eeeccccceecCCc
Confidence                     2222   2234566666654333322        22345777777665

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=9.3e-26  Score=192.55  Aligned_cols=234  Identities=24%  Similarity=0.417  Sum_probs=179.7

Q ss_pred             ecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997          192 TGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  270 (496)
Q Consensus       192 ~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (496)
                      +.|.+ .|++|...+. |+|+++|+.||.|.+||+++.........            +             .+....-.
T Consensus        40 r~HgG-svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l------------i-------------~k~~c~v~   93 (397)
T KOG4283|consen   40 RPHGG-SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL------------I-------------AKHKCIVA   93 (397)
T ss_pred             ccCCC-ccceeeeccccceEEeecCCCccEEEEEeccccchhhccc------------e-------------eheeeecc
Confidence            34555 6899999885 88999999999999999986431110000            0             00000001


Q ss_pred             eeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC--CCcEEEEEcCCCcE
Q 010997          271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSADNSV  348 (496)
Q Consensus       271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~dg~i  348 (496)
                      ...-.+|.-.|.++.|-|.+..+|.+++.|.++++||..+.+  ....+ ..++.|++-+++|-  ..-++|+|..|-.|
T Consensus        94 ~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ--~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~V  170 (397)
T KOG4283|consen   94 KQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ--EAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQV  170 (397)
T ss_pred             ccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce--eeEEe-ecCceeehhhcChhhhcceEEEEecCCCcE
Confidence            123357889999999999877899999999999999998877  34444 56788999999883  24578999999999


Q ss_pred             EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCccc-CCCCCCCCCCCeeEEEec
Q 010997          349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV-EQGPRTTNYPAGLFFQHA  427 (496)
Q Consensus       349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~  427 (496)
                      ++-|+.+      +..-+++.+|...|.+|.|+|...++||+|+.||.|++||++...... ..+.... ..+..+....
T Consensus       171 rLCDi~S------Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k~~p~~~~n~  243 (397)
T KOG4283|consen  171 RLCDIAS------GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-KRPPILKTNT  243 (397)
T ss_pred             EEEeccC------CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-ccCccccccc
Confidence            9999999      899999999999999999999999999999999999999999863322 2222221 2223333567


Q ss_pred             CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .|.+.|+.++|..++.+++        +.|.|..+++|+...
T Consensus       244 ah~gkvngla~tSd~~~l~--------~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  244 AHYGKVNGLAWTSDARYLA--------SCGTDDRIRVWNMES  277 (397)
T ss_pred             cccceeeeeeecccchhhh--------hccCccceEEeeccc
Confidence            8999999999999999877        777789999999874

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=2.8e-26  Score=197.05  Aligned_cols=226  Identities=19%  Similarity=0.344  Sum_probs=173.9

Q ss_pred             ceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997          188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  267 (496)
Q Consensus       188 ~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (496)
                      ...+..|.. ++.+.+|+|||.++++|+.|.+|+|.|++......  .+....                     ..+...
T Consensus       105 t~ylt~HK~-~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~~~em~---------------------~~~~qa  160 (430)
T KOG0640|consen  105 TKYLTSHKS-PCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--KPKEMI---------------------SGDTQA  160 (430)
T ss_pred             eEEEeeccc-ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--chhhhc---------------------cCCccc
Confidence            346778887 78999999999999999999999999998432211  000000                     000111


Q ss_pred             c-CCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997          268 V-GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN  346 (496)
Q Consensus       268 ~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg  346 (496)
                      . ..++++-.|.++|+++.|+|.. .+|++|+.|++|+++|+................+|.++.|+| .|.+|+.|..-.
T Consensus       161 ~hPvIRTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-sGefllvgTdHp  238 (430)
T KOG0640|consen  161 RHPVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-SGEFLLVGTDHP  238 (430)
T ss_pred             CCceEeehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-CCceEEEecCCC
Confidence            1 2357888999999999999998 899999999999999997654211112224567899999999 999999999999


Q ss_pred             cEEEEeCCCCCCCCCCCCceEe---ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997          347 SVRMFDRRNLTSNGVGSPINKF---EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  423 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~---~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  423 (496)
                      ++++||+.+      .++...-   .+|++.|+++.+++.+. |+++|+.||.|+|||--.. ++              +
T Consensus       239 ~~rlYdv~T------~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~-rC--------------v  296 (430)
T KOG0640|consen  239 TLRLYDVNT------YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSN-RC--------------V  296 (430)
T ss_pred             ceeEEeccc------eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccH-HH--------------H
Confidence            999999998      4444332   56999999999999998 7899999999999997663 22              1


Q ss_pred             EEe-cCCC-CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          424 FQH-AGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       424 ~~~-~~h~-~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      ..+ ..|. ..|.+..|..++.+++        |.|.|..+++|.+..
T Consensus       297 ~t~~~AH~gsevcSa~Ftkn~kyiL--------sSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  297 RTIGNAHGGSEVCSAVFTKNGKYIL--------SSGKDSTVKLWEIST  336 (430)
T ss_pred             HHHHhhcCCceeeeEEEccCCeEEe--------ecCCcceeeeeeecC
Confidence            111 2344 3688999999999988        888899999999983

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=3e-26  Score=208.70  Aligned_cols=272  Identities=20%  Similarity=0.360  Sum_probs=214.7

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecC-CCCcceeeeecCCCCc
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCPTEPY  210 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h-~~~~v~~l~~~p~~~~  210 (496)
                      +.+.++.|..-|.++..+. ..+.+.||+. |.|+|||+....++         .|+..|..- .++-|.++.+.|||+.
T Consensus       411 rq~~tL~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k---------~PvsqLdcl~rdnyiRSckL~pdgrt  479 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNK---------SPVSQLDCLNRDNYIRSCKLLPDGRT  479 (705)
T ss_pred             HhhhhhccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCC---------CccccccccCcccceeeeEecCCCce
Confidence            4567789999999999888 6678889876 79999999876433         233333322 2346889999999999


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      |++|+.-.++.|||+.......                                      ...+..-.-.+.+++.+||.
T Consensus       480 LivGGeastlsiWDLAapTpri--------------------------------------kaeltssapaCyALa~spDa  521 (705)
T KOG0639|consen  480 LIVGGEASTLSIWDLAAPTPRI--------------------------------------KAELTSSAPACYALAISPDA  521 (705)
T ss_pred             EEeccccceeeeeeccCCCcch--------------------------------------hhhcCCcchhhhhhhcCCcc
Confidence            9999999999999997543211                                      12223333467889999998


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                       ++.++|+.||.|.|||+++..  .+..+.+|.+.+.||.+++ ++..|-||+.|.+||.||+|.      +..+.... 
T Consensus       522 -kvcFsccsdGnI~vwDLhnq~--~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlre------grqlqqhd-  590 (705)
T KOG0639|consen  522 -KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLRE------GRQLQQHD-  590 (705)
T ss_pred             -ceeeeeccCCcEEEEEcccce--eeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhh------hhhhhhhh-
Confidence             789999999999999999887  7889999999999999999 999999999999999999998      55555443 


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      ..+.|.++..+|++.++ |.|-+++.+-|-.....                -.+.+.-|.+-|.++.|.+.|.|++    
T Consensus       591 F~SQIfSLg~cP~~dWl-avGMens~vevlh~skp----------------~kyqlhlheScVLSlKFa~cGkwfv----  649 (705)
T KOG0639|consen  591 FSSQIFSLGYCPTGDWL-AVGMENSNVEVLHTSKP----------------EKYQLHLHESCVLSLKFAYCGKWFV----  649 (705)
T ss_pred             hhhhheecccCCCccce-eeecccCcEEEEecCCc----------------cceeecccccEEEEEEecccCceee----
Confidence            46789999999999985 68988998888777663                2334567889999999999999988    


Q ss_pred             CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                          |.|.|+.+..|...      .|..+...+ -..+|++|+.|
T Consensus       650 ----StGkDnlLnawrtP------yGasiFqsk-E~SsVlsCDIS  683 (705)
T KOG0639|consen  650 ----STGKDNLLNAWRTP------YGASIFQSK-ESSSVLSCDIS  683 (705)
T ss_pred             ----ecCchhhhhhccCc------cccceeecc-ccCcceeeeec
Confidence                78888999999987      455444444 24567776654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.3e-23  Score=181.90  Aligned_cols=240  Identities=20%  Similarity=0.293  Sum_probs=188.1

Q ss_pred             CCCceeEEEecCCCCcEEEEEeC--CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      +.-.|..++|..... .++.++.  |.+|+.-++.+.            +.+..+.||.. .|.+|+.+|-+..++|++.
T Consensus        55 kkyG~~~~~Fth~~~-~~i~sStk~d~tIryLsl~dN------------kylRYF~GH~~-~V~sL~~sP~~d~FlS~S~  120 (311)
T KOG1446|consen   55 KKYGVDLACFTHHSN-TVIHSSTKEDDTIRYLSLHDN------------KYLRYFPGHKK-RVNSLSVSPKDDTFLSSSL  120 (311)
T ss_pred             ccccccEEEEecCCc-eEEEccCCCCCceEEEEeecC------------ceEEEcCCCCc-eEEEEEecCCCCeEEeccc
Confidence            344688888877444 4444444  789999999988            78899999998 7999999999999999999


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      |++|++||++...+.                                        ..+  +...-..++|.|+| -+||+
T Consensus       121 D~tvrLWDlR~~~cq----------------------------------------g~l--~~~~~pi~AfDp~G-LifA~  157 (311)
T KOG1446|consen  121 DKTVRLWDLRVKKCQ----------------------------------------GLL--NLSGRPIAAFDPEG-LIFAL  157 (311)
T ss_pred             CCeEEeeEecCCCCc----------------------------------------eEE--ecCCCcceeECCCC-cEEEE
Confidence            999999999854332                                        111  11223456899999 78888


Q ss_pred             EcCCCeEEEEEccCCCccceeeec---cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      +.....|++||+|.-......++.   +.....+.|.|+| +|.+|+.++..+.+++.|.-.      |....++..+..
T Consensus       158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~------G~~~~tfs~~~~  230 (311)
T KOG1446|consen  158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFD------GTVKSTFSGYPN  230 (311)
T ss_pred             ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccC------CcEeeeEeeccC
Confidence            888889999999987533333332   3467899999999 999999999999999999988      888888887654


Q ss_pred             CE---EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecCCCCcEEEEe
Q 010997          374 AV---LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       374 ~i---~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      .-   ....|+|+++++| +|+.||+|++|+++++               ..+..+.+ +..++.++.|+|.. .++||+
T Consensus       231 ~~~~~~~a~ftPds~Fvl-~gs~dg~i~vw~~~tg---------------~~v~~~~~~~~~~~~~~~fnP~~-~mf~sa  293 (311)
T KOG1446|consen  231 AGNLPLSATFTPDSKFVL-SGSDDGTIHVWNLETG---------------KKVAVLRGPNGGPVSCVRFNPRY-AMFVSA  293 (311)
T ss_pred             CCCcceeEEECCCCcEEE-EecCCCcEEEEEcCCC---------------cEeeEecCCCCCCccccccCCce-eeeeec
Confidence            32   6889999999755 9999999999999875               34445556 78899999999954 455554


Q ss_pred             cCCCCCCCCCCeEEEeecC
Q 010997          450 SDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +         ..+-+|=+.
T Consensus       294 ~---------s~l~fw~p~  303 (311)
T KOG1446|consen  294 S---------SNLVFWLPD  303 (311)
T ss_pred             C---------ceEEEEecc
Confidence            4         578999776

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=3e-25  Score=209.82  Aligned_cols=257  Identities=19%  Similarity=0.347  Sum_probs=206.2

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCccee-eeecC-CCCceE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA-LAMCP-TEPYVL  212 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~-l~~~p-~~~~l~  212 (496)
                      ...+|...|..+++.+  +-.+++++.||++++|+-...          +......+.+|.+- |.. +++-+ ++..|+
T Consensus         9 ~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~----------~~l~~~~~~~~~g~-i~~~i~y~e~~~~~l~   75 (745)
T KOG0301|consen    9 ELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGK----------QYLETHAFEGPKGF-IANSICYAESDKGRLV   75 (745)
T ss_pred             EeccCccchheeEecC--CeEEeecCCCCceeeeeccCc----------ccccceecccCcce-eeccceeccccCcceE
Confidence            4568999999988765  347889999999999997655          22334567778773 444 77775 344799


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.|++|.+|...+                                        ..|+..+.+|...|.++....++ .
T Consensus        76 ~g~~D~~i~v~~~~~----------------------------------------~~P~~~LkgH~snVC~ls~~~~~-~  114 (745)
T KOG0301|consen   76 VGGMDTTIIVFKLSQ----------------------------------------AEPLYTLKGHKSNVCSLSIGEDG-T  114 (745)
T ss_pred             eecccceEEEEecCC----------------------------------------CCchhhhhccccceeeeecCCcC-c
Confidence            999999999998763                                        34568899999999999987777 3


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                       +++||.|.++++|-...    +.....+|...|.+++.-| .+ .++||+.|.+|++|.-.        +.+.+|.+|.
T Consensus       115 -~iSgSWD~TakvW~~~~----l~~~l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~~--------~~l~tf~gHt  179 (745)
T KOG0301|consen  115 -LISGSWDSTAKVWRIGE----LVYSLQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKGG--------TLLKTFSGHT  179 (745)
T ss_pred             -eEecccccceEEecchh----hhcccCCcchheeeeeecC-CC-cEEeccCcceeeeccCC--------chhhhhccch
Confidence             99999999999997644    3455789999999999998 44 89999999999999753        6889999999


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      ..|..+++-|++.  |+|++.||.|++|++..                +.+..+.||+.-|++++..+++ .+++||++|
T Consensus       180 D~VRgL~vl~~~~--flScsNDg~Ir~w~~~g----------------e~l~~~~ghtn~vYsis~~~~~-~~Ivs~gED  240 (745)
T KOG0301|consen  180 DCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG----------------EVLLEMHGHTNFVYSISMALSD-GLIVSTGED  240 (745)
T ss_pred             hheeeeEEecCCC--eEeecCCceEEEEeccC----------------ceeeeeeccceEEEEEEecCCC-CeEEEecCC
Confidence            9999999999976  45999999999999955                5788899999999999966644 467766665


Q ss_pred             CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997          453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  494 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~  494 (496)
                             ++++||+..        ++.+.+.-....|+++.+
T Consensus       241 -------rtlriW~~~--------e~~q~I~lPttsiWsa~~  267 (745)
T KOG0301|consen  241 -------RTLRIWKKD--------ECVQVITLPTTSIWSAKV  267 (745)
T ss_pred             -------ceEEEeecC--------ceEEEEecCccceEEEEE
Confidence                   999999886        455555555556666654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=9e-25  Score=206.61  Aligned_cols=241  Identities=19%  Similarity=0.306  Sum_probs=199.2

Q ss_pred             ceEEEecCCCceeE-EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          132 KKHKTIIHPGEVNR-IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       132 ~~~~~~~h~~~V~~-l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      +.+...+|.+-|.+ ++|.+.++-.+++|+.|.+|.+|.+...            .|..+|.||.. -|.+++...++. 
T Consensus        49 ~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~------------~P~~~LkgH~s-nVC~ls~~~~~~-  114 (745)
T KOG0301|consen   49 ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA------------EPLYTLKGHKS-NVCSLSIGEDGT-  114 (745)
T ss_pred             cceecccCcceeeccceeccccCcceEeecccceEEEEecCCC------------Cchhhhhcccc-ceeeeecCCcCc-
Confidence            34456678888888 8888756667999999999999999888            88899999998 588998877776 


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      ++|||.|.++++|-....                                          ...+.+|...|+++..-|++
T Consensus       115 ~iSgSWD~TakvW~~~~l------------------------------------------~~~l~gH~asVWAv~~l~e~  152 (745)
T KOG0301|consen  115 LISGSWDSTAKVWRIGEL------------------------------------------VYSLQGHTASVWAVASLPEN  152 (745)
T ss_pred             eEecccccceEEecchhh------------------------------------------hcccCCcchheeeeeecCCC
Confidence            999999999999987532                                          24478999999999999987


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                        .++|||.|.+|++|.-  ++  ...++.+|.+.|..+++-+  ...|++++.||.|++|++.       +..+.++.+
T Consensus       153 --~~vTgsaDKtIklWk~--~~--~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~Ir~w~~~-------ge~l~~~~g  217 (745)
T KOG0301|consen  153 --TYVTGSADKTIKLWKG--GT--LLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSIRLWDLD-------GEVLLEMHG  217 (745)
T ss_pred             --cEEeccCcceeeeccC--Cc--hhhhhccchhheeeeEEec--CCCeEeecCCceEEEEecc-------Cceeeeeec
Confidence              7999999999999975  33  6778889999999999987  5678999999999999995       689999999


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      |+.-|+++...+++. +++|+++|++++||+....                 .....-....|+++.+-++|. ++    
T Consensus       218 htn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~e~-----------------~q~I~lPttsiWsa~~L~NgD-Iv----  274 (745)
T KOG0301|consen  218 HTNFVYSISMALSDG-LIVSTGEDRTLRIWKKDEC-----------------VQVITLPTTSIWSAKVLLNGD-IV----  274 (745)
T ss_pred             cceEEEEEEecCCCC-eEEEecCCceEEEeecCce-----------------EEEEecCccceEEEEEeeCCC-EE----
Confidence            999999999666666 5789999999999997632                 222222234788888888665 45    


Q ss_pred             CCCCCCCCCCeEEEeecCCC
Q 010997          451 DDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~  470 (496)
                          +||.||.||||.....
T Consensus       275 ----vg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  275 ----VGGSDGRVRVFTVDKD  290 (745)
T ss_pred             ----EeccCceEEEEEeccc
Confidence                5666799999998754

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=9.4e-25  Score=204.55  Aligned_cols=278  Identities=19%  Similarity=0.312  Sum_probs=202.8

Q ss_pred             EEecC--CCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEE
Q 010997          146 IRELP--QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW  223 (496)
Q Consensus       146 l~~~p--~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iw  223 (496)
                      ..|++  ....+||.+..||.|.++|........      ..+.......|.+ +|+.+.|-|....|++++.|.++++|
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~------ee~~lk~~~aH~n-AifDl~wapge~~lVsasGDsT~r~W  127 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL------EERQLKKPLAHKN-AIFDLKWAPGESLLVSASGDSTIRPW  127 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcch------hhhhhcccccccc-eeEeeccCCCceeEEEccCCceeeee
Confidence            45554  456799999999999999988763220      1122345677887 79999999966689999999999999


Q ss_pred             ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeE
Q 010997          224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL  303 (496)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  303 (496)
                      |+.+.....                                      ...+.+|.+.|.+++|+|.++..|++|+.||.|
T Consensus       128 dvk~s~l~G--------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~i  169 (720)
T KOG0321|consen  128 DVKTSRLVG--------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEI  169 (720)
T ss_pred             eeccceeec--------------------------------------ceeecccccccchhhhccCCCcceeeccCCCcE
Confidence            998654321                                      135789999999999999999999999999999


Q ss_pred             EEEEccCCCc----------------------c---ceeeeccCCCCeEE---EEecCCCCcEEEEEcC-CCcEEEEeCC
Q 010997          304 ILWDARVGTS----------------------P---VIKVEKAHDADLHC---VDWNPLDDNLILTGSA-DNSVRMFDRR  354 (496)
Q Consensus       304 ~iwd~~~~~~----------------------~---~~~~~~~~~~~v~~---i~~sp~~~~~l~sgs~-dg~i~iwd~~  354 (496)
                      .|||+|....                      +   .+....++...|.+   +.+.. |...||+++. |+.|++||+|
T Consensus       170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLR  248 (720)
T KOG0321|consen  170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLR  248 (720)
T ss_pred             EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeec
Confidence            9999985431                      0   01111234444444   44445 7889999888 9999999999


Q ss_pred             CCCCCCCCCCceE--eccC---CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997          355 NLTSNGVGSPINK--FEGH---SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  429 (496)
Q Consensus       355 ~~~~~~~~~~~~~--~~~h---~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h  429 (496)
                      .........+...  +..|   ...+.++.....|.++||+|. |+.|++|++...+.             ..++.+.|+
T Consensus       249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~-------------sP~~~~sg~  314 (720)
T KOG0321|consen  249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSI-------------SPVAEFSGK  314 (720)
T ss_pred             ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCc-------------CchhhccCc
Confidence            8654332333322  3333   346788888888999998887 99999999988432             233334444


Q ss_pred             CCC--cceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          430 RDK--VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       430 ~~~--V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ...  -..-..+|++.+++        ||+.|...++|.+..     .......+.+|.-.|++|+|.|
T Consensus       315 ~~~sf~vks~lSpd~~~l~--------SgSsd~~ayiw~vs~-----~e~~~~~l~Ght~eVt~V~w~p  370 (720)
T KOG0321|consen  315 LNSSFYVKSELSPDDCSLL--------SGSSDEQAYIWVVSS-----PEAPPALLLGHTREVTTVRWLP  370 (720)
T ss_pred             ccceeeeeeecCCCCceEe--------ccCCCcceeeeeecC-----ccCChhhhhCcceEEEEEeecc
Confidence            321  11234678888877        888889999999995     3566788899999999999987

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=2e-24  Score=184.43  Aligned_cols=303  Identities=17%  Similarity=0.222  Sum_probs=214.5

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCC---ceEEecCCCCcceeeeecCC-CCceE
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP---DLILTGHQDNAEFALAMCPT-EPYVL  212 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~l~~h~~~~v~~l~~~p~-~~~l~  212 (496)
                      ..|.|.|+.+...+..++++++|+.||.|.|||++.........-.....+   ...-.+|.- .|..+.|-|- ...+.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky-~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKY-AISSAIWYPIDTGMFT  118 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCcccee-eeeeeEEeeecCceee
Confidence            369999999999999999999999999999999987642211000000011   111235555 6889999995 45888


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCC----CCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAG----SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      +++.|.++++||.++.+....+.........    -...-.....+..+..+.+.++..+...+++.+|.+.|.++.|+|
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP  198 (397)
T ss_pred             cccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence            9999999999999987654433332221111    111112233455667788899999999999999999999999999


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCC-------------ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGT-------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~  355 (496)
                      ..+.+|++|+.||.|++||+|...             .|......+|.+.|+.++|.. ++.++++.+.|..+++|+..+
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhccCccceEEeeccc
Confidence            998899999999999999998642             233333457889999999999 999999999999999999887


Q ss_pred             CCCCC--CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc
Q 010997          356 LTSNG--VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  433 (496)
Q Consensus       356 ~~~~~--~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  433 (496)
                      .....  .+..++.-+.| -.+. +. +.+.. +|+---.++.+.++++-.+               ..+..+.+|...|
T Consensus       278 G~ntl~~~g~~~~n~~~~-~~~~-~~-~~~s~-vfv~~p~~~~lall~~~sg---------------s~ir~l~~h~k~i  338 (397)
T KOG4283|consen  278 GRNTLREFGPIIHNQTTS-FAVH-IQ-SMDSD-VFVLFPNDGSLALLNLLEG---------------SFVRRLSTHLKRI  338 (397)
T ss_pred             Cccccccccccccccccc-ceEE-Ee-ecccc-eEEEEecCCeEEEEEccCc---------------eEEEeeeccccee
Confidence            43210  01111111111 1111 22 22333 3433444688888888764               5666778888889


Q ss_pred             ceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          434 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       434 ~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .+.++-|+-....        +|..|+.|..|-+.
T Consensus       339 ~c~~~~~~fq~~~--------tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  339 NCAAYRPDFEQCF--------TGDMNGNIYMWSPA  365 (397)
T ss_pred             eEEeecCchhhhh--------ccccCCcccccccc
Confidence            9999999877777        88899999999884

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=3.6e-24  Score=200.66  Aligned_cols=308  Identities=19%  Similarity=0.311  Sum_probs=204.7

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ce
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YV  211 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l  211 (496)
                      ....+.|.++|..+.|.| ....|++++.|.++++||+.....          .-...+.||+. .|.+++|.|.+. .|
T Consensus        93 lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l----------~G~~~~~GH~~-SvkS~cf~~~n~~vF  160 (720)
T KOG0321|consen   93 LKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRL----------VGGRLNLGHTG-SVKSECFMPTNPAVF  160 (720)
T ss_pred             hcccccccceeEeeccCC-CceeEEEccCCceeeeeeecccee----------ecceeeccccc-ccchhhhccCCCcce
Confidence            345678999999999999 888999999999999999998721          11224889998 689999999865 78


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE---EEEcc
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED---VTFCP  288 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~---l~~~~  288 (496)
                      ++|++||.|.|||++-....................  ...           .....+.+.....+...|.+   +.+..
T Consensus       161 ~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~--ptp-----------skp~~kr~~k~kA~s~ti~ssvTvv~fk  227 (720)
T KOG0321|consen  161 CTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA--PTP-----------SKPLKKRIRKWKAASNTIFSSVTVVLFK  227 (720)
T ss_pred             eeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC--CCC-----------CchhhccccccccccCceeeeeEEEEEe
Confidence            999999999999997543111000000000000000  000           00001111222234444443   44445


Q ss_pred             CCCceEEEEcC-CCeEEEEEccCCCccc------eeeeccC---CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          289 SSAQEFCSVGD-DSCLILWDARVGTSPV------IKVEKAH---DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       289 ~~~~~l~s~~~-dg~i~iwd~~~~~~~~------~~~~~~~---~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      |. ..|++++. |+.|++||+|......      ...+.-|   ...+.++..+. .|.+|.+.+.|+.|.+||++... 
T Consensus       228 De-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~s-  304 (720)
T KOG0321|consen  228 DE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSLS-  304 (720)
T ss_pred             cc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEeccccC-
Confidence            55 67888887 9999999999865211      1111122   34677888877 67777666679999999999876 


Q ss_pred             CCCCCCceEeccCCCC--EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997          359 NGVGSPINKFEGHSAA--VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  436 (496)
Q Consensus       359 ~~~~~~~~~~~~h~~~--i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  436 (496)
                         ..++..+.++...  -..-..+|++.++ ++|+.|....+|.+....              .....+.||.-.|+.+
T Consensus       305 ---~sP~~~~sg~~~~sf~vks~lSpd~~~l-~SgSsd~~ayiw~vs~~e--------------~~~~~l~Ght~eVt~V  366 (720)
T KOG0321|consen  305 ---ISPVAEFSGKLNSSFYVKSELSPDDCSL-LSGSSDEQAYIWVVSSPE--------------APPALLLGHTREVTTV  366 (720)
T ss_pred             ---cCchhhccCcccceeeeeeecCCCCceE-eccCCCcceeeeeecCcc--------------CChhhhhCcceEEEEE
Confidence               4566666655432  1233568999975 699999999999998742              2233467999999999


Q ss_pred             EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC--------chHHHHHHHhccceEEEec
Q 010997          437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP--------QDEVLAELEKFKAHVISCT  493 (496)
Q Consensus       437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~--------~~~~~~~l~~h~~~v~~~~  493 (496)
                      +|.|....-+++|++|       .+++||++.+.+...        ......++++|.-.+..+.
T Consensus       367 ~w~pS~~t~v~TcSdD-------~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~  424 (720)
T KOG0321|consen  367 RWLPSATTPVATCSDD-------FRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVN  424 (720)
T ss_pred             eeccccCCCceeeccC-------cceEEEeccCchhhccccccchhhhhhhhhhhcccccccccc
Confidence            9999877778887776       999999997553321        2345566677765554443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=8.8e-25  Score=192.62  Aligned_cols=230  Identities=18%  Similarity=0.363  Sum_probs=178.8

Q ss_pred             EEecCCCCcceeeeecCCCC--ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997          190 ILTGHQDNAEFALAMCPTEP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  267 (496)
Q Consensus       190 ~l~~h~~~~v~~l~~~p~~~--~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (496)
                      ...+|.+ .++-+.-.+-++  +.++=+..|.|.||++...........                        .......
T Consensus       146 ~~i~h~g-~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~------------------------~~~~~s~  200 (440)
T KOG0302|consen  146 KSIPHYG-GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPG------------------------LEVKDSE  200 (440)
T ss_pred             ccccccc-ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcc------------------------ccccccc
Confidence            3445665 567777666544  666667899999999975432211110                        0001145


Q ss_pred             cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc-eeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADN  346 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg  346 (496)
                      .+++.++.+|...=..++|+|.....+++|..-+.|++|...++.... ...+.+|+..|-.++|||....+||+||.||
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg  280 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG  280 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence            678899999999999999999654569999889999999998876321 2234579999999999998789999999999


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  426 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  426 (496)
                      +|+|||+|...    .+.....+.|.+.|+.|.|+.... +||+|+.||+++|||++..            ...+.+..+
T Consensus       281 sIrIWDiRs~~----~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~------------~~~~pVA~f  343 (440)
T KOG0302|consen  281 SIRIWDIRSGP----KKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQF------------KSGQPVATF  343 (440)
T ss_pred             eEEEEEecCCC----ccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhc------------cCCCcceeE
Confidence            99999999842    233444588999999999999888 7899999999999999986            333567778


Q ss_pred             cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .-|..+|+++.|+|....+++++       |.|+.|.|||++
T Consensus       344 k~Hk~pItsieW~p~e~s~iaas-------g~D~QitiWDls  378 (440)
T KOG0302|consen  344 KYHKAPITSIEWHPHEDSVIAAS-------GEDNQITIWDLS  378 (440)
T ss_pred             EeccCCeeEEEeccccCceEEec-------cCCCcEEEEEee
Confidence            88999999999999988888754       445999999997

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.8e-24  Score=185.28  Aligned_cols=280  Identities=13%  Similarity=0.161  Sum_probs=206.0

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..++.|.. -+|+.|++ .|.+||.|+.||.|.|||+.+.            .+-..+.+|.. +|.+++|+++|+.|+|
T Consensus        18 ~~tld~~~-a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~------------~iar~lsaH~~-pi~sl~WS~dgr~Llt   82 (405)
T KOG1273|consen   18 THTLDNPL-AECCQFSR-WGDYLAVGCANGRVVIYDFDTF------------RIARMLSAHVR-PITSLCWSRDGRKLLT   82 (405)
T ss_pred             ceeccCCc-cceEEecc-CcceeeeeccCCcEEEEEcccc------------chhhhhhcccc-ceeEEEecCCCCEeee
Confidence            34455555 89999999 9999999999999999999988            55668889998 8999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      +|.|..|.+||+..+..                                        ++.+ ....+|+.+.|+|...+.
T Consensus        83 sS~D~si~lwDl~~gs~----------------------------------------l~ri-rf~spv~~~q~hp~k~n~  121 (405)
T KOG1273|consen   83 SSRDWSIKLWDLLKGSP----------------------------------------LKRI-RFDSPVWGAQWHPRKRNK  121 (405)
T ss_pred             ecCCceeEEEeccCCCc----------------------------------------eeEE-EccCccceeeeccccCCe
Confidence            99999999999986532                                        1222 246789999999988777


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeec--cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      ++++-.+..-.+-++..+...++-.-.  .......+..|.+ .|.++++|...|.+.++|..+      .+++..++-.
T Consensus       122 ~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t------~e~vas~rit  194 (405)
T KOG1273|consen  122 CVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAET------LECVASFRIT  194 (405)
T ss_pred             EEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecch------heeeeeeeec
Confidence            777666666666666543311111100  0111223446888 899999999999999999999      6788888766


Q ss_pred             C-CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC--CCCCcceEEecCCCCcEEEE
Q 010997          372 S-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       372 ~-~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~p~~~~l~~s  448 (496)
                      . ..|.++.|+..|++ |+.-+.|+.|+.|+++....+-.      ....++...+..  ....-.+++|+.+|.+++|+
T Consensus       195 s~~~IK~I~~s~~g~~-liiNtsDRvIR~ye~~di~~~~r------~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~  267 (405)
T KOG1273|consen  195 SVQAIKQIIVSRKGRF-LIINTSDRVIRTYEISDIDDEGR------DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG  267 (405)
T ss_pred             hheeeeEEEEeccCcE-EEEecCCceEEEEehhhhcccCc------cCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence            5 78999999999996 56888899999999874311100      011111111110  11234578899999998876


Q ss_pred             ecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc-ceEEEeccCC
Q 010997          449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK-AHVISCTSKP  496 (496)
Q Consensus       449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~-~~v~~~~~sP  496 (496)
                      .+.       -..++||.-.      .|.+++.|.|.+ ....+++|+|
T Consensus       268 s~~-------aHaLYIWE~~------~GsLVKILhG~kgE~l~DV~whp  303 (405)
T KOG1273|consen  268 SAR-------AHALYIWEKS------IGSLVKILHGTKGEELLDVNWHP  303 (405)
T ss_pred             ccc-------ceeEEEEecC------CcceeeeecCCchhheeeccccc
Confidence            543       4899999998      788999998888 4577888887

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3.7e-24  Score=193.80  Aligned_cols=267  Identities=13%  Similarity=0.245  Sum_probs=206.7

Q ss_pred             cEEEEE-eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997          154 KIVATH-TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  232 (496)
Q Consensus       154 ~~lat~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~  232 (496)
                      .+++++ .....|.+|.+.......         ....++    ++|.+++-+|+|.+|+.|+..|.|.+|.+.++..  
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~---------q~~v~P----g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L--  115 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVV---------QYIVLP----GPVHALASSNLGYFLLAGTISGNLYLWELSSGIL--  115 (476)
T ss_pred             hheeeecccCccccccccCchhhhh---------hhcccc----cceeeeecCCCceEEEeecccCcEEEEEeccccH--
Confidence            344444 345589999988762111         011122    2689999999999999998999999999987644  


Q ss_pred             cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC-
Q 010997          233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-  311 (496)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-  311 (496)
                                                            +..+..|-..|+++.|+-++ .+|+|||.||.|++|++..- 
T Consensus       116 --------------------------------------L~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen  116 --------------------------------------LNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             --------------------------------------HHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeec
Confidence                                                  35667899999999999998 79999999999999987431 


Q ss_pred             ------CccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC
Q 010997          312 ------TSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK  384 (496)
Q Consensus       312 ------~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~  384 (496)
                            .......+..|.-+|+.+...+. ...+|+|+|.|.++++||+..      +..+.++. ....+.+++.+|-+
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~LLlti~-fp~si~av~lDpae  229 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GVLLLTIT-FPSSIKAVALDPAE  229 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ceeeEEEe-cCCcceeEEEcccc
Confidence                  22346677899999999998772 357899999999999999998      77777776 57789999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCcccC-CCCCCCCCCCeeEEEecCCCC--CcceEEecCCCCcEEEEecCCCCCCCCCCe
Q 010997          385 SSVFGSSAEDGLLNIWDYEKVGKKVE-QGPRTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGT  461 (496)
Q Consensus       385 ~~llas~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~--~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~  461 (496)
                      ..+ ..|+.+|.|.+.++........ ............+..+.||.+  .|++++.+-+|..|+        ||+.||.
T Consensus       230 ~~~-yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl--------SGd~dg~  300 (476)
T KOG0646|consen  230 RVV-YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL--------SGDEDGK  300 (476)
T ss_pred             cEE-EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE--------eeCCCCC
Confidence            865 4899999999999876431110 001111122345666789998  999999999887666        7777899


Q ss_pred             EEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          462 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       462 i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      |+|||+.      +.++++++....++|+-+.+.|
T Consensus       301 VcvWdi~------S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  301 VCVWDIY------SKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             EEEEecc------hHHHHHHHhhhccccceeEeec
Confidence            9999999      8999999998889999888744

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.1e-23  Score=181.72  Aligned_cols=296  Identities=17%  Similarity=0.235  Sum_probs=202.1

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCc-eEEe-cCCCCcceeeeecCCCC-ce
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPD-LILT-GHQDNAEFALAMCPTEP-YV  211 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~l~-~h~~~~v~~l~~~p~~~-~l  211 (496)
                      .+.+|.++|++++|+. +|+.|||++.|++|+||++.....+.-       +++ ..++ +|    -+.+.|.||-+ .+
T Consensus        81 ~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eH-------r~~R~nve~dh----pT~V~FapDc~s~v  148 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEH-------RCIRQNVEYDH----PTRVVFAPDCKSVV  148 (420)
T ss_pred             hhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhh-------hHhhccccCCC----ceEEEECCCcceEE
Confidence            4458999999999999 999999999999999999987532211       111 1111 23    26889999966 66


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      +++-...++++|.+...........                            .........-..|+-.|-++-....+ 
T Consensus       149 v~~~~g~~l~vyk~~K~~dG~~~~~----------------------------~v~~D~~~f~~kh~v~~i~iGiA~~~-  199 (420)
T KOG2096|consen  149 VSVKRGNKLCVYKLVKKTDGSGSHH----------------------------FVHIDNLEFERKHQVDIINIGIAGNA-  199 (420)
T ss_pred             EEEccCCEEEEEEeeecccCCCCcc----------------------------cccccccccchhcccceEEEeecCCc-
Confidence            6777778999998764322000000                            00000011223466667677666555 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC--CCCCceEec
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--VGSPINKFE  369 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~~~~~~~  369 (496)
                      .++++++.|..|.||+++ ++  .+.........-+..+.+| +|+++|+++-.-.|++|.+--...+.  ....+..++
T Consensus       200 k~imsas~dt~i~lw~lk-Gq--~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk  275 (420)
T KOG2096|consen  200 KYIMSASLDTKICLWDLK-GQ--LLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK  275 (420)
T ss_pred             eEEEEecCCCcEEEEecC-Cc--eeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence            899999999999999998 55  4555545555667788999 99999999999999999865322211  134567889


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC-CCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s  448 (496)
                      +|...|..++|+|+... +++.+.||.++|||+.-.-+. ..++.. ..++   .+.+..-..++ .+..+|++..|++|
T Consensus       276 GH~saV~~~aFsn~S~r-~vtvSkDG~wriwdtdVrY~~-~qDpk~Lk~g~---~pl~aag~~p~-RL~lsP~g~~lA~s  349 (420)
T KOG2096|consen  276 GHQSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTDVRYEA-GQDPKILKEGS---APLHAAGSEPV-RLELSPSGDSLAVS  349 (420)
T ss_pred             cchhheeeeeeCCCcce-eEEEecCCcEEEeeccceEec-CCCchHhhcCC---cchhhcCCCce-EEEeCCCCcEEEee
Confidence            99999999999999986 469999999999998753111 111100 0011   11111122233 89999999887776


Q ss_pred             ecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEeccCC
Q 010997          449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSKP  496 (496)
Q Consensus       449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~sP  496 (496)
                      .+         ..|+++..+      .++...++ ..|.+.|.+++|+|
T Consensus       350 ~g---------s~l~~~~se------~g~~~~~~e~~h~~~Is~is~~~  383 (420)
T KOG2096|consen  350 FG---------SDLKVFASE------DGKDYPELEDIHSTTISSISYSS  383 (420)
T ss_pred             cC---------CceEEEEcc------cCccchhHHHhhcCceeeEEecC
Confidence            55         469999888      45555555 46889999999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=205.01  Aligned_cols=261  Identities=18%  Similarity=0.340  Sum_probs=204.5

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      .+|++.-+.|+|.| ++.+|.+++.||.|++|+......          .|.. +..+.. .|.+++-  .+++|++|+.
T Consensus        10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e----------~P~t-i~~~g~-~v~~ia~--~s~~f~~~s~   74 (933)
T KOG1274|consen   10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEE----------EPET-IDISGE-LVSSIAC--YSNHFLTGSE   74 (933)
T ss_pred             hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCccc----------CCch-hhccCc-eeEEEee--cccceEEeec
Confidence            58999999999999 888999999999999999876621          1111 111433 4666655  5669999999


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      +++|.++.+..+...                                        ..+....-++++++|+.+| .+++.
T Consensus        75 ~~tv~~y~fps~~~~----------------------------------------~iL~Rftlp~r~~~v~g~g-~~iaa  113 (933)
T KOG1274|consen   75 QNTVLRYKFPSGEED----------------------------------------TILARFTLPIRDLAVSGSG-KMIAA  113 (933)
T ss_pred             cceEEEeeCCCCCcc----------------------------------------ceeeeeeccceEEEEecCC-cEEEe
Confidence            999999998754321                                        2445566789999999998 79999


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc------
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG------  370 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~------  370 (496)
                      ||+|-.|++-++....  ....+.+|..+|.++.|+| .+++||+.+.||.|++||+.+      +....++.+      
T Consensus       114 gsdD~~vK~~~~~D~s--~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~------~~~~~tl~~v~k~n~  184 (933)
T KOG1274|consen  114 GSDDTAVKLLNLDDSS--QEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQD------GILSKTLTGVDKDNE  184 (933)
T ss_pred             ecCceeEEEEeccccc--hheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEccc------chhhhhcccCCcccc
Confidence            9999999999998877  6777889999999999999 999999999999999999998      555555432      


Q ss_pred             --CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe--cCCCCCcceEEecCCCCcEE
Q 010997          371 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH--AGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       371 --h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~~~~~p~~~~l~  446 (496)
                        ....+..++|+|++..+ +..+.|+.|++|+...+               ...+.+  ..|...+.+++|+|+|.|++
T Consensus       185 ~~~s~i~~~~aW~Pk~g~l-a~~~~d~~Vkvy~r~~w---------------e~~f~Lr~~~~ss~~~~~~wsPnG~YiA  248 (933)
T KOG1274|consen  185 FILSRICTRLAWHPKGGTL-AVPPVDNTVKVYSRKGW---------------ELQFKLRDKLSSSKFSDLQWSPNGKYIA  248 (933)
T ss_pred             ccccceeeeeeecCCCCeE-EeeccCCeEEEEccCCc---------------eeheeecccccccceEEEEEcCCCcEEe
Confidence              14567889999998765 46667999999999885               233333  23445599999999999877


Q ss_pred             EEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          447 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                              +++.||.|.|||..      +   +.+ ......|.+++|.|
T Consensus       249 --------As~~~g~I~vWnv~------t---~~~-~~~~~~Vc~~aw~p  280 (933)
T KOG1274|consen  249 --------ASTLDGQILVWNVD------T---HER-HEFKRAVCCEAWKP  280 (933)
T ss_pred             --------eeccCCcEEEEecc------c---chh-ccccceeEEEecCC
Confidence                    56678999999998      3   111 33456899999987

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=4e-26  Score=216.52  Aligned_cols=243  Identities=21%  Similarity=0.392  Sum_probs=204.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccC
Q 010997          155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT  234 (496)
Q Consensus       155 ~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~  234 (496)
                      +++....+-.++|||....                  ..|.. .|.++..-..++.+++|+.|-.+-+|.+....     
T Consensus         6 ~~m~~~~~t~Lr~~~~~~~------------------~~hsa-av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-----   61 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTREF------------------VAHSA-AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-----   61 (825)
T ss_pred             ccceeeeeeccccccchhh------------------hhhhh-hhceeeeeccceeeccCCCceeeccccccCCc-----
Confidence            3444445556778877543                  35665 57777776667899999999999999886422     


Q ss_pred             CccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc
Q 010997          235 DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP  314 (496)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  314 (496)
                                                         .+..|.+|..+|.++.|++.. .+|++|+.+|+|++||+...+  
T Consensus        62 -----------------------------------~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk--  103 (825)
T KOG0267|consen   62 -----------------------------------AITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK--  103 (825)
T ss_pred             -----------------------------------hhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhh--
Confidence                                               224588999999999999987 789999999999999999887  


Q ss_pred             ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997          315 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  394 (496)
Q Consensus       315 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d  394 (496)
                      .++++.+|...+.++.|+| -+.++|+|+.|+.+++||++.      ..+.+.+.+|...|..+.|+|+|++ ++++++|
T Consensus       104 ~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk------~Gc~~~~~s~~~vv~~l~lsP~Gr~-v~~g~ed  175 (825)
T KOG0267|consen  104 IVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK------KGCSHTYKSHTRVVDVLRLSPDGRW-VASGGED  175 (825)
T ss_pred             hhhhhhccccCcceeeecc-ceEEeccccccccceehhhhc------cCceeeecCCcceeEEEeecCCCce-eeccCCc
Confidence            6778889999999999999 789999999999999999998      6899999999999999999999996 6899999


Q ss_pred             CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC
Q 010997          395 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  474 (496)
Q Consensus       395 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~  474 (496)
                      ..++|||+..+               .++..+.+|...|..+.|+|. .++++       +||.|++|++||+.      
T Consensus       176 ~tvki~d~~ag---------------k~~~ef~~~e~~v~sle~hp~-e~Lla-------~Gs~d~tv~f~dle------  226 (825)
T KOG0267|consen  176 NTVKIWDLTAG---------------KLSKEFKSHEGKVQSLEFHPL-EVLLA-------PGSSDRTVRFWDLE------  226 (825)
T ss_pred             ceeeeeccccc---------------ccccccccccccccccccCch-hhhhc-------cCCCCceeeeeccc------
Confidence            99999999875               566678899999999999995 45665       77778999999999      


Q ss_pred             chHHHHHHHhccceEEEeccCC
Q 010997          475 QDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       475 ~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +-+.+...+.....|.+++|.|
T Consensus       227 tfe~I~s~~~~~~~v~~~~fn~  248 (825)
T KOG0267|consen  227 TFEVISSGKPETDGVRSLAFNP  248 (825)
T ss_pred             eeEEeeccCCccCCceeeeecC
Confidence            5666777777788899999876

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=6.1e-25  Score=219.22  Aligned_cols=259  Identities=17%  Similarity=0.377  Sum_probs=203.8

Q ss_pred             CCCceeEEEecCCCCc---EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEe
Q 010997          139 HPGEVNRIRELPQNTK---IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSG  214 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~---~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg  214 (496)
                      -...-++++|.+....   +||.|..||.|.+||.......      .....+.....|++ .|.+|.|++... +||+|
T Consensus        63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~------~~~~~la~~~~h~G-~V~gLDfN~~q~nlLASG  135 (1049)
T KOG0307|consen   63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN------ASEEVLATKSKHTG-PVLGLDFNPFQGNLLASG  135 (1049)
T ss_pred             ccccceeeeecccCCCccceeeccccCCceEEecchhhccC------cchHHHhhhcccCC-ceeeeeccccCCceeecc
Confidence            3445688999884443   6999999999999998774111      12245567788988 799999999854 99999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.||.|.|||+.+........                                      -....+.|.+++|+..-..+|
T Consensus       136 a~~geI~iWDlnn~~tP~~~~--------------------------------------~~~~~~eI~~lsWNrkvqhIL  177 (1049)
T KOG0307|consen  136 ADDGEILIWDLNKPETPFTPG--------------------------------------SQAPPSEIKCLSWNRKVSHIL  177 (1049)
T ss_pred             CCCCcEEEeccCCcCCCCCCC--------------------------------------CCCCcccceEeccchhhhHHh
Confidence            999999999998643321110                                      112356899999998877899


Q ss_pred             EEEcCCCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCCCceEecc
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      ++++.+|.+.|||+|..+ +.+.. .......+..++|+|.+...|++++.|.   .|.+||+|...     .+++.+++
T Consensus       178 AS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-----sP~k~~~~  251 (1049)
T KOG0307|consen  178 ASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-----SPLKILEG  251 (1049)
T ss_pred             hccCCCCCceeccccCCC-cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-----Cchhhhcc
Confidence            999999999999999886 23322 2222345789999996667777777664   79999999864     78889999


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      |...|.++.|++.+..+++|++.|++|.+|+..+.               +.+..+....+.+.++.|+|..+.+++.++
T Consensus       252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---------------Evl~~~p~~~nW~fdv~w~pr~P~~~A~as  316 (1049)
T KOG0307|consen  252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---------------EVLGELPAQGNWCFDVQWCPRNPSVMAAAS  316 (1049)
T ss_pred             cccceeeeccCCCCchhhhcccCCCCeeEecCCCc---------------eEeeecCCCCcceeeeeecCCCcchhhhhe
Confidence            99999999999998778889999999999999985               567777777789999999999998888665


Q ss_pred             CCCCCCCCCCeEEEeecCCC
Q 010997          451 DDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      -|       |.|.|+.+...
T Consensus       317 fd-------gkI~I~sl~~~  329 (1049)
T KOG0307|consen  317 FD-------GKISIYSLQGT  329 (1049)
T ss_pred             ec-------cceeeeeeecC
Confidence            55       99999999754

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=5.5e-24  Score=192.17  Aligned_cols=263  Identities=16%  Similarity=0.228  Sum_probs=192.3

Q ss_pred             ecCCCceeEEEecCCCC-cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEe
Q 010997          137 IIHPGEVNRIRELPQNT-KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSG  214 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~-~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg  214 (496)
                      ..|.+.|++++|+|... +++|+|..-|+|-+||+.+...        ...-+..+..|.. +|.+|.|+|.+. .+++.
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--------d~d~v~~f~~hs~-~Vs~l~F~P~n~s~i~ss  253 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--------DKDGVYLFTPHSG-PVSGLKFSPANTSQIYSS  253 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--------ccCceEEeccCCc-cccceEecCCChhheeee
Confidence            45889999999999655 8999999999999999964321        1234567788887 799999999754 89999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      |.||+|++-|+++......                                      ..+..-...+.++.|+.+. ..+
T Consensus       254 SyDGtiR~~D~~~~i~e~v--------------------------------------~s~~~d~~~fs~~d~~~e~-~~v  294 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNISEEV--------------------------------------LSLDTDNIWFSSLDFSAES-RSV  294 (498)
T ss_pred             ccCceeeeeeecchhhHHH--------------------------------------hhcCccceeeeeccccCCC-ccE
Confidence            9999999999987543221                                      1111234456788888877 456


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      +.+..=|...+||+|+.... ...+.-|...|+.|+++|....+|||++.|++++|||+|++....  .++.....|...
T Consensus       295 l~~~~~G~f~~iD~R~~~s~-~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~--sp~lst~~Hrrs  371 (498)
T KOG4328|consen  295 LFGDNVGNFNVIDLRTDGSE-YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA--SPFLSTLPHRRS  371 (498)
T ss_pred             EEeecccceEEEEeecCCcc-chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC--Ccceecccccce
Confidence            66666679999999998743 334457888999999999889999999999999999999976422  134445569999


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC-C--CcceEEecCCCCcEEEEecC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-D--KVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~--~V~~~~~~p~~~~l~~s~s~  451 (496)
                      |.+..|||.+.. |+|.+.|..|+|||..-.+..         .++.....|.... .  ......|.|+.. +++.+  
T Consensus       372 V~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~---------~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg--  438 (498)
T KOG4328|consen  372 VNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAK---------DEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVG--  438 (498)
T ss_pred             eeeeEEcCCCCc-eEeeccCCceEEeeccccccc---------CCccceeeccCcccccccchhheeCCCcc-EEEEe--
Confidence            999999999988 568889999999998521111         1122222232211 2  234568999655 45433  


Q ss_pred             CCCCCCCCCeEEEeecC
Q 010997          452 DCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~  468 (496)
                           ..-..|-|+|-.
T Consensus       439 -----~~~r~IDv~~~~  450 (498)
T KOG4328|consen  439 -----RYPRPIDVFDGN  450 (498)
T ss_pred             -----ccCcceeEEcCC
Confidence                 334678888887

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=1e-24  Score=216.66  Aligned_cols=251  Identities=22%  Similarity=0.395  Sum_probs=196.7

Q ss_pred             EEecCCCCcceeeeecCCCCceEEec--CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997          190 ILTGHQDNAEFALAMCPTEPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  267 (496)
Q Consensus       190 ~l~~h~~~~v~~l~~~p~~~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (496)
                      .+-+|.+..|++++.+|++..++||+  .||.++||+.+.-....                            ...+..-
T Consensus         7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~----------------------------~~~~~~l   58 (942)
T KOG0973|consen    7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK----------------------------EEKNENL   58 (942)
T ss_pred             cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchh----------------------------hhhhccc
Confidence            45577777899999999999999999  99999999976321100                            0011112


Q ss_pred             cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccC------C----------CccceeeeccCCCCeEEEEe
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV------G----------TSPVIKVEKAHDADLHCVDW  331 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~------~----------~~~~~~~~~~~~~~v~~i~~  331 (496)
                      ...+.....|.+.|+|+.|+|+| .+||+|++|+.|.||....      .          .......+.+|...|..++|
T Consensus        59 ~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W  137 (942)
T KOG0973|consen   59 PKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW  137 (942)
T ss_pred             chhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc
Confidence            34556778899999999999999 7999999999999999873      0          01245667899999999999


Q ss_pred             cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997          332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  411 (496)
Q Consensus       332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~  411 (496)
                      +| ++.+||+++.|++|.|||.++      ...+..+++|.+.|-.+.|.|-|+| ||+-+.|++|+||++...+-+...
T Consensus       138 sp-~~~~lvS~s~DnsViiwn~~t------F~~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~dw~i~k~I  209 (942)
T KOG0973|consen  138 SP-DDSLLVSVSLDNSVIIWNAKT------FELLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKVWRTSDWGIEKSI  209 (942)
T ss_pred             CC-CccEEEEecccceEEEEcccc------ceeeeeeecccccccceEECCccCe-eeeecCCceEEEEEcccceeeEee
Confidence            99 999999999999999999999      7889999999999999999999996 689999999999998775332211


Q ss_pred             CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEE
Q 010997          412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS  491 (496)
Q Consensus       412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~  491 (496)
                      .         -.|...+-......+.|+|+|.++++.-+    .-+.-.++.|.+-.      +...-..|-||.+++..
T Consensus       210 t---------~pf~~~~~~T~f~RlSWSPDG~~las~nA----~n~~~~~~~IieR~------tWk~~~~LvGH~~p~ev  270 (942)
T KOG0973|consen  210 T---------KPFEESPLTTFFLRLSWSPDGHHLASPNA----VNGGKSTIAIIERG------TWKVDKDLVGHSAPVEV  270 (942)
T ss_pred             c---------cchhhCCCcceeeecccCCCcCeecchhh----ccCCcceeEEEecC------CceeeeeeecCCCceEE
Confidence            1         01111222345788999999988765444    44555678887765      56666788999999999


Q ss_pred             eccCC
Q 010997          492 CTSKP  496 (496)
Q Consensus       492 ~~~sP  496 (496)
                      ++|+|
T Consensus       271 vrFnP  275 (942)
T KOG0973|consen  271 VRFNP  275 (942)
T ss_pred             EEeCh
Confidence            99998

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=8.8e-23  Score=192.28  Aligned_cols=263  Identities=10%  Similarity=0.110  Sum_probs=182.3

Q ss_pred             ecCCCceeEEEecCCCCcE-EEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-Ee
Q 010997          137 IIHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SG  214 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~-lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg  214 (496)
                      +.+...+..++|+| ++.. +++++.++.|++||+.++            +....+..+..  +..++|+|+++.++ ++
T Consensus        27 ~~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~~--~~~~~~~~~g~~l~~~~   91 (300)
T TIGR03866        27 FPVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATG------------EVIGTLPSGPD--PELFALHPNGKILYIAN   91 (300)
T ss_pred             EECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCC------------cEEEeccCCCC--ccEEEECCCCCEEEEEc
Confidence            33344578899999 5554 477788999999999876            33334444443  46789999998665 45


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.|+.|++||+.+....                                        ..+. +...+.+++|+|++ .++
T Consensus        92 ~~~~~l~~~d~~~~~~~----------------------------------------~~~~-~~~~~~~~~~~~dg-~~l  129 (300)
T TIGR03866        92 EDDNLVTVIDIETRKVL----------------------------------------AEIP-VGVEPEGMAVSPDG-KIV  129 (300)
T ss_pred             CCCCeEEEEECCCCeEE----------------------------------------eEee-CCCCcceEEECCCC-CEE
Confidence            66899999999753211                                        1222 12346789999999 677


Q ss_pred             EEEcCCC-eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          295 CSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       295 ~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      ++++.++ .+.+||.++..  ..... .....+.+++|+| ++.+|+ ++..++.|++||+++      ++.+..+..+.
T Consensus       130 ~~~~~~~~~~~~~d~~~~~--~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~------~~~~~~~~~~~  199 (300)
T TIGR03866       130 VNTSETTNMAHFIDTKTYE--IVDNV-LVDQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVAT------RKVIKKITFEI  199 (300)
T ss_pred             EEEecCCCeEEEEeCCCCe--EEEEE-EcCCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCc------ceeeeeeeecc
Confidence            7777664 57788987765  22222 2334567899999 777775 555699999999998      55555443221


Q ss_pred             -------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997          373 -------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT  445 (496)
Q Consensus       373 -------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l  445 (496)
                             .....++|+|++++++++.+.++.|.+||+.+.               +..... .+...+.+++|+|++.++
T Consensus       200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---------------~~~~~~-~~~~~~~~~~~~~~g~~l  263 (300)
T TIGR03866       200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY---------------EVLDYL-LVGQRVWQLAFTPDEKYL  263 (300)
T ss_pred             cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---------------cEEEEE-EeCCCcceEEECCCCCEE
Confidence                   123578999999977666666778999999763               122222 233468999999999887


Q ss_pred             EEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          446 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       446 ~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +++.+       .+|.|+|||+.      +++++.+++.. ...+.++|+|
T Consensus       264 ~~~~~-------~~~~i~v~d~~------~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       264 LTTNG-------VSNDVSVIDVA------ALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEEcC-------CCCeEEEEECC------CCcEEEEEEcc-cccceeEeCC
Confidence            75433       35999999999      67777777755 4459999987

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.9e-25  Score=221.50  Aligned_cols=278  Identities=20%  Similarity=0.369  Sum_probs=210.2

Q ss_pred             eEEEecCCCCcEEEEEeC----------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc---
Q 010997          144 NRIRELPQNTKIVATHTD----------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY---  210 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~---  210 (496)
                      ..++|+|....++|+|..          +.++-||.+......      ...++...+....  ..+.|+|.+.+..   
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~------~dlk~~~s~~s~~--rF~kL~W~~~g~~~~G   81 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDES------SDLKPVGSLQSSN--RFNKLAWGSYGSHSHG   81 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcc------ccccccccccccc--cceeeeecccCCCccc
Confidence            346788855557776644          335555554433111      0113333444333  3689999988765   


Q ss_pred             -eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          211 -VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       211 -l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                       |+.|..||.|.+||...-..                                  ......+..+..|.+.|..+.|++.
T Consensus        82 lIaGG~edG~I~ly~p~~~~~----------------------------------~~~~~~la~~~~h~G~V~gLDfN~~  127 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIA----------------------------------NASEEVLATKSKHTGPVLGLDFNPF  127 (1049)
T ss_pred             eeeccccCCceEEecchhhcc----------------------------------CcchHHHhhhcccCCceeeeecccc
Confidence             88899999999999864210                                  1222334667789999999999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      .++++++|+.||.|.|||+...+.+.........+.|.+++|+......||+++.+|.+.|||+|.      .+++..+.
T Consensus       128 q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~------~~pii~ls  201 (1049)
T KOG0307|consen  128 QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK------KKPIIKLS  201 (1049)
T ss_pred             CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC------CCcccccc
Confidence            988999999999999999998775544333346789999999987788999999999999999998      66777776


Q ss_pred             cCCC--CEEEEEEcCCCCCEEEEEeCCC---cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCc
Q 010997          370 GHSA--AVLCVQWSPDKSSVFGSSAEDG---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW  444 (496)
Q Consensus       370 ~h~~--~i~~l~~sp~~~~llas~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~  444 (496)
                      .+..  .+..|+|+|+...-+++++.|.   .|.+||++...              ..+..+.+|...|.++.|++.+..
T Consensus       202 ~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--------------sP~k~~~~H~~GilslsWc~~D~~  267 (1049)
T KOG0307|consen  202 DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--------------SPLKILEGHQRGILSLSWCPQDPR  267 (1049)
T ss_pred             cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--------------CchhhhcccccceeeeccCCCCch
Confidence            6554  4789999999877666777653   59999998742              234445899999999999999977


Q ss_pred             EEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          445 TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       445 l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +++|       +|.|+.|.+|+..      +++.+.++....+.+..+.|.|
T Consensus       268 lllS-------sgkD~~ii~wN~~------tgEvl~~~p~~~nW~fdv~w~p  306 (1049)
T KOG0307|consen  268 LLLS-------SGKDNRIICWNPN------TGEVLGELPAQGNWCFDVQWCP  306 (1049)
T ss_pred             hhhc-------ccCCCCeeEecCC------CceEeeecCCCCcceeeeeecC
Confidence            7774       5556999999999      8999999998888899999987

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=1.6e-23  Score=181.17  Aligned_cols=278  Identities=15%  Similarity=0.355  Sum_probs=202.5

Q ss_pred             EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec-------CCCCceEEecCC
Q 010997          145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-------PTEPYVLSGGKD  217 (496)
Q Consensus       145 ~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~-------p~~~~l~sg~~D  217 (496)
                      .+.|+| +|..|.+-+.|..+.+|++....-.....+.........++-..+..|+..+|-       |+..++++.++|
T Consensus        54 gckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~  132 (406)
T KOG2919|consen   54 GCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD  132 (406)
T ss_pred             cceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence            568999 888888899999999999875422211111112233334444455568888886       566799999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC---ceeEEEEccCCCceE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED---TVEDVTFCPSSAQEF  294 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~~~~l  294 (496)
                      .-|++||.-++........                                      -.|.+   ..-+++|+|+|. .|
T Consensus       133 ~PIh~wdaftG~lraSy~~--------------------------------------ydh~de~taAhsL~Fs~DGe-ql  173 (406)
T KOG2919|consen  133 QPIHLWDAFTGKLRASYRA--------------------------------------YDHQDEYTAAHSLQFSPDGE-QL  173 (406)
T ss_pred             Cceeeeeccccccccchhh--------------------------------------hhhHHhhhhheeEEecCCCC-eE
Confidence            9999999987755322211                                      12333   345899999994 45


Q ss_pred             EEEcCCCeEEEEEc-cCCCccceeee-----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          295 CSVGDDSCLILWDA-RVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       295 ~s~~~dg~i~iwd~-~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      ++ +...+|+++|+ |.+........     .+..+-|.|++|+|.+...+|.|+....+-||.-..      ..++..+
T Consensus       174 fa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~------~~pl~ll  246 (406)
T KOG2919|consen  174 FA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG------RRPLQLL  246 (406)
T ss_pred             ee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC------CCceeee
Confidence            44 56789999999 55542222221     233678899999998788999999999999988777      6889999


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC---CcceEEecCCCCcE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD---KVVDFHWNASDPWT  445 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~~p~~~~l  445 (496)
                      .+|.+.|+.++|.++|..+|.-+-.|-.|..||++..+.              ++..+..|.+   .-.-+...|.+.+|
T Consensus       247 ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~--------------pv~~L~rhv~~TNQRI~FDld~~~~~L  312 (406)
T KOG2919|consen  247 GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD--------------PVYALERHVGDTNQRILFDLDPKGEIL  312 (406)
T ss_pred             cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc--------------hhhhhhhhccCccceEEEecCCCCcee
Confidence            999999999999999998874444488999999998532              3444555544   22345667878776


Q ss_pred             EEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          446 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       446 ~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +        +|+.||.|++||+.+     .+..+..+..|+..|+.|+++|
T Consensus       313 a--------sG~tdG~V~vwdlk~-----~gn~~sv~~~~sd~vNgvslnP  350 (406)
T KOG2919|consen  313 A--------SGDTDGSVRVWDLKD-----LGNEVSVTGNYSDTVNGVSLNP  350 (406)
T ss_pred             e--------ccCCCccEEEEecCC-----CCCcccccccccccccceecCc
Confidence            6        788889999999995     3667788888999999999988

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=1.3e-23  Score=195.58  Aligned_cols=309  Identities=17%  Similarity=0.170  Sum_probs=220.8

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-c
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-Y  210 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~  210 (496)
                      ..+-..+|++.|.+|...| .+..||+|+.||+|+||.+.++            +++.++.--.  .|.|++|+|.+. -
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~Tg------------Rcvr~~~~d~--~I~~vaw~P~~~~~  456 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATG------------RCVRTVQFDS--EIRSVAWNPLSDLC  456 (733)
T ss_pred             eeeeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecc------------eEEEEEeecc--eeEEEEecCCCCce
Confidence            4456679999999999999 9999999999999999999999            6666655443  699999999876 3


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC----cCCeeeeecCCCceeEEEE
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS----VGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~v~~l~~  286 (496)
                      ++.++....+.|-+..-+................       ........+..|....    ...+.....|...|..|.|
T Consensus       457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~-------~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW  529 (733)
T KOG0650|consen  457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAP-------NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW  529 (733)
T ss_pred             eEEEEecCceEEeCccccchhhhcchhhhhhcCC-------CccCCcccceeechhhhhhhccceEEEEecCCccceeee
Confidence            3344444556666654331111100000000000       0011112233333331    1123455678899999999


Q ss_pred             ccCCCceEEEEcC---CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997          287 CPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       287 ~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~  363 (496)
                      |..| .+|++..-   ...|.|+++.....  ...+....+.|.++.|+| ...+|++++. ..|+|||+..      ..
T Consensus       530 HrkG-DYlatV~~~~~~~~VliHQLSK~~s--Q~PF~kskG~vq~v~FHP-s~p~lfVaTq-~~vRiYdL~k------qe  598 (733)
T KOG0650|consen  530 HRKG-DYLATVMPDSGNKSVLIHQLSKRKS--QSPFRKSKGLVQRVKFHP-SKPYLFVATQ-RSVRIYDLSK------QE  598 (733)
T ss_pred             ecCC-ceEEEeccCCCcceEEEEecccccc--cCchhhcCCceeEEEecC-CCceEEEEec-cceEEEehhH------HH
Confidence            9999 67887654   35799999987662  344555678899999999 6777777754 5699999998      67


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  443 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~  443 (496)
                      .+.++......|.+++.+|.|..|+ .|+.|+.++.||+....              .....+.-|...|++|+|++.-+
T Consensus       599 lvKkL~tg~kwiS~msihp~GDnli-~gs~d~k~~WfDldlss--------------kPyk~lr~H~~avr~Va~H~ryP  663 (733)
T KOG0650|consen  599 LVKKLLTGSKWISSMSIHPNGDNLI-LGSYDKKMCWFDLDLSS--------------KPYKTLRLHEKAVRSVAFHKRYP  663 (733)
T ss_pred             HHHHHhcCCeeeeeeeecCCCCeEE-EecCCCeeEEEEcccCc--------------chhHHhhhhhhhhhhhhhccccc
Confidence            7777777788899999999999875 88899999999998742              23344677899999999999766


Q ss_pred             cEEEEecCCCCCCCCCCeEEEeec---CCCCcCCchHHHHHHHhccce----EEEeccCC
Q 010997          444 WTVVSVSDDCDSTGGGGTLQIWRM---SDLIYRPQDEVLAELEKFKAH----VISCTSKP  496 (496)
Q Consensus       444 ~l~~s~s~d~~sgg~Dg~i~iw~~---~~~~~~~~~~~~~~l~~h~~~----v~~~~~sP  496 (496)
                       |++|+++|       |++.||.-   ++++.++.--++..|.+|...    |.++.|||
T Consensus       664 -Lfas~sdD-------gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP  715 (733)
T KOG0650|consen  664 -LFASGSDD-------GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP  715 (733)
T ss_pred             -eeeeecCC-------CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence             56666665       99999973   444555666788999999876    99999998

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=4e-23  Score=195.44  Aligned_cols=326  Identities=18%  Similarity=0.295  Sum_probs=214.9

Q ss_pred             cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceE----------E-EecCCCceeEEEecCCCCcEEEEEeC
Q 010997           93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKH----------K-TIIHPGEVNRIRELPQNTKIVATHTD  161 (496)
Q Consensus        93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~h~~~V~~l~~~p~~~~~lat~~~  161 (496)
                      ++++.+.+|+||++.+-........... .......|.+.+.          . ..||.+.|+++.|+| .+..|.+++.
T Consensus       210 aS~SQD~yIRiW~i~~~~~~~~~~~e~~-~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASa  287 (764)
T KOG1063|consen  210 ASSSQDRYIRIWRIVLGDDEDSNEREDS-LTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASA  287 (764)
T ss_pred             EecCCceEEEEEEEEecCCccccccccc-cccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheeccc
Confidence            3567889999999876442111100000 0000111222111          1 249999999999999 7777889999


Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEE--ecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCcccc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA  239 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l--~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~  239 (496)
                      |.++.||.........        .....+  .++.....++.-|+|+++.+++-+.-|-.++|...+...         
T Consensus       288 DksmiiW~pd~~tGiW--------v~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~---------  350 (764)
T KOG1063|consen  288 DKSMIIWKPDENTGIW--------VDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTF---------  350 (764)
T ss_pred             CcceEEEecCCccceE--------EEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccc---------
Confidence            9999999876652111        111111  223333578999999999999999999999998332110         


Q ss_pred             ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC----------------------------
Q 010997          240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA----------------------------  291 (496)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~----------------------------  291 (496)
                                                  ..+...+.+|.+.|.++.|+|.|.                            
T Consensus       351 ----------------------------w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaR  402 (764)
T KOG1063|consen  351 ----------------------------WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIAR  402 (764)
T ss_pred             ----------------------------eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecc
Confidence                                        111122334555555555555541                            


Q ss_pred             -----------------ceEEEEcCCCeEEEEEccCC---------------C----------------c----------
Q 010997          292 -----------------QEFCSVGDDSCLILWDARVG---------------T----------------S----------  313 (496)
Q Consensus       292 -----------------~~l~s~~~dg~i~iwd~~~~---------------~----------------~----------  313 (496)
                                       ..|++|.+...+|+|+....               .                +          
T Consensus       403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G  482 (764)
T KOG1063|consen  403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG  482 (764)
T ss_pred             cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence                             33444444444444433200               0                0          


Q ss_pred             ---------------------------------cceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCC
Q 010997          314 ---------------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRN  355 (496)
Q Consensus       314 ---------------------------------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~  355 (496)
                                                       |....+.+|...|.+++.+| +++++|++...     ..|+||+..+
T Consensus       483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~  561 (764)
T KOG1063|consen  483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN  561 (764)
T ss_pred             cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc
Confidence                                             01222357889999999999 99999998865     4699999998


Q ss_pred             CCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcce
Q 010997          356 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  435 (496)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  435 (496)
                            ...+..+.+|.-.|+.++|||++++| ++.+.|+++.+|........           ...+.....|+.-|.+
T Consensus       562 ------W~~~~~L~~HsLTVT~l~FSpdg~~L-LsvsRDRt~sl~~~~~~~~~-----------e~~fa~~k~HtRIIWd  623 (764)
T KOG1063|consen  562 ------WLQVQELEGHSLTVTRLAFSPDGRYL-LSVSRDRTVSLYEVQEDIKD-----------EFRFACLKAHTRIIWD  623 (764)
T ss_pred             ------hhhhheecccceEEEEEEECCCCcEE-EEeecCceEEeeeeecccch-----------hhhhccccccceEEEE
Confidence                  77888899999999999999999975 58999999999998553111           1112336789999999


Q ss_pred             EEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHH--HHHhccceEEEeccCC
Q 010997          436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA--ELEKFKAHVISCTSKP  496 (496)
Q Consensus       436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~--~l~~h~~~v~~~~~sP  496 (496)
                      +.|+|++.+ +|       |++.|.+|+||...+.    ..+.+.  ....+..+|+++++.|
T Consensus       624 csW~pde~~-Fa-------TaSRDK~VkVW~~~~~----~d~~i~~~a~~~~~~aVTAv~~~~  674 (764)
T KOG1063|consen  624 CSWSPDEKY-FA-------TASRDKKVKVWEEPDL----RDKYISRFACLKFSLAVTAVAYLP  674 (764)
T ss_pred             cccCcccce-eE-------EecCCceEEEEeccCc----hhhhhhhhchhccCCceeeEEeec
Confidence            999999887 55       4555599999999854    123333  3456888999999876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=7.2e-23  Score=175.70  Aligned_cols=261  Identities=14%  Similarity=0.183  Sum_probs=196.3

Q ss_pred             CCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997           94 DGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ  173 (496)
Q Consensus        94 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~  173 (496)
                      .++.++.+++|+++-...          +.     |    .....|.++|.+++|+. ++..+++|+.|+.+++||+.++
T Consensus        45 A~SWD~tVR~wevq~~g~----------~~-----~----ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   45 AGSWDGTVRIWEVQNSGQ----------LV-----P----KAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             ecccCCceEEEEEecCCc----------cc-----c----hhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEccCC
Confidence            457899999998764211          10     1    13357999999999999 8889999999999999999988


Q ss_pred             CCccccCCCCCCCCceEEecCCCCcceeeeecCCCC--ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceecc
Q 010997          174 PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ  251 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~--~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (496)
                      .             ...+..|.+ +|.++.|-+...  .|+|||.|++|++||.+.....                    
T Consensus       105 Q-------------~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv--------------------  150 (347)
T KOG0647|consen  105 Q-------------VSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV--------------------  150 (347)
T ss_pred             C-------------eeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccCCCCee--------------------
Confidence            2             345677877 799999987755  7999999999999999853221                    


Q ss_pred             CCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEe
Q 010997          252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW  331 (496)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~  331 (496)
                                          ..+. -.+.|.++..-  . .+++.+..+..|.+|+++.+............-.+.||+.
T Consensus       151 --------------------~t~~-LPeRvYa~Dv~--~-pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~  206 (347)
T KOG0647|consen  151 --------------------ATLQ-LPERVYAADVL--Y-PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVAC  206 (347)
T ss_pred             --------------------eeee-ccceeeehhcc--C-ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEE
Confidence                                1111 23456665543  2 4688888899999999987763333333344556889998


Q ss_pred             cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC---------CCEEEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997          332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  402 (496)
Q Consensus       332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~---------~~i~~l~~sp~~~~llas~~~dg~i~iwd~  402 (496)
                      .+ +....|.|+-+|.+.|..+....    ...-.+|+.|.         .+|++|+|+|... .|+|++.||+..+||-
T Consensus       207 f~-d~~~~alGsiEGrv~iq~id~~~----~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  207 FQ-DKDGFALGSIEGRVAIQYIDDPN----PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDK  280 (347)
T ss_pred             Ee-cCCceEeeeecceEEEEecCCCC----ccCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecc
Confidence            88 77777999999999999888732    13334455554         2588999999877 4789999999999998


Q ss_pred             CCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997          403 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  453 (496)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~  453 (496)
                      ...               ..+.....|..+|++++|+.+|..++.+.+.|.
T Consensus       281 dar---------------~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDW  316 (347)
T KOG0647|consen  281 DAR---------------TKLKTSETHPQPITCCSFNRNGSIFAYALGYDW  316 (347)
T ss_pred             hhh---------------hhhhccCcCCCccceeEecCCCCEEEEEeeccc
Confidence            764               344555678899999999999999888888885

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=5.4e-23  Score=194.98  Aligned_cols=296  Identities=15%  Similarity=0.203  Sum_probs=215.8

Q ss_pred             ccceEEEecCCCceeEEEecCC----------CCcEEEEEeCCCcEEEEeCCCCCCcccc----C-----------CCCC
Q 010997          130 FVKKHKTIIHPGEVNRIRELPQ----------NTKIVATHTDSPDVLIWDVEAQPNRHAV----L-----------GATN  184 (496)
Q Consensus       130 ~~~~~~~~~h~~~V~~l~~~p~----------~~~~lat~~~dg~i~iwd~~~~~~~~~~----~-----------~~~~  184 (496)
                      .-+....+.|...|+.+.-.|-          -..-++|++.|++|++||+....+...+    .           +..+
T Consensus       359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q  438 (1080)
T KOG1408|consen  359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ  438 (1080)
T ss_pred             ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence            4456777889998988876661          1225889999999999999874322210    0           0000


Q ss_pred             C----------CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997          185 S----------RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK  254 (496)
Q Consensus       185 ~----------~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (496)
                      .          +.....-+.. ..+.+++.+|+|++|++|..-|.++|+++.....                        
T Consensus       439 ~~~d~~~~~fdka~~s~~d~r-~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~------------------------  493 (1080)
T KOG1408|consen  439 IMHDASAGIFDKALVSTCDSR-FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY------------------------  493 (1080)
T ss_pred             hhhhccCCcccccchhhcCcc-cceEEEEECCCcceecccCccCceEEEEehhhhh------------------------
Confidence            0          0011111111 2489999999999999999999999999975322                        


Q ss_pred             CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec
Q 010997          255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  332 (496)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s  332 (496)
                                      ...+..|...|.|+.|+..  +..+|++++.|..|++||+...-. +..++.+|...|++|.|.
T Consensus       494 ----------------~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~-l~qtld~HSssITsvKFa  556 (1080)
T KOG1408|consen  494 ----------------TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD-LVQTLDGHSSSITSVKFA  556 (1080)
T ss_pred             ----------------hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc-hhhhhcccccceeEEEEe
Confidence                            2556789999999999853  236899999999999999976543 567788999999999998


Q ss_pred             CCCC--cEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997          333 PLDD--NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  410 (496)
Q Consensus       333 p~~~--~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~  410 (496)
                      - ++  ..+++++.|..|.+--.+.... +..-+.++-......++.++..|...+ +++++.|+.|+|||+..++.   
T Consensus       557 ~-~gln~~MiscGADksimFr~~qk~~~-g~~f~r~t~t~~ktTlYDm~Vdp~~k~-v~t~cQDrnirif~i~sgKq---  630 (1080)
T KOG1408|consen  557 C-NGLNRKMISCGADKSIMFRVNQKASS-GRLFPRHTQTLSKTTLYDMAVDPTSKL-VVTVCQDRNIRIFDIESGKQ---  630 (1080)
T ss_pred             e-cCCceEEEeccCchhhheehhccccC-ceeccccccccccceEEEeeeCCCcce-EEEEecccceEEEeccccce---
Confidence            7 44  6788999998776543332111 000111111122457899999999985 57999999999999998522   


Q ss_pred             CCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEE
Q 010997          411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI  490 (496)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~  490 (496)
                               ...+..-.+|.+....+...|.|-|++.||+        |.++.++|+.      ++++++.+.||...|+
T Consensus       631 ---------~k~FKgs~~~eG~lIKv~lDPSgiY~atScs--------dktl~~~Df~------sgEcvA~m~GHsE~VT  687 (1080)
T KOG1408|consen  631 ---------VKSFKGSRDHEGDLIKVILDPSGIYLATSCS--------DKTLCFVDFV------SGECVAQMTGHSEAVT  687 (1080)
T ss_pred             ---------eeeecccccCCCceEEEEECCCccEEEEeec--------CCceEEEEec------cchhhhhhcCcchhee
Confidence                     1334444567788889999999999886666        5899999999      8999999999999999


Q ss_pred             EeccCC
Q 010997          491 SCTSKP  496 (496)
Q Consensus       491 ~~~~sP  496 (496)
                      .+.|.|
T Consensus       688 G~kF~n  693 (1080)
T KOG1408|consen  688 GVKFLN  693 (1080)
T ss_pred             eeeecc
Confidence            999975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=8.9e-24  Score=192.66  Aligned_cols=241  Identities=19%  Similarity=0.357  Sum_probs=196.9

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      ...-|.++..+| +++.|++|+.-.++.|||+.....          +....+..-. ...++|+.+||.+..++|..||
T Consensus       464 rdnyiRSckL~p-dgrtLivGGeastlsiWDLAapTp----------rikaeltssa-paCyALa~spDakvcFsccsdG  531 (705)
T KOG0639|consen  464 RDNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTP----------RIKAELTSSA-PACYALAISPDAKVCFSCCSDG  531 (705)
T ss_pred             cccceeeeEecC-CCceEEeccccceeeeeeccCCCc----------chhhhcCCcc-hhhhhhhcCCccceeeeeccCC
Confidence            445688889999 889999999999999999987621          1112222222 2578999999999999999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .|.|||+.+..                                        .++.|.+|.+.+.||..+++| ..|-||+
T Consensus       532 nI~vwDLhnq~----------------------------------------~VrqfqGhtDGascIdis~dG-tklWTGG  570 (705)
T KOG0639|consen  532 NIAVWDLHNQT----------------------------------------LVRQFQGHTDGASCIDISKDG-TKLWTGG  570 (705)
T ss_pred             cEEEEEcccce----------------------------------------eeecccCCCCCceeEEecCCC-ceeecCC
Confidence            99999998543                                        247789999999999999999 7899999


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  378 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l  378 (496)
                      -|.+|+.||+|.+......   ...+.|.++..+| ++.+||.|-.++.+.+.....       ...+.+..|.+.|.++
T Consensus       571 lDntvRcWDlregrqlqqh---dF~SQIfSLg~cP-~~dWlavGMens~vevlh~sk-------p~kyqlhlheScVLSl  639 (705)
T KOG0639|consen  571 LDNTVRCWDLREGRQLQQH---DFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSK-------PEKYQLHLHESCVLSL  639 (705)
T ss_pred             Cccceeehhhhhhhhhhhh---hhhhhheecccCC-CccceeeecccCcEEEEecCC-------ccceeecccccEEEEE
Confidence            9999999999998843222   3467899999999 999999999999999998875       4566777899999999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCC
Q 010997          379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG  458 (496)
Q Consensus       379 ~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~  458 (496)
                      .|.+.|++ |++.+.|+.+..|.+..+               ..+|... ..+.|.++..+.++.+++        ||+.
T Consensus       640 KFa~cGkw-fvStGkDnlLnawrtPyG---------------asiFqsk-E~SsVlsCDIS~ddkyIV--------TGSG  694 (705)
T KOG0639|consen  640 KFAYCGKW-FVSTGKDNLLNAWRTPYG---------------ASIFQSK-ESSSVLSCDISFDDKYIV--------TGSG  694 (705)
T ss_pred             EecccCce-eeecCchhhhhhccCccc---------------cceeecc-ccCcceeeeeccCceEEE--------ecCC
Confidence            99999996 679999999999998875               3344443 356799999999888766        7777


Q ss_pred             CCeEEEeecC
Q 010997          459 GGTLQIWRMS  468 (496)
Q Consensus       459 Dg~i~iw~~~  468 (496)
                      |....||.+.
T Consensus       695 dkkATVYeV~  704 (705)
T KOG0639|consen  695 DKKATVYEVI  704 (705)
T ss_pred             CcceEEEEEe
Confidence            8888888763

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1e-22  Score=175.72  Aligned_cols=224  Identities=17%  Similarity=0.350  Sum_probs=174.2

Q ss_pred             cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCC-CcEEEEEeCCCcEEEEeCC
Q 010997           93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQN-TKIVATHTDSPDVLIWDVE  171 (496)
Q Consensus        93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~-~~~lat~~~dg~i~iwd~~  171 (496)
                      ++|+.+.+|.|+++.-                     ..+.-.+..|.|.|+++.|.+.- ...|++|+.||.|.+|+..
T Consensus        57 aSGssDetI~IYDm~k---------------------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   57 ASGSSDETIHIYDMRK---------------------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             eccCCCCcEEEEeccc---------------------hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            4677888888876532                     12344567899999999998832 2378899999999999998


Q ss_pred             CCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceecc
Q 010997          172 AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQ  251 (496)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (496)
                      .-            ..+..+++|.+. |+.++.+|.+++-++.+.|+.+++||+-+++......                
T Consensus       116 ~W------------~~~~slK~H~~~-Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~----------------  166 (362)
T KOG0294|consen  116 SW------------ELLKSLKAHKGQ-VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN----------------  166 (362)
T ss_pred             Ce------------EEeeeecccccc-cceeEecCCCceEEEEcCCceeeeehhhcCccceeec----------------
Confidence            77            677899999994 9999999999999999999999999997654321111                


Q ss_pred             CCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEe
Q 010997          252 SPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW  331 (496)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~  331 (496)
                                            +   ....+.+.|+|.| ..|+.++. ..|-+|.+.+..  +... ......+.|+.|
T Consensus       167 ----------------------L---~~~at~v~w~~~G-d~F~v~~~-~~i~i~q~d~A~--v~~~-i~~~~r~l~~~~  216 (362)
T KOG0294|consen  167 ----------------------L---KNKATLVSWSPQG-DHFVVSGR-NKIDIYQLDNAS--VFRE-IENPKRILCATF  216 (362)
T ss_pred             ----------------------c---CCcceeeEEcCCC-CEEEEEec-cEEEEEecccHh--Hhhh-hhccccceeeee
Confidence                                  1   1122348999999 55666655 468899887765  2222 233456778888


Q ss_pred             cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc--CCCCCEEEEEeCCCcEEEEECCCC
Q 010997          332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS--PDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s--p~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      .  ++..|++|+.|+.|++||...      ..++..+.+|...|.++.+-  |++. +|+|++.||.|+|||++..
T Consensus       217 l--~~~~L~vG~d~~~i~~~D~ds------~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  217 L--DGSELLVGGDNEWISLKDTDS------DTPLTEFLAHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             c--CCceEEEecCCceEEEeccCC------CccceeeecchhheeeeEEEecCCce-EEEEeccCceEEEEEcccc
Confidence            7  588999999999999999998      78999999999999999843  4444 6789999999999999874

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.2e-23  Score=187.44  Aligned_cols=291  Identities=12%  Similarity=0.202  Sum_probs=206.7

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCC
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDK  218 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg  218 (496)
                      .+.|+++.|+| ...+|.+|+.||.++||.+....+.          .+..+.-- ..+|.+.+|.|+|. .+++++.-.
T Consensus       213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~----------~lqS~~l~-~fPi~~a~f~p~G~~~i~~s~rrk  280 (514)
T KOG2055|consen  213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNP----------KLQSIHLE-KFPIQKAEFAPNGHSVIFTSGRRK  280 (514)
T ss_pred             cCCceEEEecC-CCceEEEecCCCcEEEEEecCccCh----------hheeeeec-cCccceeeecCCCceEEEecccce
Confidence            47899999999 8889999999999999999876322          22233222 33789999999998 899999999


Q ss_pred             cEEEEecCCccccccCCccccc-----cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          219 SVVLWSIQDHITSSATDPATAK-----SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      .+..||+.+.+......+....     ....+..--........+.+.+....+.+.+..+. -.+.|.+++|+.++ ..
T Consensus       281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSds-k~  358 (514)
T KOG2055|consen  281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDS-KE  358 (514)
T ss_pred             EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCC-cE
Confidence            9999999987654433332211     00000000011122334555555555655555554 35679999999988 77


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeecc-CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      |++++.+|.|.+||++...  ++..+.. ..-.-++++.++ ++.+||+|+..|.|.|||..+.......+|+..+..-.
T Consensus       359 l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt  435 (514)
T KOG2055|consen  359 LLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT  435 (514)
T ss_pred             EEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh
Confidence            8888888999999999986  4554422 122345777778 89999999999999999987755555578898888888


Q ss_pred             CCEEEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          373 AAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      ..|++++|+|+.+ |||.+|.  +..+++--+.+..--.       ++|.     ..+-.+.|++++|+|.+.+++    
T Consensus       436 t~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFs-------NfP~-----~n~~vg~vtc~aFSP~sG~lA----  498 (514)
T KOG2055|consen  436 TAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFS-------NFPT-----SNTKVGHVTCMAFSPNSGYLA----  498 (514)
T ss_pred             eeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeec-------cCCC-----CCCcccceEEEEecCCCceEE----
Confidence            9999999999998 6777765  6678887776521000       0111     122345799999999888766    


Q ss_pred             CCCCCCCCCCeEEEeecC
Q 010997          451 DDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~  468 (496)
                          .|..+|.|.+|.+.
T Consensus       499 ----vGNe~grv~l~kL~  512 (514)
T KOG2055|consen  499 ----VGNEAGRVHLFKLH  512 (514)
T ss_pred             ----eecCCCceeeEeec
Confidence                56667999999986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.5e-22  Score=174.47  Aligned_cols=237  Identities=16%  Similarity=0.231  Sum_probs=181.2

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ..+.|.+++.+++|.+  ...+++|+.||.|+.+|+.++.             ...+..|.. +|.|+.+++....+++|
T Consensus        49 ~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~-------------~~~igth~~-~i~ci~~~~~~~~vIsg  112 (323)
T KOG1036|consen   49 LKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGN-------------EDQIGTHDE-GIRCIEYSYEVGCVISG  112 (323)
T ss_pred             hheecCCceeeeeccC--CceEEEeccCceEEEEEecCCc-------------ceeeccCCC-ceEEEEeeccCCeEEEc
Confidence            4567999999999987  3468899999999999999872             234566766 79999999988899999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      |.|++|++||.+......                                        .+. ....|.++...  + +.|
T Consensus       113 sWD~~ik~wD~R~~~~~~----------------------------------------~~d-~~kkVy~~~v~--g-~~L  148 (323)
T KOG1036|consen  113 SWDKTIKFWDPRNKVVVG----------------------------------------TFD-QGKKVYCMDVS--G-NRL  148 (323)
T ss_pred             ccCccEEEEecccccccc----------------------------------------ccc-cCceEEEEecc--C-CEE
Confidence            999999999998532211                                        111 12378888775  3 679


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC--
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS--  372 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~--  372 (496)
                      +.|+.|..|.+||+|+...+.......-.-.+.||++.| ++.-+++++-||.|.+=.+.....  ....-..|+.|.  
T Consensus       149 vVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~--~~skkyaFkCHr~~  225 (323)
T KOG1036|consen  149 VVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEE--AQSKKYAFKCHRLS  225 (323)
T ss_pred             EEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchH--HhhhceeEEeeecc
Confidence            999999999999999987555333445567889999999 888899999999988766554210  013344556564  


Q ss_pred             -------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997          373 -------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT  445 (496)
Q Consensus       373 -------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l  445 (496)
                             .+|++|+|+|-.. .||||+.||.|.+||+...               ..+..+......|..++|+.+|..|
T Consensus       226 ~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~~r---------------Krl~q~~~~~~SI~slsfs~dG~~L  289 (323)
T KOG1036|consen  226 EKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLFNR---------------KRLKQLAKYETSISSLSFSMDGSLL  289 (323)
T ss_pred             cCCceEEEEeceeEeccccc-eEEecCCCceEEEccCcch---------------hhhhhccCCCCceEEEEeccCCCeE
Confidence                   3799999999876 4789999999999999874               3344455666789999999999877


Q ss_pred             EEEec
Q 010997          446 VVSVS  450 (496)
Q Consensus       446 ~~s~s  450 (496)
                      +++.|
T Consensus       290 Aia~s  294 (323)
T KOG1036|consen  290 AIASS  294 (323)
T ss_pred             EEEec
Confidence            76554

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-23  Score=191.19  Aligned_cols=266  Identities=18%  Similarity=0.271  Sum_probs=203.3

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  222 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i  222 (496)
                      |+.+.|...+.-.+|+.+.|..|++|.-....  .      ....+..+.|..   -+|++......|+++|+..+.|+|
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~--~------~Vp~~~k~~gd~---~~Cv~~~s~S~y~~sgG~~~~Vki  105 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT--P------EVPRVRKLTGDN---AFCVACASQSLYEISGGQSGCVKI  105 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCC--C------ccceeeccccch---HHHHhhhhcceeeeccCcCceeee
Confidence            89999988443344555667789999765441  0      011122333332   356666666689999999999999


Q ss_pred             EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe
Q 010997          223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  302 (496)
Q Consensus       223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  302 (496)
                      ||++...+                                        .+.+.+|++.|+++.++..+ .+|++++..|-
T Consensus       106 wdl~~kl~----------------------------------------hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGd  144 (673)
T KOG4378|consen  106 WDLRAKLI----------------------------------------HRFLKDHQSTVTYVDYNNTD-EYIASVSDGGD  144 (673)
T ss_pred             hhhHHHHH----------------------------------------hhhccCCcceeEEEEecCCc-ceeEEeccCCc
Confidence            99984322                                        25678899999999999887 68999999999


Q ss_pred             EEEEEccCCCccceeeecc-CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc
Q 010997          303 LILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS  381 (496)
Q Consensus       303 i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s  381 (496)
                      |.|..+.++..  ...+.. ....|.-+.|+|....+|.+++.+|.|.+||...+.     ...+-...|..+...|+|+
T Consensus       145 iiih~~~t~~~--tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s-----p~~~~~~~HsAP~~gicfs  217 (673)
T KOG4378|consen  145 IIIHGTKTKQK--TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-----PIFHASEAHSAPCRGICFS  217 (673)
T ss_pred             EEEEecccCcc--ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC-----cccchhhhccCCcCcceec
Confidence            99999988773  333322 345567899999777889999999999999999842     2334456899999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCe
Q 010997          382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT  461 (496)
Q Consensus       382 p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~  461 (496)
                      |..+.||++.+.|..|.+||++....           ...+.     ...+...++|.++|.+|+        .|...|.
T Consensus       218 psne~l~vsVG~Dkki~~yD~~s~~s-----------~~~l~-----y~~Plstvaf~~~G~~L~--------aG~s~G~  273 (673)
T KOG4378|consen  218 PSNEALLVSVGYDKKINIYDIRSQAS-----------TDRLT-----YSHPLSTVAFSECGTYLC--------AGNSKGE  273 (673)
T ss_pred             CCccceEEEecccceEEEeecccccc-----------cceee-----ecCCcceeeecCCceEEE--------eecCCce
Confidence            99999999999999999999986311           11122     245789999999888776        4555699


Q ss_pred             EEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          462 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       462 i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      |..||++.     ...+++++..|...|++++|.|
T Consensus       274 ~i~YD~R~-----~k~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  274 LIAYDMRS-----TKAPVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             EEEEeccc-----CCCCceEeeecccceeEEEeee
Confidence            99999995     5788999999999999999976

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.1e-22  Score=192.10  Aligned_cols=267  Identities=16%  Similarity=0.247  Sum_probs=208.0

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      -+.+|.++||+. ..+.||.+-.+|.|.||++....           -....+.|+.+..|.+|+|+ ++..|+|.+.+|
T Consensus        24 ~Ps~I~slA~s~-kS~~lAvsRt~g~IEiwN~~~~w-----------~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg   90 (691)
T KOG2048|consen   24 KPSEIVSLAYSH-KSNQLAVSRTDGNIEIWNLSNNW-----------FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSG   90 (691)
T ss_pred             eccceEEEEEec-cCCceeeeccCCcEEEEccCCCc-----------eeeEEEecCCCCceeeEEEc-cCCeEEeecCCc
Confidence            357899999999 66679999999999999998863           45567889999899999999 455788999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      +|.-||+.+..                                        ++..+....+.|++++.+|.+ ..++.|+
T Consensus        91 ~i~EwDl~~lk----------------------------------------~~~~~d~~gg~IWsiai~p~~-~~l~Igc  129 (691)
T KOG2048|consen   91 SITEWDLHTLK----------------------------------------QKYNIDSNGGAIWSIAINPEN-TILAIGC  129 (691)
T ss_pred             eEEEEecccCc----------------------------------------eeEEecCCCcceeEEEeCCcc-ceEEeec
Confidence            99999997543                                        335556677899999999998 7899999


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE-------ecc-
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-------FEG-  370 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-------~~~-  370 (496)
                      +||.+..++...+.-.....+....+.|.+++|+| ++..+++|+.||.|++||...      +..++.       +.. 
T Consensus       130 ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~------~~t~~~~~~~~d~l~k~  202 (691)
T KOG2048|consen  130 DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKS------GQTLHIITMQLDRLSKR  202 (691)
T ss_pred             CCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCC------CceEEEeeecccccccC
Confidence            99987777777665333344445678999999999 899999999999999999998      444441       111 


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      ...-|++|.|-.++.  +|+|..-|.|.+||...+               .++..+..|...|.+++-.+++.+++    
T Consensus       203 ~~~iVWSv~~Lrd~t--I~sgDS~G~V~FWd~~~g---------------TLiqS~~~h~adVl~Lav~~~~d~vf----  261 (691)
T KOG2048|consen  203 EPTIVWSVLFLRDST--IASGDSAGTVTFWDSIFG---------------TLIQSHSCHDADVLALAVADNEDRVF----  261 (691)
T ss_pred             CceEEEEEEEeecCc--EEEecCCceEEEEcccCc---------------chhhhhhhhhcceeEEEEcCCCCeEE----
Confidence            234588888887764  679999999999999875               56677889999999999999988888    


Q ss_pred             CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEec
Q 010997          451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCT  493 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~  493 (496)
                          ++|.|+.|.-+......-.  -........|..-|.++|
T Consensus       262 ----saGvd~~ii~~~~~~~~~~--wv~~~~r~~h~hdvrs~a  298 (691)
T KOG2048|consen  262 ----SAGVDPKIIQYSLTTNKSE--WVINSRRDLHAHDVRSMA  298 (691)
T ss_pred             ----EccCCCceEEEEecCCccc--eeeeccccCCcccceeee
Confidence                7788899998888743110  111222345555555554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.91  E-value=7e-23  Score=197.63  Aligned_cols=310  Identities=14%  Similarity=0.253  Sum_probs=219.1

Q ss_pred             ceEEEecCC-CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE-ecCCCCcceeeeecCCCC
Q 010997          132 KKHKTIIHP-GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TGHQDNAEFALAMCPTEP  209 (496)
Q Consensus       132 ~~~~~~~h~-~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l-~~h~~~~v~~l~~~p~~~  209 (496)
                      +++..+.|. |.|+.++|..++..++|+|+..|.+.+||++..            +....+ ..|.+ .|..+.|.|...
T Consensus       235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k------------kl~~v~~nah~~-sv~~~~fl~~ep  301 (910)
T KOG1539|consen  235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK------------KLINVTRNAHYG-SVTGATFLPGEP  301 (910)
T ss_pred             cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC------------eeeeeeeccccC-CcccceecCCCc
Confidence            567778886 999999999867778999999999999999987            333333 35655 578888888888


Q ss_pred             ceEEecCCCcEEEEecCCcccc--------ccCCcccc-ccCCCCCceecc-----------------------------
Q 010997          210 YVLSGGKDKSVVLWSIQDHITS--------SATDPATA-KSAGSSGSIIKQ-----------------------------  251 (496)
Q Consensus       210 ~l~sg~~Dg~i~iwd~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~-----------------------------  251 (496)
                      .|++++.|+++++|=.+++...        ....|... ...+.....+..                             
T Consensus       302 Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~  381 (910)
T KOG1539|consen  302 VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKR  381 (910)
T ss_pred             eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccc
Confidence            8888888888888865532110        00000000 000000000000                             


Q ss_pred             --------------------CC--------------CCCCCCCCCCCCCCcCC-eeeee-----cCCCceeEEEEccCCC
Q 010997          252 --------------------SP--------------KPGDGNDKAADGPSVGP-RGIYN-----GHEDTVEDVTFCPSSA  291 (496)
Q Consensus       252 --------------------~~--------------~~~~~~~~~~~~~~~~~-~~~~~-----~h~~~v~~l~~~~~~~  291 (496)
                                          ..              ..+......|+...... ...+.     .-...+++++.++.| 
T Consensus       382 ~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-  460 (910)
T KOG1539|consen  382 AKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-  460 (910)
T ss_pred             cccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-
Confidence                                00              00111112222222111 11111     123578899999998 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      ++.+.|...|.|-+|++.++-  ....+   ..|..+|+.++.+. .++.+++++.+|.+++||+..      ..++..+
T Consensus       461 NF~~IG~S~G~Id~fNmQSGi--~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~------k~l~~~l  531 (910)
T KOG1539|consen  461 NFVFIGYSKGTIDRFNMQSGI--HRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKK------KVLKKSL  531 (910)
T ss_pred             ceEEEeccCCeEEEEEcccCe--eecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCC------cceeeee
Confidence            899999999999999999886  33333   58999999999988 788999999999999999998      5666666


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s  448 (496)
                      + -...+.++..+.... ++|.+..|-.|+++|+.+.               ..+..+.||.+.|++++|||+|+|++  
T Consensus       532 ~-l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~---------------kvvR~f~gh~nritd~~FS~DgrWli--  592 (910)
T KOG1539|consen  532 R-LGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTR---------------KVVREFWGHGNRITDMTFSPDGRWLI--  592 (910)
T ss_pred             c-cCCCcceeeeeehhh-hhhhhcCceeEEEEEchhh---------------hhhHHhhccccceeeeEeCCCCcEEE--
Confidence            5 356677888887766 6789999999999999874               56677899999999999999999988  


Q ss_pred             ecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                            +++.|++|++||+.      ++.++..+- -..+..++.|||
T Consensus       593 ------sasmD~tIr~wDlp------t~~lID~~~-vd~~~~sls~SP  627 (910)
T KOG1539|consen  593 ------SASMDSTIRTWDLP------TGTLIDGLL-VDSPCTSLSFSP  627 (910)
T ss_pred             ------EeecCCcEEEEecc------CcceeeeEe-cCCcceeeEECC
Confidence                  66677999999998      666655554 456778888887

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=7.8e-24  Score=185.75  Aligned_cols=224  Identities=20%  Similarity=0.361  Sum_probs=182.2

Q ss_pred             CceEEecCCCCcceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997          187 PDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  265 (496)
Q Consensus       187 ~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (496)
                      .+..|.||.+ .|.|++=+|.. ..++||+.||.|+|||+.+..+                                   
T Consensus        58 Fv~~L~gHrd-GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------------------  101 (433)
T KOG0268|consen   58 FVGSLDGHRD-GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------------------  101 (433)
T ss_pred             chhhcccccc-ccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------------------
Confidence            3456789998 59999999986 6899999999999999975433                                   


Q ss_pred             CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997          266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  345 (496)
Q Consensus       266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d  345 (496)
                           +..+..|.+.|.+|++..   ..++++++|.+|+.|-+...   ...++ ...+.+..|.-+. .++.+||++.+
T Consensus       102 -----~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~~---p~~ti-lg~s~~~gIdh~~-~~~~FaTcGe~  168 (433)
T KOG0268|consen  102 -----IRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDGP---PLHTI-LGKSVYLGIDHHR-KNSVFATCGEQ  168 (433)
T ss_pred             -----hheeecccCceeeEEecc---cceEEecCCcceeeeeccCC---cceee-ecccccccccccc-ccccccccCce
Confidence                 367889999999999987   35899999999999998763   34444 3456677777776 67889988764


Q ss_pred             CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  425 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  425 (496)
                        |.|||.+.      ..|+.++..-...|.++.|+|....||++|+.|+.|.+||++..            .|...+..
T Consensus       169 --i~IWD~~R------~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~------------~Pl~KVi~  228 (433)
T KOG0268|consen  169 --IDIWDEQR------DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA------------SPLKKVIL  228 (433)
T ss_pred             --eeeccccc------CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC------------Cccceeee
Confidence              99999987      68899999888999999999999999999999999999999985            22222211


Q ss_pred             ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                          ...-+.++|+| ..+.++++++|       ..++.||++.+     ..++....+|.+.|++|+|||
T Consensus       229 ----~mRTN~IswnP-eafnF~~a~ED-------~nlY~~DmR~l-----~~p~~v~~dhvsAV~dVdfsp  282 (433)
T KOG0268|consen  229 ----TMRTNTICWNP-EAFNFVAANED-------HNLYTYDMRNL-----SRPLNVHKDHVSAVMDVDFSP  282 (433)
T ss_pred             ----eccccceecCc-cccceeecccc-------ccceehhhhhh-----cccchhhcccceeEEEeccCC
Confidence                23467899999 55666655554       89999999964     678899999999999999998

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.7e-22  Score=173.90  Aligned_cols=249  Identities=14%  Similarity=0.273  Sum_probs=184.3

Q ss_pred             EecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997          191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  270 (496)
Q Consensus       191 l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (496)
                      -.+|.+ .|.++.|.+.|+++|+|+.|++|+|||.+...                                    .+...
T Consensus         9 ~s~h~D-lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s------------------------------------~~W~~   51 (361)
T KOG2445|consen    9 DSGHKD-LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS------------------------------------GTWSC   51 (361)
T ss_pred             ccCCcc-eeeeeeecccCceeeeccCCCcEEEEeccCCC------------------------------------CceEE
Confidence            346776 79999999999999999999999999976432                                    23344


Q ss_pred             eeeeecCCCceeEEEE-ccCCCceEEEEcCCCeEEEEEccCC-------CccceeeeccCCCCeEEEEecCC-CCcEEEE
Q 010997          271 RGIYNGHEDTVEDVTF-CPSSAQEFCSVGDDSCLILWDARVG-------TSPVIKVEKAHDADLHCVDWNPL-DDNLILT  341 (496)
Q Consensus       271 ~~~~~~h~~~v~~l~~-~~~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~s  341 (496)
                      ......|.+.|..|.| +|.-++.+++++.|+++.||.-...       +.....++....+.|+.|.|.|. -|-.||+
T Consensus        52 Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~  131 (361)
T KOG2445|consen   52 TSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA  131 (361)
T ss_pred             eeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE
Confidence            4677889999999999 4555589999999999999976321       11234455667889999999994 3678999


Q ss_pred             EcCCCcEEEEeCCCCCCCCCCCCceEec-------cCCCCEEEEEEcCCC--CCEEEEEeCC-----CcEEEEECCCCCc
Q 010997          342 GSADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDK--SSVFGSSAED-----GLLNIWDYEKVGK  407 (496)
Q Consensus       342 gs~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~i~~l~~sp~~--~~llas~~~d-----g~i~iwd~~~~~~  407 (496)
                      ++.||++|||+.-.+-.-......+++.       .+..+-.||.|+|..  +.+||.|+.+     +.+.||.....++
T Consensus       132 ~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r  211 (361)
T KOG2445|consen  132 ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR  211 (361)
T ss_pred             eccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc
Confidence            9999999999877643322244455554       467778999999853  2367788755     4899999877542


Q ss_pred             ccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC---cEEEEecCCCCCCCCCCeEEEeecCCCC--------c----
Q 010997          408 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMSDLI--------Y----  472 (496)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~---~l~~s~s~d~~sgg~Dg~i~iw~~~~~~--------~----  472 (496)
                      .           ...+..+.+|..+|++++|.|+-.   .++|.++       .|| |+||++....        .    
T Consensus       212 K-----------w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~-------kDg-v~I~~v~~~~s~i~~ee~~~~~~  272 (361)
T KOG2445|consen  212 K-----------WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT-------KDG-VRIFKVKVARSAIEEEEVLAPDL  272 (361)
T ss_pred             e-----------eeeehhcCCCCCcceeeeeccccCCceeeEEEee-------cCc-EEEEEEeeccchhhhhcccCCCC
Confidence            2           234556779999999999999743   3666544       458 9999997321        1    


Q ss_pred             --CCchHHHHHHHhccceEEEeccC
Q 010997          473 --RPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       473 --~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                        .-.-+.+.++.+|++.|+.+.|.
T Consensus       273 ~~~l~v~~vs~~~~H~~~VWrv~wN  297 (361)
T KOG2445|consen  273 MTDLPVEKVSELDDHNGEVWRVRWN  297 (361)
T ss_pred             ccccceEEeeeccCCCCceEEEEEe
Confidence              11123567789999999999884

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.6e-22  Score=163.35  Aligned_cols=227  Identities=23%  Similarity=0.367  Sum_probs=173.2

Q ss_pred             ccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccc------------------c------------
Q 010997          130 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA------------------V------------  179 (496)
Q Consensus       130 ~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~------------------~------------  179 (496)
                      .+...+...|.|.|.|.+|+| .+.+||+|++|.+|++-.+....+...                  .            
T Consensus        79 ~v~~kr~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s  157 (350)
T KOG0641|consen   79 SVLCKRNKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS  157 (350)
T ss_pred             eEEeeeccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence            344445567999999999999 999999999999999987654432211                  0            


Q ss_pred             ----------CCCCCCCCceEEecCCCCcceee-eecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCce
Q 010997          180 ----------LGATNSRPDLILTGHQDNAEFAL-AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSI  248 (496)
Q Consensus       180 ----------~~~~~~~~~~~l~~h~~~~v~~l-~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  248 (496)
                                ..-...++...+.||++. |.++ .|  ++-.+++|+.|.+|++||++-..+......            
T Consensus       158 ~gagdc~iy~tdc~~g~~~~a~sghtgh-ilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~------------  222 (350)
T KOG0641|consen  158 AGAGDCKIYITDCGRGQGFHALSGHTGH-ILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDN------------  222 (350)
T ss_pred             cCCCcceEEEeecCCCCcceeecCCccc-EEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccC------------
Confidence                      000123556677888874 4444 34  577899999999999999985433221111            


Q ss_pred             eccCCCCCCCCCCCCCCCCcCCeeeeec---CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCC
Q 010997          249 IKQSPKPGDGNDKAADGPSVGPRGIYNG---HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD  325 (496)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  325 (496)
                                              .+.+   ....|.+++..|.| .+|++|-.|....+||+|.++  .+..+..|...
T Consensus       223 ------------------------~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r--~iq~f~phsad  275 (350)
T KOG0641|consen  223 ------------------------DFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGR--MIQRFHPHSAD  275 (350)
T ss_pred             ------------------------cccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCc--eeeeeCCCccc
Confidence                                    0111   23679999999999 899999999999999999988  78888899999


Q ss_pred             eEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997          326 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  403 (496)
Q Consensus       326 v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~  403 (496)
                      |.|+.|+| ...|+++++.|..|++-|+.-.-.  ..-++.....|+..+..+.|+|..-. |++.+.|.++.+|-+.
T Consensus       276 ir~vrfsp-~a~yllt~syd~~ikltdlqgdla--~el~~~vv~ehkdk~i~~rwh~~d~s-fisssadkt~tlwa~~  349 (350)
T KOG0641|consen  276 IRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLA--HELPIMVVAEHKDKAIQCRWHPQDFS-FISSSADKTATLWALN  349 (350)
T ss_pred             eeEEEeCC-CceEEEEecccceEEEeecccchh--hcCceEEEEeccCceEEEEecCccce-eeeccCcceEEEeccC
Confidence            99999999 899999999999999999874110  02344555679999999999998865 5589999999999764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=1e-21  Score=179.53  Aligned_cols=296  Identities=19%  Similarity=0.347  Sum_probs=206.1

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccc----------------------------cCCCCCCCCc
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA----------------------------VLGATNSRPD  188 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~----------------------------~~~~~~~~~~  188 (496)
                      ..|.+.|.++.... ++.+| +|+.|..|..||-.-......                            +.+..+....
T Consensus       284 ~aH~ggv~~L~~lr-~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~  361 (626)
T KOG2106|consen  284 HAHDGGVFSLCMLR-DGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT  361 (626)
T ss_pred             eecCCceEEEEEec-CccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence            39999999999988 88666 599999999999321111111                            1112223444


Q ss_pred             eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccccc---CCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997          189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA---TDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  265 (496)
Q Consensus       189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (496)
                      ....+|.+ ..+.++.+|+.+.|+|++.|+.+++|+  ..+....   .++........+.   ....+...+...+.+.
T Consensus       362 ~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg---~va~Gt~~G~w~V~d~  435 (626)
T KOG2106|consen  362 LTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG---VVAVGTATGRWFVLDT  435 (626)
T ss_pred             EEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc---eEEEeeccceEEEEec
Confidence            56678888 679999999999999999999999999  2222111   1121111111221   1122233344445555


Q ss_pred             CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997          266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  345 (496)
Q Consensus       266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d  345 (496)
                      .+...+..-.. ..++++++|+|+| .+||.|+.|+.|.||-+..........-+.+..+|+.+.|++ ++++|.+-+.|
T Consensus       436 e~~~lv~~~~d-~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d  512 (626)
T KOG2106|consen  436 ETQDLVTIHTD-NEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGD  512 (626)
T ss_pred             ccceeEEEEec-CCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCc
Confidence            55444444444 8899999999999 899999999999999998766433444445669999999999 99999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCCceEe---------------ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKF---------------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  410 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~---------------~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~  410 (496)
                      -.|..|........   ..++.+               ..+...|..++-+.+.. ++|+|.+.|.|++|...-.     
T Consensus       513 ~eiLyW~~~~~~~~---ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~-~lA~gdd~g~v~lf~yPc~-----  583 (626)
T KOG2106|consen  513 YEILYWKPSECKQI---TSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEK-LLASGDDFGKVHLFSYPCS-----  583 (626)
T ss_pred             eEEEEEccccCccc---ceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhh-hhhccccCceEEEEccccC-----
Confidence            99999954432111   111111               12444566666676666 7899999999999998763     


Q ss_pred             CCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                             .+........+|.+.|.+++|...+..++        +.|.|.+|..|++
T Consensus       584 -------s~rA~~he~~ghs~~vt~V~Fl~~d~~li--------~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  584 -------SPRAPSHEYGGHSSHVTNVAFLCKDSHLI--------STGKDTSIMQWRL  625 (626)
T ss_pred             -------CCcccceeeccccceeEEEEEeeCCceEE--------ecCCCceEEEEEe
Confidence                   44456667889999999999998777666        4447899999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.7e-22  Score=175.73  Aligned_cols=284  Identities=16%  Similarity=0.255  Sum_probs=202.9

Q ss_pred             cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      +......+|.|.|++|.|+. ++++||+|+.|..++||++...-..      ...+|+.....|+...|+||+|...+++
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~------k~~KPI~~~~~~H~SNIF~L~F~~~N~~  119 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVR------KTPKPIGVMEHPHRSNIFSLEFDLENRF  119 (609)
T ss_pred             hhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhh------cCCCCceeccCccccceEEEEEccCCee
Confidence            33445679999999999999 7999999999999999998754211      1226666666665457999999999999


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      |++|+.+++|.+.|+++.+.....                                      .-....+.|+.+..+|..
T Consensus       120 ~~SG~~~~~VI~HDiEt~qsi~V~--------------------------------------~~~~~~~~VY~m~~~P~D  161 (609)
T KOG4227|consen  120 LYSGERWGTVIKHDIETKQSIYVA--------------------------------------NENNNRGDVYHMDQHPTD  161 (609)
T ss_pred             EecCCCcceeEeeecccceeeeee--------------------------------------cccCcccceeecccCCCC
Confidence            999999999999999875432111                                      112234589999999997


Q ss_pred             CceEEEEcCCCeEEEEEccCCCcccee-eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC---------
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---------  360 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~---------  360 (496)
                       +.|++.+.++.|.+||.|....+... ...........+-|+|....+|++.+..+-+.+||++......         
T Consensus       162 -N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L  240 (609)
T KOG4227|consen  162 -NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL  240 (609)
T ss_pred             -ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC
Confidence             89999999999999999987643322 2334556788999999888999999999999999998743210         


Q ss_pred             --------------CCC---------CceEecc-----------CC-------CCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 010997          361 --------------VGS---------PINKFEG-----------HS-------AAVLCVQWSPDKSSVFGSSAEDGLLNI  399 (496)
Q Consensus       361 --------------~~~---------~~~~~~~-----------h~-------~~i~~l~~sp~~~~llas~~~dg~i~i  399 (496)
                                    .+.         +..-+.-           |.       ..+.+++|..+..  +++|+.+-.|++
T Consensus       241 ~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~  318 (609)
T KOG4227|consen  241 PQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHI  318 (609)
T ss_pred             cccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee--eeccCcccceEE
Confidence                          011         1001111           11       2355677765544  579999999999


Q ss_pred             EECCCCCcccCCC--CC-CCC-----CCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          400 WDYEKVGKKVEQG--PR-TTN-----YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       400 wd~~~~~~~~~~~--~~-~~~-----~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      |.+..........  .. +..     .....+..+.||...++.+.|+|.. ++++       +.|-.+.++||..-.+
T Consensus       319 WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~-~~l~-------SSGVE~~~KlWS~~r~  389 (609)
T KOG4227|consen  319 WKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN-NLLV-------SSGVENSFKLWSDHRL  389 (609)
T ss_pred             EecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc-ceEe-------ccchhhheeccccccC
Confidence            9997643332211  11 111     1223456789999999999999954 5665       5556699999986543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.90  E-value=1.3e-21  Score=190.42  Aligned_cols=281  Identities=18%  Similarity=0.262  Sum_probs=202.2

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC--ceE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--YVL  212 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~--~l~  212 (496)
                      ..+.-..+|.|+.|+|.+++++|.|+.+|.|.+||+..+....      ..........|.. +|+.+.|..+..  -|+
T Consensus       237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~------~s~ls~~~~sh~~-~v~~vvW~~~~~~~~f~  309 (555)
T KOG1587|consen  237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP------PSGLSALEVSHSE-PVTAVVWLQNEHNTEFF  309 (555)
T ss_pred             EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC------CcccccccccCCc-CeEEEEEeccCCCCceE
Confidence            3455678899999999999999999999999999999874321      0111223345666 789999987643  499


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +++.||.|+.|+++.-...........                            ......-......+++++|.+..++
T Consensus       310 s~ssDG~i~~W~~~~l~~P~e~~~~~~----------------------------~~~~~~~~~~~~~~t~~~F~~~~p~  361 (555)
T KOG1587|consen  310 SLSSDGSICSWDTDMLSLPVEGLLLES----------------------------KKHKGQQSSKAVGATSLKFEPTDPN  361 (555)
T ss_pred             EEecCCcEeeeeccccccchhhccccc----------------------------ccccccccccccceeeEeeccCCCc
Confidence            999999999998764322111100000                            0000000122346899999999999


Q ss_pred             eEEEEcCCCeEEEEEccCCCccc------eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997          293 EFCSVGDDSCLILWDARVGTSPV------IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  366 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  366 (496)
                      .|+.|+++|.|.--+-...+...      ......|.++|+++.++|+....|++++ |.+|+||.....     ..++.
T Consensus       362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~-----~~Pl~  435 (555)
T KOG1587|consen  362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI-----ASPLL  435 (555)
T ss_pred             eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC-----CCcch
Confidence            99999999999884433322111      2344578899999999998778888877 999999998721     57888


Q ss_pred             EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997          367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~  446 (496)
                      .+..+...|++++|||....+||++..||.|.|||+.....             ..+....-+....+.+.|++.+..++
T Consensus       436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-------------~Pv~s~~~~~~~l~~~~~s~~g~~la  502 (555)
T KOG1587|consen  436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-------------EPVLSQKVCSPALTRVRWSPNGKLLA  502 (555)
T ss_pred             hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-------------CCcccccccccccceeecCCCCcEEE
Confidence            88888889999999999999999999999999999987421             22222223355667888888776544


Q ss_pred             EEecCCCCCCCCCCeEEEeecCCCCcCCchH
Q 010997          447 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE  477 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~  477 (496)
                              .|...|++++|++.+.+..+.++
T Consensus       503 --------vGd~~G~~~~~~l~~~l~~~~~~  525 (555)
T KOG1587|consen  503 --------VGDANGTTHILKLSESLAVPSPN  525 (555)
T ss_pred             --------EecCCCcEEEEEcCchhhccCcc
Confidence                    55567999999998776665553

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.89  E-value=7.3e-22  Score=168.45  Aligned_cols=217  Identities=21%  Similarity=0.396  Sum_probs=170.0

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEEec
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGG  215 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~sg~  215 (496)
                      .|-|.|+|+.|.| ++.-+|+-. |..|.+|+++..........      ...-.+|.. ..++-+|+|  +++.+++.+
T Consensus       121 eavg~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~------ss~s~e~~~-~ftsg~WspHHdgnqv~tt~  191 (370)
T KOG1007|consen  121 EAVGKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVL------SSESAEMRH-SFTSGAWSPHHDGNQVATTS  191 (370)
T ss_pred             HHhCceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeec------ccccccccc-eecccccCCCCccceEEEeC
Confidence            4567999999999 777787766 77999999998754211110      001112333 357788998  577777766


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                       |+++..||+++.....                                       .+-..|...|.++.|+|+...+|+
T Consensus       192 -d~tl~~~D~RT~~~~~---------------------------------------sI~dAHgq~vrdlDfNpnkq~~lv  231 (370)
T KOG1007|consen  192 -DSTLQFWDLRTMKKNN---------------------------------------SIEDAHGQRVRDLDFNPNKQHILV  231 (370)
T ss_pred             -CCcEEEEEccchhhhc---------------------------------------chhhhhcceeeeccCCCCceEEEE
Confidence             8999999998654322                                       223468889999999999988999


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC---------------
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---------------  360 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~---------------  360 (496)
                      +|++||.|+|||.|..+.| +..+.+|...|.++.|+|...+++++|+.|..|.+|...+..+..               
T Consensus       232 t~gDdgyvriWD~R~tk~p-v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~d  310 (370)
T KOG1007|consen  232 TCGDDGYVRIWDTRKTKFP-VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDED  310 (370)
T ss_pred             EcCCCccEEEEeccCCCcc-ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchh
Confidence            9999999999999998865 566789999999999999889999999999999999876533110               


Q ss_pred             --------CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          361 --------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       361 --------~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                              ....+.++..|...|++++||.-.+++||+-+.||++.|=.+..
T Consensus       311 seer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  311 SEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             hHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                    12345578889999999999999999999999999999877654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.89  E-value=3.5e-21  Score=164.49  Aligned_cols=295  Identities=16%  Similarity=0.187  Sum_probs=204.9

Q ss_pred             EEEecCCCceeEEEecC--CCCcEEEEEeC----CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC
Q 010997          134 HKTIIHPGEVNRIRELP--QNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT  207 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p--~~~~~lat~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~  207 (496)
                      +-...-+-.+.++.|+.  ..+..||.|+.    ...|.|-.+.......        ..... -.|.- +++.+.|.|+
T Consensus        38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~--------~~~a~-fd~~Y-P~tK~~wiPd  107 (364)
T KOG0290|consen   38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGEL--------VEDAN-FDHPY-PVTKLMWIPD  107 (364)
T ss_pred             EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCce--------eccCC-CCCCC-CccceEecCC
Confidence            33444455678888873  45567888875    3456666555321110        11111 23444 6889999998


Q ss_pred             CC-----ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCcee
Q 010997          208 EP-----YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE  282 (496)
Q Consensus       208 ~~-----~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  282 (496)
                      ..     +|||++  -.+|+|.+............                           +.    ...-..+..+++
T Consensus       108 ~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~---------------------------L~----~~kns~~~aPlT  154 (364)
T KOG0290|consen  108 SKGVYPDLLATSS--DFLRLWRIGDEESRVELQSV---------------------------LN----NNKNSEFCAPLT  154 (364)
T ss_pred             ccccCcchhhccc--CeEEEEeccCcCCceehhhh---------------------------hc----cCcccccCCccc
Confidence            53     566654  48999998742111100000                           00    011224567999


Q ss_pred             EEEEccCCCceEEEEcCCCeEEEEEccCCC-ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997          283 DVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  361 (496)
Q Consensus       283 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~  361 (496)
                      +..|+.-.++++.+++-|.+..|||+.++. ..+...+.+|...|..|+|....-++||+.+.||.||+||+|.+..   
T Consensus       155 SFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH---  231 (364)
T KOG0290|consen  155 SFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH---  231 (364)
T ss_pred             ccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc---
Confidence            999999888999999999999999999873 2245566799999999999985678999999999999999998653   


Q ss_pred             CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                      ...+.+-.....+...++|++...+++|+-..| ..|.|-|++..              ...+..+.+|.+.|+.++|.|
T Consensus       232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P--------------~tpva~L~~H~a~VNgIaWaP  297 (364)
T KOG0290|consen  232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP--------------CTPVARLRNHQASVNGIAWAP  297 (364)
T ss_pred             ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC--------------CcceehhhcCcccccceEecC
Confidence            122332223356789999999988888877665 47999999874              356777899999999999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          441 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       441 ~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .....++||++|       ..+.|||+..........++-... -.+.|..+.|+|
T Consensus       298 hS~~hictaGDD-------~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~  345 (364)
T KOG0290|consen  298 HSSSHICTAGDD-------CQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS  345 (364)
T ss_pred             CCCceeeecCCc-------ceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence            998888866665       899999998543322333444444 456788888875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=5.7e-21  Score=179.94  Aligned_cols=252  Identities=12%  Similarity=0.137  Sum_probs=172.5

Q ss_pred             cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEecCCccccc
Q 010997          154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSS  232 (496)
Q Consensus       154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~~~~~~~  232 (496)
                      +++++++.|+.|++||+.++            +....+.++..  +.+++|+|+++.+ ++++.++.|++||..++... 
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~------------~~~~~~~~~~~--~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~-   66 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL------------EVTRTFPVGQR--PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI-   66 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC------------ceEEEEECCCC--CCceEECCCCCEEEEEECCCCeEEEEECCCCcEE-
Confidence            57899999999999999877            45566666654  5789999999876 57788999999998754321 


Q ss_pred             cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC
Q 010997          233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT  312 (496)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~  312 (496)
                                                             ..+..+. .+..++|+|++..++++++.++.|++||+++..
T Consensus        67 ---------------------------------------~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        67 ---------------------------------------GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             ---------------------------------------EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence                                                   1222222 245788999985455666778999999998765


Q ss_pred             ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC-cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEE
Q 010997          313 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS  391 (496)
Q Consensus       313 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~  391 (496)
                        .+..+ .+...+.+++|+| ++.++++++.++ .+.+||.++      +..+..+. ....+..++|+|++..+++++
T Consensus       107 --~~~~~-~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866       107 --VLAEI-PVGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKT------YEIVDNVL-VDQRPRFAEFTADGKELWVSS  175 (300)
T ss_pred             --EEeEe-eCCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCC------CeEEEEEE-cCCCccEEEECCCCCEEEEEc
Confidence              33333 2334578899999 899999888775 567789876      44444433 233457899999999776676


Q ss_pred             eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe-cCCC--CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          392 AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHR--DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       392 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~--~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ..++.|.+||+.+.....           .+.+.. ..+.  .....++|+|++..++++.+.       ++.|.+||+.
T Consensus       176 ~~~~~v~i~d~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~-------~~~i~v~d~~  237 (300)
T TIGR03866       176 EIGGTVSVIDVATRKVIK-----------KITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP-------ANRVAVVDAK  237 (300)
T ss_pred             CCCCEEEEEEcCcceeee-----------eeeecccccccccCCccceEECCCCCEEEEEcCC-------CCeEEEEECC
Confidence            679999999998742110           000000 0011  123568899999887665433       3789999997


Q ss_pred             CCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          469 DLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       469 ~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                            +++.+..+ .+...+.+++|+|
T Consensus       238 ------~~~~~~~~-~~~~~~~~~~~~~  258 (300)
T TIGR03866       238 ------TYEVLDYL-LVGQRVWQLAFTP  258 (300)
T ss_pred             ------CCcEEEEE-EeCCCcceEEECC
Confidence                  33333222 2344678888887

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=8.2e-22  Score=179.73  Aligned_cols=222  Identities=17%  Similarity=0.274  Sum_probs=180.6

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  222 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i  222 (496)
                      -.|++... -..++++|+..+.|+|||+...            .....+.+|+. .|+++.++....|||+++..|.|.|
T Consensus        82 ~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~k------------l~hr~lkdh~s-tvt~v~YN~~DeyiAsvs~gGdiii  147 (673)
T KOG4378|consen   82 AFCVACAS-QSLYEISGGQSGCVKIWDLRAK------------LIHRFLKDHQS-TVTYVDYNNTDEYIASVSDGGDIII  147 (673)
T ss_pred             HHHHhhhh-cceeeeccCcCceeeehhhHHH------------HHhhhccCCcc-eeEEEEecCCcceeEEeccCCcEEE
Confidence            34444444 3369999999999999999865            45567899997 7999999999999999999999999


Q ss_pred             EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEEEEcCCC
Q 010997          223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      ..+.++...                                        ..|.. ....|.-+.|+|....+|.+++++|
T Consensus       148 h~~~t~~~t----------------------------------------t~f~~~sgqsvRll~ys~skr~lL~~asd~G  187 (673)
T KOG4378|consen  148 HGTKTKQKT----------------------------------------TTFTIDSGQSVRLLRYSPSKRFLLSIASDKG  187 (673)
T ss_pred             EecccCccc----------------------------------------cceecCCCCeEEEeecccccceeeEeeccCC
Confidence            998865432                                        12222 2345678999999878899999999


Q ss_pred             eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc
Q 010997          302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS  381 (496)
Q Consensus       302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s  381 (496)
                      .|.+||+.... |.......|..+...|+|+|.+..+|++.+.|..|.+||++.      ......+. ...+...|+|+
T Consensus       188 ~VtlwDv~g~s-p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s------~~s~~~l~-y~~Plstvaf~  259 (673)
T KOG4378|consen  188 AVTLWDVQGMS-PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS------QASTDRLT-YSHPLSTVAFS  259 (673)
T ss_pred             eEEEEeccCCC-cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc------ccccceee-ecCCcceeeec
Confidence            99999997655 556667789999999999998889999999999999999997      44444444 46788999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       382 p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      ++|.+ |+.|...|.|..||++..              ..++.....|...|++++|-|.
T Consensus       260 ~~G~~-L~aG~s~G~~i~YD~R~~--------------k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  260 ECGTY-LCAGNSKGELIAYDMRST--------------KAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             CCceE-EEeecCCceEEEEecccC--------------CCCceEeeecccceeEEEeeec
Confidence            99985 679999999999999974              2445567788999999999874

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=5.9e-22  Score=179.11  Aligned_cols=220  Identities=19%  Similarity=0.247  Sum_probs=174.5

Q ss_pred             CceEEecCCCCcceeeeecCCCC--ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997          187 PDLILTGHQDNAEFALAMCPTEP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  264 (496)
Q Consensus       187 ~~~~l~~h~~~~v~~l~~~p~~~--~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (496)
                      .....+-+.. .|++++|+|..+  .+|+|+.-|.|-+||+.+..                                   
T Consensus       178 ~~~v~kv~~~-Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-----------------------------------  221 (498)
T KOG4328|consen  178 ILNVAKVTDR-RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-----------------------------------  221 (498)
T ss_pred             ecceeEeccc-ceEEEEecccCcceEEEEccCCCcEEEEecCCCC-----------------------------------
Confidence            3345566666 699999999754  78899999999999996321                                   


Q ss_pred             CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997          265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~  344 (496)
                       .....+..+..|..+|.+|.|+|.+...+++.+.||+|++-|+.......+.........+..+.|+. ....++.|..
T Consensus       222 -~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~  299 (498)
T KOG4328|consen  222 -KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDN  299 (498)
T ss_pred             -CccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeec
Confidence             12223467788999999999999998899999999999999998876444444434556778888888 6677777777


Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  424 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  424 (496)
                      =|...+||+|+..     .....+.-|...|.+|+++|..+++|||+|.|++++|||++......           ..+.
T Consensus       300 ~G~f~~iD~R~~~-----s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----------sp~l  363 (498)
T KOG4328|consen  300 VGNFNVIDLRTDG-----SEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----------SPFL  363 (498)
T ss_pred             ccceEEEEeecCC-----ccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC-----------Ccce
Confidence            7799999999843     33556677888999999999999999999999999999999853211           1245


Q ss_pred             EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ....|...|.+..|+|.+..++        |.+.|+.|+|||.+
T Consensus       364 st~~HrrsV~sAyFSPs~gtl~--------TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  364 STLPHRRSVNSAYFSPSGGTLL--------TTCQDNEIRVFDSS  399 (498)
T ss_pred             ecccccceeeeeEEcCCCCceE--------eeccCCceEEeecc
Confidence            5678999999999999998865        55556999999985

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=1.2e-20  Score=172.49  Aligned_cols=269  Identities=21%  Similarity=0.364  Sum_probs=189.4

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  220 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i  220 (496)
                      .-|.|++|.+ +++ ++||..+|.|.||+..+.            +.......|.+ .|++|+...+|. |+||++|+.|
T Consensus       247 k~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~------------~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki  310 (626)
T KOG2106|consen  247 KFVLCVTFLE-NGD-VITGDSGGNILIWSKGTN------------RISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKI  310 (626)
T ss_pred             eEEEEEEEcC-CCC-EEeecCCceEEEEeCCCc------------eEEeEeeecCC-ceEEEEEecCcc-EeecCccceE
Confidence            6799999999 765 669999999999999766            33444448887 699999998886 5569999999


Q ss_pred             EEEecCCccccccCCc------cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          221 VLWSIQDHITSSATDP------ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      ..||-. .........      ......+... ++. +..  ...+ +.............+|.+....++.+|+. ..+
T Consensus       311 ~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~d-i~v-GTt--rN~i-L~Gt~~~~f~~~v~gh~delwgla~hps~-~q~  383 (626)
T KOG2106|consen  311 ILWDDN-YRKLRETELPEQFGPIRTVAEGKGD-ILV-GTT--RNFI-LQGTLENGFTLTVQGHGDELWGLATHPSK-NQL  383 (626)
T ss_pred             Eecccc-ccccccccCchhcCCeeEEecCCCc-EEE-eec--cceE-EEeeecCCceEEEEecccceeeEEcCCCh-hhe
Confidence            999932 111111110      0000111111 110 000  0000 00111122234556899999999999998 789


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      +|++.|+.+++|+  ..+  .... ..-..++.|++|+| .+ .+|.|+..|...+.|..+       ..+.++.....+
T Consensus       384 ~T~gqdk~v~lW~--~~k--~~wt-~~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~-------~~lv~~~~d~~~  449 (626)
T KOG2106|consen  384 LTCGQDKHVRLWN--DHK--LEWT-KIIEDPAECADFHP-SG-VVAVGTATGRWFVLDTET-------QDLVTIHTDNEQ  449 (626)
T ss_pred             eeccCcceEEEcc--CCc--eeEE-EEecCceeEeeccC-cc-eEEEeeccceEEEEeccc-------ceeEEEEecCCc
Confidence            9999999999999  222  2222 34567899999999 67 999999999999999998       334444444899


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  454 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~  454 (496)
                      ++.++|+|+|. +||.|+.|+.|+||-+...+...           .......|  .+|+.+.|++++.++.        
T Consensus       450 ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y-----------~r~~k~~g--s~ithLDwS~Ds~~~~--------  507 (626)
T KOG2106|consen  450 LSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKY-----------SRVGKCSG--SPITHLDWSSDSQFLV--------  507 (626)
T ss_pred             eEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEE-----------EEeeeecC--ceeEEeeecCCCceEE--------
Confidence            99999999999 57999999999999998864432           22333344  8999999999888766        


Q ss_pred             CCCCCCeEEEeecC
Q 010997          455 STGGGGTLQIWRMS  468 (496)
Q Consensus       455 sgg~Dg~i~iw~~~  468 (496)
                      +.+.|-.|-.|...
T Consensus       508 ~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  508 SNSGDYEILYWKPS  521 (626)
T ss_pred             eccCceEEEEEccc
Confidence            55556899999655

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=9.6e-22  Score=169.93  Aligned_cols=219  Identities=18%  Similarity=0.289  Sum_probs=163.8

Q ss_pred             eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997          189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  268 (496)
Q Consensus       189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (496)
                      ..|.||.+ .|++++|+.||++|+|++.|++|++|++++-......                                  
T Consensus        80 ~~LKgH~~-~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr----------------------------------  124 (420)
T KOG2096|consen   80 SVLKGHKK-EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR----------------------------------  124 (420)
T ss_pred             hhhhccCC-ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhh----------------------------------
Confidence            36789998 6999999999999999999999999999863211000                                  


Q ss_pred             CCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc---c--c-----eeeeccCCCCeEEEEecCCCCcE
Q 010997          269 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---P--V-----IKVEKAHDADLHCVDWNPLDDNL  338 (496)
Q Consensus       269 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~--~-----~~~~~~~~~~v~~i~~sp~~~~~  338 (496)
                       .++ ..-..+..+.+.|.||...+++++-...++++|-+...+.   +  .     ......|...+..+-... ++.+
T Consensus       125 -~~R-~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~  201 (420)
T KOG2096|consen  125 -CIR-QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKY  201 (420)
T ss_pred             -Hhh-ccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceE
Confidence             000 0111234678899999988888888889999998764331   1  1     112234566777777776 7899


Q ss_pred             EEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCC
Q 010997          339 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNY  418 (496)
Q Consensus       339 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~  418 (496)
                      |++++.|..|.|||++       ++.+..+......-+..+.||+|++ +|+++----|++|.+--...-.-       .
T Consensus       202 imsas~dt~i~lw~lk-------Gq~L~~idtnq~~n~~aavSP~GRF-ia~~gFTpDVkVwE~~f~kdG~f-------q  266 (420)
T KOG2096|consen  202 IMSASLDTKICLWDLK-------GQLLQSIDTNQSSNYDAAVSPDGRF-IAVSGFTPDVKVWEPIFTKDGTF-------Q  266 (420)
T ss_pred             EEEecCCCcEEEEecC-------CceeeeeccccccccceeeCCCCcE-EEEecCCCCceEEEEEeccCcch-------h
Confidence            9999999999999999       5888888877777888999999995 56777767799999754221110       2


Q ss_pred             CCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          419 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       419 ~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .....|.+.||...|..++|+++...++        |.+.||+++|||..
T Consensus       267 ev~rvf~LkGH~saV~~~aFsn~S~r~v--------tvSkDG~wriwdtd  308 (420)
T KOG2096|consen  267 EVKRVFSLKGHQSAVLAAAFSNSSTRAV--------TVSKDGKWRIWDTD  308 (420)
T ss_pred             hhhhhheeccchhheeeeeeCCCcceeE--------EEecCCcEEEeecc
Confidence            2356788999999999999999877654        45556999999985

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.88  E-value=4.3e-21  Score=181.84  Aligned_cols=304  Identities=18%  Similarity=0.303  Sum_probs=216.0

Q ss_pred             cceEEEecCCCceeEEEecCCC--CcEEEEEeCCCcEEEEeCCCCCCccc---------cCCCCC----------CCCce
Q 010997          131 VKKHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHA---------VLGATN----------SRPDL  189 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p~~--~~~lat~~~dg~i~iwd~~~~~~~~~---------~~~~~~----------~~~~~  189 (496)
                      .......||.+.|..++|....  .-+||+++.|..|+||.+.-......         ......          .....
T Consensus       182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea  261 (764)
T KOG1063|consen  182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA  261 (764)
T ss_pred             eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence            3456678999999999998743  35899999999999998765431110         000000          01112


Q ss_pred             EEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcC
Q 010997          190 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG  269 (496)
Q Consensus       190 ~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (496)
                      .+.||.+ .|+++.|+|.+..|+|++.|+++.+|...+..-......                                 
T Consensus       262 ll~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v---------------------------------  307 (764)
T KOG1063|consen  262 LLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV---------------------------------  307 (764)
T ss_pred             hhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE---------------------------------
Confidence            3469998 799999999999999999999999998764321110000                                 


Q ss_pred             CeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC-ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcE
Q 010997          270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  348 (496)
Q Consensus       270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i  348 (496)
                      .+....+......+..|+|++ +.+++-+..|..++|-..... ........+|...|..|+|+| .|.+|++.+.|-+-
T Consensus       308 RlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTT  385 (764)
T KOG1063|consen  308 RLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTT  385 (764)
T ss_pred             EeecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccce
Confidence            001122445668899999998 789999999999999833221 122334568999999999999 89999999999888


Q ss_pred             EEEeCC--------------------CC---C-C----------------------------------------------
Q 010997          349 RMFDRR--------------------NL---T-S----------------------------------------------  358 (496)
Q Consensus       349 ~iwd~~--------------------~~---~-~----------------------------------------------  358 (496)
                      |+|-.-                    ..   . .                                              
T Consensus       386 RlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~Vp  465 (764)
T KOG1063|consen  386 RLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVP  465 (764)
T ss_pred             eeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccc
Confidence            876322                    00   0 0                                              


Q ss_pred             -----C---------C--------------------------------CCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997          359 -----N---------G--------------------------------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       359 -----~---------~--------------------------------~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~  392 (496)
                           +         .                                ....++++-+|...|++++.+|++. ++||++
T Consensus       466 aLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaC  544 (764)
T KOG1063|consen  466 ALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASAC  544 (764)
T ss_pred             cccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehh
Confidence                 0         0                                0111223347899999999999998 788887


Q ss_pred             CC-----CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          393 ED-----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       393 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      ..     ..|++|+.....               ....+.+|.-.|+.++|||++.+|+        +.+.|.++.+|..
T Consensus       545 KS~~~ehAvI~lw~t~~W~---------------~~~~L~~HsLTVT~l~FSpdg~~LL--------svsRDRt~sl~~~  601 (764)
T KOG1063|consen  545 KSSLKEHAVIRLWNTANWL---------------QVQELEGHSLTVTRLAFSPDGRYLL--------SVSRDRTVSLYEV  601 (764)
T ss_pred             hhCCccceEEEEEeccchh---------------hhheecccceEEEEEEECCCCcEEE--------EeecCceEEeeee
Confidence            53     459999998862               2335789999999999999998876        5555699999998


Q ss_pred             CCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          468 SDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       468 ~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .+.+.  ..-..+.++.|+..|++++|+|
T Consensus       602 ~~~~~--~e~~fa~~k~HtRIIWdcsW~p  628 (764)
T KOG1063|consen  602 QEDIK--DEFRFACLKAHTRIIWDCSWSP  628 (764)
T ss_pred             ecccc--hhhhhccccccceEEEEcccCc
Confidence            75432  1222555899999999999998

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.6e-21  Score=167.39  Aligned_cols=251  Identities=19%  Similarity=0.329  Sum_probs=180.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceEEecCCCcEEEEecCCcccc
Q 010997          154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      ..+|++...|+|++||..++            +.+..+.+|.. .+..+.|..+  ...+.+|+.||+|++||++.....
T Consensus        41 ~~vav~lSngsv~lyd~~tg------------~~l~~fk~~~~-~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~  107 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG------------QLLEEFKGPPA-TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES  107 (376)
T ss_pred             eeEEEEecCCeEEEEeccch------------hhhheecCCCC-cccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence            57889999999999999997            55667888887 6788888763  457889999999999999864332


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC-CceeEEEEccCCCceEEEEc----CCCeEEEE
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVTFCPSSAQEFCSVG----DDSCLILW  306 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~----~dg~i~iw  306 (496)
                      .                                      ...+..+. .+..+++....+ +++++|.    .+-.|.+|
T Consensus       108 a--------------------------------------~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lw  148 (376)
T KOG1188|consen  108 A--------------------------------------RISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLW  148 (376)
T ss_pred             h--------------------------------------heeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEE
Confidence            1                                      12233333 345566665454 5677764    36789999


Q ss_pred             EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC-C
Q 010997          307 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-S  385 (496)
Q Consensus       307 d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~-~  385 (496)
                      |+|..+.+.......|.+.|+++.|+|.+.++|++||.||-|.|||+.....   ...+...-.|...|.++.|+.++ .
T Consensus       149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E---eDaL~~viN~~sSI~~igw~~~~yk  225 (376)
T KOG1188|consen  149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE---EDALLHVINHGSSIHLIGWLSKKYK  225 (376)
T ss_pred             EeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc---hhhHHHhhcccceeeeeeeecCCcc
Confidence            9999886556666789999999999999999999999999999999987432   23344444578889999999887 2


Q ss_pred             CEEEEEeCCCcEEEEECCCCCcccCCCCCC-------------------------------CCCCCeeE-----------
Q 010997          386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-------------------------------TNYPAGLF-----------  423 (496)
Q Consensus       386 ~llas~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~~~~~~~-----------  423 (496)
                      .|+ +-+......+|++....+....+...                               ...-...+           
T Consensus       226 rI~-clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~  304 (376)
T KOG1188|consen  226 RIM-CLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSL  304 (376)
T ss_pred             eEE-EEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccc
Confidence            254 77778899999998855332222110                               00000001           


Q ss_pred             ----EE-ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          424 ----FQ-HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       424 ----~~-~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                          .. ..+|...|.++.|.-.+..++        |||.||.+++|...
T Consensus       305 ~~~~a~l~g~~~eiVR~i~~~~~~~~l~--------TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  305 LTEPAILQGGHEEIVRDILFDVKNDVLY--------TGGEDGLLQAWKVE  346 (376)
T ss_pred             cCccccccCCcHHHHHHHhhhcccceee--------ccCCCceEEEEecC
Confidence                11 234667788888887666666        88888999999954

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.87  E-value=1.3e-21  Score=183.26  Aligned_cols=122  Identities=16%  Similarity=0.413  Sum_probs=102.3

Q ss_pred             CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC-CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997          325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS-NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  403 (496)
Q Consensus       325 ~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~  403 (496)
                      .|+.+.|+|++...||+++.||.|+||.+..... .....+-..+..|...|+++.|+|-...+||+++.|.+|++||+.
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            4678899999999999999999999999876432 112356677889999999999999877789999999999999999


Q ss_pred             CCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          404 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      ..               .....+.||.+.|.+++|+|+|..+ |       |.+.||+|+||+.+.
T Consensus       709 ~~---------------~~~~~l~gHtdqIf~~AWSpdGr~~-A-------tVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  709 NA---------------KLYSRLVGHTDQIFGIAWSPDGRRI-A-------TVCKDGTLRVYEPRS  751 (1012)
T ss_pred             hh---------------hhhheeccCcCceeEEEECCCCcce-e-------eeecCceEEEeCCCC
Confidence            85               3445678999999999999988764 5       555569999999984

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.7e-21  Score=180.73  Aligned_cols=278  Identities=15%  Similarity=0.245  Sum_probs=197.8

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ....|.+.|..++|.| ....|++++.||.|.+|+++....    ......+++.+|++|.+ +|.|+++.+++.++++|
T Consensus       289 tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~----s~~~~~epi~tfraH~g-PVl~v~v~~n~~~~ysg  362 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKK----SAEKDVEPILTFRAHEG-PVLCVVVPSNGEHCYSG  362 (577)
T ss_pred             eeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCC----ccccceeeeEEEecccC-ceEEEEecCCceEEEee
Confidence            6678999999999999 556899999999999999954211    11234588999999998 79999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.||+|+.|++..........                              ........+.||.+.|+.+++|+.. ..|
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~------------------------------dp~vl~~~l~Ghtdavw~l~~s~~~-~~L  411 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSY------------------------------DPSVLSGTLLGHTDAVWLLALSSTK-DRL  411 (577)
T ss_pred             ccCceeeeeccCCCCCccccc------------------------------Ccchhccceeccccceeeeeecccc-cce
Confidence            999999999875221100000                              0111235688999999999999987 679


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc----
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----  370 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~----  370 (496)
                      ++|+.||++++|+...... +............++++-.......++...-+.-.++|+..      ...+..+..    
T Consensus       412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev------~s~~~~~~s~~~~  484 (577)
T KOG0642|consen  412 LSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV------VSDLLIFESSASP  484 (577)
T ss_pred             eeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh------hhheeeccccCCC
Confidence            9999999999999877662 22222222234455666441222333333333333444443      222333321    


Q ss_pred             ---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          371 ---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       371 ---h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                         ....+..+.++|.... ..++..|+.|+++|..+.               .+++....|...|+++++.|+|.+++ 
T Consensus       485 ~~~~~~~in~vVs~~~~~~-~~~~hed~~Ir~~dn~~~---------------~~l~s~~a~~~svtslai~~ng~~l~-  547 (577)
T KOG0642|consen  485 GPRRYPQINKVVSHPTADI-TFTAHEDRSIRFFDNKTG---------------KILHSMVAHKDSVTSLAIDPNGPYLM-  547 (577)
T ss_pred             cccccCccceEEecCCCCe-eEecccCCceeccccccc---------------ccchheeeccceecceeecCCCceEE-
Confidence               1245788999999984 559999999999999885               56777788999999999999999987 


Q ss_pred             EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  486 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~  486 (496)
                             +|+.|+.+++|.+.      ...++.+...|.
T Consensus       548 -------s~s~d~sv~l~kld------~k~~~~es~~~r  573 (577)
T KOG0642|consen  548 -------SGSHDGSVRLWKLD------VKTCVLESTAHR  573 (577)
T ss_pred             -------eecCCceeehhhcc------chheeecccccc
Confidence                   78888999999997      344444444443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.87  E-value=1.4e-19  Score=175.04  Aligned_cols=312  Identities=15%  Similarity=0.176  Sum_probs=221.6

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ce
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YV  211 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l  211 (496)
                      +....++...|+++.-+| --+++|.|..+|+|.|+++..+            +.+.+++...+ .|+.++|.-||+ .|
T Consensus       195 v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~d------------kil~sFk~d~g-~VtslSFrtDG~p~l  260 (910)
T KOG1539|consen  195 VYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFD------------KILMSFKQDWG-RVTSLSFRTDGNPLL  260 (910)
T ss_pred             EEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccC------------cEEEEEEcccc-ceeEEEeccCCCeeE
Confidence            455667889999999999 7789999999999999999988            66677776544 799999999987 67


Q ss_pred             EEecCCCcEEEEecCCccccccCCcccccc-----CCCCCceeccCCCCCCCCCCCCCCCCc--CCeeeeecCCCceeEE
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKS-----AGSSGSIIKQSPKPGDGNDKAADGPSV--GPRGIYNGHEDTVEDV  284 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~l  284 (496)
                      ++|+..|.+.+||++...............     .-....+.............+.+...+  ..++.-.||..+..++
T Consensus       261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~i  340 (910)
T KOG1539|consen  261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCI  340 (910)
T ss_pred             EeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhe
Confidence            788888999999999875543332211000     000000111111111122222233333  4455667899999999


Q ss_pred             EEccCCCceEEEEcCCCeEEEEEccCCCc--------------------------cc-----------------------
Q 010997          285 TFCPSSAQEFCSVGDDSCLILWDARVGTS--------------------------PV-----------------------  315 (496)
Q Consensus       285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------~~-----------------------  315 (496)
                      .|.-.....+.+++.|++++.+++.....                          +.                       
T Consensus       341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~  420 (910)
T KOG1539|consen  341 RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKG  420 (910)
T ss_pred             eeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecC
Confidence            99855558888999998888887642110                          00                       


Q ss_pred             ---------------eeee-----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe---ccCC
Q 010997          316 ---------------IKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF---EGHS  372 (496)
Q Consensus       316 ---------------~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~---~~h~  372 (496)
                                     ...+     +.....+++++.++ .|++.+.|+..|.|-+|++++      +....++   ..|.
T Consensus       421 ~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQS------Gi~r~sf~~~~ah~  493 (910)
T KOG1539|consen  421 KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQS------GIHRKSFGDSPAHK  493 (910)
T ss_pred             cceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEccc------CeeecccccCcccc
Confidence                           0000     01125678889999 999999999999999999999      7777777   4899


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      .+|+.++...-++ ++++++.+|.+++||..+.               .++..+. -...+..+..+.... ++|.+.+ 
T Consensus       494 ~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k---------------~l~~~l~-l~~~~~~iv~hr~s~-l~a~~~d-  554 (910)
T KOG1539|consen  494 GEVTGLAVDGTNR-LLVSAGADGILKFWDFKKK---------------VLKKSLR-LGSSITGIVYHRVSD-LLAIALD-  554 (910)
T ss_pred             CceeEEEecCCCc-eEEEccCcceEEEEecCCc---------------ceeeeec-cCCCcceeeeeehhh-hhhhhcC-
Confidence            9999999988877 5679999999999999874               1222221 233566677776544 4443333 


Q ss_pred             CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                            |-.|+++|+.      +...++++.+|.+.|++++|||
T Consensus       555 ------df~I~vvD~~------t~kvvR~f~gh~nritd~~FS~  586 (910)
T KOG1539|consen  555 ------DFSIRVVDVV------TRKVVREFWGHGNRITDMTFSP  586 (910)
T ss_pred             ------ceeEEEEEch------hhhhhHHhhccccceeeeEeCC
Confidence                  4899999999      8899999999999999999998

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.87  E-value=6.1e-20  Score=159.22  Aligned_cols=246  Identities=16%  Similarity=0.282  Sum_probs=178.9

Q ss_pred             cCCCceeEEEecC------CCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC--cceeeeecCCCC
Q 010997          138 IHPGEVNRIRELP------QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCPTEP  209 (496)
Q Consensus       138 ~h~~~V~~l~~~p------~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~--~v~~l~~~p~~~  209 (496)
                      ...+.|....|-|      .+.+++|+.+.+.-|.+||.-++..+...          ..-.|.+.  +-.+|+|+|||.
T Consensus       102 ~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy----------~~ydh~de~taAhsL~Fs~DGe  171 (406)
T KOG2919|consen  102 QEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY----------RAYDHQDEYTAAHSLQFSPDGE  171 (406)
T ss_pred             ccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccch----------hhhhhHHhhhhheeEEecCCCC
Confidence            3455677666642      26789999999999999999998443322          11223221  236899999999


Q ss_pred             ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      +|++|. .+.|+++|+...-......+                              +  ..+.-.+..+-|.+++|+|.
T Consensus       172 qlfaGy-krcirvFdt~RpGr~c~vy~------------------------------t--~~~~k~gq~giisc~a~sP~  218 (406)
T KOG2919|consen  172 QLFAGY-KRCIRVFDTSRPGRDCPVYT------------------------------T--VTKGKFGQKGIISCFAFSPM  218 (406)
T ss_pred             eEeecc-cceEEEeeccCCCCCCcchh------------------------------h--hhcccccccceeeeeeccCC
Confidence            998776 68999999953221110000                              0  00112245678899999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCCceEe
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      ....++.|+....+-||.-....  .+..+.+|.+.|+.+.|.+ +++.|.+|+. |-.|..||+|..     ..++..+
T Consensus       219 ~~~~~a~gsY~q~~giy~~~~~~--pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~-----~~pv~~L  290 (406)
T KOG2919|consen  219 DSKTLAVGSYGQRVGIYNDDGRR--PLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYS-----RDPVYAL  290 (406)
T ss_pred             CCcceeeecccceeeeEecCCCC--ceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhc-----cchhhhh
Confidence            87899999999999999876666  5666779999999999999 8888888876 678999999985     4778888


Q ss_pred             ccCCC-CEEEEEE--cCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997          369 EGHSA-AVLCVQW--SPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT  445 (496)
Q Consensus       369 ~~h~~-~i~~l~~--sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l  445 (496)
                      ..|.. .=..|.|  .|+++ +||+|+.||.|++||+...+.+              ...+..|..-|+.++++|.-+ +
T Consensus       291 ~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~gn~--------------~sv~~~~sd~vNgvslnP~mp-i  354 (406)
T KOG2919|consen  291 ERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLGNE--------------VSVTGNYSDTVNGVSLNPIMP-I  354 (406)
T ss_pred             hhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCCCc--------------ccccccccccccceecCcccc-e
Confidence            87766 3334444  57888 6789999999999999986432              233566788999999999754 5


Q ss_pred             EEEec
Q 010997          446 VVSVS  450 (496)
Q Consensus       446 ~~s~s  450 (496)
                      +|+++
T Consensus       355 latss  359 (406)
T KOG2919|consen  355 LATSS  359 (406)
T ss_pred             eeecc
Confidence            55554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=1.6e-20  Score=163.21  Aligned_cols=257  Identities=21%  Similarity=0.340  Sum_probs=187.2

Q ss_pred             cCCCceeEEEecCC---CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEE
Q 010997          138 IHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLS  213 (496)
Q Consensus       138 ~h~~~V~~l~~~p~---~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~s  213 (496)
                      .|...-..++|+-+   ..-++|.|+.-|.|+|.|+.++            +....+.+|.. +|+.+.++|+. +++++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~------------~~~~~~~ghG~-sINeik~~p~~~qlvls  153 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG------------QCSKNYRGHGG-SINEIKFHPDRPQLVLS  153 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh------------hhccceeccCc-cchhhhcCCCCCcEEEE
Confidence            35555566666541   2348888889999999999988            66778999988 79999999985 58999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      ||.|.+|++|++++..+...+                                     .-+.+|.+.|.++.|++++ .+
T Consensus       154 ~SkD~svRlwnI~~~~Cv~Vf-------------------------------------GG~egHrdeVLSvD~~~~g-d~  195 (385)
T KOG1034|consen  154 ASKDHSVRLWNIQTDVCVAVF-------------------------------------GGVEGHRDEVLSVDFSLDG-DR  195 (385)
T ss_pred             ecCCceEEEEeccCCeEEEEe-------------------------------------cccccccCcEEEEEEcCCC-Ce
Confidence            999999999999987664332                                     2356899999999999999 69


Q ss_pred             EEEEcCCCeEEEEEccCCCc--------------------------cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc
Q 010997          294 FCSVGDDSCLILWDARVGTS--------------------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  347 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~  347 (496)
                      |++|+.|.+|++|++...+.                          |...+...|...|-|+.|-   ++++++-+.++.
T Consensus       196 i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscena  272 (385)
T KOG1034|consen  196 IASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENA  272 (385)
T ss_pred             eeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCce
Confidence            99999999999999984320                          1111234577788888884   689999999999


Q ss_pred             EEEEeCCCCCCC--------CCCCCceEeccCCCCEEEEE--EcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCC
Q 010997          348 VRMFDRRNLTSN--------GVGSPINKFEGHSAAVLCVQ--WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  417 (496)
Q Consensus       348 i~iwd~~~~~~~--------~~~~~~~~~~~h~~~i~~l~--~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~  417 (496)
                      |..|-.-.+...        .....+.++......|.-+.  |.|-++ +||.|...|.|.+||++.....         
T Consensus       273 I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep~---------  342 (385)
T KOG1034|consen  273 IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEPP---------  342 (385)
T ss_pred             EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCCc---------
Confidence            999987433211        11233455555556666555  456666 5789999999999999984211         


Q ss_pred             CCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          418 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       418 ~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                        ......+.-....|.+.+|+.++..+++.+ +       |++|.-||.-
T Consensus       343 --~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc-d-------d~~Vwrwdrv  383 (385)
T KOG1034|consen  343 --KCTTLTHSKSGSTVRQTSFSRDGSILVLVC-D-------DGTVWRWDRV  383 (385)
T ss_pred             --cCceEEeccccceeeeeeecccCcEEEEEe-C-------CCcEEEEEee
Confidence              122222333456799999999887666544 3       3888888753

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=1.1e-19  Score=161.65  Aligned_cols=215  Identities=22%  Similarity=0.351  Sum_probs=169.5

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEe
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG  214 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg  214 (496)
                      .-+|+++|..++|+|.+.+.||+|+.|.+|.||++.......     ....++..|.||+. .|..++|+|. .+.|+|+
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-----~ltepvv~L~gH~r-rVg~V~wHPtA~NVLlsa  150 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-----DLTEPVVELYGHQR-RVGLVQWHPTAPNVLLSA  150 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-----CcccceEEEeecce-eEEEEeecccchhhHhhc
Confidence            358999999999999999999999999999999998764332     23478899999998 6899999998 5689999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.|.+|.+||+.++...                                        ..+. |.+.|.++.|+.+| .+|
T Consensus       151 g~Dn~v~iWnv~tgeal----------------------------------------i~l~-hpd~i~S~sfn~dG-s~l  188 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEAL----------------------------------------ITLD-HPDMVYSMSFNRDG-SLL  188 (472)
T ss_pred             cCCceEEEEeccCCcee----------------------------------------eecC-CCCeEEEEEeccCC-cee
Confidence            99999999999876431                                        2333 99999999999999 799


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCC-CeEEEEecCCCCcEEEEEc---CCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWNPLDDNLILTGS---ADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~sgs---~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      ++.+.|..|+|||.|+++  .+....+|.+ .-..+.|-. ++.++-||-   .+..+.|||..++..   ...+.++..
T Consensus       189 ~TtckDKkvRv~dpr~~~--~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~e---P~~~~elDt  262 (472)
T KOG0303|consen  189 CTTCKDKKVRVIDPRRGT--VVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEE---PIALQELDT  262 (472)
T ss_pred             eeecccceeEEEcCCCCc--EeeecccccCCCcceeEEec-cCceeeeccccccccceeccCcccccC---cceeEEecc
Confidence            999999999999999998  4444446654 334455555 677555554   467899999988653   233445543


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                       .+.|.---|.|+...++++|-.|+.|+-|.+...
T Consensus       263 -SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  263 -SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             -CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence             4556666788888877778878999999999873

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.86  E-value=1.2e-19  Score=161.27  Aligned_cols=217  Identities=18%  Similarity=0.364  Sum_probs=169.6

Q ss_pred             eEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997          189 LILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  267 (496)
Q Consensus       189 ~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (496)
                      -.+.||++ +|..++|+|. ...|||||.|.+|.||.+-.....                                 ...
T Consensus        75 P~v~GHt~-~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~---------------------------------~~l  120 (472)
T KOG0303|consen   75 PLVCGHTA-PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT---------------------------------RDL  120 (472)
T ss_pred             CCccCccc-cccccccCccCCceeecCCCCceEEEEECCCcccc---------------------------------cCc
Confidence            35789998 7999999996 458999999999999998654321                                 122


Q ss_pred             cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  347 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~  347 (496)
                      .+++..+.+|...|.-++|||...++|++++.|.+|.+||+.++.  ....+. |..-|.++.|+. +|.+|++.+.|..
T Consensus       121 tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--ali~l~-hpd~i~S~sfn~-dGs~l~TtckDKk  196 (472)
T KOG0303|consen  121 TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--ALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKK  196 (472)
T ss_pred             ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--eeeecC-CCCeEEEEEecc-CCceeeeecccce
Confidence            366788999999999999999998999999999999999999998  455554 999999999999 9999999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceEeccCCCC-EEEEEEcCCCCCEEEEEe---CCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997          348 VRMFDRRNLTSNGVGSPINKFEGHSAA-VLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  423 (496)
Q Consensus       348 i~iwd~~~~~~~~~~~~~~~~~~h~~~-i~~l~~sp~~~~llas~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  423 (496)
                      |||||.|.      ++.+..-.+|.+. -..+.|-.++. ++.||-   .++.+-+||-....+            +..+
T Consensus       197 vRv~dpr~------~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~e------------P~~~  257 (472)
T KOG0303|consen  197 VRVIDPRR------GTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEE------------PIAL  257 (472)
T ss_pred             eEEEcCCC------CcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccC------------ccee
Confidence            99999999      8888888788763 45677888887 665553   378999999877522            2233


Q ss_pred             EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      ..+.. .+.|.-=-|.++...+.+       +|-.|+.|+-|.+.+.
T Consensus       258 ~elDt-SnGvl~PFyD~dt~ivYl-------~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  258 QELDT-SNGVLLPFYDPDTSIVYL-------CGKGDSSIRYFEITNE  296 (472)
T ss_pred             EEecc-CCceEEeeecCCCCEEEE-------EecCCcceEEEEecCC
Confidence            33333 334444446775555444       4455799999999753

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=6.1e-20  Score=154.90  Aligned_cols=289  Identities=13%  Similarity=0.190  Sum_probs=191.1

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~  215 (496)
                      +.+|.+.|+++.|.. ++ +|.+|..-|.|.+|++++.            +....+++|....|+.+.--|+ ..|.+-+
T Consensus        10 LRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~------------r~~~~~r~~g~~~it~lq~~p~-d~l~tqg   74 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTE------------RDLPLIRLFGRLFITNLQSIPN-DSLDTQG   74 (323)
T ss_pred             eccccchheehhhcc-ch-hhhcccccceEEEEEeecC------------ccchhhhhhccceeeceeecCC-cchhhcC
Confidence            349999999999977 44 4889999999999999998            6666778666657888888887 5688999


Q ss_pred             CCCcEEEEecCCccccccCCccc-----c--c-cCCCCCc--eeccCCCCCCCCCCCCCCCCcCCeeee----ecCCCce
Q 010997          216 KDKSVVLWSIQDHITSSATDPAT-----A--K-SAGSSGS--IIKQSPKPGDGNDKAADGPSVGPRGIY----NGHEDTV  281 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~-----~--~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v  281 (496)
                      +|+.+.+|++.............     .  . .......  ........ ......-+......+...    .+..+.+
T Consensus        75 Rd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg-sde~h~~D~g~~tqv~i~dd~~~~Klgsv  153 (323)
T KOG0322|consen   75 RDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG-SDETHKQDGGDTTQVQIADDSERSKLGSV  153 (323)
T ss_pred             CCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcc-cchhhhhccCccceeEccCchhccccCce
Confidence            99999999998632211110000     0  0 0000000  00000000 000111111111111111    1234566


Q ss_pred             eEEEEccC-CC-ceEEEEcCCCeEEEEEccCCCc--------cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEE
Q 010997          282 EDVTFCPS-SA-QEFCSVGDDSCLILWDARVGTS--------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  351 (496)
Q Consensus       282 ~~l~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iw  351 (496)
                      .+..+... +. -++++|-++|.+.+||+.++..        +.......|..+|.++.+.+ .-..=++|+.+..+..|
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDKLVMY  232 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCccccceee
Confidence            66665332 22 3567788999999999998631        12334457899999999988 55555778888889999


Q ss_pred             eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC
Q 010997          352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  431 (496)
Q Consensus       352 d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  431 (496)
                      .+......  ...-.++.-..-.|..+..-||++ ||||++.|++||||..++.               ..+..+.-|.+
T Consensus       233 Sl~~s~gs--lq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl---------------~pLAVLkyHsa  294 (323)
T KOG0322|consen  233 SLNHSTGS--LQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL---------------NPLAVLKYHSA  294 (323)
T ss_pred             eeccccCc--ccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC---------------Cchhhhhhhhc
Confidence            88763211  112222333455688999999998 8999999999999999986               45666778999


Q ss_pred             CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      .|++++|+|+.+ ++|       .+|.|++|.+|++
T Consensus       295 gvn~vAfspd~~-lmA-------aaskD~rISLWkL  322 (323)
T KOG0322|consen  295 GVNAVAFSPDCE-LMA-------AASKDARISLWKL  322 (323)
T ss_pred             ceeEEEeCCCCc-hhh-------hccCCceEEeeec
Confidence            999999999755 455       5566699999986

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.8e-19  Score=174.93  Aligned_cols=224  Identities=19%  Similarity=0.302  Sum_probs=176.2

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      |...|.+++.   ..+.|++|+.+++|.+|.+..+            .....+...+- ++.+++++.+|+++|.||.|-
T Consensus        55 ~g~~v~~ia~---~s~~f~~~s~~~tv~~y~fps~------------~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~  118 (933)
T KOG1274|consen   55 SGELVSSIAC---YSNHFLTGSEQNTVLRYKFPSG------------EEDTILARFTL-PIRDLAVSGSGKMIAAGSDDT  118 (933)
T ss_pred             cCceeEEEee---cccceEEeeccceEEEeeCCCC------------Cccceeeeeec-cceEEEEecCCcEEEeecCce
Confidence            7778888886   4458999999999999999887            22323333444 688999999999999999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .|++-+..+...                                        ...+.+|.++|.++.|+|.+ .+||+.+
T Consensus       119 ~vK~~~~~D~s~----------------------------------------~~~lrgh~apVl~l~~~p~~-~fLAvss  157 (933)
T KOG1274|consen  119 AVKLLNLDDSSQ----------------------------------------EKVLRGHDAPVLQLSYDPKG-NFLAVSS  157 (933)
T ss_pred             eEEEEeccccch----------------------------------------heeecccCCceeeeeEcCCC-CEEEEEe
Confidence            999999875322                                        37788999999999999999 8999999


Q ss_pred             CCCeEEEEEccCCCccceeeec--------cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-
Q 010997          299 DDSCLILWDARVGTSPVIKVEK--------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-  369 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~--------~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-  369 (496)
                      .||.|++||+.++.  +..++.        .....+..++|+| ++..||....|+.|++|+...      +.....+. 
T Consensus       158 ~dG~v~iw~~~~~~--~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~------we~~f~Lr~  228 (933)
T KOG1274|consen  158 CDGKVQIWDLQDGI--LSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKG------WELQFKLRD  228 (933)
T ss_pred             cCceEEEEEcccch--hhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCC------ceeheeecc
Confidence            99999999999876  222221        1245678899999 777778888999999999998      66666654 


Q ss_pred             -cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997          370 -GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       370 -~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s  448 (496)
                       .+...+..++|+|+|.| ||+++.||.|.|||..+...                   ......|.+++|.|+.+.+-+.
T Consensus       229 ~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~vWnv~t~~~-------------------~~~~~~Vc~~aw~p~~n~it~~  288 (933)
T KOG1274|consen  229 KLSSSKFSDLQWSPNGKY-IAASTLDGQILVWNVDTHER-------------------HEFKRAVCCEAWKPNANAITLI  288 (933)
T ss_pred             cccccceEEEEEcCCCcE-EeeeccCCcEEEEecccchh-------------------ccccceeEEEecCCCCCeeEEE
Confidence             34455999999999997 58999999999999987310                   1123478899999987754433

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=2.1e-19  Score=167.82  Aligned_cols=284  Identities=19%  Similarity=0.269  Sum_probs=201.8

Q ss_pred             cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCc-EEEEEeCCCcEEEEeCC
Q 010997           93 TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVE  171 (496)
Q Consensus        93 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-~lat~~~dg~i~iwd~~  171 (496)
                      ++|+.+.++.||.+..                      ...+......+.|.||+|+|.... +||++ ....+.|-+..
T Consensus       416 asGsdDGtvriWEi~T----------------------gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ivnp~  472 (733)
T KOG0650|consen  416 ASGSDDGTVRIWEIAT----------------------GRCVRTVQFDSEIRSVAWNPLSDLCVLAVA-VGECVLIVNPI  472 (733)
T ss_pred             eecCCCCcEEEEEeec----------------------ceEEEEEeecceeEEEEecCCCCceeEEEE-ecCceEEeCcc
Confidence            3567788888887642                      234556666779999999994333 44444 44456666654


Q ss_pred             CCCCccc-----cCC-----CC---------------CCCCceEEecCCCCcceeeeecCCCCceEEecC---CCcEEEE
Q 010997          172 AQPNRHA-----VLG-----AT---------------NSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLW  223 (496)
Q Consensus       172 ~~~~~~~-----~~~-----~~---------------~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg~i~iw  223 (496)
                      -+.....     .+.     ..               ...-+...-.|.. .|..+.|+..|.||++...   ...|.|.
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCceEEEeccCCCcceEEEE
Confidence            4311100     000     00               0111223334544 6899999999999998765   3578999


Q ss_pred             ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeE
Q 010997          224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL  303 (496)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  303 (496)
                      ++......                                        ..|.-..+.|.++.|+|..+.+|+ ++ -..|
T Consensus       552 QLSK~~sQ----------------------------------------~PF~kskG~vq~v~FHPs~p~lfV-aT-q~~v  589 (733)
T KOG0650|consen  552 QLSKRKSQ----------------------------------------SPFRKSKGLVQRVKFHPSKPYLFV-AT-QRSV  589 (733)
T ss_pred             eccccccc----------------------------------------CchhhcCCceeEEEecCCCceEEE-Ee-ccce
Confidence            88754321                                        223334567899999999855444 43 3679


Q ss_pred             EEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC
Q 010997          304 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD  383 (496)
Q Consensus       304 ~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~  383 (496)
                      +|||+....  ++..+......|..++.+| .|.-|+.|+.|+.+..||+.-.     .++..++..|...+++|+|++.
T Consensus       590 RiYdL~kqe--lvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldls-----skPyk~lr~H~~avr~Va~H~r  661 (733)
T KOG0650|consen  590 RIYDLSKQE--LVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLS-----SKPYKTLRLHEKAVRSVAFHKR  661 (733)
T ss_pred             EEEehhHHH--HHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccC-----cchhHHhhhhhhhhhhhhhccc
Confidence            999998755  5566666778899999999 8999999999999999999863     3788999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCC----cceEEecCCCCcEEEEecCCCCCCCCC
Q 010997          384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK----VVDFHWNASDPWTVVSVSDDCDSTGGG  459 (496)
Q Consensus       384 ~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----V~~~~~~p~~~~l~~s~s~d~~sgg~D  459 (496)
                      -+ |||+|+.||.+.||--.-......      +.....+..+.||...    |.++.|+|..+||+        |+|.|
T Consensus       662 yP-Lfas~sdDgtv~Vfhg~VY~Dl~q------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLf--------sAGAd  726 (733)
T KOG0650|consen  662 YP-LFASGSDDGTVIVFHGMVYNDLLQ------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLF--------SAGAD  726 (733)
T ss_pred             cc-eeeeecCCCcEEEEeeeeehhhhc------CCceEeeeeccCceeecccceEeecccCCCceEE--------ecCCC
Confidence            88 899999999999986543222111      1223456678888765    89999999999999        78888


Q ss_pred             CeEEEe
Q 010997          460 GTLQIW  465 (496)
Q Consensus       460 g~i~iw  465 (496)
                      |+|++|
T Consensus       727 ~tirlf  732 (733)
T KOG0650|consen  727 GTIRLF  732 (733)
T ss_pred             ceEEee
Confidence            999998

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=1.1e-19  Score=162.15  Aligned_cols=184  Identities=21%  Similarity=0.334  Sum_probs=140.3

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      ...+|..+.|.+...+.||||+.|..|+||-+.........   ........|..|+. +|+++.|+|+|..|+||+.+|
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~-aVN~vRf~p~gelLASg~D~g   87 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTR-AVNVVRFSPDGELLASGGDGG   87 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcc-eeEEEEEcCCcCeeeecCCCc
Confidence            34579999999966669999999999999999877433210   12234456778887 799999999999999999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .|.+|-...-...   ...                    . ....+.........+.+|...|.+++|+|++ +++++++
T Consensus        88 ~v~lWk~~~~~~~---~~d--------------------~-e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s  142 (434)
T KOG1009|consen   88 EVFLWKQGDVRIF---DAD--------------------T-EADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGS  142 (434)
T ss_pred             eEEEEEecCcCCc---ccc--------------------c-hhhhCccceEEEEEecccccchhhhhccCCC-ceeeeee
Confidence            9999987631000   000                    0 0000112233346778899999999999999 8999999


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  354 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~  354 (496)
                      .|..+++||++.+.  ....+..|...+..++|.| -.+++++-+.|...+.+.+.
T Consensus       143 ~dns~~l~Dv~~G~--l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  143 VDNSVRLWDVHAGQ--LLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             ccceEEEEEeccce--eEeeccccccccceeecch-hhhhhhhhccCcccceeeee
Confidence            99999999999998  6777889999999999999 78888888888755555543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=8.8e-19  Score=166.07  Aligned_cols=247  Identities=17%  Similarity=0.213  Sum_probs=189.5

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      +-.+.|-.++|++ ++ .|.+.+.+|.|.-||+.+.            ++...+....+ +|++++.+|.+..++.|+.|
T Consensus        67 ~~drsIE~L~W~e-~~-RLFS~g~sg~i~EwDl~~l------------k~~~~~d~~gg-~IWsiai~p~~~~l~Igcdd  131 (691)
T KOG2048|consen   67 PEDRSIESLAWAE-GG-RLFSSGLSGSITEWDLHTL------------KQKYNIDSNGG-AIWSIAINPENTILAIGCDD  131 (691)
T ss_pred             CCCCceeeEEEcc-CC-eEEeecCCceEEEEecccC------------ceeEEecCCCc-ceeEEEeCCccceEEeecCC
Confidence            3457899999996 44 5668888999999999998            55555555554 79999999999999999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      |.+..++...+...                                      ....|...++.|.++.|+|++ ..+++|
T Consensus       132 Gvl~~~s~~p~~I~--------------------------------------~~r~l~rq~sRvLslsw~~~~-~~i~~G  172 (691)
T KOG2048|consen  132 GVLYDFSIGPDKIT--------------------------------------YKRSLMRQKSRVLSLSWNPTG-TKIAGG  172 (691)
T ss_pred             ceEEEEecCCceEE--------------------------------------EEeecccccceEEEEEecCCc-cEEEec
Confidence            97777776644321                                      113455567899999999999 779999


Q ss_pred             cCCCeEEEEEccCCCccceeee------ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          298 GDDSCLILWDARVGTSPVIKVE------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      +.||.|++||..++....+.+.      +....-|.++.|-.  ...|++|...|+|.+||...      +..+..+..|
T Consensus       173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~------gTLiqS~~~h  244 (691)
T KOG2048|consen  173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIF------GTLIQSHSCH  244 (691)
T ss_pred             ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccC------cchhhhhhhh
Confidence            9999999999998873221111      11233466777764  67899999999999999998      8999999999


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      .+.|.+++..+++.+++ +++.|+.|.-|.....+.+           .........|...|.+++..++   .++    
T Consensus       245 ~adVl~Lav~~~~d~vf-saGvd~~ii~~~~~~~~~~-----------wv~~~~r~~h~hdvrs~av~~~---~l~----  305 (691)
T KOG2048|consen  245 DADVLALAVADNEDRVF-SAGVDPKIIQYSLTTNKSE-----------WVINSRRDLHAHDVRSMAVIEN---ALI----  305 (691)
T ss_pred             hcceeEEEEcCCCCeEE-EccCCCceEEEEecCCccc-----------eeeeccccCCcccceeeeeecc---eEE----
Confidence            99999999999988765 8888999999888774331           1223334678888999998875   344    


Q ss_pred             CCCCCCCCCeEEEeecC
Q 010997          452 DCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~  468 (496)
                         +||.|.++.+-...
T Consensus       306 ---sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  306 ---SGGRDFTLAICSSR  319 (691)
T ss_pred             ---ecceeeEEEEcccc
Confidence               66677888776655

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=4.9e-19  Score=161.62  Aligned_cols=294  Identities=23%  Similarity=0.355  Sum_probs=213.5

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE-ecCCCCcceeeeecCC--CCc
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TGHQDNAEFALAMCPT--EPY  210 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l-~~h~~~~v~~l~~~p~--~~~  210 (496)
                      .++-.|.|.|+.|.|.. .+..|++|+.|..|.+||....            .+...+ .||.. .|+.-.|-|.  ..-
T Consensus       136 ~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~------------~~~l~f~SGH~~-NvfQaKFiP~s~d~t  201 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSG------------SPKLSFESGHCN-NVFQAKFIPFSGDRT  201 (559)
T ss_pred             hcccCCCCccceeeecc-cCceeeccCccceEEeehhhcc------------Cccccccccccc-chhhhhccCCCCCcC
Confidence            35568999999999998 8999999999999999999887            333333 46776 4778888886  347


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      |++++.||.|++=.+.....                                     .+-...+..|.++|.-++.-|+.
T Consensus       202 i~~~s~dgqvr~s~i~~t~~-------------------------------------~e~t~rl~~h~g~vhklav~p~s  244 (559)
T KOG1334|consen  202 IVTSSRDGQVRVSEILETGY-------------------------------------VENTKRLAPHEGPVHKLAVEPDS  244 (559)
T ss_pred             ceeccccCceeeeeeccccc-------------------------------------eecceecccccCccceeeecCCC
Confidence            99999999999977643211                                     11124566799999999999999


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccce-eeeccCCC---CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVI-KVEKAHDA---DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  366 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~---~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  366 (496)
                      +..|.+++.|+.+.-+|++....... .....+..   ..+.|+.+|.+.+.+++|+.|-.+++||.+..........+.
T Consensus       245 p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~  324 (559)
T KOG1334|consen  245 PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLD  324 (559)
T ss_pred             CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhh
Confidence            99999999999999999998762211 22233444   678999999777899999999999999999876544344455


Q ss_pred             EeccC------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE-EecCCCC--CcceEE
Q 010997          367 KFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF-QHAGHRD--KVVDFH  437 (496)
Q Consensus       367 ~~~~h------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~--~V~~~~  437 (496)
                      ++..|      .-.|++++|+.++.-+||+-. |-.|++|.-.. +.-.......  .....+. ...||..  .|..+-
T Consensus       325 ~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn-De~IYLF~~~~-~~G~~p~~~s--~~~~~~k~vYKGHrN~~TVKgVN  400 (559)
T KOG1334|consen  325 KFCPHHLVEDDPVNITGLVYSHDGSELLASYN-DEDIYLFNKSM-GDGSEPDPSS--PREQYVKRVYKGHRNSRTVKGVN  400 (559)
T ss_pred             hcCCccccccCcccceeEEecCCccceeeeec-ccceEEecccc-ccCCCCCCCc--chhhccchhhcccccccccceee
Confidence            55433      346999999988877885554 77899984332 2111110000  0011222 2678875  356666


Q ss_pred             e-cCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          438 W-NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       438 ~-~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      | -|...+ ++|+|+       =|.|.||+-.      +++.+.-+++-..-|++|-.||
T Consensus       401 FfGPrsEy-VvSGSD-------CGhIFiW~K~------t~eii~~MegDr~VVNCLEpHP  446 (559)
T KOG1334|consen  401 FFGPRSEY-VVSGSD-------CGHIFIWDKK------TGEIIRFMEGDRHVVNCLEPHP  446 (559)
T ss_pred             eccCccce-EEecCc-------cceEEEEecc------hhHHHHHhhcccceEeccCCCC
Confidence            5 454444 554443       4999999999      8999999999988999998887

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=5.6e-19  Score=160.16  Aligned_cols=230  Identities=12%  Similarity=0.240  Sum_probs=181.6

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      .|+++.|+|..+.|++|+.||+++||.++....                                      ..++.+.-.
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N--------------------------------------~~lqS~~l~  256 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN--------------------------------------PKLQSIHLE  256 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccC--------------------------------------hhheeeeec
Confidence            589999999999999999999999999874322                                      223445555


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCC-CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                      ..+|.+.+|+|+|...+++++.-..++.||+.+.+...+....++. ..+..+..+| ++++||..+..|.|.|....+ 
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT-  334 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKT-  334 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhh-
Confidence            6799999999999658999999999999999988744444444444 4677888999 899999999999999999888 


Q ss_pred             CCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997          357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  436 (496)
Q Consensus       357 ~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  436 (496)
                           +..+.+++ -.+.|..++|+.++..|++ ++.+|.|.+||++... .            ...+.-.|.. .=+.+
T Consensus       335 -----~eli~s~K-ieG~v~~~~fsSdsk~l~~-~~~~GeV~v~nl~~~~-~------------~~rf~D~G~v-~gts~  393 (514)
T KOG2055|consen  335 -----KELITSFK-IEGVVSDFTFSSDSKELLA-SGGTGEVYVWNLRQNS-C------------LHRFVDDGSV-HGTSL  393 (514)
T ss_pred             -----hhhhheee-eccEEeeEEEecCCcEEEE-EcCCceEEEEecCCcc-e------------EEEEeecCcc-ceeee
Confidence                 77888887 5788999999999987764 4558999999999841 1            1122222211 12567


Q ss_pred             EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +.++++.+++        +|+..|.|.|||..........+++..+..-...|++++|+|
T Consensus       394 ~~S~ng~ylA--------~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~  445 (514)
T KOG2055|consen  394 CISLNGSYLA--------TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH  445 (514)
T ss_pred             eecCCCceEE--------eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence            7778887654        566669999999987777777789999999999999999987

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=1.9e-19  Score=156.47  Aligned_cols=268  Identities=15%  Similarity=0.251  Sum_probs=186.3

Q ss_pred             ecCCCceeEEEecC----CCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe--cCCCCcceeeeecCC---
Q 010997          137 IIHPGEVNRIRELP----QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPT---  207 (496)
Q Consensus       137 ~~h~~~V~~l~~~p----~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~--~h~~~~v~~l~~~p~---  207 (496)
                      ..|..+|..++|.+    +....+|+.+.+ .+.+|........         +.+....  .|.. .-+.++|+-+   
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~i---------r~lq~y~D~d~~E-sfytcsw~yd~~~  103 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGI---------RLLQSYADEDHDE-SFYTCSWSYDSNT  103 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccce---------eeeeeccCCCCCc-ceEEEEEEecCCC
Confidence            46888999999985    456688888765 7889987765211         1112221  2333 4677888754   


Q ss_pred             -CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997          208 -EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       208 -~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  286 (496)
                       +.+||.|+.-|.|+|.|+.+++.                                        ...+.+|...|+.+.+
T Consensus       104 ~~p~la~~G~~GvIrVid~~~~~~----------------------------------------~~~~~ghG~sINeik~  143 (385)
T KOG1034|consen  104 GNPFLAAGGYLGVIRVIDVVSGQC----------------------------------------SKNYRGHGGSINEIKF  143 (385)
T ss_pred             CCeeEEeecceeEEEEEecchhhh----------------------------------------ccceeccCccchhhhc
Confidence             34899999999999999986544                                        2667899999999999


Q ss_pred             ccCCCceEEEEcCCCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC------
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT------  357 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~------  357 (496)
                      +|..+++++++|.|.+|++|++++..  ++..+   .+|.+.|.++.|++ ++.+|++++.|.+|++|++....      
T Consensus       144 ~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE  220 (385)
T KOG1034|consen  144 HPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLE  220 (385)
T ss_pred             CCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhh
Confidence            99999999999999999999999988  44443   57999999999999 89999999999999999998321      


Q ss_pred             ------CCCCC-------CCce---EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe
Q 010997          358 ------SNGVG-------SPIN---KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  421 (496)
Q Consensus       358 ------~~~~~-------~~~~---~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  421 (496)
                            +++..       .++-   +-.-|...|-|+.|--  .+ +.+-|.++.|..|..-..++........ .....
T Consensus       221 ~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~-ilSkscenaI~~w~pgkl~e~~~~vkp~-es~~T  296 (385)
T KOG1034|consen  221 LSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DF-ILSKSCENAIVCWKPGKLEESIHNVKPP-ESATT  296 (385)
T ss_pred             hhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hh-eeecccCceEEEEecchhhhhhhccCCC-cccee
Confidence                  00000       1111   2245788888888864  44 4588889999999884433322111000 01112


Q ss_pred             eEEEecCCCCCcce--EEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          422 LFFQHAGHRDKVVD--FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       422 ~~~~~~~h~~~V~~--~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      .+..+.-....|.-  ++|.|-+..++        .|+..|.|.+||+++.
T Consensus       297 i~~~~~~~~c~iWfirf~~d~~~~~la--------~gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  297 ILGEFDYPMCDIWFIRFAFDPWQKMLA--------LGNQSGKVYVWDLDNN  339 (385)
T ss_pred             eeeEeccCccceEEEEEeecHHHHHHh--------hccCCCcEEEEECCCC
Confidence            22222222334444  45666566655        6777899999999854

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=2.9e-19  Score=168.73  Aligned_cols=256  Identities=16%  Similarity=0.300  Sum_probs=189.8

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  221 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~  221 (496)
                      .|+.++|-| +|..|+.+..+ .+.|||...+            ....++++|.+ .|++++|+.+|++++||+.|+.|.
T Consensus        14 ci~d~afkP-DGsqL~lAAg~-rlliyD~ndG------------~llqtLKgHKD-tVycVAys~dGkrFASG~aDK~VI   78 (1081)
T KOG1538|consen   14 CINDIAFKP-DGTQLILAAGS-RLLVYDTSDG------------TLLQPLKGHKD-TVYCVAYAKDGKRFASGSADKSVI   78 (1081)
T ss_pred             chheeEECC-CCceEEEecCC-EEEEEeCCCc------------ccccccccccc-eEEEEEEccCCceeccCCCceeEE
Confidence            799999999 55555444433 7999999988            66778999999 799999999999999999999999


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      +|+..-..                                          ..--.|.+.|.|+.|+|-. ..+++|+-. 
T Consensus        79 ~W~~klEG------------------------------------------~LkYSH~D~IQCMsFNP~~-h~LasCsLs-  114 (1081)
T KOG1538|consen   79 IWTSKLEG------------------------------------------ILKYSHNDAIQCMSFNPIT-HQLASCSLS-  114 (1081)
T ss_pred             Eecccccc------------------------------------------eeeeccCCeeeEeecCchH-HHhhhcchh-
Confidence            99864210                                          1123699999999999988 778888753 


Q ss_pred             eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc
Q 010997          302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS  381 (496)
Q Consensus       302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s  381 (496)
                      ..-+|......  .. . ......+.+.+|.. +|++|+.|-.+|+|.|-+-....    ...+..-.+..++|.+++|+
T Consensus       115 dFglWS~~qK~--V~-K-~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~gEe----k~~I~Rpgg~Nspiwsi~~~  185 (1081)
T KOG1538|consen  115 DFGLWSPEQKS--VS-K-HKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKNGEE----KVKIERPGGSNSPIWSICWN  185 (1081)
T ss_pred             hccccChhhhh--HH-h-hhhheeEEEeeecC-CCcEEEEeccCceEEeecCCCCc----ceEEeCCCCCCCCceEEEec
Confidence            46678765443  11 1 23456789999999 99999999999999987544211    11222234577899999999


Q ss_pred             CCCC----CEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997          382 PDKS----SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  457 (496)
Q Consensus       382 p~~~----~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg  457 (496)
                      |...    -+++......++.+|.++..                .+..-..-.-.-.++++.++|.+++        .||
T Consensus       186 p~sg~G~~di~aV~DW~qTLSFy~LsG~----------------~Igk~r~L~FdP~CisYf~NGEy~L--------iGG  241 (1081)
T KOG1538|consen  186 PSSGEGRNDILAVADWGQTLSFYQLSGK----------------QIGKDRALNFDPCCISYFTNGEYIL--------LGG  241 (1081)
T ss_pred             CCCCCCccceEEEEeccceeEEEEecce----------------eecccccCCCCchhheeccCCcEEE--------Ecc
Confidence            9642    26778888888888888652                1111111122346788999999999        677


Q ss_pred             CCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          458 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       458 ~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .|+.+++|.-.       |-.+.++-.....|++|+.+|
T Consensus       242 sdk~L~~fTR~-------GvrLGTvg~~D~WIWtV~~~P  273 (1081)
T KOG1538|consen  242 SDKQLSLFTRD-------GVRLGTVGEQDSWIWTVQAKP  273 (1081)
T ss_pred             CCCceEEEeec-------CeEEeeccccceeEEEEEEcc
Confidence            78999999765       556666666778899998877

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.82  E-value=1.8e-20  Score=180.96  Aligned_cols=261  Identities=23%  Similarity=0.345  Sum_probs=200.4

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      .++.+|-.+|.|+.|.. .+.++++|++|..|+||..++.            .++..++||.+ .|+.++.+.++.++++
T Consensus       184 krLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~------------~~lAs~rGhs~-ditdlavs~~n~~iaa  249 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETA------------RCLASCRGHSG-DITDLAVSSNNTMIAA  249 (1113)
T ss_pred             HHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccch------------hhhccCCCCcc-ccchhccchhhhhhhh
Confidence            35679999999999988 8999999999999999998887            77889999998 6899999998889999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      ++.|..|++|.+.++                                        .++..+.+|++.|++++|+|..   
T Consensus       250 aS~D~vIrvWrl~~~----------------------------------------~pvsvLrghtgavtaiafsP~~---  286 (1113)
T KOG0644|consen  250 ASNDKVIRVWRLPDG----------------------------------------APVSVLRGHTGAVTAIAFSPRA---  286 (1113)
T ss_pred             cccCceEEEEecCCC----------------------------------------chHHHHhccccceeeeccCccc---
Confidence            999999999998643                                        4457889999999999999854   


Q ss_pred             EEEEcCCCeEEEEEccCCCccceee---ec-cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKV---EK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~---~~-~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                        +.+.||++++||.+-.-  .+..   .. ....-+.++.|.. ++.-++||+.|+.-..|.+....            
T Consensus       287 --sss~dgt~~~wd~r~~~--~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~------------  349 (1113)
T KOG0644|consen  287 --SSSDDGTCRIWDARLEP--RIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLA------------  349 (1113)
T ss_pred             --cCCCCCceEeccccccc--cccCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHhh------------
Confidence              78899999999998211  1111   11 2235566777777 78899999999999888776522            


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      .+...+.-+.++.+-..+.+++-.+-.+++|++..+               .+...+.+|...+..+.++|-++.+..+ 
T Consensus       350 ~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------------~l~H~l~ghsd~~yvLd~Hpfn~ri~ms-  413 (1113)
T KOG0644|consen  350 WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------------QLLHNLMGHSDEVYVLDVHPFNPRIAMS-  413 (1113)
T ss_pred             hhccceEEEeccccccccceeeeeeeEeeeeecccc---------------hhhhhhcccccceeeeeecCCCcHhhhh-
Confidence            222223333333333335567777889999999885               4566678999999999999999988875 


Q ss_pred             cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                            +|.||...|||+.      .+.+++......+.+.+.+||+
T Consensus       414 ------ag~dgst~iwdi~------eg~pik~y~~gh~kl~d~kFSq  448 (1113)
T KOG0644|consen  414 ------AGYDGSTIIWDIW------EGIPIKHYFIGHGKLVDGKFSQ  448 (1113)
T ss_pred             ------ccCCCceEeeecc------cCCcceeeecccceeeccccCC
Confidence                  4555999999998      3444433333345567777775

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.5e-18  Score=142.67  Aligned_cols=254  Identities=17%  Similarity=0.217  Sum_probs=174.9

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  221 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~  221 (496)
                      .|.+-+++| .+++|++|+.+|.|.++.+.........  .....++...++|.+ +|+.++|.  ..+|++|+ ||.|+
T Consensus        12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~--~~gk~~iv~eqahdg-piy~~~f~--d~~Lls~g-dG~V~   84 (325)
T KOG0649|consen   12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAE--PPGKLKIVPEQAHDG-PIYYLAFH--DDFLLSGG-DGLVY   84 (325)
T ss_pred             HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccC--CCCCcceeeccccCC-Ceeeeeee--hhheeecc-CceEE
Confidence            366778899 8899999999999999998765433221  112245556688987 79999997  55788887 69999


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      -|..+.........+                         +|....  |.++-...--.|+++...|.. +-++.++.|+
T Consensus        85 gw~W~E~~es~~~K~-------------------------lwe~~~--P~~~~~~evPeINam~ldP~e-nSi~~AgGD~  136 (325)
T KOG0649|consen   85 GWEWNEEEESLATKR-------------------------LWEVKI--PMQVDAVEVPEINAMWLDPSE-NSILFAGGDG  136 (325)
T ss_pred             Eeeehhhhhhccchh-------------------------hhhhcC--ccccCcccCCccceeEeccCC-CcEEEecCCe
Confidence            998875432211111                         111110  011101122468899999887 4556666899


Q ss_pred             eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc---------C-
Q 010997          302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---------H-  371 (496)
Q Consensus       302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---------h-  371 (496)
                      .++-||+++++  ....+++|++.|.++.--. ....+++|+.||++|+||.++      .+.+..+..         | 
T Consensus       137 ~~y~~dlE~G~--i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt------~k~v~~ie~yk~~~~lRp~~  207 (325)
T KOG0649|consen  137 VIYQVDLEDGR--IQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKT------QKHVSMIEPYKNPNLLRPDW  207 (325)
T ss_pred             EEEEEEecCCE--EEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccc------cceeEEeccccChhhcCccc
Confidence            99999999999  7788999999999999854 566789999999999999999      666666542         2 


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      ...|.+++-+.  .++ ++|+ .-.+.+|.++..             ....++.+.+|   |..+.|..  ..++     
T Consensus       208 g~wigala~~e--dWl-vCGg-Gp~lslwhLrss-------------e~t~vfpipa~---v~~v~F~~--d~vl-----  260 (325)
T KOG0649|consen  208 GKWIGALAVNE--DWL-VCGG-GPKLSLWHLRSS-------------ESTCVFPIPAR---VHLVDFVD--DCVL-----  260 (325)
T ss_pred             CceeEEEeccC--ceE-EecC-CCceeEEeccCC-------------CceEEEecccc---eeEeeeec--ceEE-----
Confidence            23466666654  444 3444 668999999983             33566666654   56667764  3344     


Q ss_pred             CCCCCCCCCeEEEeecCC
Q 010997          452 DCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~~  469 (496)
                         ++|..+.|.-|.+..
T Consensus       261 ---~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  261 ---IGGEGNHVQSYTLNG  275 (325)
T ss_pred             ---Eeccccceeeeeecc
Confidence               444458899998874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.81  E-value=3.8e-18  Score=166.45  Aligned_cols=241  Identities=22%  Similarity=0.400  Sum_probs=176.0

Q ss_pred             CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCcccccc
Q 010997          163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKS  241 (496)
Q Consensus       163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~  241 (496)
                      +.+.||++....           .|...+....  .|+++.|+|.. .+|+.|..+|.|.+||++.+.....        
T Consensus       222 ~~~~vW~~~~p~-----------~Pe~~~~~~s--~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~--------  280 (555)
T KOG1587|consen  222 GVLLVWSLKNPN-----------TPELVLESPS--EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP--------  280 (555)
T ss_pred             ceEEEEecCCCC-----------CceEEEecCC--ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC--------
Confidence            479999998761           4555555544  58999999974 5788888999999999986543210        


Q ss_pred             CCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC-ceEEEEcCCCeEEEEEccCCCccceeee-
Q 010997          242 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-QEFCSVGDDSCLILWDARVGTSPVIKVE-  319 (496)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~-  319 (496)
                                                .........|..+|..+.|..+-. .-|++++.||.|..|+++.-..|..... 
T Consensus       281 --------------------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~  334 (555)
T KOG1587|consen  281 --------------------------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL  334 (555)
T ss_pred             --------------------------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc
Confidence                                      001123456899999999965431 4589999999999999887553321111 


Q ss_pred             ---------ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC--CCCCceEeccCCCCEEEEEEcCCCCCEE
Q 010997          320 ---------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG--VGSPINKFEGHSAAVLCVQWSPDKSSVF  388 (496)
Q Consensus       320 ---------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~--~~~~~~~~~~h~~~i~~l~~sp~~~~ll  388 (496)
                               ......+++++|.+.+.+.|+.|+.+|.|.--+........  ..+.+..+..|.++|+++.++|-+..+|
T Consensus       335 ~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f  414 (555)
T KOG1587|consen  335 ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF  414 (555)
T ss_pred             ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence                     12235789999999888999999999998874444332211  1133456677899999999999998888


Q ss_pred             EEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       389 as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .+++ |.+|+||.....              ..+++.+..+...|++++|||..+.+++++..|       |.|.|||+.
T Consensus       415 ls~g-DW~vriWs~~~~--------------~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~-------G~l~iWDLl  472 (555)
T KOG1587|consen  415 LSVG-DWTVRIWSEDVI--------------ASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGD-------GNLDIWDLL  472 (555)
T ss_pred             eeec-cceeEeccccCC--------------CCcchhhhhccceeeeeEEcCcCceEEEEEcCC-------Cceehhhhh
Confidence            7777 999999998732              134555666777899999999999999876665       999999998


Q ss_pred             CCCc
Q 010997          469 DLIY  472 (496)
Q Consensus       469 ~~~~  472 (496)
                      ....
T Consensus       473 ~~~~  476 (555)
T KOG1587|consen  473 QDDE  476 (555)
T ss_pred             cccc
Confidence            5433

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=4.4e-17  Score=160.76  Aligned_cols=269  Identities=24%  Similarity=0.466  Sum_probs=201.3

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeee-cCCCC-ceE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAM-CPTEP-YVL  212 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~-~p~~~-~l~  212 (496)
                      ....|...|.++.+.+ .+..++.++.|+.+.+|+.....           .....+.++....+..+.+ ++++. +++
T Consensus        60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (466)
T COG2319          60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGE-----------KLIKSLEGLHDSSVSKLALSSPDGNSILL  127 (466)
T ss_pred             eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCc-----------eeEEEEeccCCCceeeEEEECCCcceEEe
Confidence            4568999999999999 77888888899999999998872           1344455533223556666 77777 555


Q ss_pred             EecC-CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          213 SGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       213 sg~~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ..+. |+.+.+|+...                                       .......+..|...|.+++|+|++ 
T Consensus       128 ~~~~~d~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~-  167 (466)
T COG2319         128 ASSSLDGTVKLWDLST---------------------------------------PGKLIRTLEGHSESVTSLAFSPDG-  167 (466)
T ss_pred             ccCCCCccEEEEEecC---------------------------------------CCeEEEEEecCcccEEEEEECCCC-
Confidence            5444 99999999874                                       012236678899999999999999 


Q ss_pred             ceEEEEcC-CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCce-Ee
Q 010997          292 QEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN-KF  368 (496)
Q Consensus       292 ~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~  368 (496)
                      ..+++++. |+.+++|++....  ....+..|...|.+++|+| ++. ++++++.|+.|++||.+.      +..+. .+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~------~~~~~~~~  238 (466)
T COG2319         168 KLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLST------GKLLRSTL  238 (466)
T ss_pred             CEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCC------CcEEeeec
Confidence            57777775 9999999999855  5666677999999999998 776 666669999999998885      56666 68


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s  448 (496)
                      .+|...+ -..|+|++. ++++++.|+.+++|++.....              .+....+|...|.++.|+|++..+++ 
T Consensus       239 ~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~-  301 (466)
T COG2319         239 SGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSS--------------LLRTLSGHSSSVLSVAFSPDGKLLAS-  301 (466)
T ss_pred             CCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCc--------------EEEEEecCCccEEEEEECCCCCEEEE-
Confidence            8888875 448999995 566999999999999987421              12222688899999999997766663 


Q ss_pred             ecCCCCCCCCCCeEEEeecCCCCcCCchHHHHH--HHhccceEEEecc
Q 010997          449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE--LEKFKAHVISCTS  494 (496)
Q Consensus       449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~--l~~h~~~v~~~~~  494 (496)
                      ++       .|+.+++|+.....      ....  ...|...+..++|
T Consensus       302 ~~-------~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  336 (466)
T COG2319         302 GS-------SDGTVRLWDLETGK------LLSSLTLKGHEGPVSSLSF  336 (466)
T ss_pred             ee-------CCCcEEEEEcCCCc------eEEEeeecccCCceEEEEE
Confidence            43       44889999887432      1122  3466666766665

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=1.4e-18  Score=160.77  Aligned_cols=226  Identities=21%  Similarity=0.354  Sum_probs=168.3

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCce-EEecCCCCcceeeeecCC--CCce
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPT--EPYV  211 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~l~~h~~~~v~~l~~~p~--~~~l  211 (496)
                      .+.||+|.|+|+.|+. +|.+||+|++|-.+.|||....            ++++ .-.||.. -|+++.|-|.  +..+
T Consensus        45 eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~------------KllhsI~TgHta-NIFsvKFvP~tnnriv  110 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEY------------KLLHSISTGHTA-NIFSVKFVPYTNNRIV  110 (758)
T ss_pred             hhccccceecceeecC-CCCEEeecCCcceEEeecchhc------------ceeeeeeccccc-ceeEEeeeccCCCeEE
Confidence            4579999999999999 9999999999999999998865            4444 3468988 5899999996  4589


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      +||+.|..|+++|+.......                              .+-....+...+..|...|..++-.|.++
T Consensus       111 ~sgAgDk~i~lfdl~~~~~~~------------------------------~d~~~~~~~~~~~cht~rVKria~~p~~P  160 (758)
T KOG1310|consen  111 LSGAGDKLIKLFDLDSSKEGG------------------------------MDHGMEETTRCWSCHTDRVKRIATAPNGP  160 (758)
T ss_pred             EeccCcceEEEEecccccccc------------------------------cccCccchhhhhhhhhhhhhheecCCCCC
Confidence            999999999999997532211                              01122334466788999999999999999


Q ss_pred             ceEEEEcCCCeEEEEEccCCCc--cc------eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC---
Q 010997          292 QEFCSVGDDSCLILWDARVGTS--PV------IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---  360 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~--~~------~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~---  360 (496)
                      +.|.++++||+|+-||+|....  +.      .......--...|+..+|.+..+||+|+.|-..++||.|...+..   
T Consensus       161 htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~  240 (758)
T KOG1310|consen  161 HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSD  240 (758)
T ss_pred             ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCC
Confidence            9999999999999999998541  00      000111223567999999889999999999999999965432110   


Q ss_pred             ---------CCCCceEec-cCC-----------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          361 ---------VGSPINKFE-GHS-----------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       361 ---------~~~~~~~~~-~h~-----------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                               ...++..|. +|-           ..++-+.|+|+|..||++-+.+ .|+++|+...
T Consensus       241 ~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~  305 (758)
T KOG1310|consen  241 GTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNED  305 (758)
T ss_pred             ccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCC
Confidence                     011233331 221           1256789999999888777644 7999999874

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=3.3e-18  Score=149.69  Aligned_cols=197  Identities=21%  Similarity=0.327  Sum_probs=151.6

Q ss_pred             CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      ..+|++-..|+|++||..++.                                        .+..+.++...++.+.|..
T Consensus        41 ~~vav~lSngsv~lyd~~tg~----------------------------------------~l~~fk~~~~~~N~vrf~~   80 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ----------------------------------------LLEEFKGPPATTNGVRFIS   80 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh----------------------------------------hhheecCCCCcccceEEec
Confidence            468888889999999987643                                        2367788888899999976


Q ss_pred             C-CCceEEEEcCCCeEEEEEccCCCccceeeeccCC-CCeEEEEecCCCCcEEEEEcC----CCcEEEEeCCCCCCCCCC
Q 010997          289 S-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD-ADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVG  362 (496)
Q Consensus       289 ~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~~l~sgs~----dg~i~iwd~~~~~~~~~~  362 (496)
                      . ++..+.+|+.||+|++||+|............+. .+..|++.+- .++++++|+.    +-.|.+||+|+..     
T Consensus        81 ~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~q-----  154 (376)
T KOG1188|consen   81 CDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQ-----  154 (376)
T ss_pred             CCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEecccc-----
Confidence            4 6678999999999999999997754555555555 6788888876 6888888864    6789999999843     


Q ss_pred             CCceE-eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          363 SPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       363 ~~~~~-~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      +++.. +..|...|++|.|+|..+.+|+|||.||.|.|||+....++            ..+.....|...|..+.|...
T Consensus       155 q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee------------DaL~~viN~~sSI~~igw~~~  222 (376)
T KOG1188|consen  155 QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE------------DALLHVINHGSSIHLIGWLSK  222 (376)
T ss_pred             chhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch------------hhHHHhhcccceeeeeeeecC
Confidence            32444 46799999999999999999999999999999999875322            122233457778999999987


Q ss_pred             CCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          442 DPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      +-.-+...+.       ..+..+|++.+.
T Consensus       223 ~ykrI~clTH-------~Etf~~~ele~~  244 (376)
T KOG1188|consen  223 KYKRIMCLTH-------METFAIYELEDG  244 (376)
T ss_pred             CcceEEEEEc-------cCceeEEEccCC
Confidence            6222333333       388999999853

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=3.3e-18  Score=147.99  Aligned_cols=202  Identities=12%  Similarity=0.208  Sum_probs=151.1

Q ss_pred             eeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997          200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  279 (496)
Q Consensus       200 ~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  279 (496)
                      .|+.|++.|.+||+|..||.|.|||+.+..                                        +-+.+.+|..
T Consensus        27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~----------------------------------------iar~lsaH~~   66 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFR----------------------------------------IARMLSAHVR   66 (405)
T ss_pred             ceEEeccCcceeeeeccCCcEEEEEccccc----------------------------------------hhhhhhcccc
Confidence            699999999999999999999999997532                                        2367889999


Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  359 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~  359 (496)
                      +|++++|+++| ..|+|++.|..|.+||+..+.  +.+.+ ...++|....|+|.+.+.+++.-.+..-.+.++..+.  
T Consensus        67 pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs--~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--  140 (405)
T KOG1273|consen   67 PITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGS--PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--  140 (405)
T ss_pred             ceeEEEecCCC-CEeeeecCCceeEEEeccCCC--ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--
Confidence            99999999999 799999999999999999998  44444 5688999999999777776666666656666665411  


Q ss_pred             CCCCCceEec--cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC-CCcceE
Q 010997          360 GVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVDF  436 (496)
Q Consensus       360 ~~~~~~~~~~--~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~  436 (496)
                        ...+..-.  .-...-.+..|.+.|.+++ +|..-|.+.++|..+.               +++..+.--. ..|..+
T Consensus       141 --h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tGtsKGkllv~~a~t~---------------e~vas~rits~~~IK~I  202 (405)
T KOG1273|consen  141 --HSVLPKDDDGDLNSSASHGVFDRRGKYII-TGTSKGKLLVYDAETL---------------ECVASFRITSVQAIKQI  202 (405)
T ss_pred             --eeeccCCCccccccccccccccCCCCEEE-EecCcceEEEEecchh---------------eeeeeeeechheeeeEE
Confidence              01111000  0111223346889999765 9999999999999885               3333333323 578889


Q ss_pred             EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997          437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  473 (496)
Q Consensus       437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~  473 (496)
                      -++..+..+++        ...|..||.|++++....
T Consensus       203 ~~s~~g~~lii--------NtsDRvIR~ye~~di~~~  231 (405)
T KOG1273|consen  203 IVSRKGRFLII--------NTSDRVIRTYEISDIDDE  231 (405)
T ss_pred             EEeccCcEEEE--------ecCCceEEEEehhhhccc
Confidence            99998988884        444699999999866543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=2.9e-18  Score=159.47  Aligned_cols=223  Identities=19%  Similarity=0.236  Sum_probs=158.7

Q ss_pred             cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      ..+..+.+|.++|.|+++.+ ++..+.+|+.||+|+.|++...  ...............+.||++ .|+.+++++....
T Consensus       335 epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n--~dp~ds~dp~vl~~~l~Ghtd-avw~l~~s~~~~~  410 (577)
T KOG0642|consen  335 EPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPN--QDPDDSYDPSVLSGTLLGHTD-AVWLLALSSTKDR  410 (577)
T ss_pred             eeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCC--CCcccccCcchhccceecccc-ceeeeeecccccc
Confidence            34678889999999999988 9999999999999999988733  222222333355568999999 7999999999999


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      |++|+.||+|++|+...........+                                      ..| +--..+.+-...
T Consensus       411 Llscs~DgTvr~w~~~~~~~~~f~~~--------------------------------------~e~-g~Plsvd~~ss~  451 (577)
T KOG0642|consen  411 LLSCSSDGTVRLWEPTEESPCTFGEP--------------------------------------KEH-GYPLSVDRTSSR  451 (577)
T ss_pred             eeeecCCceEEeeccCCcCccccCCc--------------------------------------ccc-CCcceEeeccch
Confidence            99999999999999864322000000                                      001 112233332222


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeee-----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  365 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  365 (496)
                      ..+.++...-+.--++++.......+...     ......++.+.++| ...+.+++..|+.|+++|..+      +.++
T Consensus       452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~------~~~l  524 (577)
T KOG0642|consen  452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKT------GKIL  524 (577)
T ss_pred             hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccc------cccc
Confidence            12222222333333444443331111111     11235678899999 889999999999999999999      8999


Q ss_pred             eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      +....|...++++++.|+|.+ |++++.||.+++|.+..
T Consensus       525 ~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  525 HSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             hheeeccceecceeecCCCce-EEeecCCceeehhhccc
Confidence            999999999999999999997 56999999999999965

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.79  E-value=3.7e-18  Score=160.42  Aligned_cols=217  Identities=19%  Similarity=0.318  Sum_probs=166.3

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEe
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSG  214 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg  214 (496)
                      .+-....|+.+.|.|.+...||.+++||.|++|.+..+....     ....+...+.+|.. .|++|.|+|- ...|+++
T Consensus       623 ~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-----~~~tPe~~lt~h~e-KI~slRfHPLAadvLa~a  696 (1012)
T KOG1445|consen  623 GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-----NEMTPEKILTIHGE-KITSLRFHPLAADVLAVA  696 (1012)
T ss_pred             ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-----ccCCcceeeecccc-eEEEEEecchhhhHhhhh
Confidence            344567899999999999999999999999999998763222     23467788999998 6999999996 5689999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.|-+|++||+.+...                                        ...+.+|++.|.+++|+|+| ..+
T Consensus       697 syd~Ti~lWDl~~~~~----------------------------------------~~~l~gHtdqIf~~AWSpdG-r~~  735 (1012)
T KOG1445|consen  697 SYDSTIELWDLANAKL----------------------------------------YSRLVGHTDQIFGIAWSPDG-RRI  735 (1012)
T ss_pred             hccceeeeeehhhhhh----------------------------------------hheeccCcCceeEEEECCCC-cce
Confidence            9999999999986543                                        25688999999999999999 789


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC----CcEEEEeCCCCCCCCCCCCceEecc
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d----g~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      ++.+.||+|++|..+++..+...-...-...--.|.|.- ++.++++.+.|    ..|.+||..+..    +.++.+..-
T Consensus       736 AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~----~~pl~t~~l  810 (1012)
T KOG1445|consen  736 ATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLD----LRPLYTQVL  810 (1012)
T ss_pred             eeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhcc----CCcceeeee
Confidence            999999999999999887554322212223345667766 78888877766    468899988765    455544321


Q ss_pred             CCC-CEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          371 HSA-AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       371 h~~-~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ... .+.--.+.+|...+|++|-.|..|.+|.+-.
T Consensus       811 Dvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  811 DVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             cccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence            111 1222235567777899999999999999865

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.79  E-value=6.6e-18  Score=155.88  Aligned_cols=229  Identities=17%  Similarity=0.295  Sum_probs=156.1

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      .|...|.|+.|+. +..++.+++++-.+.-||+.+.......... ..-|.   .-|..+  .+..=-.....|+.++.|
T Consensus        12 r~~e~vc~v~w~~-~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~-df~pt---~~h~~~--rs~~~g~~~d~~~i~s~D   84 (737)
T KOG1524|consen   12 RNSEKVCCVDWSS-NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPD-DFVPT---DMHLGG--RSSGGGKGSDTLLICSND   84 (737)
T ss_pred             ccceeEEeecccc-cceEEEeccCceEEEeecccchhhhhhhCCc-ccCCc---cccccc--cccCCCCCcceEEEEcCC
Confidence            5666778999988 6666666665545555555544211110000 00000   011110  000001122368888899


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      |.+.+.+-....                                         ......|.+.+.+-.|+|+| .-|+++
T Consensus        85 Gkf~il~k~~rV-----------------------------------------E~sv~AH~~A~~~gRW~~dG-tgLlt~  122 (737)
T KOG1524|consen   85 GRFVILNKSARV-----------------------------------------ERSISAHAAAISSGRWSPDG-AGLLTA  122 (737)
T ss_pred             ceEEEecccchh-----------------------------------------hhhhhhhhhhhhhcccCCCC-ceeeee
Confidence            999998754211                                         14567899999999999999 679999


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  377 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~  377 (496)
                      ++||.|++|.- ++-  ...+......+|.|++|.|.+...+.+.+  +.+.|=-+..      ...+...+.|.+-|.+
T Consensus       123 GEDG~iKiWSr-sGM--LRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~------n~k~i~WkAHDGiiL~  191 (737)
T KOG1524|consen  123 GEDGVIKIWSR-SGM--LRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAA------NSKIIRWRAHDGLVLS  191 (737)
T ss_pred             cCCceEEEEec-cch--HHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccc------ccceeEEeccCcEEEE
Confidence            99999999974 333  33344456789999999995555555544  4455555555      4567788999999999


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  443 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~  443 (496)
                      +.|++... ++++|++|...+|||-..                ..+|....|.-+|++++|+|+..
T Consensus       192 ~~W~~~s~-lI~sgGED~kfKvWD~~G----------------~~Lf~S~~~ey~ITSva~npd~~  240 (737)
T KOG1524|consen  192 LSWSTQSN-IIASGGEDFRFKIWDAQG----------------ANLFTSAAEEYAITSVAFNPEKD  240 (737)
T ss_pred             eecCcccc-ceeecCCceeEEeecccC----------------cccccCChhccceeeeeeccccc
Confidence            99999988 678999999999999765                45677788889999999999743

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=3.2e-18  Score=153.01  Aligned_cols=260  Identities=20%  Similarity=0.313  Sum_probs=181.2

Q ss_pred             EecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcC
Q 010997          191 LTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG  269 (496)
Q Consensus       191 l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (496)
                      +.-|...+|+.+.|.++.. .|+||+.|..|++|-++.......                               ....+
T Consensus         8 i~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------------------------------~~~V~   56 (434)
T KOG1009|consen    8 ISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------------------------------DMKVE   56 (434)
T ss_pred             EEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------------------------------ceeEE
Confidence            3445555799999998865 999999999999999875432100                               02334


Q ss_pred             CeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEcc--------C------CCccceeeeccCCCCeEEEEecCCC
Q 010997          270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR--------V------GTSPVIKVEKAHDADLHCVDWNPLD  335 (496)
Q Consensus       270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~--------~------~~~~~~~~~~~~~~~v~~i~~sp~~  335 (496)
                      ....+..|...|+++.|+|+| .++++|+++|.|.+|-..        +      ..........+|...|..++|+| +
T Consensus        57 y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d  134 (434)
T KOG1009|consen   57 YLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-D  134 (434)
T ss_pred             EeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-C
Confidence            456788999999999999999 799999999999999766        2      11223455678999999999999 9


Q ss_pred             CcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC----
Q 010997          336 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ----  411 (496)
Q Consensus       336 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~----  411 (496)
                      ++++++|+.|..+++||++.      +..+..+..|...|..++|.|.++++ ++-+.|...+++.+.........    
T Consensus       135 ~~~l~s~s~dns~~l~Dv~~------G~l~~~~~dh~~yvqgvawDpl~qyv-~s~s~dr~~~~~~~~~~~~~~~~~~~~  207 (434)
T KOG1009|consen  135 SNFLVSGSVDNSVRLWDVHA------GQLLAILDDHEHYVQGVAWDPLNQYV-ASKSSDRHPEGFSAKLKQVIKRHGLDI  207 (434)
T ss_pred             CceeeeeeccceEEEEEecc------ceeEeeccccccccceeecchhhhhh-hhhccCcccceeeeeeeeeeeeeeeeE
Confidence            99999999999999999999      89999999999999999999999974 68888887777776543211110    


Q ss_pred             ----CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCC--CCeEEEeecCCCCcCCchHHHHHHHhc
Q 010997          412 ----GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG--GGTLQIWRMSDLIYRPQDEVLAELEKF  485 (496)
Q Consensus       412 ----~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~--Dg~i~iw~~~~~~~~~~~~~~~~l~~h  485 (496)
                          ...+.......++.-..-..-...++|+|+|..++. -+.-..+|+.  =++.++|+-.+     -..+...+...
T Consensus       208 m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt-Pag~~~~g~~~~~n~tYvfsrk~-----l~rP~~~lp~~  281 (434)
T KOG1009|consen  208 MPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT-PAGLFKVGGGVFRNTSYVFSRKD-----LKRPAARLPSP  281 (434)
T ss_pred             eeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc-ccceeeeCCceeeceeEeecccc-----ccCceeecCCC
Confidence                001111111222221111224567899998876553 2210002221  13344554442     24566777788


Q ss_pred             cceEEEeccCC
Q 010997          486 KAHVISCTSKP  496 (496)
Q Consensus       486 ~~~v~~~~~sP  496 (496)
                      ..++..+.|+|
T Consensus       282 ~k~~lavr~~p  292 (434)
T KOG1009|consen  282 KKPALAVRFSP  292 (434)
T ss_pred             CcceEEEEeee
Confidence            88888888887

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=1.2e-15  Score=145.50  Aligned_cols=266  Identities=9%  Similarity=0.144  Sum_probs=166.9

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEE-eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATH-TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      +.++.+.+.+....++++| ++++|+++ ..++.|.+|++......         ....... ... ....++++|++++
T Consensus        26 ~~~~~~~~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l---------~~~~~~~-~~~-~p~~i~~~~~g~~   93 (330)
T PRK11028         26 TLLQVVDVPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGAL---------TFAAESP-LPG-SPTHISTDHQGRF   93 (330)
T ss_pred             eeeeEEecCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCce---------EEeeeec-CCC-CceEEEECCCCCE
Confidence            3445566667788999999 77776554 45889999999732100         0111111 112 2468999999998


Q ss_pred             eEEec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          211 VLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       211 l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      |++++ .++.|.+|++++.....                                    ..+..+. +...+..++++|+
T Consensus        94 l~v~~~~~~~v~v~~~~~~g~~~------------------------------------~~~~~~~-~~~~~~~~~~~p~  136 (330)
T PRK11028         94 LFSASYNANCVSVSPLDKDGIPV------------------------------------APIQIIE-GLEGCHSANIDPD  136 (330)
T ss_pred             EEEEEcCCCeEEEEEECCCCCCC------------------------------------Cceeecc-CCCcccEeEeCCC
Confidence            88776 48999999986321100                                    0011111 2234567889999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccc----eeeeccCCCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCC
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPV----IKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSP  364 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~  364 (496)
                      +..++++...++.|.+||+.+.....    .............++|+| ++.+++++.. ++.|.+||+.....  ....
T Consensus       137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~--~~~~  213 (330)
T PRK11028        137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHG--EIEC  213 (330)
T ss_pred             CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCC--CEEE
Confidence            95556777788999999997633110    000111234567899999 8888877765 89999999974210  0122


Q ss_pred             ceEeccC------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997          365 INKFEGH------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  438 (496)
Q Consensus       365 ~~~~~~h------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  438 (496)
                      +..+..+      ......+.|+|++++++++...++.|.+|++...+...           .++..... ......+++
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-----------~~~~~~~~-~~~p~~~~~  281 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-----------SFEGHQPT-ETQPRGFNI  281 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-----------EEeEEEec-cccCCceEE
Confidence            3333221      12234689999999877665568899999997532111           11111111 124568999


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +|++++++++...       +++|.+|++.
T Consensus       282 ~~dg~~l~va~~~-------~~~v~v~~~~  304 (330)
T PRK11028        282 DHSGKYLIAAGQK-------SHHISVYEID  304 (330)
T ss_pred             CCCCCEEEEEEcc-------CCcEEEEEEc
Confidence            9999999886544       4999999986

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=1e-16  Score=159.10  Aligned_cols=285  Identities=18%  Similarity=0.225  Sum_probs=181.1

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecC--CCCcceeeeecCC--CCceEEec
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--QDNAEFALAMCPT--EPYVLSGG  215 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h--~~~~v~~l~~~p~--~~~l~sg~  215 (496)
                      .+.-..+.|+|..+ .++++...-.|+|||.+.+....            .+..+  ....|+.+.+-..  ..+|++|+
T Consensus      1064 ~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~------------~F~n~~~~~t~Vs~l~liNe~D~aLlLtas 1130 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLN------------GFDNGAFPDTRVSDLELINEQDDALLLTAS 1130 (1387)
T ss_pred             CCCCceeeecCCCc-eeEEcCCcceEEEEecccCceec------------cccCCCCCCCccceeeeecccchhheeeec
Confidence            34566788888554 56666656699999999884322            11111  1124777777543  44899999


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      .||.|+||+--....    .....+                    ..|....    ....+-.+.=.-+.|.... ..|+
T Consensus      1131 ~dGvIRIwk~y~~~~----~~~eLV--------------------Taw~~Ls----~~~~~~r~~~~v~dWqQ~~-G~Ll 1181 (1387)
T KOG1517|consen 1131 SDGVIRIWKDYADKW----KKPELV--------------------TAWSSLS----DQLPGARGTGLVVDWQQQS-GHLL 1181 (1387)
T ss_pred             cCceEEEeccccccc----CCceeE--------------------Eeecccc----ccCccCCCCCeeeehhhhC-CeEE
Confidence            999999997432110    000000                    0000000    0000111111345777766 4566


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC-
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA-  374 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-  374 (496)
                      ++|+-..|+|||...... +.-...+....|+++.-+-..++++++|..||.|++||.|....   ...+...+.|+.. 
T Consensus      1182 ~tGd~r~IRIWDa~~E~~-~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1182 VTGDVRSIRIWDAHKEQV-VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYREHNDVE 1257 (1387)
T ss_pred             ecCCeeEEEEEeccccee-EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc---cccceeecccCCcc
Confidence            666689999999987662 22222345677888877665789999999999999999998542   2467778888887 


Q ss_pred             -EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997          375 -VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  453 (496)
Q Consensus       375 -i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~  453 (496)
                       |..+.+-+.|-.-|++|+.||.|++||++....+.         . ..+..+....+.++++..+++.+. +|      
T Consensus      1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~---------~-~~iv~~~~yGs~lTal~VH~hapi-iA------ 1320 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET---------F-LTIVAHWEYGSALTALTVHEHAPI-IA------ 1320 (1387)
T ss_pred             cceeEEeecCCCcceeeeccCCeEEEEecccCcccc---------c-ceeeeccccCccceeeeeccCCCe-ee------
Confidence             99999998775436799999999999999831110         0 111112222235899999997764 44      


Q ss_pred             CCCCCCCeEEEeecCCCCcCCchHHHHHHHh-------ccceEEEeccCC
Q 010997          454 DSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-------FKAHVISCTSKP  496 (496)
Q Consensus       454 ~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~-------h~~~v~~~~~sP  496 (496)
                       ||+. +.|+||++.       |+.+..+..       ..+++.+++|||
T Consensus      1321 -sGs~-q~ikIy~~~-------G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1321 -SGSA-QLIKIYSLS-------GEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred             -ecCc-ceEEEEecC-------hhhhcccccCcccccCcCCCcceeeecc
Confidence             5555 899999998       333333332       245689999998

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=9.9e-18  Score=155.18  Aligned_cols=234  Identities=17%  Similarity=0.278  Sum_probs=167.3

Q ss_pred             ceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997          188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  267 (496)
Q Consensus       188 ~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (496)
                      ...|.||++ .|+||+|+.+|.+|+||+.|-.+.|||.-..+..                                    
T Consensus        43 E~eL~GH~G-CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll------------------------------------   85 (758)
T KOG1310|consen   43 EAELTGHTG-CVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL------------------------------------   85 (758)
T ss_pred             hhhhccccc-eecceeecCCCCEEeecCCcceEEeecchhccee------------------------------------
Confidence            346899998 8999999999999999999999999998632211                                    


Q ss_pred             cCCeeeeecCCCceeEEEEccCC-CceEEEEcCCCeEEEEEccCCC--------ccceeeeccCCCCeEEEEecCCCCcE
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGT--------SPVIKVEKAHDADLHCVDWNPLDDNL  338 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~v~~i~~sp~~~~~  338 (496)
                         ..+-.+|...|.++.|-|.. ..++++|..|..|+++|+...+        .........|...|..|+-.|...+.
T Consensus        86 ---hsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Pht  162 (758)
T KOG1310|consen   86 ---HSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHT  162 (758)
T ss_pred             ---eeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCce
Confidence               12346899999999999854 3578999999999999998522        11234456789999999999955699


Q ss_pred             EEEEcCCCcEEEEeCCCCCCCCC----CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCC
Q 010997          339 ILTGSADNSVRMFDRRNLTSNGV----GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  414 (496)
Q Consensus       339 l~sgs~dg~i~iwd~~~~~~~~~----~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~  414 (496)
                      |.+++.||+|+-+|+|.+..-..    ...+..+...--...++..+|..++.||.|+.|-..++||.+...+.......
T Consensus       163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~  242 (758)
T KOG1310|consen  163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT  242 (758)
T ss_pred             EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence            99999999999999998542111    11111122222356799999999999999999999999996653332222111


Q ss_pred             CCCCCC----eeEEEecCCC-----------CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          415 TTNYPA----GLFFQHAGHR-----------DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       415 ~~~~~~----~~~~~~~~h~-----------~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      -...|+    ..-+-..+|.           ..++-+.|+|+|.-++++-+.+        .|+++++.+
T Consensus       243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE--------hVYlfdvn~  304 (758)
T KOG1310|consen  243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE--------HVYLFDVNE  304 (758)
T ss_pred             ccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe--------EEEEEeecC
Confidence            111111    0111122232           1256688999999999987765        799999974

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.1e-17  Score=145.17  Aligned_cols=176  Identities=18%  Similarity=0.261  Sum_probs=138.5

Q ss_pred             eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997          189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  268 (496)
Q Consensus       189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (496)
                      ..+.+|.+ .|.+|.|+.++++|++|+.|..+++|+++.....                                  ...
T Consensus        50 KD~~~H~G-CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~----------------------------------k~~   94 (609)
T KOG4227|consen   50 KDVREHTG-CINALQFSHNDRFLASGGDDMHGRVWNVDELMVR----------------------------------KTP   94 (609)
T ss_pred             hhhhhhcc-ccceeeeccCCeEEeecCCcceeeeechHHHHhh----------------------------------cCC
Confidence            45778998 7999999999999999999999999999754322                                  122


Q ss_pred             CCeeeee-cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCC---CCeEEEEecCCCCcEEEEEcC
Q 010997          269 GPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       269 ~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~i~~sp~~~~~l~sgs~  344 (496)
                      +|+.... .|...|.|++|...+ .++++|+.+++|.+.|+.+.+  .+..+ .|.   +.|+.+..+| ..+.|++.+.
T Consensus        95 KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt~q--si~V~-~~~~~~~~VY~m~~~P-~DN~~~~~t~  169 (609)
T KOG4227|consen   95 KPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIETKQ--SIYVA-NENNNRGDVYHMDQHP-TDNTLIVVTR  169 (609)
T ss_pred             CCceeccCccccceEEEEEccCC-eeEecCCCcceeEeeecccce--eeeee-cccCcccceeecccCC-CCceEEEEec
Confidence            3344433 456899999998877 789999999999999999987  34443 444   5999999999 6899999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  407 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~  407 (496)
                      +|.|.+||.+.....  +.+ ...........++.|+|..+.||++++.-+-+.+||.+....
T Consensus       170 ~~~V~~~D~Rd~~~~--~~~-~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~  229 (609)
T KOG4227|consen  170 AKLVSFIDNRDRQNP--ISL-VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR  229 (609)
T ss_pred             CceEEEEeccCCCCC--Cce-eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc
Confidence            999999999973210  111 122234556789999999999999999999999999987543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.76  E-value=1.2e-15  Score=150.56  Aligned_cols=250  Identities=27%  Similarity=0.527  Sum_probs=186.5

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-  209 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-  209 (496)
                      .......|...|..++|+| ++.++++++. |+.+++|++...            .....+.+|.. .|.+++|+|++. 
T Consensus       147 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~  212 (466)
T COG2319         147 LIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTG------------KPLSTLAGHTD-PVSSLAFSPDGGL  212 (466)
T ss_pred             EEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCC------------ceEEeeccCCC-ceEEEEEcCCcce
Confidence            4456778999999999999 6668888875 999999999875            55667777887 689999999998 


Q ss_pred             ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCee-eeecCCCceeEEEEcc
Q 010997          210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG-IYNGHEDTVEDVTFCP  288 (496)
Q Consensus       210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~  288 (496)
                      .+++++.|+.|++||...+..                                        .. .+.+|...+ ...|+|
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~~----------------------------------------~~~~~~~~~~~~-~~~~~~  251 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGKL----------------------------------------LRSTLSGHSDSV-VSSFSP  251 (466)
T ss_pred             EEEEecCCCcEEEEECCCCcE----------------------------------------EeeecCCCCcce-eEeECC
Confidence            566669999999997663221                                        12 456676664 338999


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      ++ .++++++.|+.+++||++.... .......|...+.++.|+| ++..+++++.|+.+.+||+..      .......
T Consensus       252 ~~-~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~------~~~~~~~  322 (466)
T COG2319         252 DG-SLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLET------GKLLSSL  322 (466)
T ss_pred             CC-CEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCC------CceEEEe
Confidence            98 7888999999999999997764 1233357899999999999 788888899999999999887      4444444


Q ss_pred             c--cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997          369 E--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       369 ~--~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~  446 (496)
                      .  .|...+..+.|.+++..++.++..|+.+.+|++....               ......... .+..+.+.+ . ..+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~-~-~~~  384 (466)
T COG2319         323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---------------PLKTLEGHS-NVLSVSFSP-D-GRV  384 (466)
T ss_pred             eecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---------------eeEEecCCc-eEEEEEECC-C-CCE
Confidence            4  7888899999943324454444678999999998841               111222222 288999999 6 545


Q ss_pred             EEecCCCCCCCCCCeEEEeecCC
Q 010997          447 VSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .+      .++.++.+.+|+...
T Consensus       385 ~~------~~~~~~~~~~~~~~~  401 (466)
T COG2319         385 VS------SGSTDGTVRLWDLST  401 (466)
T ss_pred             EE------EecCCCceEEEeccc
Confidence            43      134459999999984

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=3.3e-17  Score=161.00  Aligned_cols=237  Identities=14%  Similarity=0.139  Sum_probs=154.1

Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC---CcEEEEecCCccccccCCccc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPAT  238 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D---g~i~iwd~~~~~~~~~~~~~~  238 (496)
                      +..|.+||....            . ...+..|.. .+...+|+|+|++|+.++.+   ..|.+||+.++....      
T Consensus       183 ~~~i~i~d~dg~------------~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------  242 (429)
T PRK01742        183 PYEVRVADYDGF------------N-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------  242 (429)
T ss_pred             eEEEEEECCCCC------------C-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE------
Confidence            468999998765            2 234556655 58899999999999887643   469999987543210      


Q ss_pred             cccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEE--EccCCCccce
Q 010997          239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW--DARVGTSPVI  316 (496)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~  316 (496)
                                                      +..+.+   ....++|+|++..++++.+.+|.+.||  |+.++.   .
T Consensus       243 --------------------------------l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~  284 (429)
T PRK01742        243 --------------------------------VASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---P  284 (429)
T ss_pred             --------------------------------EecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---e
Confidence                                            111222   234679999994444445578876666  554444   3


Q ss_pred             eeeccCCCCeEEEEecCCCCcEEEE-EcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997          317 KVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  395 (496)
Q Consensus       317 ~~~~~~~~~v~~i~~sp~~~~~l~s-gs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg  395 (496)
                      ..+..+...+...+|+| ++..|+. +..+|...||++....     .....+ .+..  ....|+|+|..|+ .++.++
T Consensus       285 ~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~-----~~~~~l-~~~~--~~~~~SpDG~~ia-~~~~~~  354 (429)
T PRK01742        285 SQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASG-----GGASLV-GGRG--YSAQISADGKTLV-MINGDN  354 (429)
T ss_pred             EeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCC-----CCeEEe-cCCC--CCccCCCCCCEEE-EEcCCC
Confidence            34445667788999999 7876665 4467889999876522     222223 3333  4678999999754 555454


Q ss_pred             cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCc
Q 010997          396 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ  475 (496)
Q Consensus       396 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~  475 (496)
                       +.+||+.....             ..+.  ..+  ....++|+|++..++.+..        ++.+.+|.+...    .
T Consensus       355 -i~~~Dl~~g~~-------------~~lt--~~~--~~~~~~~sPdG~~i~~~s~--------~g~~~~l~~~~~----~  404 (429)
T PRK01742        355 -VVKQDLTSGST-------------EVLS--STF--LDESPSISPNGIMIIYSST--------QGLGKVLQLVSA----D  404 (429)
T ss_pred             -EEEEECCCCCe-------------EEec--CCC--CCCCceECCCCCEEEEEEc--------CCCceEEEEEEC----C
Confidence             66699877411             1111  111  2356789999887664432        366777776421    4


Q ss_pred             hHHHHHHHhccceEEEeccCC
Q 010997          476 DEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       476 ~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +..++++.+|.+.+...+|||
T Consensus       405 G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        405 GRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             CCceEEccCCCCCCCCcccCC
Confidence            677888888999899999998

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.75  E-value=3.3e-17  Score=155.03  Aligned_cols=241  Identities=13%  Similarity=0.194  Sum_probs=180.6

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe-cCCCCcceeeeecCCCCceEE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      .+.+|.+.|+|++|+. +|+.+|+|+.|..|.||+-.-.               ..++ .|.+ .|.|+.|+|-...|+|
T Consensus        48 tLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klE---------------G~LkYSH~D-~IQCMsFNP~~h~Las  110 (1081)
T KOG1538|consen   48 PLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLE---------------GILKYSHND-AIQCMSFNPITHQLAS  110 (1081)
T ss_pred             ccccccceEEEEEEcc-CCceeccCCCceeEEEeccccc---------------ceeeeccCC-eeeEeecCchHHHhhh
Confidence            4568999999999999 9999999999999999986433               2333 4666 7999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+-. ..-+|..+.....                                         . ......|.+.+|..+| .+
T Consensus       111 CsLs-dFglWS~~qK~V~-----------------------------------------K-~kss~R~~~CsWtnDG-qy  146 (1081)
T KOG1538|consen  111 CSLS-DFGLWSPEQKSVS-----------------------------------------K-HKSSSRIICCSWTNDG-QY  146 (1081)
T ss_pred             cchh-hccccChhhhhHH-----------------------------------------h-hhhheeEEEeeecCCC-cE
Confidence            9853 5678877642211                                         0 0123578899999999 89


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCC----cEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD----NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~----~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      |+.|-.+|+|.|-+-.......+....+.+++|.+|+|+|..+    ..+++.....++.++.+.       ++.+..-+
T Consensus       147 lalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-------G~~Igk~r  219 (1081)
T KOG1538|consen  147 LALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-------GKQIGKDR  219 (1081)
T ss_pred             EEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-------ceeecccc
Confidence            9999999999998654444333333345788999999999432    467777777777777766       34444333


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      .-.-...|+++.|+|.++| .|+.|+.+++|.-..                ..+.+.......|+.++..|++.++.   
T Consensus       220 ~L~FdP~CisYf~NGEy~L-iGGsdk~L~~fTR~G----------------vrLGTvg~~D~WIWtV~~~PNsQ~v~---  279 (1081)
T KOG1538|consen  220 ALNFDPCCISYFTNGEYIL-LGGSDKQLSLFTRDG----------------VRLGTVGEQDSWIWTVQAKPNSQYVV---  279 (1081)
T ss_pred             cCCCCchhheeccCCcEEE-EccCCCceEEEeecC----------------eEEeeccccceeEEEEEEccCCceEE---
Confidence            3344567999999999876 777899999997554                34555556677999999999998877   


Q ss_pred             cCCCCCCCCCCeEEEeecC
Q 010997          450 SDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~  468 (496)
                           .|..||+|-.|++.
T Consensus       280 -----~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  280 -----VGCQDGTIACYNLI  293 (1081)
T ss_pred             -----EEEccCeeehhhhH
Confidence                 45567999999985

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=9.1e-17  Score=159.45  Aligned_cols=258  Identities=12%  Similarity=0.206  Sum_probs=172.6

Q ss_pred             CCceeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCC-CccccCCCCCCCCceE---EecC----CCCcceeeeecCCCCc
Q 010997          140 PGEVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQP-NRHAVLGATNSRPDLI---LTGH----QDNAEFALAMCPTEPY  210 (496)
Q Consensus       140 ~~~V~~l~~~p-~~~~~lat~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~---l~~h----~~~~v~~l~~~p~~~~  210 (496)
                      ...|+.+.+.. ++..++.+|+.||.|+||+--... .+.        +.+..   +.++    .+ .-.-++|.....+
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~--------eLVTaw~~Ls~~~~~~r~-~~~v~dWqQ~~G~ 1179 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP--------ELVTAWSSLSDQLPGARG-TGLVVDWQQQSGH 1179 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCc--------eeEEeeccccccCccCCC-CCeeeehhhhCCe
Confidence            34688888765 466789999999999999754332 111        11111   1111    11 1235678877677


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      |+++|.-..|+|||...........                                       .+....|+++.-+..+
T Consensus      1180 Ll~tGd~r~IRIWDa~~E~~~~diP---------------------------------------~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1180 LLVTGDVRSIRIWDAHKEQVVADIP---------------------------------------YGSSTLVTALSADLVH 1220 (1387)
T ss_pred             EEecCCeeEEEEEecccceeEeecc---------------------------------------cCCCccceeecccccC
Confidence            7777778999999998654322111                                       1233456666665555


Q ss_pred             CceEEEEcCCCeEEEEEccCCCc-cceeeeccCCCC--eEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997          291 AQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDAD--LHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN  366 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~--v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  366 (496)
                      ++++++|..||.|++||.|.... ..+...+.|...  |..+.+.+ .|. .|++|+.||.|++||+|...    .....
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~-~G~~elvSgs~~G~I~~~DlR~~~----~e~~~ 1295 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR-QGLGELVSGSQDGDIQLLDLRMSS----KETFL 1295 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec-CCCcceeeeccCCeEEEEecccCc----ccccc
Confidence            58999999999999999997652 134556788877  99999998 444 59999999999999999842    12233


Q ss_pred             EeccCC--C-CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997          367 KFEGHS--A-AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  443 (496)
Q Consensus       367 ~~~~h~--~-~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~  443 (496)
                      ++..|-  + ..+++..+++.+ ++|+|+. +.|+||++...  .+.....    -+..+   ....+.+.+++|+|...
T Consensus      1296 ~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~--~l~~~k~----n~~F~---~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGE--QLNIIKY----NPGFM---GQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred             eeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChh--hhccccc----Ccccc---cCcCCCcceeeecchhH
Confidence            333333  3 599999999988 7889987 99999999752  1111000    00111   11234679999999654


Q ss_pred             cEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          444 WTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       444 ~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                       ++|       .|..|++|.||...+
T Consensus      1365 -llA-------aG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1365 -LLA-------AGSADSTVSIYSCEK 1382 (1387)
T ss_pred             -hhh-------hccCCceEEEeecCC
Confidence             444       455579999998874

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=3.2e-16  Score=136.27  Aligned_cols=215  Identities=14%  Similarity=0.222  Sum_probs=173.4

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  219 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~  219 (496)
                      ..+|+|.+|++ +...+|.+.....|.||......         ..++..++..|.. .|++++|+|..+.|++|+.|..
T Consensus        10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~---------~w~~~htls~Hd~-~vtgvdWap~snrIvtcs~drn   78 (361)
T KOG1523|consen   10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGAD---------LWEPAHTLSEHDK-IVTGVDWAPKSNRIVTCSHDRN   78 (361)
T ss_pred             cCceeeeeecC-CCceEEeccCCceEEEEEecCCC---------CceeceehhhhCc-ceeEEeecCCCCceeEccCCCC
Confidence            46799999999 88899999999999999987761         2567789999988 7999999999999999999999


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      -.+|....+                                     ...++...+..+...++++.|+|.. +.|++|+.
T Consensus        79 ayVw~~~~~-------------------------------------~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSg  120 (361)
T KOG1523|consen   79 AYVWTQPSG-------------------------------------GTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSG  120 (361)
T ss_pred             ccccccCCC-------------------------------------CeeccceeEEEeccceeeEeecCcC-ceEEeccC
Confidence            999987421                                     3445567788899999999999998 89999999


Q ss_pred             CCeEEEEEccCCCc--cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC-----CC-CC------CCCCCCc
Q 010997          300 DSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR-----NL-TS------NGVGSPI  365 (496)
Q Consensus       300 dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~-----~~-~~------~~~~~~~  365 (496)
                      ...|.||-++....  ....+.+.+.+.|++++|+| ++-+|++|+.|+..++|..-     .. ..      .+-+..+
T Consensus       121 ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm  199 (361)
T KOG1523|consen  121 ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM  199 (361)
T ss_pred             ccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence            99999998876541  11233457788999999999 89999999999999998632     11 00      0113344


Q ss_pred             eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      .++....+.|..+.|+|+|.. ||=.+.|..+.+-|....
T Consensus       200 ~E~~~~ggwvh~v~fs~sG~~-lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  200 SEASSSGGWVHGVLFSPSGNR-LAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             HhhccCCCceeeeEeCCCCCE-eeEecCCCceEEeecCCC
Confidence            555556788999999999995 678888999999998764

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.74  E-value=3.5e-16  Score=157.74  Aligned_cols=281  Identities=15%  Similarity=0.195  Sum_probs=179.4

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      -++..|.+.|+.++.++.++.+++||+.||+|++||........     ...+...++.- .+..+.++...+.+..+|.
T Consensus      1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----GSARSELTYSP-EGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-----ceeeeeEEEec-cCCceEEEEeccCCCeEEE
Confidence            34557999999999999787999999999999999998753221     11122333332 3346889999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-CCceeE-EEEccCCC
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVED-VTFCPSSA  291 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~-l~~~~~~~  291 (496)
                      ++.||.|++.+++........                                 ....+....+ .+.+.+ -+|.....
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~---------------------------------~~~~ri~n~~~~g~vv~m~a~~~~~~ 1162 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRV---------------------------------ATQVRIPNLKKDGVVVSMHAFTAIVQ 1162 (1431)
T ss_pred             EcCCCeEEEEEccccccccce---------------------------------eeeeecccccCCCceEEeeccccccc
Confidence            999999999999753110000                                 0000111111 122222 23332222


Q ss_pred             -ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-
Q 010997          292 -QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-  369 (496)
Q Consensus       292 -~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-  369 (496)
                       ..++.+..-+.|..||+++....-........+.|++++.+| .++++++|+..|.+.+||+|-      +.++..+. 
T Consensus      1163 S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF------~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1163 SHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRF------RVPILSWEH 1235 (1431)
T ss_pred             ceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeec------CceeecccC
Confidence             378888899999999999876322222334567899999999 899999999999999999997      66776664 


Q ss_pred             cCCCCEEEEEEcCCCC---CEEEEEe-CCCcEEEEECCCCCcccCCCCCCC------CCCCeeEEEecCCCCCcceEEec
Q 010997          370 GHSAAVLCVQWSPDKS---SVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTT------NYPAGLFFQHAGHRDKVVDFHWN  439 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~---~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~h~~~V~~~~~~  439 (496)
                      ++..+|..+..+|-.+   ..+++++ ..+.|.+|++.++...........      ..|..  .....+.-....+++.
T Consensus      1236 P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~--~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1236 PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN--DARKPDSLAGISCGVC 1313 (1431)
T ss_pred             cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccc--cCCCCCcccceeeecc
Confidence            3557888888887544   3343444 478899999998533221111100      00110  0000122223333444


Q ss_pred             CCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          440 ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       440 p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      .-++.++        +||.|..|+.||....
T Consensus      1314 ~~~~~~l--------tggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1314 EKNGFLL--------TGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             cCCceee--------ecCCccceeeccCCCc
Confidence            3344555        7888899999998743

>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3

Probab=99.74  E-value=4.7e-19  Score=125.27  Aligned_cols=69  Identities=38%  Similarity=0.672  Sum_probs=53.2

Q ss_pred             hhhhhccccCChhHhHhhhhCcCCCCcceEeccCCccc-CC--CcceEEEEEEeecCCCCCCeEEEEEEecc
Q 010997           41 DDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQ-AT--YKNRQRLYLSEQTDGSVPNTLVIANCEVV  109 (496)
Q Consensus        41 ~~~~~~w~~~~~~ly~~~~~~~~~wps~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  109 (496)
                      +|+|++||+|+|++|++++.+.++||||||||+|+... ..  +..++++++||||+++.+|+|+|++++++
T Consensus         1 ~e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p   72 (74)
T PF12265_consen    1 NEEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNRNYPHSQYLLLGTQTSGQEQNYLYVMKVSLP   72 (74)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT-SEEEEEEEEE---SS-S-EEEEEEEEEEE
T ss_pred             CcceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCCCCccEEEEEEEECcCCCCCCEEEEEEEeCC
Confidence            58999999999999999999999999999999998763 32  36789999999999999999999998874

1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=1.7e-16  Score=146.78  Aligned_cols=201  Identities=16%  Similarity=0.297  Sum_probs=154.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  232 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~  232 (496)
                      .+.|+.++.||.+.|-+-..             +.......|.+ ++.+-.|+|+|.-|+|++.||.|++|.-.....  
T Consensus        75 ~d~~~i~s~DGkf~il~k~~-------------rVE~sv~AH~~-A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR--  138 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSA-------------RVERSISAHAA-AISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR--  138 (737)
T ss_pred             cceEEEEcCCceEEEecccc-------------hhhhhhhhhhh-hhhhcccCCCCceeeeecCCceEEEEeccchHH--
Confidence            35688889999998877543             33346678887 789999999999999999999999998643211  


Q ss_pred             cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC
Q 010997          233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT  312 (496)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~  312 (496)
                                                             .++.....+|.|++|.|+....+++.+  +.+.|=-+....
T Consensus       139 ---------------------------------------Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~  177 (737)
T KOG1524|consen  139 ---------------------------------------STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS  177 (737)
T ss_pred             ---------------------------------------HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc
Confidence                                                   233345678999999999976666654  456665555544


Q ss_pred             ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997          313 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       313 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~  392 (496)
                        .+...++|.+-|.++.|+| ..+++++|+.|-..++||-.       +.++..-..|..+|++++|.|+.  +++.++
T Consensus       178 --k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-------G~~Lf~S~~~ey~ITSva~npd~--~~~v~S  245 (737)
T KOG1524|consen  178 --KIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-------GANLFTSAAEEYAITSVAFNPEK--DYLLWS  245 (737)
T ss_pred             --ceeEEeccCcEEEEeecCc-cccceeecCCceeEEeeccc-------CcccccCChhccceeeeeecccc--ceeeee
Confidence              3445679999999999999 89999999999999999987       58888888999999999999993  566776


Q ss_pred             CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       393 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      . .+.+   +.+                       ...+.|..++|++||..+.+.+
T Consensus       246 ~-nt~R---~~~-----------------------p~~GSifnlsWS~DGTQ~a~gt  275 (737)
T KOG1524|consen  246 Y-NTAR---FSS-----------------------PRVGSIFNLSWSADGTQATCGT  275 (737)
T ss_pred             e-eeee---ecC-----------------------CCccceEEEEEcCCCceeeccc
Confidence            3 3444   222                       2246799999999998866433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.6e-15  Score=148.67  Aligned_cols=266  Identities=17%  Similarity=0.244  Sum_probs=180.9

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      ..|.-.++|.+++| +++++|+|..||.|.+|.--...        ........+.-|.+ .|.+++|+++|.+|+||+.
T Consensus       202 ~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~--------~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~  271 (792)
T KOG1963|consen  202 VHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSS--------DDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGR  271 (792)
T ss_pred             hhhcccceeEEecc-ccceEEEeccCCcEEEEeccccc--------cccccceEEEeccc-ccceeEEecCCceEeeccc
Confidence            45777899999999 99999999999999999754411        01133456778888 6999999999999999999


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      .|.+.+|.+.++..                                         +-+..-.++|..+.++|++ .+.+.
T Consensus       272 E~VLv~Wq~~T~~k-----------------------------------------qfLPRLgs~I~~i~vS~ds-~~~sl  309 (792)
T KOG1963|consen  272 EGVLVLWQLETGKK-----------------------------------------QFLPRLGSPILHIVVSPDS-DLYSL  309 (792)
T ss_pred             ceEEEEEeecCCCc-----------------------------------------ccccccCCeeEEEEEcCCC-CeEEE
Confidence            99999999987642                                         2233456789999999999 67888


Q ss_pred             EcCCCeEEEEEccCCCcc-ceee--------eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC--------
Q 010997          297 VGDDSCLILWDARVGTSP-VIKV--------EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN--------  359 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~-~~~~--------~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~--------  359 (496)
                      ...|..|.+..+.+.... .+..        .....+-.+.++++| ..+.++-.+..|.|.+||+.+.+..        
T Consensus       310 ~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~  388 (792)
T KOG1963|consen  310 VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE  388 (792)
T ss_pred             EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence            888999999877543210 0000        111234456778888 6677777778888888887652210        


Q ss_pred             ----CC---------------C------------------CCce-----------------EeccCCCCEEEEEEcCCCC
Q 010997          360 ----GV---------------G------------------SPIN-----------------KFEGHSAAVLCVQWSPDKS  385 (496)
Q Consensus       360 ----~~---------------~------------------~~~~-----------------~~~~h~~~i~~l~~sp~~~  385 (496)
                          +.               +                  ....                 ....|...+...+|.+..+
T Consensus       389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r  468 (792)
T KOG1963|consen  389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR  468 (792)
T ss_pred             cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence                00               0                  0000                 0114555555555554333


Q ss_pred             C-EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEE
Q 010997          386 S-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI  464 (496)
Q Consensus       386 ~-llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~i  464 (496)
                      . .+++++.||.++||-+.........     .....+.....-|..++++++|+.+|..+.+         |.|++|.|
T Consensus       469 s~~~vta~~dg~~KiW~~~~~~n~~k~-----~s~W~c~~i~sy~k~~i~a~~fs~dGslla~---------s~~~~Iti  534 (792)
T KOG1963|consen  469 SVRCVTASVDGDFKIWVFTDDSNIYKK-----SSNWTCKAIGSYHKTPITALCFSQDGSLLAV---------SFDDTITI  534 (792)
T ss_pred             cceeEEeccCCeEEEEEEecccccCcC-----ccceEEeeeeccccCcccchhhcCCCcEEEE---------ecCCEEEE
Confidence            2 5679999999999999653221111     1222344444458889999999998864333         23489999


Q ss_pred             eecCC
Q 010997          465 WRMSD  469 (496)
Q Consensus       465 w~~~~  469 (496)
                      ||...
T Consensus       535 wd~~~  539 (792)
T KOG1963|consen  535 WDYDT  539 (792)
T ss_pred             ecCCC
Confidence            99985

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.73  E-value=2.8e-16  Score=136.62  Aligned_cols=220  Identities=15%  Similarity=0.230  Sum_probs=166.1

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      +|+|.+|++|...+|.+-....|.|+......                                     ..++.+++..|
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------------------------------~w~~~htls~H   54 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------------------------------LWEPAHTLSEH   54 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCCC-------------------------------------Cceeceehhhh
Confidence            79999999999999999999999999876432                                     24455888999


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccC-CCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                      ...|+.|+|+|.. +.|++|+.|..-++|.... ++......+..++...++|.|+| .++.||+|+....|.+|-+...
T Consensus        55 d~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~E  132 (361)
T KOG1523|consen   55 DKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQE  132 (361)
T ss_pred             CcceeEEeecCCC-CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecc
Confidence            9999999999998 7899999999999999844 33333445567899999999999 9999999999999999987762


Q ss_pred             CCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC----CCCCC-eeEEEecCCCC
Q 010997          357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT----TNYPA-GLFFQHAGHRD  431 (496)
Q Consensus       357 ~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~-~~~~~~~~h~~  431 (496)
                      ..  -....+.-+.+.+.|+++.|+|++- +||+|+.|+..+||..--.  .....+..    ...|. +++.......+
T Consensus       133 Nd--WWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK--~Vdekpap~pWgsk~PFG~lm~E~~~~gg  207 (361)
T KOG1523|consen  133 ND--WWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIK--GVDEKPAPTPWGSKMPFGQLMSEASSSGG  207 (361)
T ss_pred             cc--eehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeee--ccccCCCCCCCccCCcHHHHHHhhccCCC
Confidence            21  0111223345778899999999987 7899999999999986432  11111111    11222 23444445677


Q ss_pred             CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .|..+.|+|+|..| +-++.       |.++.+=|...
T Consensus       208 wvh~v~fs~sG~~l-awv~H-------ds~v~~~da~~  237 (361)
T KOG1523|consen  208 WVHGVLFSPSGNRL-AWVGH-------DSTVSFVDAAG  237 (361)
T ss_pred             ceeeeEeCCCCCEe-eEecC-------CCceEEeecCC
Confidence            89999999988765 44444       48999988874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=1.7e-15  Score=148.96  Aligned_cols=222  Identities=12%  Similarity=0.101  Sum_probs=148.3

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      +..|.+.|...+|+| +++.||..+.+   ..|++||+.++..          +.+..+.+|    ...++|+|+|++|+
T Consensus       199 lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~----------~~l~~~~g~----~~~~~wSPDG~~La  263 (429)
T PRK01742        199 VNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGAR----------KVVASFRGH----NGAPAFSPDGSRLA  263 (429)
T ss_pred             eccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCce----------EEEecCCCc----cCceeECCCCCEEE
Confidence            456788899999999 77778776643   3799999987621          112223333    24689999999888


Q ss_pred             Ee-cCCCcEEEEecC--CccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          213 SG-GKDKSVVLWSIQ--DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       213 sg-~~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      .+ +.+|.+.||.++  ++.                                         ...+..+...+....|+|+
T Consensus       264 ~~~~~~g~~~Iy~~d~~~~~-----------------------------------------~~~lt~~~~~~~~~~wSpD  302 (429)
T PRK01742        264 FASSKDGVLNIYVMGANGGT-----------------------------------------PSQLTSGAGNNTEPSWSPD  302 (429)
T ss_pred             EEEecCCcEEEEEEECCCCC-----------------------------------------eEeeccCCCCcCCEEECCC
Confidence            76 468887777543  211                                         1334456667788999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      +..+++++..+|...||++....... ... .+..  .+.+|+| ++.+|+.++.++ +.+||+.+      +... .+.
T Consensus       303 G~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~------g~~~-~lt  369 (429)
T PRK01742        303 GQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTS------GSTE-VLS  369 (429)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCC------CCeE-Eec
Confidence            95555566678889999876543212 222 3333  4678999 899988887765 55699887      3332 222


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      .. .....+.|+|+|+. |+.++.++.+.+|++....             ......+.+|.+.+...+|+|-
T Consensus       370 ~~-~~~~~~~~sPdG~~-i~~~s~~g~~~~l~~~~~~-------------G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        370 ST-FLDESPSISPNGIM-IIYSSTQGLGKVLQLVSAD-------------GRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CC-CCCCCceECCCCCE-EEEEEcCCCceEEEEEECC-------------CCceEEccCCCCCCCCcccCCC
Confidence            11 12356889999996 4577778888888764310             1234556678888999999984

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.8e-14  Score=119.59  Aligned_cols=207  Identities=15%  Similarity=0.210  Sum_probs=146.6

Q ss_pred             cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceE--EecCC----CCcceeeee
Q 010997          131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI--LTGHQ----DNAEFALAM  204 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--l~~h~----~~~v~~l~~  204 (496)
                      .+++...+|.++|+.++|..   .+|.+|+. |.|+=|...........      ++...  ...|.    -..|+++-.
T Consensus        53 ~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~------K~lwe~~~P~~~~~~evPeINam~l  122 (325)
T KOG0649|consen   53 LKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLAT------KRLWEVKIPMQVDAVEVPEINAMWL  122 (325)
T ss_pred             cceeeccccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhhccc------hhhhhhcCccccCcccCCccceeEe
Confidence            34556689999999999963   56777765 99999987665321110      11111  11111    125899999


Q ss_pred             cCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEE
Q 010997          205 CPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  284 (496)
Q Consensus       205 ~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  284 (496)
                      .|..+-++.++.|+.+.-||+++++.                                        ...+.+|++-|.++
T Consensus       123 dP~enSi~~AgGD~~~y~~dlE~G~i----------------------------------------~r~~rGHtDYvH~v  162 (325)
T KOG0649|consen  123 DPSENSILFAGGDGVIYQVDLEDGRI----------------------------------------QREYRGHTDYVHSV  162 (325)
T ss_pred             ccCCCcEEEecCCeEEEEEEecCCEE----------------------------------------EEEEcCCcceeeee
Confidence            99888777777899999999987654                                        37899999999999


Q ss_pred             EEccCCCceEEEEcCCCeEEEEEccCCCccceeee---------ccC-CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997          285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---------KAH-DADLHCVDWNPLDDNLILTGSADNSVRMFDRR  354 (496)
Q Consensus       285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~-~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~  354 (496)
                      .--... ..+++|++||++++||.++.+.  ...+         ..| ...|.+++-   +...|++|+ ...+.+|.++
T Consensus       163 v~R~~~-~qilsG~EDGtvRvWd~kt~k~--v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslwhLr  235 (325)
T KOG0649|consen  163 VGRNAN-GQILSGAEDGTVRVWDTKTQKH--VSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLR  235 (325)
T ss_pred             eecccC-cceeecCCCccEEEEeccccce--eEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEEecc
Confidence            884444 4699999999999999999872  2222         122 345677776   456777765 4579999999


Q ss_pred             CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      +      .++...|. -...+..+.|..+   .+++++..+.|.-|.+..
T Consensus       236 s------se~t~vfp-ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  236 S------SESTCVFP-IPARVHLVDFVDD---CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             C------CCceEEEe-cccceeEeeeecc---eEEEeccccceeeeeecc
Confidence            9      44555443 3556788888765   345788888999999876

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.70  E-value=2.2e-15  Score=139.58  Aligned_cols=140  Identities=22%  Similarity=0.428  Sum_probs=114.5

Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC---cc-----------------------ceeeeccCCCCeEEEEe
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT---SP-----------------------VIKVEKAHDADLHCVDW  331 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~-----------------------~~~~~~~~~~~v~~i~~  331 (496)
                      +..|+++.|-|.++..|+.+-.+|.+.+||..-..   .+                       .+.........|+.++|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            36899999999888899999999999999864211   00                       01111123458899999


Q ss_pred             cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997          332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  411 (496)
Q Consensus       332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~  411 (496)
                      +| ++.+||+.+.||.+||||..+      ...+..++..-+...||+|||||++ +++|++|..|.||.+...      
T Consensus       299 S~-DG~~LA~VSqDGfLRvF~fdt------~eLlg~mkSYFGGLLCvcWSPDGKy-IvtGGEDDLVtVwSf~er------  364 (636)
T KOG2394|consen  299 SP-DGKYLATVSQDGFLRIFDFDT------QELLGVMKSYFGGLLCVCWSPDGKY-IVTGGEDDLVTVWSFEER------  364 (636)
T ss_pred             cC-CCceEEEEecCceEEEeeccH------HHHHHHHHhhccceEEEEEcCCccE-EEecCCcceEEEEEeccc------
Confidence            99 999999999999999999998      4566666666788999999999997 579999999999999874      


Q ss_pred             CCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                               .++..-.||.+.|+.|+|.|
T Consensus       365 ---------RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  365 ---------RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ---------eEEEeccccccceeeEeecc
Confidence                     67777889999999999985

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=5.6e-16  Score=139.78  Aligned_cols=202  Identities=16%  Similarity=0.260  Sum_probs=146.3

Q ss_pred             eeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997          200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  279 (496)
Q Consensus       200 ~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  279 (496)
                      .+++|+++|..|++|+.||++|+|+..+..                                        .+.....|..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~----------------------------------------t~l~e~~~~~  187 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML----------------------------------------TILEEIAHHA  187 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcch----------------------------------------hhhhhHhhcC
Confidence            578999999999999999999999965332                                        2244557889


Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCC-----cEEEEEcCCCcEEEEeCC
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-----NLILTGSADNSVRMFDRR  354 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-----~~l~sgs~dg~i~iwd~~  354 (496)
                      .|.++.|+|++ .+|++.+.| ..+||+.+++..............+..+.|+. ++     .+++....-+.|+.||+.
T Consensus       188 eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~  264 (398)
T KOG0771|consen  188 EVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDIS  264 (398)
T ss_pred             ccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEee
Confidence            99999999999 799999999 99999999985222222123344556677776 44     233334445678887776


Q ss_pred             CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997          355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  434 (496)
Q Consensus       355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  434 (496)
                      ...... .-+..+.......|++++.+++|+ ++|.|+.||.|.|++..+..              .+.+....|...|+
T Consensus       265 ~w~~~~-~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq--------------~~~~vk~aH~~~VT  328 (398)
T KOG0771|consen  265 LWSGSN-FLRLRKKIKRFKSISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQ--------------RLQYVKEAHLGFVT  328 (398)
T ss_pred             eecccc-ccchhhhhhccCcceeEEEcCCCc-EEEEeccCCcEEEEEeceee--------------eeEeehhhheeeee
Confidence            533211 112223333345799999999999 57899999999999998751              34445677999999


Q ss_pred             eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          435 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       435 ~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .+.|+|+.+++.        +.+.|....|..+.
T Consensus       329 ~ltF~Pdsr~~~--------svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  329 GLTFSPDSRYLA--------SVSSDNEAAVTKLA  354 (398)
T ss_pred             eEEEcCCcCccc--------ccccCCceeEEEEe
Confidence            999999887765        44445888888776

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.69  E-value=5.4e-16  Score=131.28  Aligned_cols=241  Identities=16%  Similarity=0.208  Sum_probs=162.6

Q ss_pred             CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997          186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  265 (496)
Q Consensus       186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (496)
                      .|...+++|.. .|+++.|..++ +|++|..-|.|.+|++++....                                  
T Consensus         5 dP~fvLRp~~~-~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~----------------------------------   48 (323)
T KOG0322|consen    5 DPFFVLRPHSS-SVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDL----------------------------------   48 (323)
T ss_pred             CCeeEeccccc-hheehhhccch-hhhcccccceEEEEEeecCccc----------------------------------
Confidence            67788999988 69999998766 4999999999999999865322                                  


Q ss_pred             CCcCCeeeee-cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc-----------------------cc------
Q 010997          266 PSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----------------------PV------  315 (496)
Q Consensus       266 ~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----------------------~~------  315 (496)
                            ..+. .|...|+.+.--|++  .+.+-+.|+.+.+|++.-...                       +.      
T Consensus        49 ------~~~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y  120 (323)
T KOG0322|consen   49 ------PLIRLFGRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY  120 (323)
T ss_pred             ------hhhhhhccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec
Confidence                  2222 345566666666654  366666777777776653110                       00      


Q ss_pred             ------------------eee----eccCCCCeEEEEecCCC--CcEEEEEcCCCcEEEEeCCCCCCC----CCCCCceE
Q 010997          316 ------------------IKV----EKAHDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRNLTSN----GVGSPINK  367 (496)
Q Consensus       316 ------------------~~~----~~~~~~~v~~i~~sp~~--~~~l~sgs~dg~i~iwd~~~~~~~----~~~~~~~~  367 (496)
                                        +..    ..+..+.+.|..+.-..  .-++++|..+|.+.+||+......    ...+....
T Consensus       121 p~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~  200 (323)
T KOG0322|consen  121 PSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESP  200 (323)
T ss_pred             CCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccc
Confidence                              000    01123456666643322  346778889999999999982110    01133444


Q ss_pred             eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                      ...|..+|.++.+.+.-..= ++|+.+..+..|.+........       .+.+.    .--...|..+..-||++. +|
T Consensus       201 ~ash~qpvlsldyas~~~rG-isgga~dkl~~~Sl~~s~gslq-------~~~e~----~lknpGv~gvrIRpD~KI-lA  267 (323)
T KOG0322|consen  201 NASHKQPVLSLDYASSCDRG-ISGGADDKLVMYSLNHSTGSLQ-------IRKEI----TLKNPGVSGVRIRPDGKI-LA  267 (323)
T ss_pred             hhhccCcceeeeechhhcCC-cCCCccccceeeeeccccCccc-------ccceE----EecCCCccceEEccCCcE-Ee
Confidence            56799999999998754432 4788888899999976311110       11111    112345888999997764 44


Q ss_pred             EecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                             |+|+|+.||||..+      +..+++.|+-|++.|++|||||
T Consensus       268 -------TAGWD~RiRVyswr------tl~pLAVLkyHsagvn~vAfsp  303 (323)
T KOG0322|consen  268 -------TAGWDHRIRVYSWR------TLNPLAVLKYHSAGVNAVAFSP  303 (323)
T ss_pred             -------ecccCCcEEEEEec------cCCchhhhhhhhcceeEEEeCC
Confidence                   88899999999999      7899999999999999999998

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=5.3e-16  Score=139.94  Aligned_cols=201  Identities=16%  Similarity=0.212  Sum_probs=145.0

Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEE
Q 010997          144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW  223 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iw  223 (496)
                      .+++|+. ++..||+|+.||.+|||+....            ........|.. .|.+|.|+|||++|++-+.| ..+||
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~------------~t~l~e~~~~~-eV~DL~FS~dgk~lasig~d-~~~VW  212 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSM------------LTILEEIAHHA-EVKDLDFSPDGKFLASIGAD-SARVW  212 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcc------------hhhhhhHhhcC-ccccceeCCCCcEEEEecCC-ceEEE
Confidence            7888998 8889999999999999998776            44556667776 69999999999999999999 99999


Q ss_pred             ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC--Cc-e-EEEEcC
Q 010997          224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS--AQ-E-FCSVGD  299 (496)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--~~-~-l~s~~~  299 (496)
                      +.+++.......+                                      .........+.|+.++  +. + ++.-..
T Consensus       213 ~~~~g~~~a~~t~--------------------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~  254 (398)
T KOG0771|consen  213 SVNTGAALARKTP--------------------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFP  254 (398)
T ss_pred             EeccCchhhhcCC--------------------------------------cccchhhhhceecccCCCceEEEEEecCC
Confidence            9998743222211                                      0112223344554433  11 2 222334


Q ss_pred             CCeEEEEEccCCCcc---ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997          300 DSCLILWDARVGTSP---VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL  376 (496)
Q Consensus       300 dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~  376 (496)
                      -+.|+.||+......   ...........|.+++.++ ++.++|.|+.||.|.|++..++.     .....-+.|...|+
T Consensus       255 ~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq-----~~~~vk~aH~~~VT  328 (398)
T KOG0771|consen  255 GGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQ-----RLQYVKEAHLGFVT  328 (398)
T ss_pred             CCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceee-----eeEeehhhheeeee
Confidence            456666666543320   1111123345799999999 99999999999999999999843     23334467999999


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          377 CVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      .+.|+|+.+++ ++-+.|..+.|..+..
T Consensus       329 ~ltF~Pdsr~~-~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  329 GLTFSPDSRYL-ASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eEEEcCCcCcc-cccccCCceeEEEEee
Confidence            99999999974 6888899999988866

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=3.7e-16  Score=142.17  Aligned_cols=259  Identities=13%  Similarity=0.154  Sum_probs=190.3

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  221 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~  221 (496)
                      .-..+.|+. +|..|+.|+..|.|-.+|..+.            +....+.-  ...|..+.|..+.++||.+- ...+.
T Consensus       131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~------------~L~~Ei~v--~Etv~Dv~~LHneq~~AVAQ-K~y~y  194 (545)
T KOG1272|consen  131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTK------------KLHFEINV--METVRDVTFLHNEQFFAVAQ-KKYVY  194 (545)
T ss_pred             CCeeeeecC-CccEEEecCCccceeeeecccc------------eeeeeeeh--hhhhhhhhhhcchHHHHhhh-hceEE
Confidence            356788888 9999999999999999999988            33333332  33588999998888777664 67899


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      |||-....                                         ++.+..| ..|..+.|-|.. .+|++++..|
T Consensus       195 vYD~~GtE-----------------------------------------lHClk~~-~~v~rLeFLPyH-fLL~~~~~~G  231 (545)
T KOG1272|consen  195 VYDNNGTE-----------------------------------------LHCLKRH-IRVARLEFLPYH-FLLVAASEAG  231 (545)
T ss_pred             EecCCCcE-----------------------------------------Eeehhhc-Cchhhhcccchh-heeeecccCC
Confidence            99864311                                         2333333 468999999998 8999999999


Q ss_pred             eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc
Q 010997          302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS  381 (496)
Q Consensus       302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s  381 (496)
                      .++--|+..++  .+..+....+.+..++-+| -...+-+|...|+|.+|...+      ..++..+-.|.++|.+|++.
T Consensus       232 ~L~Y~DVS~Gk--lVa~~~t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~s------kePLvKiLcH~g~V~siAv~  302 (545)
T KOG1272|consen  232 FLKYQDVSTGK--LVASIRTGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNS------KEPLVKILCHRGPVSSIAVD  302 (545)
T ss_pred             ceEEEeechhh--hhHHHHccCCccchhhcCC-ccceEEEcCCCceEEecCCCC------cchHHHHHhcCCCcceEEEC
Confidence            99999999998  5555666778889999999 788999999999999999988      78899999999999999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCe
Q 010997          382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT  461 (496)
Q Consensus       382 p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~  461 (496)
                      ++|.+ +||++.|..|+|||++...+              +.....  ..+...+++|..| .|+++.+         ..
T Consensus       303 ~~G~Y-MaTtG~Dr~~kIWDlR~~~q--------------l~t~~t--p~~a~~ls~Sqkg-lLA~~~G---------~~  355 (545)
T KOG1272|consen  303 RGGRY-MATTGLDRKVKIWDLRNFYQ--------------LHTYRT--PHPASNLSLSQKG-LLALSYG---------DH  355 (545)
T ss_pred             CCCcE-EeecccccceeEeeeccccc--------------cceeec--CCCcccccccccc-ceeeecC---------Ce
Confidence            99997 57999999999999998521              111111  2356778888643 3443333         57


Q ss_pred             EEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          462 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       462 i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      |.||.=.-.. .+..+....-....++|..|.|.|
T Consensus       356 v~iw~d~~~~-s~~~~~pYm~H~~~~~V~~l~FcP  389 (545)
T KOG1272|consen  356 VQIWKDALKG-SGHGETPYMNHRCGGPVEDLRFCP  389 (545)
T ss_pred             eeeehhhhcC-CCCCCcchhhhccCcccccceecc
Confidence            9999633110 001111111111234788888776

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.6e-14  Score=127.81  Aligned_cols=274  Identities=14%  Similarity=0.161  Sum_probs=173.9

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCc
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKS  219 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~  219 (496)
                      -.+.-++|++ .-.-+|++..|-.|++||-...             ....++......|+|++|-|.+. .|+.|. -+-
T Consensus        99 ~dlr~~aWhq-H~~~fava~nddvVriy~ksst-------------~pt~Lks~sQrnvtclawRPlsaselavgC-r~g  163 (445)
T KOG2139|consen   99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSST-------------CPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAG  163 (445)
T ss_pred             cceeeEeech-hhhhhhhhccCcEEEEeccCCC-------------CCceecchhhcceeEEEeccCCcceeeeee-cce
Confidence            4577889988 5567888999999999997653             11234433334589999999754 566666 456


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC--eeeeecCCCceeEEEEccCCCceEEEE
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP--RGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      |++|...........                            ..+....+  +....+| .+|++++|.++| ..++++
T Consensus       164 IciW~~s~tln~~r~----------------------------~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tA  213 (445)
T KOG2139|consen  164 ICIWSDSRTLNANRN----------------------------IRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTA  213 (445)
T ss_pred             eEEEEcCcccccccc----------------------------cccccccchhheeCCCC-ceeeEEEEcCCC-CEEeec
Confidence            999987642211000                            00011111  1233455 689999999999 567776


Q ss_pred             c-CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE
Q 010997          298 G-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL  376 (496)
Q Consensus       298 ~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~  376 (496)
                      + .|..|.|||..++....+.  ....+.+.-+.||| ++.+|..++.|+..++|...+.     .....-.- -.+.|.
T Consensus       214 S~gsssi~iWdpdtg~~~pL~--~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~-----wt~erw~l-gsgrvq  284 (445)
T KOG2139|consen  214 SFGSSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQS-----WTKERWIL-GSGRVQ  284 (445)
T ss_pred             ccCcceEEEEcCCCCCccccc--ccCCCceeeEEEcC-CCCEEEEecccceeeeehhccc-----ceecceec-cCCcee
Confidence            6 5778999999998743333  24557788999999 9999999999999999965542     23333232 345899


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe------cC---CCCCcceEEecCCCCcEEE
Q 010997          377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH------AG---HRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~---h~~~V~~~~~~p~~~~l~~  447 (496)
                      ..+|+|+|++||.+++.  .-++|.+...++..............++..+      .+   -.+.+.+++|.|.|.++++
T Consensus       285 tacWspcGsfLLf~~sg--sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav  362 (445)
T KOG2139|consen  285 TACWSPCGSFLLFACSG--SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV  362 (445)
T ss_pred             eeeecCCCCEEEEEEcC--CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence            99999999998877764  4556776654433322211100111111111      11   2467899999999999988


Q ss_pred             EecCCCCCCCCCCeEEEeecCCC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      +.-...-.--.-..|.+||....
T Consensus       363 ~fKg~~~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  363 IFKGQSFVLLCKLHISRFDTRKS  385 (445)
T ss_pred             EEcCCchhhhhhhhhhhhccccc
Confidence            76432000111245666776543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=3.2e-14  Score=139.59  Aligned_cols=239  Identities=11%  Similarity=0.094  Sum_probs=152.6

Q ss_pred             CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec---CCCcEEEEecCCccccccCCcccc
Q 010997          163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG---KDKSVVLWSIQDHITSSATDPATA  239 (496)
Q Consensus       163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~---~Dg~i~iwd~~~~~~~~~~~~~~~  239 (496)
                      ..|.+||....            .+ ..+..+.. .+.+.+|+|||+.|+..+   .+..|.+|++.++..         
T Consensus       179 ~~l~~~d~dg~------------~~-~~lt~~~~-~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~---------  235 (429)
T PRK03629        179 YELRVSDYDGY------------NQ-FVVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---------  235 (429)
T ss_pred             eeEEEEcCCCC------------CC-EEeecCCC-ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe---------
Confidence            37899998765            22 22333433 578999999999887653   245789999875432         


Q ss_pred             ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC--eEEEEEccCCCcccee
Q 010997          240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK  317 (496)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~  317 (496)
                                                      ..+....+.+..+.|+|+|..++++.+.+|  .|.+||+.++.  . .
T Consensus       236 --------------------------------~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~--~-~  280 (429)
T PRK03629        236 --------------------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--I-R  280 (429)
T ss_pred             --------------------------------EEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC--E-E
Confidence                                            111112233446799999955555555555  58889998776  2 2


Q ss_pred             eeccCCCCeEEEEecCCCCcEEEEEcC-CCcEEEE--eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997          318 VEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMF--DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  394 (496)
Q Consensus       318 ~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iw--d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d  394 (496)
                      .+..+...+....|+| ++..|+..+. ++...||  |+..      + ....+..+........|+|+|.+|+.++..+
T Consensus       281 ~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~------g-~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~  352 (429)
T PRK03629        281 QVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNING------G-APQRITWEGSQNQDADVSSDGKFMVMVSSNG  352 (429)
T ss_pred             EccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCC------C-CeEEeecCCCCccCEEECCCCCEEEEEEccC
Confidence            3334455678899999 8887776655 4555555  5544      2 3344444445567899999999765555444


Q ss_pred             --CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCc
Q 010997          395 --GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY  472 (496)
Q Consensus       395 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~  472 (496)
                        ..|.+||+.....             ..+.  ..  .......|+|+|..++.++.+.     ....+.++++.    
T Consensus       353 g~~~I~~~dl~~g~~-------------~~Lt--~~--~~~~~p~~SpDG~~i~~~s~~~-----~~~~l~~~~~~----  406 (429)
T PRK03629        353 GQQHIAKQDLATGGV-------------QVLT--DT--FLDETPSIAPNGTMVIYSSSQG-----MGSVLNLVSTD----  406 (429)
T ss_pred             CCceEEEEECCCCCe-------------EEeC--CC--CCCCCceECCCCCEEEEEEcCC-----CceEEEEEECC----
Confidence              3588889876311             1111  11  1234678999998877655422     12457778776    


Q ss_pred             CCchHHHHHHHhccceEEEeccCC
Q 010997          473 RPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       473 ~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                         +.....+.+|.+.+...+|+|
T Consensus       407 ---G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        407 ---GRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ---CCCeEECccCCCCcCCcccCC
Confidence               445566778888999999998

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.1e-14  Score=142.67  Aligned_cols=279  Identities=13%  Similarity=0.187  Sum_probs=180.8

Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC---CceEEecCCCcEEE
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE---PYVLSGGKDKSVVL  222 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~---~~l~sg~~Dg~i~i  222 (496)
                      -.|++ +.+.++....+ .|.||...++            .++..+.+|.. ++..+.+.|..   .++++++.||.|++
T Consensus        22 avfSn-D~k~l~~~~~~-~V~VyS~~Tg------------~~i~~l~~~~a-~l~s~~~~~~~~~~~~~~~~sl~G~I~v   86 (792)
T KOG1963|consen   22 AVFSN-DAKFLFLCTGN-FVKVYSTATG------------ECITSLEDHTA-PLTSVIVLPSSENANYLIVCSLDGTIRV   86 (792)
T ss_pred             ccccc-CCcEEEEeeCC-EEEEEecchH------------hhhhhcccccC-ccceeeecCCCccceEEEEEecCccEEE
Confidence            34677 66666665554 9999999999            66678999998 68899888864   37889999999999


Q ss_pred             EecCCccccccCCccccc----c----CCCCCceeccCCC---------CCCCCC--CCCCCCCcCCeeeeecCCCceeE
Q 010997          223 WSIQDHITSSATDPATAK----S----AGSSGSIIKQSPK---------PGDGND--KAADGPSVGPRGIYNGHEDTVED  283 (496)
Q Consensus       223 wd~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~  283 (496)
                      ||...+............    .    ...+.........         ......  .............+..|.. -..
T Consensus        87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~  165 (792)
T KOG1963|consen   87 WDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKS  165 (792)
T ss_pred             ecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-Ccc
Confidence            999887543322221100    0    0000000000000         000000  0000000011111222322 356


Q ss_pred             EEEccCCCceEEEEcCCCeEEEEEccCCCcc--ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997          284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  361 (496)
Q Consensus       284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~  361 (496)
                      +.+++.+  .+.....+..+.+|+.......  .......|...++|.+++| +++++|+|..||.|.+|.--..  ...
T Consensus       166 I~~~~~g--e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~--~~~  240 (792)
T KOG1963|consen  166 IVDNNSG--EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGS--SDD  240 (792)
T ss_pred             EEEcCCc--eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEecccc--ccc
Confidence            7777777  3555556778999998774411  1112235777799999999 9999999999999999953321  011


Q ss_pred             CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      ....+.+..|...|++++|+++|.+|+ ||+..|.+.+|.+.+.++             +.+   ..-.++|..+.++|+
T Consensus       241 ~~t~t~lHWH~~~V~~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~~k-------------qfL---PRLgs~I~~i~vS~d  303 (792)
T KOG1963|consen  241 SETCTLLHWHHDEVNSLSFSSDGAYLL-SGGREGVLVLWQLETGKK-------------QFL---PRLGSPILHIVVSPD  303 (792)
T ss_pred             cccceEEEecccccceeEEecCCceEe-ecccceEEEEEeecCCCc-------------ccc---cccCCeeEEEEEcCC
Confidence            345667888999999999999999865 999999999999998532             222   223468999999998


Q ss_pred             CCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          442 DPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      +....+.++        |+.|.+-...++
T Consensus       304 s~~~sl~~~--------DNqI~li~~~dl  324 (792)
T KOG1963|consen  304 SDLYSLVLE--------DNQIHLIKASDL  324 (792)
T ss_pred             CCeEEEEec--------CceEEEEeccch
Confidence            887664443        489999998743

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.66  E-value=1.7e-16  Score=153.82  Aligned_cols=225  Identities=19%  Similarity=0.358  Sum_probs=168.5

Q ss_pred             CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997          186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  265 (496)
Q Consensus       186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (496)
                      +.+..+.||-. +|+|..|...|.++++|+.|..|+||..++..+                                   
T Consensus       181 k~ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~-----------------------------------  224 (1113)
T KOG0644|consen  181 KNIKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETARC-----------------------------------  224 (1113)
T ss_pred             HHHHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchhh-----------------------------------
Confidence            34456789987 799999999999999999999999999876544                                   


Q ss_pred             CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997          266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  345 (496)
Q Consensus       266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d  345 (496)
                           +..+.||.+.|++++.+..+ .++++++.|..|++|-+..+.  .+..+.+|++.|++|+|+|     +++.+.|
T Consensus       225 -----lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgavtaiafsP-----~~sss~d  291 (1113)
T KOG0644|consen  225 -----LASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAVTAIAFSP-----RASSSDD  291 (1113)
T ss_pred             -----hccCCCCccccchhccchhh-hhhhhcccCceEEEEecCCCc--hHHHHhccccceeeeccCc-----cccCCCC
Confidence                 35678999999999998877 789999999999999999988  6777889999999999999     2378899


Q ss_pred             CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  425 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  425 (496)
                      |++++||.+-........+. .+. ...-+.++.|..++.. ++|++.|+.-..|.+...                    
T Consensus       292 gt~~~wd~r~~~~~y~prp~-~~~-~~~~~~s~~~~~~~~~-f~Tgs~d~ea~n~e~~~l--------------------  348 (1113)
T KOG0644|consen  292 GTCRIWDARLEPRIYVPRPL-KFT-EKDLVDSILFENNGDR-FLTGSRDGEARNHEFEQL--------------------  348 (1113)
T ss_pred             CceEeccccccccccCCCCC-Ccc-cccceeeeeccccccc-cccccCCcccccchhhHh--------------------
Confidence            99999999821100001111 122 2356778888888875 579999999988887652                    


Q ss_pred             ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                       ..|...+.-+..+.+-....+++       -.+-.+++|++.      +++++..+.+|...+..+.+||
T Consensus       349 -~~~~~~lif~t~ssd~~~~~~~a-------r~~~~~~vwnl~------~g~l~H~l~ghsd~~yvLd~Hp  405 (1113)
T KOG0644|consen  349 -AWRSNLLIFVTRSSDLSSIVVTA-------RNDHRLCVWNLY------TGQLLHNLMGHSDEVYVLDVHP  405 (1113)
T ss_pred             -hhhccceEEEeccccccccceee-------eeeeEeeeeecc------cchhhhhhcccccceeeeeecC
Confidence             11111121122221222223322       234789999999      8999999999999999999988

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=5e-15  Score=138.28  Aligned_cols=302  Identities=17%  Similarity=0.249  Sum_probs=194.7

Q ss_pred             CCCeEEEEEEeccCcchhhhcc--ccccC-cccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997           97 VPNTLVIANCEVVKPRVAAAEH--ISQFN-EEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ  173 (496)
Q Consensus        97 ~~~~l~i~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~  173 (496)
                      ..|.+.|++++.-+........  ..... .......+..++-+.|+..-+.|..+|+...++|||..-..|++||+...
T Consensus         5 s~NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL   84 (703)
T KOG2321|consen    5 SVNDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL   84 (703)
T ss_pred             ccCceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccc
Confidence            4677788887754432111100  00000 00112345667888999999999999955566788999999999999876


Q ss_pred             CCccccCCCCCCCCceEEecCCCCcceeee-ecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccC
Q 010997          174 PNRHAVLGATNSRPDLILTGHQDNAEFALA-MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS  252 (496)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~-~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (496)
                                    ...+..|.+..+..+. ++.|-..++.--.|.+|-+..--....                      
T Consensus        85 --------------SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy----------------------  128 (703)
T KOG2321|consen   85 --------------SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY----------------------  128 (703)
T ss_pred             --------------eeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee----------------------
Confidence                          2456677665443333 333333444444577776653221000                      


Q ss_pred             CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec
Q 010997          253 PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN  332 (496)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s  332 (496)
                                          .+ .-.....+++++..... |+.++....|.-+++..+.  .+..+....+.++++..+
T Consensus       129 --------------------~~-RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGr--fL~P~~~~~~~lN~v~in  184 (703)
T KOG2321|consen  129 --------------------RT-RIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGR--FLNPFETDSGELNVVSIN  184 (703)
T ss_pred             --------------------ee-ecCcCCccccccCCCcc-EEEeecCcceEEEEccccc--cccccccccccceeeeec
Confidence                                00 00123356677655433 4445555678888998888  566666677899999999


Q ss_pred             CCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe------ccCCC-----CEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997          333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF------EGHSA-----AVLCVQWSPDKSSVFGSSAEDGLLNIWD  401 (496)
Q Consensus       333 p~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~------~~h~~-----~i~~l~~sp~~~~llas~~~dg~i~iwd  401 (496)
                      + ...+|++|+.+|.|..||.|.      ...+.++      ..|.+     .|+++.|+.+|-. +++|..+|.|.|||
T Consensus       185 ~-~hgLla~Gt~~g~VEfwDpR~------ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aVGts~G~v~iyD  256 (703)
T KOG2321|consen  185 E-EHGLLACGTEDGVVEFWDPRD------KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAVGTSTGSVLIYD  256 (703)
T ss_pred             C-ccceEEecccCceEEEecchh------hhhheeeecccccCCCccccccCcceEEEecCCcee-EEeeccCCcEEEEE
Confidence            9 889999999999999999998      3333333      23333     4999999998875 68999999999999


Q ss_pred             CCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCC-CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHH
Q 010997          402 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD-PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA  480 (496)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~-~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~  480 (496)
                      ++...              .++..-.+...+|..+.|.+.+ ...++|+..        ..++|||-.      +++.+.
T Consensus       257 LRa~~--------------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk--------~~~kiWd~~------~Gk~~a  308 (703)
T KOG2321|consen  257 LRASK--------------PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK--------RILKIWDEC------TGKPMA  308 (703)
T ss_pred             cccCC--------------ceeecccCCccceeeecccccCCCceEEecch--------HHhhhcccc------cCCcee
Confidence            99841              2232233445689999998763 334555443        789999998      566666


Q ss_pred             HHHhccceEEEeccC
Q 010997          481 ELEKFKAHVISCTSK  495 (496)
Q Consensus       481 ~l~~h~~~v~~~~~s  495 (496)
                      .++.-. .+..+++-
T Consensus       309 siEpt~-~lND~C~~  322 (703)
T KOG2321|consen  309 SIEPTS-DLNDFCFV  322 (703)
T ss_pred             eccccC-CcCceeee
Confidence            665333 25555543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.65  E-value=4.5e-14  Score=121.68  Aligned_cols=269  Identities=13%  Similarity=0.129  Sum_probs=185.0

Q ss_pred             cceEEEecCCCceeEEEecC--CCCc-EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC
Q 010997          131 VKKHKTIIHPGEVNRIRELP--QNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT  207 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p--~~~~-~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~  207 (496)
                      ...++...|. .++.+.|.-  .++. .++-+-.+|.|.++..........+.+      +....-... .-.++.|++.
T Consensus        61 l~~~q~~dts-~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~------ls~~ki~~~-~~lslD~~~~  132 (339)
T KOG0280|consen   61 LDTLQCTDTS-TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG------LSSKKISVV-EALSLDISTS  132 (339)
T ss_pred             cceeeeeccc-ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc------cchhhhhhe-eeeEEEeecc
Confidence            3344444444 466666653  3444 567777889999998776532221111      100000001 1247789998


Q ss_pred             CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997          208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  287 (496)
Q Consensus       208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  287 (496)
                      +..++++..+|.+.+-+....                                      ..+..+.++.|.-++....|+
T Consensus       133 ~~~i~vs~s~G~~~~v~~t~~--------------------------------------~le~vq~wk~He~E~Wta~f~  174 (339)
T KOG0280|consen  133 GTKIFVSDSRGSISGVYETEM--------------------------------------VLEKVQTWKVHEFEAWTAKFS  174 (339)
T ss_pred             CceEEEEcCCCcEEEEeccee--------------------------------------eeeecccccccceeeeeeecc
Confidence            989999999999985554321                                      122235778899999999999


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      ...++++.+|++|+.+..||+|.+..-.....+.|...|.+|.-+|..+.+++||+.|-.|++||.|++.     +++..
T Consensus       175 ~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-----kPl~~  249 (339)
T KOG0280|consen  175 DKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-----KPLFK  249 (339)
T ss_pred             cCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-----Ccccc
Confidence            8888999999999999999999655333333568999999999999789999999999999999999864     56554


Q ss_pred             eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                      -. -.+.|..+.++|.-...+..++.-+-.+|-+++....+.          ...+..+..|.+-++.-.|... ..++|
T Consensus       250 ~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~----------~~~~~s~~~hdSl~YG~DWd~~-~~~lA  317 (339)
T KOG0280|consen  250 AK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEF----------QIVLPSDKIHDSLCYGGDWDSK-DSFLA  317 (339)
T ss_pred             Cc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccch----------heeeeccccccceeeccccccc-cceee
Confidence            43 348899999999754333345555557888887642221          1245567788888888888554 45688


Q ss_pred             EecCCCCCCCCCCeEE-EeecC
Q 010997          448 SVSDDCDSTGGGGTLQ-IWRMS  468 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~-iw~~~  468 (496)
                      +|+-      .|+.++ +|-.-
T Consensus       318 TCsF------YDk~~~~~Wl~~  333 (339)
T KOG0280|consen  318 TCSF------YDKKIRQLWLHI  333 (339)
T ss_pred             eeec------cccceeeeeeec
Confidence            8664      378855 88544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=3.8e-14  Score=139.73  Aligned_cols=239  Identities=12%  Similarity=0.098  Sum_probs=152.4

Q ss_pred             CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC---CCcEEEEecCCccccccCCcccc
Q 010997          163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPATA  239 (496)
Q Consensus       163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg~i~iwd~~~~~~~~~~~~~~~  239 (496)
                      ..|.+||....            .+ ..+..+.. .+.+.+|+|+|+.|+.++.   +..|.+||+.++..         
T Consensus       184 ~~l~i~D~~g~------------~~-~~lt~~~~-~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---------  240 (433)
T PRK04922        184 YALQVADSDGY------------NP-QTILRSAE-PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---------  240 (433)
T ss_pred             EEEEEECCCCC------------Cc-eEeecCCC-ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---------
Confidence            36899998654            11 23444544 5789999999998887763   34699999875432         


Q ss_pred             ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC--eEEEEEccCCCcccee
Q 010997          240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK  317 (496)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~  317 (496)
                                                      ..+....+...++.|+|++..++++.+.+|  .|.+||+.++.   ..
T Consensus       241 --------------------------------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~  285 (433)
T PRK04922        241 --------------------------------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---LT  285 (433)
T ss_pred             --------------------------------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---eE
Confidence                                            122223334457899999965556666665  59999998776   23


Q ss_pred             eeccCCCCeEEEEecCCCCcEEEEEc-CCCc--EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997          318 VEKAHDADLHCVDWNPLDDNLILTGS-ADNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  394 (496)
Q Consensus       318 ~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d  394 (496)
                      .+..+.......+|+| ++..|+.++ .+|.  |.++|+..      +. ...+..+......++|+|+|++|+++...+
T Consensus       286 ~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~------g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~  357 (433)
T PRK04922        286 RLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG------GS-AERLTFQGNYNARASVSPDGKKIAMVHGSG  357 (433)
T ss_pred             ECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC------CC-eEEeecCCCCccCEEECCCCCEEEEEECCC
Confidence            3344555567889999 888777665 4555  55556654      22 333333334455789999999765554433


Q ss_pred             C--cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCc
Q 010997          395 G--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY  472 (496)
Q Consensus       395 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~  472 (496)
                      +  .|.+||+.....             ..   +. +........|+|++..++.+....     ..+.|.++++.    
T Consensus       358 ~~~~I~v~d~~~g~~-------------~~---Lt-~~~~~~~p~~spdG~~i~~~s~~~-----g~~~L~~~~~~----  411 (433)
T PRK04922        358 GQYRIAVMDLSTGSV-------------RT---LT-PGSLDESPSFAPNGSMVLYATREG-----GRGVLAAVSTD----  411 (433)
T ss_pred             CceeEEEEECCCCCe-------------EE---CC-CCCCCCCceECCCCCEEEEEEecC-----CceEEEEEECC----
Confidence            3  589999876311             11   11 222345679999998877654421     23567777775    


Q ss_pred             CCchHHHHHHHhccceEEEeccCC
Q 010997          473 RPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       473 ~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                         +.....+..+.+.+...+|||
T Consensus       412 ---g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        412 ---GRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ---CCceEEcccCCCCCCCCccCC
Confidence               334455555667788899998

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.63  E-value=1.3e-13  Score=131.45  Aligned_cols=243  Identities=9%  Similarity=0.144  Sum_probs=147.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe-cCCCcEEEEecCC-ccccc
Q 010997          155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG-GKDKSVVLWSIQD-HITSS  232 (496)
Q Consensus       155 ~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg-~~Dg~i~iwd~~~-~~~~~  232 (496)
                      ++++...++.|.+||+.+..         ..+....+... + ....++++|++++|+++ ..++.|.+|+++. +... 
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g---------~l~~~~~~~~~-~-~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-   71 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEG---------ALTLLQVVDVP-G-QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-   71 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCC---------ceeeeeEEecC-C-CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-
Confidence            34455778999999996431         11223344322 2 35689999999987665 4588999999862 1110 


Q ss_pred             cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC
Q 010997          233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT  312 (496)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~  312 (496)
                                                           ..... ...+....++|+|++..++++...++.|.+|++....
T Consensus        72 -------------------------------------~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         72 -------------------------------------FAAES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             -------------------------------------Eeeee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence                                                 00111 1122456899999995444455568999999997432


Q ss_pred             cc--ceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCC-CCCceEeccCCCCEEEEEEcCCCCCEE
Q 010997          313 SP--VIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGV-GSPINKFEGHSAAVLCVQWSPDKSSVF  388 (496)
Q Consensus       313 ~~--~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~-~~~~~~~~~h~~~i~~l~~sp~~~~ll  388 (496)
                      ..  ..... .+.....+++++| +++++ ++...++.|.+||+.+...... ........ .......++|+|++++++
T Consensus       114 ~~~~~~~~~-~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~ly  190 (330)
T PRK11028        114 IPVAPIQII-EGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAY  190 (330)
T ss_pred             CCCCceeec-cCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEE
Confidence            11  11222 2334567889999 77766 4555679999999976210000 00011111 123467899999999877


Q ss_pred             EEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC------CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeE
Q 010997          389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG------HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTL  462 (496)
Q Consensus       389 as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i  462 (496)
                      ++...++.|.+|++.......           ..+.....      +......+.++|++++++++...       ++.|
T Consensus       191 v~~~~~~~v~v~~~~~~~~~~-----------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~-------~~~I  252 (330)
T PRK11028        191 CVNELNSSVDVWQLKDPHGEI-----------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT-------ASLI  252 (330)
T ss_pred             EEecCCCEEEEEEEeCCCCCE-----------EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC-------CCeE
Confidence            665558999999997421110           11111111      11123468899999988875433       4899


Q ss_pred             EEeecC
Q 010997          463 QIWRMS  468 (496)
Q Consensus       463 ~iw~~~  468 (496)
                      .+|++.
T Consensus       253 ~v~~i~  258 (330)
T PRK11028        253 SVFSVS  258 (330)
T ss_pred             EEEEEe
Confidence            999996

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.5e-13  Score=135.65  Aligned_cols=239  Identities=13%  Similarity=0.130  Sum_probs=153.9

Q ss_pred             CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC---CCcEEEEecCCccccccCCcccc
Q 010997          163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPATA  239 (496)
Q Consensus       163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg~i~iwd~~~~~~~~~~~~~~~  239 (496)
                      ..|.++|....            . ...+..|.. .+.+.+|+|||+.|+..+.   +..|.+||+.++..         
T Consensus       182 ~~l~~~d~dg~------------~-~~~lt~~~~-~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---------  238 (435)
T PRK05137        182 KRLAIMDQDGA------------N-VRYLTDGSS-LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---------  238 (435)
T ss_pred             eEEEEECCCCC------------C-cEEEecCCC-CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---------
Confidence            47888887654            1 234555655 6889999999998887653   46899999975432         


Q ss_pred             ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe--EEEEEccCCCcccee
Q 010997          240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIK  317 (496)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~  317 (496)
                                                      ..+..+.+.+....|+|+|..++++.+.++.  |.+||+.++.   ..
T Consensus       239 --------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~  283 (435)
T PRK05137        239 --------------------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---TT  283 (435)
T ss_pred             --------------------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---eE
Confidence                                            2334455567788999999655667776665  6677887765   23


Q ss_pred             eeccCCCCeEEEEecCCCCcEEEEEcC-CC--cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997          318 VEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  394 (496)
Q Consensus       318 ~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d  394 (496)
                      .+..+........|+| ++..|+..+. +|  .|.++|+..       .....+..+...+....|+|+|+.|+.+....
T Consensus       284 ~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g-------~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~  355 (435)
T PRK05137        284 RLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG-------SNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG  355 (435)
T ss_pred             EccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC-------CCeEEeecCCCcccCeEECCCCCEEEEEEcCC
Confidence            3444555667899999 8888776653 33  577778764       33444544455677889999999765444333


Q ss_pred             --CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCC--CeEEEeecCCC
Q 010997          395 --GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG--GTLQIWRMSDL  470 (496)
Q Consensus       395 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~D--g~i~iw~~~~~  470 (496)
                        ..|.+||+....             ...+ . .+  ..+....|+|++..++.+....    +..  ..|.++++.. 
T Consensus       356 ~~~~i~~~d~~~~~-------------~~~l-t-~~--~~~~~p~~spDG~~i~~~~~~~----~~~~~~~L~~~dl~g-  413 (435)
T PRK05137        356 GQFSIGVMKPDGSG-------------ERIL-T-SG--FLVEGPTWAPNGRVIMFFRQTP----GSGGAPKLYTVDLTG-  413 (435)
T ss_pred             CceEEEEEECCCCc-------------eEec-c-CC--CCCCCCeECCCCCEEEEEEccC----CCCCcceEEEEECCC-
Confidence              357788875421             1111 1 12  2467889999998877665432    222  3677777762 


Q ss_pred             CcCCchHHHHHHHhccceEEEeccCC
Q 010997          471 IYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       471 ~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                           +. ...+. ..+.+...+|+|
T Consensus       414 -----~~-~~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        414 -----RN-EREVP-TPGDASDPAWSP  432 (435)
T ss_pred             -----Cc-eEEcc-CCCCccCcccCC
Confidence                 22 23333 234467778887

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=2e-13  Score=122.16  Aligned_cols=251  Identities=12%  Similarity=0.117  Sum_probs=176.4

Q ss_pred             CCceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          140 PGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       140 ~~~V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      ...|..++|.-+ ...++...+.+-.+..+.++........      .......+... .|.++...  ...|++|-.+|
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~------~~~~~~~l~~~-~I~gl~~~--dg~Litc~~sG  125 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL------DDAKTVSLGTK-SIKGLKLA--DGTLITCVSSG  125 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCcccccc------ccccccccccc-cccchhhc--CCEEEEEecCC
Confidence            345667777652 3345555556667777777665322111      00112222333 45555543  34688899999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .+.+|....+...                                    ..++..+..+ ..+..|.-++..+.++++|+
T Consensus       126 ~l~~~~~k~~d~h------------------------------------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GG  168 (412)
T KOG3881|consen  126 NLQVRHDKSGDLH------------------------------------SSKLIKLATG-PGLYDVRQTDTDPYIVATGG  168 (412)
T ss_pred             cEEEEeccCCccc------------------------------------cccceeeecC-CceeeeccCCCCCceEecCc
Confidence            9999998743211                                    1112233333 45677777888888889999


Q ss_pred             CC--CeEEEEEccCCCccceeeecc---------CCCCeEEEEecCCC--CcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997          299 DD--SCLILWDARVGTSPVIKVEKA---------HDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRNLTSNGVGSPI  365 (496)
Q Consensus       299 ~d--g~i~iwd~~~~~~~~~~~~~~---------~~~~v~~i~~sp~~--~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  365 (496)
                      ..  ..+.|||+...+  .+...+.         -.-.++.+.|-+ .  .+.||+++.-+.|++||.+..     .+|+
T Consensus       169 ke~~n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q-----RRPV  240 (412)
T KOG3881|consen  169 KENINELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ-----RRPV  240 (412)
T ss_pred             hhcccceeeeecccce--eeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCccc-----Ccce
Confidence            99  899999998874  2222111         123467888887 5  789999999999999999964     4889


Q ss_pred             eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-ecCCCCCcceEEecCCCCc
Q 010997          366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHWNASDPW  444 (496)
Q Consensus       366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~~p~~~~  444 (496)
                      ..|..-..+|+++...|.+.+| .+|..-+.+..||++..               .++.. +.|..+.|+++..+|..++
T Consensus       241 ~~fd~~E~~is~~~l~p~gn~I-y~gn~~g~l~~FD~r~~---------------kl~g~~~kg~tGsirsih~hp~~~~  304 (412)
T KOG3881|consen  241 AQFDFLENPISSTGLTPSGNFI-YTGNTKGQLAKFDLRGG---------------KLLGCGLKGITGSIRSIHCHPTHPV  304 (412)
T ss_pred             eEeccccCcceeeeecCCCcEE-EEecccchhheecccCc---------------eeeccccCCccCCcceEEEcCCCce
Confidence            9999889999999999999965 58988999999999985               33333 6788899999999997776


Q ss_pred             EEEEecCCCCCCCCCCeEEEeecC
Q 010997          445 TVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       445 l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ++        ++|-|..|||+|+.
T Consensus       305 la--------s~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  305 LA--------SCGLDRYVRIHDIK  320 (412)
T ss_pred             EE--------eeccceeEEEeecc
Confidence            54        66677999999998

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.61  E-value=3.7e-13  Score=119.66  Aligned_cols=235  Identities=11%  Similarity=0.186  Sum_probs=157.4

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC--Cc
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD--KS  219 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D--g~  219 (496)
                      .++.+.|.. +...|..|+.|| -++|..+....           ....  .-.+..|--+-|+  ..++|..+.+  +.
T Consensus         7 ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k-----------~~~~--~~~~~~IvEmLFS--SSLvaiV~~~qpr~   69 (391)
T KOG2110|consen    7 TINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEK-----------CFSK--DTEGVSIVEMLFS--SSLVAIVSIKQPRK   69 (391)
T ss_pred             ceeeeeecc-ceeEEEccCCCc-eeEEecCchHH-----------hhcc--cCCCeEEEEeecc--cceeEEEecCCCce
Confidence            455666665 778898999886 57887765521           0000  0111123233343  3445544433  35


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      +++.++......                                        ..+ ....+|.+|.++.+   .|+.+-.
T Consensus        70 Lkv~~~Kk~~~I----------------------------------------Ce~-~fpt~IL~VrmNr~---RLvV~Le  105 (391)
T KOG2110|consen   70 LKVVHFKKKTTI----------------------------------------CEI-FFPTSILAVRMNRK---RLVVCLE  105 (391)
T ss_pred             EEEEEcccCceE----------------------------------------EEE-ecCCceEEEEEccc---eEEEEEc
Confidence            788877643221                                        111 13457889999764   4666655


Q ss_pred             CCeEEEEEccCCCccceeeec---cCCCCeEEEEecCCCCcEEEEEc--CCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          300 DSCLILWDARVGTSPVIKVEK---AHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~i~~sp~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      +. |.|||++..+  .+.+..   .+...+.++++++ .+.++|--+  ..|.|.|||..+      .+++..+..|.++
T Consensus       106 e~-IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n------l~~v~~I~aH~~~  175 (391)
T KOG2110|consen  106 ES-IYIYDIKDMK--LLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN------LQPVNTINAHKGP  175 (391)
T ss_pred             cc-EEEEecccce--eehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc------ceeeeEEEecCCc
Confidence            44 9999999887  444332   4556677777776 566777643  358999999999      6889999999999


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCc-EEEEECCCCCcccCCCCCCCCCCCeeEEEecC--CCCCcceEEecCCCCcEEEEecC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      +.+++|+++|. +|||+++.|+ ||||.+..+               +.++.++.  -.-.|.+++|+|+..+|.++.+ 
T Consensus       176 lAalafs~~G~-llATASeKGTVIRVf~v~~G---------------~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~-  238 (391)
T KOG2110|consen  176 LAALAFSPDGT-LLATASEKGTVIRVFSVPEG---------------QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN-  238 (391)
T ss_pred             eeEEEECCCCC-EEEEeccCceEEEEEEcCCc---------------cEeeeeeCCceeeEEEEEEECCCCCeEEEecC-
Confidence            99999999998 6899999875 799999885               34444432  1236889999999887664433 


Q ss_pred             CCCCCCCCCeEEEeecCCCC
Q 010997          452 DCDSTGGGGTLQIWRMSDLI  471 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~~~~  471 (496)
                             -++|+||.+....
T Consensus       239 -------TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  239 -------TETVHIFKLEKVS  251 (391)
T ss_pred             -------CCeEEEEEecccc
Confidence                   3799999998553

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=2.1e-13  Score=134.03  Aligned_cols=243  Identities=11%  Similarity=0.067  Sum_probs=147.9

Q ss_pred             CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC---CcEEEEecCCccccccCCcccc
Q 010997          163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATA  239 (496)
Q Consensus       163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D---g~i~iwd~~~~~~~~~~~~~~~  239 (496)
                      ..|.++|....            . ...+..+.. .+.+.+|+|+|+.|+..+.+   ..|.+||+.++..         
T Consensus       176 ~~L~~~D~dG~------------~-~~~l~~~~~-~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---------  232 (427)
T PRK02889        176 YQLQISDADGQ------------N-AQSALSSPE-PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---------  232 (427)
T ss_pred             cEEEEECCCCC------------C-ceEeccCCC-CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---------
Confidence            46777776443            1 123334544 57899999999988876642   3599999976532         


Q ss_pred             ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeee
Q 010997          240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE  319 (496)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  319 (496)
                                                      ..+....+.+....|+|++..++++.+.+|...||.+..... ....+
T Consensus       233 --------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~-~~~~l  279 (427)
T PRK02889        233 --------------------------------RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS-GLRRL  279 (427)
T ss_pred             --------------------------------EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC-CcEEC
Confidence                                            122223344567899999965556778888877776543221 12333


Q ss_pred             ccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--c
Q 010997          320 KAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--L  396 (496)
Q Consensus       320 ~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~  396 (496)
                      ..+........|+| ++..|+..+ .+|...||.+....    + ....+..+.......+|+|+|++|+.++..++  .
T Consensus       280 t~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~----g-~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~  353 (427)
T PRK02889        280 TQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASG----G-AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFK  353 (427)
T ss_pred             CCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCC----C-ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEE
Confidence            34555567789999 888777554 35677777654311    2 22222222333456889999997654443333  6


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCch
Q 010997          397 LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD  476 (496)
Q Consensus       397 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~  476 (496)
                      |.+||+.....             ..+   .. ........|+|++..++.+..+.    | ...+.+-++.       +
T Consensus       354 I~v~d~~~g~~-------------~~l---t~-~~~~~~p~~spdg~~l~~~~~~~----g-~~~l~~~~~~-------g  404 (427)
T PRK02889        354 LYVQDLATGQV-------------TAL---TD-TTRDESPSFAPNGRYILYATQQG----G-RSVLAAVSSD-------G  404 (427)
T ss_pred             EEEEECCCCCe-------------EEc---cC-CCCccCceECCCCCEEEEEEecC----C-CEEEEEEECC-------C
Confidence            99999876311             111   11 12346789999998877765432    1 1234444443       4


Q ss_pred             HHHHHHHhccceEEEeccCC
Q 010997          477 EVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       477 ~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .....+..+.+.+...+|+|
T Consensus       405 ~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        405 RIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             CceEEeecCCCCCCCCccCC
Confidence            44455566777788889988

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.59  E-value=3.5e-14  Score=131.72  Aligned_cols=221  Identities=19%  Similarity=0.265  Sum_probs=151.3

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHIT  230 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~  230 (496)
                      .+--|..|-..|.|++.|....+... +..        .-..-....|+|+.|-|.+. .++.+-.+|.+.++|......
T Consensus       184 ~g~dllIGf~tGqvq~idp~~~~~sk-lfn--------e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~  254 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPINFEVSK-LFN--------EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG  254 (636)
T ss_pred             CCcceEEeeccCceEEecchhhHHHH-hhh--------hcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc
Confidence            45556677788899998876531110 000        00011112589999999754 666777899999998742110


Q ss_pred             cccCCccccccCCCCCceeccCCCCCCCCCCCCC-CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEcc
Q 010997          231 SSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD-GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR  309 (496)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  309 (496)
                        ...+.......+..           -.+..+. .....|+..+.--.+.|+..+|+||| .+||+.+.||.++|+|..
T Consensus       255 --~t~p~~~~~k~~~~-----------f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fd  320 (636)
T KOG2394|consen  255 --ATAPSYQALKDGDQ-----------FAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFD  320 (636)
T ss_pred             --CCCCcccccCCCCe-----------eEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeecc
Confidence              01110000000000           0000000 11124555555556789999999998 899999999999999998


Q ss_pred             CCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC------
Q 010997          310 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD------  383 (496)
Q Consensus       310 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~------  383 (496)
                      +..  +.-..+.--+...|++|+| |+.||++|+.|--|.||.+..      .+.+..-.+|++.|..|+|.|-      
T Consensus       321 t~e--Llg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~e------rRVVARGqGHkSWVs~VaFDpytt~~ee  391 (636)
T KOG2394|consen  321 TQE--LLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEE------RRVVARGQGHKSWVSVVAFDPYTTSTEE  391 (636)
T ss_pred             HHH--HHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEecc------ceEEEeccccccceeeEeeccccccccc
Confidence            876  4444445567899999999 999999999999999999998      7888888999999999999831      


Q ss_pred             -----------------------------------------CCCEEEEEeCCCcEEEEECCC
Q 010997          384 -----------------------------------------KSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       384 -----------------------------------------~~~llas~~~dg~i~iwd~~~  404 (496)
                                                               -.|-|.+.+.|-.+++||+..
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte  453 (636)
T KOG2394|consen  392 WNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE  453 (636)
T ss_pred             ccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecch
Confidence                                                     124578889999999999975

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.59  E-value=1.8e-13  Score=118.44  Aligned_cols=159  Identities=20%  Similarity=0.379  Sum_probs=110.5

Q ss_pred             eEEEEccCCCceEEEEcC---------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEE--EcCCCcEEE
Q 010997          282 EDVTFCPSSAQEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT--GSADNSVRM  350 (496)
Q Consensus       282 ~~l~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s--gs~dg~i~i  350 (496)
                      ..+.|+|.|..+++....         -+...||.++....+..........+|.+++|+| ++..||+  |..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence            467899999655555541         2456677775554333333333456799999999 7777654  446789999


Q ss_pred             EeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997          351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  427 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (496)
                      ||++.       ..+..+.  ...+..+.|+|+|++++ +++.   .|.|.+||++..               ..+... 
T Consensus        88 yd~~~-------~~i~~~~--~~~~n~i~wsP~G~~l~-~~g~~n~~G~l~~wd~~~~---------------~~i~~~-  141 (194)
T PF08662_consen   88 YDVKG-------KKIFSFG--TQPRNTISWSPDGRFLV-LAGFGNLNGDLEFWDVRKK---------------KKISTF-  141 (194)
T ss_pred             EcCcc-------cEeEeec--CCCceEEEECCCCCEEE-EEEccCCCcEEEEEECCCC---------------EEeecc-
Confidence            99973       6777774  56788999999999754 5543   467999999864               333322 


Q ss_pred             CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      .|. .++.++|+|+|++++.+++.-  .-..|+.++||++...
T Consensus       142 ~~~-~~t~~~WsPdGr~~~ta~t~~--r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  142 EHS-DATDVEWSPDGRYLATATTSP--RLRVDNGFKIWSFQGR  181 (194)
T ss_pred             ccC-cEEEEEEcCCCCEEEEEEecc--ceeccccEEEEEecCe
Confidence            233 478999999999988765531  2345799999999843

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=2.4e-13  Score=121.68  Aligned_cols=213  Identities=17%  Similarity=0.305  Sum_probs=156.3

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc-eEEecCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKD  217 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~-l~sg~~D  217 (496)
                      -.+.|-.++..  + ..|++|-.+|.+.+|....+...        ..+...+..+.+  +..+.-++..++ +++|+..
T Consensus       104 ~~~~I~gl~~~--d-g~Litc~~sG~l~~~~~k~~d~h--------ss~l~~la~g~g--~~~~r~~~~~p~Iva~GGke  170 (412)
T KOG3881|consen  104 GTKSIKGLKLA--D-GTLITCVSSGNLQVRHDKSGDLH--------SSKLIKLATGPG--LYDVRQTDTDPYIVATGGKE  170 (412)
T ss_pred             ccccccchhhc--C-CEEEEEecCCcEEEEeccCCccc--------cccceeeecCCc--eeeeccCCCCCceEecCchh
Confidence            34455555543  3 36778889999999999865211        234445555543  677887777665 4558888


Q ss_pred             --CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--CCce
Q 010997          218 --KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SAQE  293 (496)
Q Consensus       218 --g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~  293 (496)
                        ..+.+||+++....+......                             ...+..  .-.-.++++.|-+.  . +.
T Consensus       171 ~~n~lkiwdle~~~qiw~aKNvp-----------------------------nD~L~L--rVPvW~tdi~Fl~g~~~-~~  218 (412)
T KOG3881|consen  171 NINELKIWDLEQSKQIWSAKNVP-----------------------------NDRLGL--RVPVWITDIRFLEGSPN-YK  218 (412)
T ss_pred             cccceeeeecccceeeeeccCCC-----------------------------Cccccc--eeeeeeccceecCCCCC-ce
Confidence              899999998764332211100                             000000  01125678888776  4 68


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE-eccCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHS  372 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~  372 (496)
                      |++++.-+.+++||.+.++.|+. .+.-.+.+|+++...| +++++++|..-|.+..||+|.      +..+.. +.+-.
T Consensus       219 fat~T~~hqvR~YDt~~qRRPV~-~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~------~kl~g~~~kg~t  290 (412)
T KOG3881|consen  219 FATITRYHQVRLYDTRHQRRPVA-QFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRG------GKLLGCGLKGIT  290 (412)
T ss_pred             EEEEecceeEEEecCcccCccee-EeccccCcceeeeecC-CCcEEEEecccchhheecccC------ceeeccccCCcc
Confidence            99999999999999998886654 4456688999999999 999999999999999999998      555444 88899


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +.|.+|..+|.++ ++|++|-|+.|||+|+.+.
T Consensus       291 Gsirsih~hp~~~-~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  291 GSIRSIHCHPTHP-VLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             CCcceEEEcCCCc-eEEeeccceeEEEeecccc
Confidence            9999999999998 6789999999999999883

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=5e-12  Score=124.15  Aligned_cols=219  Identities=13%  Similarity=0.117  Sum_probs=137.3

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEe---CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHT---DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..+.+.+...+|+| +++.||..+   .+..|++|++.++..          +.+..+.++    +..+.|+|||+.|+.
T Consensus       195 t~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~----------~~l~~~~~~----~~~~~~SPDG~~La~  259 (429)
T PRK03629        195 HRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAV----------RQVASFPRH----NGAPAFSPDGSKLAF  259 (429)
T ss_pred             ecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCe----------EEccCCCCC----cCCeEECCCCCEEEE
Confidence            45667899999999 777776543   245799999977621          111222333    346899999997775


Q ss_pred             e-cCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          214 G-GKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       214 g-~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      . +.+|  .|.+||++++..                                         ..+..+...+....|+|++
T Consensus       260 ~~~~~g~~~I~~~d~~tg~~-----------------------------------------~~lt~~~~~~~~~~wSPDG  298 (429)
T PRK03629        260 ALSKTGSLNLYVMDLASGQI-----------------------------------------RQVTDGRSNNTEPTWFPDS  298 (429)
T ss_pred             EEcCCCCcEEEEEECCCCCE-----------------------------------------EEccCCCCCcCceEECCCC
Confidence            4 4455  588888875422                                         2222333456788999999


Q ss_pred             CceEEEEcCCCeEEEE--EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---CcEEEEeCCCCCCCCCCCCc
Q 010997          291 AQEFCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGSPI  365 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~~~  365 (496)
                      ..++++...++...||  |+..+.  . ..+...........|+| ++.+|+..+.+   ..|.+||+.+      +. .
T Consensus       299 ~~I~f~s~~~g~~~Iy~~d~~~g~--~-~~lt~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~------g~-~  367 (429)
T PRK03629        299 QNLAYTSDQAGRPQVYKVNINGGA--P-QRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLAT------GG-V  367 (429)
T ss_pred             CEEEEEeCCCCCceEEEEECCCCC--e-EEeecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCC------CC-e
Confidence            4444444444555555  555544  2 22223344556789999 88888776543   3588899876      32 3


Q ss_pred             eEeccCCCCEEEEEEcCCCCCEEEEEeCCCc---EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL---LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                      ..+.. ........|+|||..|+ .++.++.   +.++++...                ....+.+|.+.+...+|+|
T Consensus       368 ~~Lt~-~~~~~~p~~SpDG~~i~-~~s~~~~~~~l~~~~~~G~----------------~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        368 QVLTD-TFLDETPSIAPNGTMVI-YSSSQGMGSVLNLVSTDGR----------------FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             EEeCC-CCCCCCceECCCCCEEE-EEEcCCCceEEEEEECCCC----------------CeEECccCCCCcCCcccCC
Confidence            33432 12334678999999765 5555543   667777542                2334556778899999998

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=6.2e-12  Score=111.59  Aligned_cols=216  Identities=13%  Similarity=0.198  Sum_probs=137.3

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCC--CceEEecCCCCcceeeeecCCCCceEEecC-
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR--PDLILTGHQDNAEFALAMCPTEPYVLSGGK-  216 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-  216 (496)
                      +..|.|++|-|-....||.|+.. -|.||..+...+...........  .+....||  .+|++|.|++||..|++++. 
T Consensus       140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh--~pVtsmqwn~dgt~l~tAS~g  216 (445)
T KOG2139|consen  140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH--NPVTSMQWNEDGTILVTASFG  216 (445)
T ss_pred             hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC--ceeeEEEEcCCCCEEeecccC
Confidence            45799999999888888888875 69999887654332211111111  22334455  47999999999999998875 


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      |..|.|||.+++.....                                      .  ....+.++-+.|+|++ .+|++
T Consensus       217 sssi~iWdpdtg~~~pL--------------------------------------~--~~glgg~slLkwSPdg-d~lfa  255 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPL--------------------------------------I--PKGLGGFSLLKWSPDG-DVLFA  255 (445)
T ss_pred             cceEEEEcCCCCCcccc--------------------------------------c--ccCCCceeeEEEcCCC-CEEEE
Confidence            67999999987644211                                      1  1224568889999999 78888


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC---------CceE
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS---------PINK  367 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~---------~~~~  367 (496)
                      +.-|+..++|....... ...- .-..+.|...+|+| .|..|+.+.. |.-++|.+.-........         ++..
T Consensus       256 At~davfrlw~e~q~wt-~erw-~lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaD  331 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWT-KERW-ILGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD  331 (445)
T ss_pred             ecccceeeeehhcccce-ecce-eccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeecc
Confidence            99999999996544331 1111 12345899999999 7766554432 334455443322111011         0111


Q ss_pred             e-----cc----CCCCEEEEEEcCCCCCEEEEEeCC--------CcEEEEECCC
Q 010997          368 F-----EG----HSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEK  404 (496)
Q Consensus       368 ~-----~~----h~~~i~~l~~sp~~~~llas~~~d--------g~i~iwd~~~  404 (496)
                      +     ..    -.+.+.+++|.|.|.++ |+.-..        ..|.+||.+.
T Consensus       332 L~e~ti~ag~~l~cgeaq~lawDpsGeyL-av~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  332 LQEVTICAGQRLCCGEAQCLAWDPSGEYL-AVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             chhhhhhcCcccccCccceeeECCCCCEE-EEEEcCCchhhhhhhhhhhhcccc
Confidence            1     01    14678999999999985 444322        3466788776

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.54  E-value=5.9e-13  Score=117.22  Aligned_cols=289  Identities=15%  Similarity=0.239  Sum_probs=178.4

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC-----------CcceeeeecCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------NAEFALAMCPT  207 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~-----------~~v~~l~~~p~  207 (496)
                      -.+-|.+|.|.. .|.+||||..+|.|.+|.-+.....       ..+....++.|..           ..|..+.|.++
T Consensus        24 eadiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~-------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~   95 (433)
T KOG1354|consen   24 EADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKG-------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD   95 (433)
T ss_pred             hhcceeeEEeec-ccceEeecCCCCeEEEeeccccccc-------ceeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence            345688999988 8999999999999999987654320       1122334444432           24788999988


Q ss_pred             CC--ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC------CCCcCCeeee-ecCC
Q 010997          208 EP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD------GPSVGPRGIY-NGHE  278 (496)
Q Consensus       208 ~~--~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~h~  278 (496)
                      ++  .++....|++|++|.+................           +.......++..      .....+.+.+ ..|.
T Consensus        96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~-----------~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEG-----------PPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             CCccEEEEecCCcceeeeeeeccccccccccccccC-----------CCCccceeeceeeccccceeeeeeeeeccccce
Confidence            65  56666779999999987543322100000000           000000000000      0112233343 4688


Q ss_pred             CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc-ceeeeccC-----CCCeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAH-----DADLHCVDWNPLDDNLILTGSADNSVRMFD  352 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~-----~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd  352 (496)
                      --|+++.++.+. ..+++ .+|=.|.+|++.-.... .+...+.+     ..-|++..|+|...++|+-.++.|+|+|-|
T Consensus       165 yhiNSIS~NsD~-Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  165 YHINSISVNSDK-ETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             eEeeeeeecCcc-ceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence            899999999988 44554 47889999998754421 11122222     356889999998889999999999999999


Q ss_pred             CCCCCCC----------CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCee
Q 010997          353 RRNLTSN----------GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  422 (496)
Q Consensus       353 ~~~~~~~----------~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  422 (496)
                      +|...--          ..+....-|..--..|..+.|+++|+++| +-+ --+|++||+....++.           ..
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil-sRD-yltvk~wD~nme~~pv-----------~t  309 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL-SRD-YLTVKLWDLNMEAKPV-----------ET  309 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE-Eec-cceeEEEeccccCCcc-----------eE
Confidence            9952100          00111111223345789999999999765 443 4689999997643221           11


Q ss_pred             EEEecC---------CCCCc---ceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          423 FFQHAG---------HRDKV---VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       423 ~~~~~~---------h~~~V---~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      ...|.-         -.+.|   ..++|+.++.+++        |||..+.++++++..
T Consensus       310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~--------TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVM--------TGSYNNVFRVFNLAR  360 (433)
T ss_pred             EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEe--------cccccceEEEecCCC
Confidence            111110         01223   3488998877766        888889999999654

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.54  E-value=6.7e-15  Score=134.09  Aligned_cols=193  Identities=16%  Similarity=0.264  Sum_probs=158.9

Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  278 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  278 (496)
                      -+.+.++.+|++|+.|+.-|.|..+|..+.......                                         .-.
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei-----------------------------------------~v~  170 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI-----------------------------------------NVM  170 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeee-----------------------------------------ehh
Confidence            378999999999999999999999999875432111                                         123


Q ss_pred             CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      ..|.++.|-... ++||+ .....+.|||-...+   +..+.. ...|..+.|-| ...+|++++..|.++.-|+..   
T Consensus       171 Etv~Dv~~LHne-q~~AV-AQK~y~yvYD~~GtE---lHClk~-~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~---  240 (545)
T KOG1272|consen  171 ETVRDVTFLHNE-QFFAV-AQKKYVYVYDNNGTE---LHCLKR-HIRVARLEFLP-YHFLLVAASEAGFLKYQDVST---  240 (545)
T ss_pred             hhhhhhhhhcch-HHHHh-hhhceEEEecCCCcE---Eeehhh-cCchhhhcccc-hhheeeecccCCceEEEeech---
Confidence            568899997766 55554 567899999965443   444433 36799999999 788999999999999999999   


Q ss_pred             CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997          359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  438 (496)
Q Consensus       359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  438 (496)
                         +..+..+..-.+.+..++-+|-+. ++-+|...|+|.+|.-...               +.+..+-.|.++|.++++
T Consensus       241 ---GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~sk---------------ePLvKiLcH~g~V~siAv  301 (545)
T KOG1272|consen  241 ---GKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSK---------------EPLVKILCHRGPVSSIAV  301 (545)
T ss_pred             ---hhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCc---------------chHHHHHhcCCCcceEEE
Confidence               899999998899999999999887 7789999999999998774               445556789999999999


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .++|.+++        |.|.|..++|||++.
T Consensus       302 ~~~G~YMa--------TtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  302 DRGGRYMA--------TTGLDRKVKIWDLRN  324 (545)
T ss_pred             CCCCcEEe--------ecccccceeEeeecc
Confidence            99999887        888889999999995

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=2.7e-12  Score=126.58  Aligned_cols=221  Identities=12%  Similarity=0.125  Sum_probs=137.5

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      +..|...+...+|+| +++.||..+.+   ..|++||+.++.            . ..+..+.. ...+..|+|+|+.|+
T Consensus       199 lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~------------~-~~l~~~~g-~~~~~~~SpDG~~l~  263 (433)
T PRK04922        199 ILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQ------------R-ELVASFRG-INGAPSFSPDGRRLA  263 (433)
T ss_pred             eecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCC------------E-EEeccCCC-CccCceECCCCCEEE
Confidence            446777899999999 77777776643   469999997762            1 12222322 345789999998765


Q ss_pred             -EecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          213 -SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       213 -sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                       +.+.+|  .|.+||+.++..                                         ..+..+.......+|+|+
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~~-----------------------------------------~~lt~~~~~~~~~~~spD  302 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQL-----------------------------------------TRLTNHFGIDTEPTWAPD  302 (433)
T ss_pred             EEEeCCCCceEEEEECCCCCe-----------------------------------------EECccCCCCccceEECCC
Confidence             555555  588888875432                                         223334444567899999


Q ss_pred             CCceEEEEcCCCe--EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCCC
Q 010997          290 SAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSP  364 (496)
Q Consensus       290 ~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~  364 (496)
                      +..++++...+|.  |.++|+.++.  .. .+..+.......+|+| ++.+|+..+.++   .|.+||+.+      +. 
T Consensus       303 G~~l~f~sd~~g~~~iy~~dl~~g~--~~-~lt~~g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~------g~-  371 (433)
T PRK04922        303 GKSIYFTSDRGGRPQIYRVAASGGS--AE-RLTFQGNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLST------GS-  371 (433)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCC--eE-EeecCCCCccCEEECC-CCCEEEEEECCCCceeEEEEECCC------CC-
Confidence            9444444445555  5556665554  22 2212333455789999 888887765443   699999876      33 


Q ss_pred             ceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                      ...+. +........|+|+|+.++.+....+  .|.++++...                ....+..+.+.+...+|+|
T Consensus       372 ~~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----------------~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        372 VRTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----------------VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             eEECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----------------ceEEcccCCCCCCCCccCC
Confidence            23343 2234456799999997665554433  4666776542                1222334455677888887

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.53  E-value=9.3e-14  Score=133.47  Aligned_cols=279  Identities=20%  Similarity=0.375  Sum_probs=194.9

Q ss_pred             ccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997          130 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  209 (496)
Q Consensus       130 ~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~  209 (496)
                      .+-..-.+.-.+.++++..+| .++-+|.++.-| +.+-|+...-           .+..-+..-+...|-.+.|+|...
T Consensus        14 tf~kslsl~v~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~-----------~ppr~l~h~tpw~vad~qws~h~a   80 (1081)
T KOG0309|consen   14 TFGKSLSLKVDGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPF-----------TPPRWLHHITPWQVADVQWSPHPA   80 (1081)
T ss_pred             ccCceeEEEecCcccceeecc-ccchhhhhhhcC-eEEEeccCCC-----------CCceeeeccCcchhcceecccCCC
Confidence            333334455677899999999 677777877765 5666776552           233333333333456778887633


Q ss_pred             ---ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997          210 ---YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       210 ---~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  286 (496)
                         .+++-+ ...-.+|++....                                     ....-..+.+|...|+++-|
T Consensus        81 ~~~wiVsts-~qkaiiwnlA~ss-------------------------------------~~aIef~lhghsraitd~n~  122 (1081)
T KOG0309|consen   81 KPYWIVSTS-NQKAIIWNLAKSS-------------------------------------SNAIEFVLHGHSRAITDINF  122 (1081)
T ss_pred             CceeEEecC-cchhhhhhhhcCC-------------------------------------ccceEEEEecCccceecccc
Confidence               455544 4455688876321                                     11122567899999999999


Q ss_pred             ccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  366 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  366 (496)
                      +|+.+.++++++.|..++.||+|+...+... ..........|+|+-.+++.+|+ +....|++||++..     +.++.
T Consensus       123 ~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys-~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~g-----s~pl~  195 (1081)
T KOG0309|consen  123 NPQHPDVLATCSVDTYVHAWDMRSPHRPFYS-TSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKG-----STPLC  195 (1081)
T ss_pred             CCCCCcceeeccccccceeeeccCCCcceee-eecccccCceeeecccCcchhhh-ccCCceEEEeccCC-----CcceE
Confidence            9999999999999999999999998865443 34556677889999866666665 45667999999984     47899


Q ss_pred             EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCC--------------------------------
Q 010997          367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR--------------------------------  414 (496)
Q Consensus       367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~--------------------------------  414 (496)
                      .+++|...|+.++|..-....+.+++.||+|++||..+...+......                                
T Consensus       196 s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~  275 (1081)
T KOG0309|consen  196 SLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLR  275 (1081)
T ss_pred             EecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeecc
Confidence            999999999999998754445569999999999998764332111100                                


Q ss_pred             ---C-----CCCCCeeEEEecCCCCCcceEEecCCCC---------cEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997          415 ---T-----TNYPAGLFFQHAGHRDKVVDFHWNASDP---------WTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  473 (496)
Q Consensus       415 ---~-----~~~~~~~~~~~~~h~~~V~~~~~~p~~~---------~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~  473 (496)
                         .     .......+..+.||.+.|..+.|-..+.         +-++       |-+.|.++++|-+.+.+++
T Consensus       276 c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLV-------TWSkD~~lrlWpI~~~i~~  344 (1081)
T KOG0309|consen  276 CENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLV-------TWSKDQTLRLWPIDSQIQR  344 (1081)
T ss_pred             ccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEE-------EeecCCceEeeeccHHHHH
Confidence               0     0113446778899999999999865433         4455       5556699999999865543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.4e-11  Score=121.66  Aligned_cols=202  Identities=15%  Similarity=0.141  Sum_probs=130.4

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      ....|.+.|.+.+|+| +++.||..+.   +..|++||+.++.            . ..+..+.+ .+.+.+|+|+|+.|
T Consensus       196 ~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~------------~-~~l~~~~g-~~~~~~~SPDG~~l  260 (435)
T PRK05137        196 YLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQ------------R-ELVGNFPG-MTFAPRFSPDGRKV  260 (435)
T ss_pred             EEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCc------------E-EEeecCCC-cccCcEECCCCCEE
Confidence            3456788999999999 7777776653   4689999998762            1 22334444 46788999999876


Q ss_pred             E-EecCCCc--EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          212 L-SGGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       212 ~-sg~~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      + +.+.++.  |.+||+.++..                                         ..+..+........|+|
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~-----------------------------------------~~Lt~~~~~~~~~~~sp  299 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTT-----------------------------------------TRLTDSPAIDTSPSYSP  299 (435)
T ss_pred             EEEEecCCCceEEEEECCCCce-----------------------------------------EEccCCCCccCceeEcC
Confidence            5 6666665  66667654321                                         22334444566789999


Q ss_pred             CCCceEEEEcCCC--eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---CcEEEEeCCCCCCCCCCC
Q 010997          289 SSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       289 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~  363 (496)
                      ++..++++...+|  .|.++|+..+.   ...+..+...+....|+| ++..|+..+.+   ..|.+||+..       .
T Consensus       300 DG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~-------~  368 (435)
T PRK05137        300 DGSQIVFESDRSGSPQLYVMNADGSN---PRRISFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDG-------S  368 (435)
T ss_pred             CCCEEEEEECCCCCCeEEEEECCCCC---eEEeecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCC-------C
Confidence            9944444433444  57788876655   222223345567789999 88888776543   3678888754       2


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCC-----cEEEEECCC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK  404 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg-----~i~iwd~~~  404 (496)
                      ....+. ....+..+.|+|+|+.|+.++...+     .+.++|+..
T Consensus       369 ~~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        369 GERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             ceEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            233333 2335678899999997665554332     577777755

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.4e-13  Score=126.29  Aligned_cols=229  Identities=16%  Similarity=0.211  Sum_probs=167.9

Q ss_pred             CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997          186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  265 (496)
Q Consensus       186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (496)
                      .....|.+|.+ .|..+.|+..|..|+||+.|..|.+||.........                                
T Consensus       133 ~l~~kL~~H~G-cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--------------------------------  179 (559)
T KOG1334|consen  133 RLQKKLNKHKG-CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--------------------------------  179 (559)
T ss_pred             hhhhcccCCCC-ccceeeecccCceeeccCccceEEeehhhccCcccc--------------------------------
Confidence            34456888988 799999999999999999999999999976543221                                


Q ss_pred             CCcCCeeeeecCCCceeEEEEccCC-CceEEEEcCCCeEEEEEccCCCc-cceeeeccCCCCeEEEEecCCCCcEEEEEc
Q 010997          266 PSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGS  343 (496)
Q Consensus       266 ~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs  343 (496)
                             -..+|...|....|-|.. ...+++++.||.+++=.+..... .....+..|.++|+-++..|.+..-|.+++
T Consensus       180 -------f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~g  252 (559)
T KOG1334|consen  180 -------FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCG  252 (559)
T ss_pred             -------cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccc
Confidence                   224677778777888753 35799999999999877654432 223455689999999999998889999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCceEeccCCC---CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCC
Q 010997          344 ADNSVRMFDRRNLTSNGVGSPINKFEGHSA---AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  420 (496)
Q Consensus       344 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~---~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  420 (496)
                      .|+.+.-+|+++....   ..+..-..+..   ....++..|...+.||+++.|-.+++||.+...+...........|.
T Consensus       253 eD~~v~~~Dlr~~~pa---~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~  329 (559)
T KOG1334|consen  253 EDAVVFHIDLRQDVPA---EKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH  329 (559)
T ss_pred             cccceeeeeeccCCcc---ceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc
Confidence            9999999999983211   11112223333   57889999999989999999999999999886443222111222233


Q ss_pred             eeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       421 ~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .++.   ...-.|++++++.++.-++||.++.        .|+++...
T Consensus       330 hl~~---d~~v~ITgl~Ysh~~sElLaSYnDe--------~IYLF~~~  366 (559)
T KOG1334|consen  330 HLVE---DDPVNITGLVYSHDGSELLASYNDE--------DIYLFNKS  366 (559)
T ss_pred             cccc---cCcccceeEEecCCccceeeeeccc--------ceEEeccc
Confidence            3332   2233689999998888899988865        78888554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.52  E-value=2.4e-11  Score=108.33  Aligned_cols=196  Identities=15%  Similarity=0.210  Sum_probs=139.5

Q ss_pred             eeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997          143 VNRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  220 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i  220 (496)
                      |--+-|+.   .++|..+.+.  .+++.++...            ..+..+.-.+  .|.++.++  .++|+.+-.+ .|
T Consensus        49 IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~------------~~ICe~~fpt--~IL~VrmN--r~RLvV~Lee-~I  108 (391)
T KOG2110|consen   49 IVEMLFSS---SLVAIVSIKQPRKLKVVHFKKK------------TTICEIFFPT--SILAVRMN--RKRLVVCLEE-SI  108 (391)
T ss_pred             EEEeeccc---ceeEEEecCCCceEEEEEcccC------------ceEEEEecCC--ceEEEEEc--cceEEEEEcc-cE
Confidence            44445654   4666555543  4888888766            2333333333  47888885  3567777655 49


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE--c
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV--G  298 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~--~  298 (496)
                      .|+|+++.+.....                                     .....+...+.++.+++.+ .+++--  .
T Consensus       109 yIydI~~MklLhTI-------------------------------------~t~~~n~~gl~AlS~n~~n-~ylAyp~s~  150 (391)
T KOG2110|consen  109 YIYDIKDMKLLHTI-------------------------------------ETTPPNPKGLCALSPNNAN-CYLAYPGST  150 (391)
T ss_pred             EEEecccceeehhh-------------------------------------hccCCCccceEeeccCCCC-ceEEecCCC
Confidence            99999865432111                                     1122344556666666665 455542  3


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc-EEEEeCCCCCCCCCCCCceEeccC--CCCE
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGH--SAAV  375 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~i  375 (496)
                      ..|.|.|||..+-+  ....+.+|.+.+-|++|++ +|.+|||+|..|+ ||+|.+.+      +..+.+|+--  ...|
T Consensus       151 t~GdV~l~d~~nl~--~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~------G~kl~eFRRG~~~~~I  221 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQ--PVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPE------GQKLYEFRRGTYPVSI  221 (391)
T ss_pred             CCceEEEEEcccce--eeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCC------ccEeeeeeCCceeeEE
Confidence            46899999998877  5666779999999999999 9999999999995 78999988      8888888643  3468


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010997          376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  406 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~  406 (496)
                      .+++|+|++++ |++.+..++|+||.+....
T Consensus       222 ySL~Fs~ds~~-L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  222 YSLSFSPDSQF-LAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEECCCCCe-EEEecCCCeEEEEEecccc
Confidence            99999999995 6777788999999998743

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=3.9e-12  Score=125.02  Aligned_cols=228  Identities=10%  Similarity=0.115  Sum_probs=139.3

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      ...+.+.+.+.+|+| +++.||..+.+   ..|++||+.++.            .. .+....+ .+.+.+|+|||+.|+
T Consensus       191 l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~------------~~-~l~~~~g-~~~~~~~SPDG~~la  255 (427)
T PRK02889        191 ALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGR------------RR-VVANFKG-SNSAPAWSPDGRTLA  255 (427)
T ss_pred             eccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCC------------EE-EeecCCC-CccceEECCCCCEEE
Confidence            346778899999999 77777766542   369999998772            11 2222222 346889999998776


Q ss_pred             -EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          213 -SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       213 -sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                       +.+.+|...||.++...                                       .....+..+........|+|+|.
T Consensus       256 ~~~~~~g~~~Iy~~d~~~---------------------------------------~~~~~lt~~~~~~~~~~wSpDG~  296 (427)
T PRK02889        256 VALSRDGNSQIYTVNADG---------------------------------------SGLRRLTQSSGIDTEPFFSPDGR  296 (427)
T ss_pred             EEEccCCCceEEEEECCC---------------------------------------CCcEECCCCCCCCcCeEEcCCCC
Confidence             56788888888764210                                       00123333444556778999995


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCCCceEe
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      .+++++..+|...||.+......... ...........+|+| ++++|+..+.++   .|.+||+..      +. ...+
T Consensus       297 ~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~------g~-~~~l  367 (427)
T PRK02889        297 SIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLAT------GQ-VTAL  367 (427)
T ss_pred             EEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECC-CCCEEEEEEccCCcEEEEEEECCC------CC-eEEc
Confidence            44445445567777766432211111 112223344678999 899888776654   699999986      33 3333


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      ... .......|+|+++.|+.+....|.-.++-+...+              .....+..+.+.+...+|+|-
T Consensus       368 t~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g--------------~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        368 TDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG--------------RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             cCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC--------------CceEEeecCCCCCCCCccCCC
Confidence            322 3346789999999877666555553344332211              112223345567788889873

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.51  E-value=1.3e-12  Score=112.98  Aligned_cols=114  Identities=22%  Similarity=0.465  Sum_probs=85.8

Q ss_pred             CCCceeEEEEccCCCceEEE-EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC---CCcEEEEe
Q 010997          277 HEDTVEDVTFCPSSAQEFCS-VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFD  352 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~---dg~i~iwd  352 (496)
                      ..++|.+++|+|++..++++ |..++.|.+||++ .+  .+..+  +...++.|.|+| +|++|++|+.   .|.|.+||
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~--~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GK--KIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-cc--EeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEE
Confidence            34579999999999443333 4467899999997 22  34443  457889999999 8999999874   46799999


Q ss_pred             CCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC-----CCcEEEEECCC
Q 010997          353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGLLNIWDYEK  404 (496)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~-----dg~i~iwd~~~  404 (496)
                      .++      ...+.++. | ..++.++|+|+|++++.+.+.     |+.++||++..
T Consensus       132 ~~~------~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  132 VRK------KKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCC------CEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            997      56666654 3 347899999999986644443     88899999864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.47  E-value=9.1e-11  Score=102.69  Aligned_cols=176  Identities=20%  Similarity=0.364  Sum_probs=123.7

Q ss_pred             cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCC
Q 010997          164 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAG  243 (496)
Q Consensus       164 ~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  243 (496)
                      .|.|||=...            +++.++.--.  +|.++.+.++  .|+..- .+.|.||...+...             
T Consensus        76 kviIWDD~k~------------~~i~el~f~~--~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k-------------  125 (346)
T KOG2111|consen   76 KVIIWDDLKE------------RCIIELSFNS--EIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPK-------------  125 (346)
T ss_pred             eEEEEecccC------------cEEEEEEecc--ceeeEEEcCC--eEEEEe-cCeEEEEEcCCChh-------------
Confidence            7999994333            5555665544  5889999765  455554 67999999864211             


Q ss_pred             CCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC--CceeEEEEccCCC-ceEEE-EcCCCeEEEEEccCCCccceeee
Q 010997          244 SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE--DTVEDVTFCPSSA-QEFCS-VGDDSCLILWDARVGTSPVIKVE  319 (496)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~-~~l~s-~~~dg~i~iwd~~~~~~~~~~~~  319 (496)
                                                .++.+....  ....  +.+|... .+|+. |-.-|.|+|-|+...........
T Consensus       126 --------------------------~l~~~et~~NPkGlC--~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I  177 (346)
T KOG2111|consen  126 --------------------------LLHVIETRSNPKGLC--SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII  177 (346)
T ss_pred             --------------------------heeeeecccCCCceE--eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE
Confidence                                      111111111  1122  2222221 23332 34568999999988763223556


Q ss_pred             ccCCCCeEEEEecCCCCcEEEEEcCCCc-EEEEeCCCCCCCCCCCCceEecc--CCCCEEEEEEcCCCCCEEEEEeCCCc
Q 010997          320 KAHDADLHCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDGL  396 (496)
Q Consensus       320 ~~~~~~v~~i~~sp~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~--h~~~i~~l~~sp~~~~llas~~~dg~  396 (496)
                      .+|.+.|.|++++- +|.++||+|..|+ |||||..+      +.++.+++-  ....|.+++|||+..+ ||++|+-|+
T Consensus       178 ~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~------g~~l~E~RRG~d~A~iy~iaFSp~~s~-LavsSdKgT  249 (346)
T KOG2111|consen  178 NAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTED------GTLLQELRRGVDRADIYCIAFSPNSSW-LAVSSDKGT  249 (346)
T ss_pred             EcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCC------CcEeeeeecCCchheEEEEEeCCCccE-EEEEcCCCe
Confidence            79999999999999 9999999999996 79999999      888888863  3457999999999995 689999999


Q ss_pred             EEEEECCCC
Q 010997          397 LNIWDYEKV  405 (496)
Q Consensus       397 i~iwd~~~~  405 (496)
                      |+||.++..
T Consensus       250 lHiF~l~~~  258 (346)
T KOG2111|consen  250 LHIFSLRDT  258 (346)
T ss_pred             EEEEEeecC
Confidence            999999874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.47  E-value=2e-11  Score=120.67  Aligned_cols=237  Identities=12%  Similarity=0.136  Sum_probs=146.7

Q ss_pred             CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC---CcEEEEecCCccccccCCcccc
Q 010997          163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATA  239 (496)
Q Consensus       163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D---g~i~iwd~~~~~~~~~~~~~~~  239 (496)
                      ..|.++|....            . ...+..+.. .+...+|+|+|++|+.++.+   ..|.+||+.++..         
T Consensus       170 ~~l~~~d~~g~------------~-~~~l~~~~~-~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------  226 (417)
T TIGR02800       170 YELQVADYDGA------------N-PQTITRSRE-PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------  226 (417)
T ss_pred             ceEEEEcCCCC------------C-CEEeecCCC-ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---------
Confidence            36788887543            1 123444444 47889999999988876643   4799999875422         


Q ss_pred             ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC--eEEEEEccCCCcccee
Q 010997          240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIK  317 (496)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~  317 (496)
                                                      ..+..+...+.+++|+|++..++++.+.++  .|.+||+.++.   ..
T Consensus       227 --------------------------------~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~---~~  271 (417)
T TIGR02800       227 --------------------------------EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ---LT  271 (417)
T ss_pred             --------------------------------EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC---EE
Confidence                                            222334455667899999955556666555  58888887765   22


Q ss_pred             eeccCCCCeEEEEecCCCCcEEEEEcC-CC--cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997          318 VEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  394 (496)
Q Consensus       318 ~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d  394 (496)
                      .+..+........|+| ++..|+..+. ++  .|.++|+..      + ....+..+...+..+.|+|++..++ .++.+
T Consensus       272 ~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~------~-~~~~l~~~~~~~~~~~~spdg~~i~-~~~~~  342 (417)
T TIGR02800       272 RLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADG------G-EVRRLTFRGGYNASPSWSPDGDLIA-FVHRE  342 (417)
T ss_pred             ECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCC------C-CEEEeecCCCCccCeEECCCCCEEE-EEEcc
Confidence            3334444455779999 8887766544 34  577777765      2 2344554566678899999999765 44444


Q ss_pred             C---cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCC
Q 010997          395 G---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  471 (496)
Q Consensus       395 g---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~  471 (496)
                      +   .|.+||+... ..            ..+   ... .......|+|++..++++...+     ....+.+.+..   
T Consensus       343 ~~~~~i~~~d~~~~-~~------------~~l---~~~-~~~~~p~~spdg~~l~~~~~~~-----~~~~l~~~~~~---  397 (417)
T TIGR02800       343 GGGFNIAVMDLDGG-GE------------RVL---TDT-GLDESPSFAPNGRMILYATTRG-----GRGVLGLVSTD---  397 (417)
T ss_pred             CCceEEEEEeCCCC-Ce------------EEc---cCC-CCCCCceECCCCCEEEEEEeCC-----CcEEEEEEECC---
Confidence            4   6888888762 11            111   111 1234568999998877665543     11356666654   


Q ss_pred             cCCchHHHHHHHhccceEEEeccC
Q 010997          472 YRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       472 ~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                          +.....+..+.+.+...+|+
T Consensus       398 ----g~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       398 ----GRFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             ----CceeeECCCCCCCcCCCCCC
Confidence                33334455455667777764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.7e-11  Score=120.91  Aligned_cols=238  Identities=14%  Similarity=0.149  Sum_probs=141.4

Q ss_pred             cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC-CC--cEEEEecCCccccccCCccccc
Q 010997          164 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DK--SVVLWSIQDHITSSATDPATAK  240 (496)
Q Consensus       164 ~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-Dg--~i~iwd~~~~~~~~~~~~~~~~  240 (496)
                      .|.++|....            .. ..+..+.. .+.+..|+|||++|+..+. ++  .|.+||+.++..          
T Consensus       199 ~l~i~d~dG~------------~~-~~l~~~~~-~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~----------  254 (448)
T PRK04792        199 QLMIADYDGY------------NE-QMLLRSPE-PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR----------  254 (448)
T ss_pred             EEEEEeCCCC------------Cc-eEeecCCC-cccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe----------
Confidence            6677776554            11 12333333 5788999999998876543 33  578888765422          


Q ss_pred             cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe--EEEEEccCCCccceee
Q 010997          241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKV  318 (496)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~  318 (496)
                                                     ..+....+......|+|++..++++.+.+|.  |.++|+.++.   ...
T Consensus       255 -------------------------------~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~  300 (448)
T PRK04792        255 -------------------------------EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTR  300 (448)
T ss_pred             -------------------------------EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEE
Confidence                                           1111112233467999999655566667775  7777887665   233


Q ss_pred             eccCCCCeEEEEecCCCCcEEEEEc-CCCc--EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997          319 EKAHDADLHCVDWNPLDDNLILTGS-ADNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  395 (496)
Q Consensus       319 ~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg  395 (496)
                      +..+.......+|+| ++..|+..+ .++.  |.++|+..      +. ...+..........+|+|+|++++.+...++
T Consensus       301 lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~------g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g  372 (448)
T PRK04792        301 ITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLAS------GK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTNG  372 (448)
T ss_pred             CccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC------CC-EEEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence            334555667889999 777666544 3444  55666665      33 2333222233446799999998766655555


Q ss_pred             cEEE--EECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997          396 LLNI--WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  473 (496)
Q Consensus       396 ~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~  473 (496)
                      ...|  +|+.....             ..+   ... .......|+|++..++.+...+     ....+.+++..     
T Consensus       373 ~~~I~~~dl~~g~~-------------~~l---t~~-~~d~~ps~spdG~~I~~~~~~~-----g~~~l~~~~~~-----  425 (448)
T PRK04792        373 KFNIARQDLETGAM-------------QVL---TST-RLDESPSVAPNGTMVIYSTTYQ-----GKQVLAAVSID-----  425 (448)
T ss_pred             ceEEEEEECCCCCe-------------EEc---cCC-CCCCCceECCCCCEEEEEEecC-----CceEEEEEECC-----
Confidence            4444  56655211             111   111 1123457999999887766543     12346666664     


Q ss_pred             CchHHHHHHHhccceEEEeccCC
Q 010997          474 PQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       474 ~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                        +.....+..+.+.+...+|+|
T Consensus       426 --G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        426 --GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             --CCceEECcCCCCCcCCCccCC
Confidence              445555666667788889988

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.47  E-value=5e-12  Score=128.34  Aligned_cols=225  Identities=16%  Similarity=0.212  Sum_probs=150.6

Q ss_pred             CCceEEecCCCCcceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997          186 RPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  264 (496)
Q Consensus       186 ~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (496)
                      ..+..+..|.. .|..++.++.. .+|+|||.||+|++|+...-...                                 
T Consensus      1039 ~lVAhL~Ehs~-~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~--------------------------------- 1084 (1431)
T KOG1240|consen 1039 ILVAHLHEHSS-AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE--------------------------------- 1084 (1431)
T ss_pred             eEeehhhhccc-cccceeecCCCCceEEEecCCceEEEeeehhhhcC---------------------------------
Confidence            34455666776 46677777664 89999999999999998753221                                 


Q ss_pred             CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc-----eeeecc--CCCCeEEEEecCCCCc
Q 010997          265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVEKA--HDADLHCVDWNPLDDN  337 (496)
Q Consensus       265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~--~~~~v~~i~~sp~~~~  337 (496)
                      ........++......+.++.+.+.+ +.+|.++.||.|++.++.......     ......  ...-|..-+|....+.
T Consensus      1085 ~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1085 GGSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred             cceeeeeEEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccc
Confidence            01122234455456788999999888 789999999999999987632111     111111  1223333445443444


Q ss_pred             -EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCC
Q 010997          338 -LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  416 (496)
Q Consensus       338 -~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~  416 (496)
                       .++.+..-+.|..||+++..    ..-..+.....+.|++++.+|.+.+ ++.|...|.+.+||++-. .         
T Consensus      1164 ~~lvy~T~~~~iv~~D~r~~~----~~w~lk~~~~hG~vTSi~idp~~~W-lviGts~G~l~lWDLRF~-~--------- 1228 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMRH----DAWRLKNQLRHGLVTSIVIDPWCNW-LVIGTSRGQLVLWDLRFR-V--------- 1228 (1431)
T ss_pred             eeEEEEEeccceEEecchhhh----hHHhhhcCccccceeEEEecCCceE-EEEecCCceEEEEEeecC-c---------
Confidence             78889999999999999843    1122233445688999999999996 579999999999999984 1         


Q ss_pred             CCCCeeEEEecCCCCCcceEEecCCCC--cEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          417 NYPAGLFFQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       417 ~~~~~~~~~~~~h~~~V~~~~~~p~~~--~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                         +..-. ..++..+|+.+..+|..+  ...++++.     +..+.|.+|++..
T Consensus      1229 ---~i~sw-~~P~~~~i~~v~~~~~~~~~S~~vs~~~-----~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1229 ---PILSW-EHPARAPIRHVWLCPTYPQESVSVSAGS-----SSNNEVSTWNMET 1274 (1431)
T ss_pred             ---eeecc-cCcccCCcceEEeeccCCCCceEEEecc-----cCCCceeeeeccc
Confidence               11112 234456788888887655  44444322     1458999999984

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.47  E-value=6.5e-12  Score=110.09  Aligned_cols=277  Identities=14%  Similarity=0.253  Sum_probs=163.5

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCc
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKS  219 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~  219 (496)
                      +.|.-+.|..+.-.+|.....++.|.+|++...            .-...+..... .+.+++|+|+|+ .|.+...|-.
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp------------ew~ckIdeg~a-gls~~~WSPdgrhiL~tseF~lr  115 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP------------EWYCKIDEGQA-GLSSISWSPDGRHILLTSEFDLR  115 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecc------------eeEEEeccCCC-cceeeeECCCcceEeeeecceeE
Confidence            446667787745556667778999999999876            22233433344 478999999997 5557778999


Q ss_pred             EEEEecCCccccccCCccccc---cCCCCCceeccCCCCCC-CCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          220 VVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSPKPGD-GNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      |.+|.+.+........++...   ....+............ ..+.+........+..+.-.+-..+++.|+|+| +.  
T Consensus       116 iTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg-~~--  192 (447)
T KOG4497|consen  116 ITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG-NW--  192 (447)
T ss_pred             EEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC-cE--
Confidence            999999886554433332211   00000000000000000 001111112223334444455667889999998 44  


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC----------------
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN----------------  359 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~----------------  359 (496)
                             +.+||.--.-  .+. .....-.+..++|+| .+++|++|+.|+.+|+.+--+-+..                
T Consensus       193 -------laVwd~~Ley--kv~-aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~  261 (447)
T KOG4497|consen  193 -------LAVWDNVLEY--KVY-AYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHL  261 (447)
T ss_pred             -------EEEecchhhh--eee-eeeeccceeEEEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhh
Confidence                   4456643222  111 123346788999999 9999999999999988652210000                


Q ss_pred             -------------------------C-------------CCCCceEec------cCCCCEEEEEEcCCCCCEEEEEeC--
Q 010997          360 -------------------------G-------------VGSPINKFE------GHSAAVLCVQWSPDKSSVFGSSAE--  393 (496)
Q Consensus       360 -------------------------~-------------~~~~~~~~~------~h~~~i~~l~~sp~~~~llas~~~--  393 (496)
                                               .             ....++.++      .....+..++|++|..+ +|+-.+  
T Consensus       262 ~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y-~aTrnd~~  340 (447)
T KOG4497|consen  262 LEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY-AATRNDKY  340 (447)
T ss_pred             hhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE-EeeecCCC
Confidence                                     0             000111111      12345778999999875 455543  


Q ss_pred             CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          394 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       394 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      -+.+-+||++..                .++..--...+|..+.|+|..+.+++..+.        ..+++|.++.
T Consensus       341 PnalW~Wdlq~l----------------~l~avLiQk~piraf~WdP~~prL~vctg~--------srLY~W~psg  392 (447)
T KOG4497|consen  341 PNALWLWDLQNL----------------KLHAVLIQKHPIRAFEWDPGRPRLVVCTGK--------SRLYFWAPSG  392 (447)
T ss_pred             CceEEEEechhh----------------hhhhhhhhccceeEEEeCCCCceEEEEcCC--------ceEEEEcCCC
Confidence            256899999874                122222345689999999998888765332        5699999873

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.46  E-value=7.2e-11  Score=103.30  Aligned_cols=167  Identities=12%  Similarity=0.256  Sum_probs=117.5

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC-CcceeeeecCCCCce
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-NAEFALAMCPTEPYV  211 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~-~~v~~l~~~p~~~~l  211 (496)
                      .+..+...++|.++.+.+   +.|++.- .+.|+||......           +.+..+..-.. ....+++-+.+..+|
T Consensus        87 ~i~el~f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~-----------k~l~~~et~~NPkGlC~~~~~~~k~~L  151 (346)
T KOG2111|consen   87 CIIELSFNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNP-----------KLLHVIETRSNPKGLCSLCPTSNKSLL  151 (346)
T ss_pred             EEEEEEeccceeeEEEcC---CeEEEEe-cCeEEEEEcCCCh-----------hheeeeecccCCCceEeecCCCCceEE
Confidence            345566778999999976   3455554 4589999998663           22222322221 012222222223344


Q ss_pred             EE-ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          212 LS-GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       212 ~s-g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      |. |-.-|.|.|-|+.....                                      .+...+..|...|.|++.+.+|
T Consensus       152 afPg~k~GqvQi~dL~~~~~--------------------------------------~~p~~I~AH~s~Iacv~Ln~~G  193 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKP--------------------------------------NAPSIINAHDSDIACVALNLQG  193 (346)
T ss_pred             EcCCCccceEEEEEhhhcCc--------------------------------------CCceEEEcccCceeEEEEcCCc
Confidence            43 44568999999874321                                      1226788999999999999999


Q ss_pred             CceEEEEcCCCe-EEEEEccCCCccceeeec--cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997          291 AQEFCSVGDDSC-LILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       291 ~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                       .++||+|..|+ |+|||.+++.  .+..+.  .....|.||+||| +..+||++|..|+|+||.++..
T Consensus       194 -t~vATaStkGTLIRIFdt~~g~--~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  194 -TLVATASTKGTLIRIFDTEDGT--LLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             -cEEEEeccCcEEEEEEEcCCCc--EeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecC
Confidence             89999999997 7899999998  343333  2456899999999 9999999999999999998863

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.46  E-value=4.9e-12  Score=111.56  Aligned_cols=216  Identities=16%  Similarity=0.300  Sum_probs=147.6

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      .+..||.+.|+.....| ...-+.+.+.|.+++||--....         +.-+......  ..+++++.+.++...|+.
T Consensus        18 ~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~---------q~wpsI~~~m--P~~~~~~~y~~e~~~L~v   85 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSG---------QYWPSIYHYM--PSPCSAMEYVSESRRLYV   85 (404)
T ss_pred             hhhcCchhhhhhheecc-CCCCeEEccccceeeeEEecccc---------ccCchhhhhC--CCCceEeeeeccceEEEE
Confidence            45568999999998888 44568899999999999654331         1111111112  225789999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |-..|++.-+.+...-.                                    .....+.+..|...|..+-|+-.. ..
T Consensus        86 g~~ngtvtefs~sedfn------------------------------------km~~~r~~~~h~~~v~~~if~~~~-e~  128 (404)
T KOG1409|consen   86 GQDNGTVTEFALSEDFN------------------------------------KMTFLKDYLAHQARVSAIVFSLTH-EW  128 (404)
T ss_pred             EEecceEEEEEhhhhhh------------------------------------hcchhhhhhhhhcceeeEEecCCc-ee
Confidence            99999999887753211                                    111112222333333333333222 12


Q ss_pred             EE---------------------------------------EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC
Q 010997          294 FC---------------------------------------SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL  334 (496)
Q Consensus       294 l~---------------------------------------s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~  334 (496)
                      ++                                       .|...|.|.+-.+.....+.+..+.+|...+.+++|.| 
T Consensus       129 V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-  207 (404)
T KOG1409|consen  129 VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-  207 (404)
T ss_pred             EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-
Confidence            22                                       23333444444443334456777889999999999999 


Q ss_pred             CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ...+|.+|..|..|.+||+--..     .....+.+|...|..++.-+.-..+ .+++.||.|.+||++..
T Consensus       208 ~~~~LfSg~~d~~vi~wdigg~~-----g~~~el~gh~~kV~~l~~~~~t~~l-~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  208 GQRLLFSGASDHSVIMWDIGGRK-----GTAYELQGHNDKVQALSYAQHTRQL-ISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             CCcEEEeccccCceEEEeccCCc-----ceeeeeccchhhhhhhhhhhhheee-eeccCCCeEEEEeccce
Confidence            89999999999999999998632     4466778899999999888877754 59999999999999763

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.46  E-value=5.9e-12  Score=108.76  Aligned_cols=236  Identities=15%  Similarity=0.123  Sum_probs=156.8

Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC---CCC-ceEEecCCCcEEEEecCCccccccCCcc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEP-YVLSGGKDKSVVLWSIQDHITSSATDPA  237 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p---~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~  237 (496)
                      .|.+.+|++......          +.-+++.-....++.+.|..   +|. .|+-+..+|.|.++............+ 
T Consensus        45 ~Gkl~Lys~~d~~~~----------~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~-  113 (339)
T KOG0280|consen   45 SGKLHLYSLEDMKLS----------PLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG-  113 (339)
T ss_pred             ccceEEEeecccccC----------ccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc-
Confidence            467888888776322          12222222222467888864   244 566677789999987654322111111 


Q ss_pred             ccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcccee
Q 010997          238 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK  317 (496)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  317 (496)
                                                       +....-......++.|++.+ ..++++-.+|.+.+-+..........
T Consensus       114 ---------------------------------ls~~ki~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq  159 (339)
T KOG0280|consen  114 ---------------------------------LSSKKISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQ  159 (339)
T ss_pred             ---------------------------------cchhhhhheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecc
Confidence                                             00000011135678888888 66888888899986665554422334


Q ss_pred             eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-EeccCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 010997          318 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGL  396 (496)
Q Consensus       318 ~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i~~l~~sp~~~~llas~~~dg~  396 (496)
                      ..++|.-.+....|+..+.+++.+|+.|+.+..||+|.+.     ..+. ..+.|...|.++.-+|..++.+++|+.|-.
T Consensus       160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-----~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~  234 (339)
T KOG0280|consen  160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-----TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC  234 (339)
T ss_pred             cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-----ceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence            6789999999999998788999999999999999999532     3333 356799999999999987778899999999


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC-cEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          397 LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       397 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      |++||.+..+++...               ..-.+.|+.+.++|... .++++|-.        +-.+|-+.++.
T Consensus       235 i~~~DtRnm~kPl~~---------------~~v~GGVWRi~~~p~~~~~lL~~CMh--------~G~ki~~~~~~  286 (339)
T KOG0280|consen  235 IRVLDTRNMGKPLFK---------------AKVGGGVWRIKHHPEIFHRLLAACMH--------NGAKILDSSDK  286 (339)
T ss_pred             eeeeehhcccCcccc---------------CccccceEEEEecchhhhHHHHHHHh--------cCceEEEeccc
Confidence            999999987654421               11236899999998654 23443333        34666666643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.9e-11  Score=119.68  Aligned_cols=238  Identities=11%  Similarity=0.093  Sum_probs=143.3

Q ss_pred             cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC---CcEEEEecCCccccccCCccccc
Q 010997          164 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD---KSVVLWSIQDHITSSATDPATAK  240 (496)
Q Consensus       164 ~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D---g~i~iwd~~~~~~~~~~~~~~~~  240 (496)
                      .|.++|....            .+ ..+..+.. .+....|+|+|++|+..+.+   ..|.+||+.++..          
T Consensus       180 ~l~~~d~~g~------------~~-~~l~~~~~-~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~----------  235 (430)
T PRK00178        180 TLQRSDYDGA------------RA-VTLLQSRE-PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR----------  235 (430)
T ss_pred             EEEEECCCCC------------Cc-eEEecCCC-ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE----------
Confidence            4777787654            22 23334444 57889999999988766533   3688889875432          


Q ss_pred             cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC--eEEEEEccCCCccceee
Q 010997          241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKV  318 (496)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~  318 (496)
                                                     ..+....+.+....|+|+|..++++.+.+|  .|.+||+.++.   ...
T Consensus       236 -------------------------------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~  281 (430)
T PRK00178        236 -------------------------------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---LSR  281 (430)
T ss_pred             -------------------------------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---eEE
Confidence                                           111122233456899999955555665555  58888988766   223


Q ss_pred             eccCCCCeEEEEecCCCCcEEEEEc-CCC--cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997          319 EKAHDADLHCVDWNPLDDNLILTGS-ADN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  395 (496)
Q Consensus       319 ~~~~~~~v~~i~~sp~~~~~l~sgs-~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg  395 (496)
                      +..+........|+| ++..|+..+ .+|  .|.++|+..      +. ...+...........|+|++..++.+...++
T Consensus       282 lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~------g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~  353 (430)
T PRK00178        282 VTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNG------GR-AERVTFVGNYNARPRLSADGKTLVMVHRQDG  353 (430)
T ss_pred             cccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCC------CC-EEEeecCCCCccceEECCCCCEEEEEEccCC
Confidence            334555566789999 777665544 344  466677765      33 2222222233446789999998765554444


Q ss_pred             --cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997          396 --LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  473 (496)
Q Consensus       396 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~  473 (496)
                        .|.+||+.....             ..+. .   ........|+|+|..++.+..++     ....|.++++.     
T Consensus       354 ~~~l~~~dl~tg~~-------------~~lt-~---~~~~~~p~~spdg~~i~~~~~~~-----g~~~l~~~~~~-----  406 (430)
T PRK00178        354 NFHVAAQDLQRGSV-------------RILT-D---TSLDESPSVAPNGTMLIYATRQQ-----GRGVLMLVSIN-----  406 (430)
T ss_pred             ceEEEEEECCCCCE-------------EEcc-C---CCCCCCceECCCCCEEEEEEecC-----CceEEEEEECC-----
Confidence              477888876311             1111 1   11223568999998877765432     12456666665     


Q ss_pred             CchHHHHHHHhccceEEEeccCC
Q 010997          474 PQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       474 ~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                        +.....+..+.+.+...+|+|
T Consensus       407 --g~~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        407 --GRVRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             --CCceEECcCCCCCcCCCccCC
Confidence              233334555566778888887

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=9.3e-10  Score=105.13  Aligned_cols=306  Identities=12%  Similarity=0.173  Sum_probs=182.0

Q ss_pred             EEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeC----
Q 010997           86 RLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTD----  161 (496)
Q Consensus        86 ~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~----  161 (496)
                      .+|+|+.+. .....|++++++..                  ...+.......-......++++| ++++|.+...    
T Consensus         1 ~~~vgsy~~-~~~~gI~~~~~d~~------------------~g~l~~~~~~~~~~~Ps~l~~~~-~~~~LY~~~e~~~~   60 (345)
T PF10282_consen    1 TLYVGSYTN-GKGGGIYVFRFDEE------------------TGTLTLVQTVAEGENPSWLAVSP-DGRRLYVVNEGSGD   60 (345)
T ss_dssp             EEEEEECCS-SSSTEEEEEEEETT------------------TTEEEEEEEEEESSSECCEEE-T-TSSEEEEEETTSST
T ss_pred             CEEEEcCCC-CCCCcEEEEEEcCC------------------CCCceEeeeecCCCCCceEEEEe-CCCEEEEEEccccC
Confidence            478888877 35577877765321                  11233334344555677788999 6667766655    


Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec-CCCcEEEEecCCc-cccccCCcccc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDH-ITSSATDPATA  239 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~-~Dg~i~iwd~~~~-~~~~~~~~~~~  239 (496)
                      +|.|..|.+......        ...+........ ....++++|++++|+++. .+|+|.++++... ...........
T Consensus        61 ~g~v~~~~i~~~~g~--------L~~~~~~~~~g~-~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~  131 (345)
T PF10282_consen   61 SGGVSSYRIDPDTGT--------LTLLNSVPSGGS-SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRH  131 (345)
T ss_dssp             TTEEEEEEEETTTTE--------EEEEEEEEESSS-CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEES
T ss_pred             CCCEEEEEECCCcce--------eEEeeeeccCCC-CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeeccc
Confidence            579999998765111        011222221122 235799999999888775 5899999999753 11100000000


Q ss_pred             ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccce---
Q 010997          240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI---  316 (496)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---  316 (496)
                      ...+                        .   ..-........++.|+|++..++++.-....|.+|++......+.   
T Consensus       132 ~g~g------------------------~---~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~  184 (345)
T PF10282_consen  132 EGSG------------------------P---NPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD  184 (345)
T ss_dssp             EEEE------------------------S---STTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred             CCCC------------------------C---cccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence            0000                        0   000011234678899999955566655667899999977652111   


Q ss_pred             eeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCCCceEecc----C--CCCEEEEEEcCCCCCEEE
Q 010997          317 KVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEG----H--SAAVLCVQWSPDKSSVFG  389 (496)
Q Consensus       317 ~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~----h--~~~i~~l~~sp~~~~lla  389 (496)
                      ............++|+| ++.++ ++.-.++.|.++++.....  ....+..+..    .  ......|+++|+|++|++
T Consensus       185 ~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv  261 (345)
T PF10282_consen  185 SIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV  261 (345)
T ss_dssp             EEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE
T ss_pred             ccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEE
Confidence            11224567789999999 76655 5566688999999883210  0112222211    1  226789999999999998


Q ss_pred             EEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          390 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       390 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +....+.|.+|++.....           ....+............++++|++.+++++...+       +.|.+|++.
T Consensus       262 snr~~~sI~vf~~d~~~g-----------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-------~~v~vf~~d  322 (345)
T PF10282_consen  262 SNRGSNSISVFDLDPATG-----------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-------NTVSVFDID  322 (345)
T ss_dssp             EECTTTEEEEEEECTTTT-----------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-------TEEEEEEEE
T ss_pred             EeccCCEEEEEEEecCCC-----------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-------CeEEEEEEe
Confidence            888899999999954211           1123333332234478999999999998876655       899999985

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.42  E-value=4.9e-11  Score=113.71  Aligned_cols=266  Identities=14%  Similarity=0.175  Sum_probs=157.8

Q ss_pred             ceEEEecCCCceeE-EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          132 KKHKTIIHPGEVNR-IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       132 ~~~~~~~h~~~V~~-l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      +.+..+...+.+.. +.|+| +++++++++.||.|.++|+.+.            +.+..+..-..  ..+++++++|++
T Consensus        27 ~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~------------~~v~~i~~G~~--~~~i~~s~DG~~   91 (369)
T PF02239_consen   27 KVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATG------------KVVATIKVGGN--PRGIAVSPDGKY   91 (369)
T ss_dssp             SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSS------------SEEEEEE-SSE--EEEEEE--TTTE
T ss_pred             eEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcc------------cEEEEEecCCC--cceEEEcCCCCE
Confidence            44555655555543 56788 8888888899999999999988            55556655443  479999999998


Q ss_pred             eEEec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          211 VLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       211 l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      ++++. ..+.+.++|.++.+.........                                 .........+..+..+|.
T Consensus        92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~---------------------------------~~~~~~~~Rv~aIv~s~~  138 (369)
T PF02239_consen   92 VYVANYEPGTVSVIDAETLEPVKTIPTGG---------------------------------MPVDGPESRVAAIVASPG  138 (369)
T ss_dssp             EEEEEEETTEEEEEETTT--EEEEEE--E---------------------------------E-TTTS---EEEEEE-SS
T ss_pred             EEEEecCCCceeEeccccccceeeccccc---------------------------------ccccccCCCceeEEecCC
Confidence            88664 68999999987643321111000                                 000013456778888888


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEE-EcCCCcEEEEeCCCCCCC---------
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSN---------  359 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~dg~i~iwd~~~~~~~---------  359 (496)
                      .+.++++.-+.+.|-+.|...... ................|+| +++++++ ...+..|.++|..+....         
T Consensus       139 ~~~fVv~lkd~~~I~vVdy~d~~~-~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p  216 (369)
T PF02239_consen  139 RPEFVVNLKDTGEIWVVDYSDPKN-LKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKP  216 (369)
T ss_dssp             SSEEEEEETTTTEEEEEETTTSSC-EEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSB
T ss_pred             CCEEEEEEccCCeEEEEEeccccc-cceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEEEEeeccccc
Confidence            855666666678999989877653 2323334556778899999 7877655 455667878876652100         


Q ss_pred             ----------------------------------------CCCCCceEeccCCCCEEEEEEcCCCCCEEEE---EeCCCc
Q 010997          360 ----------------------------------------GVGSPINKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGL  396 (496)
Q Consensus       360 ----------------------------------------~~~~~~~~~~~h~~~i~~l~~sp~~~~llas---~~~dg~  396 (496)
                                                              ...+.+.++.....+ .-+..+|+++++.+.   +...+.
T Consensus       217 ~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~  295 (369)
T PF02239_consen  217 HPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADT  295 (369)
T ss_dssp             EETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-
T ss_pred             cccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCce
Confidence                                                    001222223333333 567789999988765   455689


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCCeeEEEec-CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          397 LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       397 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      |.++|..+.               +....+. +-...+..+.|+++|..+.+|.-+.      ++.|.|||...
T Consensus       296 v~viD~~tl---------------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~------~~~i~v~D~~T  348 (369)
T PF02239_consen  296 VQVIDKKTL---------------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG------NGAIVVYDAKT  348 (369)
T ss_dssp             EEEEECCGT---------------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--------TTEEEEEETTT
T ss_pred             EEEEECcCc---------------ceeEEEeccCCCcEeccEECCCCCEEEEEEecC------CCEEEEEECCC
Confidence            999999884               3333332 1123488999999999999987665      45999999983

...

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1.9e-09  Score=96.70  Aligned_cols=296  Identities=13%  Similarity=0.194  Sum_probs=186.8

Q ss_pred             eEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeC--
Q 010997           84 RQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTD--  161 (496)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~--  161 (496)
                      .+.+|+||.|.+. ..-|++|+++-..                  ..+...++..+.+.++-|+++| +.+.|.++..  
T Consensus         2 ~~~~YiGtyT~~~-s~gI~v~~ld~~~------------------g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~   61 (346)
T COG2706           2 KQTVYIGTYTKRE-SQGIYVFNLDTKT------------------GELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPG   61 (346)
T ss_pred             ceEEEEeeecccC-CCceEEEEEeCcc------------------cccchhhhccccCCCceEEECC-CCCEEEEEEecC
Confidence            3689999988664 4456777664211                  1233445667888899999999 7777777655  


Q ss_pred             -CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC-CCcEEEEecCCccccccCCcccc
Q 010997          162 -SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DKSVVLWSIQDHITSSATDPATA  239 (496)
Q Consensus       162 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-Dg~i~iwd~~~~~~~~~~~~~~~  239 (496)
                       +|.|-.|.++.........      -...+.++   +-.-+++++++++|+++.. -|.|.++-++..-....      
T Consensus        62 ~~ggvaay~iD~~~G~Lt~l------n~~~~~g~---~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~------  126 (346)
T COG2706          62 EEGGVAAYRIDPDDGRLTFL------NRQTLPGS---PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP------  126 (346)
T ss_pred             CcCcEEEEEEcCCCCeEEEe------eccccCCC---CCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc------
Confidence             4678777776531111100      00112222   2267899999999888764 58999998865211100      


Q ss_pred             ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC----------ceeEEEEccCCCceEEEEc-CCCeEEEEEc
Q 010997          240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED----------TVEDVTFCPSSAQEFCSVG-DDSCLILWDA  308 (496)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----------~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~  308 (496)
                                                     ......|.+          .+-...+.|++ ++++++. .--.|.+|++
T Consensus       127 -------------------------------~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706         127 -------------------------------VVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             -------------------------------ceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEc
Confidence                                           000111111          26677899999 5555553 3457999999


Q ss_pred             cCCCcccee-eeccCCCCeEEEEecCCCCcEEEEE-cCCCcEEEEeCCCCCCCCCCCCceEecc---------CCCCEEE
Q 010997          309 RVGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEG---------HSAAVLC  377 (496)
Q Consensus       309 ~~~~~~~~~-~~~~~~~~v~~i~~sp~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~~~~~~~~---------h~~~i~~  377 (496)
                      ..+...... ....-......|.|+| ++.+.... -.+++|.+|......     ..+..++.         -......
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~-----g~~~~lQ~i~tlP~dF~g~~~~aa  248 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAV-----GKFEELQTIDTLPEDFTGTNWAAA  248 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCC-----ceEEEeeeeccCccccCCCCceeE
Confidence            876522111 1113456788999999 88776554 458999999988732     22222221         1345678


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  457 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg  457 (496)
                      |..+|+|++|.|+--....|.+|.+...+..           ..++.....+...-.++.+++.+.+|+|+.-+.     
T Consensus       249 Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~-----------L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s-----  312 (346)
T COG2706         249 IHISPDGRFLYASNRGHDSIAVFSVDPDGGK-----------LELVGITPTEGQFPRDFNINPSGRFLIAANQKS-----  312 (346)
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----------EEEEEEeccCCcCCccceeCCCCCEEEEEccCC-----
Confidence            9999999987766555668999988764221           133444444555578999999888777655443     


Q ss_pred             CCCeEEEeecCCC
Q 010997          458 GGGTLQIWRMSDL  470 (496)
Q Consensus       458 ~Dg~i~iw~~~~~  470 (496)
                        ..|.+|.+...
T Consensus       313 --d~i~vf~~d~~  323 (346)
T COG2706         313 --DNITVFERDKE  323 (346)
T ss_pred             --CcEEEEEEcCC
Confidence              67999999853

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.42  E-value=3.6e-11  Score=113.63  Aligned_cols=196  Identities=19%  Similarity=0.274  Sum_probs=150.7

Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec--------------------CCCC
Q 010997          150 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--------------------PTEP  209 (496)
Q Consensus       150 p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~--------------------p~~~  209 (496)
                      |....++|....||.++|||..++.....+      .|...+.+    ..++..|.                    .+..
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~------~p~~~~s~----t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~   71 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEF------APIASLSG----TCTYTKWGLSADYSPMKWLSLEKAKKASLDTS   71 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeee------ccchhccC----cceeEEEEEEeccchHHHHhHHHHhhccCCce
Confidence            336779999999999999999987433221      22222222    12233331                    1223


Q ss_pred             ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      .|+-|...|.|.++++..+.....                                      ..-..|.+.|+++.++.+
T Consensus        72 ~lvlgt~~g~v~~ys~~~g~it~~--------------------------------------~st~~h~~~v~~~~~~~~  113 (541)
T KOG4547|consen   72 MLVLGTPQGSVLLYSVAGGEITAK--------------------------------------LSTDKHYGNVNEILDAQR  113 (541)
T ss_pred             EEEeecCCccEEEEEecCCeEEEE--------------------------------------EecCCCCCcceeeecccc
Confidence            567777888888888875543211                                      111368999999999887


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      - ..|.+++.|+.+..|+.....  .+.........+.+++.+| ++..+++|+  +.|++||+.+      .+.+.+|.
T Consensus       114 ~-~ciyS~~ad~~v~~~~~~~~~--~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~------kevv~~ft  181 (541)
T KOG4547|consen  114 L-GCIYSVGADLKVVYILEKEKV--IIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIET------KEVVITFT  181 (541)
T ss_pred             c-CceEecCCceeEEEEecccce--eeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccC------ceEEEEec
Confidence            7 689999999999999998887  6777778888999999999 899999886  6799999999      88999999


Q ss_pred             cCCCCEEEEEEcCC-----CCCEEEEEeCCCcEEEEECCCC
Q 010997          370 GHSAAVLCVQWSPD-----KSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       370 ~h~~~i~~l~~sp~-----~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +|.++|.+++|--+     |.++|.++..+..+.+|-+...
T Consensus       182 gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  182 GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            99999999999887     7888888888888999988764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.41  E-value=3e-10  Score=112.21  Aligned_cols=201  Identities=12%  Similarity=0.156  Sum_probs=126.7

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      ....+.+.+...+|+| +++.||.++..   ..|++||+.++.            . ..+..+.. .+.+++|+|+++.|
T Consensus       184 ~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~------------~-~~~~~~~~-~~~~~~~spDg~~l  248 (417)
T TIGR02800       184 TITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQ------------R-EKVASFPG-MNGAPAFSPDGSKL  248 (417)
T ss_pred             EeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCC------------E-EEeecCCC-CccceEECCCCCEE
Confidence            3445677789999999 77777776543   479999998762            1 12233333 45678999999866


Q ss_pred             E-EecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          212 L-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       212 ~-sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      + +.+.++  .|.+||+.++..                                         ..+..+........|+|
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~s~  287 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQL-----------------------------------------TRLTNGPGIDTEPSWSP  287 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCE-----------------------------------------EECCCCCCCCCCEEECC
Confidence            5 455554  588888765322                                         12222333345668999


Q ss_pred             CCCceEEEEcCCC--eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCC
Q 010997          289 SSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       289 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~  363 (496)
                      ++..++++...++  .|.++|+.++.   ...+..+...+..+.|+| ++.+++.++.++   .|.+||+.+      +.
T Consensus       288 dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~------~~  357 (417)
T TIGR02800       288 DGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDG------GG  357 (417)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCC------CC
Confidence            9844444444444  57777776655   223334556677889999 888888887775   788999876      22


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEECC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYE  403 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~--i~iwd~~  403 (496)
                       ...+... .......|+|++..|+++...++.  +.+.+..
T Consensus       358 -~~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~  397 (417)
T TIGR02800       358 -ERVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD  397 (417)
T ss_pred             -eEEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence             2333222 233456899999977655554443  4444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=6.2e-12  Score=110.88  Aligned_cols=236  Identities=17%  Similarity=0.274  Sum_probs=155.4

Q ss_pred             ccceEEEecCCCceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccc-------------------cCCC----CCC
Q 010997          130 FVKKHKTIIHPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHA-------------------VLGA----TNS  185 (496)
Q Consensus       130 ~~~~~~~~~h~~~V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~-------------------~~~~----~~~  185 (496)
                      .+..++.+.-...|+.++|.++ +...+...+.|.+|++|.+........                   +.+.    ...
T Consensus        74 EFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea  153 (433)
T KOG1354|consen   74 EFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEA  153 (433)
T ss_pred             ccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeee
Confidence            3344445556677999999884 445666778899999999876533321                   0000    001


Q ss_pred             CCceEE-ecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997          186 RPDLIL-TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  264 (496)
Q Consensus       186 ~~~~~l-~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (496)
                      .|...+ .+|+- -|.++.++.|...++|+. |=.|.+|+++-......                            +.+
T Consensus       154 ~prRv~aNaHty-hiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFn----------------------------IVD  203 (433)
T KOG1354|consen  154 SPRRVYANAHTY-HINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFN----------------------------IVD  203 (433)
T ss_pred             eeeeecccccee-EeeeeeecCccceEeecc-ceeeeeccccccCCcee----------------------------EEE
Confidence            122222 24554 588999999998888876 88999999873211000                            000


Q ss_pred             CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc-------------cc-eeeeccCCCCeEEEE
Q 010997          265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-------------PV-IKVEKAHDADLHCVD  330 (496)
Q Consensus       265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------------~~-~~~~~~~~~~v~~i~  330 (496)
                      .   +| ..+..-..-|++..|||...++|+-.+..|+|++-|+|....             |. ...+..--..|..+.
T Consensus       204 I---KP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvK  279 (433)
T KOG1354|consen  204 I---KP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVK  279 (433)
T ss_pred             c---cc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceE
Confidence            0   00 112223456889999999888999999999999999995431             00 001112235688999


Q ss_pred             ecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC------------CC---EEEEEEcCCCCCEEEEEeCCC
Q 010997          331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS------------AA---VLCVQWSPDKSSVFGSSAEDG  395 (496)
Q Consensus       331 ~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------------~~---i~~l~~sp~~~~llas~~~dg  395 (496)
                      |++ +|+|+++-+. -+|++||+...     .+++.++..|.            ..   -..++|+.++.++ +||+...
T Consensus       280 Fs~-sGryilsRDy-ltvk~wD~nme-----~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v-~TGsy~n  351 (433)
T KOG1354|consen  280 FSH-SGRYILSRDY-LTVKLWDLNME-----AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV-MTGSYNN  351 (433)
T ss_pred             Ecc-CCcEEEEecc-ceeEEEecccc-----CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceE-ecccccc
Confidence            999 8999987643 58999999653     46777776663            22   2568999998865 5999999


Q ss_pred             cEEEEECCCCCc
Q 010997          396 LLNIWDYEKVGK  407 (496)
Q Consensus       396 ~i~iwd~~~~~~  407 (496)
                      ..++|++..+..
T Consensus       352 ~frvf~~~~gsk  363 (433)
T KOG1354|consen  352 VFRVFNLARGSK  363 (433)
T ss_pred             eEEEecCCCCcc
Confidence            999999766443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.40  E-value=2.5e-11  Score=114.72  Aligned_cols=211  Identities=11%  Similarity=0.138  Sum_probs=150.0

Q ss_pred             CCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997          206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  285 (496)
Q Consensus       206 p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  285 (496)
                      |-..|+|....||.+|+|+...++....+.+....  .+.....            .|.       ...........++.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~--s~t~~~~------------~w~-------L~~~~s~~k~~~~~   61 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL--SGTCTYT------------KWG-------LSADYSPMKWLSLE   61 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhc--cCcceeE------------EEE-------EEeccchHHHHhHH
Confidence            34568999999999999999887665444331100  0000000            000       00000000111111


Q ss_pred             Ec---cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC
Q 010997          286 FC---PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG  362 (496)
Q Consensus       286 ~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  362 (496)
                      +-   ..+..+++-|...|.|.+|++..++......-..|.+.|+++.++. +-..|.+++.|+.+..|+...      .
T Consensus        62 ~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~------~  134 (541)
T KOG4547|consen   62 KAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE------K  134 (541)
T ss_pred             HHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEeccc------c
Confidence            10   1122578889999999999999888332333357999999999998 788999999999999999998      7


Q ss_pred             CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC-
Q 010997          363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS-  441 (496)
Q Consensus       363 ~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~-  441 (496)
                      ..++.+..-...+.+++.+||+. ++++++  +.|++||+.+.               +.+..+.||.++|..++|-.. 
T Consensus       135 ~~~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~~~~k---------------evv~~ftgh~s~v~t~~f~~~~  196 (541)
T KOG4547|consen  135 VIIRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLDIETK---------------EVVITFTGHGSPVRTLSFTTLI  196 (541)
T ss_pred             eeeeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEEccCc---------------eEEEEecCCCcceEEEEEEEec
Confidence            78888888889999999999988 566775  68999999985               788889999999999999876 


Q ss_pred             ----CCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          442 ----DPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       442 ----~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                          |.+++.+...       +.-+.+|-+..
T Consensus       197 ~g~~G~~vLssa~~-------~r~i~~w~v~~  221 (541)
T KOG4547|consen  197 DGIIGKYVLSSAAA-------ERGITVWVVEK  221 (541)
T ss_pred             cccccceeeecccc-------ccceeEEEEEc
Confidence                6777765443       37788888763

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.39  E-value=1.9e-12  Score=113.38  Aligned_cols=224  Identities=12%  Similarity=0.172  Sum_probs=148.9

Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-EecCCCcEEEEe
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWS  224 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg~~Dg~i~iwd  224 (496)
                      ..|+| +++++|+++.- .+.|-|..+.+            ....+.-- + .|.-+.|..+.-+++ ....|+.|.+|+
T Consensus        14 c~fSp-~g~yiAs~~~y-rlviRd~~tlq------------~~qlf~cl-d-ki~yieW~ads~~ilC~~yk~~~vqvws   77 (447)
T KOG4497|consen   14 CSFSP-CGNYIASLSRY-RLVIRDSETLQ------------LHQLFLCL-D-KIVYIEWKADSCHILCVAYKDPKVQVWS   77 (447)
T ss_pred             eeECC-CCCeeeeeeee-EEEEeccchhh------------HHHHHHHH-H-HhhheeeeccceeeeeeeeccceEEEEE
Confidence            46899 99999999876 88888887762            22222221 2 366788988877655 456788999999


Q ss_pred             cCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEE
Q 010997          225 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI  304 (496)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  304 (496)
                      +....-                                        ...+.....++..++|+|+|..++.+..-+-.|.
T Consensus        78 l~Qpew----------------------------------------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriT  117 (447)
T KOG4497|consen   78 LVQPEW----------------------------------------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRIT  117 (447)
T ss_pred             eeccee----------------------------------------EEEeccCCCcceeeeECCCcceEeeeecceeEEE
Confidence            975432                                        1345556678999999999988888999999999


Q ss_pred             EEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC
Q 010997          305 LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK  384 (496)
Q Consensus       305 iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~  384 (496)
                      +|.+.+..  .. ...--...+..++|+| ++++.+..+.-...-.+.+..-.   ....+..+...+-..+.+.|+|||
T Consensus       118 VWSL~t~~--~~-~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~---~W~ll~~f~~dT~DltgieWsPdg  190 (447)
T KOG4497|consen  118 VWSLNTQK--GY-LLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCK---AWILLKEFKLDTIDLTGIEWSPDG  190 (447)
T ss_pred             EEEeccce--eE-EecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhH---HHHHHHhcCCCcccccCceECCCC
Confidence            99998876  22 2222334568899999 99999888765332222222100   034555666666678899999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEE
Q 010997          385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI  464 (496)
Q Consensus       385 ~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~i  464 (496)
                      .. ||         |||.--.-              ....  ..-.-.+..++|+|.+.++ +       .|+.|+.+||
T Consensus       191 ~~-la---------Vwd~~Ley--------------kv~a--Ye~~lG~k~v~wsP~~qfl-a-------vGsyD~~lrv  236 (447)
T KOG4497|consen  191 NW-LA---------VWDNVLEY--------------KVYA--YERGLGLKFVEWSPCNQFL-A-------VGSYDQMLRV  236 (447)
T ss_pred             cE-EE---------Eecchhhh--------------eeee--eeeccceeEEEeccccceE-E-------eeccchhhhh
Confidence            85 33         45432210              0010  1112368889999977654 4       5566688887


Q ss_pred             ee
Q 010997          465 WR  466 (496)
Q Consensus       465 w~  466 (496)
                      -+
T Consensus       237 ln  238 (447)
T KOG4497|consen  237 LN  238 (447)
T ss_pred             hc
Confidence            43

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=2.2e-10  Score=112.16  Aligned_cols=187  Identities=11%  Similarity=0.082  Sum_probs=108.2

Q ss_pred             CCceeEEEEccCCCceEEEEcCCC----eEEEEEccCCC-ccceeeeccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEE
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMF  351 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~-~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iw  351 (496)
                      .+.....+|+|+|..++++...+|    .+.+|++..+. .................+|+| ++..|+..+ .+|...||
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly  308 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIY  308 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEE
Confidence            344456799999955444443333    45557776532 112222222223446789999 888776654 56766666


Q ss_pred             eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC--CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997          352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  429 (496)
Q Consensus       352 d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h  429 (496)
                      .+.....   +.....+..+...+....|||+|+.|+.++..+  ..|.+||+.....             ..   +...
T Consensus       309 ~~~~~~~---g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-------------~~---Lt~~  369 (428)
T PRK01029        309 IMQIDPE---GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-------------YQ---LTTS  369 (428)
T ss_pred             EEECccc---ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-------------EE---ccCC
Confidence            4432100   123444555556678899999999765555443  3689999877411             11   1222


Q ss_pred             CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          430 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       430 ~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ...+....|+|++..++.+....     ....|.+|++..      ++. ..+....+.+...+|+|
T Consensus       370 ~~~~~~p~wSpDG~~L~f~~~~~-----g~~~L~~vdl~~------g~~-~~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        370 PENKESPSWAIDSLHLVYSAGNS-----NESELYLISLIT------KKT-RKIVIGSGEKRFPSWGA  424 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCC-----CCceEEEEECCC------CCE-EEeecCCCcccCceecC
Confidence            23467789999998887665432     246788889873      221 22222344566677776

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.38  E-value=4.2e-12  Score=133.15  Aligned_cols=193  Identities=16%  Similarity=0.298  Sum_probs=150.2

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      ..|-..|.|+.-+|.+ .+.+||+.||.|++|....+            ..+..++.-....|+.+.|+.+|+.+..+..
T Consensus      2205 k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~------------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHG------------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDG 2271 (2439)
T ss_pred             ecccCceeeecCCCCC-ceEEecCCCceEEEEeccCC------------CeEEEeeccCcchhhhhhhcccCCceeeecc
Confidence            3455678888888844 46679999999999999877            4444554333346899999999999999999


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      ||.+.+|.+..                                         .+......|.....++.|-.   ..+++
T Consensus      2272 dg~l~l~q~~p-----------------------------------------k~~~s~qchnk~~~Df~Fi~---s~~~t 2307 (2439)
T KOG1064|consen 2272 DGDLSLWQASP-----------------------------------------KPYTSWQCHNKALSDFRFIG---SLLAT 2307 (2439)
T ss_pred             CCceeecccCC-----------------------------------------cceeccccCCccccceeeee---hhhhc
Confidence            99999998762                                         22345567888888888875   34666


Q ss_pred             E---cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          297 V---GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       297 ~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      +   ++++.+.+||.-...... .....|...++++++-| ..++|++|+.+|.|++||++.      .+.++.+..   
T Consensus      2308 ag~s~d~~n~~lwDtl~~~~~s-~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rq------rql~h~~~~--- 2376 (2439)
T KOG1064|consen 2308 AGRSSDNRNVCLWDTLLPPMNS-LVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQ------RQLRHTFQA--- 2376 (2439)
T ss_pred             cccCCCCCcccchhcccCcccc-eeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHH------HHHHHHhhh---
Confidence            5   467899999976544222 22268999999999999 899999999999999999998      677777764   


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                            +. ... .|++|+..|.|+||++...
T Consensus      2377 ------~~-~~~-~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2377 ------LD-TRE-YFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             ------hh-hhh-eeeccCcccceEEEEcccc
Confidence                  44 334 5679999999999999885

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=2.3e-11  Score=114.27  Aligned_cols=210  Identities=12%  Similarity=0.226  Sum_probs=149.0

Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEE
Q 010997          144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLW  223 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iw  223 (496)
                      ..++++..+-.++..|+. ..|+-++++.+            +.+..+....+ +++++..++...+|++|+.||.|..|
T Consensus       137 RDm~y~~~scDly~~gsg-~evYRlNLEqG------------rfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g~VEfw  202 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSG-SEVYRLNLEQG------------RFLNPFETDSG-ELNVVSINEEHGLLACGTEDGVVEFW  202 (703)
T ss_pred             ccccccCCCccEEEeecC-cceEEEEcccc------------ccccccccccc-cceeeeecCccceEEecccCceEEEe
Confidence            455666545555555544 48999999988            44555555544 68999999999999999999999999


Q ss_pred             ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeE
Q 010997          224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL  303 (496)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  303 (496)
                      |.+.............                             -...........|+++.|+.+| -.+++|..+|.|
T Consensus       203 DpR~ksrv~~l~~~~~-----------------------------v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v  252 (703)
T KOG2321|consen  203 DPRDKSRVGTLDAASS-----------------------------VNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSV  252 (703)
T ss_pred             cchhhhhheeeecccc-----------------------------cCCCccccccCcceEEEecCCc-eeEEeeccCCcE
Confidence            9986533221111000                             0001111223459999999887 789999999999


Q ss_pred             EEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC
Q 010997          304 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD  383 (496)
Q Consensus       304 ~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~  383 (496)
                      .|||+|+.+ |....-....-+|..+.|.+.+++--+.......++|||-.+      +++...+.. ...+..+++-|+
T Consensus       253 ~iyDLRa~~-pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~------Gk~~asiEp-t~~lND~C~~p~  324 (703)
T KOG2321|consen  253 LIYDLRASK-PLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT------GKPMASIEP-TSDLNDFCFVPG  324 (703)
T ss_pred             EEEEcccCC-ceeecccCCccceeeecccccCCCceEEecchHHhhhccccc------CCceeeccc-cCCcCceeeecC
Confidence            999999987 344444455678999999884333333334567899999998      788887774 455999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCC
Q 010997          384 KSSVFGSSAEDGLLNIWDYEKVG  406 (496)
Q Consensus       384 ~~~llas~~~dg~i~iwd~~~~~  406 (496)
                      +.. |.++-.++.+..|=+...+
T Consensus       325 sGm-~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  325 SGM-FFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             Cce-EEEecCCCcceeEEccccC
Confidence            884 5589888888888877653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=2.9e-10  Score=106.90  Aligned_cols=121  Identities=16%  Similarity=0.375  Sum_probs=85.8

Q ss_pred             cCCCCeEEEEecCCCCcEEE--EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC--CCc
Q 010997          321 AHDADLHCVDWNPLDDNLIL--TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGL  396 (496)
Q Consensus       321 ~~~~~v~~i~~sp~~~~~l~--sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~--dg~  396 (496)
                      ...++|.++.|+| ++.-|+  -|-.=..+.|||++.       .++..+.  .++=+++-|+|.|..|+++|-.  -|.
T Consensus       268 ~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~-------~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~  337 (566)
T KOG2315|consen  268 LKEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRG-------KPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGD  337 (566)
T ss_pred             CCCCCceEEEECC-CCCEEEEEEecccceEEEEcCCC-------CEeEeCC--CCCccceEECCCCCEEEEeecCCCCCc
Confidence            4578999999999 775444  456678999999994       7777764  6777899999999966544433  488


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          397 LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       397 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      |-|||+...               .++..+..  ..-+-+.|+|+|.+++.++..-  =---|+.++||++...
T Consensus       338 mEvwDv~n~---------------K~i~~~~a--~~tt~~eW~PdGe~flTATTaP--RlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  338 MEVWDVPNR---------------KLIAKFKA--ANTTVFEWSPDGEYFLTATTAP--RLRVDNGIKIWHYTGS  392 (566)
T ss_pred             eEEEeccch---------------hhcccccc--CCceEEEEcCCCcEEEEEeccc--cEEecCCeEEEEecCc
Confidence            999999884               22322222  2345689999999887653210  0114799999999854

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.36  E-value=4.1e-10  Score=107.43  Aligned_cols=270  Identities=9%  Similarity=0.067  Sum_probs=155.4

Q ss_pred             cEE-EEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997          154 KIV-ATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  232 (496)
Q Consensus       154 ~~l-at~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~  232 (496)
                      +++ ++-..+|.|.|.|..+.            +.+..+..... .-..+.++|||+++++++.||.|.++|+.+.+.  
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~------------~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~--   70 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATN------------KVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV--   70 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-------------SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE--
T ss_pred             cEEEEEecCCCEEEEEECCCC------------eEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccE--
Confidence            444 45667899999999887            56667766543 334578999999999999999999999986543  


Q ss_pred             cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC
Q 010997          233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT  312 (496)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~  312 (496)
                                                            +..+.. .....+++++++|..+++++...+.+.++|.++.+
T Consensus        71 --------------------------------------v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle  111 (369)
T PF02239_consen   71 --------------------------------------VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE  111 (369)
T ss_dssp             --------------------------------------EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred             --------------------------------------EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence                                                  233332 23467899999996555666789999999998877


Q ss_pred             ccceeeecc-------CCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC
Q 010997          313 SPVIKVEKA-------HDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK  384 (496)
Q Consensus       313 ~~~~~~~~~-------~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~  384 (496)
                        .+.....       ....+..|..+| ... ++++--..+.|.+.|.....     ....+............|+|++
T Consensus       112 --~v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~-----~~~~~~i~~g~~~~D~~~dpdg  183 (369)
T PF02239_consen  112 --PVKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPK-----NLKVTTIKVGRFPHDGGFDPDG  183 (369)
T ss_dssp             --EEEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSS-----CEEEEEEE--TTEEEEEE-TTS
T ss_pred             --ceeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEecccc-----ccceeeecccccccccccCccc
Confidence              3433322       245678888888 455 55555666899999988732     1222222345567889999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCcccCCCCCC----------------------------------------CCCCCeeEE
Q 010997          385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT----------------------------------------TNYPAGLFF  424 (496)
Q Consensus       385 ~~llas~~~dg~i~iwd~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~  424 (496)
                      ++++++...++.|-++|..+.......+...                                        +....+.+.
T Consensus       184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~  263 (369)
T PF02239_consen  184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK  263 (369)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred             ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence            9988777777889999987642211100000                                        000111222


Q ss_pred             EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc-ceEEEeccCC
Q 010997          425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK-AHVISCTSKP  496 (496)
Q Consensus       425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~-~~v~~~~~sP  496 (496)
                      .......+ ..+..+|+++++.+...    .+...++|.|+|..+      .+.+.++.... ..+..+.|+|
T Consensus       264 ~I~~~G~g-lFi~thP~s~~vwvd~~----~~~~~~~v~viD~~t------l~~~~~i~~~~~~~~~h~ef~~  325 (369)
T PF02239_consen  264 TIPTQGGG-LFIKTHPDSRYVWVDTF----LNPDADTVQVIDKKT------LKVVKTITPGPGKRVVHMEFNP  325 (369)
T ss_dssp             EEE-SSSS---EE--TT-SEEEEE-T----T-SSHT-EEEEECCG------TEEEE-HHHHHT--EEEEEE-T
T ss_pred             EEECCCCc-ceeecCCCCccEEeecc----CCCCCceEEEEECcC------cceeEEEeccCCCcEeccEECC
Confidence            22222333 56788999999887622    223358999999994      34444443222 2356666654

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=3e-10  Score=112.14  Aligned_cols=220  Identities=11%  Similarity=0.103  Sum_probs=128.2

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeC-CC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTD-SP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-  212 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-  212 (496)
                      ..+...+...+|+| +++.||..+. ++  .|++||+.++..          +.+..+.+    .....+|+|+|+.|+ 
T Consensus       214 ~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~----------~~lt~~~g----~~~~~~wSPDG~~La~  278 (448)
T PRK04792        214 LRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVR----------EKVTSFPG----INGAPRFSPDGKKLAL  278 (448)
T ss_pred             ecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCe----------EEecCCCC----CcCCeeECCCCCEEEE
Confidence            34566788999999 7776665543 33  588889877621          11111222    234789999999776 


Q ss_pred             EecCCCc--EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          213 SGGKDKS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       213 sg~~Dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      +.+.+|.  |.++|+.++..                                         ..+..+.......+|+|++
T Consensus       279 ~~~~~g~~~Iy~~dl~tg~~-----------------------------------------~~lt~~~~~~~~p~wSpDG  317 (448)
T PRK04792        279 VLSKDGQPEIYVVDIATKAL-----------------------------------------TRITRHRAIDTEPSWHPDG  317 (448)
T ss_pred             EEeCCCCeEEEEEECCCCCe-----------------------------------------EECccCCCCccceEECCCC
Confidence            4566775  66667654321                                         2233334455678999999


Q ss_pred             CceEEEEcCCCe--EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CC--cEEEEeCCCCCCCCCCCCc
Q 010997          291 AQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--SVRMFDRRNLTSNGVGSPI  365 (496)
Q Consensus       291 ~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg--~i~iwd~~~~~~~~~~~~~  365 (496)
                      ..++++...++.  |.++|+.+++.  .. +..........+|+| ++.+|+..+. ++  .|.++|+.+      +. .
T Consensus       318 ~~I~f~s~~~g~~~Iy~~dl~~g~~--~~-Lt~~g~~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~------g~-~  386 (448)
T PRK04792        318 KSLIFTSERGGKPQIYRVNLASGKV--SR-LTFEGEQNLGGSITP-DGRSMIMVNRTNGKFNIARQDLET------GA-M  386 (448)
T ss_pred             CEEEEEECCCCCceEEEEECCCCCE--EE-EecCCCCCcCeeECC-CCCEEEEEEecCCceEEEEEECCC------CC-e
Confidence            555555544554  55566666552  22 111222334578999 7877766554 44  355567765      32 2


Q ss_pred             eEeccCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                      ..+... .......|+|+|+.|+.+...++.  +.+++....                ....+..+.+.+...+|+|
T Consensus       387 ~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~----------------~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        387 QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR----------------FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----------------ceEECcCCCCCcCCCccCC
Confidence            333322 122345799999987766666665  556665431                1222334455677888887

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=5.3e-11  Score=119.37  Aligned_cols=201  Identities=15%  Similarity=0.170  Sum_probs=144.3

Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  278 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  278 (496)
                      |+.-.+.-+...++.+..+..+.+||............                               .+ ...    .
T Consensus        90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~-------------------------------~e-r~~----l  133 (967)
T KOG0974|consen   90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQS-------------------------------DE-RCT----L  133 (967)
T ss_pred             ccccchhhhcceEEEEEcCceEEEEecccCceehhcCC-------------------------------Cc-eEE----E
Confidence            34444555677888888899999999875432111100                               00 000    0


Q ss_pred             CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      ....-+.++++. -++++|+.-+.|.+|+......+.  .+.+|.+.|.++.|+- ++.++++.|.|.++|+|++.+.  
T Consensus       134 ~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn~p~--~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~--  207 (967)
T KOG0974|consen  134 YSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDNKPI--RLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSR--  207 (967)
T ss_pred             EeEEEEeccCcE-EEEEeccccccEEEEeccccCCcc--eecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccc--
Confidence            112223344544 689999999999999998544332  4679999999999999 9999999999999999999983  


Q ss_pred             CCCCCCce-EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC-CcceE
Q 010997          359 NGVGSPIN-KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-KVVDF  436 (496)
Q Consensus       359 ~~~~~~~~-~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~  436 (496)
                          +... ..-+|...|..+.|+|+  . ++|++.|.+.++|+....                .+....+|.. .|..+
T Consensus       208 ----~~~~~~~fgHsaRvw~~~~~~n--~-i~t~gedctcrvW~~~~~----------------~l~~y~~h~g~~iw~~  264 (967)
T KOG0974|consen  208 ----EVLGCTGFGHSARVWACCFLPN--R-IITVGEDCTCRVWGVNGT----------------QLEVYDEHSGKGIWKI  264 (967)
T ss_pred             ----cccCcccccccceeEEEEeccc--e-eEEeccceEEEEEecccc----------------eehhhhhhhhcceeEE
Confidence                3333 55679999999999999  3 579999999999976552                2234556654 68889


Q ss_pred             EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCc
Q 010997          437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY  472 (496)
Q Consensus       437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~  472 (496)
                      +..+.....+        |+|.|+.+++|++.....
T Consensus       265 ~~~~~~~~~v--------T~g~Ds~lk~~~l~~r~~  292 (967)
T KOG0974|consen  265 AVPIGVIIKV--------TGGNDSTLKLWDLNGRGL  292 (967)
T ss_pred             EEcCCceEEE--------eeccCcchhhhhhhcccc
Confidence            9888655544        677779999999975443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=4.9e-11  Score=119.66  Aligned_cols=194  Identities=19%  Similarity=0.306  Sum_probs=146.0

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      ....++.++.+..+.+||.............    ....+.     ....+.++++.-++++|+.-+.|.+|+.....  
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~----er~~l~-----~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn--  166 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSD----ERCTLY-----SSLIIGDSAEELYIASGSVFGEIIVWKPHEDN--  166 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCC----ceEEEE-----eEEEEeccCcEEEEEeccccccEEEEeccccC--
Confidence            5567788888889999998776322211100    000100     11123345556689999999999999986110  


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG  311 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~  311 (496)
                                                           .+ ..+.+|.+.|.++.|+-+| .+++++|+|.++++|++.+.
T Consensus       167 -------------------------------------~p-~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~  207 (967)
T KOG0974|consen  167 -------------------------------------KP-IRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSR  207 (967)
T ss_pred             -------------------------------------Cc-ceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccc
Confidence                                                 01 2578999999999999999 79999999999999999998


Q ss_pred             CccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC-CEEEEEEcCCCCCEEEE
Q 010997          312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-AVLCVQWSPDKSSVFGS  390 (496)
Q Consensus       312 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~i~~l~~sp~~~~llas  390 (496)
                      +.... ..-+|...|..+.|.| +  .++|++.|-+.++|+..       +..+..+.+|.. .|..++..+... +.+|
T Consensus       208 ~~~~~-~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~-------~~~l~~y~~h~g~~iw~~~~~~~~~-~~vT  275 (967)
T KOG0974|consen  208 EVLGC-TGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVN-------GTQLEVYDEHSGKGIWKIAVPIGVI-IKVT  275 (967)
T ss_pred             cccCc-ccccccceeEEEEecc-c--eeEEeccceEEEEEecc-------cceehhhhhhhhcceeEEEEcCCce-EEEe
Confidence            85432 3448999999999998 4  99999999999999766       366668888864 689999988776 6789


Q ss_pred             EeCCCcEEEEECCCCCc
Q 010997          391 SAEDGLLNIWDYEKVGK  407 (496)
Q Consensus       391 ~~~dg~i~iwd~~~~~~  407 (496)
                      ++.|+.+++||+...+.
T Consensus       276 ~g~Ds~lk~~~l~~r~~  292 (967)
T KOG0974|consen  276 GGNDSTLKLWDLNGRGL  292 (967)
T ss_pred             eccCcchhhhhhhcccc
Confidence            99999999999976543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=7.8e-10  Score=109.48  Aligned_cols=222  Identities=11%  Similarity=0.108  Sum_probs=132.0

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      ....+...+...+|+| +++.||..+.+   ..|.+||+.++..          +   .+....+ .+....|+|+|++|
T Consensus       193 ~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~----------~---~l~~~~g-~~~~~~~SpDG~~l  257 (430)
T PRK00178        193 TLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRR----------E---QITNFEG-LNGAPAWSPDGSKL  257 (430)
T ss_pred             EEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCE----------E---EccCCCC-CcCCeEECCCCCEE
Confidence            3446777889999999 77777665533   3699999987621          1   1111222 24578999999977


Q ss_pred             E-EecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          212 L-SGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       212 ~-sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      + +.+.+|  .|.+||+.++..                                         ..+..+........|+|
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~-----------------------------------------~~lt~~~~~~~~~~~sp  296 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQL-----------------------------------------SRVTNHPAIDTEPFWGK  296 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCe-----------------------------------------EEcccCCCCcCCeEECC
Confidence            6 555555  577778765422                                         22223334455678999


Q ss_pred             CCCceEEEEcCCC--eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-C--cEEEEeCCCCCCCCCCC
Q 010997          289 SSAQEFCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-N--SVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       289 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-g--~i~iwd~~~~~~~~~~~  363 (496)
                      ++..++++...+|  .|.++|+.+++.  .... ..........|+| ++..|+..+.+ +  .|.++|+.+      +.
T Consensus       297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~--~~lt-~~~~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~t------g~  366 (430)
T PRK00178        297 DGRTLYFTSDRGGKPQIYKVNVNGGRA--ERVT-FVGNYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQR------GS  366 (430)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCE--EEee-cCCCCccceEECC-CCCEEEEEEccCCceEEEEEECCC------CC
Confidence            9955555554444  466677766652  2111 1122334578999 88888766543 3  578889876      32


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                       ...+.. ........|+|+|+.++.+...++.  |.++++...                ....+..+.+.+...+|+|
T Consensus       367 -~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----------------~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        367 -VRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----------------VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             -EEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----------------ceEECcCCCCCcCCCccCC
Confidence             233322 2222356899999987766655544  555555431                1112223445677778887

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.31  E-value=1.3e-10  Score=102.68  Aligned_cols=203  Identities=14%  Similarity=0.174  Sum_probs=141.5

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      .+.+++++.|.+ ....|+.|-..|++.-+.+...-++.        ........|.. .|..+-|+-...++++.+.|.
T Consensus        67 mP~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm--------~~~r~~~~h~~-~v~~~if~~~~e~V~s~~~dk  136 (404)
T KOG1409|consen   67 MPSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKM--------TFLKDYLAHQA-RVSAIVFSLTHEWVLSTGKDK  136 (404)
T ss_pred             CCCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhc--------chhhhhhhhhc-ceeeEEecCCceeEEEecccc
Confidence            456789999998 78899999999999999876552221        33445667877 689999988888999999998


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCc--eeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGS--IIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      .+.---.+.+........ ..........  ....+.................++..+.+|.+.+.+++|.+.. .++.+
T Consensus       137 ~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfS  214 (404)
T KOG1409|consen  137 QFAWHCTESGNRLGGYNF-ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFS  214 (404)
T ss_pred             ceEEEeeccCCcccceEe-eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEe
Confidence            875443333321111000 0000001111  1112222222222222334556778899999999999999987 79999


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~  355 (496)
                      |..|..+.+||+-..+. ......+|...|..+..-+ .-..+.+++.||.|.+||+..
T Consensus       215 g~~d~~vi~wdigg~~g-~~~el~gh~~kV~~l~~~~-~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  215 GASDHSVIMWDIGGRKG-TAYELQGHNDKVQALSYAQ-HTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             ccccCceEEEeccCCcc-eeeeeccchhhhhhhhhhh-hheeeeeccCCCeEEEEeccc
Confidence            99999999999976653 3556678999999999888 678889999999999999875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=1e-10  Score=112.64  Aligned_cols=287  Identities=14%  Similarity=0.215  Sum_probs=188.4

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCC---CCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLG---ATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      +......|+.|.. +..++|+|+.||.++|-.+.+........+   ........++.||.. .|..+.|+.+.+.|-|.
T Consensus        12 PnnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-sV~vvTWNe~~QKLTtS   89 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-SVMVVTWNENNQKLTTS   89 (1189)
T ss_pred             CCCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-eEEEEEecccccccccc
Confidence            4455689999999 777999999999999999887643222111   223344568899998 68999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      ..+|.|.+|-+-.+.-...                                      -+-....+.|.+++|+.+| ..+
T Consensus        90 Dt~GlIiVWmlykgsW~EE--------------------------------------MiNnRnKSvV~SmsWn~dG-~kI  130 (1189)
T KOG2041|consen   90 DTSGLIIVWMLYKGSWCEE--------------------------------------MINNRNKSVVVSMSWNLDG-TKI  130 (1189)
T ss_pred             CCCceEEEEeeecccHHHH--------------------------------------HhhCcCccEEEEEEEcCCC-cEE
Confidence            9999999998865421100                                      0112345678999999999 788


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC-CCCCceE----ec
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-VGSPINK----FE  369 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~-~~~~~~~----~~  369 (496)
                      +..-.||.|.+=.+...+   +.-..-.......+.|++ +...++.+-.+|.++++|....-... ...+...    +.
T Consensus       131 cIvYeDGavIVGsvdGNR---IwgKeLkg~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s  206 (1189)
T KOG2041|consen  131 CIVYEDGAVIVGSVDGNR---IWGKELKGQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFS  206 (1189)
T ss_pred             EEEEccCCEEEEeeccce---ecchhcchheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeec
Confidence            889999999887775543   111111122345789999 88888888899999999976411000 0011011    11


Q ss_pred             cCCCCEEEEEEc--------CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          370 GHSAAVLCVQWS--------PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       370 ~h~~~i~~l~~s--------p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      .....|-.+.|.        |+.+ .||.+-..|.+.|-.-...             +...++. .|  ..|.+..|+++
T Consensus       207 ~~~~kia~i~w~~g~~~~v~pdrP-~lavcy~nGr~QiMR~eND-------------~~Pvv~d-tg--m~~vgakWnh~  269 (1189)
T KOG2041|consen  207 NFPTKIAEIEWNTGPYQPVPPDRP-RLAVCYANGRMQIMRSEND-------------PEPVVVD-TG--MKIVGAKWNHN  269 (1189)
T ss_pred             CCCccccceeeccCccccCCCCCC-EEEEEEcCceehhhhhcCC-------------CCCeEEe-cc--cEeecceecCC
Confidence            122235555553        4666 5788888998887654431             2222332 22  56889999998


Q ss_pred             CCcEEEEecCCCC--CCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997          442 DPWTVVSVSDDCD--STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  494 (496)
Q Consensus       442 ~~~l~~s~s~d~~--sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~  494 (496)
                      |.. +|.|+.|.+  .--.-+.|+++.+-       |..+.+|+....-|++++|
T Consensus       270 G~v-LAvcG~~~da~~~~d~n~v~Fysp~-------G~i~gtlkvpg~~It~lsW  316 (1189)
T KOG2041|consen  270 GAV-LAVCGNDSDADEPTDSNKVHFYSPY-------GHIVGTLKVPGSCITGLSW  316 (1189)
T ss_pred             CcE-EEEccCcccccCccccceEEEeccc-------hhheEEEecCCceeeeeEE
Confidence            865 555554421  11112467776654       7788888888888888877

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.25  E-value=4.5e-09  Score=102.98  Aligned_cols=205  Identities=12%  Similarity=0.147  Sum_probs=119.5

Q ss_pred             CCCceeEEEecCCCCc---EEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          139 HPGEVNRIRELPQNTK---IVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~---~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..+.+..-+|+| +++   ++++...+|  .|++.++.++..          +.+..+.+    .....+|+|||+.|+.
T Consensus       183 ~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~----------~~lt~~~g----~~~~p~wSPDG~~Laf  247 (428)
T PRK01029        183 EHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAG----------KKILALQG----NQLMPTFSPRKKLLAF  247 (428)
T ss_pred             CCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCc----------eEeecCCC----CccceEECCCCCEEEE
Confidence            445566779999 654   323444443  577778876621          22222222    2356899999998775


Q ss_pred             ec-CCC----cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          214 GG-KDK----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       214 g~-~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      .+ .+|    .+.+|++..+..                                     ..+......+.......+|+|
T Consensus       248 ~s~~~g~~di~~~~~~~~~g~~-------------------------------------g~~~~lt~~~~~~~~~p~wSP  290 (428)
T PRK01029        248 ISDRYGNPDLFIQSFSLETGAI-------------------------------------GKPRRLLNEAFGTQGNPSFSP  290 (428)
T ss_pred             EECCCCCcceeEEEeecccCCC-------------------------------------CcceEeecCCCCCcCCeEECC
Confidence            44 223    344455543210                                     011122222223345679999


Q ss_pred             CCCceEEEEcCCCeEEEEEccC--CCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---CcEEEEeCCCCCCCCCCC
Q 010997          289 SSAQEFCSVGDDSCLILWDARV--GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g~i~iwd~~~~~~~~~~~  363 (496)
                      +|..++++...+|...||.+..  ... ....+..+...+....|+| ++..|+..+.+   ..|.+||+..      +.
T Consensus       291 DG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~------g~  362 (428)
T PRK01029        291 DGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT------GR  362 (428)
T ss_pred             CCCEEEEEECCCCCceEEEEECccccc-ceEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC------CC
Confidence            9954455555567666665432  111 1223334445677899999 88888765543   3689999986      33


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeC--CCcEEEEECCC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEK  404 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~--dg~i~iwd~~~  404 (496)
                       ...+......+....|+|+|+.|+.++..  ...|.++|+..
T Consensus       363 -~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        363 -DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             -eEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence             34444334456789999999987656554  34677888866

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=3.6e-09  Score=99.37  Aligned_cols=302  Identities=16%  Similarity=0.208  Sum_probs=175.2

Q ss_pred             ccceEEEecCCCceeEEEecCCCCcEEEEEeCC-----------CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCc
Q 010997          130 FVKKHKTIIHPGEVNRIRELPQNTKIVATHTDS-----------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA  198 (496)
Q Consensus       130 ~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~  198 (496)
                      .+...+.+.|++ |.-+.||| +.+||+|-+..           ..++|||+.++......         ..+.+... .
T Consensus       240 ~f~r~~RF~Hp~-Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF---------~~~~~~~~-~  307 (698)
T KOG2314|consen  240 SFDRIQRFYHPG-VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF---------PVIKSPYL-K  307 (698)
T ss_pred             cHHHHHhccCCC-ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcce---------eccCCCcc-c
Confidence            455567788987 88899999 88999987652           37899999999433221         11111111 1


Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEecCCcccccc--CCccc---cccCCCCCceeccCCCCCC--CCCCCCCCCCcCCe
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA--TDPAT---AKSAGSSGSIIKQSPKPGD--GNDKAADGPSVGPR  271 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  271 (496)
                      -.-..||.|++|+|.-.. .+|.|++...-.....  .....   ......+..+....+....  ..+.+...++...+
T Consensus       308 WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i  386 (698)
T KOG2314|consen  308 WPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI  386 (698)
T ss_pred             cceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence            124689999999987665 5788888664211100  00000   1111112222222222221  22333344444444


Q ss_pred             eeeecCCCceeEEEEccCCCceEEE----------EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEE
Q 010997          272 GIYNGHEDTVEDVTFCPSSAQEFCS----------VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT  341 (496)
Q Consensus       272 ~~~~~h~~~v~~l~~~~~~~~~l~s----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s  341 (496)
                      ++-.-|.-.=..+-|-.+| .+|+.          .+.-..+-|+.++....|+...  .....|...+|.| .|+.+++
T Consensus       387 Rt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v--elke~vi~FaWEP-~gdkF~v  462 (698)
T KOG2314|consen  387 RTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV--ELKESVIAFAWEP-HGDKFAV  462 (698)
T ss_pred             eeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCCceee--ecchheeeeeecc-CCCeEEE
Confidence            3333222111233444455 34432          2223357788888777443332  4567899999999 6776665


Q ss_pred             EcC---CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEE--eCCCcEEEEECCCCCcccCCCCCCC
Q 010997          342 GSA---DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTT  416 (496)
Q Consensus       342 gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~--~~dg~i~iwd~~~~~~~~~~~~~~~  416 (496)
                      -+.   ..++.+|-+.+..  .....+..+.  ....+.+.|+|.|+++++.+  |..|.+.++|+.....         
T Consensus       463 i~g~~~k~tvsfY~~e~~~--~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~---------  529 (698)
T KOG2314|consen  463 ISGNTVKNTVSFYAVETNI--KKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL---------  529 (698)
T ss_pred             EEccccccceeEEEeecCC--Cchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhh---------
Confidence            443   3578999888521  1134445554  35668999999999765443  3478899999985211         


Q ss_pred             CCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          417 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       417 ~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                           .......|. ..+.+-|.|.|+|++.+.+.=  ....|+--+||++..
T Consensus       530 -----k~~~~~eh~-~at~veWDPtGRYvvT~ss~w--rhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  530 -----KDTASPEHF-AATEVEWDPTGRYVVTSSSSW--RHKVDNGYRIFTFQG  574 (698)
T ss_pred             -----hhccCcccc-ccccceECCCCCEEEEeeehh--hhccccceEEEEeec
Confidence                 111122333 357899999999987766544  566788899999984

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.25  E-value=2.3e-10  Score=99.85  Aligned_cols=254  Identities=15%  Similarity=0.197  Sum_probs=154.0

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC-----------CcceeeeecCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------NAEFALAMCPT  207 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~-----------~~v~~l~~~p~  207 (496)
                      ....|+++.|.. .|.+||+|...|.|.+|.-+...       ....+....+++|..           ..|..+.|..+
T Consensus        25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~-------~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~   96 (460)
T COG5170          25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSY-------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD   96 (460)
T ss_pred             ccceeeEEEecc-ccceEeecCCCceEEEeeccccc-------ccchhhhhhhcccccchhhhhhccHHHHhhheeeecC
Confidence            345689999987 88999999999999999876652       112234445566642           24778888876


Q ss_pred             CC--ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC------CCcCCeeee-ecCC
Q 010997          208 EP--YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG------PSVGPRGIY-NGHE  278 (496)
Q Consensus       208 ~~--~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~h~  278 (496)
                      +.  .++..+.|++|++|.+............-....    .....++..+...+.+...      ....+.+.+ ..|.
T Consensus        97 t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~----~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~  172 (460)
T COG5170          97 TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP  172 (460)
T ss_pred             CCcceEEEecCCceeeeeeeecccchhhhcccccccc----ccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence            43  456666799999999875422211111000000    0000000000000001000      112233444 5788


Q ss_pred             CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc-ceeeeccC-----CCCeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAH-----DADLHCVDWNPLDDNLILTGSADNSVRMFD  352 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~-----~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd  352 (496)
                      -.|+++.|+.+. ..++ .++|-.|.+|++.-.... .+...+.|     ..-|++..|+|...+.+.-.+..|.|++-|
T Consensus       173 yhiNSiS~NsD~-et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D  250 (460)
T COG5170         173 YHINSISFNSDK-ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND  250 (460)
T ss_pred             eEeeeeeecCch-heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence            889999999887 4444 457889999998765421 12222333     346889999998788999999999999999


Q ss_pred             CCCCCCCCCCC----------CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997          353 RRNLTSNGVGS----------PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  408 (496)
Q Consensus       353 ~~~~~~~~~~~----------~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~  408 (496)
                      +|+..--....          ...-+.+-...|..+.|+++|++++ +-+ --+|+|||++....+
T Consensus       251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRd-yltvkiwDvnm~k~p  314 (460)
T COG5170         251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRD-YLTVKIWDVNMAKNP  314 (460)
T ss_pred             hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eec-cceEEEEecccccCC
Confidence            99522100001          1111233456789999999999754 444 568999999875443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.23  E-value=9.4e-11  Score=113.24  Aligned_cols=267  Identities=19%  Similarity=0.331  Sum_probs=180.9

Q ss_pred             hhhhCcCCCCcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEE
Q 010997           57 WLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKT  136 (496)
Q Consensus        57 ~~~~~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (496)
                      ..++|...|-.-.++|.|.-...       .++-. +  +.+.. .||++..+..                  .-...-+
T Consensus        60 r~l~h~tpw~vad~qws~h~a~~-------~wiVs-t--s~qka-iiwnlA~ss~------------------~aIef~l  110 (1081)
T KOG0309|consen   60 RWLHHITPWQVADVQWSPHPAKP-------YWIVS-T--SNQKA-IIWNLAKSSS------------------NAIEFVL  110 (1081)
T ss_pred             eeeeccCcchhcceecccCCCCc-------eeEEe-c--Ccchh-hhhhhhcCCc------------------cceEEEE
Confidence            45678889999999998863322       11111 1  11222 2454432111                  1122345


Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      -+|..+|+.+.|.|+.+.++|+++.|-.+..||+....           .++.....-.. .-..++|+-....+++.+.
T Consensus       111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-----------~p~ys~~~w~s-~asqVkwnyk~p~vlassh  178 (1081)
T KOG0309|consen  111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-----------RPFYSTSSWRS-AASQVKWNYKDPNVLASSH  178 (1081)
T ss_pred             ecCccceeccccCCCCCcceeeccccccceeeeccCCC-----------cceeeeecccc-cCceeeecccCcchhhhcc
Confidence            68999999999999999999999999999999998762           44444443333 2478999987776777777


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      .+.|.+||.+.+.                                       .++..+++|...|+.+.|...-...+.+
T Consensus       179 g~~i~vwd~r~gs---------------------------------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s  219 (1081)
T KOG0309|consen  179 GNDIFVWDLRKGS---------------------------------------TPLCSLKGHVSSVNSIDFNRFKYSEIMS  219 (1081)
T ss_pred             CCceEEEeccCCC---------------------------------------cceEEecccceeeehHHHhhhhhhhhcc
Confidence            8899999998542                                       3457778899999999998765567999


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCC----CCCCCceEeccC
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSN----GVGSPINKFEGH  371 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~----~~~~~~~~~~~h  371 (496)
                      ++.|++|+.||........... .....+|..-.+-|+... ++.-.-.+..+.+++.++....    ...+++++|.||
T Consensus       220 ~~~d~tvkfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH  298 (1081)
T KOG0309|consen  220 SSNDGTVKFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH  298 (1081)
T ss_pred             cCCCCceeeeccccccccccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc
Confidence            9999999999998765322222 234556666677774332 2322222335555555443221    125789999999


Q ss_pred             CCCEEEEEEcCCC---------CCEEEEEeCCCcEEEEECCC
Q 010997          372 SAAVLCVQWSPDK---------SSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       372 ~~~i~~l~~sp~~---------~~llas~~~dg~i~iwd~~~  404 (496)
                      ...|....|-..+         .+-|+|-+.|..+++|-+..
T Consensus       299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            9999888876432         34578999999999998864

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.21  E-value=4.8e-10  Score=95.50  Aligned_cols=212  Identities=18%  Similarity=0.228  Sum_probs=126.3

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  222 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i  222 (496)
                      |..+.++.  ...|+++..++.+..+..................+...+..|++ +-.+-+.+--++.++++..||.+.+
T Consensus        39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~se-p~p~~~~s~~~t~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSE-IDPNDACTMTDNRVCIGYADGSLAV  115 (319)
T ss_pred             EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCC-CCCcccccccCCceEecCCCceEEE
Confidence            45555543  34677777777666665544322111111112244556665554 2233333445678999999999999


Q ss_pred             EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc----
Q 010997          223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG----  298 (496)
Q Consensus       223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----  298 (496)
                      .+.+.........+                                      ..|.+ -.+.+....+ +++.++.    
T Consensus       116 ~s~~~~~~~~~~i~--------------------------------------~~~~~-~as~~~~~~~-~~i~s~~~g~~  155 (319)
T KOG4714|consen  116 FSTDKDLALMSRIP--------------------------------------SIHSG-SASRKICRHG-NSILSGGCGNW  155 (319)
T ss_pred             EechHHHhhhhhcc--------------------------------------ccccc-ccccceeecc-cEEecCCcceE
Confidence            99875211000000                                      00111 1111222222 2222221    


Q ss_pred             -CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997          299 -DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  377 (496)
Q Consensus       299 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~  377 (496)
                       .-+..+.|+++..+. .... ......|.+++-+|...+++++|+.||.+-+||.|+..     .++..+..|+.+|..
T Consensus       156 n~~d~~~a~~~~p~~t-~~~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----~p~S~l~ahk~~i~e  228 (319)
T KOG4714|consen  156 NAQDNFYANTLDPIKT-LIPS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----MPVSLLKAHKAEIWE  228 (319)
T ss_pred             eeccceeeeccccccc-cccc-ccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-----chHHHHHHhhhhhhh
Confidence             223456677665442 1111 12234499999999777889999999999999999852     567778899999999


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      +-|+|..+.-|.++++||.+--||...
T Consensus       229 V~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  229 VHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeccCCCchheeEecCCCcEEEEcCCC
Confidence            999996544345999999999999874

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.17  E-value=2.6e-10  Score=99.48  Aligned_cols=223  Identities=16%  Similarity=0.256  Sum_probs=143.2

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      .|+++.|...|.||++|...|.|.++.-+......                                   .+....|.+|
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce-----------------------------------ykf~teFQsh   72 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE-----------------------------------YKFFTEFQSH   72 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeecccccccc-----------------------------------hhhhhhhccc
Confidence            68999999999999999999999999765432000                                   0000112222


Q ss_pred             ------------CCceeEEEEccC-CCceEEEEcCCCeEEEEEccCCC------------------c-------------
Q 010997          278 ------------EDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGT------------------S-------------  313 (496)
Q Consensus       278 ------------~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~------------------~-------------  313 (496)
                                  ...|..+.|..+ +...|+..+.|.+|++|-++...                  .             
T Consensus        73 e~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl  152 (460)
T COG5170          73 ELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL  152 (460)
T ss_pred             ccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc
Confidence                        245788888654 44578888899999999887541                  0             


Q ss_pred             ----------cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC-----CCEEEE
Q 010997          314 ----------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-----AAVLCV  378 (496)
Q Consensus       314 ----------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-----~~i~~l  378 (496)
                                |+.....+|...|+++.|+. +...++++ .|-.|.+|++.-....   -.+..++.|.     .-|++.
T Consensus       153 s~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~s---FnIVDiKP~nmeeLteVItSa  227 (460)
T COG5170         153 SEHDEIIAAKPCRVYANAHPYHINSISFNS-DKETLLSA-DDLRINLWNLEIIDGS---FNIVDIKPHNMEELTEVITSA  227 (460)
T ss_pred             cccceEEEeccceeccccceeEeeeeeecC-chheeeec-cceeeeeccccccCCc---eEEEeccCccHHHHHHHHhhc
Confidence                      11111246778899999998 67777665 6788999998875421   1122334443     468999


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCC-CCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997          379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  457 (496)
Q Consensus       379 ~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg  457 (496)
                      .|+|..-.+|.-.+..|.|++-|++....+........ ...+.-..-+.+-...|.++.|+++|++++ +-+.      
T Consensus       228 eFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIl-sRdy------  300 (460)
T COG5170         228 EFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYIL-SRDY------  300 (460)
T ss_pred             ccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEE-Eecc------
Confidence            99998777777788899999999985322211100000 000000111223345789999999887755 3222      


Q ss_pred             CCCeEEEeecCC
Q 010997          458 GGGTLQIWRMSD  469 (496)
Q Consensus       458 ~Dg~i~iw~~~~  469 (496)
                        .+|+|||++.
T Consensus       301 --ltvkiwDvnm  310 (460)
T COG5170         301 --LTVKIWDVNM  310 (460)
T ss_pred             --ceEEEEeccc
Confidence              6999999974

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=1.5e-10  Score=108.37  Aligned_cols=219  Identities=15%  Similarity=0.201  Sum_probs=151.5

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      ..-...+|+..|..++... +.+-+++++.|.+|++|.+......     .....+..+++.|+. +|..+.|-.+.+++
T Consensus       727 rL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~-----~~tsaCQfTY~aHkk-~i~~igfL~~lr~i  799 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDE-----IGTSACQFTYQAHKK-PIHDIGFLADLRSI  799 (1034)
T ss_pred             eeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCc-----cccceeeeEhhhccC-cccceeeeecccee
Confidence            3445679999999998777 7788999999999999999765322     123356778899998 79999999988888


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      +++  ||-|.+||.--+........                                   ..-.+-.+.|.++.- -+..
T Consensus       800 ~Sc--D~giHlWDPFigr~Laq~~d-----------------------------------apk~~a~~~ikcl~n-v~~~  841 (1034)
T KOG4190|consen  800 ASC--DGGIHLWDPFIGRLLAQMED-----------------------------------APKEGAGGNIKCLEN-VDRH  841 (1034)
T ss_pred             eec--cCcceeecccccchhHhhhc-----------------------------------CcccCCCceeEeccc-Ccch
Confidence            876  79999999754322110000                                   000111122333321 1222


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      -+++.|+...+|+++|.|.....+....   .+-...+.+++..+ .|+.+|.|-.+|+|.+.|.|+      +..+..+
T Consensus       842 iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~------G~vINsw  914 (1034)
T KOG4190|consen  842 ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN------GKVINSW  914 (1034)
T ss_pred             heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC------CceeccC
Confidence            3444457889999999998874333222   23446789999999 899999999999999999999      7878877


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEE-EECCC
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI-WDYEK  404 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~i-wd~~~  404 (496)
                      +........++- |..+ .++....|..+.+ |-...
T Consensus       915 rpmecdllqlaa-psdq-~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  915 RPMECDLLQLAA-PSDQ-ALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             CcccchhhhhcC-chhH-HHHhhcccceeEeeehhcC
Confidence            766665555553 4444 3566667888888 76544

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.16  E-value=1.6e-10  Score=121.72  Aligned_cols=187  Identities=20%  Similarity=0.342  Sum_probs=139.6

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      .|.++.-+|...+.+||+.||.|++|....+.......                                       ..-
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~r---------------------------------------t~g 2250 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFR---------------------------------------TAG 2250 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEee---------------------------------------ccC
Confidence            57888888989999999999999999876543221110                                       112


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc---CCCcEEEEeCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDRR  354 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs---~dg~i~iwd~~  354 (496)
                      ...|+.+.|+.+| +.+..+..||.+.+|... .+  .....+.|....+.+.|-.   ..+++++   .++.+.+||..
T Consensus      2251 ~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-pk--~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2251 NSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-PK--PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTL 2323 (2439)
T ss_pred             cchhhhhhhcccC-CceeeeccCCceeecccC-Cc--ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcc
Confidence            2778999999999 789999999999999987 22  4556678999999998863   6677765   46899999987


Q ss_pred             CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997          355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  434 (496)
Q Consensus       355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  434 (496)
                      .+..   ...++  ..|.+.++++++.|..+ +|.+||.+|.|++||++..               ++.     |.-.. 
T Consensus      2324 ~~~~---~s~v~--~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqr---------------ql~-----h~~~~- 2376 (2439)
T KOG1064|consen 2324 LPPM---NSLVH--TCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQR---------------QLR-----HTFQA- 2376 (2439)
T ss_pred             cCcc---cceee--eecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHH---------------HHH-----HHhhh-
Confidence            6431   23344  78999999999999988 6779999999999999874               121     11111 


Q ss_pred             eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          435 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       435 ~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                         ++ ...+++        +|+..|.++||+++.
T Consensus      2377 ---~~-~~~~f~--------~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2377 ---LD-TREYFV--------TGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             ---hh-hhheee--------ccCcccceEEEEccc
Confidence               44 344555        677779999999984

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.13  E-value=5.3e-08  Score=105.22  Aligned_cols=286  Identities=12%  Similarity=0.151  Sum_probs=154.8

Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCC-CCCCceEE-ecCCCCcceeeeecCCCCceEEec-CCCcE
Q 010997          144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGAT-NSRPDLIL-TGHQDNAEFALAMCPTEPYVLSGG-KDKSV  220 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~l-~~h~~~~v~~l~~~p~~~~l~sg~-~Dg~i  220 (496)
                      ..+++.+.++.++++-+.++.|++||....... ...+.. .....-.+ ..+-. .-.+++++++++.|+.+. ..+.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~-~ig~~g~~G~~dG~~~~a~f~-~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIV-QIGSTGEEGLRDGSFEDATFN-RPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEE-EEccCCCcCCCCCchhccccC-CCcEEEEeCCCCEEEEEeCCCceE
Confidence            356777767778888888899999998654110 000000 00000000 00111 136889999887655544 45789


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  300 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  300 (496)
                      +++|+.++........       +..           +  .............    -....+++++|++..++++.+.+
T Consensus       649 r~id~~~~~V~tlag~-------G~~-----------g--~~~~gg~~~~~~~----ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        649 REIDFVNETVRTLAGN-------GTK-----------G--SDYQGGKKGTSQV----LNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             EEEecCCCEEEEEecc-------Ccc-----------c--CCCCCChhhhHhh----cCCCeEEEEecCCCeEEEEECCC
Confidence            9999876432110000       000           0  0000000000000    11235889999655788888899


Q ss_pred             CeEEEEEccCCCccceeeecc---------------CCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCC----
Q 010997          301 SCLILWDARVGTSPVIKVEKA---------------HDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNG----  360 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~~~---------------~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~----  360 (496)
                      +.|++||...+..   ..+.+               .-.....|+++| ++. ++++-+.++.|++||+.+.....    
T Consensus       705 ~~I~v~d~~~g~v---~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg  780 (1057)
T PLN02919        705 HQIWEYNISDGVT---RVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGG  780 (1057)
T ss_pred             CeEEEEECCCCeE---EEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence            9999999876641   11111               112456799999 665 66667778999999988621000    


Q ss_pred             ---CCCCceEeccC--------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997          361 ---VGSPINKFEGH--------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  429 (496)
Q Consensus       361 ---~~~~~~~~~~h--------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h  429 (496)
                         ....+..+..+        -.....++++++|. ++++-..++.|++||.....................  ...+.
T Consensus       781 ~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~--~~~a~  857 (1057)
T PLN02919        781 DPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK--ALKAQ  857 (1057)
T ss_pred             ccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc--ccccc
Confidence               00000111101        11346899999997 777888899999999876311100000000000000  01122


Q ss_pred             CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          430 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       430 ~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      -.....++++++|. ++++-+.       +++|++||+...
T Consensus       858 l~~P~GIavd~dG~-lyVaDt~-------Nn~Irvid~~~~  890 (1057)
T PLN02919        858 LSEPAGLALGENGR-LFVADTN-------NSLIRYLDLNKG  890 (1057)
T ss_pred             cCCceEEEEeCCCC-EEEEECC-------CCEEEEEECCCC
Confidence            23567899999886 5554443       489999999743

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.11  E-value=2.3e-08  Score=85.86  Aligned_cols=226  Identities=11%  Similarity=0.067  Sum_probs=146.3

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCcccc
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      -.+||.|+..|...+|...+.+           ........|.. .|+-+.=.-+ .-.+..++.|.++++.+++.+...
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~-----------~h~~~cd~snn-~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~  151 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTND-----------GHLYQCDVSNN-DVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK  151 (344)
T ss_pred             ccEEEeccccceeeeecccCcc-----------cceeeeccccc-chhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence            3589999999999999998762           11122222222 1221111112 224677888999999988743211


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC--ceeEEEEccCCCceEEEEcCCCeEEEEEcc
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED--TVEDVTFCPSSAQEFCSVGDDSCLILWDAR  309 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  309 (496)
                                                                +..|..  .+.++.+++++ .++++.++...|..|.+.
T Consensus       152 ------------------------------------------~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id  188 (344)
T KOG4532|consen  152 ------------------------------------------FAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAID  188 (344)
T ss_pred             ------------------------------------------ceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeC
Confidence                                                      112222  37889999998 789999999999999987


Q ss_pred             CCCcccee-eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe----ccCCCCEEEEEEcCCC
Q 010997          310 VGTSPVIK-VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF----EGHSAAVLCVQWSPDK  384 (496)
Q Consensus       310 ~~~~~~~~-~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~i~~l~~sp~~  384 (496)
                      ....-... .....++.-.+..|+. ....+|+++.||++.|||+|.+.     .+....    ..|.+++..+.|++.|
T Consensus       189 ~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~-----tpm~~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  189 DESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMA-----TPMAEISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             CccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccc-----cchhhhcccCCCCCCceEEEEecCCC
Confidence            65532333 2334456667889998 88999999999999999999864     333322    3589999999999866


Q ss_pred             CC-EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC-CcceEEecCCCCcEEE
Q 010997          385 SS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD-KVVDFHWNASDPWTVV  447 (496)
Q Consensus       385 ~~-llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~~p~~~~l~~  447 (496)
                      .. ||.-.-.-+.+.+.|++.....+.....+     ..   ...|.. .|..-.|+.++....+
T Consensus       263 ~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~-----d~---~~~~~tq~ifgt~f~~~n~s~~v  319 (344)
T KOG4532|consen  263 LLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD-----DV---ERKHNTQHIFGTNFNNENESNDV  319 (344)
T ss_pred             cceEEEEecCcceEEEEEcccCceeeEEecCc-----cc---cccccccccccccccCCCccccc
Confidence            43 23233336789999999864433221111     11   122333 3777778777665554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.08  E-value=7.8e-08  Score=89.81  Aligned_cols=289  Identities=17%  Similarity=0.215  Sum_probs=163.7

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCC---------------cEEEEeCCCCCCccccCCCCCCCCceEEecCCCC-c
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSP---------------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-A  198 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~-~  198 (496)
                      ..+.|+ .|.-+.|+| ++++|.+-+..+               .+.|||+.++            ..+..+.+.... .
T Consensus        67 ~~~~~~-~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg------------~iv~sf~~~~q~~~  132 (561)
T COG5354          67 VRFRHP-DVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG------------MIVFSFNGISQPYL  132 (561)
T ss_pred             eeeecC-CceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCc------------eeEeeccccCCccc
Confidence            444555 488888999 888998877654               4899999988            334444443331 1


Q ss_pred             ce-eeeecCCCCceEEecCCCcEEEEecCCcccccc---CCcccc----ccCCCCCc-eeccCCC--CCCCCCCCCCCCC
Q 010997          199 EF-ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA---TDPATA----KSAGSSGS-IIKQSPK--PGDGNDKAADGPS  267 (496)
Q Consensus       199 v~-~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~---~~~~~~----~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~  267 (496)
                      .+ -+.|+-+.+|+|-- ....+.|+++........   ..+...    ....+... +..+.+.  ...+.+.++....
T Consensus       133 ~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~  211 (561)
T COG5354         133 GWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK  211 (561)
T ss_pred             ccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC
Confidence            33 67888888776644 245788998722211000   000000    01111111 1222221  1222333333333


Q ss_pred             cCCeeeeecCCCceeEEEEccCCCceEEEEc----------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG----------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN  337 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  337 (496)
                      ...+..-.-....=..+.|++.|..+++-.-          ....+.|++++....   .......++|..++|+| .+.
T Consensus       212 ~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V~~~~~~pVhdf~W~p-~S~  287 (561)
T COG5354         212 NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PVEKDLKDPVHDFTWEP-LSS  287 (561)
T ss_pred             CCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc---ceeccccccceeeeecc-cCC
Confidence            3222221111112235678888744333221          125688888885552   22225678999999999 555


Q ss_pred             EEEE--EcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCcccCCCC
Q 010997          338 LILT--GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGP  413 (496)
Q Consensus       338 ~l~s--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~  413 (496)
                      .|++  |-.+..+.++|++.       .....  .....=..+.|+|.++++|..|-.  .|.|-+||....        
T Consensus       288 ~F~vi~g~~pa~~s~~~lr~-------Nl~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r--------  350 (561)
T COG5354         288 RFAVISGYMPASVSVFDLRG-------NLRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR--------  350 (561)
T ss_pred             ceeEEecccccceeeccccc-------ceEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCc--------
Confidence            4443  45788999999996       43333  334555688899999987744432  477999998763        


Q ss_pred             CCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          414 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       414 ~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                            ..+...+.+-  ...-+.|+|++.++.......  ---.|+.|+|||+..
T Consensus       351 ------f~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~--k~~~Dn~i~l~~v~g  396 (561)
T COG5354         351 ------FKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSE--KLRVDNSIKLWDVYG  396 (561)
T ss_pred             ------eEEEEEeecC--CceEeeccCCceEEEecCCCc--ccccCcceEEEEecC
Confidence                  1222233332  345578999998877654322  223589999999984

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.03  E-value=8.6e-08  Score=82.37  Aligned_cols=200  Identities=9%  Similarity=0.019  Sum_probs=129.8

Q ss_pred             CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997          208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  287 (496)
Q Consensus       208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  287 (496)
                      -.+|+.|+.-|...+|...+.....                                       .....|...|+-+.=.
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~---------------------------------------~~cd~snn~v~~~~r~  124 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHL---------------------------------------YQCDVSNNDVTLVKRY  124 (344)
T ss_pred             ccEEEeccccceeeeecccCcccce---------------------------------------eeecccccchhhhhhh
Confidence            3489999999999999987543211                                       1122222222211111


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-  366 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-  366 (496)
                      .+....+..++.|.++++.++..+........  ..-.++++++++ ++.++++.+....|.+|.+....    ...+. 
T Consensus       125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~--~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~s----ey~~~~  197 (344)
T KOG4532|consen  125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN--QNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDES----EYIENI  197 (344)
T ss_pred             cccccceeeccCCcceeEEEEecCcccceeec--cccceeeeEEcC-CCceEEEecCCCcceEEEeCCcc----ceeeee
Confidence            12223466778888888888876552222111  113388999999 99999999999999999988743    22233 


Q ss_pred             EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997          367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~  446 (496)
                      ........=.+..|+.... .||++..||.+.|||++..+-+..          ....+...|.+.+..+.|++.|..=+
T Consensus       198 ~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~----------~~sstrp~hnGa~R~c~Fsl~g~lDL  266 (344)
T KOG4532|consen  198 YEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMA----------EISSTRPHHNGAFRVCRFSLYGLLDL  266 (344)
T ss_pred             EecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchh----------hhcccCCCCCCceEEEEecCCCcceE
Confidence            2233445557889998877 689999999999999998643221          11222345889999999998765433


Q ss_pred             EEecCCCCCCCCCCeEEEeecCCC
Q 010997          447 VSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      .-.++.      -+.+.+-|+++.
T Consensus       267 Lf~sEh------fs~~hv~D~R~~  284 (344)
T KOG4532|consen  267 LFISEH------FSRVHVVDTRNY  284 (344)
T ss_pred             EEEecC------cceEEEEEcccC
Confidence            333333      278899998854

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.02  E-value=5.8e-07  Score=85.98  Aligned_cols=240  Identities=10%  Similarity=0.150  Sum_probs=145.1

Q ss_pred             CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC----CCcEEEEecCCccccccCCccc
Q 010997          163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK----DKSVVLWSIQDHITSSATDPAT  238 (496)
Q Consensus       163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~----Dg~i~iwd~~~~~~~~~~~~~~  238 (496)
                      +.|++|++......        .........-.  ....|+++|++++|.++..    ++.|..|++.....        
T Consensus        13 ~gI~~~~~d~~~g~--------l~~~~~~~~~~--~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g--------   74 (345)
T PF10282_consen   13 GGIYVFRFDEETGT--------LTLVQTVAEGE--NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG--------   74 (345)
T ss_dssp             TEEEEEEEETTTTE--------EEEEEEEEESS--SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT--------
T ss_pred             CcEEEEEEcCCCCC--------ceEeeeecCCC--CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc--------
Confidence            68999988443111        11122222222  2367899999998888765    57999998874210        


Q ss_pred             cccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcccee-
Q 010997          239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-  317 (496)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-  317 (496)
                                                  ....+............++++|++..++++.-.+|.|.++++......... 
T Consensus        75 ----------------------------~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~  126 (345)
T PF10282_consen   75 ----------------------------TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV  126 (345)
T ss_dssp             ----------------------------EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred             ----------------------------eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence                                        111122222233455678999999555555567999999999874311111 


Q ss_pred             -ee----------ccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCC--ceEec-cCCCCEEEEEEcC
Q 010997          318 -VE----------KAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSP--INKFE-GHSAAVLCVQWSP  382 (496)
Q Consensus       318 -~~----------~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~--~~~~~-~h~~~i~~l~~sp  382 (496)
                       ..          ........++.|+| +++++++.. ....|.+|++....    +..  ...+. ........++|+|
T Consensus       127 ~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~----~~l~~~~~~~~~~G~GPRh~~f~p  201 (345)
T PF10282_consen  127 QTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDT----GKLTPVDSIKVPPGSGPRHLAFSP  201 (345)
T ss_dssp             EEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-----TEEEEEEEECSTTSSEEEEEE-T
T ss_pred             eecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCC----ceEEEeeccccccCCCCcEEEEcC
Confidence             11          01235678999999 887766653 34589999998732    111  12222 3455688999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec-CC--CCCcceEEecCCCCcEEEEecCCCCCCCCC
Q 010997          383 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGG  459 (496)
Q Consensus       383 ~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h--~~~V~~~~~~p~~~~l~~s~s~d~~sgg~D  459 (496)
                      ++++++++.-.++.|.++++........        ..+.+..+. +.  ......++++|++++++++....       
T Consensus       202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~-------  266 (345)
T PF10282_consen  202 DGKYAYVVNELSNTVSVFDYDPSDGSLT--------EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS-------  266 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEEE--------EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT-------
T ss_pred             CcCEEEEecCCCCcEEEEeecccCCcee--------EEEEeeeccccccccCCceeEEEecCCCEEEEEeccC-------
Confidence            9999888888899999999983111110        001111111 11  12567899999999999876554       


Q ss_pred             CeEEEeecC
Q 010997          460 GTLQIWRMS  468 (496)
Q Consensus       460 g~i~iw~~~  468 (496)
                      ++|.+|++.
T Consensus       267 ~sI~vf~~d  275 (345)
T PF10282_consen  267 NSISVFDLD  275 (345)
T ss_dssp             TEEEEEEEC
T ss_pred             CEEEEEEEe
Confidence            899999995

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.00  E-value=2.7e-07  Score=98.01  Aligned_cols=245  Identities=14%  Similarity=0.258  Sum_probs=139.2

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      ..+.|..+.|.+ +...++.+..+|.|.+........          ......-|.-+..|.+++||||+..|+....++
T Consensus        74 ~~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~----------~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~  142 (928)
T PF04762_consen   74 PNDKIVSFQYLA-DSESLCIALASGDIILVREDPDPD----------EDEIEIVGSVDSGILAASWSPDEELLALVTGEG  142 (928)
T ss_pred             CCCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCC----------CceeEEEEEEcCcEEEEEECCCcCEEEEEeCCC
Confidence            457899999999 777788888999999993322100          112234444445799999999999999888899


Q ss_pred             cEEEEecCCc----cccccCCcc---ccccCCCCCceeccCCCCCCCCCCCCCCCCc-CCeeeeecCCCceeEEEEccCC
Q 010997          219 SVVLWSIQDH----ITSSATDPA---TAKSAGSSGSIIKQSPKPGDGNDKAADGPSV-GPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       219 ~i~iwd~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      +|.+-+-.=.    .........   .....-|.....+.+.......-...+.... .....+. +.+.-..|+|-.||
T Consensus       143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG  221 (928)
T PF04762_consen  143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG  221 (928)
T ss_pred             EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC
Confidence            9888653210    000000000   0000000000000000000000000000000 0012233 45566789999999


Q ss_pred             CceEEEEcC---C---CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC---CCcEEEEeCCCCCCCCC
Q 010997          291 AQEFCSVGD---D---SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDRRNLTSNGV  361 (496)
Q Consensus       291 ~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~---dg~i~iwd~~~~~~~~~  361 (496)
                       .+||+.+.   .   ..|+||+-. +.  ...+...-.+--.+++|-| +|++||+...   ...|.+|.-+-+..   
T Consensus       222 -~yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLrh---  293 (928)
T PF04762_consen  222 -EYFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVFFERNGLRH---  293 (928)
T ss_pred             -cEEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEEEecCCcEe---
Confidence             67777664   3   579999854 44  3333333333345789999 9999998765   34577776553221   


Q ss_pred             CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +.....+......|..++|++++. +||..-.|. |.+|-....
T Consensus       294 geF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NY  335 (928)
T PF04762_consen  294 GEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNY  335 (928)
T ss_pred             eeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCC
Confidence            111112223466899999999998 677766554 999998763

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.00  E-value=1.3e-06  Score=81.74  Aligned_cols=247  Identities=10%  Similarity=0.053  Sum_probs=137.2

Q ss_pred             ecCCCCcEEEEEe---------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC------CcceeeeecCCCCceE
Q 010997          148 ELPQNTKIVATHT---------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD------NAEFALAMCPTEPYVL  212 (496)
Q Consensus       148 ~~p~~~~~lat~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~------~~v~~l~~~p~~~~l~  212 (496)
                      ++|+...+.++.+         .+..|.+||..+..            ....+.-..+      .....++++|+|++|+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~------------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~  120 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL------------PIADIELPEGPRFLVGTYPWMTSLTPDNKTLL  120 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc------------EEeEEccCCCchhhccCccceEEECCCCCEEE
Confidence            7894444444455         57899999999983            3333322111      1124789999999888


Q ss_pred             Eec-C-CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          213 SGG-K-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       213 sg~-~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      ... . +..|.+.|+.+++.......                               ..+...+..  ..-..+..+.|+
T Consensus       121 V~n~~p~~~V~VvD~~~~kvv~ei~v-------------------------------p~~~~vy~t--~e~~~~~~~~Dg  167 (352)
T TIGR02658       121 FYQFSPSPAVGVVDLEGKAFVRMMDV-------------------------------PDCYHIFPT--ANDTFFMHCRDG  167 (352)
T ss_pred             EecCCCCCEEEEEECCCCcEEEEEeC-------------------------------CCCcEEEEe--cCCccEEEeecC
Confidence            665 3 78999999987654322111                               000111111  111222333444


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeecc-----CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKA-----HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  365 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  365 (496)
                      ....++-..+|....=..        ..+..     ...+    .|.+.++.++.+... |.|.+.|+....... ...+
T Consensus       168 ~~~~v~~d~~g~~~~~~~--------~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~-~~~~  233 (352)
T TIGR02658       168 SLAKVGYGTKGNPKIKPT--------EVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF-LPAI  233 (352)
T ss_pred             ceEEEEecCCCceEEeee--------eeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCccee-ccee
Confidence            333344444444321110        01101     0111    334436666666655 999999975422100 1222


Q ss_pred             eEec-------cCCCCEEEEEEcCCCCCEEEEEe---------CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997          366 NKFE-------GHSAAVLCVQWSPDKSSVFGSSA---------EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  429 (496)
Q Consensus       366 ~~~~-------~h~~~i~~l~~sp~~~~llas~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h  429 (496)
                      ..+.       ...+.+.-++++|++..+++...         ..+.|.++|..+.               +.+....- 
T Consensus       234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------------kvi~~i~v-  297 (352)
T TIGR02658       234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------------KRLRKIEL-  297 (352)
T ss_pred             eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------------eEEEEEeC-
Confidence            2221       12344556999999998886442         1257999998874               33333221 


Q ss_pred             CCCcceEEecCCCC-cEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH
Q 010997          430 RDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  482 (496)
Q Consensus       430 ~~~V~~~~~~p~~~-~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l  482 (496)
                      ...+..++++|++. .++++..       .++.|.+.|..      +++.++++
T Consensus       298 G~~~~~iavS~Dgkp~lyvtn~-------~s~~VsViD~~------t~k~i~~i  338 (352)
T TIGR02658       298 GHEIDSINVSQDAKPLLYALST-------GDKTLYIFDAE------TGKELSSV  338 (352)
T ss_pred             CCceeeEEECCCCCeEEEEeCC-------CCCcEEEEECc------CCeEEeee
Confidence            23688999999998 6665432       35889999998      56666555

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=2.7e-09  Score=94.60  Aligned_cols=123  Identities=13%  Similarity=0.225  Sum_probs=95.3

Q ss_pred             CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc---cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 010997          277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS---PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  353 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~  353 (496)
                      .++.|.+++|+..+ ++++.|+.+|.|..+|+|.+..   -+...+ -|.+.|+++..-..++++|++.+.+|.|++||+
T Consensus       251 sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~  328 (425)
T KOG2695|consen  251 SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL  328 (425)
T ss_pred             cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence            45778999998877 7999999999999999998721   122333 589999999887768899999999999999999


Q ss_pred             CCCCCCCCCCCceEeccCCCCEEEEEE--cCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          354 RNLTSNGVGSPINKFEGHSAAVLCVQW--SPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~--sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      |..+.   +.-+.++.+|...-.-+-+  .+... +++++++|...+||.+..+
T Consensus       329 R~~K~---~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~g  378 (425)
T KOG2695|consen  329 RATKC---KKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSG  378 (425)
T ss_pred             hhhhc---ccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccC
Confidence            98331   2338889998765444333  44555 4557999999999999974

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=1.1e-07  Score=93.22  Aligned_cols=251  Identities=16%  Similarity=0.146  Sum_probs=170.4

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC----------
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE----------  208 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~----------  208 (496)
                      |...-+++.|+| .| +||-|+.. .|.|-|..+.            +.+..+.-|.. .|+.+.|.|-.          
T Consensus        14 ~~sN~~A~Dw~~-~G-LiAygshs-lV~VVDs~s~------------q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~   77 (1062)
T KOG1912|consen   14 SRSNRNAADWSP-SG-LIAYGSHS-LVSVVDSRSL------------QLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSS   77 (1062)
T ss_pred             CcccccccccCc-cc-eEEEecCc-eEEEEehhhh------------hhhhccccCcc-ceeEEEeccCCCchhccCccc
Confidence            334467788888 54 77777765 7888888776            66677888886 79999998732          


Q ss_pred             --CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997          209 --PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       209 --~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  286 (496)
                        -+|+++...|.|.+||...+..                                        +..+..|.+++.+++|
T Consensus        78 ~~lliAsaD~~GrIil~d~~~~s~----------------------------------------~~~l~~~~~~~qdl~W  117 (1062)
T KOG1912|consen   78 SQLLIASADISGRIILVDFVLASV----------------------------------------INWLSHSNDSVQDLCW  117 (1062)
T ss_pred             cceeEEeccccCcEEEEEehhhhh----------------------------------------hhhhcCCCcchhheee
Confidence              2577888899999999875432                                        1345668889999999


Q ss_pred             ccC---CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC-CC
Q 010997          287 CPS---SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-VG  362 (496)
Q Consensus       287 ~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~-~~  362 (496)
                      -+.   ...+|++-....+|.+|+..+++  .............|+.+.|++...+..-+..|.+.+-+.-..+.+. .+
T Consensus       118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG~--k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg  195 (1062)
T KOG1912|consen  118 VPARDDSRDVLLAIHGSSTLVLWNTDTGE--KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG  195 (1062)
T ss_pred             eeccCcchheeEEecCCcEEEEEEccCCc--eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence            763   33578888888999999999988  4444445556778899999999888888888988887765433322 12


Q ss_pred             CCceEeccCCC------------C-------------EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCC
Q 010997          363 SPINKFEGHSA------------A-------------VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  417 (496)
Q Consensus       363 ~~~~~~~~h~~------------~-------------i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~  417 (496)
                      +.++.-..|..            .             ...++|+|.-++++ -....+.+.|+|+.-.            
T Consensus       196 k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l-fi~~prellv~dle~~------------  262 (1062)
T KOG1912|consen  196 KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL-FITFPRELLVFDLEYE------------  262 (1062)
T ss_pred             eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE-EEEeccceEEEcchhh------------
Confidence            22222122221            0             12467888877655 3334778999999874            


Q ss_pred             CCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          418 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       418 ~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                         ..+....-..+.+.-+.|-|+...=+.-      ++-.||.+.||--..
T Consensus       263 ---~~l~vvpier~~akfv~vlP~~~rd~Lf------clH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  263 ---CCLAVVPIERGGAKFVDVLPDPRRDALF------CLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ---ceeEEEEeccCCcceeEeccCCCcceEE------EEecCCeEEEEEeec
Confidence               3444444445566677787775432222      334469999997663

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=1.6e-07  Score=88.65  Aligned_cols=279  Identities=14%  Similarity=0.210  Sum_probs=162.2

Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC-------
Q 010997          144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-------  216 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-------  216 (496)
                      +-++||| .|.||+|--..| |.+|--.+-.            ....+ .|.+  |.-+.|||..+||+|=+.       
T Consensus       214 tyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~------------r~~RF-~Hp~--Vq~idfSP~EkYLVT~s~~p~~~~~  276 (698)
T KOG2314|consen  214 TYVRWSP-KGTYLVTFHKQG-IALWGGESFD------------RIQRF-YHPG--VQFIDFSPNEKYLVTYSPEPIIVEE  276 (698)
T ss_pred             eeEEecC-CceEEEEEeccc-eeeecCccHH------------HHHhc-cCCC--ceeeecCCccceEEEecCCccccCc
Confidence            5789999 899999987664 8889755441            11222 3554  789999999999998653       


Q ss_pred             ----CCcEEEEecCCccccccCCccccccCCCCCceeccCC------CCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997          217 ----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP------KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       217 ----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  286 (496)
                          ...++|||+.++.....+...  ........+...+.      .....++.++..+...++..-.-.-..|.+..|
T Consensus       277 ~d~e~~~l~IWDI~tG~lkrsF~~~--~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsw  354 (698)
T KOG2314|consen  277 DDNEGQQLIIWDIATGLLKRSFPVI--KSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSW  354 (698)
T ss_pred             ccCCCceEEEEEccccchhcceecc--CCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCccc
Confidence                258999999998654333221  01111111111111      112233444444443333222223467888999


Q ss_pred             ccCCCceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE----------cCCCcEEEE
Q 010997          287 CPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG----------SADNSVRMF  351 (496)
Q Consensus       287 ~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg----------s~dg~i~iw  351 (496)
                      +|.+ ++||--...     ..+.|-.+.+++  .+++..-+.-.=..+-|-. +|.+|+.-          +.-..+-|+
T Consensus       355 sP~~-~llAYwtpe~~~~parvtL~evPs~~--~iRt~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIf  430 (698)
T KOG2314|consen  355 SPTS-NLLAYWTPETNNIPARVTLMEVPSKR--EIRTKNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIF  430 (698)
T ss_pred             CCCc-ceEEEEcccccCCcceEEEEecCccc--eeeeccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEE
Confidence            9987 666654321     234454444443  2333222222223345555 56666542          222346677


Q ss_pred             eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997          352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  429 (496)
Q Consensus       352 d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h  429 (496)
                      .++...     -++.... -...|...+|-|.|..+.+..+.  -.++.+|-+....           ..+.++..+.. 
T Consensus       431 rireKd-----Ipve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-----------~~~~lVk~~dk-  492 (698)
T KOG2314|consen  431 RIREKD-----IPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-----------KKPSLVKELDK-  492 (698)
T ss_pred             EeeccC-----CCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-----------Cchhhhhhhcc-
Confidence            777621     3444443 56789999999999864333333  3568888887421           22234433332 


Q ss_pred             CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          430 RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       430 ~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                       ...+.+.|+|.|+++++.+     -+|..|.+.++|+..
T Consensus       493 -~~~N~vfwsPkG~fvvva~-----l~s~~g~l~F~D~~~  526 (698)
T KOG2314|consen  493 -KFANTVFWSPKGRFVVVAA-----LVSRRGDLEFYDTDY  526 (698)
T ss_pred             -cccceEEEcCCCcEEEEEE-----ecccccceEEEecch
Confidence             3467899999999877655     345679999999983

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=1.9e-07  Score=88.26  Aligned_cols=207  Identities=19%  Similarity=0.285  Sum_probs=131.0

Q ss_pred             ceEEEecCCCceeEEEecCC-CCcEEEE-----EeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec
Q 010997          132 KKHKTIIHPGEVNRIRELPQ-NTKIVAT-----HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC  205 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~-~~~~lat-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~  205 (496)
                      +.....-|...|+.+.++|. ....+|+     ++.-+.|+||.+.... ...      .....++--  ... -.+.|+
T Consensus       157 ~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~-~~~------~~a~ksFFk--adk-vqm~WN  226 (566)
T KOG2315|consen  157 KTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG-QHQ------PVANKSFFK--ADK-VQMKWN  226 (566)
T ss_pred             cceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc-ccc------hhhhccccc--cce-eEEEec
Confidence            33334456788999999994 3445553     3455689999987321 110      011111111  112 368898


Q ss_pred             CCCC-ce--EEecCCC---------cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997          206 PTEP-YV--LSGGKDK---------SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  273 (496)
Q Consensus       206 p~~~-~l--~sg~~Dg---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (496)
                      +-|+ +|  ++...|+         ++.+.+++...+                                         ..
T Consensus       227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~-----------------------------------------~V  265 (566)
T KOG2315|consen  227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV-----------------------------------------SV  265 (566)
T ss_pred             cCCceEEEEEEEeecCCCccccccceEEEEEecCceE-----------------------------------------EE
Confidence            8776 22  2333333         344444431111                                         11


Q ss_pred             eecCCCceeEEEEccCCCceEEE--EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---CcE
Q 010997          274 YNGHEDTVEDVTFCPSSAQEFCS--VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSV  348 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g~i  348 (496)
                      --...++|.++.|+|.+ ..|+.  |-.=-.+.|||++..-   +..  -.+++=+++-|+| .+++++.++-+   |.|
T Consensus       266 ~L~k~GPVhdv~W~~s~-~EF~VvyGfMPAkvtifnlr~~~---v~d--f~egpRN~~~fnp-~g~ii~lAGFGNL~G~m  338 (566)
T KOG2315|consen  266 PLLKEGPVHDVTWSPSG-REFAVVYGFMPAKVTIFNLRGKP---VFD--FPEGPRNTAFFNP-HGNIILLAGFGNLPGDM  338 (566)
T ss_pred             ecCCCCCceEEEECCCC-CEEEEEEecccceEEEEcCCCCE---eEe--CCCCCccceEECC-CCCEEEEeecCCCCCce
Confidence            11246899999999999 44444  3455689999987533   333  3467779999999 88888887754   899


Q ss_pred             EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC-----CCcEEEEECCC
Q 010997          349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGLLNIWDYEK  404 (496)
Q Consensus       349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~-----dg~i~iwd~~~  404 (496)
                      -+||..+      .+.+..+....  -+-+.|+|+|++++.+...     |+.++||+...
T Consensus       339 EvwDv~n------~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  339 EVWDVPN------RKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EEEeccc------hhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            9999998      57777776533  4568999999987633333     88899999976

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.92  E-value=2.9e-08  Score=90.07  Aligned_cols=166  Identities=17%  Similarity=0.207  Sum_probs=114.1

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe---cCCC
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG---GKDK  218 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg---~~Dg  218 (496)
                      .+..+.++| .+.+||.+..+....++++.....        ..++.........  -+++.|..+......+   +...
T Consensus        64 a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~--------~~kl~~~~~v~~~--~~ai~~~~~~~sv~v~dkagD~~  132 (390)
T KOG3914|consen   64 APALVLTSD-SGRLVAVATSSKQRAVFDYRENPK--------GAKLLDVSCVPKR--PTAISFIREDTSVLVADKAGDVY  132 (390)
T ss_pred             cccccccCC-CceEEEEEeCCCceEEEEEecCCC--------cceeeeEeecccC--cceeeeeeccceEEEEeecCCce
Confidence            344555666 889999999988888888876632        1123333333332  2455555444433333   3344


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .+.+|....+                                         ....+.+|-..+++|+|+||+ .+++++.
T Consensus       133 ~~di~s~~~~-----------------------------------------~~~~~lGhvSml~dVavS~D~-~~IitaD  170 (390)
T KOG3914|consen  133 SFDILSADSG-----------------------------------------RCEPILGHVSMLLDVAVSPDD-QFIITAD  170 (390)
T ss_pred             eeeeeccccc-----------------------------------------CcchhhhhhhhhheeeecCCC-CEEEEec
Confidence            4445544321                                         114456899999999999999 8999999


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      .|..|++-....... ......+|..-|..++.-+  ++.|++||.|++|++||+++      ++.++++.
T Consensus       171 RDEkIRvs~ypa~f~-IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s------gk~L~t~d  232 (390)
T KOG3914|consen  171 RDEKIRVSRYPATFV-IESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS------GKLLDTCD  232 (390)
T ss_pred             CCceEEEEecCcccc-hhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc------CCcccccc
Confidence            999999987765441 2223458999999999986  56799999999999999999      77777664

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.92  E-value=1.2e-09  Score=104.51  Aligned_cols=247  Identities=15%  Similarity=0.268  Sum_probs=156.2

Q ss_pred             CCCceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEec-
Q 010997          139 HPGEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGG-  215 (496)
Q Consensus       139 h~~~V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~-  215 (496)
                      -...+.|+++.-. +..+++.|..+|.|.+-.+......          .-....+|.. ..++++|++- .+.||.|- 
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----------s~E~tp~~ar-~Ct~lAwneLDtn~LAagld  123 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----------SAEVTPGYAR-PCTSLAWNELDTNHLAAGLD  123 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc----------cceecccccc-cccccccccccHHHHHhhhh
Confidence            3445777776553 3468999999999999887655211          1123345554 6899999985 45677663 


Q ss_pred             ---CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCC
Q 010997          216 ---KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSA  291 (496)
Q Consensus       216 ---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~  291 (496)
                         .|..+.|||+.+....    |...                                ..+. +......+++|-.+. 
T Consensus       124 khrnds~~~Iwdi~s~ltv----Pke~--------------------------------~~fs~~~l~gqns~cwlrd~-  166 (783)
T KOG1008|consen  124 KHRNDSSLKIWDINSLLTV----PKES--------------------------------PLFSSSTLDGQNSVCWLRDT-  166 (783)
T ss_pred             hhcccCCccceecccccCC----Cccc--------------------------------cccccccccCccccccccCc-
Confidence               4678999999865321    1000                                0111 123445588898766 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEe-CCCCCCCCCCCCceEecc
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-RRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd-~~~~~~~~~~~~~~~~~~  370 (496)
                      .++++|.....++++|+|...   .......+..+..+..+|..++++++-. ||.|.+|| .++.+     .++..+..
T Consensus       167 klvlaGm~sr~~~ifdlRqs~---~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie-----npl~~i~~  237 (783)
T KOG1008|consen  167 KLVLAGMTSRSVHIFDLRQSL---DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE-----NPLQIILR  237 (783)
T ss_pred             chhhcccccchhhhhhhhhhh---hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhc-----cHHHHHhh
Confidence            788999999999999999543   1122234456677888998889988876 99999999 55532     34444432


Q ss_pred             CC----CCEEEEEEcCCCCCEEEEEeCC-CcEEEEECCCCCcccCCCCCCC-CCCCeeEEEecCCCCCcceEEecCCC
Q 010997          371 HS----AAVLCVQWSPDKSSVFGSSAED-GLLNIWDYEKVGKKVEQGPRTT-NYPAGLFFQHAGHRDKVVDFHWNASD  442 (496)
Q Consensus       371 h~----~~i~~l~~sp~~~~llas~~~d-g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~V~~~~~~p~~  442 (496)
                      ..    ..+..++|+|....++++...| ++|+++|+...+.+........ ......-+++.+..+.|..+.||+..
T Consensus       238 ~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s  315 (783)
T KOG1008|consen  238 NENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTAS  315 (783)
T ss_pred             CCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCC
Confidence            22    2489999999877777777664 7899999977533222111100 00001112334445678888888765

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.91  E-value=9.9e-09  Score=87.64  Aligned_cols=220  Identities=14%  Similarity=0.223  Sum_probs=127.2

Q ss_pred             EecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997          191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  270 (496)
Q Consensus       191 l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (496)
                      ..+|.+-.+..+.+..+ ..|+++..++.+......++.+......                            .....+
T Consensus        31 i~~~~d~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~r----------------------------t~~i~~   81 (319)
T KOG4714|consen   31 IMQHADVKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWER----------------------------DDGIDP   81 (319)
T ss_pred             cccccceEEEEeechhh-heeecccchhheeeeccceEEEechhhc----------------------------ccCcCc
Confidence            34444433555555433 3567777777777766554433211111                            011223


Q ss_pred             eeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-----C
Q 010997          271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-----D  345 (496)
Q Consensus       271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-----d  345 (496)
                      ...+..|+++-.+-..+-.+ +.++++..||.+.+++.+.... ...........--+.+... .++.+.++..     -
T Consensus        82 ~~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~~-~~~~i~~~~~~~as~~~~~-~~~~i~s~~~g~~n~~  158 (319)
T KOG4714|consen   82 FKVLAKNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDLA-LMSRIPSIHSGSASRKICR-HGNSILSGGCGNWNAQ  158 (319)
T ss_pred             eeeeeccCCCCCcccccccC-CceEecCCCceEEEEechHHHh-hhhhcccccccccccceee-cccEEecCCcceEeec
Confidence            34444444433222222233 5699999999999999876321 1111111111111222222 3444444332     2


Q ss_pred             CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  425 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  425 (496)
                      +..+.|+++..+     ..+.... ....|++++-+|..++++++|+.||.+.+||.+...              .+...
T Consensus       159 d~~~a~~~~p~~-----t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--------------~p~S~  218 (319)
T KOG4714|consen  159 DNFYANTLDPIK-----TLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--------------MPVSL  218 (319)
T ss_pred             cceeeecccccc-----ccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEccccc--------------chHHH
Confidence            345566666422     1111111 223499999999999999999999999999998851              22334


Q ss_pred             ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      +..|..+|+.+.|+|..+--+.++++|       |.+.-||-+.
T Consensus       219 l~ahk~~i~eV~FHpk~p~~Lft~sed-------Gslw~wdas~  255 (319)
T KOG4714|consen  219 LKAHKAEIWEVHFHPKNPEHLFTCSED-------GSLWHWDAST  255 (319)
T ss_pred             HHHhhhhhhheeccCCCchheeEecCC-------CcEEEEcCCC
Confidence            578999999999999987777777766       9999999873

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.90  E-value=4.2e-07  Score=98.34  Aligned_cols=224  Identities=12%  Similarity=0.179  Sum_probs=133.3

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec------C-CCCcceeeeecC-CCCceEEe
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG------H-QDNAEFALAMCP-TEPYVLSG  214 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~------h-~~~~v~~l~~~p-~~~~l~sg  214 (496)
                      ...+++.++++.++++-.....|+++|+.++... .+.+..  .....+.+      . -. .-+.++++| ++..+++.
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G--~~g~~~~gg~~~~~~~ln-~P~gVa~dp~~g~LyVad  701 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNG--TKGSDYQGGKKGTSQVLN-SPWDVCFEPVNEKVYIAM  701 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccC--cccCCCCCChhhhHhhcC-CCeEEEEecCCCeEEEEE
Confidence            4678888843334455555678999998765211 000000  00000000      0 01 125789999 46667777


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.++.|++||..++.......         .            +.....+...     .....-.....|+++|++..++
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G---------~------------G~~~~~~g~~-----~~~~~~~~P~GIavspdG~~LY  755 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSG---------D------------GYERNLNGSS-----GTSTSFAQPSGISLSPDLKELY  755 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEec---------C------------CccccCCCCc-----cccccccCccEEEEeCCCCEEE
Confidence            888999999987653211000         0            0000000000     0001113467899999986678


Q ss_pred             EEEcCCCeEEEEEccCCCcccee-----------eec--------cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIK-----------VEK--------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~-----------~~~--------~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~  355 (496)
                      ++-+.++.|++||+.++......           .+.        ..-.....+++++ ++.++++-+.++.|++||..+
T Consensus       756 VADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~t  834 (1057)
T PLN02919        756 IADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPAT  834 (1057)
T ss_pred             EEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCC
Confidence            88888999999999875411100           000        0011346889999 888999999999999999876


Q ss_pred             CCCCCCCCCceEecc--------------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          356 LTSNGVGSPINKFEG--------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       356 ~~~~~~~~~~~~~~~--------------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                            +. +.++.+              .-.....|+++++|. ++++-+.++.|++||+.+.
T Consensus       835 ------g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        835 ------KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             ------Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECCCCEEEEEECCCC
Confidence                  22 222221              123567899999997 7888888999999999874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.89  E-value=3e-06  Score=76.49  Aligned_cols=244  Identities=9%  Similarity=0.149  Sum_probs=148.3

Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC---CCcEEEEecCC--ccccccCCc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQD--HITSSATDP  236 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg~i~iwd~~~--~~~~~~~~~  236 (496)
                      +.-|++|++.+.....        ... .+-.+.. ..+-|+|+|++++|.++..   +|.|..+.++.  +.....   
T Consensus        15 s~gI~v~~ld~~~g~l--------~~~-~~v~~~~-nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l---   81 (346)
T COG2706          15 SQGIYVFNLDTKTGEL--------SLL-QLVAELG-NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL---   81 (346)
T ss_pred             CCceEEEEEeCccccc--------chh-hhccccC-CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe---
Confidence            5679999998652211        111 1222333 3578999999999988865   47788877763  221110   


Q ss_pred             cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC-Cccc
Q 010997          237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPV  315 (496)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~  315 (496)
                                                         ........+-.-+++++++..+|.+--..|.|.++-++.. ....
T Consensus        82 -----------------------------------n~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~  126 (346)
T COG2706          82 -----------------------------------NRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP  126 (346)
T ss_pred             -----------------------------------eccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc
Confidence                                               0011112233788999999544445556789999998763 2111


Q ss_pred             eeeeccCCCC----------eEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC
Q 010997          316 IKVEKAHDAD----------LHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK  384 (496)
Q Consensus       316 ~~~~~~~~~~----------v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~  384 (496)
                      ......|...          +.+..+.| ++++|++.+. --.|.+|++......  ......+ ........|.|+|++
T Consensus       127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~--~~~~~~v-~~G~GPRHi~FHpn~  202 (346)
T COG2706         127 VVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLT--PADPAEV-KPGAGPRHIVFHPNG  202 (346)
T ss_pred             ceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccc--ccccccc-CCCCCcceEEEcCCC
Confidence            1122245444          88999999 8888888754 246999999852100  0111122 234567899999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEE
Q 010997          385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI  464 (496)
Q Consensus       385 ~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~i  464 (496)
                      ++..+..--+++|.+|............+.-...|.    .+.| .....++..+++|++|.||--..       ..|-+
T Consensus       203 k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~----dF~g-~~~~aaIhis~dGrFLYasNRg~-------dsI~~  270 (346)
T COG2706         203 KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE----DFTG-TNWAAAIHISPDGRFLYASNRGH-------DSIAV  270 (346)
T ss_pred             cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc----ccCC-CCceeEEEECCCCCEEEEecCCC-------CeEEE
Confidence            987767777999999999874222211111000110    1112 23567889999999888764333       58888


Q ss_pred             eecCC
Q 010997          465 WRMSD  469 (496)
Q Consensus       465 w~~~~  469 (496)
                      |.+..
T Consensus       271 f~V~~  275 (346)
T COG2706         271 FSVDP  275 (346)
T ss_pred             EEEcC
Confidence            88764

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=8.7e-09  Score=96.77  Aligned_cols=173  Identities=22%  Similarity=0.311  Sum_probs=118.7

Q ss_pred             eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997          189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  268 (496)
Q Consensus       189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (496)
                      ..+.||+. .|..++--.+.+-+++++.|++|++|.++.....                                 ..+.
T Consensus       729 ~nf~GH~~-~iRai~AidNENSFiSASkDKTVKLWSik~EgD~---------------------------------~~ts  774 (1034)
T KOG4190|consen  729 CNFTGHQE-KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE---------------------------------IGTS  774 (1034)
T ss_pred             ecccCcHH-HhHHHHhcccccceeeccCCceEEEEEeccccCc---------------------------------cccc
Confidence            46789988 5788877777888999999999999998743211                                 1122


Q ss_pred             CCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-CCcEE-EEEcCCC
Q 010997          269 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLI-LTGSADN  346 (496)
Q Consensus       269 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l-~sgs~dg  346 (496)
                      ....++..|+.+|.++.|-.+. ..+++  .||.|++||.--++...........+.+..+.--|. +..++ |.++...
T Consensus       775 aCQfTY~aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeS  851 (1034)
T KOG4190|consen  775 ACQFTYQAHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAES  851 (1034)
T ss_pred             eeeeEhhhccCcccceeeeecc-ceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchh
Confidence            2346788999999999998776 45555  489999999766552110111112223333333231 33444 4447889


Q ss_pred             cEEEEeCCCCCCCCCCCCceEec-----cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~-----~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +|+++|.|.      +.-...++     +....+.+++..|.|.. +|.+-..|.|.+.|.+++
T Consensus       852 TVKl~DaRs------ce~~~E~kVcna~~Pna~~R~iaVa~~GN~-lAa~LSnGci~~LDaR~G  908 (1034)
T KOG4190|consen  852 TVKLFDARS------CEWTCELKVCNAPGPNALTRAIAVADKGNK-LAAALSNGCIAILDARNG  908 (1034)
T ss_pred             hheeeeccc------ccceeeEEeccCCCCchheeEEEeccCcch-hhHHhcCCcEEEEecCCC
Confidence            999999998      55444443     33456889999999997 578888999999999884

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.86  E-value=7.4e-07  Score=94.70  Aligned_cols=270  Identities=16%  Similarity=0.234  Sum_probs=158.0

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC-------------cc----------ccCCCCC-------CCCc
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN-------------RH----------AVLGATN-------SRPD  188 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~-------------~~----------~~~~~~~-------~~~~  188 (496)
                      -.+.|.+++||| |..+||..+.+|+|.+-+..-...             ++          .+.|...       ..+.
T Consensus       119 vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  119 VDSGILAASWSP-DEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EcCcEEEEEECC-CcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            457899999999 888999999888887764321110             00          0111100       0011


Q ss_pred             ------eEEecCCCCcceeeeecCCCCceEEecC------CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCC
Q 010997          189 ------LILTGHQDNAEFALAMCPTEPYVLSGGK------DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPG  256 (496)
Q Consensus       189 ------~~l~~h~~~~v~~l~~~p~~~~l~sg~~------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (496)
                            ..+. +.+. -..++|..||.|+|+.+.      -+.||||+-+ +.......                     
T Consensus       198 ~~~~d~~~~s-~dd~-~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE---------------------  253 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDG-RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE---------------------  253 (928)
T ss_pred             CCccccCccc-cCCC-ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc---------------------
Confidence                  1122 2232 358999999999997764      2589999876 22111100                     


Q ss_pred             CCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC---CCeEEEEEccCCCccceeee--ccCCCCeEEEEe
Q 010997          257 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVE--KAHDADLHCVDW  331 (496)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~i~~  331 (496)
                                         .-.+--.+++|.|.| +++|+...   ...|.+|.- +|-..-...+  ......|..+.|
T Consensus       254 -------------------~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~W  312 (928)
T PF04762_consen  254 -------------------PVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAW  312 (928)
T ss_pred             -------------------cCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEE
Confidence                               111122467999999 77777653   345666653 3321111222  245678999999


Q ss_pred             cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC-CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC---Cc
Q 010997          332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV---GK  407 (496)
Q Consensus       332 sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h-~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~---~~  407 (496)
                      ++ ++..||..-.|. |.+|-..+..    +..-+.+... ...+..+.|+|....-|...+.+|.+..+++.-.   +.
T Consensus       313 n~-ds~iLAv~~~~~-vqLWt~~NYH----WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~  386 (928)
T PF04762_consen  313 NS-DSEILAVWLEDR-VQLWTRSNYH----WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP  386 (928)
T ss_pred             CC-CCCEEEEEecCC-ceEEEeeCCE----EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Confidence            99 999999977665 9999988733    3333344322 3345569999988776667776677766554321   00


Q ss_pred             cc----------------CCCC-CCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          408 KV----------------EQGP-RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       408 ~~----------------~~~~-~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ..                ...+ .....||......-.....|.+++|++++..+++- ..       ||.|.+|...
T Consensus       387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl-~~-------d~~l~~~~~~  456 (928)
T PF04762_consen  387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVL-TS-------DGSLSIYEWD  456 (928)
T ss_pred             CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEE-EC-------CCCEEEEEec
Confidence            00                0000 11123333333333345789999999987654433 32       4899999865

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=2.1e-06  Score=83.75  Aligned_cols=195  Identities=11%  Similarity=-0.005  Sum_probs=114.1

Q ss_pred             cceeeeecCCCCc-eEEecC---CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997          198 AEFALAMCPTEPY-VLSGGK---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  273 (496)
Q Consensus       198 ~v~~l~~~p~~~~-l~sg~~---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (496)
                      ......|+|+|+. ++..+.   +..|.++|+.++..                                         ..
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------------------------------------~~  227 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----------------------------------------EK  227 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-----------------------------------------EE
Confidence            4568899999984 554333   35688888865432                                         22


Q ss_pred             eecCCCceeEEEEccCCCceEEEEcCC--CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc-CCC--cE
Q 010997          274 YNGHEDTVEDVTFCPSSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADN--SV  348 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg--~i  348 (496)
                      +....+......|+|+|..++++.+.+  ..|.++|+..+.   ...+..+........|+| ++..|+..+ ..|  .|
T Consensus       228 lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---~~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~I  303 (419)
T PRK04043        228 IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---LTQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNI  303 (419)
T ss_pred             EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---EEEcccCCCccCccEECC-CCCEEEEEECCCCCceE
Confidence            323344556678999996666666544  457777877665   222223333334568999 787665554 334  57


Q ss_pred             EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC--------CcEEEEECCCCCcccCCCCCCCCCCC
Q 010997          349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEKVGKKVEQGPRTTNYPA  420 (496)
Q Consensus       349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~  420 (496)
                      .+.|+..      +.. ..+......  ...|+|+|+.|+.++...        ..|.+.|+....             .
T Consensus       304 y~~dl~~------g~~-~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-------------~  361 (419)
T PRK04043        304 FMKKLNS------GSV-EQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-------------I  361 (419)
T ss_pred             EEEECCC------CCe-EeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-------------e
Confidence            7777765      332 222211111  248999999876666543        357777876631             1


Q ss_pred             eeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       421 ~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ..+.   .. .......|+|+|..++.+...     +....|.+.++.
T Consensus       362 ~~LT---~~-~~~~~p~~SPDG~~I~f~~~~-----~~~~~L~~~~l~  400 (419)
T PRK04043        362 RRLT---AN-GVNQFPRFSSDGGSIMFIKYL-----GNQSALGIIRLN  400 (419)
T ss_pred             EECC---CC-CCcCCeEECCCCCEEEEEEcc-----CCcEEEEEEecC
Confidence            1111   11 123358899999887766432     223456666766

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.83  E-value=5.3e-06  Score=75.44  Aligned_cols=227  Identities=10%  Similarity=0.089  Sum_probs=139.1

Q ss_pred             EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec-CCCCceEEecCCCcEEEE
Q 010997          145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-PTEPYVLSGGKDKSVVLW  223 (496)
Q Consensus       145 ~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~-p~~~~l~sg~~Dg~i~iw  223 (496)
                      ...|.+.++.++++-...+.|..|+..+..            . ..+...   ...++++. +++. |+.+..+ .+.++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~------------~-~~~~~~---~~~G~~~~~~~g~-l~v~~~~-~~~~~   65 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE------------V-EVIDLP---GPNGMAFDRPDGR-LYVADSG-GIAVV   65 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTE------------E-EEEESS---SEEEEEEECTTSE-EEEEETT-CEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCe------------E-EEEecC---CCceEEEEccCCE-EEEEEcC-ceEEE
Confidence            467787778888888889999999998772            1 111111   14577777 5654 4445544 44555


Q ss_pred             ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--c-CCCceeEEEEccCCCceEEEEcCC
Q 010997          224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--G-HEDTVEDVTFCPSSAQEFCSVGDD  300 (496)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~l~~~~~~~~~l~s~~~d  300 (496)
                      |..++....                                      +....  . .....+++++.|+| ++.++....
T Consensus        66 d~~~g~~~~--------------------------------------~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~  106 (246)
T PF08450_consen   66 DPDTGKVTV--------------------------------------LADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGG  106 (246)
T ss_dssp             ETTTTEEEE--------------------------------------EEEEETTCSCTEEEEEEEE-TTS--EEEEEECC
T ss_pred             ecCCCcEEE--------------------------------------EeeccCCCcccCCCceEEEcCCC-CEEEEecCC
Confidence            877643211                                      11111  1 34578999999999 566665543


Q ss_pred             --------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCC-CCCCCceEecc
Q 010997          301 --------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSN-GVGSPINKFEG  370 (496)
Q Consensus       301 --------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~-~~~~~~~~~~~  370 (496)
                              |.|..++.. ++   .......-...+.|+|+| ++..| ++-+..+.|..+|+...... .....+..+..
T Consensus       107 ~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~  181 (246)
T PF08450_consen  107 GGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG  181 (246)
T ss_dssp             BCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS
T ss_pred             CccccccccceEEECCC-Ce---EEEEecCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCC
Confidence                    557777766 33   222223456679999999 77655 57778889999999753210 00011222333


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe-cCCCCcEEEEe
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW-NASDPWTVVSV  449 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-~p~~~~l~~s~  449 (496)
                      ..+..-.+++..+|. |+++....+.|.++|...                .++....--...+++++| -++...|+++.
T Consensus       182 ~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~G----------------~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  182 GPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPDG----------------KLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SSCEEEEEEEBTTS--EEEEEETTTEEEEEETTS----------------CEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CCcCCCcceEcCCCC-EEEEEcCCCEEEEECCCc----------------cEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            233478999999997 676766788999999773                233333322447899999 46667777765


Q ss_pred             c
Q 010997          450 S  450 (496)
Q Consensus       450 s  450 (496)
                      +
T Consensus       245 a  245 (246)
T PF08450_consen  245 A  245 (246)
T ss_dssp             B
T ss_pred             C
Confidence            4

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.82  E-value=6.3e-06  Score=80.45  Aligned_cols=194  Identities=9%  Similarity=0.043  Sum_probs=111.6

Q ss_pred             CceeEEEecCCCCc-EEEEEeC---CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-Eec
Q 010997          141 GEVNRIRELPQNTK-IVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGG  215 (496)
Q Consensus       141 ~~V~~l~~~p~~~~-~lat~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg~  215 (496)
                      +.+..-+|+| +++ +++..+.   +..|+++|+.++.            ... +....+ ......|+|||+.|+ +.+
T Consensus       188 ~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~------------~~~-lt~~~g-~~~~~~~SPDG~~la~~~~  252 (419)
T PRK04043        188 GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGK------------KEK-IASSQG-MLVVSDVSKDGSKLLLTMA  252 (419)
T ss_pred             CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCc------------EEE-EecCCC-cEEeeEECCCCCEEEEEEc
Confidence            4677889999 665 3554333   3579999998772            111 222222 345678999998655 444


Q ss_pred             CC--CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          216 KD--KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       216 ~D--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      .+  ..|.++|+.++..                                         ..+..+........|+|+|..+
T Consensus       253 ~~g~~~Iy~~dl~~g~~-----------------------------------------~~LT~~~~~d~~p~~SPDG~~I  291 (419)
T PRK04043        253 PKGQPDIYLYDTNTKTL-----------------------------------------TQITNYPGIDVNGNFVEDDKRI  291 (419)
T ss_pred             cCCCcEEEEEECCCCcE-----------------------------------------EEcccCCCccCccEECCCCCEE
Confidence            44  4566667654321                                         1222222223345799999666


Q ss_pred             EEEEcCCC--eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---------CcEEEEeCCCCCCCCCC
Q 010997          294 FCSVGDDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---------NSVRMFDRRNLTSNGVG  362 (496)
Q Consensus       294 l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---------g~i~iwd~~~~~~~~~~  362 (496)
                      +++....+  .|.++|+.++..  ...... ..  ....|+| ++..|+..+..         ..|.+.|+..      +
T Consensus       292 ~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~-g~--~~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~------g  359 (419)
T PRK04043        292 VFVSDRLGYPNIFMKKLNSGSV--EQVVFH-GK--NNSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNS------D  359 (419)
T ss_pred             EEEECCCCCceEEEEECCCCCe--EeCccC-CC--cCceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCC------C
Confidence            66654444  577777776652  122111 11  1248999 88877665543         2678888776      3


Q ss_pred             CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEECCC
Q 010997          363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEK  404 (496)
Q Consensus       363 ~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~--i~iwd~~~  404 (496)
                       ....+... .......|+|||+.|+.+....+.  +.+.++..
T Consensus       360 -~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        360 -YIRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             -CeEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence             23444432 233368899999977655544444  44555543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.82  E-value=5.1e-08  Score=88.51  Aligned_cols=157  Identities=18%  Similarity=0.213  Sum_probs=98.7

Q ss_pred             eeEEEEccCCCceEEEEcCCCeEEEEEccCCCc--cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      ...+..++.+ .+++.+..+....+++++....  ...... .-...-+++.|.. .......+..-|.++-+|+-+..+
T Consensus        65 ~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   65 PALVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIR-EDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             ccccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeee-ccceEEEEeecCCceeeeeecccc
Confidence            3445566666 7788887777777777766542  111111 1222334444444 334444444444444444433211


Q ss_pred             CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997          359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  438 (496)
Q Consensus       359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  438 (496)
                          .+...+-+|-.-++.|+|+||+++| +++..|..|+|-.+....              ..-.-.-||..-|..++.
T Consensus       142 ----~~~~~~lGhvSml~dVavS~D~~~I-itaDRDEkIRvs~ypa~f--------------~IesfclGH~eFVS~isl  202 (390)
T KOG3914|consen  142 ----GRCEPILGHVSMLLDVAVSPDDQFI-ITADRDEKIRVSRYPATF--------------VIESFCLGHKEFVSTISL  202 (390)
T ss_pred             ----cCcchhhhhhhhhheeeecCCCCEE-EEecCCceEEEEecCccc--------------chhhhccccHhheeeeee
Confidence                2344456899999999999999865 599999999997776531              011113589999999999


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      -++.. |+        |||.|++|++||+.
T Consensus       203 ~~~~~-Ll--------S~sGD~tlr~Wd~~  223 (390)
T KOG3914|consen  203 TDNYL-LL--------SGSGDKTLRLWDIT  223 (390)
T ss_pred             ccCce-ee--------ecCCCCcEEEEecc
Confidence            87543 44        77778999999998

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.81  E-value=2.5e-06  Score=80.07  Aligned_cols=236  Identities=13%  Similarity=0.170  Sum_probs=138.3

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      -.-++..+++|| .|.+|++.... .|.+|+-....             ...-.-|.+  |.-+.|+|.++||.+=+..+
T Consensus        31 ~~~p~~~~~~SP-~G~~l~~~~~~-~V~~~~g~~~~-------------~l~~~~~~~--V~~~~fSP~~kYL~tw~~~p   93 (561)
T COG5354          31 ENWPVAYVSESP-LGTYLFSEHAA-GVECWGGPSKA-------------KLVRFRHPD--VKYLDFSPNEKYLVTWSREP   93 (561)
T ss_pred             cCcchhheeecC-cchheehhhcc-ceEEccccchh-------------heeeeecCC--ceecccCcccceeeeeccCC
Confidence            345788999999 89999887665 69999887662             112223444  89999999999999865433


Q ss_pred             ---------------cEEEEecCCccccccCCccccccCCCCCceeccCC------CCCCCCCCCCC---CCCcCCeeee
Q 010997          219 ---------------SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP------KPGDGNDKAAD---GPSVGPRGIY  274 (496)
Q Consensus       219 ---------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~~~~~  274 (496)
                                     .+.+||+.++..............  ...+..+..      ......+.+.+   .....+...+
T Consensus        94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~--~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~l  171 (561)
T COG5354          94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYL--GWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNL  171 (561)
T ss_pred             ccChhhccCCccccCceeEEeccCceeEeeccccCCccc--ccceeeeeecchhhhhhccCeEEEEecCCccccCchhhc
Confidence                           499999998755433322111100  000000000      00111111111   1111122222


Q ss_pred             ecCCCceeEEEEccCCC-ceEEE-----EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc-----
Q 010997          275 NGHEDTVEDVTFCPSSA-QEFCS-----VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-----  343 (496)
Q Consensus       275 ~~h~~~v~~l~~~~~~~-~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-----  343 (496)
                      .  ...|.+..|+|.+. ..|+.     .+.++.+++|.+....  .+.+..-....=..+.|++ .+.+|+.--     
T Consensus       172 r--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~k  246 (561)
T COG5354         172 R--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTK  246 (561)
T ss_pred             c--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeeeEeecccEEEEec-CCceEEEEEEEeee
Confidence            2  35688889999742 23443     4567899999998655  2222112223335678888 666554321     


Q ss_pred             ------CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEE-EEEeCCCcEEEEECCCC
Q 010997          344 ------ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF-GSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       344 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~ll-as~~~dg~i~iwd~~~~  405 (496)
                            ....+.|++++.       ..+.....-.++|...+|.|.+..+. ++|-.+-.+.++|++..
T Consensus       247 snKsyfgesnLyl~~~~e-------~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         247 SNKSYFGESNLYLLRITE-------RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             cccceeccceEEEEeecc-------cccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence                  124678888885       23333335688999999999887632 34456889999999873

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.76  E-value=1.8e-06  Score=75.61  Aligned_cols=202  Identities=12%  Similarity=0.142  Sum_probs=110.2

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC------CceEEecC
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE------PYVLSGGK  216 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~------~~l~sg~~  216 (496)
                      =..++|+| ++.+||.+...|+|++||+...... .+      .+...+.+--..+|-+|.|.+..      ..|+.-..
T Consensus        46 WRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~I------~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y  117 (282)
T PF15492_consen   46 WRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-VI------PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY  117 (282)
T ss_pred             heEEEECC-CCcEEEEEcCCCeEEEEecccceeE-Ec------CcccccCCccccceeeeEeeccccccccceeEEEEec
Confidence            46789999 8899999999999999999864211 11      11111222222356677665432      14666666


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~  295 (496)
                      +|.++-+-+..+......                                 ......+.. +...|+++.++|.. ++|+
T Consensus       118 ~G~L~Sy~vs~gt~q~y~---------------------------------e~hsfsf~~~yp~Gi~~~vy~p~h-~LLl  163 (282)
T PF15492_consen  118 RGQLRSYLVSVGTNQGYQ---------------------------------ENHSFSFSSHYPHGINSAVYHPKH-RLLL  163 (282)
T ss_pred             cceeeeEEEEcccCCcce---------------------------------eeEEEEecccCCCceeEEEEcCCC-CEEE
Confidence            777777765322110000                                 000122222 46789999999998 5666


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCc------EEEEeCCCCCCCCCCCCceEe
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNS------VRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~------i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      .||....      ..+.      ..+....+++-..-.....+. ++...|+.      -.+|.+-+      .......
T Consensus       164 VgG~~~~------~~~~------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~------~~~fs~~  225 (282)
T PF15492_consen  164 VGGCEQN------QDGM------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS------FKFFSRQ  225 (282)
T ss_pred             EeccCCC------CCcc------ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc------eeeeecc
Confidence            5554322      0000      012223333332221112222 22222221      12232222      1111111


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ......|..|..||+|. +||+...+|.|.+|++...
T Consensus       226 ~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             ccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecCcc
Confidence            23467899999999999 6789999999999999874

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.75  E-value=3.7e-06  Score=86.96  Aligned_cols=236  Identities=16%  Similarity=0.289  Sum_probs=135.2

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  220 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i  220 (496)
                      +.|.++.|.- +++-++.+..+|.|.+-|.++.              ...+.|..+..|.+++|+||+..++-.+.++++
T Consensus        69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~--------------~~eivg~vd~GI~aaswS~Dee~l~liT~~~tl  133 (1265)
T KOG1920|consen   69 DEIVSVQFLA-DTNSICVITALGDIILVDPETL--------------ELEIVGNVDNGISAASWSPDEELLALITGRQTL  133 (1265)
T ss_pred             cceEEEEEec-ccceEEEEecCCcEEEEccccc--------------ceeeeeeccCceEEEeecCCCcEEEEEeCCcEE
Confidence            5799999988 7777888888999999888776              234555555679999999999998888877887


Q ss_pred             EEEecC----Ccccc-ccCCccccccCCCCCc--eeccCCCCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccCCC
Q 010997          221 VLWSIQ----DHITS-SATDPATAKSAGSSGS--IIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSA  291 (496)
Q Consensus       221 ~iwd~~----~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~  291 (496)
                      .+-+-.    ..+.. ............+.+.  ....   .+.+.....  ........+.  .-.+.=+.|.|--+| 
T Consensus       134 l~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfr---gs~gr~~~~--~~~~~ek~~~~~~~~~~~~~IsWRgDg-  207 (1265)
T KOG1920|consen  134 LFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFR---GSEGRQAAR--QKIEKEKALEQIEQDDHKTSISWRGDG-  207 (1265)
T ss_pred             EEEeccccchhccccccccccccccceecccccceeee---cchhhhccc--ccccccccccchhhccCCceEEEccCC-
Confidence            775431    00000 0000000000000000  0000   000000000  0000000000  011222468999888 


Q ss_pred             ceEEEE-----cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc---CCCcEEEEeCCCCCCCCCCC
Q 010997          292 QEFCSV-----GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       292 ~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs---~dg~i~iwd~~~~~~~~~~~  363 (496)
                      .+|++.     .....|++||-. +.  .-.........-.+++|-| .|.++|+-.   .|+.|.+|..+-+..   +.
T Consensus       208 ~~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~h---g~  280 (1265)
T KOG1920|consen  208 EYFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRH---GE  280 (1265)
T ss_pred             cEEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccc---cc
Confidence            677762     233799999976 43  2222223334456899999 899988753   456799998665432   22


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEE---EeCCCcEEEEECCCC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGS---SAEDGLLNIWDYEKV  405 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas---~~~dg~i~iwd~~~~  405 (496)
                      ....+......|..++|+.++. +||.   ......|++|-+...
T Consensus       281 f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  281 FVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             cccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCe
Confidence            2222333344599999999988 6666   455556999998763

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.73  E-value=3e-06  Score=78.82  Aligned_cols=173  Identities=15%  Similarity=0.173  Sum_probs=130.2

Q ss_pred             ecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC-cEEEEecC
Q 010997          148 ELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK-SVVLWSIQ  226 (496)
Q Consensus       148 ~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg-~i~iwd~~  226 (496)
                      |++.+++++|..|. |.+.|.+...+.              ..--+|.. .|.-..+..+++-++.|..|| .+-|+|.+
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~--------------~iqv~~~~-~VrY~r~~~~~e~~vigt~dgD~l~iyd~~  390 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGY--------------SIQVGKKG-GVRYRRIQVDPEGDVIGTNDGDKLGIYDKD  390 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCe--------------eEEcCCCC-ceEEEEEccCCcceEEeccCCceEEEEecC
Confidence            55668889988876 678887766551              11224444 477777777777899999999 99999998


Q ss_pred             CccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEE
Q 010997          227 DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW  306 (496)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iw  306 (496)
                      ++..                                         ..+...-+.|.++..+++| ..++.+.+...|-++
T Consensus       391 ~~e~-----------------------------------------kr~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vi  428 (668)
T COG4946         391 GGEV-----------------------------------------KRIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVI  428 (668)
T ss_pred             CceE-----------------------------------------EEeeCCccceEEEEEcCCC-cEEEEEcCceEEEEE
Confidence            6543                                         4556667889999999999 778888888999999


Q ss_pred             EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC----cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC
Q 010997          307 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP  382 (496)
Q Consensus       307 d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp  382 (496)
                      |+.++.  ....-+...+-|+.++|+| ++.++|-+--+|    .|+++|+..       ..+.......+.=.+-+|.|
T Consensus       429 didngn--v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~-------~Kiy~vTT~ta~DfsPaFD~  498 (668)
T COG4946         429 DIDNGN--VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG-------GKIYDVTTPTAYDFSPAFDP  498 (668)
T ss_pred             EecCCC--eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC-------CeEEEecCCcccccCcccCC
Confidence            999998  3444445667899999999 999999988776    589999986       33444444444445667888


Q ss_pred             CCCCEE
Q 010997          383 DKSSVF  388 (496)
Q Consensus       383 ~~~~ll  388 (496)
                      ++++|.
T Consensus       499 d~ryLY  504 (668)
T COG4946         499 DGRYLY  504 (668)
T ss_pred             CCcEEE
Confidence            888754

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.71  E-value=4.8e-08  Score=86.86  Aligned_cols=155  Identities=21%  Similarity=0.335  Sum_probs=111.8

Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      ++.+.+..|-+-|+.++.   ...+ ...+.|.++.|.. .++++..|..+|.|..+|+|.... +.+.+.+.+. |.+.
T Consensus       228 fs~G~sqqv~L~nvetg~---~qsf-~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnq-G~~~~a~rly-h~Ss  300 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGH---QQSF-QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQ-GNGWCAQRLY-HDSS  300 (425)
T ss_pred             ecccccceeEEEEeeccc---cccc-ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeeccc-CCCcceEEEE-cCcc
Confidence            566677889999998876   2333 3678899999998 799999999999999999998432 2245555554 8999


Q ss_pred             EEEEEEcC-CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc--eEEecCCCCcEEEEecC
Q 010997          375 VLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV--DFHWNASDPWTVVSVSD  451 (496)
Q Consensus       375 i~~l~~sp-~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~~~~~p~~~~l~~s~s~  451 (496)
                      |+++..-. ++++| .+.+.+|.|++||++.....            .-+.+..||...-.  -+..++.. .+++++++
T Consensus       301 vtslq~Lq~s~q~L-maS~M~gkikLyD~R~~K~~------------~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~Gd  366 (425)
T KOG2695|consen  301 VTSLQILQFSQQKL-MASDMTGKIKLYDLRATKCK------------KSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGD  366 (425)
T ss_pred             hhhhhhhccccceE-eeccCcCceeEeeehhhhcc------------cceeeeeccccccccccccccccc-ceEEEccC
Confidence            99998877 56655 57778999999999985221            23566778865332  33445544 45555555


Q ss_pred             CCCCCCCCCeEEEeecCCCCcCCchHHHHHHH
Q 010997          452 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  483 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~  483 (496)
                      |       -..+||.+.      .+.++.+++
T Consensus       367 D-------cytRiWsl~------~ghLl~tip  385 (425)
T KOG2695|consen  367 D-------CYTRIWSLD------SGHLLCTIP  385 (425)
T ss_pred             e-------eEEEEEecc------cCceeeccC
Confidence            4       799999999      566666665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=1e-07  Score=92.50  Aligned_cols=172  Identities=17%  Similarity=0.220  Sum_probs=125.9

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      ...|++|+....|++.|+.||.+++-.+.+........+                         +....+...-+++.+|
T Consensus        16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------------------------laa~snLsmNQtLeGH   70 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------------------------LAAASNLSMNQTLEGH   70 (1189)
T ss_pred             eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------------------------cccccccchhhhhccC
Confidence            368999999999999999999999999876533221111                         1111223334788999


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  357 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~  357 (496)
                      ...|.-+.|+... +.|.|...+|.|.+|-+-.+.......-....+-|.+++|+. +|..++....||.|.+=.+.-  
T Consensus        71 ~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdG--  146 (1189)
T KOG2041|consen   71 NASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDG--  146 (1189)
T ss_pred             cceEEEEEecccc-ccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeecc--
Confidence            9999999999887 789999999999999998877422223334567889999999 999999999999888766553  


Q ss_pred             CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                           ..+.--.-.......+.|++|.+.+| .+-..|.+++||...
T Consensus       147 -----NRIwgKeLkg~~l~hv~ws~D~~~~L-f~~ange~hlydnqg  187 (1189)
T KOG2041|consen  147 -----NRIWGKELKGQLLAHVLWSEDLEQAL-FKKANGETHLYDNQG  187 (1189)
T ss_pred             -----ceecchhcchheccceeecccHHHHH-hhhcCCcEEEecccc
Confidence                 22221111122345789999998654 666789999999875

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=1.2e-06  Score=86.68  Aligned_cols=187  Identities=17%  Similarity=0.225  Sum_probs=129.3

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      ..+.+.|++++   +++||-|+.+|.|++++.....              .+...|...       .-+|.+++||+.||
T Consensus        38 ~~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--------------~~~~~~s~~-------~~~Gey~asCS~DG   93 (846)
T KOG2066|consen   38 QNDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--------------KTNFDHSSS-------ILEGEYVASCSDDG   93 (846)
T ss_pred             hhhHHHHHHhh---cceeeeccccceEEEEecCCcc--------------ccccccccc-------ccCCceEEEecCCC
Confidence            45678888874   5789999999999999987652              222334331       45799999999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC----CCceE
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS----SAQEF  294 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l  294 (496)
                      +|.|-.+-+....                                        . -.....++.+++++|+    ....|
T Consensus        94 kv~I~sl~~~~~~----------------------------------------~-~~df~rpiksial~Pd~~~~~sk~f  132 (846)
T KOG2066|consen   94 KVVIGSLFTDDEI----------------------------------------T-QYDFKRPIKSIALHPDFSRQQSKQF  132 (846)
T ss_pred             cEEEeeccCCccc----------------------------------------e-eEecCCcceeEEeccchhhhhhhhe
Confidence            9999887654321                                        1 1123568899999997    23579


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC-
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-  373 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-  373 (496)
                      ++||.-| +.++.-+--............++|.++.|   .++++|=++.+| |++||+..      ...+..+..... 
T Consensus       133 v~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~------~~~l~~i~~p~~~  201 (846)
T KOG2066|consen  133 VSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPT------RQRLTNIPPPSQS  201 (846)
T ss_pred             eecCcce-EEEehhhhhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccc------cceeeccCCCCCC
Confidence            9999988 77775432211112234567899999999   579999998888 99999987      444444432222 


Q ss_pred             -----CEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          374 -----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       374 -----~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                           --..+.|.++..  |+.| ...+|+|..++.
T Consensus       202 ~R~e~fpphl~W~~~~~--LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  202 VRPELFPPHLHWQDEDR--LVIG-WGDSVKICSIKK  234 (846)
T ss_pred             CCcccCCCceEecCCCe--EEEe-cCCeEEEEEEec
Confidence                 234688888765  3344 455799999883

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.69  E-value=1.6e-05  Score=74.06  Aligned_cols=265  Identities=13%  Similarity=0.109  Sum_probs=154.4

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCC-cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSP-DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      -.++|.+.|.-.++.. +++-++.|..|| .+-|+|..+++.             ..+...-+ .|.++..+++|++++.
T Consensus       354 iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-------------kr~e~~lg-~I~av~vs~dGK~~vv  418 (668)
T COG4946         354 IQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-------------KRIEKDLG-NIEAVKVSPDGKKVVV  418 (668)
T ss_pred             EEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-------------EEeeCCcc-ceEEEEEcCCCcEEEE
Confidence            3468899998888887 666888999999 899999998831             23334444 4899999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      +.....|.+.|++++...                                        ..-....+-|+++.|||++ ..
T Consensus       419 aNdr~el~vididngnv~----------------------------------------~idkS~~~lItdf~~~~ns-r~  457 (668)
T COG4946         419 ANDRFELWVIDIDNGNVR----------------------------------------LIDKSEYGLITDFDWHPNS-RW  457 (668)
T ss_pred             EcCceEEEEEEecCCCee----------------------------------------EecccccceeEEEEEcCCc-ee
Confidence            988889999999876432                                        1122345679999999998 67


Q ss_pred             EEEEcCC----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc-------CCCcEEEEeCCCCCC----
Q 010997          294 FCSVGDD----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-------ADNSVRMFDRRNLTS----  358 (496)
Q Consensus       294 l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-------~dg~i~iwd~~~~~~----  358 (496)
                      +|-+--+    ..|+++|+..++.-.+.+..++   =.+-+|.| ++++|.--+       .|..+.=+.......    
T Consensus       458 iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~---DfsPaFD~-d~ryLYfLs~RsLdPs~Drv~fnf~f~~vskPylv  533 (668)
T COG4946         458 IAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAY---DFSPAFDP-DGRYLYFLSARSLDPSNDRVIFNFSFQRVSKPYLV  533 (668)
T ss_pred             EEEecCcceeeeeEEEEecCCCeEEEecCCccc---ccCcccCC-CCcEEEEEeccccCCCCCeeEEEEEEeeeccceEE
Confidence            7776555    4699999988772222222222   23457777 776654432       233332222221100    


Q ss_pred             -------CCCCCCceEeccCCCC---------EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCee
Q 010997          359 -------NGVGSPINKFEGHSAA---------VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  422 (496)
Q Consensus       359 -------~~~~~~~~~~~~h~~~---------i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  422 (496)
                             ++...+........+.         +.-+-.. .+.+.-+++-.+|.|.++...-.++...--......-...
T Consensus       534 ~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVe-e~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~  612 (668)
T COG4946         534 VLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVE-EGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLE  612 (668)
T ss_pred             EecCCCCChhhcCchhcCccccceehhhhcccccccccC-ccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEE
Confidence                   0000011111111110         0000011 2333444666677777776654333221100000000111


Q ss_pred             EEEec-----CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          423 FFQHA-----GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       423 ~~~~~-----~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .+.+.     .-...|.++..|+++..+++  -+       ||.++++++..
T Consensus       613 ~ydletkk~~e~k~nvss~rlS~D~s~ilv--k~-------d~kl~~f~vek  655 (668)
T COG4946         613 KYDLETKKVEEYKDNVSSFRLSSDGSKILV--KL-------DGKLRLFDVEK  655 (668)
T ss_pred             EEecchhhHHHHhcccceEEEcCCCCEEEE--Ee-------CCeEEEEeccc
Confidence            12111     12357899999999999886  33       49999999984

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.66  E-value=5e-05  Score=66.75  Aligned_cols=153  Identities=13%  Similarity=0.099  Sum_probs=85.9

Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC--CcceeeeecCCCCceEEecCCCcEEEE
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVLSGGKDKSVVLW  223 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~--~~v~~l~~~p~~~~l~sg~~Dg~i~iw  223 (496)
                      ++.++ +|++||.-- |..|.|-.....-.          ..+...+-+.+  ..-.-++|+||+..||.+...|+|+++
T Consensus         3 ~~~~~-~Gk~lAi~q-d~~iEiRsa~Ddf~----------si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf   70 (282)
T PF15492_consen    3 LALSS-DGKLLAILQ-DQCIEIRSAKDDFS----------SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF   70 (282)
T ss_pred             eeecC-CCcEEEEEe-ccEEEEEeccCCch----------heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence            34445 788877654 45666655443310          11112222211  123679999999999999999999999


Q ss_pred             ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-----CceEEEEc
Q 010997          224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-----AQEFCSVG  298 (496)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~~l~s~~  298 (496)
                      |+...... ...+...  .                               ...-...|.+|.|.+..     ...|+...
T Consensus        71 dl~g~~lf-~I~p~~~--~-------------------------------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~  116 (282)
T PF15492_consen   71 DLMGSELF-VIPPAMS--F-------------------------------PGDLSDAIAGLIFLEYKKSAQWSYELLVIN  116 (282)
T ss_pred             ecccceeE-EcCcccc--c-------------------------------CCccccceeeeEeeccccccccceeEEEEe
Confidence            98753221 1111000  0                               00112345555554322     24677777


Q ss_pred             CCCeEEEEEccCCC---cccee--eec-cCCCCeEEEEecCCCCcEEEEEcCC
Q 010997          299 DDSCLILWDARVGT---SPVIK--VEK-AHDADLHCVDWNPLDDNLILTGSAD  345 (496)
Q Consensus       299 ~dg~i~iwd~~~~~---~~~~~--~~~-~~~~~v~~i~~sp~~~~~l~sgs~d  345 (496)
                      ..|.++-|-+..+.   .....  .+. .+...|+++.++| ..++|++|+..
T Consensus       117 Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~  168 (282)
T PF15492_consen  117 YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCE  168 (282)
T ss_pred             ccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccC
Confidence            88888877764321   11111  122 2467999999999 67777777654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.66  E-value=1.3e-08  Score=97.53  Aligned_cols=208  Identities=18%  Similarity=0.275  Sum_probs=138.8

Q ss_pred             ceeeeecCCC--CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997          199 EFALAMCPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  276 (496)
Q Consensus       199 v~~l~~~p~~--~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (496)
                      +.|+++.-+.  ..++.|..+|.|.+-.++.....                                      .-....+
T Consensus        59 ~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--------------------------------------s~E~tp~  100 (783)
T KOG1008|consen   59 VKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--------------------------------------SAEVTPG  100 (783)
T ss_pred             ceeehhhcCCchhhhhhccccCceEEeecCCcccc--------------------------------------cceeccc
Confidence            5677776553  37888999999999887643221                                      0123446


Q ss_pred             CCCceeEEEEccCCCceEEEEc----CCCeEEEEEccCCCc-cc--eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEE
Q 010997          277 HEDTVEDVTFCPSSAQEFCSVG----DDSCLILWDARVGTS-PV--IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  349 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~-~~--~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~  349 (496)
                      |...+++++|++-+.+.||+|-    .|..+.|||+.+.-. |.  .....+-....++++|.. +..++.+|.....++
T Consensus       101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~  179 (783)
T KOG1008|consen  101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVH  179 (783)
T ss_pred             ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccchhh
Confidence            7889999999987656777773    467899999987621 11  111112445677999997 889999999999999


Q ss_pred             EEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC-CCCCEEEEEeCCCcEEEEE-CCCCCcccCCCCCCCCCCCeeEEEec
Q 010997          350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWD-YEKVGKKVEQGPRTTNYPAGLFFQHA  427 (496)
Q Consensus       350 iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~llas~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (496)
                      ++|+|.       .........+..+..+...| .+.+ + +...||.|.+|| .+........          .+....
T Consensus       180 ifdlRq-------s~~~~~svnTk~vqG~tVdp~~~nY-~-cs~~dg~iAiwD~~rnienpl~~----------i~~~~N  240 (783)
T KOG1008|consen  180 IFDLRQ-------SLDSVSSVNTKYVQGITVDPFSPNY-F-CSNSDGDIAIWDTYRNIENPLQI----------ILRNEN  240 (783)
T ss_pred             hhhhhh-------hhhhhhhhhhhhcccceecCCCCCc-e-eccccCceeeccchhhhccHHHH----------HhhCCC
Confidence            999995       22222222345667788888 4444 5 444599999999 4332211110          000001


Q ss_pred             CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      .-...+..++|+|....++++++.|      .++|+++++...
T Consensus       241 ~~~~~l~~~aycPtrtglla~l~Rd------S~tIrlydi~~v  277 (783)
T KOG1008|consen  241 KKPKQLFALAYCPTRTGLLAVLSRD------SITIRLYDICVV  277 (783)
T ss_pred             CcccceeeEEeccCCcchhhhhccC------cceEEEeccccc
Confidence            1112488999999999999999888      589999998643

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1.3e-06  Score=79.61  Aligned_cols=161  Identities=9%  Similarity=0.114  Sum_probs=105.0

Q ss_pred             CCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997          186 RPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  264 (496)
Q Consensus       186 ~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (496)
                      ++...+.+|.. .|..++|+|..+ +|..++.+..|+|.|+++....                                 
T Consensus       184 kssq~lp~~g~-~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v---------------------------------  229 (463)
T KOG1645|consen  184 KSSQILPGEGS-FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV---------------------------------  229 (463)
T ss_pred             chhhcccccch-hhhhhccCccccceeeeeccCceEEEEecccceee---------------------------------
Confidence            33445667766 799999999876 7889999999999999875432                                 


Q ss_pred             CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec-cCCCCeEEEEecCC-----CCcE
Q 010997          265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPL-----DDNL  338 (496)
Q Consensus       265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~sp~-----~~~~  338 (496)
                             ..+..+ ..+++++|.-+..+++..|-..|.|.+||+|..+.+...... ....+|..++.-+-     .+.+
T Consensus       230 -------ssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl  301 (463)
T KOG1645|consen  230 -------SSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGL  301 (463)
T ss_pred             -------eheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccce
Confidence                   334445 689999999988889999999999999999988754332211 22344544443220     2444


Q ss_pred             EEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC
Q 010997          339 ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE  393 (496)
Q Consensus       339 l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~  393 (496)
                      |+....+  +..|.+.....  ...++..+. ..+...+++.++...++|+|.-.
T Consensus       302 Lv~~lt~--l~f~ei~~s~~--~~p~vlele-~pG~cismqy~~~snh~l~tyRs  351 (463)
T KOG1645|consen  302 LVFALTV--LQFYEIVFSAE--CLPCVLELE-PPGICISMQYHGVSNHLLLTYRS  351 (463)
T ss_pred             EEeeehh--hhhhhhhcccc--CCCcccccC-CCcceeeeeecCccceEEEEecC
Confidence            4443332  45666554221  022223332 35566777888777777777654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=8.4e-06  Score=81.40  Aligned_cols=204  Identities=10%  Similarity=0.151  Sum_probs=132.3

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC---
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK---  218 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg---  218 (496)
                      .|.|+  ++ ++..+|.|+.+|.|.+.+-.-.             .+..++.+..+.|..+....+..+|++.+.|+   
T Consensus        27 ~isc~--~s-~~~~vvigt~~G~V~~Ln~s~~-------------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~n   90 (933)
T KOG2114|consen   27 AISCC--SS-STGSVVIGTADGRVVILNSSFQ-------------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGN   90 (933)
T ss_pred             ceeEE--cC-CCceEEEeeccccEEEecccce-------------eeehheecchhhhhHhhcccCceEEEEEeecCCCC
Confidence            45554  56 6778999999999988875432             23456666664354444444446888877765   


Q ss_pred             --cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCe---ee----eecCCCceeEEEEccC
Q 010997          219 --SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR---GI----YNGHEDTVEDVTFCPS  289 (496)
Q Consensus       219 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~h~~~v~~l~~~~~  289 (496)
                        .|+||+++.......                                  ...+   +.    +.....++.+++.+.+
T Consensus        91 p~llkiw~lek~~~n~s----------------------------------P~c~~~~ri~~~~np~~~~p~s~l~Vs~~  136 (933)
T KOG2114|consen   91 PVLLKIWDLEKVDKNNS----------------------------------PQCLYEHRIFTIKNPTNPSPASSLAVSED  136 (933)
T ss_pred             ceEEEEecccccCCCCC----------------------------------cceeeeeeeeccCCCCCCCcceEEEEEcc
Confidence              499999985321000                                  0001   11    1123567888999888


Q ss_pred             CCceEEEEcCCCeEEEEEcc--CCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC-ce
Q 010997          290 SAQEFCSVGDDSCLILWDAR--VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP-IN  366 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~-~~  366 (496)
                      - ..+|+|-.+|.|..+.-.  ..+............+|+.+++.. ++..++-+..-..|.+|.+..      ..+ +.
T Consensus       137 l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~g------r~p~~~  208 (933)
T KOG2114|consen  137 L-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLSG------RTPSLK  208 (933)
T ss_pred             c-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEecC------CCccee
Confidence            6 789999999999998421  111112223334568999999987 666533333455799999885      233 44


Q ss_pred             EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      .+..|...+.|..|++....++ +++ +..+.+||....
T Consensus       209 ~ld~~G~~lnCss~~~~t~qfI-ca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  209 VLDNNGISLNCSSFSDGTYQFI-CAG-SEFLYFYDSDGR  245 (933)
T ss_pred             eeccCCccceeeecCCCCccEE-Eec-CceEEEEcCCCc
Confidence            5788889999999998766555 444 456999998864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.60  E-value=9.7e-08  Score=58.84  Aligned_cols=38  Identities=34%  Similarity=0.860  Sum_probs=34.8

Q ss_pred             CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997          363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  401 (496)
Q Consensus       363 ~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd  401 (496)
                      +++.++.+|...|++|+|+|++. +|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            46788999999999999999987 578999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.60  E-value=1.3e-06  Score=87.46  Aligned_cols=186  Identities=10%  Similarity=0.185  Sum_probs=131.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      ++..++-|+-...+..+|+.+.            +......-... .|+-++.  ++++|.+|...|+|.+-|.++    
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~------------~e~r~~~v~a~-~v~imR~--Nnr~lf~G~t~G~V~LrD~~s----  206 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTE------------KETRTTNVSAS-GVTIMRY--NNRNLFCGDTRGTVFLRDPNS----  206 (1118)
T ss_pred             CCcceeecchhhheeeeecccc------------eeeeeeeccCC-ceEEEEe--cCcEEEeecccceEEeecCCc----
Confidence            4456667777778888888876            22222222222 3555554  578899999999999998864    


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC---------CCe
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---------DSC  302 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---------dg~  302 (496)
                                                          .+.++.+..|++.|.++...  | ++|++||.         |..
T Consensus       207 ------------------------------------~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~F  247 (1118)
T KOG1275|consen  207 ------------------------------------FETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPF  247 (1118)
T ss_pred             ------------------------------------Cceeeeeeccccceeeeecc--C-CeEEEeecccccccccccch
Confidence                                                34458899999999988765  4 78888875         567


Q ss_pred             EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC
Q 010997          303 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP  382 (496)
Q Consensus       303 i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp  382 (496)
                      |+|||+|..+  .+....-+. ...-+.|.|.-...+++.+..|...+-|.......  ...+..+......+..+.+|+
T Consensus       248 vkVYDLRmmr--al~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSs  322 (1118)
T KOG1275|consen  248 VKVYDLRMMR--ALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISS  322 (1118)
T ss_pred             hhhhhhhhhh--ccCCccccc-CchhhhhcccccceEEEEecccceeeccccccCCC--ccceeEEccCCCcceeEEecC
Confidence            8999999877  233332222 23567888866788999999999999995443310  122333344456699999999


Q ss_pred             CCCCEEEEEeCCCcEEEEE
Q 010997          383 DKSSVFGSSAEDGLLNIWD  401 (496)
Q Consensus       383 ~~~~llas~~~dg~i~iwd  401 (496)
                      ++. .+|-|..+|.|.+|-
T Consensus       323 n~~-alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  323 NGD-ALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCc-eEEEecccCcEeeec
Confidence            999 578999999999998

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=5.7e-07  Score=82.89  Aligned_cols=220  Identities=10%  Similarity=0.058  Sum_probs=151.4

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~  215 (496)
                      ..-|.+.|+.+...  -.+++.+++.||.++.|--....         -...+..+..|.. .|.+++.+-++.++.|++
T Consensus         5 symhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~is---------GvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~   72 (558)
T KOG0882|consen    5 SYMHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRIS---------GVEFVKHFRAHLG-VILSLAVSYDGWLFRSVE   72 (558)
T ss_pred             hhcccceeeeEeee--hhheEEeeecchhhhhcCCCCcc---------ceeehhhhHHHHH-HHHhhhccccceeEeecc
Confidence            35688888888654  45799999999999999865421         1244556677877 788999999999999977


Q ss_pred             C-CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC--c
Q 010997          216 K-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA--Q  292 (496)
Q Consensus       216 ~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~--~  292 (496)
                      . |..++++|+++-......                                      .+..-.+.+. ...++...  .
T Consensus        73 d~Dhs~KvfDvEn~Dminmi--------------------------------------KL~~lPg~a~-wv~skGd~~s~  113 (558)
T KOG0882|consen   73 DPDHSVKVFDVENFDMINMI--------------------------------------KLVDLPGFAE-WVTSKGDKISL  113 (558)
T ss_pred             CcccceeEEEeeccchhhhc--------------------------------------ccccCCCceE-EecCCCCeeee
Confidence            7 999999999853221100                                      0000011111 11122211  1


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC----CCCCC-----CCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN----LTSNG-----VGS  363 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~----~~~~~-----~~~  363 (496)
                      +-++.-.++.+.++|-+...++......-|..+|.++.++| .+..+++....|.|..|....    +....     ...
T Consensus       114 IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT  192 (558)
T KOG0882|consen  114 IAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET  192 (558)
T ss_pred             EEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccc
Confidence            23334467999999998877666666678999999999999 899999999999999998773    11000     011


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  408 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~  408 (496)
                      -+..+........++.|+|++.. +++-+.|..|+++++.++.-.
T Consensus       193 dLy~f~K~Kt~pts~Efsp~g~q-istl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  193 DLYGFPKAKTEPTSFEFSPDGAQ-ISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             hhhcccccccCccceEEccccCc-ccccCcccEEEEEEeccchhh
Confidence            12223334567889999999996 578889999999999885433

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.58  E-value=9.9e-06  Score=73.66  Aligned_cols=216  Identities=14%  Similarity=0.166  Sum_probs=131.5

Q ss_pred             eeeecC-CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997          201 ALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  279 (496)
Q Consensus       201 ~l~~~p-~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  279 (496)
                      +..|.+ ++.++++-...+.|..|+..++..                                         ..+...  
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-----------------------------------------~~~~~~--   40 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-----------------------------------------EVIDLP--   40 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE-----------------------------------------EEEESS--
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-----------------------------------------EEEecC--
Confidence            678888 666777777889999999876432                                         112211  


Q ss_pred             ceeEEEEc-cCCCceEEEEcCCCeEEEEEccCCCccceeeec--c-CCCCeEEEEecCCCCcEEEEEcCC--------Cc
Q 010997          280 TVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--A-HDADLHCVDWNPLDDNLILTGSAD--------NS  347 (496)
Q Consensus       280 ~v~~l~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~-~~~~v~~i~~sp~~~~~l~sgs~d--------g~  347 (496)
                      ....+.+. +++ . |+.+.. +.+.++|..+++...+....  . .....+.++++| ++++.++....        |.
T Consensus        41 ~~~G~~~~~~~g-~-l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~  116 (246)
T PF08450_consen   41 GPNGMAFDRPDG-R-LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGS  116 (246)
T ss_dssp             SEEEEEEECTTS-E-EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEE
T ss_pred             CCceEEEEccCC-E-EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccc
Confidence            26677777 554 4 444444 44555698887632222221  1 346789999999 88877776544        44


Q ss_pred             EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997          348 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  427 (496)
Q Consensus       348 i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (496)
                      |..++...       . +..+...-...+.|+|+|+++.|+++-+..+.|..+++...+...        .....+....
T Consensus       117 v~~~~~~~-------~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--------~~~~~~~~~~  180 (246)
T PF08450_consen  117 VYRIDPDG-------K-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL--------SNRRVFIDFP  180 (246)
T ss_dssp             EEEEETTS-------E-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE--------EEEEEEEE-S
T ss_pred             eEEECCCC-------e-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccce--------eeeeeEEEcC
Confidence            66666552       2 222222345678999999999888788888999999987532211        0112233333


Q ss_pred             CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997          428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  494 (496)
Q Consensus       428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~  494 (496)
                      +-.+..-.+++..+|...++..+        .+.|.+++..       ++.+..+......+++|+|
T Consensus       181 ~~~g~pDG~~vD~~G~l~va~~~--------~~~I~~~~p~-------G~~~~~i~~p~~~~t~~~f  232 (246)
T PF08450_consen  181 GGPGYPDGLAVDSDGNLWVADWG--------GGRIVVFDPD-------GKLLREIELPVPRPTNCAF  232 (246)
T ss_dssp             SSSCEEEEEEEBTTS-EEEEEET--------TTEEEEEETT-------SCEEEEEE-SSSSEEEEEE
T ss_pred             CCCcCCCcceEcCCCCEEEEEcC--------CCEEEEECCC-------ccEEEEEcCCCCCEEEEEE
Confidence            33334678999998764443322        2789999887       4455555544446777777

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.6e-06  Score=80.08  Aligned_cols=228  Identities=11%  Similarity=0.056  Sum_probs=146.6

Q ss_pred             CCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997          194 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  273 (496)
Q Consensus       194 h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (496)
                      |.+ .|+.+.- ...+++++++.||.++.|.-..-                                     .-.+.+..
T Consensus         8 hrd-~i~hv~~-tka~fiiqASlDGh~KFWkKs~i-------------------------------------sGvEfVKh   48 (558)
T KOG0882|consen    8 HRD-VITHVFP-TKAKFIIQASLDGHKKFWKKSRI-------------------------------------SGVEFVKH   48 (558)
T ss_pred             ccc-eeeeEee-ehhheEEeeecchhhhhcCCCCc-------------------------------------cceeehhh
Confidence            444 4444433 34679999999999999975420                                     11122355


Q ss_pred             eecCCCceeEEEEccCCCceEEEEcC-CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCC-cEEEE-EcCCCcEEE
Q 010997          274 YNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD-NLILT-GSADNSVRM  350 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~-~~l~s-gs~dg~i~i  350 (496)
                      +..|...|.+++.+-++ .++.|++. |..++++|+.+-.......+.--...+. ...+|.+. ..+|+ .-.+|.|.+
T Consensus        49 FraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~V  126 (558)
T KOG0882|consen   49 FRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFV  126 (558)
T ss_pred             hHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEE
Confidence            67788999999999998 88999888 9999999998866322222212222222 22233111 23443 345789999


Q ss_pred             EeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCC--CCCCeeEEEecC
Q 010997          351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT--NYPAGLFFQHAG  428 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~  428 (496)
                      +|-+...    .+....-.-|..+|..+.++|.+.. +++....|-|.-|.....  .+.......  .....-++.+..
T Consensus       127 vD~~~d~----~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~--~qfPr~~l~~~~K~eTdLy~f~K  199 (558)
T KOG0882|consen  127 VDGFGDF----CQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGP--FQFPRTNLNFELKHETDLYGFPK  199 (558)
T ss_pred             ECCcCCc----CccceecccccCceEEEEeeccccc-eeeccccceeEeecCCCc--ccCccccccccccccchhhcccc
Confidence            9988632    3445555679999999999999985 458888899999998731  110000000  011122333344


Q ss_pred             CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH
Q 010997          429 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  483 (496)
Q Consensus       429 h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~  483 (496)
                      ......++.|+|++..+.        +-+.|..|+++.+.      ++.++++++
T Consensus       200 ~Kt~pts~Efsp~g~qis--------tl~~DrkVR~F~~K------tGklvqeiD  240 (558)
T KOG0882|consen  200 AKTEPTSFEFSPDGAQIS--------TLNPDRKVRGFVFK------TGKLVQEID  240 (558)
T ss_pred             cccCccceEEccccCccc--------ccCcccEEEEEEec------cchhhhhhh
Confidence            456788999999887644        33456999999998      677777765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=7.2e-06  Score=74.82  Aligned_cols=78  Identities=10%  Similarity=0.074  Sum_probs=65.2

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEec
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGG  215 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~  215 (496)
                      .+|...|..++|+|.+.-++..++.+..|.|.|+++.            ..+..+..|.  .+++++|.-+. .+|..|.
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~------------~~vssy~a~~--~~wSC~wDlde~h~IYaGl  255 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS------------CVVSSYIAYN--QIWSCCWDLDERHVIYAGL  255 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEecccc------------eeeeheeccC--CceeeeeccCCcceeEEec
Confidence            4577899999999976668999999999999999988            4455566663  58999998875 4788999


Q ss_pred             CCCcEEEEecCCc
Q 010997          216 KDKSVVLWSIQDH  228 (496)
Q Consensus       216 ~Dg~i~iwd~~~~  228 (496)
                      ..|.|.|+|++..
T Consensus       256 ~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  256 QNGMVLVYDMRQP  268 (463)
T ss_pred             cCceEEEEEccCC
Confidence            9999999999864

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.53  E-value=2.4e-06  Score=85.57  Aligned_cols=155  Identities=14%  Similarity=0.217  Sum_probs=113.5

Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC---------CCcEEE
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVRM  350 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~---------dg~i~i  350 (496)
                      .|.-++.+  + .++.+|...|+|.+-|.++.+  .+..+.+|.+.|..+..   .|++|++++.         |..|++
T Consensus       179 ~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~--~iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkV  250 (1118)
T KOG1275|consen  179 GVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFE--TIHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKV  250 (1118)
T ss_pred             ceEEEEec--C-cEEEeecccceEEeecCCcCc--eeeeeeccccceeeeec---cCCeEEEeecccccccccccchhhh
Confidence            35444443  3 689999999999999999888  78889999999988776   5788888874         556899


Q ss_pred             EeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC
Q 010997          351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  430 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  430 (496)
                      ||+|+++      .+..+.-+.++ .-+.|+|.-...+|.++..|...+-|....+.           |+.-++....-.
T Consensus       251 YDLRmmr------al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN-----------P~~~~~~v~p~~  312 (1118)
T KOG1275|consen  251 YDLRMMR------ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN-----------PPAGVKMVNPNG  312 (1118)
T ss_pred             hhhhhhh------ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC-----------CccceeEEccCC
Confidence            9999954      44444444444 56889998777788899999999999554322           222233333334


Q ss_pred             CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          431 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       431 ~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ..+..+++++++..++        -|..+|.|.+|.-.
T Consensus       313 s~i~~fDiSsn~~ala--------fgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  313 SGISAFDISSNGDALA--------FGDHEGHVNLWADR  342 (1118)
T ss_pred             CcceeEEecCCCceEE--------EecccCcEeeecCC
Confidence            5599999999888665        45567999999854

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.53  E-value=2.4e-07  Score=57.02  Aligned_cols=38  Identities=18%  Similarity=0.506  Sum_probs=35.1

Q ss_pred             CCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEE
Q 010997          269 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD  307 (496)
Q Consensus       269 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  307 (496)
                      +++..+.+|.+.|++|+|+|++ .+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            3467899999999999999997 8999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.45  E-value=6.1e-05  Score=72.81  Aligned_cols=151  Identities=16%  Similarity=0.299  Sum_probs=98.7

Q ss_pred             ceeEEEEccCCCceEEEE----cCCCe----EEEEEccCCCcc-ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEE
Q 010997          280 TVEDVTFCPSSAQEFCSV----GDDSC----LILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  350 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~----~~dg~----i~iwd~~~~~~~-~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~i  350 (496)
                      ...++.|+...++.+.|.    +.+|.    -.+|++...+.. ...+.....+.|.|.+++| +...|+.|+.||.|.+
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL  285 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL  285 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence            346777877555666654    23443    345666544311 1222336788999999999 9999999999999999


Q ss_pred             EeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe--eEEEecC
Q 010997          351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG--LFFQHAG  428 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~  428 (496)
                      ||...      +  +..+....-.++.++|+|+|. +|++|+..|.+.+||+.-..-.... -.++..|..  -+..+..
T Consensus       286 yD~~~------~--~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qL-lsEd~~P~~~L~Ls~yf~  355 (545)
T PF11768_consen  286 YDTTR------G--VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQL-LSEDATPKSTLQLSKYFR  355 (545)
T ss_pred             EEcCC------C--eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceee-ccccCCCccEEeeehhcc
Confidence            99886      2  333334556789999999999 6779999999999999763221111 111112222  1223344


Q ss_pred             CCCCcceEEecCC
Q 010997          429 HRDKVVDFHWNAS  441 (496)
Q Consensus       429 h~~~V~~~~~~p~  441 (496)
                      +...+..+.|.+.
T Consensus       356 ~~~~L~~iqW~~~  368 (545)
T PF11768_consen  356 VSSSLVHIQWAPA  368 (545)
T ss_pred             CcchhheeEeccC
Confidence            5667888999853

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=1.9e-05  Score=78.35  Aligned_cols=189  Identities=13%  Similarity=0.208  Sum_probs=122.7

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      .++|++++  +++|+-|..+|.|++.+.+...                                          .....|
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~------------------------------------------~~~~~~   76 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP------------------------------------------KTNFDH   76 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCcc------------------------------------------cccccc
Confidence            45667764  5789999999999999876321                                          111223


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC----CCcEEEEEcCCCcEEEEeC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL----DDNLILTGSADNSVRMFDR  353 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~----~~~~l~sgs~dg~i~iwd~  353 (496)
                      +..      ..+| .+++||+.||+|.|-.+-+.+.  .... ....++.+|+++|+    ....+++|+.-| +.++.-
T Consensus        77 s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~--~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er  145 (846)
T KOG2066|consen   77 SSS------ILEG-EYVASCSDDGKVVIGSLFTDDE--ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSER  145 (846)
T ss_pred             ccc------ccCC-ceEEEecCCCcEEEeeccCCcc--ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehh
Confidence            322      4456 7899999999999999888772  3322 45678999999993    257899999999 888765


Q ss_pred             CCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc
Q 010997          354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  433 (496)
Q Consensus       354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  433 (496)
                      +-+.    ...-..+..-.++|.++.|..+   ++|=++.+ -|+|||+.............. .+.        -...-
T Consensus       146 ~wlg----nk~~v~l~~~eG~I~~i~W~g~---lIAWand~-Gv~vyd~~~~~~l~~i~~p~~-~~R--------~e~fp  208 (846)
T KOG2066|consen  146 NWLG----NKDSVVLSEGEGPIHSIKWRGN---LIAWANDD-GVKVYDTPTRQRLTNIPPPSQ-SVR--------PELFP  208 (846)
T ss_pred             hhhc----CccceeeecCccceEEEEecCc---EEEEecCC-CcEEEeccccceeeccCCCCC-CCC--------cccCC
Confidence            5432    1112245556789999999744   67677655 499999988422221111110 000        01123


Q ss_pred             ceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          434 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       434 ~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ..+.|.++...++          |+.-+|+|..++
T Consensus       209 phl~W~~~~~LVI----------GW~d~v~i~~I~  233 (846)
T KOG2066|consen  209 PHLHWQDEDRLVI----------GWGDSVKICSIK  233 (846)
T ss_pred             CceEecCCCeEEE----------ecCCeEEEEEEe
Confidence            4578888655433          444689999888

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.42  E-value=0.00034  Score=63.51  Aligned_cols=205  Identities=13%  Similarity=0.178  Sum_probs=125.6

Q ss_pred             CceeEEEecCCCCcEEEEEeCCC-cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec----
Q 010997          141 GEVNRIRELPQNTKIVATHTDSP-DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----  215 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~----  215 (496)
                      .....++.+|..+..+|.+-.-| ...+||..++.....+.    ...-..|.||.       .|++||++|++.-    
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~----a~~gRHFyGHg-------~fs~dG~~LytTEnd~~   73 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW----APPGRHFYGHG-------VFSPDGRLLYTTENDYE   73 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc----CCCCCEEecCE-------EEcCCCCEEEEeccccC
Confidence            34456777887777888887766 47889998884332221    12334555552       5899999998863    


Q ss_pred             -CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          216 -KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       216 -~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                       ..|.|-|||....-                                       ..+..+..|.-.--.+.+.|++.. |
T Consensus        74 ~g~G~IgVyd~~~~~---------------------------------------~ri~E~~s~GIGPHel~l~pDG~t-L  113 (305)
T PF07433_consen   74 TGRGVIGVYDAARGY---------------------------------------RRIGEFPSHGIGPHELLLMPDGET-L  113 (305)
T ss_pred             CCcEEEEEEECcCCc---------------------------------------EEEeEecCCCcChhhEEEcCCCCE-E
Confidence             46899999997321                                       112334444444556677777733 3


Q ss_pred             EEE------------------cCCCeEEEEEccCCCccceeee--ccCCCCeEEEEecCCCCcEEEEEcCCCc-------
Q 010997          295 CSV------------------GDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNS-------  347 (496)
Q Consensus       295 ~s~------------------~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~sgs~dg~-------  347 (496)
                      +.+                  ..+-.+...|.++++..-...+  ..|.-.|..+++++ ++..++..-..|.       
T Consensus       114 vVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PL  192 (305)
T PF07433_consen  114 VVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPL  192 (305)
T ss_pred             EEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCe
Confidence            332                  1223455556666652111123  33667889999988 6665555433332       


Q ss_pred             EEEEeCCCCCCCCCCCCceEe-------ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          348 VRMFDRRNLTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       348 i~iwd~~~~~~~~~~~~~~~~-------~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      |.+++...        .+..+       ..-.+.|-+|++++++..+.+|+=..+.+.+||..+.
T Consensus       193 va~~~~g~--------~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg  249 (305)
T PF07433_consen  193 VALHRRGG--------ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG  249 (305)
T ss_pred             EEEEcCCC--------cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence            33333322        12222       2345789999999999977777777899999999884

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.42  E-value=1.6e-07  Score=93.24  Aligned_cols=205  Identities=15%  Similarity=0.222  Sum_probs=138.6

Q ss_pred             CCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997          185 SRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  264 (496)
Q Consensus       185 ~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (496)
                      .++..+++.|.. ..+|++|+.+.++|+.|+..|.|+++++.++...                                 
T Consensus      1091 Fr~w~~frd~~~-~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--------------------------------- 1136 (1516)
T KOG1832|consen 1091 FRSWRSFRDETA-LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--------------------------------- 1136 (1516)
T ss_pred             cccchhhhcccc-ceeeEEeecCCceEEeeeccceEEEEEccCcccc---------------------------------
Confidence            356667778876 5799999999999999999999999999876432                                 


Q ss_pred             CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC-eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc
Q 010997          265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  343 (496)
Q Consensus       265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs  343 (496)
                             ....+|..+|+-+.-+.+|..+|.+++... -..+|++.+.-. ..+.+    ..-.++.|+. .-+.-+.|+
T Consensus      1137 -------~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~-~~Hsf----~ed~~vkFsn-~~q~r~~gt 1203 (1516)
T KOG1832|consen 1137 -------ESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG-PRHSF----DEDKAVKFSN-SLQFRALGT 1203 (1516)
T ss_pred             -------ccccccccccccccccCCcceeeeeccccCchHHHhccccccC-ccccc----cccceeehhh-hHHHHHhcc
Confidence                   456789999999999999965555555554 577999876332 23333    2346788987 444445566


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCceEe-c---cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCC
Q 010997          344 ADNSVRMFDRRNLTSNGVGSPINKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  419 (496)
Q Consensus       344 ~dg~i~iwd~~~~~~~~~~~~~~~~-~---~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  419 (496)
                      .-....+||+.+      +.++.++ .   +....-+...|+|+...+|    .||.  +||++.. +            
T Consensus      1204 ~~d~a~~YDvqT------~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl----ndGv--LWDvR~~-~------------ 1258 (1516)
T KOG1832|consen 1204 EADDALLYDVQT------CSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL----NDGV--LWDVRIP-E------------ 1258 (1516)
T ss_pred             cccceEEEeccc------CcHHHHhcCcchhhhhhccccccCCCcceEe----eCce--eeeeccH-H------------
Confidence            667799999999      5666553 2   1222337889999998554    4664  7999874 1            


Q ss_pred             CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH
Q 010997          420 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  483 (496)
Q Consensus       420 ~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~  483 (496)
                        .+..+..... -..-.|+|+|..+++             .--|||++      +-..+..++
T Consensus      1259 --aIh~FD~ft~-~~~G~FHP~g~eVII-------------NSEIwD~R------TF~lLh~VP 1300 (1516)
T KOG1832|consen 1259 --AIHRFDQFTD-YGGGGFHPSGNEVII-------------NSEIWDMR------TFKLLHSVP 1300 (1516)
T ss_pred             --HHhhhhhhee-cccccccCCCceEEe-------------echhhhhH------HHHHHhcCc
Confidence              1111111111 112358999888775             23689988      555554443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=2.9e-05  Score=77.71  Aligned_cols=199  Identities=13%  Similarity=0.104  Sum_probs=128.2

Q ss_pred             eeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCce
Q 010997          202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV  281 (496)
Q Consensus       202 l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  281 (496)
                      -+|++.+..++.|+.+|.|.+.+-.-                                         ..++.+..+...+
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s~-----------------------------------------~~~~~fqa~~~si   67 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSSF-----------------------------------------QLIRGFQAYEQSI   67 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecccc-----------------------------------------eeeehheecchhh
Confidence            35677888999999999998887431                                         1123344555552


Q ss_pred             eEEEEccCCCceEEEEcCCC-----eEEEEEccCCC--c-ccee---eec-----cCCCCeEEEEecCCCCcEEEEEcCC
Q 010997          282 EDVTFCPSSAQEFCSVGDDS-----CLILWDARVGT--S-PVIK---VEK-----AHDADLHCVDWNPLDDNLILTGSAD  345 (496)
Q Consensus       282 ~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~--~-~~~~---~~~-----~~~~~v~~i~~sp~~~~~l~sgs~d  345 (496)
                      -..-+.-++..+|++.+.|+     .|+|||+...+  . |...   ...     ....++.+++.+. +-..+|+|-.+
T Consensus        68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~n  146 (933)
T KOG2114|consen   68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTN  146 (933)
T ss_pred             hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecC
Confidence            22333333436777776664     59999997642  1 2221   111     2356788999998 78999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCC-EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  424 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~-llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  424 (496)
                      |.|.++.-.-.+..  +....-...-..+|+.+++..++.. +||+.  -..|.+|.+...            .  ....
T Consensus       147 G~V~~~~GDi~RDr--gsr~~~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr------------~--p~~~  208 (933)
T KOG2114|consen  147 GLVICYKGDILRDR--GSRQDYSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGR------------T--PSLK  208 (933)
T ss_pred             cEEEEEcCcchhcc--ccceeeeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCC------------C--ccee
Confidence            99999853321111  1222222234679999999999887 34333  347999999853            1  2234


Q ss_pred             EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .+..|...+.+..+++....++++.+         ..|.+|+..+
T Consensus       209 ~ld~~G~~lnCss~~~~t~qfIca~~---------e~l~fY~sd~  244 (933)
T KOG2114|consen  209 VLDNNGISLNCSSFSDGTYQFICAGS---------EFLYFYDSDG  244 (933)
T ss_pred             eeccCCccceeeecCCCCccEEEecC---------ceEEEEcCCC
Confidence            46677778899999985554665444         5799999873

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.39  E-value=4.2e-05  Score=74.46  Aligned_cols=220  Identities=15%  Similarity=0.126  Sum_probs=114.5

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  232 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~  232 (496)
                      +..+++++.+|.|..+|..++..            .....-... ......  .++..++.++.+|.|..+|..++....
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~------------~W~~~~~~~-~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W  129 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKR------------LWRVDLDER-LSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELW  129 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcE------------eeeecCCCC-cccceE--EcCCEEEEEcCCCEEEEEECCCCcEee
Confidence            44677888889999999888732            222111111 111122  246678888889999999998886654


Q ss_pred             cCCccccccCCC--CCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCce-----eEEEEccCCCceEEEEcCCCeEEE
Q 010997          233 ATDPATAKSAGS--SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCSVGDDSCLIL  305 (496)
Q Consensus       233 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~i  305 (496)
                      ............  ....+..  ....+.+..++..+++.+-.+......+     .+....  + ..++.+..++.+..
T Consensus       130 ~~~~~~~~~~~p~v~~~~v~v--~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~a  204 (377)
T TIGR03300       130 RAKLSSEVLSPPLVANGLVVV--RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVA  204 (377)
T ss_pred             eeccCceeecCCEEECCEEEE--ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEE
Confidence            433221110000  0001111  1122334444444444333332211111     011111  2 35777888899999


Q ss_pred             EEccCCCccceeeecc-CC---CC---eEEEEecC-CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997          306 WDARVGTSPVIKVEKA-HD---AD---LHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  377 (496)
Q Consensus       306 wd~~~~~~~~~~~~~~-~~---~~---v~~i~~sp-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~  377 (496)
                      +|.++++  ....... ..   ..   +..+.-+| ..+..+.+++.+|.+..||..+      ++.+..... . ....
T Consensus       205 ld~~tG~--~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t------G~~~W~~~~-~-~~~~  274 (377)
T TIGR03300       205 LDLQTGQ--PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS------GRVLWKRDA-S-SYQG  274 (377)
T ss_pred             EEccCCC--EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC------CcEEEeecc-C-CccC
Confidence            9998887  2221110 00   00   00111111 0245677788899999999987      665554431 1 1122


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ...  .+..++ .++.||.|..+|..++
T Consensus       275 p~~--~~~~vy-v~~~~G~l~~~d~~tG  299 (377)
T TIGR03300       275 PAV--DDNRLY-VTDADGVVVALDRRSG  299 (377)
T ss_pred             ceE--eCCEEE-EECCCCeEEEEECCCC
Confidence            222  344454 6677999999999774

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.37  E-value=0.00098  Score=62.73  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=74.1

Q ss_pred             EEcc-CCCceEEEEcCCCeEEEEEccCCCcc---ceeeec-------cCCCCeEEEEecCCCCcEEEEEc----------
Q 010997          285 TFCP-SSAQEFCSVGDDSCLILWDARVGTSP---VIKVEK-------AHDADLHCVDWNPLDDNLILTGS----------  343 (496)
Q Consensus       285 ~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~-------~~~~~v~~i~~sp~~~~~l~sgs----------  343 (496)
                      .|.+ ++ ..+....+ |+|.+.|+......   ......       -....+.-++++| ++..+.+..          
T Consensus       200 ~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~  276 (352)
T TIGR02658       200 AYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKT  276 (352)
T ss_pred             ceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccC
Confidence            3455 66 44544444 99999997554311   111111       0233444599999 666665532          


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCC-CEEEEEeCCCcEEEEECCCC
Q 010997          344 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       344 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~llas~~~dg~i~iwd~~~~  405 (496)
                      ..+.|.++|..+      ++.+..+.. ...+..++++|+++ .++++...++.|.++|..+.
T Consensus       277 ~~~~V~ViD~~t------~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       277 ASRFLFVVDAKT------GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             CCCEEEEEECCC------CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            225799999998      677777763 55789999999999 77666667889999999874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.33  E-value=1.3e-05  Score=77.29  Aligned_cols=79  Identities=11%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .+..+.++..|.|++++| +...|+.|+.||+|.+||...+.              ..+....- ..+.++|+|+|..++
T Consensus       252 svtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~--------------t~~~ka~~-~P~~iaWHp~gai~~  315 (545)
T PF11768_consen  252 SVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGV--------------TLLAKAEF-IPTLIAWHPDGAIFV  315 (545)
T ss_pred             EEEEEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCe--------------eeeeeecc-cceEEEEcCCCcEEE
Confidence            456788999999999999 77889999999999999987762              11222222 457899999999999


Q ss_pred             EecCCCcEEEEecCC
Q 010997          213 SGGKDKSVVLWSIQD  227 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~  227 (496)
                      +|+.-|.+.+||+.-
T Consensus       316 V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  316 VGSEQGELQCFDMAL  330 (545)
T ss_pred             EEcCCceEEEEEeec
Confidence            999999999999864

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.30  E-value=1.7e-05  Score=78.35  Aligned_cols=115  Identities=19%  Similarity=0.291  Sum_probs=93.4

Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-----------CCcEEEEEcCCCcE
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-----------DDNLILTGSADNSV  348 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-----------~~~~l~sgs~dg~i  348 (496)
                      .-.++.|+|.|  +|+-|+. ..|.+-|.++-+  .+.....|...|+.+.|.|.           ..-+||++...|.|
T Consensus        17 N~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q--~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   17 NRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQ--LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             cccccccCccc--eEEEecC-ceEEEEehhhhh--hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            35678999988  5666654 678899998877  67778889999999999872           23467888889999


Q ss_pred             EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC---CCCEEEEEeCCCcEEEEECCCC
Q 010997          349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~---~~~llas~~~dg~i~iwd~~~~  405 (496)
                      .+||...      +..+..+..|..++..++|-|.   .+.+|++-.....|.+|+..++
T Consensus        92 il~d~~~------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG  145 (1062)
T KOG1912|consen   92 ILVDFVL------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG  145 (1062)
T ss_pred             EEEEehh------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC
Confidence            9999998      7788889999999999999873   4356666666789999999886

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.27  E-value=0.00023  Score=69.25  Aligned_cols=220  Identities=16%  Similarity=0.089  Sum_probs=110.9

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      ++..++.++.+|.++.+|..++....            ....  ...+.+.... .+..++.++.+|.|..||.+++...
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W------------~~~~--~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~  168 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELW------------RAKL--SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERL  168 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEee------------eecc--CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCcee
Confidence            34567778889999999998873221            1111  1111111111 2446777778999999999887664


Q ss_pred             ccCCcccccc---CCCCC----ceeccCCCCCCCCCCCCCCCCcCCeeeeecC-----C--CceeEEEEcc--CCCceEE
Q 010997          232 SATDPATAKS---AGSSG----SIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-----E--DTVEDVTFCP--SSAQEFC  295 (496)
Q Consensus       232 ~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~--~~v~~l~~~~--~~~~~l~  295 (496)
                      ..........   .....    ..+...  ...+.+...+..+++.+......     .  .....+.-+|  .+ ..++
T Consensus       169 W~~~~~~~~~~~~~~~sp~~~~~~v~~~--~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~-~~vy  245 (377)
T TIGR03300       169 WTYSRVTPALTLRGSASPVIADGGVLVG--FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG-GQVY  245 (377)
T ss_pred             eEEccCCCceeecCCCCCEEECCEEEEE--CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC-CEEE
Confidence            4332211100   00000    001110  11112222222222211111000     0  0000000011  12 4677


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC-C
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-A  374 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~  374 (496)
                      .++.+|.+..||..+++  ...... .. .......   .+..+++++.+|.|..+|..+      +..+........ .
T Consensus       246 ~~~~~g~l~a~d~~tG~--~~W~~~-~~-~~~~p~~---~~~~vyv~~~~G~l~~~d~~t------G~~~W~~~~~~~~~  312 (377)
T TIGR03300       246 AVSYQGRVAALDLRSGR--VLWKRD-AS-SYQGPAV---DDNRLYVTDADGVVVALDRRS------GSELWKNDELKYRQ  312 (377)
T ss_pred             EEEcCCEEEEEECCCCc--EEEeec-cC-CccCceE---eCCEEEEECCCCeEEEEECCC------CcEEEccccccCCc
Confidence            78889999999998887  333222 11 1122222   456777888999999999987      655544422111 1


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ..+...  .+.. +++++.+|.|+++|..++
T Consensus       313 ~ssp~i--~g~~-l~~~~~~G~l~~~d~~tG  340 (377)
T TIGR03300       313 LTAPAV--VGGY-LVVGDFEGYLHWLSREDG  340 (377)
T ss_pred             cccCEE--ECCE-EEEEeCCCEEEEEECCCC
Confidence            222222  2443 457888999999998774

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.25  E-value=2.2e-06  Score=85.45  Aligned_cols=175  Identities=12%  Similarity=0.195  Sum_probs=125.2

Q ss_pred             cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC-
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-  346 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg-  346 (496)
                      ..+...|..|....+|++|+-.. +.|+.|+..|.|++|++.++.  .......|.++|+.+.-+. ++.++++.+.-. 
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred             cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCcc--ccccccccccccccccccC-CcceeeeeccccC
Confidence            34556778889999999999887 799999999999999999988  4455678999999999888 777766655443 


Q ss_pred             -cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997          347 -SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  425 (496)
Q Consensus       347 -~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  425 (496)
                       -..+|++.+.     +.+.++|..    -.++.|+..-..- +.|..-....|||+.+....++.           +..
T Consensus      1167 PlsaLW~~~s~-----~~~~Hsf~e----d~~vkFsn~~q~r-~~gt~~d~a~~YDvqT~~~l~ty-----------lt~ 1225 (1516)
T KOG1832|consen 1167 PLSALWDASST-----GGPRHSFDE----DKAVKFSNSLQFR-ALGTEADDALLYDVQTCSPLQTY-----------LTD 1225 (1516)
T ss_pred             chHHHhccccc-----cCccccccc----cceeehhhhHHHH-HhcccccceEEEecccCcHHHHh-----------cCc
Confidence             4789999873     577787764    2477888764432 23444456899999996544331           111


Q ss_pred             ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc
Q 010997          426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  486 (496)
Q Consensus       426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~  486 (496)
                      ..+..-.=+...|+|++..++             +.=-+||++      ..+.+..+...+
T Consensus      1226 ~~~~~y~~n~a~FsP~D~LIl-------------ndGvLWDvR------~~~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCDTLIL-------------NDGVLWDVR------IPEAIHRFDQFT 1267 (1516)
T ss_pred             chhhhhhccccccCCCcceEe-------------eCceeeeec------cHHHHhhhhhhe
Confidence            111112236788999888766             344679999      567788877665

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.24  E-value=0.00034  Score=62.45  Aligned_cols=209  Identities=16%  Similarity=0.271  Sum_probs=117.5

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      +-..++..|+|.|+++.++|+....+.|...+.+...           .....+.+..+  .-+|++..++.++++--++
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~v-----------lr~i~l~g~~D--~EgI~y~g~~~~vl~~Er~   85 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKV-----------LRRIPLDGFGD--YEGITYLGNGRYVLSEERD   85 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--E-----------EEEEE-SS-SS--EEEEEE-STTEEEEEETTT
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCE-----------EEEEeCCCCCC--ceeEEEECCCEEEEEEcCC
Confidence            4455799999999778888888888999888875321           11123455444  4689998888888877789


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCe--eeeecCCCceeEEEEccCCCceEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR--GIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      +.+.+.++...........                               ...+  .....+...+..++|.|.+ +.|+
T Consensus        86 ~~L~~~~~~~~~~~~~~~~-------------------------------~~~~~l~~~~~~N~G~EGla~D~~~-~~L~  133 (248)
T PF06977_consen   86 QRLYIFTIDDDTTSLDRAD-------------------------------VQKISLGFPNKGNKGFEGLAYDPKT-NRLF  133 (248)
T ss_dssp             TEEEEEEE----TT--EEE-------------------------------EEEEE---S---SS--EEEEEETTT-TEEE
T ss_pred             CcEEEEEEeccccccchhh-------------------------------ceEEecccccCCCcceEEEEEcCCC-CEEE
Confidence            9999999854321110000                               0000  0112355678999999988 4555


Q ss_pred             EEcCCCeEEEEEccC--CCccc-eee------eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997          296 SVGDDSCLILWDARV--GTSPV-IKV------EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  366 (496)
Q Consensus       296 s~~~dg~i~iwd~~~--~~~~~-~~~------~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  366 (496)
                      .+-+..-..||.++.  ..... ...      .......+.+++++|..+.+++.+..+..|..+|..       +.++.
T Consensus       134 v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-------G~~~~  206 (248)
T PF06977_consen  134 VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-------GRVVS  206 (248)
T ss_dssp             EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---------EEE
T ss_pred             EEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-------CCEEE
Confidence            566666677777764  11111 111      112445688999999888999999999999999944       56555


Q ss_pred             EeccCC---------CCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 010997          367 KFEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIW  400 (496)
Q Consensus       367 ~~~~h~---------~~i~~l~~sp~~~~llas~~~dg~i~iw  400 (496)
                      .+.-..         ...-.|+|.++|. |+ ..++-+..++|
T Consensus       207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LY-IvsEpNlfy~f  247 (248)
T PF06977_consen  207 SLSLDRGFHGLSKDIPQPEGIAFDPDGN-LY-IVSEPNLFYRF  247 (248)
T ss_dssp             EEE-STTGGG-SS---SEEEEEE-TT---EE-EEETTTEEEEE
T ss_pred             EEEeCCcccCcccccCCccEEEECCCCC-EE-EEcCCceEEEe
Confidence            443222         3567899999986 66 44455555444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.10  E-value=0.0012  Score=69.02  Aligned_cols=205  Identities=11%  Similarity=0.221  Sum_probs=123.9

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      .|.++.|..+.+.++.+..+|.|.+-|.++...                                         .....-
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-----------------------------------------eivg~v  108 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLEL-----------------------------------------EIVGNV  108 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEcccccce-----------------------------------------eeeeec
Confidence            588999999988888888899999998775432                                         122234


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEcc----CCCc----------c-------ceeeecc---------------
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR----VGTS----------P-------VIKVEKA---------------  321 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~----~~~~----------~-------~~~~~~~---------------  321 (496)
                      ...|.+++|+|+. ..++..+..+++.+-+-.    ..+.          .       ....+.+               
T Consensus       109 d~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek  187 (1265)
T KOG1920|consen  109 DNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK  187 (1265)
T ss_pred             cCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence            5689999999998 677777777777665431    0000          0       0001110               


Q ss_pred             ------CCCCeEEEEecCCCCcEEEEE-----cCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEE
Q 010997          322 ------HDADLHCVDWNPLDDNLILTG-----SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS  390 (496)
Q Consensus       322 ------~~~~v~~i~~sp~~~~~l~sg-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas  390 (496)
                            -.+.=+.|.|-- +|.++|+.     .....|++||..-       ..-..-..-.+.=.+++|-|.|. ++|+
T Consensus       188 ~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drEg-------~Lns~se~~~~l~~~LsWkPsgs-~iA~  258 (1265)
T KOG1920|consen  188 ALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDREG-------ALNSTSEPVEGLQHSLSWKPSGS-LIAA  258 (1265)
T ss_pred             cccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEecccc-------hhhcccCcccccccceeecCCCC-eEee
Confidence                  011123588887 89999983     3337899999762       11111111223335899999988 4555


Q ss_pred             Ee---CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          391 SA---EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       391 ~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      -.   .|+.|.+|.-+....            .............|..++|+.++..|++-.+     ......|++|-+
T Consensus       259 iq~~~sd~~IvffErNGL~h------------g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~-----~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  259 IQCKTSDSDIVFFERNGLRH------------GEFVLPFPLDEKEVEELAWNSNSDILAVVTS-----NLENSLVQLWTT  321 (1265)
T ss_pred             eeecCCCCcEEEEecCCccc------------cccccCCcccccchheeeecCCCCceeeeec-----ccccceEEEEEe
Confidence            43   366788888654211            0111111222334899999998776554221     222345999998


Q ss_pred             CCC
Q 010997          468 SDL  470 (496)
Q Consensus       468 ~~~  470 (496)
                      .+-
T Consensus       322 ~Ny  324 (1265)
T KOG1920|consen  322 GNY  324 (1265)
T ss_pred             cCe
Confidence            753

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.08  E-value=0.0016  Score=58.75  Aligned_cols=212  Identities=13%  Similarity=0.093  Sum_probs=116.1

Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCC-CCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK  240 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~-~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~  240 (496)
                      +|+|..||..++.            .+....--. .....+ ...+++.++++++.++.|..||..+++.......    
T Consensus         2 ~g~l~~~d~~tG~------------~~W~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~----   64 (238)
T PF13360_consen    2 DGTLSALDPRTGK------------ELWSYDLGPGIGGPVA-TAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL----   64 (238)
T ss_dssp             TSEEEEEETTTTE------------EEEEEECSSSCSSEEE-TEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC----
T ss_pred             CCEEEEEECCCCC------------EEEEEECCCCCCCccc-eEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec----
Confidence            6788889987772            222222100 111111 1333566788888899999999987755332211    


Q ss_pred             cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceee-e
Q 010997          241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-E  319 (496)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~  319 (496)
                                                           ...+....... + ..++.++.++.|..+|..+++  .... .
T Consensus        65 -------------------------------------~~~~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~--~~W~~~  103 (238)
T PF13360_consen   65 -------------------------------------PGPISGAPVVD-G-GRVYVGTSDGSLYALDAKTGK--VLWSIY  103 (238)
T ss_dssp             -------------------------------------SSCGGSGEEEE-T-TEEEEEETTSEEEEEETTTSC--EEEEEE
T ss_pred             -------------------------------------cccccceeeec-c-cccccccceeeeEecccCCcc--eeeeec
Confidence                                                 11111111222 2 346666678899999999988  3333 2


Q ss_pred             ccCC---CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC----------E-EEEEEcCCCC
Q 010997          320 KAHD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA----------V-LCVQWSPDKS  385 (496)
Q Consensus       320 ~~~~---~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~----------i-~~l~~sp~~~  385 (496)
                      ....   .......... .+..++++..++.|..+|+++      +..+.........          + ..+.+. ++ 
T Consensus       104 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  174 (238)
T PF13360_consen  104 LTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKT------GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-  174 (238)
T ss_dssp             E-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTT------TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-
T ss_pred             cccccccccccccCceE-ecCEEEEEeccCcEEEEecCC------CcEEEEeecCCCCCCcceeeecccccceEEE-CC-
Confidence            2211   1111222222 367788888899999999998      7777766553322          1 233333 34 


Q ss_pred             CEEEEEeCCCc-EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEE
Q 010997          386 SVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI  464 (496)
Q Consensus       386 ~llas~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~i  464 (496)
                      .++ .++.++. +.+ |+.+.               ..+....  ...+..+ ....+..+++.. .       ++.|..
T Consensus       175 ~v~-~~~~~g~~~~~-d~~tg---------------~~~w~~~--~~~~~~~-~~~~~~~l~~~~-~-------~~~l~~  226 (238)
T PF13360_consen  175 RVY-VSSGDGRVVAV-DLATG---------------EKLWSKP--ISGIYSL-PSVDGGTLYVTS-S-------DGRLYA  226 (238)
T ss_dssp             EEE-EECCTSSEEEE-ETTTT---------------EEEEEEC--SS-ECEC-EECCCTEEEEEE-T-------TTEEEE
T ss_pred             EEE-EEcCCCeEEEE-ECCCC---------------CEEEEec--CCCccCC-ceeeCCEEEEEe-C-------CCEEEE
Confidence            455 4555665 555 98885               2223222  1223321 234466666433 3       499999


Q ss_pred             eecC
Q 010997          465 WRMS  468 (496)
Q Consensus       465 w~~~  468 (496)
                      ||+.
T Consensus       227 ~d~~  230 (238)
T PF13360_consen  227 LDLK  230 (238)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9998

...

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.07  E-value=0.00055  Score=62.17  Aligned_cols=203  Identities=15%  Similarity=0.210  Sum_probs=120.5

Q ss_pred             eeeeecCC-CCceEEecCCC-cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          200 FALAMCPT-EPYVLSGGKDK-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       200 ~~l~~~p~-~~~l~sg~~Dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      .+++.+|. ...++.+-+-| ...+||..++........                                ..-+.|.+|
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a--------------------------------~~gRHFyGH   55 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA--------------------------------PPGRHFYGH   55 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC--------------------------------CCCCEEecC
Confidence            45677784 44555665555 467788887654322211                                112567777


Q ss_pred             CCceeEEEEccCCCceEEEEc-----CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC--------
Q 010997          278 EDTVEDVTFCPSSAQEFCSVG-----DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA--------  344 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~--------  344 (496)
                      .      .|+++| .+|++.-     ..|.|-|||....- ..+-.+..|.-....+.+.| ++..|+++-.        
T Consensus        56 g------~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~-~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~  126 (305)
T PF07433_consen   56 G------VFSPDG-RLLYTTENDYETGRGVIGVYDAARGY-RRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDS  126 (305)
T ss_pred             E------EEcCCC-CEEEEeccccCCCcEEEEEEECcCCc-EEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCccc
Confidence            4      699999 5566543     35899999998332 24555666766778889999 8866666531        


Q ss_pred             ----------CCcEEEEeCCCCCCCCCCCCceE--e--ccCCCCEEEEEEcCCCCCEEEEEeC-CCc-------EEEEEC
Q 010997          345 ----------DNSVRMFDRRNLTSNGVGSPINK--F--EGHSAAVLCVQWSPDKSSVFGSSAE-DGL-------LNIWDY  402 (496)
Q Consensus       345 ----------dg~i~iwd~~~~~~~~~~~~~~~--~--~~h~~~i~~l~~sp~~~~llas~~~-dg~-------i~iwd~  402 (496)
                                +..+.+.|.++      +..+..  +  .-|..+|..+++.++|. ++ .+.. .|.       |-+++.
T Consensus       127 GR~kLNl~tM~psL~~ld~~s------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~-V~-~a~Q~qg~~~~~~PLva~~~~  198 (305)
T PF07433_consen  127 GRAKLNLDTMQPSLVYLDARS------GALLEQVELPPDLHQLSIRHLAVDGDGT-VA-FAMQYQGDPGDAPPLVALHRR  198 (305)
T ss_pred             CceecChhhcCCceEEEecCC------CceeeeeecCccccccceeeEEecCCCc-EE-EEEecCCCCCccCCeEEEEcC
Confidence                      12333444444      555555  3  33778899999999986 33 3432 211       222222


Q ss_pred             CCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          403 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ...   .....    .+...   ...-.+.|-+|++++++..+++|+=.-       |.+.+||..
T Consensus       199 g~~---~~~~~----~p~~~---~~~l~~Y~gSIa~~~~g~~ia~tsPrG-------g~~~~~d~~  247 (305)
T PF07433_consen  199 GGA---LRLLP----APEEQ---WRRLNGYIGSIAADRDGRLIAVTSPRG-------GRVAVWDAA  247 (305)
T ss_pred             CCc---ceecc----CChHH---HHhhCCceEEEEEeCCCCEEEEECCCC-------CEEEEEECC
Confidence            210   00000    00011   122345788999999988888766554       999999988

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.98  E-value=0.00036  Score=71.88  Aligned_cols=136  Identities=15%  Similarity=0.216  Sum_probs=93.3

Q ss_pred             CCCCCCCCCCcCCeeeeecCCCc-eeEEEEccC----CCceEEEEcCCCeEEEEEccCCCccceee---eccCCCCeEEE
Q 010997          258 GNDKAADGPSVGPRGIYNGHEDT-VEDVTFCPS----SAQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADLHCV  329 (496)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~i  329 (496)
                      ..+...+...++.+..+..|... |.+++-...    .+.-.+.|-.+..+..||.|-....++..   .........|+
T Consensus       504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~  583 (794)
T PF08553_consen  504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF  583 (794)
T ss_pred             CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence            34555667777777777777644 554432210    11235667778899999999754222211   11345567888


Q ss_pred             EecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997          330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  403 (496)
Q Consensus       330 ~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~  403 (496)
                      +-+.  ..+||+|+.+|.|||||--.      ...-..+.+-..+|..|..+.||++|||||  +..+.+++..
T Consensus       584 aTt~--~G~iavgs~~G~IRLyd~~g------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t~  647 (794)
T PF08553_consen  584 ATTE--DGYIAVGSNKGDIRLYDRLG------KRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDTL  647 (794)
T ss_pred             EecC--CceEEEEeCCCcEEeecccc------hhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence            8775  67899999999999999432      233445567789999999999999998777  5678888874

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.93  E-value=0.00036  Score=67.20  Aligned_cols=148  Identities=13%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccc-cCCccccccCCCCCceeccCCC-CCCCCCCCCCC------CCcC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS-ATDPATAKSAGSSGSIIKQSPK-PGDGNDKAADG------PSVG  269 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~  269 (496)
                      .|+.+.|.++...|+.|...|.|.||.....+... ...+......     ....... .......+.+.      ....
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~di~~r~~~~~~~gf~   77 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYN-----FRRFSLNNSPGKLTDISDRAPPSLKEGFL   77 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S--GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcc-----cccccccCCCcceEEehhhCCcccccccC
Confidence            47889999998899999999999999887643322 0000000000     0000000 00000000000      1134


Q ss_pred             CeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceee--ec------cCCCCeEEEEecC-------C
Q 010997          270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV--EK------AHDADLHCVDWNP-------L  334 (496)
Q Consensus       270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~------~~~~~v~~i~~sp-------~  334 (496)
                      |...+....++|++++.+.-|  +++.|..+|.+.|.|+|...  .+..  ..      .....|+++.|.-       .
T Consensus        78 P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa--vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA--VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE--EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             chhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe--EEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            555666678999999998776  89999999999999998776  3332  11      1345688888852       1


Q ss_pred             CCcEEEEEcCCCcEEEEeCC
Q 010997          335 DDNLILTGSADNSVRMFDRR  354 (496)
Q Consensus       335 ~~~~l~sgs~dg~i~iwd~~  354 (496)
                      ..-++++|+..|.+.+|.+.
T Consensus       154 SSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEE
T ss_pred             cceEEEEEeCCCCEEEEEEe
Confidence            23578999999999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.0022  Score=61.41  Aligned_cols=126  Identities=17%  Similarity=0.230  Sum_probs=83.0

Q ss_pred             cCCeeeeecCCCceeEEEEccCCC------ceEEEEcCCCeEEEEEccCCCccceeeeccC----CCCeEEEEecCCCCc
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSA------QEFCSVGDDSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDN  337 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~i~~sp~~~~  337 (496)
                      ++.+....-+.. |+-+.+.|+..      .--+.|-.|..|.-||+|-.....+...+.|    .....|++-.  ...
T Consensus       366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG  442 (644)
T KOG2395|consen  366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESG  442 (644)
T ss_pred             ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCc
Confidence            333344444444 55555655431      1134566788899999996553222222222    2345666655  467


Q ss_pred             EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       338 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ++|+||.+|.|||||.-.      ...-.-+.+-..+|..|..+.+|.+||+|+  +..+.+-++.-
T Consensus       443 ~IvvgS~~GdIRLYdri~------~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~~  501 (644)
T KOG2395|consen  443 YIVVGSLKGDIRLYDRIG------RRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTLI  501 (644)
T ss_pred             eEEEeecCCcEEeehhhh------hhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEec
Confidence            899999999999999743      344455678889999999999999988666  66777777654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.82  E-value=0.00071  Score=67.95  Aligned_cols=107  Identities=14%  Similarity=0.201  Sum_probs=77.9

Q ss_pred             EEecCCCCcEEEEEeC----CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997          146 IRELPQNTKIVATHTD----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  221 (496)
Q Consensus       146 l~~~p~~~~~lat~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~  221 (496)
                      ..|+| ...++|.++.    .|+|-||--...+           ....+..-|    +++++|+|..-.|+.|-.-|.+.
T Consensus        21 ~SWHP-sePlfAVA~fS~er~GSVtIfadtGEP-----------qr~Vt~P~h----atSLCWHpe~~vLa~gwe~g~~~   84 (1416)
T KOG3617|consen   21 SSWHP-SEPLFAVASFSPERGGSVTIFADTGEP-----------QRDVTYPVH----ATSLCWHPEEFVLAQGWEMGVSD   84 (1416)
T ss_pred             cccCC-CCceeEEEEecCCCCceEEEEecCCCC-----------Cccccccee----hhhhccChHHHHHhhccccceeE
Confidence            45788 4457776654    5788888533321           112233333    45799999988899999999999


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      +|...+...                                        -.....|..+|..+.|+++| ..++|+..-|
T Consensus        85 v~~~~~~e~----------------------------------------htv~~th~a~i~~l~wS~~G-~~l~t~d~~g  123 (1416)
T KOG3617|consen   85 VQKTNTTET----------------------------------------HTVVETHPAPIQGLDWSHDG-TVLMTLDNPG  123 (1416)
T ss_pred             EEecCCcee----------------------------------------eeeccCCCCCceeEEecCCC-CeEEEcCCCc
Confidence            998765322                                        13345689999999999999 7999999999


Q ss_pred             eEEEEEcc
Q 010997          302 CLILWDAR  309 (496)
Q Consensus       302 ~i~iwd~~  309 (496)
                      .|.+|...
T Consensus       124 ~v~lwr~d  131 (1416)
T KOG3617|consen  124 SVHLWRYD  131 (1416)
T ss_pred             eeEEEEee
Confidence            99999775

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.74  E-value=0.0018  Score=63.13  Aligned_cols=155  Identities=15%  Similarity=0.149  Sum_probs=90.1

Q ss_pred             cceeeeecCCCCceEEe---cCC-CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997          198 AEFALAMCPTEPYVLSG---GKD-KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  273 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg---~~D-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (496)
                      .+..-+|+|++..++-.   ... ..+.++|++++.....                                      ..
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--------------------------------------~~  235 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--------------------------------------LN  235 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--------------------------------------ec
Confidence            45667899998755433   222 4688888886543211                                      11


Q ss_pred             eecCCCceeEEEEccCCCceEEEEcCCCeEE--EEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE-cCCCc--E
Q 010997          274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI--LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNS--V  348 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~--iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~dg~--i  348 (496)
                      +.   +.-..-+|+|+|..++++...||...  ++|+.....+.   +....+.-..=.|+| +|..++-. +..|.  |
T Consensus       236 ~~---g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I  308 (425)
T COG0823         236 FN---GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQI  308 (425)
T ss_pred             cC---CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---cccCCccccCccCCC-CCCEEEEEeCCCCCcce
Confidence            22   23335589999988888888888755  55666655222   222222223567899 77766554 44555  4


Q ss_pred             EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc--EEEEECCC
Q 010997          349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEK  404 (496)
Q Consensus       349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~--i~iwd~~~  404 (496)
                      .++|+..       .....+......-..-.|+|+|.+|+.....+|.  |.+.|+..
T Consensus       309 ~~~~~~g-------~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         309 YLYDLEG-------SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             EEECCCC-------CceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence            4555553       3334443333333377899999987655544555  55666555

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.67  E-value=0.0031  Score=61.65  Aligned_cols=140  Identities=17%  Similarity=0.227  Sum_probs=79.0

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      ....+.++|+|++++.++ ||...|+......                                          .   ..
T Consensus        34 ~p~~ls~npngr~v~V~g-~geY~iyt~~~~r------------------------------------------~---k~   67 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVCG-DGEYEIYTALAWR------------------------------------------N---KA   67 (443)
T ss_dssp             --SEEEE-TTSSEEEEEE-TTEEEEEETTTTE------------------------------------------E---EE
T ss_pred             CCeeEEECCCCCEEEEEc-CCEEEEEEccCCc------------------------------------------c---cc
Confidence            458999999999888865 7888887732110                                          1   12


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEE-EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILW-DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                      .+....+.|.+.+  .+|+-...+.|.|+ ++....   ...+. ....+..|-.    |.+|+..+.+ .|.+||+.+ 
T Consensus        68 ~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~---~k~i~-~~~~~~~If~----G~LL~~~~~~-~i~~yDw~~-  135 (443)
T PF04053_consen   68 FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV---VKSIK-LPFSVEKIFG----GNLLGVKSSD-FICFYDWET-  135 (443)
T ss_dssp             EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T---T------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT-
T ss_pred             cCceeEEEEecCc--cEEEEECCCeEEEEEcCcccc---ceEEc-CCcccceEEc----CcEEEEECCC-CEEEEEhhH-
Confidence            3456678898844  58888778999996 332221   11111 1122333332    6666666544 899999999 


Q ss_pred             CCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       357 ~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                           +..++++...  +|..|.|++++.+ +|-.+ +..+.|++...
T Consensus       136 -----~~~i~~i~v~--~vk~V~Ws~~g~~-val~t-~~~i~il~~~~  174 (443)
T PF04053_consen  136 -----GKLIRRIDVS--AVKYVIWSDDGEL-VALVT-KDSIYILKYNL  174 (443)
T ss_dssp             -------EEEEESS---E-EEEEE-TTSSE-EEEE--S-SEEEEEE-H
T ss_pred             -----cceeeEEecC--CCcEEEEECCCCE-EEEEe-CCeEEEEEecc
Confidence                 7888888743  4899999999985 45555 44678877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.65  E-value=0.0071  Score=54.50  Aligned_cols=184  Identities=11%  Similarity=0.068  Sum_probs=103.7

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      ++..+++++.++.|+.||..++            +........ . .+.... ...+..++.++.++.|..+|..++...
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG------------~~~W~~~~~-~-~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~   99 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTG------------KVLWRFDLP-G-PISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVL   99 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTS------------EEEEEEECS-S-CGGSGE-EEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCC------------CEEEEeecc-c-ccccee-eecccccccccceeeeEecccCCccee
Confidence            3445666688999999999888            333333331 1 121211 224555666667889999998877654


Q ss_pred             ccC-CccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-CCceeEEEEccCCCceEEEEcCCCeEEEEEcc
Q 010997          232 SAT-DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR  309 (496)
Q Consensus       232 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~  309 (496)
                      ... ...                                    .... ........+.  + ..++.+..++.|..+|++
T Consensus       100 W~~~~~~------------------------------------~~~~~~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~  140 (238)
T PF13360_consen  100 WSIYLTS------------------------------------SPPAGVRSSSSPAVD--G-DRLYVGTSSGKLVALDPK  140 (238)
T ss_dssp             EEEEE-S------------------------------------SCTCSTB--SEEEEE--T-TEEEEEETCSEEEEEETT
T ss_pred             eeecccc------------------------------------ccccccccccCceEe--c-CEEEEEeccCcEEEEecC
Confidence            331 110                                    0000 0011122222  4 567777779999999999


Q ss_pred             CCCccceeeeccCCCC----------e-EEEEecCCCCcEEEEEcCCCc-EEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997          310 VGTSPVIKVEKAHDAD----------L-HCVDWNPLDDNLILTGSADNS-VRMFDRRNLTSNGVGSPINKFEGHSAAVLC  377 (496)
Q Consensus       310 ~~~~~~~~~~~~~~~~----------v-~~i~~sp~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~  377 (496)
                      +++  .+.........          + ..+.+.  ++ .+..++.++. +.+ |+.+      +..+....  ...+..
T Consensus       141 tG~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~t------g~~~w~~~--~~~~~~  206 (238)
T PF13360_consen  141 TGK--LLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLAT------GEKLWSKP--ISGIYS  206 (238)
T ss_dssp             TTE--EEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTT------TEEEEEEC--SS-ECE
T ss_pred             CCc--EEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCC------CCEEEEec--CCCccC
Confidence            987  33333222211          1 233333  34 6666777775 555 9998      55443322  222333


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      + ..+.+..++ .++.++.|..||+.++
T Consensus       207 ~-~~~~~~~l~-~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  207 L-PSVDGGTLY-VTSSDGRLYALDLKTG  232 (238)
T ss_dssp             C-EECCCTEEE-EEETTTEEEEEETTTT
T ss_pred             C-ceeeCCEEE-EEeCCCEEEEEECCCC
Confidence            2 345666555 5558999999999985

...

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.60  E-value=0.0078  Score=58.08  Aligned_cols=250  Identities=11%  Similarity=0.096  Sum_probs=124.8

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCcc-c-----cC-----------------------C--CCCCCCceE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRH-A-----VL-----------------------G--ATNSRPDLI  190 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~-~-----~~-----------------------~--~~~~~~~~~  190 (496)
                      .|+.+.|.+ ...-||.|...|.|.||......... .     ..                       .  .....|...
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            488999999 55578889999999999876553221 0     00                       0  001123334


Q ss_pred             EecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997          191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  270 (496)
Q Consensus       191 l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (496)
                      +....+ .|++++.+ +=.+++.|..+|++.|.|++............                                
T Consensus        82 ~~~~~g-~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~--------------------------------  127 (395)
T PF08596_consen   82 LDAKQG-PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE--------------------------------  127 (395)
T ss_dssp             E---S--SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------------------
T ss_pred             eeccCC-cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc--------------------------------
Confidence            444444 79999997 44489999999999999998654432211100                                


Q ss_pred             eeeeecCCCceeEEEEcc---CC----CceEEEEcCCCeEEEEEccC-CCcc----ceeeeccCCCCeEEEE-ecCC---
Q 010997          271 RGIYNGHEDTVEDVTFCP---SS----AQEFCSVGDDSCLILWDARV-GTSP----VIKVEKAHDADLHCVD-WNPL---  334 (496)
Q Consensus       271 ~~~~~~h~~~v~~l~~~~---~~----~~~l~s~~~dg~i~iwd~~~-~~~~----~~~~~~~~~~~v~~i~-~sp~---  334 (496)
                      ...-......|+++.|.-   .+    .-.+++|...|.+.+|.+.- ....    .......+.+.|..|. ++..   
T Consensus       128 ~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~  207 (395)
T PF08596_consen  128 SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGE  207 (395)
T ss_dssp             --T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--
T ss_pred             cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCC
Confidence            000112334577777752   11    13688889999999998752 1110    1111123555555554 3210   


Q ss_pred             -----------------CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC----CCCCEEEEEeC
Q 010997          335 -----------------DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----DKSSVFGSSAE  393 (496)
Q Consensus       335 -----------------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp----~~~~llas~~~  393 (496)
                                       -..++++ ..+..++++..-+      .+..++..........+.+-+    .+...|++-..
T Consensus       208 ~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~~~------~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~  280 (395)
T PF08596_consen  208 SALATISAMQGLSKGISIPGYVVV-VSESDIRVFKPPK------SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN  280 (395)
T ss_dssp             B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-TT---------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET
T ss_pred             cccCchhHhhccccCCCcCcEEEE-EcccceEEEeCCC------CcccceeeccccccceEEEEeecccCCceEEEEEEC
Confidence                             1124444 4467799998887      444444442222333445532    23346778888


Q ss_pred             CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC----CCCCcceEEecCCCCcEEEE
Q 010997          394 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       394 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~~~~~p~~~~l~~s  448 (496)
                      +|.|++|.+....+               +....-    ....+....++++|..++.+
T Consensus       281 ~G~i~i~SLP~Lke---------------i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~  324 (395)
T PF08596_consen  281 NGSIRIYSLPSLKE---------------IKSVSLPPPLDSRRLSSSSISRNGDIFYWT  324 (395)
T ss_dssp             TSEEEEEETTT--E---------------EEEEE-SS---HHHHTT-EE-TTS-EEEE-
T ss_pred             CCcEEEEECCCchH---------------hhcccCCCccccccccccEECCCCCEEEEe
Confidence            99999999988522               221111    22345667788888755443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.60  E-value=0.0083  Score=58.70  Aligned_cols=98  Identities=13%  Similarity=0.123  Sum_probs=58.4

Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      ..++.++.+|.+..+|..+++  ...... . .....+..   .+..+..++.+|.+..+|..+      +..+-....-
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~--~~W~~~-~-~~~~~~~~---~~~~vy~~~~~g~l~ald~~t------G~~~W~~~~~  323 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQ--IVWKRE-Y-GSVNDFAV---DGGRIYLVDQNDRVYALDTRG------GVELWSQSDL  323 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCC--EEEeec-C-CCccCcEE---ECCEEEEEcCCCeEEEEECCC------CcEEEccccc
Confidence            356667788999999999887  222211 1 11112222   356677778899999999987      5444332211


Q ss_pred             C-CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          372 S-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       372 ~-~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      . ....+....  +..+ ..++.||.|.+.|..++
T Consensus       324 ~~~~~~sp~v~--~g~l-~v~~~~G~l~~ld~~tG  355 (394)
T PRK11138        324 LHRLLTAPVLY--NGYL-VVGDSEGYLHWINREDG  355 (394)
T ss_pred             CCCcccCCEEE--CCEE-EEEeCCCEEEEEECCCC
Confidence            1 111222221  3334 47788999999998874

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.58  E-value=0.0068  Score=59.10  Aligned_cols=196  Identities=15%  Similarity=0.152  Sum_probs=108.5

Q ss_pred             CceeEEEecCCCCcEEEEE---eCC-CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-Eec
Q 010997          141 GEVNRIRELPQNTKIVATH---TDS-PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGG  215 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~---~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg~  215 (496)
                      ..+..-+|+| ++..++-.   ... ..++++|+.++..          ..+..+.++..    .-+|+|||++|+ +..
T Consensus       193 ~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~----------~~i~~~~g~~~----~P~fspDG~~l~f~~~  257 (425)
T COG0823         193 SLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKR----------PVILNFNGNNG----APAFSPDGSKLAFSSS  257 (425)
T ss_pred             cceeccccCc-CCCceEEEEEecCCCceEEEEeccCCcc----------ceeeccCCccC----CccCCCCCCEEEEEEC
Confidence            3455567788 44433322   222 4699999988832          22334455543    568999998655 666


Q ss_pred             CCCcEEEEe--cCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          216 KDKSVVLWS--IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       216 ~Dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      .||...||-  +.....                                         ..+..-.+.-..=.|+|+|..+
T Consensus       258 rdg~~~iy~~dl~~~~~-----------------------------------------~~Lt~~~gi~~~Ps~spdG~~i  296 (425)
T COG0823         258 RDGSPDIYLMDLDGKNL-----------------------------------------PRLTNGFGINTSPSWSPDGSKI  296 (425)
T ss_pred             CCCCccEEEEcCCCCcc-----------------------------------------eecccCCccccCccCCCCCCEE
Confidence            788766664  443221                                         1122212222245799999777


Q ss_pred             EEEEcCCCeEEEE--EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CCc--EEEEeCCCCCCCCCCCCceEe
Q 010997          294 FCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNS--VRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       294 l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~--i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      +++.+..|.-.||  |.....  .. ........-..-.|+| ++.+|+..+. +|.  |.+.|+.+      +..++.+
T Consensus       297 vf~Sdr~G~p~I~~~~~~g~~--~~-riT~~~~~~~~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~------~~~~~~l  366 (425)
T COG0823         297 VFTSDRGGRPQIYLYDLEGSQ--VT-RLTFSGGGNSNPVWSP-DGDKIVFESSSGGQWDIDKNDLAS------GGKIRIL  366 (425)
T ss_pred             EEEeCCCCCcceEEECCCCCc--ee-EeeccCCCCcCccCCC-CCCEEEEEeccCCceeeEEeccCC------CCcEEEc
Confidence            7777777765555  444443  21 1212222222778999 8888877664 344  56666655      2223333


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  403 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~  403 (496)
                      . +......-.|.|++..++-+++.-+.=.++.+.
T Consensus       367 t-~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s  400 (425)
T COG0823         367 T-STYLNESPSWAPNGRMIMFSSGQGGGSVLSLVS  400 (425)
T ss_pred             c-ccccCCCCCcCCCCceEEEeccCCCCceEEEee
Confidence            2 344455667888888665444433233333333

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.48  E-value=0.0063  Score=60.80  Aligned_cols=111  Identities=11%  Similarity=0.120  Sum_probs=64.8

Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  424 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  424 (496)
                      ++.|.++|.++..... ...+..+. -......+.++|||+++++++..+..|.|.|+.+.........    .+...+.
T Consensus       295 gn~V~VID~~t~~~~~-~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~----~~~~~vv  368 (635)
T PRK02888        295 GSKVPVVDGRKAANAG-SALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI----KPRDAVV  368 (635)
T ss_pred             CCEEEEEECCccccCC-cceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC----CccceEE
Confidence            3457777766510000 12233332 3455678999999999998998899999999988543221110    1111111


Q ss_pred             EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      ....-...-...+|.++|. .+.|.--       |..|-.|++..
T Consensus       369 aevevGlGPLHTaFDg~G~-aytslf~-------dsqv~kwn~~~  405 (635)
T PRK02888        369 AEPELGLGPLHTAFDGRGN-AYTTLFL-------DSQIVKWNIEA  405 (635)
T ss_pred             EeeccCCCcceEEECCCCC-EEEeEee-------cceeEEEehHH
Confidence            1111122345678888764 5554444       58999999984

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.48  E-value=0.00079  Score=66.40  Aligned_cols=118  Identities=15%  Similarity=0.249  Sum_probs=85.4

Q ss_pred             CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       325 ~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      .|.--+++. .+.+++.|+.-|.+.+|+.....     .......+..+.+..+..|++.. ++|.|+..|.|.++-+..
T Consensus        35 ~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~-----~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   35 RVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGE-----MRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             eEEEEEeec-CCceEEEecccceEEEEecCchh-----hhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhc
Confidence            333334444 78999999999999999977511     12233334556677777888776 678999999999999887


Q ss_pred             CCcccCCCCCCCCCCCeeEEEe---cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          405 VGKKVEQGPRTTNYPAGLFFQH---AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .            .|+..+...   ..|...|++++|++++..++        +|...|.|..-.+..
T Consensus       108 ~------------~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~y--------sGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  108 E------------LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLY--------SGDSQGKVVLTELDS  155 (726)
T ss_pred             c------------CCCcceeeccccccCCceEEEEEecccccEEe--------ecCCCceEEEEEech
Confidence            4            333333332   23667999999999999888        777789999988873

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.46  E-value=0.027  Score=49.19  Aligned_cols=67  Identities=7%  Similarity=-0.083  Sum_probs=46.7

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  232 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~  232 (496)
                      +++++.|+..|.+++-+..++.            ....+..-.. .-......+++..+..|+.|+.....|..+..+..
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs------------~~w~f~~~~~-vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGS------------QIWNFVILET-VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchh------------heeeeeehhh-hccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence            4579999999999999999883            2222222221 11123345678899999999999999998765543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.45  E-value=0.0077  Score=45.70  Aligned_cols=102  Identities=11%  Similarity=0.134  Sum_probs=68.6

Q ss_pred             eeEEEEc---cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997          281 VEDVTFC---PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  357 (496)
Q Consensus       281 v~~l~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~  357 (496)
                      |++|++.   .+|.+.|+.|++|..|++|+-..    .+... .-.+.|++++-..  ...|+.|-.+|+|-+|+-..  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei-~e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~--   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEI-TETDKVTSLCSLG--GGRFAYALANGTVGVYDRSQ--   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEE-ecccceEEEEEcC--CCEEEEEecCCEEEEEeCcc--
Confidence            5566654   45567899999999999997432    33333 3456788887775  57899999999999998653  


Q ss_pred             CCCCCCCceEeccCCCCEEEEEEcC---CCCCEEEEEeCCCcEE
Q 010997          358 SNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLN  398 (496)
Q Consensus       358 ~~~~~~~~~~~~~h~~~i~~l~~sp---~~~~llas~~~dg~i~  398 (496)
                            .+...+. +..++++++..   +|..-|++|-.+|.|-
T Consensus        73 ------RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 ------RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ------eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                  3344443 23356665543   3333356888888774

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.43  E-value=0.0038  Score=64.62  Aligned_cols=139  Identities=17%  Similarity=0.232  Sum_probs=94.3

Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCC-eEEEEecC----CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc----e
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDAD-LHCVDWNP----LDDNLILTGSADNSVRMFDRRNLTSNGVGSPI----N  366 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~i~~sp----~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~----~  366 (496)
                      .......|+-.|+..++  ++.....+... |..++-..    -.......|-.+..+..||.|-..    .+.+    +
T Consensus       499 ~~~~~~~ly~mDLe~GK--VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~----~k~v~~~~k  572 (794)
T PF08553_consen  499 DPNNPNKLYKMDLERGK--VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG----NKLVDSQSK  572 (794)
T ss_pred             cCCCCCceEEEecCCCc--EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC----Cceeecccc
Confidence            33456788889999888  66666665543 55554321    123445667778899999999632    1122    1


Q ss_pred             EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997          367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~  446 (496)
                      .+ ......+|++-+.+|.  ||.|+.+|.||+||--.  .             .-...+.|-..+|..|..+.+|.|+|
T Consensus       573 ~Y-~~~~~Fs~~aTt~~G~--iavgs~~G~IRLyd~~g--~-------------~AKT~lp~lG~pI~~iDvt~DGkwil  634 (794)
T PF08553_consen  573 QY-SSKNNFSCFATTEDGY--IAVGSNKGDIRLYDRLG--K-------------RAKTALPGLGDPIIGIDVTADGKWIL  634 (794)
T ss_pred             cc-ccCCCceEEEecCCce--EEEEeCCCcEEeecccc--h-------------hhhhcCCCCCCCeeEEEecCCCcEEE
Confidence            12 2345678888888885  57999999999999322  1             11122456678999999999999999


Q ss_pred             EEecCCCCCCCCCCeEEEeec
Q 010997          447 VSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      |+|.         ..|.|++.
T Consensus       635 aTc~---------tyLlLi~t  646 (794)
T PF08553_consen  635 ATCK---------TYLLLIDT  646 (794)
T ss_pred             Eeec---------ceEEEEEE
Confidence            9986         56777765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.40  E-value=0.08  Score=50.90  Aligned_cols=276  Identities=15%  Similarity=0.176  Sum_probs=135.3

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccc-cCCCCCCCCceEEecCCC--------CcceeeeecCCCCc
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHA-VLGATNSRPDLILTGHQD--------NAEFALAMCPTEPY  210 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~l~~h~~--------~~v~~l~~~p~~~~  210 (496)
                      ...+....|+| +++.+|-.. ++.|.+++..++....- ..+     ....+.|-.+        ..-.++-|+||+++
T Consensus        42 ~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-----~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~  114 (353)
T PF00930_consen   42 PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDG-----EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY  114 (353)
T ss_dssp             ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES-------TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE
T ss_pred             ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEecccc-----ceeEEcCccceeccccccccccceEECCCCCE
Confidence            56788999999 788887765 46899998876622111 111     0011111110        11357889999998


Q ss_pred             eEEecC-CCcEEEEecCCccccccCCccc--c--ccCCCCCceeccCCCCCCCCCCCCCCCCcCC--ee---eeecCCCc
Q 010997          211 VLSGGK-DKSVVLWSIQDHITSSATDPAT--A--KSAGSSGSIIKQSPKPGDGNDKAADGPSVGP--RG---IYNGHEDT  280 (496)
Q Consensus       211 l~sg~~-Dg~i~iwd~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~h~~~  280 (496)
                      |+.... +..|..+.+-.........+..  .  +..+...         ....+.+++....+.  +.   .+..-..-
T Consensus       115 la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n---------p~v~l~v~~~~~~~~~~~~~~~~~~~~~~y  185 (353)
T PF00930_consen  115 LAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN---------PRVSLFVVDLASGKTTELDPPNSLNPQDYY  185 (353)
T ss_dssp             EEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS------------EEEEEEEESSSTCCCEE---HHHHTSSEE
T ss_pred             EEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC---------CceEEEEEECCCCcEEEeeeccccCCCccC
Confidence            887654 4555555443211110000000  0  0000000         000111111112111  11   11233556


Q ss_pred             eeEEEEccCCCceEEE-EcCC---CeEEEEEccCCCccceeeeccCCCCe---EEEEec-CCCCcEEEEEcCCCcEEEEe
Q 010997          281 VEDVTFCPSSAQEFCS-VGDD---SCLILWDARVGTSPVIKVEKAHDADL---HCVDWN-PLDDNLILTGSADNSVRMFD  352 (496)
Q Consensus       281 v~~l~~~~~~~~~l~s-~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v---~~i~~s-p~~~~~l~sgs~dg~i~iwd  352 (496)
                      +..+.|.+++..+++. ...+   ..+.++|..++....+.. ......|   ..+.|. +.+..+|.....+|.-+|+-
T Consensus       186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~  264 (353)
T PF00930_consen  186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL  264 (353)
T ss_dssp             EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred             cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence            8899999998423333 2332   246777887766332222 1222222   345554 53566666666888666554


Q ss_pred             CCCCCCCCCCCCceEeccCCCCEEE-EEEcCCCCCEEEEEeCCC--cEEEEECCCC-CcccCCCCCCCCCCCeeEEEecC
Q 010997          353 RRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDG--LLNIWDYEKV-GKKVEQGPRTTNYPAGLFFQHAG  428 (496)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~h~~~i~~-l~~sp~~~~llas~~~dg--~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~  428 (496)
                      +...     +.....+....-.|.. +.|++++..|+.++..++  .-.||-+... +              ..+..+..
T Consensus       265 ~~~~-----~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~--------------~~~~~LT~  325 (353)
T PF00930_consen  265 YDLD-----GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG--------------GEPKCLTC  325 (353)
T ss_dssp             EETT-----SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET--------------TEEEESST
T ss_pred             Eccc-----ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC--------------CCeEeccC
Confidence            4432     2335566656667755 778898887777777633  4444444332 1              11222332


Q ss_pred             CCCCcceEEecCCCCcEEEEecC
Q 010997          429 HRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       429 h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      ....-..+.|+|++.+++.+++.
T Consensus       326 ~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  326 EDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             TSSTTEEEEE-TTSSEEEEEEES
T ss_pred             CCCCceEEEECCCCCEEEEEEcC
Confidence            22222589999999999988764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.39  E-value=0.0069  Score=60.03  Aligned_cols=156  Identities=10%  Similarity=0.143  Sum_probs=100.2

Q ss_pred             EecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecC
Q 010997          147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ  226 (496)
Q Consensus       147 ~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~  226 (496)
                      ++.. ..++++.|+..|.+++|+-..+....           ....+-. ..+..+..+++..++|.|+..|.|.++-++
T Consensus        40 c~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~-----------~~~~~~~-~~~~~~~vs~~e~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   40 CVDA-TEEYLAMGSSAGSVYLYNRHTGEMRK-----------LKNEGAT-GITCVRSVSSVEYLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             Eeec-CCceEEEecccceEEEEecCchhhhc-----------ccccCcc-ceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence            3344 77899999999999999988773221           1222222 256677888888899999999999999887


Q ss_pred             CccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee-eecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997          227 DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL  305 (496)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  305 (496)
                      ......                                   ...+.. -..|...|++++|++++ ..+++|...|.|.+
T Consensus       107 ~~~p~~-----------------------------------~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~  150 (726)
T KOG3621|consen  107 KELPRD-----------------------------------LDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVL  150 (726)
T ss_pred             ccCCCc-----------------------------------ceeeccccccCCceEEEEEecccc-cEEeecCCCceEEE
Confidence            522100                                   000011 12378899999999999 78999999999999


Q ss_pred             EEccCCCc--cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997          306 WDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       306 wd~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~  355 (496)
                      -.+.....  -....+..-.+.|..+...   ..+|++++.-.. .++++..
T Consensus       151 ~~L~s~~~~~~~~q~il~~ds~IVQlD~~---q~~LLVStl~r~-~Lc~tE~  198 (726)
T KOG3621|consen  151 TELDSRQAFLSKSQEILSEDSEIVQLDYL---QSYLLVSTLTRC-ILCQTEA  198 (726)
T ss_pred             EEechhhhhccccceeeccCcceEEeecc---cceehHhhhhhh-heeecch
Confidence            88776210  0111222345677777765   344444444333 3445443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0014  Score=63.92  Aligned_cols=76  Identities=21%  Similarity=0.395  Sum_probs=66.5

Q ss_pred             CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE-EEEEcCCCCCEEEEEeCCCcEEEE
Q 010997          322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAEDGLLNIW  400 (496)
Q Consensus       322 ~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~-~l~~sp~~~~llas~~~dg~i~iw  400 (496)
                      -...|..+.|+| .-.++|++..+|.|.+..+.       ...+.++..|...++ +++|.|||. ++|.|-.||+|++.
T Consensus        19 l~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-------~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~   89 (665)
T KOG4640|consen   19 LPINIKRIEWNP-KMDLIATRTEKGELLIHRLN-------WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLH   89 (665)
T ss_pred             cccceEEEEEcC-ccchhheeccCCcEEEEEec-------cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEE
Confidence            345678899999 89999999999999999887       377888887777777 999999998 78999999999999


Q ss_pred             ECCCCC
Q 010997          401 DYEKVG  406 (496)
Q Consensus       401 d~~~~~  406 (496)
                      |+.+++
T Consensus        90 Dve~~~   95 (665)
T KOG4640|consen   90 DVEKGG   95 (665)
T ss_pred             EccCCC
Confidence            999863

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.29  E-value=0.00066  Score=57.93  Aligned_cols=106  Identities=12%  Similarity=0.141  Sum_probs=69.3

Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      ..++.|+.+|.|.+|....... ...........|-++--.-.++.+..++..||.|+.|++.-      .+.+.....|
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~-~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p------~k~~g~~g~h  143 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGA-HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP------NKVLGYVGQH  143 (238)
T ss_pred             ceEEeecccceEEEecCCccch-HHHhhhcccccceeccccccccceeEEeccCCceeeecccc------Cceeeeeccc
Confidence            5699999999999998763321 11111122233333333332566899999999999999886      5556666666


Q ss_pred             C-CCEEEEEEcCCCCCEEEEE--eCCCcEEEEECCCC
Q 010997          372 S-AAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKV  405 (496)
Q Consensus       372 ~-~~i~~l~~sp~~~~llas~--~~dg~i~iwd~~~~  405 (496)
                      . .++..+..+..++ +++.+  |.|..++.|++...
T Consensus       144 ~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  144 NFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cCCCcceeEEecCCc-eEEeeccccchhhhhcchhhh
Confidence            6 5555665665565 35566  77888888888764

>smart00320 WD40 WD40 repeats

Probab=97.28  E-value=0.0006  Score=40.72  Aligned_cols=38  Identities=32%  Similarity=0.754  Sum_probs=32.9

Q ss_pred             CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997          363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  401 (496)
Q Consensus       363 ~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd  401 (496)
                      .++..+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            45677788999999999999886 567999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.26  E-value=0.062  Score=52.78  Aligned_cols=226  Identities=11%  Similarity=0.147  Sum_probs=108.3

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      ..-....+.++| ++++++. +.||.-.|+......              ....|    ......|.+.++ +|+-...+
T Consensus        31 ~~~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r--------------~k~~G----~g~~~vw~~~n~-yAv~~~~~   89 (443)
T PF04053_consen   31 CEIYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWR--------------NKAFG----SGLSFVWSSRNR-YAVLESSS   89 (443)
T ss_dssp             -SS--SEEEE-T-TSSEEEE-EETTEEEEEETTTTE--------------EEEEE----E-SEEEE-TSSE-EEEE-TTS
T ss_pred             CCcCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCc--------------ccccC----ceeEEEEecCcc-EEEEECCC
Confidence            444588999999 8888877 556788888843331              11122    235778988554 66666688


Q ss_pred             cEEEE-ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          219 SVVLW-SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       219 ~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      +|.|+ +++....                                         ..+.. ...+..|-.   | .+|+..
T Consensus        90 ~I~I~kn~~~~~~-----------------------------------------k~i~~-~~~~~~If~---G-~LL~~~  123 (443)
T PF04053_consen   90 TIKIYKNFKNEVV-----------------------------------------KSIKL-PFSVEKIFG---G-NLLGVK  123 (443)
T ss_dssp             -EEEEETTEE-TT-----------------------------------------------SS-EEEEE----S-SSEEEE
T ss_pred             eEEEEEcCccccc-----------------------------------------eEEcC-CcccceEEc---C-cEEEEE
Confidence            99996 4432110                                         01111 112333322   5 556655


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC-----CCCCCCCCceEeccCC
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL-----TSNGVGSPINKFEGHS  372 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~-----~~~~~~~~~~~~~~h~  372 (496)
                      +. +.|.+||..+++  .+....  -.+|..+.|++ ++.++|..+.+ .+.|++....     ...+....+..+..-.
T Consensus       124 ~~-~~i~~yDw~~~~--~i~~i~--v~~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~  196 (443)
T PF04053_consen  124 SS-DFICFYDWETGK--LIRRID--VSAVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS  196 (443)
T ss_dssp             ET-TEEEEE-TTT----EEEEES--S-E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-
T ss_pred             CC-CCEEEEEhhHcc--eeeEEe--cCCCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec
Confidence            54 489999999887  555543  23489999999 89999998765 5777775541     0000001334443335


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      ..|.+.+|..+  .++.|.. . .++.  +-.+ +            ...+..+   ..++.=+...+....++ .    
T Consensus       197 ~~IkSg~W~~d--~fiYtT~-~-~lkY--l~~G-e------------~~~i~~l---d~~~yllgy~~~~~~ly-~----  249 (443)
T PF04053_consen  197 ERIKSGCWVED--CFIYTTS-N-HLKY--LVNG-E------------TGIIAHL---DKPLYLLGYLPKENRLY-L----  249 (443)
T ss_dssp             S--SEEEEETT--EEEEE-T-T-EEEE--EETT-E------------EEEEEE----SS--EEEEEETTTTEEE-E----
T ss_pred             ceeEEEEEEcC--EEEEEcC-C-eEEE--EEcC-C------------cceEEEc---CCceEEEEEEccCCEEE-E----
Confidence            67889999876  2333333 3 6665  3221 1            1222222   23455566666444444 2    


Q ss_pred             CCCCCCCCeEEEeecC
Q 010997          453 CDSTGGGGTLQIWRMS  468 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~  468 (496)
                         ...|+.|..+.+.
T Consensus       250 ---~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  250 ---IDRDGNVISYELD  262 (443)
T ss_dssp             ---E-TT--EEEEE--
T ss_pred             ---EECCCCEEEEEEC
Confidence               2234778877776

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0017  Score=63.37  Aligned_cols=94  Identities=14%  Similarity=0.292  Sum_probs=75.1

Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeE-EEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~i~~sp~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                      ...+.-+.|+|.- .++|++..+|.|.++.+.-.   .+.++.-+...++ +++|.| +|.+||.|-.||+|++.|..+ 
T Consensus        20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~q---Rlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~-   93 (665)
T KOG4640|consen   20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLNWQ---RLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK-   93 (665)
T ss_pred             ccceEEEEEcCcc-chhheeccCCcEEEEEeccc---eeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccC-
Confidence            3467889999988 79999999999999988733   3556655677777 999999 899999999999999999998 


Q ss_pred             CCCCCCCCceEe-ccCCCCEEEEEEcC
Q 010997          357 TSNGVGSPINKF-EGHSAAVLCVQWSP  382 (496)
Q Consensus       357 ~~~~~~~~~~~~-~~h~~~i~~l~~sp  382 (496)
                           +..+..+ ..-...|.++-|+|
T Consensus        94 -----~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   94 -----GGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             -----CCceeccccccccchheeeccc
Confidence                 5555552 22456788888864

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.22  E-value=0.019  Score=57.55  Aligned_cols=110  Identities=16%  Similarity=0.193  Sum_probs=71.9

Q ss_pred             ccCCCceEEEEcCCCeEEEEEccC----CCccceeeeccCCCCeEEEEecCCCCcEEEE-EcCCCcEEEEeCCCCCCCCC
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARV----GTSPVIKVEKAHDADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGV  361 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~dg~i~iwd~~~~~~~~~  361 (496)
                      .++|. +...  .++.|.+.|.++    +. ..... -.-......++++| ++.++++ +..+.+|.++|+.+......
T Consensus       285 vkdGK-~~~V--~gn~V~VID~~t~~~~~~-~v~~y-IPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~  358 (635)
T PRK02888        285 VKAGK-FKTI--GGSKVPVVDGRKAANAGS-ALTRY-VPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFD  358 (635)
T ss_pred             hhCCC-EEEE--CCCEEEEEECCccccCCc-ceEEE-EECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence            45663 3333  367899999987    22 12322 24556778899999 7776655 55689999999998431000


Q ss_pred             ------CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          362 ------GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       362 ------~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                            ...+.+..- .......+|.++|. .+.|-..|..|..||+..
T Consensus       359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccCCccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence                  011222222 23345788999986 677888899999999986

>smart00320 WD40 WD40 repeats

Probab=97.21  E-value=0.00085  Score=40.00  Aligned_cols=36  Identities=33%  Similarity=0.648  Sum_probs=32.0

Q ss_pred             eeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEE
Q 010997          271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD  307 (496)
Q Consensus       271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd  307 (496)
                      ...+..|...|.++.|++.+ .++++++.|+.+++||
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            46677889999999999988 7899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.24  Score=48.06  Aligned_cols=199  Identities=16%  Similarity=0.162  Sum_probs=122.2

Q ss_pred             eeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997          200 FALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  278 (496)
Q Consensus       200 ~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  278 (496)
                      .+++.++.++ .+++...++.|.+.|........                                       ....+  
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~---------------------------------------~~~vG--  115 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG---------------------------------------SIPVG--  115 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceee---------------------------------------Eeeec--
Confidence            5678888877 45555557899999955432210                                       00111  


Q ss_pred             CceeEEEEccCCCceEEEEc--CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCC
Q 010997          279 DTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRN  355 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~  355 (496)
                      .....++++|++..+.++-.  .++++.+.|..+..  ..........+ ..++++| ++..+ ++-..++.|.++|...
T Consensus       116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--~~~~~~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--VTATIPVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--EEEEEecCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCC
Confidence            14568899999966666655  47889999887776  33333333334 8999999 77744 4455789999999776


Q ss_pred             CCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC--CcEEEEECCCCCcccCCCCCCCCCCCeeEEE--ecCCCC
Q 010997          356 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ--HAGHRD  431 (496)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~  431 (496)
                      ..... ........ -......+.++|++.+++++...+  +.+.+.|....               .....  ..+-. 
T Consensus       192 ~~v~~-~~~~~~~~-~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~---------------~v~~~~~~~~~~-  253 (381)
T COG3391         192 NSVVR-GSVGSLVG-VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG---------------NVTATDLPVGSG-  253 (381)
T ss_pred             cceec-cccccccc-cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc---------------eEEEeccccccC-
Confidence            22100 00000122 223346889999999777666554  58888887763               11111  11111 


Q ss_pred             CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ....+..+|++.++.+.-+.       .+.+.+-|..
T Consensus       254 ~~~~v~~~p~g~~~yv~~~~-------~~~V~vid~~  283 (381)
T COG3391         254 APRGVAVDPAGKAAYVANSQ-------GGTVSVIDGA  283 (381)
T ss_pred             CCCceeECCCCCEEEEEecC-------CCeEEEEeCC
Confidence            35668889988887765443       2778887776

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.17  E-value=0.19  Score=46.33  Aligned_cols=246  Identities=12%  Similarity=0.120  Sum_probs=126.8

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      .++.|+.|+.+| ++++++....           .+......  . .|..+...|+-+.|+.-+ |+.+.++++..-...
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~-----------~~~~i~~~--~-~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~   69 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPS-----------KPTRILKL--S-SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPV   69 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCc-----------cceeEeec--c-eEEEEEEecccCEEEEEc-CCccEEEEchhhccc
Confidence            566888899998 9999993221           11122211  1 378888888877666554 699999999754322


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE--EccCCCceEEEEcCCCeEEEEEcc
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT--FCPSSAQEFCSVGDDSCLILWDAR  309 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~~l~s~~~dg~i~iwd~~  309 (496)
                      ....+...                          ...............+...+  -...+ ...+.+.....|.+|...
T Consensus        70 ~~~~~~~~--------------------------~~~~~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~  122 (275)
T PF00780_consen   70 STSAPLAF--------------------------PKSRSLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWN  122 (275)
T ss_pred             cccccccc--------------------------cccccccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEE
Confidence            11100000                          00000000011122333333  11233 334444455699999887


Q ss_pred             CCCc---cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc----------CCCCEE
Q 010997          310 VGTS---PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG----------HSAAVL  376 (496)
Q Consensus       310 ~~~~---~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~----------h~~~i~  376 (496)
                      ....   .....+ .-...+.+++|.   ++.++.|..++ ..+.|+.+..    ...+.....          ...++.
T Consensus       123 ~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i~v~~~~~-f~~idl~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~  193 (275)
T PF00780_consen  123 DPRNSFSKLLKEI-SLPDPPSSIAFL---GNKICVGTSKG-FYLIDLNTGS----PSELLDPSDSSSSFKSRNSSSKPLG  193 (275)
T ss_pred             CCcccccceeEEE-EcCCCcEEEEEe---CCEEEEEeCCc-eEEEecCCCC----ceEEeCccCCcchhhhcccCCCceE
Confidence            6421   122222 445888999997   46777776554 7888988622    111111111          122344


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe-eEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997          377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG-LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  455 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s  455 (496)
                      .+... ++.+ |++.  |..-.+.|....             +.. .....   .....++++.  .+++++...     
T Consensus       194 ~~~~~-~~e~-Ll~~--~~~g~fv~~~G~-------------~~r~~~i~W---~~~p~~~~~~--~pyli~~~~-----  246 (275)
T PF00780_consen  194 IFQLS-DNEF-LLCY--DNIGVFVNKNGE-------------PSRKSTIQW---SSAPQSVAYS--SPYLIAFSS-----  246 (275)
T ss_pred             EEEeC-CceE-EEEe--cceEEEEcCCCC-------------cCcccEEEc---CCchhEEEEE--CCEEEEECC-----
Confidence            44443 3453 3332  444444554431             111 11111   2245666664  467775433     


Q ss_pred             CCCCCeEEEeecCCCCcCCchHHHHHHHhcc
Q 010997          456 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  486 (496)
Q Consensus       456 gg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~  486 (496)
                          +.|.||++.      ++++++++....
T Consensus       247 ----~~iEV~~~~------~~~lvQ~i~~~~  267 (275)
T PF00780_consen  247 ----NSIEVRSLE------TGELVQTIPLPN  267 (275)
T ss_pred             ----CEEEEEECc------CCcEEEEEECCC
Confidence                679999999      566666665443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.09  E-value=0.35  Score=47.72  Aligned_cols=247  Identities=13%  Similarity=0.068  Sum_probs=125.1

Q ss_pred             eeEEEecCCCCcEEEEE-eCCC----cEEEEeCCCCCCccccCCCCCCCCce-EEecCCCCcceeeeecCCCCceEEecC
Q 010997          143 VNRIRELPQNTKIVATH-TDSP----DVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~-~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      +...+++| ++++||-+ +..|    .|+|+|+.++.            .+. .+...   ....+.|.++++.|+-...
T Consensus       126 ~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~------------~l~d~i~~~---~~~~~~W~~d~~~~~y~~~  189 (414)
T PF02897_consen  126 LGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGK------------FLPDGIENP---KFSSVSWSDDGKGFFYTRF  189 (414)
T ss_dssp             EEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTE------------EEEEEEEEE---ESEEEEECTTSSEEEEEEC
T ss_pred             eeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCc------------CcCCccccc---ccceEEEeCCCCEEEEEEe
Confidence            44667889 66766644 4445    59999999882            111 12221   1123999999886554432


Q ss_pred             C-----------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCc--eeE
Q 010997          217 D-----------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT--VED  283 (496)
Q Consensus       217 D-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~  283 (496)
                      +           ..|..|.+.+....                                      -...+......  ...
T Consensus       190 ~~~~~~~~~~~~~~v~~~~~gt~~~~--------------------------------------d~lvfe~~~~~~~~~~  231 (414)
T PF02897_consen  190 DEDQRTSDSGYPRQVYRHKLGTPQSE--------------------------------------DELVFEEPDEPFWFVS  231 (414)
T ss_dssp             STTTSS-CCGCCEEEEEEETTS-GGG---------------------------------------EEEEC-TTCTTSEEE
T ss_pred             CcccccccCCCCcEEEEEECCCChHh--------------------------------------CeeEEeecCCCcEEEE
Confidence            2           23777777654221                                      01233333322  567


Q ss_pred             EEEccCCCceEEEEcCC---CeEEEEEccCC--CccceeeeccCCCCeE-EEEecCCCCcEEEEEc---CCCcEEEEeCC
Q 010997          284 VTFCPSSAQEFCSVGDD---SCLILWDARVG--TSPVIKVEKAHDADLH-CVDWNPLDDNLILTGS---ADNSVRMFDRR  354 (496)
Q Consensus       284 l~~~~~~~~~l~s~~~d---g~i~iwd~~~~--~~~~~~~~~~~~~~v~-~i~~sp~~~~~l~sgs---~dg~i~iwd~~  354 (496)
                      +..++++..+++.....   ..+.+.|+...  .......+......+. .+...  ++.+++...   .++.|.-.++.
T Consensus       232 ~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~  309 (414)
T PF02897_consen  232 VSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLA  309 (414)
T ss_dssp             EEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETT
T ss_pred             EEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEeccc
Confidence            88899985555544433   34778888764  1112233333333443 34433  344443332   24677777877


Q ss_pred             CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEECC-CCCcccCCCCCCCCCCCeeEEEe-cCCC
Q 010997          355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYE-KVGKKVEQGPRTTNYPAGLFFQH-AGHR  430 (496)
Q Consensus       355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~h~  430 (496)
                      ....   ......+-.+...+.-..+...+.+|++....++  .|+++++. ..                ..... ..-.
T Consensus       310 ~~~~---~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~----------------~~~~~~~p~~  370 (414)
T PF02897_consen  310 DPSP---AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK----------------ESREIPLPEA  370 (414)
T ss_dssp             STSG---GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE----------------EEEEEESSSS
T ss_pred             cccc---ccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc----------------EEeeecCCcc
Confidence            7321   0112245556664443444445666777776665  57888887 31                11111 1112


Q ss_pred             CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          431 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       431 ~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +.|..+...++.+.+.++.+.-    -.-+++..||+.
T Consensus       371 g~v~~~~~~~~~~~~~~~~ss~----~~P~~~y~~d~~  404 (414)
T PF02897_consen  371 GSVSGVSGDFDSDELRFSYSSF----TTPPTVYRYDLA  404 (414)
T ss_dssp             SEEEEEES-TT-SEEEEEEEET----TEEEEEEEEETT
T ss_pred             eEEeccCCCCCCCEEEEEEeCC----CCCCEEEEEECC
Confidence            3455666666666666665522    223567777776

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.27  Score=47.78  Aligned_cols=198  Identities=17%  Similarity=0.201  Sum_probs=125.2

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceE-EecCCCCcceeeeecCCCCceEEecC---CC
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTEPYVLSGGK---DK  218 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg  218 (496)
                      -..++.++...+..++...+..|.+.|..+..            .... ..+. .  ...++++|+++.+..+..   ++
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~------------~~~~~~vG~-~--P~~~~~~~~~~~vYV~n~~~~~~  140 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT------------VLGSIPVGL-G--PVGLAVDPDGKYVYVANAGNGNN  140 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccc------------eeeEeeecc-C--CceEEECCCCCEEEEEecccCCc
Confidence            34667777566677777778899999966552            2222 2233 2  368999999976665544   67


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      ++.+.|..+.....                                        ....-..+ ..+++.|++...+++-.
T Consensus       141 ~vsvid~~t~~~~~----------------------------------------~~~vG~~P-~~~a~~p~g~~vyv~~~  179 (381)
T COG3391         141 TVSVIDAATNKVTA----------------------------------------TIPVGNTP-TGVAVDPDGNKVYVTNS  179 (381)
T ss_pred             eEEEEeCCCCeEEE----------------------------------------EEecCCCc-ceEEECCCCCeEEEEec
Confidence            88888876543321                                        11111123 78999999965666667


Q ss_pred             CCCeEEEEEccCCCcccee-e---eccCCCCeEEEEecCCCCcEEEEEc-CC--CcEEEEeCCCCCCCCCCCCceE-ecc
Q 010997          299 DDSCLILWDARVGTSPVIK-V---EKAHDADLHCVDWNPLDDNLILTGS-AD--NSVRMFDRRNLTSNGVGSPINK-FEG  370 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~-~---~~~~~~~v~~i~~sp~~~~~l~sgs-~d--g~i~iwd~~~~~~~~~~~~~~~-~~~  370 (496)
                      .++.|.+.|.....  ... .   ...-......+.++| ++..+.+.. .+  +.+...|...      +..... +..
T Consensus       180 ~~~~v~vi~~~~~~--v~~~~~~~~~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~------~~v~~~~~~~  250 (381)
T COG3391         180 DDNTVSVIDTSGNS--VVRGSVGSLVGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTAT------GNVTATDLPV  250 (381)
T ss_pred             CCCeEEEEeCCCcc--eeccccccccccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCC------ceEEEecccc
Confidence            89999999976654  221 0   112233456788899 776544433 33  5888888887      333332 111


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      -......+..+|+|..+.+.-+..+.+.+-|....
T Consensus       251 ~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         251 GSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             ccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            11145678999999977655565688888888763

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.08  E-value=0.28  Score=48.12  Aligned_cols=59  Identities=10%  Similarity=0.167  Sum_probs=38.0

Q ss_pred             CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      +....+....++.+.+.+-..      .   ..+. ..+++..++.||++++ +|.-..+|.+.|....-
T Consensus       189 ~~~~~i~~~~g~~i~~i~~~~------~---~~i~-~~~~i~~iavSpng~~-iAl~t~~g~l~v~ssDf  247 (410)
T PF04841_consen  189 DRVVEILLANGETIYIIDENS------F---KQID-SDGPIIKIAVSPNGKF-IALFTDSGNLWVVSSDF  247 (410)
T ss_pred             CcceEEEEecCCEEEEEEccc------c---cccc-CCCCeEEEEECCCCCE-EEEEECCCCEEEEECcc
Confidence            344444445556666555333      1   1122 2468999999999995 67788889998887544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.016  Score=60.77  Aligned_cols=162  Identities=9%  Similarity=0.091  Sum_probs=102.1

Q ss_pred             ceEEecCCCCcceeeeecCCCCceE--EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997          188 DLILTGHQDNAEFALAMCPTEPYVL--SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  265 (496)
Q Consensus       188 ~~~l~~h~~~~v~~l~~~p~~~~l~--sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (496)
                      ...+.-|..-++..+...+|+...+  ..+.+-.|..+|++.-.........                            
T Consensus        92 ~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~----------------------------  143 (1405)
T KOG3630|consen   92 NLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTV----------------------------  143 (1405)
T ss_pred             ccceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcc----------------------------
Confidence            3556666666677777778876433  3344557889998753221110000                            


Q ss_pred             CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997          266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  345 (496)
Q Consensus       266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d  345 (496)
                       .............-..++.|+|.-+..++.+..|+.|++..+..... .... .......+|++|+| .+..++.|...
T Consensus       144 -pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~-~v~s-~p~t~~~Tav~WSp-rGKQl~iG~nn  219 (1405)
T KOG3630|consen  144 -PLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ-NVTS-FPVTNSQTAVLWSP-RGKQLFIGRNN  219 (1405)
T ss_pred             -ccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh-hhcc-cCcccceeeEEecc-ccceeeEecCC
Confidence             00000111122344568899998777788899999999987765442 2222 24567789999999 99999999999


Q ss_pred             CcEEEEeCCCCCCCCCCCCceEecc----CCCCEEEEEEcCCCCCEE
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKFEG----HSAAVLCVQWSPDKSSVF  388 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~~~----h~~~i~~l~~sp~~~~ll  388 (496)
                      |++.-|-..-       .....+..    ....|.+|+|-....+++
T Consensus       220 Gt~vQy~P~l-------eik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  220 GTEVQYEPSL-------EIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             CeEEEeeccc-------ceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            9999887553       21122111    146799999988877544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.07  E-value=0.0016  Score=65.65  Aligned_cols=72  Identities=14%  Similarity=0.213  Sum_probs=62.1

Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~  355 (496)
                      .+++++|+|.. -+|+.|-.-|.+.+|...+.+  .......|..+|..+.||+ +|..++++..-|.|.+|....
T Consensus        61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e--~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE--THTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ehhhhccChHH-HHHhhccccceeEEEecCCce--eeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence            35679999987 788899899999999987766  4455568999999999999 999999999999999998763

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.06  E-value=0.14  Score=48.90  Aligned_cols=136  Identities=13%  Similarity=0.072  Sum_probs=63.7

Q ss_pred             CCeEEEEEccCCCccceeeeccCCC--CeEEEEe--cCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-------
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDA--DLHCVDW--NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-------  368 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~i~~--sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-------  368 (496)
                      ..++++||+.+.+  .++++.-...  ....|.|  +|....-++.+...++|..|--..... -..+.+..+       
T Consensus       221 G~~l~vWD~~~r~--~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  221 GHSLHVWDWSTRK--LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             --EEEEEETTTTE--EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--S
T ss_pred             cCeEEEEECCCCc--EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCc
Confidence            4689999999887  4444432222  2334544  553333455444555555553321000 000111111       


Q ss_pred             ----------ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec--C--------
Q 010997          369 ----------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA--G--------  428 (496)
Q Consensus       369 ----------~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------  428 (496)
                                ..-..-|+.|..|.|.++|++++-.+|.|+.||++....            +.+..+..  |        
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~------------Pkl~gqv~lGG~~~~~~~~  365 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN------------PKLVGQVFLGGSIRKGDHP  365 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-------------EEEEEEE-BTTTT-B--T
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC------------CcEEeEEEECcEeccCCCc
Confidence                      112356899999999999998998999999999988522            23333211  1        


Q ss_pred             ------CCCCcceEEecCCCCcEEEEec
Q 010997          429 ------HRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       429 ------h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                            -.+...-+..|.+|+.+.+|.|
T Consensus       366 ~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  366 VVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             TS------S----EEE-TTSSEEEEE--
T ss_pred             cccccccCCCCCeEEEccCCeEEEEEee
Confidence                  0122355778888888888765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.06  E-value=0.026  Score=42.92  Aligned_cols=68  Identities=18%  Similarity=0.306  Sum_probs=50.8

Q ss_pred             eEEEEecCCC---CcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997          326 LHCVDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  402 (496)
Q Consensus       326 v~~i~~sp~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~  402 (496)
                      |+++++...+   .+.|++|+.|..||+|+-.        ..+.++.. ...|++++-...+.  |+.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--------e~~~Ei~e-~~~v~~L~~~~~~~--F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--------EIVAEITE-TDKVTSLCSLGGGR--FAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--------cEEEEEec-ccceEEEEEcCCCE--EEEEecCCEEEEEeC
Confidence            5666665433   3789999999999999855        45666663 56677887776654  678889999999986


Q ss_pred             CC
Q 010997          403 EK  404 (496)
Q Consensus       403 ~~  404 (496)
                      ..
T Consensus        71 ~~   72 (111)
T PF14783_consen   71 SQ   72 (111)
T ss_pred             cc
Confidence            54

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.04  E-value=0.11  Score=49.22  Aligned_cols=116  Identities=15%  Similarity=0.128  Sum_probs=72.1

Q ss_pred             cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997          276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~  355 (496)
                      ...++|++++-. .+ . |+.+ .++.|.+|++...+.-...........+.++...   +++++.|.....|.++..+.
T Consensus        86 ~~~g~V~ai~~~-~~-~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen   86 EVKGPVTAICSF-NG-R-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EESS-EEEEEEE-TT-E-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEET
T ss_pred             eecCcceEhhhh-CC-E-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEc
Confidence            346789988876 33 4 3333 3489999999887711111122233456666654   56999999988898885554


Q ss_pred             CCCCCCCCCceEec--cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          356 LTSNGVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       356 ~~~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      .     ...+..+.  .....++++.|-+++. .++.+..+|.+.++....
T Consensus       159 ~-----~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  159 E-----NNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             T-----TE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-S
T ss_pred             c-----CCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECC
Confidence            1     12233332  2345688999987776 566899999999999864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.03  E-value=0.04  Score=52.94  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=35.5

Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH  228 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~  228 (496)
                      .+.+.|||+.++...          ++  ... . ..+....|+|+|+.++-.. ++.|.+++..++
T Consensus        22 ~~~y~i~d~~~~~~~----------~l--~~~-~-~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~   73 (353)
T PF00930_consen   22 KGDYYIYDIETGEIT----------PL--TPP-P-PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG   73 (353)
T ss_dssp             EEEEEEEETTTTEEE----------ES--S-E-E-TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred             ceeEEEEecCCCceE----------EC--cCC-c-cccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence            457999999987211          11  111 2 2467899999999888775 788999988665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.98  E-value=0.079  Score=50.22  Aligned_cols=195  Identities=12%  Similarity=0.172  Sum_probs=102.4

Q ss_pred             CcEEEEEeC----------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997          153 TKIVATHTD----------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  222 (496)
Q Consensus       153 ~~~lat~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i  222 (496)
                      ..+|+.|+.          .|.|.++++...+..       ..+..........++|++++-- ++ +|+.|. .+.|.+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~-------~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v  111 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN-------NFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYV  111 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS------------EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEccccc-------ceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEE
Confidence            567777654          288999999874110       0011122222223478888765 34 444444 589999


Q ss_pred             EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe
Q 010997          223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  302 (496)
Q Consensus       223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  302 (496)
                      |++.....                                     ......+ .....+.++...  + ++++.|.....
T Consensus       112 ~~l~~~~~-------------------------------------l~~~~~~-~~~~~i~sl~~~--~-~~I~vgD~~~s  150 (321)
T PF03178_consen  112 YDLDNSKT-------------------------------------LLKKAFY-DSPFYITSLSVF--K-NYILVGDAMKS  150 (321)
T ss_dssp             EEEETTSS-------------------------------------EEEEEEE--BSSSEEEEEEE--T-TEEEEEESSSS
T ss_pred             EEccCccc-------------------------------------chhhhee-cceEEEEEEecc--c-cEEEEEEcccC
Confidence            99975430                                     0011111 122356666655  3 57888888888


Q ss_pred             EEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC-CC-CceE-ecc-CCCCEEE
Q 010997          303 LILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV-GS-PINK-FEG-HSAAVLC  377 (496)
Q Consensus       303 i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~-~~~~-~~~-h~~~i~~  377 (496)
                      +.++..+......... .......++++.|-+ +++.++.+..+|.+.++.......... +. .+.. ..- ....|++
T Consensus       151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~  229 (321)
T PF03178_consen  151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNS  229 (321)
T ss_dssp             EEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEE
T ss_pred             EEEEEEEccCCEEEEEEecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccce
Confidence            8888665432112221 123455688888886 456999999999999998864221111 12 1221 111 3456777


Q ss_pred             E---EEcCC--CCC-----EEEEEeCCCcEEE
Q 010997          378 V---QWSPD--KSS-----VFGSSAEDGLLNI  399 (496)
Q Consensus       378 l---~~sp~--~~~-----llas~~~dg~i~i  399 (496)
                      +   ++.|.  +..     .++-++.+|.|-+
T Consensus       230 ~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  230 FRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             EEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            7   55552  221     2446677888873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.95  E-value=0.092  Score=53.64  Aligned_cols=154  Identities=13%  Similarity=0.074  Sum_probs=83.4

Q ss_pred             ceEEEEcCCC-----eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC------cEEEEeCCCCCCCC
Q 010997          292 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRNLTSNG  360 (496)
Q Consensus       292 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg------~i~iwd~~~~~~~~  360 (496)
                      .+.+.||.||     +|-.||.++.+................+.+   ++.+.++|+.++      ++..||..+..   
T Consensus       382 ~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~---  455 (571)
T KOG4441|consen  382 KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNT---  455 (571)
T ss_pred             EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCc---
Confidence            6888888886     478888888764332222111222222233   688888888664      56788887743   


Q ss_pred             CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc-----EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcce
Q 010997          361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL-----LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  435 (496)
Q Consensus       361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  435 (496)
                       +..+..+..-..... ++.- ++ .|++.||.|+.     |..||..+.             ....+.........+..
T Consensus       456 -W~~~~~M~~~R~~~g-~a~~-~~-~iYvvGG~~~~~~~~~VE~ydp~~~-------------~W~~v~~m~~~rs~~g~  518 (571)
T KOG4441|consen  456 -WTLIAPMNTRRSGFG-VAVL-NG-KIYVVGGFDGTSALSSVERYDPETN-------------QWTMVAPMTSPRSAVGV  518 (571)
T ss_pred             -eeecCCcccccccce-EEEE-CC-EEEEECCccCCCccceEEEEcCCCC-------------ceeEcccCccccccccE
Confidence             444444433222222 2222 23 38889998763     666776652             11111111111222222


Q ss_pred             EEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997          436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  473 (496)
Q Consensus       436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~  473 (496)
                      +.   .+..+.+.++.|  -...-++|..||+....+.
T Consensus       519 ~~---~~~~ly~vGG~~--~~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  519 VV---LGGKLYAVGGFD--GNNNLNTVECYDPETDTWT  551 (571)
T ss_pred             EE---ECCEEEEEeccc--CccccceeEEcCCCCCcee
Confidence            22   255667766665  4455578888988755443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.86  E-value=0.14  Score=50.14  Aligned_cols=97  Identities=14%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccC-CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      ..++.++.+|.+..+|..+++  ..-....- .....+...   .+..|+.++.+|.|.++|..+      ++.+...+.
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~--~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ld~~t------G~~~~~~~~  363 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGV--ELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHWINRED------GRFVAQQKV  363 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCc--EEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEEEECCC------CCEEEEEEc
Confidence            457777889999999998876  22211111 111122222   256778889999999999988      777766654


Q ss_pred             CCCCEEE-EEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997          371 HSAAVLC-VQWSPDKSSVFGSSAEDGLLNIWDY  402 (496)
Q Consensus       371 h~~~i~~-l~~sp~~~~llas~~~dg~i~iwd~  402 (496)
                      ....+.+ ..+. ++ .|+ .++.||.|..+++
T Consensus       364 ~~~~~~s~P~~~-~~-~l~-v~t~~G~l~~~~~  393 (394)
T PRK11138        364 DSSGFLSEPVVA-DD-KLL-IQARDGTVYAITR  393 (394)
T ss_pred             CCCcceeCCEEE-CC-EEE-EEeCCceEEEEeC
Confidence            3333322 2222 33 354 7788999888764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.85  E-value=0.085  Score=49.08  Aligned_cols=199  Identities=10%  Similarity=0.096  Sum_probs=103.5

Q ss_pred             eeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997          201 ALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  279 (496)
Q Consensus       201 ~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  279 (496)
                      +-.|.++.. ++.+--..+.|.-|+..++..                                         ..+.... 
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-----------------------------------------~~~~~p~-   66 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK-----------------------------------------RVFPSPG-   66 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCce-----------------------------------------EEEECCC-
Confidence            445777766 455556678888888865432                                         2222222 


Q ss_pred             ceeEE-EEccCCCceEEEEcCCCeEEEEEccCCCc-cceeee-cc-CCCCeEEEEecCCCCcEEEEEcC-----------
Q 010997          280 TVEDV-TFCPSSAQEFCSVGDDSCLILWDARVGTS-PVIKVE-KA-HDADLHCVDWNPLDDNLILTGSA-----------  344 (496)
Q Consensus       280 ~v~~l-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~-~~~~v~~i~~sp~~~~~l~sgs~-----------  344 (496)
                      .+.++ .....+  .|+++..  -+.+++...+.. ...... .+ -....+.+...| ++.+.++...           
T Consensus        67 ~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~  141 (307)
T COG3386          67 GFSSGALIDAGG--RLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERP  141 (307)
T ss_pred             CcccceeecCCC--eEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCC
Confidence            22333 333333  4555543  356666644442 111111 11 124567778888 6665554333           


Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  424 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  424 (496)
                      -|.|..+|. .      +..+..+..+-..-+.|+|||+++.++++=+..+.|.-|++....-...       .+ ....
T Consensus       142 ~G~lyr~~p-~------g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~-------~~-~~~~  206 (307)
T COG3386         142 TGSLYRVDP-D------GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG-------GR-RGFV  206 (307)
T ss_pred             cceEEEEcC-C------CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC-------Cc-ceEE
Confidence            133333333 2      3444444554555678999999998877777678899888863110000       11 2222


Q ss_pred             EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ......+..-.++...+|...++...       .-+.|.+|++.
T Consensus       207 ~~~~~~G~PDG~~vDadG~lw~~a~~-------~g~~v~~~~pd  243 (307)
T COG3386         207 DFDEEPGLPDGMAVDADGNLWVAAVW-------GGGRVVRFNPD  243 (307)
T ss_pred             EccCCCCCCCceEEeCCCCEEEeccc-------CCceEEEECCC
Confidence            22233445556667666654432211       11378888776

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.78  E-value=0.16  Score=45.56  Aligned_cols=175  Identities=10%  Similarity=0.131  Sum_probs=97.5

Q ss_pred             eeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec-cCCCCeEEEEecCCCCcEEEEEcCCCcEEE
Q 010997          272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRM  350 (496)
Q Consensus       272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~sgs~dg~i~i  350 (496)
                      ..+.+-...+.+++|+|+...++++....+.|..++.. ++  .+.... ......-.|++.. ++.++++.-.++.+.+
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~--vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK--VLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYI   90 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC--EEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEE
Confidence            34455566799999999876788888889999888864 44  333332 2346788888876 6777777667899999


Q ss_pred             EeCCCCCCCCCCCCceEec-----cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997          351 FDRRNLTSNGVGSPINKFE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  425 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~~~~-----~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  425 (496)
                      +++...........+..+.     .+...+-.++|+|.+..+| .+-+..-..||.+......          .......
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~----------~~~~~~~  159 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGG----------FDLFVSD  159 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-S----------S--EEEE
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCc----------cceeecc
Confidence            9985422110011111121     3456689999999888777 4555666777777652100          0000110


Q ss_pred             ------ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          426 ------HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       426 ------~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                            .......+.+++++|....+++-..+.       ..|.++|..
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es-------~~l~~~d~~  201 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES-------RLLLELDRQ  201 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTT-------TEEEEE-TT
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCC-------CeEEEECCC
Confidence                  112344678899999877766654443       677777754

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.71  E-value=0.29  Score=45.44  Aligned_cols=165  Identities=13%  Similarity=0.142  Sum_probs=82.5

Q ss_pred             ccCCCceEEEEcCCCeEEEEEccCCCccceee---eccCCCCe-EEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKV---EKAHDADL-HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG  362 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v-~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  362 (496)
                      -|.++.-|.+-|.||.+.-..+....++....   +..-..++ ..-++.. .+..++--+.+|.|+-.|+....    .
T Consensus       143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~----~  217 (342)
T PF06433_consen  143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDS----A  217 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSS----E
T ss_pred             EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCc----c
Confidence            35555568888899999999888543222111   11111222 2333333 34455556788999998888622    1


Q ss_pred             CCceEecc----------CCCCEEEEEEcCCCCCEEEEEeC-------CC--cEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997          363 SPINKFEG----------HSAAVLCVQWSPDKSSVFGSSAE-------DG--LLNIWDYEKVGKKVEQGPRTTNYPAGLF  423 (496)
Q Consensus       363 ~~~~~~~~----------h~~~i~~l~~sp~~~~llas~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~  423 (496)
                      .....+..          ..+.-.-+++++....|++.--.       |+  .|-++|+.+.               +.+
T Consensus       218 ~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------------krv  282 (342)
T PF06433_consen  218 KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------------KRV  282 (342)
T ss_dssp             EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------------EEE
T ss_pred             cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------------eEE
Confidence            11122211          01223345666544444432211       11  2555555553               333


Q ss_pred             EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHh
Q 010997          424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  484 (496)
Q Consensus       424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~  484 (496)
                      ..... ...+.+++.+.+..=++.+.+.      .++.|.+||..      +++.++++++
T Consensus       283 ~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~------~~~~l~v~D~~------tGk~~~~~~~  330 (342)
T PF06433_consen  283 ARIPL-EHPIDSIAVSQDDKPLLYALSA------GDGTLDVYDAA------TGKLVRSIEQ  330 (342)
T ss_dssp             EEEEE-EEEESEEEEESSSS-EEEEEET------TTTEEEEEETT------T--EEEEE--
T ss_pred             EEEeC-CCccceEEEccCCCcEEEEEcC------CCCeEEEEeCc------CCcEEeehhc
Confidence            33321 2357789998877545543322      24899999999      6666655543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.67  E-value=0.0086  Score=62.27  Aligned_cols=65  Identities=22%  Similarity=0.334  Sum_probs=51.3

Q ss_pred             CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      -...++.|++.|.|-..|++..     -.+.+.-..-.++|++++|+.+|. +++.|-.+|.|.+||+...
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCC
Confidence            4567899999999999998862     122333344578999999999998 4668888999999999984

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.66  E-value=0.41  Score=43.12  Aligned_cols=175  Identities=13%  Similarity=0.243  Sum_probs=106.2

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      .+-.+.|.++.|+|++..++++ .+.+.-.||=...+...          ....+.+-++  --++.+..+|.+.++--+
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~Gdli----------rtiPL~g~~D--pE~Ieyig~n~fvi~dER  148 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLI----------RTIPLTGFSD--PETIEYIGGNQFVIVDER  148 (316)
T ss_pred             ccccccccceeeCCCcceEEEe-cCCCceEEEEecCCceE----------EEecccccCC--hhHeEEecCCEEEEEehh
Confidence            3455669999999955555544 45555555543333111          1123445555  257889888888888889


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      ++.+.++.+............                              .-++............++|.|.. ..|..
T Consensus       149 ~~~l~~~~vd~~t~~~~~~~~------------------------------~i~L~~~~k~N~GfEGlA~d~~~-~~l~~  197 (316)
T COG3204         149 DRALYLFTVDADTTVISAKVQ------------------------------KIPLGTTNKKNKGFEGLAWDPVD-HRLFV  197 (316)
T ss_pred             cceEEEEEEcCCccEEeccce------------------------------EEeccccCCCCcCceeeecCCCC-ceEEE
Confidence            999999988754221111110                              00011111225567899999988 56666


Q ss_pred             EcCCCeEEEEEccCCCccc-eeeeccC-------CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997          297 VGDDSCLILWDARVGTSPV-IKVEKAH-------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~-~~~~~~~-------~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~  355 (496)
                      +-+-.-+.||.+....... ......+       -..|..+.|++..+.+|+-+..++.+.-.|..-
T Consensus       198 aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         198 AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             EEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence            7666777777665332111 1111111       245778899987888999999999988888774

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.59  Score=43.56  Aligned_cols=151  Identities=12%  Similarity=0.113  Sum_probs=84.1

Q ss_pred             ceeEEEEccCCCceEEEEc-----C-----CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE-cCCCcE
Q 010997          280 TVEDVTFCPSSAQEFCSVG-----D-----DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSV  348 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~-----~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~dg~i  348 (496)
                      ..+++...|+|.-++-+.+     .     -|.|..+|. .+.  .......+-..-+.|+||| ++..|..+ +..+.|
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~--~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i  187 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG--VVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRI  187 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC--EEEeecCcEEecCceEECC-CCCEEEEEeCCCCeE
Confidence            4567777888732222222     1     133444443 333  3444445556678999999 77655555 445888


Q ss_pred             EEEeCCCCCCCCCC-CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC-cEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997          349 RMFDRRNLTSNGVG-SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  426 (496)
Q Consensus       349 ~iwd~~~~~~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  426 (496)
                      .-|++......... .....+....+..-.++...+|. +.+++..+| .|.+|+...                .++...
T Consensus       188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~~~~pdG----------------~l~~~i  250 (307)
T COG3386         188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWGGGRVVRFNPDG----------------KLLGEI  250 (307)
T ss_pred             EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccCCceEEEECCCC----------------cEEEEE
Confidence            88887631100001 11222333456666777777887 554444443 899998873                344444


Q ss_pred             cCCCCCcceEEecC-CCCcEEEEecC
Q 010997          427 AGHRDKVVDFHWNA-SDPWTVVSVSD  451 (496)
Q Consensus       427 ~~h~~~V~~~~~~p-~~~~l~~s~s~  451 (496)
                      .-....+++++|-- +...|+++.+.
T Consensus       251 ~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         251 KLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             ECCCCCCccceEeCCCcCEEEEEecC
Confidence            44446678888853 34566665543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.59  E-value=0.00085  Score=67.96  Aligned_cols=185  Identities=14%  Similarity=0.220  Sum_probs=104.0

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC---CCCceEEe
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEPYVLSG  214 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p---~~~~l~sg  214 (496)
                      +.+|.|-.++|-.-+-..++  -.-|.+.|||+.--.      |.-......+.....+..+.-+.|.|   +.-++..+
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~------G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~  201 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQ------GEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYG  201 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhc------cccccceEEeecCcCCCCcceeeecccccccceeeec
Confidence            67788888888552222222  344789999987531      11122333333333333445566665   34467777


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      -.+++|++..+++...                                         ..+.+|...+.+++|-..| ...
T Consensus       202 ~~~~~i~lL~~~ra~~-----------------------------------------~l~rsHs~~~~d~a~~~~g-~~~  239 (1283)
T KOG1916|consen  202 LKGGEIRLLNINRALR-----------------------------------------SLFRSHSQRVTDMAFFAEG-VLK  239 (1283)
T ss_pred             cCCCceeEeeechHHH-----------------------------------------HHHHhcCCCcccHHHHhhc-hhh
Confidence            7888998887764321                                         3455688888888876665 211


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC-
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-  373 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-  373 (496)
                      +.+                                 .+| ||..||.+..||.+++|-+.-... ....+++..+.|.+ 
T Consensus       240 l~~---------------------------------lSp-DGtv~a~a~~dG~v~f~Qiyi~g~-~~~rclhewkphd~~  284 (1283)
T KOG1916|consen  240 LAS---------------------------------LSP-DGTVFAWAISDGSVGFYQIYITGK-IVHRCLHEWKPHDKH  284 (1283)
T ss_pred             hee---------------------------------eCC-CCcEEEEeecCCccceeeeeeecc-ccHhhhhccCCCCCC
Confidence            111                                 577 788888888888777775543211 01356666666663 


Q ss_pred             CEEEEEEcCCC---------CCEEEEEeCCCcEEEEECCCCCc
Q 010997          374 AVLCVQWSPDK---------SSVFGSSAEDGLLNIWDYEKVGK  407 (496)
Q Consensus       374 ~i~~l~~sp~~---------~~llas~~~dg~i~iwd~~~~~~  407 (496)
                      +-.|.-++.+.         .+++-+...+..+++|....+.+
T Consensus       285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C  327 (1283)
T KOG1916|consen  285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC  327 (1283)
T ss_pred             CceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence            32222233221         11333333466788998776533

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.55  E-value=0.19  Score=44.11  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             EEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 010997          285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  364 (496)
Q Consensus       285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~  364 (496)
                      ...++...+++.|+..+.+.--|..+++  ... ...-...|.+-+.-  -+++++.|...|.+.+.+..+      +..
T Consensus        17 VV~~dskT~v~igSHs~~~~avd~~sG~--~~W-e~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~t------Gs~   85 (354)
T KOG4649|consen   17 VVCNDSKTLVVIGSHSGIVIAVDPQSGN--LIW-EAILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKT------GSQ   85 (354)
T ss_pred             EEecCCceEEEEecCCceEEEecCCCCc--EEe-ehhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecc------hhh
Confidence            3445556789999999999999999887  222 22334455554443  367799999999999999998      766


Q ss_pred             ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ...+..-..-=.+....+++. ++..|+.|+..+.-|..+.
T Consensus        86 ~w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen   86 IWNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             eeeeeehhhhccceEEcCCCc-eEEEecCCCcEEEeccccc
Confidence            766654333223445566777 6679999999999998875

>PHA02713 hypothetical protein; Provisional

Probab=96.48  E-value=0.069  Score=54.60  Aligned_cols=93  Identities=10%  Similarity=0.078  Sum_probs=51.1

Q ss_pred             eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC------cEEEEeCCC-CCCCCCCCCceEeccCCCC
Q 010997          302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN------SVRMFDRRN-LTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg------~i~iwd~~~-~~~~~~~~~~~~~~~h~~~  374 (496)
                      .+..||..+.+................+++   ++.+.+.|+.++      .+..||..+ ..    +..+..+......
T Consensus       433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~~~~m~~~r~~  505 (557)
T PHA02713        433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WELITTTESRLSA  505 (557)
T ss_pred             eEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCC----eeEccccCccccc
Confidence            577888887663222222111111112222   567777777642      467888876 33    4444455443333


Q ss_pred             EEEEEEcCCCCCEEEEEeCCC--cEEEEECCC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDG--LLNIWDYEK  404 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg--~i~iwd~~~  404 (496)
                      ...+.+  ++ .|++.|+.|+  .+..||..+
T Consensus       506 ~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        506 LHTILH--DN-TIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             ceeEEE--CC-EEEEEeeecceeehhhcCccc
Confidence            333333  33 4889999888  666777665

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.47  E-value=0.01  Score=37.52  Aligned_cols=32  Identities=22%  Similarity=0.444  Sum_probs=28.6

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE  171 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~  171 (496)
                      ....|.+++|+| ..++||.|+.+|.|.||.+.
T Consensus        10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            445699999999 88899999999999999984

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.38  E-value=1.3  Score=44.81  Aligned_cols=74  Identities=9%  Similarity=-0.098  Sum_probs=40.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcc-eeeeecCCCCceEEecCCCcEEEEecCCcccccc
Q 010997          155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE-FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA  233 (496)
Q Consensus       155 ~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v-~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~  233 (496)
                      .+..++.++.|+-.|..++...........      ........+ ..+... ++..++.++.+|.|.-+|.++++....
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~------~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~  135 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLP------ADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK  135 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCC------ccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee
Confidence            455677788999999888743322110000      000000000 011111 225777888899999999998876655


Q ss_pred             CC
Q 010997          234 TD  235 (496)
Q Consensus       234 ~~  235 (496)
                      ..
T Consensus       136 ~~  137 (488)
T cd00216         136 FG  137 (488)
T ss_pred             ec
Confidence            43

The alignment model contains an 8-bladed beta-propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.32  E-value=1.1  Score=44.21  Aligned_cols=205  Identities=11%  Similarity=0.126  Sum_probs=107.1

Q ss_pred             ceeeeecCCCCceEEe-cCCC----cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997          199 EFALAMCPTEPYVLSG-GKDK----SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  273 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg-~~Dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (496)
                      +....++|+|++||-+ +..|    .|++.|++++....                                       ..
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---------------------------------------d~  166 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---------------------------------------DG  166 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---------------------------------------EE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---------------------------------------Cc
Confidence            3467889999987743 3333    59999998763210                                       11


Q ss_pred             eecCCCceeEEEEccCCCceEEEEcCC----------CeEEEEEccCCCccceeeeccCCCC--eEEEEecCCCCcEEEE
Q 010997          274 YNGHEDTVEDVTFCPSSAQEFCSVGDD----------SCLILWDARVGTSPVIKVEKAHDAD--LHCVDWNPLDDNLILT  341 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~--v~~i~~sp~~~~~l~s  341 (496)
                      +..  .....+.|.+++..++.+...+          ..|..|.+.+........+......  ...+..++ ++.+|+.
T Consensus       167 i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i  243 (414)
T PF02897_consen  167 IEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFI  243 (414)
T ss_dssp             EEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEE
T ss_pred             ccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEE
Confidence            111  1112389999985555665333          2377888776653323344333332  56888898 7777665


Q ss_pred             EcCC----CcEEEEeCCCCCCCCCCCCceEeccCCCCEE-EEEEcCCCCCEEEEEeC---CCcEEEEECCCCCcccCCCC
Q 010997          342 GSAD----NSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-CVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGP  413 (496)
Q Consensus       342 gs~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~-~l~~sp~~~~llas~~~---dg~i~iwd~~~~~~~~~~~~  413 (496)
                      .+..    ..+.+.|+.... .. ......+......+. .+... .+. +++....   .+.|.-.++.....      
T Consensus       244 ~~~~~~~~s~v~~~d~~~~~-~~-~~~~~~l~~~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~------  313 (414)
T PF02897_consen  244 SSSSGTSESEVYLLDLDDGG-SP-DAKPKLLSPREDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSP------  313 (414)
T ss_dssp             EEESSSSEEEEEEEECCCTT-TS-S-SEEEEEESSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSG------
T ss_pred             EEEccccCCeEEEEeccccC-CC-cCCcEEEeCCCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEeccccccc------
Confidence            3332    347888887620 00 123344443444443 34443 443 4433322   46677777776421      


Q ss_pred             CCCCCCCeeEEEecCCCC--CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          414 RTTNYPAGLFFQHAGHRD--KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       414 ~~~~~~~~~~~~~~~h~~--~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                            ......+..|..  .+..+..  .+.+|++...++     ....|+++++.
T Consensus       314 ------~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~-----~~~~l~v~~~~  357 (414)
T PF02897_consen  314 ------AEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYREN-----GSSRLRVYDLD  357 (414)
T ss_dssp             ------GGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEET-----TEEEEEEEETT
T ss_pred             ------ccceeEEcCCCCceeEEEEEE--ECCEEEEEEEEC-----CccEEEEEECC
Confidence                  011113334444  3445544  466788877665     23578888887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.28  E-value=0.08  Score=51.14  Aligned_cols=144  Identities=17%  Similarity=0.191  Sum_probs=95.5

Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC------CcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD------DNLILTGSADNSVRMFDRRNLTSNGVGSPI  365 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~------~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  365 (496)
                      .+|.++..-..|+-.|+..++  ++....-+.. |+-+.+.|..      ...-+.|=.|..|.-||+|-..    ...+
T Consensus       347 lil~~~~~~~~l~klDIE~GK--IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~----~~kl  419 (644)
T KOG2395|consen  347 LILMDGGEQDKLYKLDIERGK--IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG----KNKL  419 (644)
T ss_pred             eEeeCCCCcCcceeeecccce--eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccC----ccee
Confidence            455666666778888999988  5665554544 7777787731      1223446678889999999532    1122


Q ss_pred             eEeccC----CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          366 NKFEGH----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       366 ~~~~~h----~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      ..-++|    .....|.+-..+|.  +|.||.+|.|++||--.. .              -...+.|-..+|..+..+.+
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG~--IvvgS~~GdIRLYdri~~-~--------------AKTAlPgLG~~I~hVdvtad  482 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESGY--IVVGSLKGDIRLYDRIGR-R--------------AKTALPGLGDAIKHVDVTAD  482 (644)
T ss_pred             eeeeccccccccccceeeecCCce--EEEeecCCcEEeehhhhh-h--------------hhhcccccCCceeeEEeecc
Confidence            222333    23456666666764  579999999999997321 1              11224667789999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          442 DPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      |.+++++|-         ..+.+-++.
T Consensus       483 GKwil~Tc~---------tyLlLi~t~  500 (644)
T KOG2395|consen  483 GKWILATCK---------TYLLLIDTL  500 (644)
T ss_pred             CcEEEEecc---------cEEEEEEEe
Confidence            999998875         566666654

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.26  E-value=0.011  Score=50.66  Aligned_cols=145  Identities=14%  Similarity=0.177  Sum_probs=80.5

Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      .+..-+.||.|+-++++..+..+ ....-+.....-+.    -..-+++|+.+|.|.+|.....     +.....+..-.
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~-rse~~~~e~~~v~~----~~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s~~  101 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESC-RSERFIDEGQRVVT----ASAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCSGE  101 (238)
T ss_pred             hhccccCCcccccchhhhhhhhh-hhhhhhhcceeecc----cCceEEeecccceEEEecCCcc-----chHHHhhhccc
Confidence            34555678888888887655211 11112222222222    3567899999999999988742     12222222222


Q ss_pred             CCEEEEEEcCCCCC--EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC-CCcceEEecCCCCcEEEEe
Q 010997          373 AAVLCVQWSPDKSS--VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       373 ~~i~~l~~sp~~~~--llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~~p~~~~l~~s~  449 (496)
                      ..|.++-  |.++.  +..+++.||.|+.|++...               ..+.....|. .++..+..+..+..+. ++
T Consensus       102 e~i~~~I--p~~~~~~~~c~~~~dg~ir~~n~~p~---------------k~~g~~g~h~~~~~e~~ivv~sd~~i~-~a  163 (238)
T KOG2444|consen  102 ESIDLGI--PNGRDSSLGCVGAQDGRIRACNIKPN---------------KVLGYVGQHNFESGEELIVVGSDEFLK-IA  163 (238)
T ss_pred             ccceecc--ccccccceeEEeccCCceeeeccccC---------------ceeeeeccccCCCcceeEEecCCceEE-ee
Confidence            3333322  33332  6778999999999998764               3333344455 3444444444444333 22


Q ss_pred             cCCCCCCCCCCeEEEeecCCC
Q 010997          450 SDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                           -.|.|..++.|++...
T Consensus       164 -----~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  164 -----DTSHDRVLKKWNVEKI  179 (238)
T ss_pred             -----ccccchhhhhcchhhh
Confidence                 1145578888888743

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.20  E-value=0.02  Score=59.76  Aligned_cols=101  Identities=20%  Similarity=0.321  Sum_probs=74.8

Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      ..++.|+..|.+...|++..-.+ ...-..-..+|++++|+. ++..++.|-.+|.|.+||+..      +..++.+..|
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~------~k~l~~i~e~  171 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHR------AKILKVITEH  171 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccC------Ccceeeeeec
Confidence            46888999999999998764332 222334568999999999 999999999999999999998      7788888777


Q ss_pred             CCCEEEEEE---cCCCCCEEEEEeCCCcEEEEECC
Q 010997          372 SAAVLCVQW---SPDKSSVFGSSAEDGLLNIWDYE  403 (496)
Q Consensus       372 ~~~i~~l~~---sp~~~~llas~~~dg~i~iwd~~  403 (496)
                      ..+.+.+-+   ..++. .+.++...|.  +|.+.
T Consensus       172 ~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence            766555443   33444 4447766665  67654

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.19  E-value=0.23  Score=50.82  Aligned_cols=140  Identities=14%  Similarity=0.123  Sum_probs=74.8

Q ss_pred             CceeEEEEccCCCceEEEEc-----CCC--eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC------
Q 010997          279 DTVEDVTFCPSSAQEFCSVG-----DDS--CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------  345 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d------  345 (496)
                      ..+.+.+++|++....++..     .|.  .|.+++.....   .....+  ....+-.|+| ++..|++....      
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~---~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA---VQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc---eeeecC--CCCCCceECC-CCCceEEEecCcceEEE
Confidence            45778899999954444441     244  45555542211   112222  2478889999 77777666432      


Q ss_pred             ------CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC--CCcccCCCCCCCC
Q 010997          346 ------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVEQGPRTTN  417 (496)
Q Consensus       346 ------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~--~~~~~~~~~~~~~  417 (496)
                            +.+.+.++..      +....   ...+.|..+.|||||.++++..  ++.|.+=-+..  .+. ...      
T Consensus       424 ~~~~~~gql~~~~vd~------ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l------  485 (591)
T PRK13616        424 IRDPATGQLARTPVDA------SAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YAL------  485 (591)
T ss_pred             eccCCCceEEEEeccC------chhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eee------
Confidence                  2233333332      12111   2356799999999999865544  57777733322  111 000      


Q ss_pred             CCCeeEEEecCCCCCcceEEecCCCCc
Q 010997          418 YPAGLFFQHAGHRDKVVDFHWNASDPW  444 (496)
Q Consensus       418 ~~~~~~~~~~~h~~~V~~~~~~p~~~~  444 (496)
                      ..+..+  ..+-...+.++.|..++..
T Consensus       486 ~~~~~l--~~~l~~~~~~l~W~~~~~L  510 (591)
T PRK13616        486 TNPREV--GPGLGDTAVSLDWRTGDSL  510 (591)
T ss_pred             cccEEe--ecccCCccccceEecCCEE
Confidence            000111  1223334688999997763

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.06  E-value=0.23  Score=50.81  Aligned_cols=95  Identities=15%  Similarity=0.205  Sum_probs=54.2

Q ss_pred             ceEEEEcCCC------eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc-----EEEEeCCCCCCCC
Q 010997          292 QEFCSVGDDS------CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-----VRMFDRRNLTSNG  360 (496)
Q Consensus       292 ~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~-----i~iwd~~~~~~~~  360 (496)
                      .+.++||.++      ++..||..+...........-........+   ++.+.+.|+.|+.     |..||..+..   
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~---  502 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQ---  502 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCc---
Confidence            6778887554      578899888764322222211222222232   6788899988873     7778888743   


Q ss_pred             CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 010997          361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL  396 (496)
Q Consensus       361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~  396 (496)
                       +..+..+......+..+.+   +..+++.|+.||.
T Consensus       503 -W~~v~~m~~~rs~~g~~~~---~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  503 -WTMVAPMTSPRSAVGVVVL---GGKLYAVGGFDGN  534 (571)
T ss_pred             -eeEcccCccccccccEEEE---CCEEEEEecccCc
Confidence             4444333333333333333   3447888987754

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.92  E-value=1.2  Score=40.44  Aligned_cols=118  Identities=13%  Similarity=0.119  Sum_probs=67.4

Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEE-ccCCCccceeeeccC-CCCeEEEEecCCCCcEEEEEc---CCCcEEEEeCC
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWD-ARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGS---ADNSVRMFDRR  354 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs---~dg~i~iwd~~  354 (496)
                      .+..-.|.+++ .+.+....+...+++. ...+........... ...|..+.++| ++..+|.-.   .++.|.+=-+.
T Consensus        67 ~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   67 SLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             ccccccccCCC-CEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEE
Confidence            56777899987 5566655566666663 333331112111111 12899999999 887766654   35677776554


Q ss_pred             CCCCC---CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 010997          355 NLTSN---GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI  399 (496)
Q Consensus       355 ~~~~~---~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~i  399 (496)
                      .....   ....++.........+..+.|.+++..++++...++.+..
T Consensus       145 r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  145 RDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             eCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence            32221   0112233333345689999999999854444444554444

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.91  E-value=0.028  Score=35.60  Aligned_cols=32  Identities=25%  Similarity=0.596  Sum_probs=28.8

Q ss_pred             CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997          322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  354 (496)
Q Consensus       322 ~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~  354 (496)
                      ....|.+++|+| ...+||.|+.+|.|.++.+.
T Consensus        10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            446799999999 89999999999999999984

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.62  E-value=3.7  Score=43.39  Aligned_cols=164  Identities=9%  Similarity=0.156  Sum_probs=85.0

Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC--------------CcEEEEeCCCCCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD--------------NSVRMFDRRNLTS  358 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d--------------g~i~iwd~~~~~~  358 (496)
                      .++++. .+.+++.-+..-+....++. .-......+++.+ ...++++.+.-              ..++++|-.+.+ 
T Consensus       686 ~l~~~~-~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~-  761 (1096)
T KOG1897|consen  686 SLASAN-GGALTIGTIDEIQKLHIRTV-PLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE-  761 (1096)
T ss_pred             eEEEec-CCceEEEEecchhhcceeee-cCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCcee-
Confidence            355443 45677766654433233343 3345566777776 44444443321              136666666522 


Q ss_pred             CCCCCCceEeccC--CCCEEEEEEcCCCCCEEEEEeC----------CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997          359 NGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSSAE----------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  426 (496)
Q Consensus       359 ~~~~~~~~~~~~h--~~~i~~l~~sp~~~~llas~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  426 (496)
                         -...+.+...  ...|.++.|..+....++.|..          .|+|.||.+...++            .+++..+
T Consensus       762 ---vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~------------L~~v~e~  826 (1096)
T KOG1897|consen  762 ---VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS------------LELVAET  826 (1096)
T ss_pred             ---EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc------------eeeeeee
Confidence               1111222211  1246666788874434555542          47788887766211            1222222


Q ss_pred             cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEec
Q 010997          427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCT  493 (496)
Q Consensus       427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~  493 (496)
                      . -.+.|.++.--  ...++|+-+         ..|++|+..      .+..++.-..|..++..+.
T Consensus       827 ~-v~Gav~aL~~f--ngkllA~In---------~~vrLye~t------~~~eLr~e~~~~~~~~aL~  875 (1096)
T KOG1897|consen  827 V-VKGAVYALVEF--NGKLLAGIN---------QSVRLYEWT------TERELRIECNISNPIIALD  875 (1096)
T ss_pred             e-eccceeehhhh--CCeEEEecC---------cEEEEEEcc------ccceehhhhcccCCeEEEE
Confidence            1 13445554432  334565544         689999998      4556666677777776654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.55  E-value=0.3  Score=48.20  Aligned_cols=122  Identities=13%  Similarity=0.253  Sum_probs=76.0

Q ss_pred             cCCCceeEEEEccCC---CceEEEEcCCCeEEEEEccCCCc---cceeee-ccCCC----CeEEEEecCCCCcEEEEEcC
Q 010997          276 GHEDTVEDVTFCPSS---AQEFCSVGDDSCLILWDARVGTS---PVIKVE-KAHDA----DLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       276 ~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~~----~v~~i~~sp~~~~~l~sgs~  344 (496)
                      +.-..|..+.|.|-+   .--+++......|.+|.+-....   ...... .....    --....|+| ....|++-..
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~  132 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTA  132 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEec
Confidence            334568999999863   12466667788999999863221   011111 11111    123568999 7777777666


Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  403 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~  403 (496)
                      ...-.+++.+...    .+....+ ...+-|.|.+|.+||.+|+++.+..=.-+|||-.
T Consensus       133 ~dvSV~~sV~~d~----srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  133 RDVSVLPSVHCDS----SRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceeEeeeeeeCC----ceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            6555667777532    2223334 3567899999999999887766665567788754

>PHA02713 hypothetical protein; Provisional

Probab=95.38  E-value=0.39  Score=49.20  Aligned_cols=51  Identities=6%  Similarity=0.036  Sum_probs=27.4

Q ss_pred             ceEEEEcCCC-----eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997          292 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  345 (496)
Q Consensus       292 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d  345 (496)
                      .+++.||.++     .+..||..+..................++.   ++.+.+.|+.+
T Consensus       353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~  408 (557)
T PHA02713        353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRT  408 (557)
T ss_pred             EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCC
Confidence            6777777654     488899887653221111111111222232   57777888765

>PHA03098 kelch-like protein; Provisional

Probab=95.38  E-value=1.4  Score=45.24  Aligned_cols=103  Identities=6%  Similarity=0.085  Sum_probs=50.6

Q ss_pred             ceEEEEcCC------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC--------cEEEEeCCCCC
Q 010997          292 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--------SVRMFDRRNLT  357 (496)
Q Consensus       292 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg--------~i~iwd~~~~~  357 (496)
                      .+++.||.+      ..+..||..+.+.............. +++..  ++.+++.|+.++        .+.+||..+..
T Consensus       391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~  467 (534)
T PHA03098        391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNK  467 (534)
T ss_pred             EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence            567777632      45889998876532221111111111 22222  466777776532        38888887632


Q ss_pred             CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997          358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  404 (496)
Q Consensus       358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~  404 (496)
                          +..+..+.........+.+  ++. |++.|+.+     +.|.+||..+
T Consensus       468 ----W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        468 ----WTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             ----eeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCCC
Confidence                2222222111111122222  444 67777754     3577787765

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.37  E-value=2  Score=41.39  Aligned_cols=168  Identities=15%  Similarity=0.132  Sum_probs=73.9

Q ss_pred             EEEccCCCceEEEEc------CCCeEEEEEccCCCccceeeecc---CCCCeEEEEecCCCCcEEEEEcC----------
Q 010997          284 VTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKVEKA---HDADLHCVDWNPLDDNLILTGSA----------  344 (496)
Q Consensus       284 l~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~i~~sp~~~~~l~sgs~----------  344 (496)
                      +..-|+| .+++|+-      .-|-+.++|-.+.+  +......   ...--..+-|.| ..+.++|...          
T Consensus       135 ~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~--v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf  210 (461)
T PF05694_consen  135 VHCLPDG-RIMISALGDADGNGPGGFVLLDGETFE--VKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGF  210 (461)
T ss_dssp             EEE-SS---EEEEEEEETTS-S--EEEEE-TTT----EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT--
T ss_pred             eeecCCc-cEEEEeccCCCCCCCCcEEEEcCcccc--ccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCC
Confidence            3444666 5666642      12457777766544  2222211   123346677788 6777777652          


Q ss_pred             ----------CCcEEEEeCCCCCCCCCCCCceEeccCC--CCEEEEEEc--CCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997          345 ----------DNSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWS--PDKSSVFGSSAEDGLLNIWDYEKVGKKVE  410 (496)
Q Consensus       345 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~--~~i~~l~~s--p~~~~llas~~~dg~i~iwd~~~~~~~~~  410 (496)
                                ..++.+||+.+      .+.++++.--.  ..+..|.|.  |+..+=|+.+.-...|..|--...+.-..
T Consensus       211 ~~~d~~~~~yG~~l~vWD~~~------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a  284 (461)
T PF05694_consen  211 NPEDLEAGKYGHSLHVWDWST------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA  284 (461)
T ss_dssp             -TTTHHHH-S--EEEEEETTT------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE
T ss_pred             ChhHhhcccccCeEEEEECCC------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee
Confidence                      35799999998      77787776432  235566665  44554454554454554443322122110


Q ss_pred             CCCCCCCCCCe---------eEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          411 QGPRTTNYPAG---------LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       411 ~~~~~~~~~~~---------~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      .....  .|..         ++..+..-..-|+++..|.++++|.+|+=-+       |.|+.||+++.
T Consensus       285 ~kVi~--ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~-------GdvrqYDISDP  344 (461)
T PF05694_consen  285 EKVID--IPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH-------GDVRQYDISDP  344 (461)
T ss_dssp             EEEEE--E--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTT-------TEEEEEE-SST
T ss_pred             eEEEE--CCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccC-------CcEEEEecCCC
Confidence            00000  0000         0000000123579999999999999976554       99999999975

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.34  E-value=0.059  Score=33.00  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=28.8

Q ss_pred             CceeEEEecCCCC--cEEEEEeCCCcEEEEeCCCC
Q 010997          141 GEVNRIRELPQNT--KIVATHTDSPDVLIWDVEAQ  173 (496)
Q Consensus       141 ~~V~~l~~~p~~~--~~lat~~~dg~i~iwd~~~~  173 (496)
                      |+|.+++|+|..+  ++||..-..|.|.|+|+.+.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            5799999998666  79999989999999999854

It contains a characteristic DLL sequence motif.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.34  E-value=3.2  Score=40.78  Aligned_cols=87  Identities=7%  Similarity=0.121  Sum_probs=56.2

Q ss_pred             EEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 010997          285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  364 (496)
Q Consensus       285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~  364 (496)
                      .++.+. ...+....++.+.+.+-....  .   . ...+++..|+.|| +++++|.-..+|.+.+....-      .+.
T Consensus       185 ~l~~~~-~~~i~~~~g~~i~~i~~~~~~--~---i-~~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf------~~~  250 (410)
T PF04841_consen  185 LLSSDR-VVEILLANGETIYIIDENSFK--Q---I-DSDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDF------SEK  250 (410)
T ss_pred             EeecCc-ceEEEEecCCEEEEEEccccc--c---c-cCCCCeEEEEECC-CCCEEEEEECCCCEEEEECcc------cce
Confidence            344444 345555566677755533322  1   1 2346899999999 999999999999999987654      344


Q ss_pred             ceEeccC-CCCEEEEEEcCCCC
Q 010997          365 INKFEGH-SAAVLCVQWSPDKS  385 (496)
Q Consensus       365 ~~~~~~h-~~~i~~l~~sp~~~  385 (496)
                      +..+... ......+.|.-++.
T Consensus       251 ~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  251 LCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             eEEeecCcCCCCcEEEEECCCc
Confidence            5555433 34567888877654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.32  E-value=1.5  Score=39.80  Aligned_cols=156  Identities=20%  Similarity=0.251  Sum_probs=86.2

Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEe-CCCCCC
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD-RRNLTS  358 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd-~~~~~~  358 (496)
                      .+.+.++++++..+.+....++.-.||-.+.+.. .....  ....+..-.|++ ++.+.+....+...+++. ..... 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~--~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~-   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVL--TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT-   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeec--cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc-
Confidence            6788999999954444442333333443333331 12222  233788889999 677777777677777764 22211 


Q ss_pred             CCCCCCceEeccC--CCCEEEEEEcCCCCCEEEEE--eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997          359 NGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  434 (496)
Q Consensus       359 ~~~~~~~~~~~~h--~~~i~~l~~sp~~~~llas~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  434 (496)
                         ... ......  ...|..+.+||||..+.+..  ..++.|.|=-+.......   ..   .....+.........+.
T Consensus       100 ---~~~-~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~---~~---~l~~~~~~~~~~~~~v~  169 (253)
T PF10647_consen  100 ---GEP-VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGV---PR---RLTGPRRVAPPLLSDVT  169 (253)
T ss_pred             ---cee-EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCC---cc---eeccceEecccccCcce
Confidence               111 112211  12899999999999865444  235777777665432210   00   00011122223345789


Q ss_pred             eEEecCCCCcEEEEec
Q 010997          435 DFHWNASDPWTVVSVS  450 (496)
Q Consensus       435 ~~~~~p~~~~l~~s~s  450 (496)
                      +++|.+++..+++...
T Consensus       170 ~v~W~~~~~L~V~~~~  185 (253)
T PF10647_consen  170 DVAWSDDSTLVVLGRS  185 (253)
T ss_pred             eeeecCCCEEEEEeCC
Confidence            9999998775555433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.32  E-value=2.1  Score=38.72  Aligned_cols=168  Identities=14%  Similarity=0.154  Sum_probs=100.4

Q ss_pred             ecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCe
Q 010997          192 TGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR  271 (496)
Q Consensus       192 ~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (496)
                      .|-+.+ +.++.|+|+.+.|++......-.||=-..+......                                     
T Consensus        82 ~g~~~n-vS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-------------------------------------  123 (316)
T COG3204          82 LGETAN-VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-------------------------------------  123 (316)
T ss_pred             cccccc-ccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-------------------------------------
Confidence            344443 889999999998888776666666644333221111                                     


Q ss_pred             eeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc-----eeee--ccC-CCCeEEEEecCCCCcEEEEEc
Q 010997          272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVE--KAH-DADLHCVDWNPLDDNLILTGS  343 (496)
Q Consensus       272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~--~~~-~~~v~~i~~sp~~~~~l~sgs  343 (496)
                       .+.+ -.....+.+...+ .+.++--.++.+.++.+.......     ...+  ..+ +...-.++|+| ....|..+-
T Consensus       124 -PL~g-~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aK  199 (316)
T COG3204         124 -PLTG-FSDPETIEYIGGN-QFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAK  199 (316)
T ss_pred             -cccc-cCChhHeEEecCC-EEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEE
Confidence             0111 1234456666665 566666677777777666543100     0011  122 66788999999 566666666


Q ss_pred             CCCcEEEEeCCCCCCCCCCCCceEeccC-------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          344 ADNSVRMFDRRNLTSNGVGSPINKFEGH-------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       344 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      .-.=+.||-.....+.   -.++....+       -..|.++.|++....+|+-+.+++.+.-.|...
T Consensus       200 Er~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         200 ERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ccCCcEEEEEecCCcc---cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence            6666777766542110   111111111       235788999988777888888898888888775

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.28  E-value=0.77  Score=46.82  Aligned_cols=112  Identities=13%  Similarity=0.214  Sum_probs=65.5

Q ss_pred             CcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-cCCCCEEEEEEc--CCCCCEEEEEeCCCcEEEEECCCCCcccCCC
Q 010997          336 DNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWS--PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  412 (496)
Q Consensus       336 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~l~~s--p~~~~llas~~~dg~i~iwd~~~~~~~~~~~  412 (496)
                      +..-++-+....+.|||.+.      +....+-. ...+.|..+.|.  |+++.+||.| ....|.+|--.......   
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~------~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~dy~~---  110 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRS------GVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYDYTN---  110 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCC------cEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchhhhc---
Confidence            33333444455899999997      33222211 347789999986  6788777555 57788888653311110   


Q ss_pred             CCCCCCCCeeEEEecCCC-CCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          413 PRTTNYPAGLFFQHAGHR-DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       413 ~~~~~~~~~~~~~~~~h~-~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                       ......+........|+ .+|.+..|.++|..++++ +         +.+.|++-.
T Consensus       111 -~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-G---------Nqlfv~dk~  156 (631)
T PF12234_consen  111 -KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-G---------NQLFVFDKW  156 (631)
T ss_pred             -CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-C---------CEEEEECCC
Confidence             00011112222234455 589999999987654433 2         789998754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.27  E-value=2.8  Score=39.90  Aligned_cols=70  Identities=10%  Similarity=0.058  Sum_probs=33.6

Q ss_pred             EecCCCCcEEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEe
Q 010997          147 RELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS  224 (496)
Q Consensus       147 ~~~p~~~~~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd  224 (496)
                      +|.++..++|.++..||  .+++-|+.++.             ...|.........+..++|+++.|+-......|+--|
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~-------------i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vd  108 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE-------------ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVD  108 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-E-------------EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCE-------------EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEE
Confidence            34553345566665566  45666777662             1222222222345677788888766554456788888


Q ss_pred             cCCcc
Q 010997          225 IQDHI  229 (496)
Q Consensus       225 ~~~~~  229 (496)
                      +++.+
T Consensus       109 L~T~e  113 (386)
T PF14583_consen  109 LDTLE  113 (386)
T ss_dssp             TTT--
T ss_pred             CCcCc
Confidence            87654

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.04  E-value=3.5  Score=42.43  Aligned_cols=106  Identities=17%  Similarity=0.264  Sum_probs=55.9

Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEE---EEccCCCccc---eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEE
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLIL---WDARVGTSPV---IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  351 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~i---wd~~~~~~~~---~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iw  351 (496)
                      .+.|..+.|+|+|..+.+..  +|.|.+   -....+...+   ......-...+..+.|.+ ++.+ +++..++...+|
T Consensus       447 ~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L-~V~~~~~~~~v~  522 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT-GDSL-VVGRSDPEHPVW  522 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec-CCEE-EEEecCCCCceE
Confidence            45799999999995444433  467776   3322232111   011112333468899998 6664 455555555555


Q ss_pred             eCCCCCCCCCCCCceEecc--CCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997          352 DRRNLTSNGVGSPINKFEG--HSAAVLCVQWSPDKSSVFGSSAEDG  395 (496)
Q Consensus       352 d~~~~~~~~~~~~~~~~~~--h~~~i~~l~~sp~~~~llas~~~dg  395 (496)
                      -+.--     +.....+..  ...++..|+-++. . ++ ....++
T Consensus       523 ~v~vD-----G~~~~~~~~~n~~~~v~~vaa~~~-~-iy-v~~~~g  560 (591)
T PRK13616        523 YVNLD-----GSNSDALPSRNLSAPVVAVAASPS-T-VY-VTDARA  560 (591)
T ss_pred             EEecC-----CccccccCCCCccCceEEEecCCc-e-EE-EEcCCc
Confidence            54431     111111122  3567778887763 3 55 344455

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.86  E-value=0.11  Score=31.91  Aligned_cols=33  Identities=15%  Similarity=0.229  Sum_probs=27.8

Q ss_pred             CceeEEEEccCCC--ceEEEEcCCCeEEEEEccCC
Q 010997          279 DTVEDVTFCPSSA--QEFCSVGDDSCLILWDARVG  311 (496)
Q Consensus       279 ~~v~~l~~~~~~~--~~l~s~~~dg~i~iwd~~~~  311 (496)
                      +.|.++.|+|...  .+|+..-.-|.|.|+|+|+.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3688999998764  68888889999999999953

It contains a characteristic DLL sequence motif.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.73  E-value=3.1  Score=37.50  Aligned_cols=213  Identities=13%  Similarity=0.184  Sum_probs=114.6

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCc-EEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPD-VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ....-+..-..++|+|..+.-++.+-.-|+ ..++|............    .....+-||.       .|+|||.+|..
T Consensus        62 ~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s----~~~RHfyGHG-------vfs~dG~~LYA  130 (366)
T COG3490          62 FATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS----QEGRHFYGHG-------VFSPDGRLLYA  130 (366)
T ss_pred             eeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec----ccCceeeccc-------ccCCCCcEEEe
Confidence            334445555678888877777777766664 67889887632211110    1122344442       48999998887


Q ss_pred             ecC-----CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          214 GGK-----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       214 g~~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      .-.     -|.|-|||.+.+-                                       ..+..+..|.-..-.+.|.+
T Consensus       131 TEndfd~~rGViGvYd~r~~f---------------------------------------qrvgE~~t~GiGpHev~lm~  171 (366)
T COG3490         131 TENDFDPNRGVIGVYDAREGF---------------------------------------QRVGEFSTHGIGPHEVTLMA  171 (366)
T ss_pred             ecCCCCCCCceEEEEeccccc---------------------------------------ceecccccCCcCcceeEEec
Confidence            543     3788999987432                                       11234555666667788999


Q ss_pred             CCCceEEEEcC------------------CCeEEEEEccCCCccceeeec--cCCCCeEEEEecCCCCcEEEEEcCCCcE
Q 010997          289 SSAQEFCSVGD------------------DSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSV  348 (496)
Q Consensus       289 ~~~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs~dg~i  348 (496)
                      ||. .++.+..                  .-++.+.|..++......++.  .+.-.|..++..+ ++..++.+-..|--
T Consensus       172 DGr-tlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~  249 (366)
T COG3490         172 DGR-TLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPR  249 (366)
T ss_pred             CCc-EEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCC
Confidence            984 4444321                  112233333333311111111  2334566666666 55544433222210


Q ss_pred             ----EEE-eCCCCCCCCCCCCceEec-------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          349 ----RMF-DRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       349 ----~iw-d~~~~~~~~~~~~~~~~~-------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                          -+. -.+.      ++++.-+.       .....|-+|+.+-+...+.+|+=..+...+||..++
T Consensus       250 ~d~ppLvg~~~~------g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG  312 (366)
T COG3490         250 NDLPPLVGHFRK------GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG  312 (366)
T ss_pred             ccCCcceeeccC------CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence                000 0011      23333222       123567788888777766666666778889999985

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.64  E-value=3.1  Score=38.63  Aligned_cols=115  Identities=14%  Similarity=0.287  Sum_probs=59.3

Q ss_pred             ecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997          275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  354 (496)
Q Consensus       275 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~  354 (496)
                      ..-.+.+.++.-++++ .+++++.....+.-||--...  -..........|.+|.|+| ++.+.+++ ..|.|++=+..
T Consensus       141 ~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~  215 (302)
T PF14870_consen  141 SETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDP  215 (302)
T ss_dssp             -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-T
T ss_pred             cCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCcc--ceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCC
Confidence            3445678888889998 677777776666788754433  1222234568899999999 77776655 88888887722


Q ss_pred             CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 010997          355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLL  397 (496)
Q Consensus       355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i  397 (496)
                      ..... -.+++..+..-...+..++|.+++. ++|+|+ .|.+
T Consensus       216 ~~~~~-w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l  255 (302)
T PF14870_consen  216 DDGET-WSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL  255 (302)
T ss_dssp             TEEEE-E---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E
T ss_pred             CCccc-cccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE
Confidence            10000 0011111222334589999999877 776666 5544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.56  E-value=0.067  Score=54.93  Aligned_cols=125  Identities=22%  Similarity=0.317  Sum_probs=80.4

Q ss_pred             eeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc-----cceeeeccCCCCeEEEEecCC--CCcEEEEEcCC
Q 010997          273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPL--DDNLILTGSAD  345 (496)
Q Consensus       273 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~d  345 (496)
                      .+++..+.|-+++|.....-.+.  -.-|.+.+||+..-+.     ..++....-...+.-|.|.|.  +.-++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            45677788888888432211122  3447789998864321     112223334456677777764  45677788888


Q ss_pred             CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEE-----------EcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ-----------WSPDKSSVFGSSAEDGLLNIWDYEKVGK  407 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~-----------~sp~~~~llas~~~dg~i~iwd~~~~~~  407 (496)
                      +.|++..+..       .....+.+|...++.++           .||||. +||.++.||.+++|.+.-.++
T Consensus       205 ~~i~lL~~~r-------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~  269 (1283)
T KOG1916|consen  205 GEIRLLNINR-------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK  269 (1283)
T ss_pred             CceeEeeech-------HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence            9999888775       22344556766555543           589998 678999999999998866544

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.53  E-value=2.2  Score=39.68  Aligned_cols=157  Identities=12%  Similarity=0.146  Sum_probs=74.9

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      .-.+.++.+..++ ++.++|+++.-....-||-...             .-..........|..|.|.|++.+.+.+ +.
T Consensus       142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~-------------~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G  206 (302)
T PF14870_consen  142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQT-------------TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG  206 (302)
T ss_dssp             S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-S-------------S-EEEE--SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred             CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCc-------------cceEEccCccceehhceecCCCCEEEEe-CC
Confidence            3447788888888 8888888766545567775432             0111122223368999999998765544 78


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      |.|+.=+..........                                   ++..+....-.+.+++|.+++ ..+++|
T Consensus       207 g~~~~s~~~~~~~~w~~-----------------------------------~~~~~~~~~~~~ld~a~~~~~-~~wa~g  250 (302)
T PF14870_consen  207 GQIQFSDDPDDGETWSE-----------------------------------PIIPIKTNGYGILDLAYRPPN-EIWAVG  250 (302)
T ss_dssp             TEEEEEE-TTEEEEE--------------------------------------B-TTSS--S-EEEEEESSSS--EEEEE
T ss_pred             cEEEEccCCCCcccccc-----------------------------------ccCCcccCceeeEEEEecCCC-CEEEEe
Confidence            88888772211110000                                   000011122357899999886 566655


Q ss_pred             cCCCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEE
Q 010997          298 GDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMF  351 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iw  351 (496)
                      +. |.+. .....++  .-...   ..-...++.|.|.+ ...-++.| .+|.|.-|
T Consensus       251 g~-G~l~-~S~DgGk--tW~~~~~~~~~~~n~~~i~f~~-~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  251 GS-GTLL-VSTDGGK--TWQKDRVGENVPSNLYRIVFVN-PDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             ST-T-EE-EESSTTS--S-EE-GGGTTSSS---EEEEEE-TTEEEEE--STTEEEEE
T ss_pred             CC-ccEE-EeCCCCc--cceECccccCCCCceEEEEEcC-CCceEEEC-CCcEEEEe
Confidence            54 4333 3444444  12211   12345688899976 55666665 67766544

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.52  E-value=0.51  Score=50.16  Aligned_cols=150  Identities=15%  Similarity=0.133  Sum_probs=90.4

Q ss_pred             ceeEEEEccCCCc-eEEEEcCCCeEEEEEccCCCccc---eeee------ccCCCCeEEEEecCCCCcEEEEEcCCCcEE
Q 010997          280 TVEDVTFCPSSAQ-EFCSVGDDSCLILWDARVGTSPV---IKVE------KAHDADLHCVDWNPLDDNLILTGSADNSVR  349 (496)
Q Consensus       280 ~v~~l~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~---~~~~------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~  349 (496)
                      ++..+...+++.. .++..+.+-.|..||++.-....   ...+      .....-..++.|+|.=....|....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            4555556666421 23334455578999998643111   1111      112334568899995556678888899999


Q ss_pred             EEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997          350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  429 (496)
Q Consensus       350 iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h  429 (496)
                      +.-+....     ..+.++. .....++++|+|.|..+ +.|-..|.+.-|...-.-+...      ..|+  ..    -
T Consensus       182 V~~~~~~~-----~~v~s~p-~t~~~Tav~WSprGKQl-~iG~nnGt~vQy~P~leik~~i------p~Pp--~~----e  242 (1405)
T KOG3630|consen  182 VKSTKQLA-----QNVTSFP-VTNSQTAVLWSPRGKQL-FIGRNNGTEVQYEPSLEIKSEI------PEPP--VE----E  242 (1405)
T ss_pred             hhhhhhhh-----hhhcccC-cccceeeEEecccccee-eEecCCCeEEEeecccceeecc------cCCC--cC----C
Confidence            98777532     2233332 45678999999999975 5888899998887554211000      0111  10    1


Q ss_pred             CCCcceEEecCCCCcEEEE
Q 010997          430 RDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       430 ~~~V~~~~~~p~~~~l~~s  448 (496)
                      ...|.+|+|-....++++-
T Consensus       243 ~yrvl~v~Wl~t~eflvvy  261 (1405)
T KOG3630|consen  243 NYRVLSVTWLSTQEFLVVY  261 (1405)
T ss_pred             CcceeEEEEecceeEEEEe
Confidence            3578999998776665543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.47  E-value=0.95  Score=46.19  Aligned_cols=121  Identities=17%  Similarity=0.241  Sum_probs=74.7

Q ss_pred             CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCC-
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNL-  356 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~-  356 (496)
                      ..+.-+.-+.-+ ...+.-+....+.|||.+.+.......+ ...+.|..+.|... +++.+++.+-...|.+|--... 
T Consensus        30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            344445555544 3444444556899999988762222222 45788999999531 6777777778888888854211 


Q ss_pred             --CCCCCCCCceEe--ccCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          357 --TSNGVGSPINKF--EGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       357 --~~~~~~~~~~~~--~~h~-~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                        ...+...++..+  ..|+ .+|.+..|.++|. ++ .|+ ++.+.|+|-.-
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~~  157 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKWL  157 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCCc
Confidence              112223444444  3444 6899999999997 33 443 45788887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.14  E-value=3.6  Score=35.92  Aligned_cols=141  Identities=13%  Similarity=0.173  Sum_probs=80.8

Q ss_pred             CCCeEEEEecCCCCcEEEEEcCC---------CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC
Q 010997          323 DADLHCVDWNPLDDNLILTGSAD---------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE  393 (496)
Q Consensus       323 ~~~v~~i~~sp~~~~~l~sgs~d---------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~  393 (496)
                      ....+.-..+| ++++++---.|         |.++.|-..        ..+..+...-.--+.++|+.+...+...-+.
T Consensus       108 knR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~--------h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsl  178 (310)
T KOG4499|consen  108 KNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAG--------HQVELIWNCVGISNGLAWDSDAKKFYYIDSL  178 (310)
T ss_pred             hcccccCccCC-CCceeeeeeccccccccccccEEEEeccC--------CCceeeehhccCCccccccccCcEEEEEccC
Confidence            34566677789 88884432222         223333221        1222222222334678999888877777788


Q ss_pred             CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC---CC-CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          394 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH---RD-KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       394 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~-~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      +-.|.-||..-..-..        ..+..++.+...   .. .--.++...+|...+++-+        .++|...|+. 
T Consensus       179 n~~V~a~dyd~~tG~~--------snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n--------g~~V~~~dp~-  241 (310)
T KOG4499|consen  179 NYEVDAYDYDCPTGDL--------SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN--------GGTVQKVDPT-  241 (310)
T ss_pred             ceEEeeeecCCCcccc--------cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec--------CcEEEEECCC-
Confidence            8888888844321111        112333333321   11 1223444555554444333        2789999998 


Q ss_pred             CCcCCchHHHHHHHhccceEEEecc
Q 010997          470 LIYRPQDEVLAELEKFKAHVISCTS  494 (496)
Q Consensus       470 ~~~~~~~~~~~~l~~h~~~v~~~~~  494 (496)
                           +++.+.++.-....|++++|
T Consensus       242 -----tGK~L~eiklPt~qitsccF  261 (310)
T KOG4499|consen  242 -----TGKILLEIKLPTPQITSCCF  261 (310)
T ss_pred             -----CCcEEEEEEcCCCceEEEEe
Confidence                 89999999988999999998

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.11  E-value=5.3  Score=42.05  Aligned_cols=95  Identities=16%  Similarity=0.114  Sum_probs=57.2

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC--CCccccCCCCCCCCce------EEecCCCCcceeee
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ--PNRHAVLGATNSRPDL------ILTGHQDNAEFALA  203 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~------~l~~h~~~~v~~l~  203 (496)
                      +......-.-+|..|..+| ++.+||..|..| |.|-.+...  .......+.....+..      .+..+....|..+.
T Consensus        76 ~L~~~~~~~f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~  153 (717)
T PF10168_consen   76 KLLPSNPPLFEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVR  153 (717)
T ss_pred             eeecCCCCceeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEE
Confidence            3333344456899999999 889999888865 444444321  1110001111111110      12223333688999


Q ss_pred             ecCC---CCceEEecCCCcEEEEecCCc
Q 010997          204 MCPT---EPYVLSGGKDKSVVLWSIQDH  228 (496)
Q Consensus       204 ~~p~---~~~l~sg~~Dg~i~iwd~~~~  228 (496)
                      |+|.   +..|+.=..|+++|+||+...
T Consensus       154 WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  154 WHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            9997   468888888999999999754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10115 protease 2; Provisional

Probab=93.99  E-value=9.7  Score=40.27  Aligned_cols=74  Identities=9%  Similarity=-0.009  Sum_probs=40.0

Q ss_pred             eEEEEccCCCceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC---CCcEEEEeC
Q 010997          282 EDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---DNSVRMFDR  353 (496)
Q Consensus       282 ~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~---dg~i~iwd~  353 (496)
                      ..++|.+++..++++...+     ..|..+++.++.......+........-..+.+.++.+++..+.   ++.+.+++.
T Consensus       175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            4589999985555554432     36777888777322233333333333322232325555544433   357889986


Q ss_pred             CC
Q 010997          354 RN  355 (496)
Q Consensus       354 ~~  355 (496)
                      ..
T Consensus       255 ~~  256 (686)
T PRK10115        255 EL  256 (686)
T ss_pred             cC
Confidence            44

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=93.89  E-value=2.2  Score=44.19  Aligned_cols=175  Identities=11%  Similarity=0.096  Sum_probs=96.0

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccc------cCCC--CCCCCceEE----ecCCCCcceeeeecC--CCCceEEecCCC
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHA------VLGA--TNSRPDLIL----TGHQDNAEFALAMCP--TEPYVLSGGKDK  218 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~------~~~~--~~~~~~~~l----~~h~~~~v~~l~~~p--~~~~l~sg~~Dg  218 (496)
                      .++++.+. .+.|.||++........      ....  .........    ..|+   |+-|....  ....|+.|..||
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHt---IN~i~v~~lg~~EVLl~c~DdG  124 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHT---INFIKVGDLGGEEVLLLCTDDG  124 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCce---eeEEEecccCCeeEEEEEecCC
Confidence            45666655 56999999876543211      0000  000000000    1222   44444332  344788999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc--cCCCceEEE
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC--PSSAQEFCS  296 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~~~~l~s  296 (496)
                      .|.+|.+++-...........                ...    .......|...+. -...+++++++  ... +++|+
T Consensus       125 ~V~~Yyt~~I~~~i~~~~~~~----------------~~~----~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-rlIAV  182 (717)
T PF08728_consen  125 DVLAYYTETIIEAIERFSEDN----------------DSG----FSRLKIKPFFHLR-VGASAWGLDIHDYKKS-RLIAV  182 (717)
T ss_pred             eEEEEEHHHHHHHHHhhcccc----------------ccc----cccccCCCCeEee-cCCceeEEEEEecCcc-eEEEE
Confidence            999998764211100000000                000    0001223333333 23478999998  665 78888


Q ss_pred             EcCCCeEEEEEccCCCcc-ceeeeccCCCCeEEEEecCCC--Cc---EEEEEcCCCcEEEEeC
Q 010997          297 VGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLD--DN---LILTGSADNSVRMFDR  353 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~i~~sp~~--~~---~l~sgs~dg~i~iwd~  353 (496)
                      ++....|.||-....... .......+..-|.+|+|-+.+  +.   .|++++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888888866553211 111122466789999997732  22   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA02790 Kelch-like protein; Provisional

Probab=93.83  E-value=2.4  Score=42.68  Aligned_cols=100  Identities=7%  Similarity=-0.038  Sum_probs=50.0

Q ss_pred             ceEEEEcCCC---eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          292 QEFCSVGDDS---CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       292 ~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      .+.+.||.++   .+..||.++..................+++   ++.+.+.|+   .+.+||..+..    +..+..+
T Consensus       364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~---~~~IYv~GG---~~e~ydp~~~~----W~~~~~m  433 (480)
T PHA02790        364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF---GRRLFLVGR---NAEFYCESSNT----WTLIDDP  433 (480)
T ss_pred             EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE---CCEEEEECC---ceEEecCCCCc----EeEcCCC
Confidence            6777777553   477888877653221111111111122232   566777774   57788887632    3333333


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  404 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~  404 (496)
                      .........+.+  ++. |++.||.+     ..|..||..+
T Consensus       434 ~~~r~~~~~~v~--~~~-IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        434 IYPRDNPELIIV--DNK-LLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             CCCccccEEEEE--CCE-EEEECCcCCCcccceEEEEECCC
Confidence            222222222222  344 78888754     3466666654

>PHA03098 kelch-like protein; Provisional

Probab=93.52  E-value=2.9  Score=42.79  Aligned_cols=103  Identities=10%  Similarity=0.050  Sum_probs=50.4

Q ss_pred             ceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC------CcEEEEeCCCCCCCC
Q 010997          292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRNLTSNG  360 (496)
Q Consensus       292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d------g~i~iwd~~~~~~~~  360 (496)
                      .+++.||.+     ..+..||..+.+........ +...-.+++..  ++.+++.|+.+      ..+..||+.+..   
T Consensus       344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp-~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~---  417 (534)
T PHA03098        344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLI-FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNK---  417 (534)
T ss_pred             EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC-cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCe---
Confidence            677777765     35778888776532211111 11111122222  56777777742      357888987632   


Q ss_pred             CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--------cEEEEECCC
Q 010997          361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--------LLNIWDYEK  404 (496)
Q Consensus       361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--------~i~iwd~~~  404 (496)
                       +..+..+....... +++. -++ .|++.||.++        .+.+||..+
T Consensus       418 -W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        418 -WSKGSPLPISHYGG-CAIY-HDG-KIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             -eeecCCCCccccCc-eEEE-ECC-EEEEECCccCCCCCcccceEEEecCCC
Confidence             22222221111111 1222 233 3677776532        277888765

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=93.40  E-value=6.3  Score=36.19  Aligned_cols=117  Identities=5%  Similarity=0.061  Sum_probs=68.6

Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcccee------------eeccCCCCeEEEE-ecCCCCcEEEEEcCCC
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK------------VEKAHDADLHCVD-WNPLDDNLILTGSADN  346 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~~v~~i~-~sp~~~~~l~sgs~dg  346 (496)
                      .|..+...++- +.+++-+ |+.+.++++..-......            ........+..++ -....+...+......
T Consensus        37 ~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk  114 (275)
T PF00780_consen   37 SITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK  114 (275)
T ss_pred             eEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence            49999998877 4454444 499999999765422110            0112234455555 1122344444444555


Q ss_pred             cEEEEeCCCCCCCCCC-CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          347 SVRMFDRRNLTSNGVG-SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      .|.+|........  . ..+.++. -...+.+++|.++   .++.|. .+...+.|+.+.
T Consensus       115 ~i~i~~~~~~~~~--f~~~~ke~~-lp~~~~~i~~~~~---~i~v~~-~~~f~~idl~~~  167 (275)
T PF00780_consen  115 KILIYEWNDPRNS--FSKLLKEIS-LPDPPSSIAFLGN---KICVGT-SKGFYLIDLNTG  167 (275)
T ss_pred             EEEEEEEECCccc--ccceeEEEE-cCCCcEEEEEeCC---EEEEEe-CCceEEEecCCC
Confidence            8999988763110  2 3455554 3577899999844   344565 445888999863

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.04  E-value=1.1  Score=40.26  Aligned_cols=102  Identities=16%  Similarity=0.237  Sum_probs=68.6

Q ss_pred             eeEEEEccCCCceEEEEcCCCe-EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCC
Q 010997          281 VEDVTFCPSSAQEFCSVGDDSC-LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRR  354 (496)
Q Consensus       281 v~~l~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~  354 (496)
                      .-+|.|+|..+.-++.+-.-|+ ..++|....+.+..........-.-.=.||| ++.+|...-.|     |.|-|||.+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence            3456777776555555555554 5678888777544333222222222346899 88888765443     789999999


Q ss_pred             CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEE
Q 010997          355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF  388 (496)
Q Consensus       355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~ll  388 (496)
                      ..     ...+-++..|.-....+.|.+||+.++
T Consensus       149 ~~-----fqrvgE~~t~GiGpHev~lm~DGrtlv  177 (366)
T COG3490         149 EG-----FQRVGEFSTHGIGPHEVTLMADGRTLV  177 (366)
T ss_pred             cc-----cceecccccCCcCcceeEEecCCcEEE
Confidence            62     366778888888889999999999644

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.91  E-value=0.017  Score=55.13  Aligned_cols=143  Identities=8%  Similarity=0.096  Sum_probs=98.9

Q ss_pred             eeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCc
Q 010997          201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT  280 (496)
Q Consensus       201 ~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  280 (496)
                      ...|.|.+.-++.++.+..|..||-......                                          -....+.
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~l------------------------------------------e~n~tg~   76 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAGQVIL------------------------------------------ELNPTGK   76 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhcceec------------------------------------------ccCCchh
Confidence            5678887776888888888888885432110                                          0012345


Q ss_pred             eeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997          281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  360 (496)
Q Consensus       281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~  360 (496)
                      ..+++|..+++..++.+-..+.+.+||+.+.....+..  +....-.-+.|++ ....++.|...|.+.|++.+.     
T Consensus        77 aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~--gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgt-----  148 (615)
T KOG2247|consen   77 ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES--GGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGT-----  148 (615)
T ss_pred             HhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc--cCcchHHHHhhcc-CCccccccccccceEEEeccc-----
Confidence            66788888887777888889999999998765221211  2222222278998 788889999999999999887     


Q ss_pred             CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCc
Q 010997          361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGL  396 (496)
Q Consensus       361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~  396 (496)
                       .+.+.....|...+++++|.+.+..  +.++.|..
T Consensus       149 -sR~iiv~Gkh~RRgtq~av~lEd~v--il~dcd~~  181 (615)
T KOG2247|consen  149 -SRRIIVMGKHQRRGTQIAVTLEDYV--ILCDCDNT  181 (615)
T ss_pred             -hhhhhhhcccccceeEEEeccccee--eecCcHHH
Confidence             4455555558899999999998763  34554433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.88  E-value=14  Score=38.93  Aligned_cols=38  Identities=18%  Similarity=0.263  Sum_probs=30.8

Q ss_pred             cCCCceeEEEEccCC--CceEEEEcCCCeEEEEEccCCCc
Q 010997          276 GHEDTVEDVTFCPSS--AQEFCSVGDDSCLILWDARVGTS  313 (496)
Q Consensus       276 ~h~~~v~~l~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~  313 (496)
                      .+...|..+.|||.+  +..|+.-..|+++++||+.....
T Consensus       144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence            345689999999974  36788888999999999986553

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.87  E-value=2  Score=42.72  Aligned_cols=129  Identities=12%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             EEecCCCceeEEEecCC----CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC----cceeeeecC
Q 010997          135 KTIIHPGEVNRIRELPQ----NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN----AEFALAMCP  206 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~----~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~----~v~~l~~~p  206 (496)
                      +.++.-..|..+.|.|.    .+.+||.-. ...|.||.+.......       .+....-..+-..    --.++.|+|
T Consensus        51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQH-kkhVtVWqL~~s~~e~-------~K~l~sQtcEi~e~~pvLpQGCVWHP  122 (671)
T PF15390_consen   51 KVIGQFEHVHGLSWAPPCTADTPALLAVQH-KKHVTVWQLCPSTTER-------NKLLMSQTCEIREPFPVLPQGCVWHP  122 (671)
T ss_pred             cEeeccceeeeeeecCcccCCCCceEEEec-cceEEEEEeccCcccc-------ccceeeeeeeccCCcccCCCcccccC
Confidence            34555666999999983    345666654 5699999987442111       1222211111111    113567999


Q ss_pred             CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997          207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       207 ~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  286 (496)
                      ....|+.-.....-.+.++......                                       +..--...+.|.|.+|
T Consensus       123 k~~iL~VLT~~dvSV~~sV~~d~sr---------------------------------------VkaDi~~~G~IhCACW  163 (671)
T PF15390_consen  123 KKAILTVLTARDVSVLPSVHCDSSR---------------------------------------VKADIKTSGLIHCACW  163 (671)
T ss_pred             CCceEEEEecCceeEeeeeeeCCce---------------------------------------EEEeccCCceEEEEEe
Confidence            9887665544433345555432111                                       1111134578999999


Q ss_pred             ccCCCceEEEEcCCCeEEEEEccC
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARV  310 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~  310 (496)
                      .+||.+++++.+..=.-++||-..
T Consensus       164 T~DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  164 TKDGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             cCcCCEEEEEeCCeEEEEEecCch
Confidence            999976666666655667888543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.54  E-value=5.4  Score=38.56  Aligned_cols=109  Identities=11%  Similarity=0.157  Sum_probs=57.4

Q ss_pred             CceeEEEEccCCCceEEEEc-----------CCC-eEEEEEccCCC--ccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997          279 DTVEDVTFCPSSAQEFCSVG-----------DDS-CLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~~--~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~  344 (496)
                      .....|+|.++| +++++-.           ..+ .|.+++-..+.  ......+.......+.+++.+ ++ +++ ++.
T Consensus        14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~   89 (367)
T TIGR02604        14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATP   89 (367)
T ss_pred             CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCC
Confidence            456788999998 5655542           223 77777654332  112233333344568899988 66 444 444


Q ss_pred             CCcEEEEeCCCCCCCC-CCCCc-eEecc----CCCCEEEEEEcCCCCCEEEEEe
Q 010997          345 DNSVRMFDRRNLTSNG-VGSPI-NKFEG----HSAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~-~~~~~-~~~~~----h~~~i~~l~~sp~~~~llas~~  392 (496)
                      ....++.|........ ..+.+ ..+..    +......++|.|+|. |+++-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G  142 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG  142 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence            4433444543211000 01111 22322    234577999999997 555444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.38  E-value=6.6  Score=37.94  Aligned_cols=107  Identities=12%  Similarity=0.147  Sum_probs=52.9

Q ss_pred             eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC-----Cccce-eeecc----CCCCeEEEEecCCCCcEEEEEc
Q 010997          274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-----TSPVI-KVEKA----HDADLHCVDWNPLDDNLILTGS  343 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~-~~~~~----~~~~v~~i~~sp~~~~~l~sgs  343 (496)
                      +.........+++.+++  ++++ +.....++.|....     +...+ ..+..    +....+.++|.| ++.+.++-+
T Consensus        67 fa~~l~~p~Gi~~~~~G--lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G  142 (367)
T TIGR02604        67 FAEELSMVTGLAVAVGG--VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHG  142 (367)
T ss_pred             eecCCCCccceeEecCC--EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecc
Confidence            33334456788888876  4444 34433334454321     11111 11211    234578899999 777655544


Q ss_pred             CC-------------------CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997          344 AD-------------------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       344 ~d-------------------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~  392 (496)
                      ..                   |.|.-+|...       ..+..+...-.....++|+|+|. ++++-.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg-------~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn  202 (367)
T TIGR02604       143 NTLASKVTRPGTSDESRQGLGGGLFRYNPDG-------GKLRVVAHGFQNPYGHSVDSWGD-VFFCDN  202 (367)
T ss_pred             cCCCceeccCCCccCcccccCceEEEEecCC-------CeEEEEecCcCCCccceECCCCC-EEEEcc
Confidence            21                   2333344332       12222221122346899999987 564443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=92.35  E-value=2.9  Score=43.31  Aligned_cols=128  Identities=12%  Similarity=0.131  Sum_probs=80.7

Q ss_pred             ceeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCc--------cccCCCCCCCCceEEecCCCCcceeeeec--CCCCc
Q 010997          142 EVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQPNR--------HAVLGATNSRPDLILTGHQDNAEFALAMC--PTEPY  210 (496)
Q Consensus       142 ~V~~l~~~p-~~~~~lat~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~~l~~h~~~~v~~l~~~--p~~~~  210 (496)
                      .|+.|.... .+..+|+.|.+||.|.+|.++.-...        .........+|...+.-..  ..++|+++  ...++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~--SaWGLdIh~~~~~rl  179 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGA--SAWGLDIHDYKKSRL  179 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCC--ceeEEEEEecCcceE
Confidence            466666544 36679999999999999976432100        0000001234555555444  46999998  77788


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      ||.++....|.||-..........                                     ..-..|...|.+|+|.++.
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~-------------------------------------~~s~~~~hNIP~VSFl~~~  222 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYH-------------------------------------VPSHQHSHNIPNVSFLDDD  222 (717)
T ss_pred             EEEecCCceEEEEEEecccccccc-------------------------------------ccccccccCCCeeEeecCC
Confidence            998888888999876532100000                                     0001256678899997654


Q ss_pred             --Cc---eEEEEcCCCeEEEEEc
Q 010997          291 --AQ---EFCSVGDDSCLILWDA  308 (496)
Q Consensus       291 --~~---~l~s~~~dg~i~iwd~  308 (496)
                        +.   .+++++-.|.+.+|++
T Consensus       223 ~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  223 LDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             CCCccceEEEEEeccCcEEEEEE
Confidence              22   6778889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.89  E-value=9.7  Score=34.65  Aligned_cols=141  Identities=16%  Similarity=0.057  Sum_probs=90.9

Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  357 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~  357 (496)
                      .+-+.++.++.   .+...+..+.-++|.|+.+...|....+..-.+--.++..   .+++...+..|.-+.+.|+..++
T Consensus        86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdps  159 (370)
T COG5276          86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC
Confidence            45577888874   4566666778899999999987766554444444555555   57888888877778899999865


Q ss_pred             CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE
Q 010997          358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  437 (496)
Q Consensus       358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  437 (496)
                      +   ......+......-..++.|-+-  -+ .+..|+-+.|-|+...            ..+.++. +......+.++.
T Consensus       160 s---P~lagrya~~~~d~~~v~ISGn~--AY-vA~~d~GL~ivDVSnp------------~sPvli~-~~n~g~g~~sv~  220 (370)
T COG5276         160 S---PQLAGRYALPGGDTHDVAISGNY--AY-VAWRDGGLTIVDVSNP------------HSPVLIG-SYNTGPGTYSVS  220 (370)
T ss_pred             C---ceeeeeeccCCCCceeEEEecCe--EE-EEEeCCCeEEEEccCC------------CCCeEEE-EEecCCceEEEE
Confidence            3   23333444444445677777553  33 4556888999999885            2223332 222333677777


Q ss_pred             ecCCCC
Q 010997          438 WNASDP  443 (496)
Q Consensus       438 ~~p~~~  443 (496)
                      .+++.-
T Consensus       221 vsdnr~  226 (370)
T COG5276         221 VSDNRA  226 (370)
T ss_pred             ecCCee
Confidence            776443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=91.53  E-value=12  Score=35.08  Aligned_cols=106  Identities=13%  Similarity=0.145  Sum_probs=60.2

Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeecc----------CCCCeEEEEecCCCCcEEEEEc--CC-----C--cEEEEeC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILTGS--AD-----N--SVRMFDR  353 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~i~~sp~~~~~l~sgs--~d-----g--~i~iwd~  353 (496)
                      .++-.+.+|.|+--|+.............          ..+.-.-+++++..+.+++...  .+     +  .|-++|+
T Consensus       197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~  276 (342)
T PF06433_consen  197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL  276 (342)
T ss_dssp             EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred             eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence            34445666777777766554111111110          0123345677763444443322  12     1  4777788


Q ss_pred             CCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEE-EEeCCCcEEEEECCCC
Q 010997          354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG-SSAEDGLLNIWDYEKV  405 (496)
Q Consensus       354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~lla-s~~~dg~i~iwd~~~~  405 (496)
                      .+      ++.+..+.. ..++.+|+.+.+..-+|. ....++.+.+||..++
T Consensus       277 ~t------~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  277 KT------HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             TT------TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             CC------CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            87      778887763 346779999988765554 4456899999999985

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=91.28  E-value=3.9  Score=39.97  Aligned_cols=130  Identities=13%  Similarity=0.132  Sum_probs=78.4

Q ss_pred             CCCCCcCCeeeeecCCCceeEEEEccCCC------ceEEEEcCCCeEEEEEccCCCccceee-e--ccCCCCeEEEEecC
Q 010997          263 ADGPSVGPRGIYNGHEDTVEDVTFCPSSA------QEFCSVGDDSCLILWDARVGTSPVIKV-E--KAHDADLHCVDWNP  333 (496)
Q Consensus       263 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~-~--~~~~~~v~~i~~sp  333 (496)
                      .+...++.+..+.-|...  -+.|.|...      ..-+.|-.+..|.-.|.|......... .  ........|..-. 
T Consensus       495 mDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tT-  571 (776)
T COG5167         495 MDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTT-  571 (776)
T ss_pred             eecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccccccccccccc-
Confidence            344445555555555543  466766531      112344455566666777544211111 0  0111223333322 


Q ss_pred             CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       334 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                       ...++|+|+..|-|++||.-.      ...-..+.+....|..+..+.+|.++||||  ...+.+-|++-
T Consensus       572 -esGyIa~as~kGDirLyDRig------~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i  633 (776)
T COG5167         572 -ESGYIAAASRKGDIRLYDRIG------KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI  633 (776)
T ss_pred             -cCceEEEecCCCceeeehhhc------chhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence             467999999999999999664      233344566778899999999999998777  46788888864

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.10  E-value=5.1  Score=35.03  Aligned_cols=107  Identities=9%  Similarity=0.119  Sum_probs=70.7

Q ss_pred             CceeEEEEccCCCceEEEEcCCCeEEEEE--ccCCCc---cceeeecc----CCCCeEEEEecCCCCcEEEEEcCCCcEE
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDDSCLILWD--ARVGTS---PVIKVEKA----HDADLHCVDWNPLDDNLILTGSADNSVR  349 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd--~~~~~~---~~~~~~~~----~~~~v~~i~~sp~~~~~l~sgs~dg~i~  349 (496)
                      +--+.++|+.+...+.++-+.+-+|.-||  ..++..   ..+..++.    ..-..-.++... ++++.++.-..|+|.
T Consensus       158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQ  236 (310)
T ss_pred             cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEE
Confidence            33467889877766777778888887787  444331   01111111    011122344455 788888888889999


Q ss_pred             EEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC-CCEEEEEe
Q 010997          350 MFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK-SSVFGSSA  392 (496)
Q Consensus       350 iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~llas~~  392 (496)
                      .+|..+      ++.+.++.-....|++++|--.+ ..+++|+.
T Consensus       237 ~~dp~t------GK~L~eiklPt~qitsccFgGkn~d~~yvT~a  274 (310)
T KOG4499|consen  237 KVDPTT------GKILLEIKLPTPQITSCCFGGKNLDILYVTTA  274 (310)
T ss_pred             EECCCC------CcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence            999999      89999999889999999997542 32444444

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.85  E-value=17  Score=35.54  Aligned_cols=163  Identities=12%  Similarity=0.115  Sum_probs=91.3

Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC---C-CCceEEecCCCcEEEEec
Q 010997          150 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---T-EPYVLSGGKDKSVVLWSI  225 (496)
Q Consensus       150 p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p---~-~~~l~sg~~Dg~i~iwd~  225 (496)
                      +++...|+.|+..|.++||+.......         .....++.....+|..+..-.   . ....++.-.-+.+.||.+
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~---------~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v  104 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQ---------PEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSV  104 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCC---------CccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEE
Confidence            345678999999999999998554211         112344444455777776532   1 222223344566777776


Q ss_pred             CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC--CceeEEEEccCC----CceEEEEcC
Q 010997          226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE--DTVEDVTFCPSS----AQEFCSVGD  299 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~----~~~l~s~~~  299 (496)
                      ........                               ....-.+..+..|.  .....+++-|.|    ..+++.=+.
T Consensus       105 ~~~~g~~~-------------------------------~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~  153 (418)
T PF14727_consen  105 SLVDGTVE-------------------------------HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSM  153 (418)
T ss_pred             EecCCCcc-------------------------------cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEec
Confidence            32110000                               00000112222222  233344444433    367888899


Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                      ||.+.+|+-+...  ....+ ..---.-.+++.+ .-+.|++++.+..|.-|....+
T Consensus       154 DG~L~~feqe~~~--f~~~l-p~~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky~~L  206 (418)
T PF14727_consen  154 DGSLSFFEQESFA--FSRFL-PDFLLPGPLCYCP-RTDSFVTASSSWTLECYKYQDL  206 (418)
T ss_pred             CceEEEEeCCcEE--EEEEc-CCCCCCcCeEEee-cCCEEEEecCceeEEEecHHHh
Confidence            9999999976543  12222 2233334567888 7788999999999999976543

>PHA02790 Kelch-like protein; Provisional

Probab=90.77  E-value=16  Score=36.77  Aligned_cols=100  Identities=4%  Similarity=-0.068  Sum_probs=49.2

Q ss_pred             ceEEEEcCC--CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCCCce
Q 010997          292 QEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPIN  366 (496)
Q Consensus       292 ~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~  366 (496)
                      .+.+.||.+  ..+..||..+.+......+.........++.   ++.+.+.|+.++   .+..||.++..    +..+.
T Consensus       320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~----W~~~~  392 (480)
T PHA02790        320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQ----WQFGP  392 (480)
T ss_pred             EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCE----EEeCC
Confidence            677777754  3578888766542111111111111222222   577888887654   46778877522    22222


Q ss_pred             EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      .+.........+.+  ++. |++.|+   .+.+||..+
T Consensus       393 ~m~~~r~~~~~~~~--~~~-IYv~GG---~~e~ydp~~  424 (480)
T PHA02790        393 STYYPHYKSCALVF--GRR-LFLVGR---NAEFYCESS  424 (480)
T ss_pred             CCCCccccceEEEE--CCE-EEEECC---ceEEecCCC
Confidence            22111111122222  343 776764   467788765

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.27  E-value=7.3  Score=38.16  Aligned_cols=139  Identities=19%  Similarity=0.206  Sum_probs=83.6

Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-------CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-------DDNLILTGSADNSVRMFDRRNLTSNGVGSPI  365 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-------~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  365 (496)
                      ++..|+.-..++-.|+.-++  ++.....|..-  -+.|.|.       ..+. ++|-++..|.-.|.|-.     +..+
T Consensus       482 i~~dg~~~~kLykmDIErGk--vveeW~~~ddv--vVqy~p~~kf~qmt~eqt-lvGlS~~svFrIDPR~~-----gNKi  551 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGK--VVEEWDLKDDV--VVQYNPYFKFQQMTDEQT-LVGLSDYSVFRIDPRAR-----GNKI  551 (776)
T ss_pred             EEecCCCcccceeeecccce--eeeEeecCCcc--eeecCCchhHHhcCccce-EEeecccceEEeccccc-----CCce
Confidence            34455666677777777777  55555555443  5777773       1233 34555666666777752     2122


Q ss_pred             eEeccCCCCE-----EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          366 NKFEGHSAAV-----LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       366 ~~~~~h~~~i-----~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                      .... ....+     .+..-..+|  .+|.|+.-|-|++||--...               ....+.+-...|..+..+.
T Consensus       552 ~v~e-sKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~r---------------AKtalP~lG~aIk~idvta  613 (776)
T COG5167         552 KVVE-SKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKR---------------AKTALPGLGDAIKHIDVTA  613 (776)
T ss_pred             eeee-ehhccccccccccccccCc--eEEEecCCCceeeehhhcch---------------hhhcCcccccceeeeEeec
Confidence            2111 12222     233333344  36799999999999954321               1112345567888999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          441 SDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       441 ~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +|.+++|+|-         +.|.+-|+.
T Consensus       614 ~Gk~ilaTCk---------~yllL~d~~  632 (776)
T COG5167         614 NGKHILATCK---------NYLLLTDVP  632 (776)
T ss_pred             CCcEEEEeec---------ceEEEEecc
Confidence            9999999886         567777765

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=89.59  E-value=4.2  Score=34.40  Aligned_cols=32  Identities=16%  Similarity=0.220  Sum_probs=26.0

Q ss_pred             CceeEEEEccCC-----CceEEEEcCCCeEEEEEccC
Q 010997          279 DTVEDVTFCPSS-----AQEFCSVGDDSCLILWDARV  310 (496)
Q Consensus       279 ~~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~  310 (496)
                      ..|..++|+|.|     ..+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378999999954     45789999999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PRK13684 Ycf48-like protein; Provisional

Probab=89.33  E-value=20  Score=34.07  Aligned_cols=156  Identities=10%  Similarity=0.047  Sum_probs=80.0

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  219 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~  219 (496)
                      .+.++++.+.| ++.+++++ ..|.+..= ...+.           +.-..........++++.+.++++.++.| ..|.
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s-~~~gg-----------~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~  236 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVS-SRGNFYST-WEPGQ-----------TAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQ  236 (334)
T ss_pred             cceEEEEEECC-CCeEEEEe-CCceEEEE-cCCCC-----------CeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCE
Confidence            56788999988 66666555 44554431 11110           11112222333467899999988866655 4676


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      +++=..+.+..-....                                    .....-...+.++.+.+++ . ++.++.
T Consensus       237 ~~~~s~d~G~sW~~~~------------------------------------~~~~~~~~~l~~v~~~~~~-~-~~~~G~  278 (334)
T PRK13684        237 IRFNDPDDLESWSKPI------------------------------------IPEITNGYGYLDLAYRTPG-E-IWAGGG  278 (334)
T ss_pred             EEEccCCCCCcccccc------------------------------------CCccccccceeeEEEcCCC-C-EEEEcC
Confidence            6542222221100000                                    0000012346788888876 4 455556


Q ss_pred             CCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 010997          300 DSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  353 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~  353 (496)
                      +|.|.. ....++  .....   ..-....+.+.|.. ++..++ .+..|.|.-|+-
T Consensus       279 ~G~v~~-S~d~G~--tW~~~~~~~~~~~~~~~~~~~~-~~~~~~-~G~~G~il~~~~  330 (334)
T PRK13684        279 NGTLLV-SKDGGK--TWEKDPVGEEVPSNFYKIVFLD-PEKGFV-LGQRGVLLRYVG  330 (334)
T ss_pred             CCeEEE-eCCCCC--CCeECCcCCCCCcceEEEEEeC-CCceEE-ECCCceEEEecC
Confidence            776654 333333  11111   12224577788775 455555 557788877753

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.30  E-value=9.5  Score=36.83  Aligned_cols=167  Identities=14%  Similarity=0.097  Sum_probs=91.1

Q ss_pred             eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCC----CeE-EEEecCCCCcEEEEEcCCCcE
Q 010997          274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA----DLH-CVDWNPLDDNLILTGSADNSV  348 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~-~i~~sp~~~~~l~sgs~dg~i  348 (496)
                      +..--..|..+-..|++ +.+..-+. ..+.++++.+......+......+    .|+ .+..-. .+.-+++++.||.|
T Consensus       216 L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~v  292 (733)
T COG4590         216 LSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLV  292 (733)
T ss_pred             cCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCce
Confidence            44445677788889999 44444433 678888887655222211111111    121 111122 56778889999988


Q ss_pred             EEE-eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997          349 RMF-DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  427 (496)
Q Consensus       349 ~iw-d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (496)
                      .-| |.+...+ .....++.++-...++.-+.-. +.+..|++-+..|.+.++.....              ..+++...
T Consensus       293 sQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~--------------~~lL~~~~  356 (733)
T COG4590         293 SQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSE--------------KLLLFERA  356 (733)
T ss_pred             eeeeeeecCCC-CcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccC--------------cceehhhh
Confidence            766 6665321 1112222233222334333222 22335667777888877765441              12222221


Q ss_pred             CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                        ...+.-++++|.+.+++.   +|      .|.++++.+++.
T Consensus       357 --~~~~~~~~~Sp~~~~Ll~---e~------~gki~~~~l~Nr  388 (733)
T COG4590         357 --YQAPQLVAMSPNQAYLLS---ED------QGKIRLAQLENR  388 (733)
T ss_pred             --hcCcceeeeCcccchhee---ec------CCceEEEEecCC
Confidence              225667889999988774   22      388999999854

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.19  E-value=7.3  Score=38.30  Aligned_cols=83  Identities=12%  Similarity=0.138  Sum_probs=51.2

Q ss_pred             CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC---CCCCceEe----------c-cCCCCEEEEEEcCCC--CCE
Q 010997          324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG---VGSPINKF----------E-GHSAAVLCVQWSPDK--SSV  387 (496)
Q Consensus       324 ~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~---~~~~~~~~----------~-~h~~~i~~l~~sp~~--~~l  387 (496)
                      -.|..+..++ .|..++..+.+|.+.++=.+.....+   .++++...          . ...-.+..++|+|+.  ..-
T Consensus       104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  104 FEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            3577888899 89999999999976665433211110   02111111          1 112246688999986  223


Q ss_pred             EEEEeCCCcEEEEECCCCCc
Q 010997          388 FGSSAEDGLLNIWDYEKVGK  407 (496)
Q Consensus       388 las~~~dg~i~iwd~~~~~~  407 (496)
                      |..-+.|..|+|||+....+
T Consensus       183 L~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEEEecCcEEEEEecCCcch
Confidence            44666799999999988543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.13  E-value=10  Score=36.63  Aligned_cols=108  Identities=9%  Similarity=0.172  Sum_probs=75.2

Q ss_pred             cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc--eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 010997          276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  353 (496)
Q Consensus       276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~  353 (496)
                      ...++|.++.|++|. ..++.--.+.+|.+++....+...  ....+..+..|....|+.  ..-+|.-+..| +-+|-.
T Consensus        64 ~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v  139 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQV  139 (657)
T ss_pred             cCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEE
Confidence            345799999999998 789999999999999885443111  122233455688999986  35566665555 666655


Q ss_pred             CCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997          354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~  392 (496)
                      ..+     ...++..+.|...|.--.|.++-..+|.+.+
T Consensus       140 ~pe-----krslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  140 LPE-----KRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             chh-----hhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            443     2556677788889999999998775554444

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.48  E-value=2.8  Score=37.07  Aligned_cols=68  Identities=6%  Similarity=0.073  Sum_probs=47.0

Q ss_pred             CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE-ec-------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-~~-------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      .+.+|++-+.+|.+++||+.+.+.......+.. +.       .....|..+.++.+|.- +++-+ +|....|+..-
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~P-iV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVP-IVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCE-EEEEe-CCCEEEecccc
Confidence            678899999999999999998542211111111 11       35677899999988874 44554 67889998765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.21  E-value=2.5  Score=25.21  Aligned_cols=32  Identities=22%  Similarity=0.450  Sum_probs=23.0

Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCC--CcEEEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAED--GLLNIW  400 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~d--g~i~iw  400 (496)
                      ......-....|||||++|+.++..+  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            33455678899999999888777777  766666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=87.84  E-value=21  Score=32.93  Aligned_cols=78  Identities=17%  Similarity=0.229  Sum_probs=46.8

Q ss_pred             CCCceeEEEEccCCCceEEEEc------CCCeEEEEEccCCCccceee-e-ccCCCCeEEEEecCCCC-cEEEEEc-CC-
Q 010997          277 HEDTVEDVTFCPSSAQEFCSVG------DDSCLILWDARVGTSPVIKV-E-KAHDADLHCVDWNPLDD-NLILTGS-AD-  345 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~-~-~~~~~~v~~i~~sp~~~-~~l~sgs-~d-  345 (496)
                      -.+.|++|.|..+. .+++.|.      ....+..||..+........ . ..-.++|+.+.+...+. ++.+.|. .+ 
T Consensus        35 i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g  113 (281)
T PF12768_consen   35 ISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG  113 (281)
T ss_pred             ceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCC
Confidence            45789999998554 6677664      45678899988776211111 0 12247888888854344 4444444 33 


Q ss_pred             -CcEEEEeCCC
Q 010997          346 -NSVRMFDRRN  355 (496)
Q Consensus       346 -g~i~iwd~~~  355 (496)
                       ..|.-||=.+
T Consensus       114 ~~~l~~~dGs~  124 (281)
T PF12768_consen  114 STFLMKYDGSS  124 (281)
T ss_pred             CceEEEEcCCc
Confidence             3566776554

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=87.47  E-value=35  Score=34.53  Aligned_cols=96  Identities=13%  Similarity=0.200  Sum_probs=54.6

Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE------------------cCCCcEEEEeCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG------------------SADNSVRMFDRR  354 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg------------------s~dg~i~iwd~~  354 (496)
                      .++.++.+|.+...|.++++  .+......   ...++.+|   ..+..+                  ..+|.|.-+|+.
T Consensus       303 ~V~~g~~~G~l~ald~~tG~--~~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~  374 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGK--LISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK  374 (488)
T ss_pred             EEEEECCCceEEEEECCCCc--EeeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence            57788889999999999988  33222111   11223333   222221                  235778888887


Q ss_pred             CCCCCCCCCCceEeccCC--------CCE--EEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          355 NLTSNGVGSPINKFEGHS--------AAV--LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       355 ~~~~~~~~~~~~~~~~h~--------~~i--~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +      ++.+-+.....        .+.  ..+..  .+.. +..++.||.|+.+|..++
T Consensus       375 t------G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~-v~~g~~dG~l~ald~~tG  426 (488)
T cd00216         375 T------GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNL-VFAGAADGYFRAFDATTG  426 (488)
T ss_pred             C------CcEeeEeeCCccccccccCCcccCcceEe--cCCe-EEEECCCCeEEEEECCCC
Confidence            7      55554443220        111  11222  3343 447778999999999885

The alignment model contains an 8-bladed beta-propeller.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.42  E-value=14  Score=32.03  Aligned_cols=107  Identities=13%  Similarity=0.266  Sum_probs=66.2

Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---C---cEEEE-eCCCCCCCCCCCCc
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---N---SVRMF-DRRNLTSNGVGSPI  365 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g---~i~iw-d~~~~~~~~~~~~~  365 (496)
                      .|+.+.....|.+|++.....+....+. --+.|..+.++. .|++|+|-=.+   .   .+|+| +.+.....  ..++
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~--~~~v  105 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE--NSPV  105 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhccc--CCcE
Confidence            3433356678999999966655666663 448899999999 89999985332   2   56665 33332110  1111


Q ss_pred             e-Eecc---------------------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          366 N-KFEG---------------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       366 ~-~~~~---------------------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      . .+-|                     -..++.+++-.|....|+ .|+ ++.+.+|.+...
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEE
Confidence            1 1111                     234667888888665565 555 668999998763

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.35  E-value=11  Score=36.50  Aligned_cols=99  Identities=8%  Similarity=0.215  Sum_probs=63.3

Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      ...++|.++.||+|.+ ++|.--.|+.|.+++.......+           +....+..-...|..+.|+.+...-+++ 
T Consensus        64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l-----------~~~~~ck~k~~~IlGF~W~~s~e~A~i~-  130 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQL-----------EYTQECKTKNANILGFCWTSSTEIAFIT-  130 (657)
T ss_pred             cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhh-----------HHHHHhccCcceeEEEEEecCeeEEEEe-
Confidence            3467999999999998 68888889999999985421111           1122223334468899998764433332 


Q ss_pred             cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                       +        .-+-+|....     ....++..+.|+-.|.-.+|.
T Consensus       131 -~--------~G~e~y~v~p-----ekrslRlVks~~~nvnWy~yc  162 (657)
T KOG2377|consen  131 -D--------QGIEFYQVLP-----EKRSLRLVKSHNLNVNWYMYC  162 (657)
T ss_pred             -c--------CCeEEEEEch-----hhhhhhhhhhcccCccEEEEc
Confidence             2        3477777663     455667777777666544443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.19  E-value=5.4  Score=33.76  Aligned_cols=32  Identities=19%  Similarity=0.472  Sum_probs=26.9

Q ss_pred             CCEEEEEEcCCC-----CCEEEEEeCCCcEEEEECCC
Q 010997          373 AAVLCVQWSPDK-----SSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       373 ~~i~~l~~sp~~-----~~llas~~~dg~i~iwd~~~  404 (496)
                      ..|.+++|||.|     +.+||+...++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            479999999943     56889999999999998765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=86.81  E-value=30  Score=33.19  Aligned_cols=114  Identities=17%  Similarity=0.136  Sum_probs=56.3

Q ss_pred             EEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEec-CCCCcEEEEEcC-----------------
Q 010997          283 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN-PLDDNLILTGSA-----------------  344 (496)
Q Consensus       283 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s-p~~~~~l~sgs~-----------------  344 (496)
                      ...++|++ ..++-...+..|+-.|+++.+..  ..+......+-...|. ..++..++-.-.                 
T Consensus        85 g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~--~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~  161 (386)
T PF14583_consen   85 GGFLSPDD-RALYYVKNGRSLRRVDLDTLEER--VVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF  161 (386)
T ss_dssp             T-EE-TTS-SEEEEEETTTEEEEEETTT--EE--EEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred             ceEEecCC-CeEEEEECCCeEEEEECCcCcEE--EEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence            45667777 44544545568888899988733  3333344444445553 214444432211                 


Q ss_pred             -----CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC---CCc-EEEEECCCCC
Q 010997          345 -----DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGL-LNIWDYEKVG  406 (496)
Q Consensus       345 -----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~---dg~-i~iwd~~~~~  406 (496)
                           ...|.-.|+.+      +. ...+-.-...+..+.|+|..+.+|+-|-+   |.. -+||-++..+
T Consensus       162 ~~a~p~~~i~~idl~t------G~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg  225 (386)
T PF14583_consen  162 YEARPHCRIFTIDLKT------GE-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG  225 (386)
T ss_dssp             HHC---EEEEEEETTT---------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred             HhhCCCceEEEEECCC------Cc-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence                 12234445554      33 23333345667889999998887765543   322 3677776543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.64  E-value=0.14  Score=49.22  Aligned_cols=137  Identities=12%  Similarity=0.248  Sum_probs=89.3

Q ss_pred             CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997          322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  401 (496)
Q Consensus       322 ~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd  401 (496)
                      +-.......|-| .+.-++.++.+..+..||-..       +...... ..+....++|.-++..+++.+-..+.+.+||
T Consensus        33 alv~pi~~~w~~-e~~nlavaca~tiv~~YD~ag-------q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd  103 (615)
T KOG2247|consen   33 ALVGPIIHRWRP-EGHNLAVACANTIVIYYDKAG-------QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWD  103 (615)
T ss_pred             hccccceeeEec-CCCceehhhhhhHHHhhhhhc-------ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeech
Confidence            333444567888 555588888999999999764       4444443 3445568889888887766777789999999


Q ss_pred             CCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHH
Q 010997          402 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE  481 (496)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~  481 (496)
                      +.+.. .+.            +..-..|....  +.|++..+.++        .|-..|.+.|++..      ....+..
T Consensus       104 ~n~ey-tqq------------LE~gg~~s~sl--l~wsKg~~el~--------ig~~~gn~viynhg------tsR~iiv  154 (615)
T KOG2247|consen  104 VNSEY-TQQ------------LESGGTSSKSL--LAWSKGTPELV--------IGNNAGNIVIYNHG------TSRRIIV  154 (615)
T ss_pred             hhhhh-HHH------------HhccCcchHHH--HhhccCCcccc--------ccccccceEEEecc------chhhhhh
Confidence            98732 111            11111222233  67888666655        34445889999887      4555555


Q ss_pred             HHhccceEEEeccCC
Q 010997          482 LEKFKAHVISCTSKP  496 (496)
Q Consensus       482 l~~h~~~v~~~~~sP  496 (496)
                      +-.|..+++.+++.|
T Consensus       155 ~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen  155 MGKHQRRGTQIAVTL  169 (615)
T ss_pred             hcccccceeEEEecc
Confidence            555888888887754

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.62  E-value=10  Score=37.36  Aligned_cols=78  Identities=19%  Similarity=0.330  Sum_probs=50.3

Q ss_pred             CceeEEEEccCCCceEEEEcCCCeEEEEEcc---------CCCccce-eee--------ccCCCCeEEEEecCCC--CcE
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDAR---------VGTSPVI-KVE--------KAHDADLHCVDWNPLD--DNL  338 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~-~~~--------~~~~~~v~~i~~sp~~--~~~  338 (496)
                      -.|..+..++.| ..++-.|.+|.+.++=.+         .++.... +++        ....-.+..++|+|++  +..
T Consensus       104 feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  104 FEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            467888899999 567777777876665422         1211110 110        1112345678999965  677


Q ss_pred             EEEEcCCCcEEEEeCCCCC
Q 010997          339 ILTGSADNSVRMFDRRNLT  357 (496)
Q Consensus       339 l~sgs~dg~i~iwd~~~~~  357 (496)
                      |..-+.|..||+||+...+
T Consensus       183 L~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEEEecCcEEEEEecCCcc
Confidence            8888899999999998744

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.12  E-value=46  Score=34.62  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=42.6

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  220 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i  220 (496)
                      |.+-++..+|..-.-++  +.-..|+||++.....            -..+-.|.  .+-++.|+.+. .|+....||++
T Consensus        44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~lL------------~~~~w~~~--~lI~mgWs~~e-eLI~v~k~g~v  106 (829)
T KOG2280|consen   44 GGPIAVTRSPSKLVPLY--SARPYIRIFNISGQLL------------GRILWKHG--ELIGMGWSDDE-ELICVQKDGTV  106 (829)
T ss_pred             CCceEEEeccccccccc--ccceeEEEEeccccch------------HHHHhcCC--CeeeecccCCc-eEEEEeccceE
Confidence            34445555552222222  4445799999876521            11222333  35699999665 57777889999


Q ss_pred             EEEecCC
Q 010997          221 VLWSIQD  227 (496)
Q Consensus       221 ~iwd~~~  227 (496)
                      .++++-.
T Consensus       107 ~Vy~~~g  113 (829)
T KOG2280|consen  107 HVYGLLG  113 (829)
T ss_pred             EEeecch
Confidence            9999864

>PLN02153 epithiospecifier protein

Probab=86.09  E-value=32  Score=32.78  Aligned_cols=22  Identities=14%  Similarity=0.341  Sum_probs=14.2

Q ss_pred             CCcEEEEEeCC-------CcEEEEeCCCC
Q 010997          152 NTKIVATHTDS-------PDVLIWDVEAQ  173 (496)
Q Consensus       152 ~~~~lat~~~d-------g~i~iwd~~~~  173 (496)
                      ++.+++.|+.+       ..+.+||+.+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~   60 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTH   60 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCC
Confidence            45677777653       25788887765

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=85.95  E-value=44  Score=34.17  Aligned_cols=21  Identities=10%  Similarity=0.216  Sum_probs=18.5

Q ss_pred             ceEEEEcCCCeEEEEEccCCC
Q 010997          292 QEFCSVGDDSCLILWDARVGT  312 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~  312 (496)
                      ..++.+..+|.+.+.|.++++
T Consensus       316 ~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       316 KLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             EEEEEeCCCceEEEEECCCCc
Confidence            378889999999999999887

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=85.79  E-value=13  Score=38.18  Aligned_cols=30  Identities=17%  Similarity=0.231  Sum_probs=26.2

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQD  227 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~  227 (496)
                      -++++.-+|.++-++++..||+|++++...
T Consensus        16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~   45 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIP   45 (1636)
T ss_pred             eeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence            467788889999999999999999999864

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.61  E-value=23  Score=30.77  Aligned_cols=117  Identities=10%  Similarity=0.149  Sum_probs=67.8

Q ss_pred             cEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC---C---cEEEE---ECCCCC-
Q 010997          337 NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED---G---LLNIW---DYEKVG-  406 (496)
Q Consensus       337 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d---g---~i~iw---d~~~~~-  406 (496)
                      ..|..+.....|.+|++....    ..++.+|.. -+.|..+.++..|.+++ |--.+   .   .+|+|   ...... 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~----~~~~~~F~T-v~~V~~l~y~~~GDYlv-TlE~k~~~~~~~fvR~Y~NWr~~~~~~  102 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEE----CPLLCTFST-VGRVLQLVYSEAGDYLV-TLEEKNKRSPVDFVRAYFNWRSQKEEN  102 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCC----CceeEEEcc-hhheeEEEeccccceEE-EEEeecCCccceEEEEEEEhhhhcccC
Confidence            444444666789999998432    567777765 48899999999999865 54322   2   45554   322110 


Q ss_pred             cccC----C---CC--CCCCC-CCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          407 KKVE----Q---GP--RTTNY-PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       407 ~~~~----~---~~--~~~~~-~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      ....    .   ..  .+... ..+ +..+. -..++.+++..|..+.+++++.         +++.||.+...
T Consensus       103 ~~v~vRiaG~~v~~~~~~~~~~qle-iiElP-l~~~p~ciaCC~~tG~LlVg~~---------~~l~lf~l~~~  165 (215)
T PF14761_consen  103 SPVRVRIAGHRVTPSFNESSKDQLE-IIELP-LSEPPLCIACCPVTGNLLVGCG---------NKLVLFTLKYQ  165 (215)
T ss_pred             CcEEEEEcccccccCCCCccccceE-EEEec-CCCCCCEEEecCCCCCEEEEcC---------CEEEEEEEEEE
Confidence            0000    0   00  00000 011 11122 2457788999998778877654         78999998754

>PRK10115 protease 2; Provisional

Probab=85.26  E-value=55  Score=34.74  Aligned_cols=71  Identities=14%  Similarity=0.071  Sum_probs=41.7

Q ss_pred             ceeEEEecCCCCcEEEEEeC-CC----cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          142 EVNRIRELPQNTKIVATHTD-SP----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      .+..+.++| ++++||-+.+ +|    .|++-|+.++....           ..+.+    .-..++|.++++.|+-...
T Consensus       128 ~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~-----------~~i~~----~~~~~~w~~D~~~~~y~~~  191 (686)
T PRK10115        128 TLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYP-----------ELLDN----VEPSFVWANDSWTFYYVRK  191 (686)
T ss_pred             EEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCC-----------ccccC----cceEEEEeeCCCEEEEEEe
Confidence            466778888 7777765543 33    68899987662110           11111    1146899999875554432


Q ss_pred             C------CcEEEEecCCc
Q 010997          217 D------KSVVLWSIQDH  228 (496)
Q Consensus       217 D------g~i~iwd~~~~  228 (496)
                      +      ..|..+++.++
T Consensus       192 ~~~~~~~~~v~~h~lgt~  209 (686)
T PRK10115        192 HPVTLLPYQVWRHTIGTP  209 (686)
T ss_pred             cCCCCCCCEEEEEECCCC
Confidence            2      35666666654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=84.97  E-value=8.9  Score=36.99  Aligned_cols=167  Identities=12%  Similarity=0.116  Sum_probs=93.6

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcce-eeeecCCCCceEEecCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEF-ALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~-~l~~~p~~~~l~sg~~D  217 (496)
                      -...|..+-..| +++.+..-+. .++.|+++.+......       +..-...+.....|+ .+..-..|.-|+.++.|
T Consensus       219 ~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~r-------kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d  289 (733)
T COG4590         219 PFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIR-------KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED  289 (733)
T ss_pred             CccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchh-------hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence            456778888888 8887776555 5899999887632211       000011121111232 33333455668888899


Q ss_pred             CcEEEE-ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          218 KSVVLW-SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       218 g~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      |-|.-| |++....                                   +....++.++-...++.-+.-- ...+-|++
T Consensus       290 G~vsQWFdvr~~~~-----------------------------------p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~  333 (733)
T COG4590         290 GLVSQWFDVRRDGQ-----------------------------------PHLNHIRNFKLAPAEVQFLLPE-TNRKGFYS  333 (733)
T ss_pred             CceeeeeeeecCCC-----------------------------------CcceeeeccccCcccceeeccc-cccceEEE
Confidence            999888 4442211                                   1111112222222233222211 12246888


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~  355 (496)
                      -+..|++.++.....+  ... +..--..+.-+++|| .+.++++- ..|.|+++.+.+
T Consensus       334 l~~~G~L~~f~st~~~--~lL-~~~~~~~~~~~~~Sp-~~~~Ll~e-~~gki~~~~l~N  387 (733)
T COG4590         334 LYRNGTLQSFYSTSEK--LLL-FERAYQAPQLVAMSP-NQAYLLSE-DQGKIRLAQLEN  387 (733)
T ss_pred             EcCCCceeeeecccCc--cee-hhhhhcCcceeeeCc-ccchheee-cCCceEEEEecC
Confidence            8888998888655444  222 222334677889999 88888775 456799998887

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=84.54  E-value=14  Score=36.04  Aligned_cols=91  Identities=14%  Similarity=0.161  Sum_probs=57.5

Q ss_pred             CeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEE-E---Ee-------------c
Q 010997          270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHC-V---DW-------------N  332 (496)
Q Consensus       270 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-i---~~-------------s  332 (496)
                      ....+......+.+++.+|.+ .+.++...=|.|.++|+..+.  .++..++-.+.=.. +   .-             .
T Consensus       299 ~r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~--vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~  375 (415)
T PF14655_consen  299 MRFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGI--VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS  375 (415)
T ss_pred             eEEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCCh--hhhhhccCccceEEEEEeecccccccccccccCCC
Confidence            344556666789999999997 777777777999999998876  44444332221100 0   00             0


Q ss_pred             CCCC-cEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          333 PLDD-NLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       333 p~~~-~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      +... .+++-+-.-|.|.||.++.      +..+..+.
T Consensus       376 ~~~~l~LvIyaprRg~lEvW~~~~------g~Rv~a~~  407 (415)
T PF14655_consen  376 SRFALFLVIYAPRRGILEVWSMRQ------GPRVAAFN  407 (415)
T ss_pred             CcceEEEEEEeccCCeEEEEecCC------CCEEEEEE
Confidence            0001 1334466789999999998      66666654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=84.07  E-value=32  Score=31.11  Aligned_cols=191  Identities=9%  Similarity=0.023  Sum_probs=96.9

Q ss_pred             cceeeeecCCCCceEEecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee
Q 010997          198 AEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN  275 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (496)
                      -..++.|..++.++-|.+.-|  .|+.+|+.+++.......                                       
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l---------------------------------------   86 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL---------------------------------------   86 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE----------------------------------------
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC---------------------------------------
Confidence            345788877888888888766  789999987643211110                                       


Q ss_pred             cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997          276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~  355 (496)
                      ...---..++...+  .++.-.=.++...+||..+-+  .+..+ .....-..++.   ++..|+.+.....|.++|..+
T Consensus        87 ~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~--~~~~~-~y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen   87 PPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLK--KIGTF-PYPGEGWGLTS---DGKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTE--EEEEE-E-SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT
T ss_pred             CccccceeEEEECC--EEEEEEecCCeEEEEccccce--EEEEE-ecCCcceEEEc---CCCEEEEECCccceEEECCcc
Confidence            01111223333322  344444567889999998765  33333 23345566663   455666666677899999887


Q ss_pred             CCCCCCCCCceEeccC-----CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-----
Q 010997          356 LTSNGVGSPINKFEGH-----SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-----  425 (496)
Q Consensus       356 ~~~~~~~~~~~~~~~h-----~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----  425 (496)
                      +      ....++...     -..++-+.|- +|. |+|=.-....|..-|..++.- ....+..     .+...     
T Consensus       159 f------~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~V-~~~iDls-----~L~~~~~~~~  224 (264)
T PF05096_consen  159 F------KEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETGKV-VGWIDLS-----GLRPEVGRDK  224 (264)
T ss_dssp             -------SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSEEEEEETTT-BE-EEEEE-H-----HHHHHHTSTT
T ss_pred             c------ceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCeE-EEEEEhh-----Hhhhcccccc
Confidence            3      334433321     1234555554 332 454444444455555554210 0000000     00000     


Q ss_pred             -ecCCCCCcceEEecCCCCcEEEEe
Q 010997          426 -HAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       426 -~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                       ...-.+..+.+||.|....+++++
T Consensus       225 ~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  225 SRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             cccccCCeeEeEeEeCCCCEEEEEe
Confidence             001135678999999998888865

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=83.56  E-value=15  Score=35.96  Aligned_cols=47  Identities=15%  Similarity=0.208  Sum_probs=38.1

Q ss_pred             cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          321 AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       321 ~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      .....+.+|+.+| ++.+.|+...=|.|.|+|+.+      +..++.+++-.+.
T Consensus       305 D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~------~~vvrmWKGYRdA  351 (415)
T PF14655_consen  305 DSKREGESICLSP-SGRLAAVTDSLGRVLLIDVAR------GIVVRMWKGYRDA  351 (415)
T ss_pred             cCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCC------ChhhhhhccCccc
Confidence            3445688999999 799999888889999999998      7778877776553

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=83.09  E-value=72  Score=34.32  Aligned_cols=73  Identities=21%  Similarity=0.197  Sum_probs=47.9

Q ss_pred             CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC----CCce---Eec------cCCCCEEEEEEcCCCCCEEEE
Q 010997          324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG----SPIN---KFE------GHSAAVLCVQWSPDKSSVFGS  390 (496)
Q Consensus       324 ~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~----~~~~---~~~------~h~~~i~~l~~sp~~~~llas  390 (496)
                      ..|.+|+... -+.+++..-.||+|.++|..++......    ....   .+.      ..-..+..++|||.+.. ++.
T Consensus       260 ~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~-~v~  337 (753)
T PF11635_consen  260 KRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCS-LVQ  337 (753)
T ss_pred             CeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccce-EEE
Confidence            5577777766 6789999999999999999886421111    1111   110      11124456889999884 567


Q ss_pred             EeCCCcEE
Q 010997          391 SAEDGLLN  398 (496)
Q Consensus       391 ~~~dg~i~  398 (496)
                      -..+|.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            77788866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.07  E-value=73  Score=34.39  Aligned_cols=127  Identities=12%  Similarity=0.169  Sum_probs=73.8

Q ss_pred             cCCCceeEEEEc---c--CCCceEEEEcCCCeEEEEEc------cCCCc-------cceeeec---cCCCCeEEEEecCC
Q 010997          276 GHEDTVEDVTFC---P--SSAQEFCSVGDDSCLILWDA------RVGTS-------PVIKVEK---AHDADLHCVDWNPL  334 (496)
Q Consensus       276 ~h~~~v~~l~~~---~--~~~~~l~s~~~dg~i~iwd~------~~~~~-------~~~~~~~---~~~~~v~~i~~sp~  334 (496)
                      .-..+|..|+|.   .  +....++..-....+.|+..      .....       ..+..+.   ....+...++|+|.
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~  156 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW  156 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence            456788888887   2  11112344445566777661      11110       0111111   13456789999998


Q ss_pred             CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC----------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS----------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~----------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      +...||+-...|...|||+....... ...+.....+.          ..-..+.|.++...|| .++ ...+.++|+..
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~-~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRK-SSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES  233 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccC-CcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence            88899999999999999992211100 01111111111          3345889988877665 443 56799999987


Q ss_pred             C
Q 010997          405 V  405 (496)
Q Consensus       405 ~  405 (496)
                      .
T Consensus       234 ~  234 (765)
T PF10214_consen  234 N  234 (765)
T ss_pred             C
Confidence            4

These proteins are found in fungi.

>PRK13684 Ycf48-like protein; Provisional

Probab=82.73  E-value=45  Score=31.73  Aligned_cols=108  Identities=14%  Similarity=0.195  Sum_probs=58.7

Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  357 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~  357 (496)
                      ...+.++.+.|++ .+++ .+..|.+..- .+.+...-......-...++++.+.+ ++..+++| ..|.+++=....  
T Consensus       172 ~g~~~~i~~~~~g-~~v~-~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~--  244 (334)
T PRK13684        172 AGVVRNLRRSPDG-KYVA-VSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDD--  244 (334)
T ss_pred             cceEEEEEECCCC-eEEE-EeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCC--
Confidence            4568889999887 4444 4455655432 11221111112223456789999999 77777665 567665322222  


Q ss_pred             CCCCCCCceEecc----CCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997          358 SNGVGSPINKFEG----HSAAVLCVQWSPDKSSVFGSSAEDGLLN  398 (496)
Q Consensus       358 ~~~~~~~~~~~~~----h~~~i~~l~~sp~~~~llas~~~dg~i~  398 (496)
                          +..-.....    -...+..+.+.|++. +++ ++.+|.|.
T Consensus       245 ----G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~  283 (334)
T PRK13684        245 ----LESWSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLL  283 (334)
T ss_pred             ----CCccccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEE
Confidence                111111111    124578899999876 554 44577554

>PLN02193 nitrile-specifier protein

Probab=81.88  E-value=60  Score=32.63  Aligned_cols=62  Identities=6%  Similarity=-0.083  Sum_probs=32.1

Q ss_pred             ceEEEEcCCC-----eEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCC----CcEEEEeCCCC
Q 010997          292 QEFCSVGDDS-----CLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRNL  356 (496)
Q Consensus       292 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~d----g~i~iwd~~~~  356 (496)
                      .+++.|+.++     .+..||+.+.+...+...   .........+.+   ++.+++.|+.+    ..+.+||+.+.
T Consensus       280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~---~gkiyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV---QGKVWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE---CCcEEEEECCCCCccCceEEEECCCC
Confidence            5666776543     467788776552111110   001111122222   45677777655    45889998873

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=81.28  E-value=11  Score=33.28  Aligned_cols=65  Identities=9%  Similarity=0.188  Sum_probs=42.2

Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCcccee-----eec-------cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIK-----VEK-------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~-------~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~  355 (496)
                      ..+ .++++.+.+|.+++||+.+.+.....     .+.       .....|..+.++. +|.-+++-+ +|....||...
T Consensus        20 ~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   20 CNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             eCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecccc
Confidence            344 67889999999999999987621110     011       2445677777776 666655543 56777777664

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.08  E-value=33  Score=37.98  Aligned_cols=75  Identities=15%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             CCCceeEEEEccCCCceEEEEcCCCeEEEEEcc----CC---C-c--------------cceeeec-cCCCCeEEEEecC
Q 010997          277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR----VG---T-S--------------PVIKVEK-AHDADLHCVDWNP  333 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~----~~---~-~--------------~~~~~~~-~~~~~v~~i~~sp  333 (496)
                      ....|+|+....+| ++|++|- ||  .+|.+.    .+   + +              |.+.... .+.++|..++...
T Consensus       177 dg~~V~~I~~t~nG-RIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  177 DGVSVNCITYTENG-RIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             CCceEEEEEeccCC-cEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            34578899866666 6666654 45  444331    11   0 0              1111122 5677999999998


Q ss_pred             CCCcEEEEEcCCCcEEEEeCCCC
Q 010997          334 LDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       334 ~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                       ..+.+.+-+..|+|.+||+...
T Consensus       253 -SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  253 -SRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             -ccceeeeeccCceEEEEEccCC
Confidence             7889999999999999999873

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=80.98  E-value=14  Score=35.08  Aligned_cols=26  Identities=8%  Similarity=0.162  Sum_probs=20.9

Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEec
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSI  225 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~  225 (496)
                      -++|+|.|+|+.|++ ...|.|++++.
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~   29 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDK   29 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEET
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeC
Confidence            368999999876654 56999999993

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.86  E-value=38  Score=37.52  Aligned_cols=38  Identities=13%  Similarity=0.129  Sum_probs=29.7

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCC
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQ  173 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~  173 (496)
                      ...+-+.....++|.| ...++|.|+.+|.|+++-...-
T Consensus        30 ~~~G~~~~~~~~afD~-~q~llai~t~tg~i~~yg~~~v   67 (993)
T KOG1983|consen   30 NRHGFPSTPSALAFDP-TQGLLAIGTRTGAIKIYGQPGV   67 (993)
T ss_pred             eecCCCCCCcceeecc-ccceEEEEEecccEEEecccce
Confidence            3344555677888999 7789999999999999976543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=80.74  E-value=8.4  Score=36.59  Aligned_cols=114  Identities=11%  Similarity=0.196  Sum_probs=58.7

Q ss_pred             CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe----ccCCCCEEEEEEcCC---CCCEEEEEeCC---
Q 010997          325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF----EGHSAAVLCVQWSPD---KSSVFGSSAED---  394 (496)
Q Consensus       325 ~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~i~~l~~sp~---~~~llas~~~d---  394 (496)
                      ....|+|.| ++.+|++ ...|.|++++.....    ...+..+    .........++++|+   ..+|+++.+..   
T Consensus         3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~~~g~~----~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~   76 (331)
T PF07995_consen    3 NPRSMAFLP-DGRLLVA-ERSGRIWVVDKDGSL----KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED   76 (331)
T ss_dssp             SEEEEEEET-TSCEEEE-ETTTEEEEEETTTEE----CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred             CceEEEEeC-CCcEEEE-eCCceEEEEeCCCcC----cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence            357899999 7877765 459999999932210    0122222    233457899999994   34466555532   


Q ss_pred             -----CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC---CCCCcceEEecCCCCcEEEEecCC
Q 010997          395 -----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---HRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       395 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                           ..|.-|.+........       .+..++.....   ....-..|+|.|++ .|+++.++.
T Consensus        77 ~~~~~~~v~r~~~~~~~~~~~-------~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~  134 (331)
T PF07995_consen   77 GGDNDNRVVRFTLSDGDGDLS-------SEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDG  134 (331)
T ss_dssp             SSSEEEEEEEEEEETTSCEEE-------EEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-T
T ss_pred             CCCcceeeEEEeccCCccccc-------cceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCC
Confidence                 2333344433100000       01122222222   23345679999988 777777764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=80.33  E-value=82  Score=33.18  Aligned_cols=72  Identities=26%  Similarity=0.440  Sum_probs=43.1

Q ss_pred             eEEEEecCCCCcEEEEEcCCC-----cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 010997          326 LHCVDWNPLDDNLILTGSADN-----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW  400 (496)
Q Consensus       326 v~~i~~sp~~~~~l~sgs~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iw  400 (496)
                      -..+.|-| .|..+++-..||     .|.++...-+..   |..-. -.+-...+..++|+-... ++|. +..+.|.+|
T Consensus       249 e~~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrH---Gef~l-r~~~dEk~~~~~wn~~s~-vlav-~~~n~~~lw  321 (1243)
T COG5290         249 EHQLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRH---GEFDL-RVGCDEKAFLENWNLLST-VLAV-AEGNLLKLW  321 (1243)
T ss_pred             hhcccccc-CCceeeeeccCCCCCcceEEEEccCCccc---CCccc-cCCchhhhhhhhhhHHHH-HHHH-hhcceEEEE
Confidence            34589999 899999877555     355665443221   11111 112344567788876665 4533 346789999


Q ss_pred             ECCC
Q 010997          401 DYEK  404 (496)
Q Consensus       401 d~~~  404 (496)
                      -...
T Consensus       322 ttkN  325 (1243)
T COG5290         322 TTKN  325 (1243)
T ss_pred             Eccc
Confidence            8765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	496
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		8e-52
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-49
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		9e-49
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		9e-49
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		1e-48
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-47
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-09
2h9l_A	329	Wdr5delta23 Length = 329		3e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-09
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-08
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-06
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-08
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-07
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-06
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		1e-05
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		3e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		3e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		4e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		3e-05
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		5e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		5e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		2e-04
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		2e-04
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		2e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		3e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		4e-04
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		8e-04

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score =  201 bits (511), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 212/453 (46%), Gaps = 66/453 (14%)
Query: 37  QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
           +  ++++Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T 
Sbjct: 14  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTS 73
Query: 95  GSVPNTLVIANCEVVKPRVAAAEHISQFNEE--------ARSPFVKKHKTIIHPGEVNRI 146
               N LVIA+ ++  P   A    S ++ E        + S  ++    I H GEVNR 
Sbjct: 74  DE-QNHLVIASVQL--PNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRA 130
Query: 147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP 206
           R +PQN  I+AT T S DVL++D    P++    G  N  PDL L GHQ    + L+  P
Sbjct: 131 RYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN--PDLRLRGHQKEG-YGLSWNP 187
Query: 207 T-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG 265
               ++LS   D ++ LW                         I   PK         +G
Sbjct: 188 NLSGHLLSASDDHTICLWD------------------------ISAVPK---------EG 214
Query: 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHDA 324
             V  + I+ GH   VEDV++       F SV DD  L++WD R   TS       AH A
Sbjct: 215 KVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTA 274
Query: 325 DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK 384
           +++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP  
Sbjct: 275 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPHN 329
Query: 385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
            ++  SS  D  LN+WD  K+G+  EQ P    + P  L F H GH  K+ DF WN ++P
Sbjct: 330 ETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 387
Query: 444 WXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 476
           W                 +Q+W+M++ IY  +D
Sbjct: 388 W-------VICSVSEDNIMQVWQMAENIYNDED 413

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  192 bits (488), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 141/457 (30%), Positives = 207/457 (45%), Gaps = 70/457 (15%)
Query: 34  TAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQT 93
           T  +  ++++Y  WK   P LYD +  H L WPSL+ +W P++ +   K+    +L   T
Sbjct: 13  TVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGT 72
Query: 94  DGS-VPNTLVIANCEVVKPRVAAAEHISQFN----EEARSPF---------VKKHKTIIH 139
             S   N LV+A       RV      +QF+    +  +  F         ++    I H
Sbjct: 73  HTSDEQNHLVVA-------RVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINH 125
Query: 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE 199
            GEVNR R +PQN  I+AT T S DVL++D    P +    G  N  PDL L GHQ    
Sbjct: 126 EGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECN--PDLRLRGHQKEGY 183
Query: 200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 259
                     ++LS   D +V LW I               +AG         PK     
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDI---------------NAG---------PK----- 214
Query: 260 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKV 318
               +G  V  + I+ GH   VEDV +       F SV DD  L++WD R   TS    +
Sbjct: 215 ----EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHL 270
Query: 319 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378
             AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  V
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEIFQV 325
Query: 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438
            WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+ DF W
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 439 NASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQ 475
           N ++PW                 +QIW+M++ IY  +
Sbjct: 385 NPNEPW-------VICSVSEDNIMQIWQMAENIYNDE 414

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score =  191 bits (485), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 210/453 (46%), Gaps = 66/453 (14%)
Query: 37  QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
           +  ++++Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T 
Sbjct: 20  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 79
Query: 95  GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKHKTIIHPGEVNR 145
               N L+IA+ ++  P   A    S ++ E +  F         ++    I H GEVNR
Sbjct: 80  DE-QNHLLIASVQL--PSEDAQFDGSHYDNE-KGEFGGFGSVCGKIEIEIKINHEGEVNR 135
Query: 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 205
            R +PQN  ++AT T S DVL++D    P++    G    +PDL L GHQ    + L+  
Sbjct: 136 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--ECQPDLRLRGHQKEG-YGLSWN 192
Query: 206 PT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264
           P    Y+LS   D ++ LW I           AT K                       +
Sbjct: 193 PNLNGYLLSASDDHTICLWDIN----------ATPK-----------------------E 219
Query: 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHD 323
              +  + I+ GH   VEDV +       F SV DD  L++WD R   TS       AH 
Sbjct: 220 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 279
Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383
           A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP 
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPH 334
Query: 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
             ++  SS  D  L++WD  K+G++ +      + P  L F H GH  K+ DF WN ++P
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 393
Query: 444 WXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 476
           W                 +Q+W+M++ +Y  ++
Sbjct: 394 W-------IICSVSEDNIMQVWQMAENVYNDEE 419

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score =  191 bits (485), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 210/453 (46%), Gaps = 66/453 (14%)
Query: 37  QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
           +  ++++Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T 
Sbjct: 18  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 77
Query: 95  GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKHKTIIHPGEVNR 145
               N L+IA+ ++  P   A    S ++ E +  F         ++    I H GEVNR
Sbjct: 78  DE-QNHLLIASVQL--PSEDAQFDGSHYDNE-KGEFGGFGSVCGKIEIEIKINHEGEVNR 133
Query: 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 205
            R +PQN  ++AT T S DVL++D    P++    G    +PDL L GHQ    + L+  
Sbjct: 134 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG--ECQPDLRLRGHQKEG-YGLSWN 190
Query: 206 PT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264
           P    Y+LS   D ++ LW I           AT K                       +
Sbjct: 191 PNLNGYLLSASDDHTICLWDIN----------ATPK-----------------------E 217
Query: 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHD 323
              +  + I+ GH   VEDV +       F SV DD  L++WD R   TS       AH 
Sbjct: 218 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277
Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383
           A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP 
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPH 332
Query: 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
             ++  SS  D  L++WD  K+G++ +      + P  L F H GH  K+ DF WN ++P
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 391
Query: 444 WXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 476
           W                 +Q+W+M++ +Y  ++
Sbjct: 392 W-------IICSVSEDNIMQVWQMAENVYNDEE 417

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 210/453 (46%), Gaps = 66/453 (14%)
Query: 37  QHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNR--QRLYLSEQTD 94
           +  ++++Y  WK   P LYD +  H L WPSL+ +W P + +   K+    RL L   T 
Sbjct: 22  ERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTS 81
Query: 95  GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPF---------VKKHKTIIHPGEVNR 145
               N L+IA+ ++  P   A    S ++ E +  F         ++    I H GEVNR
Sbjct: 82  DE-QNHLLIASVQL--PSEDAQFDGSHYDNE-KGEFGGFGSVCGKIEIEIKINHEGEVNR 137
Query: 146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC 205
            R +PQN  ++AT T S DVL++D    P++    G    +PDL L GHQ    + L+  
Sbjct: 138 ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGEC--QPDLRLRGHQKEG-YGLSWN 194
Query: 206 PT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD 264
           P    Y+LS   D ++ LW I           AT K                       +
Sbjct: 195 PNLNGYLLSASDDHTICLWDIN----------ATPK-----------------------E 221
Query: 265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKVEKAHD 323
              +  + I+ GH   VEDV +       F SV DD  L++WD R   TS       AH 
Sbjct: 222 HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 281
Query: 324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD 383
           A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  VQWSP 
Sbjct: 282 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHSFESHKDEIFQVQWSPH 336
Query: 384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
             ++  SS  D  L++WD  K+G++ +      + P  L F H GH  K+ DF WN ++P
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 395
Query: 444 WXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQD 476
           W                 +Q+W+M++ +Y  ++
Sbjct: 396 W-------IICSVSEDNIMQVWQMAENVYNDEE 421

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score =  185 bits (469), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 141/457 (30%), Positives = 204/457 (44%), Gaps = 70/457 (15%)
Query: 34  TAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQT 93
           T  +  ++++Y  WK   P LYD +  H L WPSL+ +W P++ +   K+    +L   T
Sbjct: 13  TVEERVINEEYKIWKKNTPFLYDLVXTHALQWPSLTVQWLPEVTKPEGKDYALHWLVLGT 72
Query: 94  DGS-VPNTLVIANCEVVKPRVAAAEHISQFN----EEARSPF---------VKKHKTIIH 139
             S   N LV+A       RV      +QF+    +  +  F         ++    I H
Sbjct: 73  HTSDEQNHLVVA-------RVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINH 125
Query: 140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAE 199
            GEVNR R  PQN  I+AT T S DVL++D    P +    G  N  PDL L GHQ    
Sbjct: 126 EGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECN--PDLRLRGHQKEGY 183
Query: 200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGN 259
                     ++LS   D +V LW I               +AG         PK     
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDI---------------NAG---------PK----- 214
Query: 260 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG-TSPVIKV 318
               +G  V  + I+ GH   VEDV +       F SV DD  L +WD R   TS    +
Sbjct: 215 ----EGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHL 270
Query: 319 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378
             AH A+++C+ +NP  + ++ TGSAD +V ++D RNL        ++ FE H   +  V
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK-----LHTFESHKDEIFQV 325
Query: 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438
            WSP   ++  SS  D  LN+WD  K+G++ +      + P  L F H GH  K+ DF W
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEE-QSAEDAEDGPPELLFIHGGHTAKISDFSW 384
Query: 439 NASDPWXXXXXXXXXXXXXXXXXLQIWRMSDLIYRPQ 475
           N ++PW                  QIW+ ++ IY  +
Sbjct: 385 NPNEPWVICSVSEDNIX-------QIWQXAENIYNDE 414

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 84  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 139
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 140 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 192
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 193 GLCRIWD 199

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 86  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 141
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 142 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 194
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 195 GLCRIWD 201

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 117/280 (41%), Gaps = 53/280 (18%)
Query: 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213
           K +AT  +   + IWD+E   NR  V+         IL GH+ +  ++L   P+   ++S
Sbjct: 136 KFLATGAEDRLIRIWDIE---NRKIVM---------ILQGHEQDI-YSLDYFPSGDKLVS 182
Query: 214 GGKDKSVVLW-----------SIQDHITSSATDPATAK--SAGSSGSIIKQ-SPKPGDGN 259
           G  D++V +W           SI+D +T+ A  P   K  +AGS    ++    + G   
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 260 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW---------DARV 310
           ++       G      GH+D+V  V F     Q   S   D  + LW         D++ 
Sbjct: 243 ERLDSENESG-----TGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 296
Query: 311 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370
             S   +V      D         +D  IL+GS D  V  +D+++      G+P+   +G
Sbjct: 297 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS------GNPLLMLQG 350
Query: 371 HSAAVLCVQWSPDKS-----SVFGSSAEDGLLNIWDYEKV 405
           H  +V+ V  +   S     +VF + + D    IW Y+K+
Sbjct: 351 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 68  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 177 GLCRIWD 183

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 79  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 134
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 135 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 187
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 188 GLCRIWD 194

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 68  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 177 GLCRIWD 183

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 67  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 122
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 123 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 175
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 176 GLCRIWD 182

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 63  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 118
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 119 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 171
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 172 GLCRIWD 178

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 68  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 123
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 124 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 176
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 177 GLCRIWD 183

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 58  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 113
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 114 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 166
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 167 GLCRIWD 173

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 62  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 170
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 171 GLCRIWD 177

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 62  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 117
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 118 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 170
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 171 GLCRIWD 177

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 61  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 116
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 117 QSNLIVSGSFDESVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 169
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 170 GLCRIWD 176

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           +GH+  + DV +  S +    S  DD  L +WD  V +   +K  K H   + C ++NP 
Sbjct: 65  SGHKLGISDVAW-SSDSNLLVSASDDKTLKIWD--VSSGKCLKTLKGHSNYVFCCNFNP- 120
Query: 335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED 394
             NLI++GS D SVR++D +       G  +     HS  V  V ++ D S +  SS+ D
Sbjct: 121 QSNLIVSGSFDESVRIWDVK------TGMCLKTLPAHSDPVSAVHFNRDGSLIV-SSSYD 173
Query: 395 GLLNIWD 401
           GL  IWD
Sbjct: 174 GLCRIWD 180

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 49/259 (18%)
Query: 154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS 213
           + +A+ +D   V +W      NR+  L  T       LTGH  +    +A  P    + S
Sbjct: 357 QTIASASDDKTVKLW------NRNGQLLQT-------LTGHSSSVR-GVAFSPDGQTIAS 402
Query: 214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGN-DKAADGPSVGPRG 272
              DK+V LW+    +  + T        G S S+   +  P D     A+D  +V    
Sbjct: 403 ASDDKTVKLWNRNGQLLQTLT--------GHSSSVWGVAFSPDDQTIASASDDKTVK--- 451
Query: 273 IYN----------GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH 322
           ++N          GH  +V  V F P   Q   S  DD  + LW+ R G   +++    H
Sbjct: 452 LWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGH 507
Query: 323 DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP 382
            + +  V ++P D   I + S D +V++++R        G  +    GHS++V  V +SP
Sbjct: 508 SSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSP 559
Query: 383 DKSSVFGSSAEDGLLNIWD 401
           D  ++  S++ D  + +W+
Sbjct: 560 DGQTI-ASASSDKTVKLWN 577

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Query: 268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH 327
           V  R     H  +V  V F P   Q   S  DD  + LW+ R G   +++    H + + 
Sbjct: 6   VKERNRLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWN-RNG--QLLQTLTGHSSSVW 61
Query: 328 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 387
            V ++P D   I + S D +V++++R        G  +    GHS++V  V +SPD  ++
Sbjct: 62  GVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 388 FGSSAEDGLLNIWD 401
             S+++D  + +W+
Sbjct: 114 -ASASDDKTVKLWN 126

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI---KVEKAHDADLHCV 329
           +  GH+       + P       +   D   +LWD   G    I   +    H AD+  +
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFG 389
             N L+ N+ ++GS D +VR++D R +TS  V      + GH   +  V++ PD    FG
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDLR-ITSRAV----RTYHGHEGDINSVKFFPDGQR-FG 265
Query: 390 SSAEDGLLNIWDYEKVGKKVE 410
           + ++DG   ++D  + G +++
Sbjct: 266 TGSDDGTCRLFDM-RTGHQLQ 285

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 87/215 (40%), Gaps = 23/215 (10%)
Query: 190 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATD---PATAKSAGSSG 246
           ILTGH  +    L +   E  +++G  D +V +W +      +       A      ++G
Sbjct: 168 ILTGHTGSV---LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 224
Query: 247 SIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILW 306
            ++  S          A    +  R +  GH   V  V F     +   S   D  + +W
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW 281
Query: 307 DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN 366
           +    T   ++    H   + C+ +    D L+++GS+DN++R++D         G+ + 
Sbjct: 282 NT--STCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIE------CGACLR 330
Query: 367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
             EGH   V C+++   +     S A DG + +WD
Sbjct: 331 VLEGHEELVRCIRFDNKR---IVSGAYDGKIKVWD 362

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 333
           + GH   V  V F P + Q   S G D+ L +W+ + G         AH   + CV ++P
Sbjct: 105 FLGHTKDVLSVAFSPDNRQ-IVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSP 162
Query: 334 -LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392
            LD  +I++G  DN V+++D         G  +   +GH+  V  V  SPD  S+  SS 
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDL------ATGRLVTDLKGHTNYVTSVTVSPD-GSLCASSD 215
Query: 393 EDGLLNIWDYEK 404
           +DG+  +WD  K
Sbjct: 216 KDGVARLWDLTK 227

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 50/215 (23%)
Query: 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 260
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 321 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 380 WSPDKSSVFGSSAEDGLLNIWDYE--KVGKKVEQG 412
           + P    +  S +EDG L IW+    KV K +  G
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 50/215 (23%)
Query: 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 260
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 321 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAV 235
Query: 380 WSPDKSSVFGSSAEDGLLNIWDYE--KVGKKVEQG 412
           + P    +  S +EDG L IW+    KV K +  G
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWNSSTYKVEKTLNVG 269

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 260
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 321 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 380 WSPDKSSVFGSSAEDGLLNIWD 401
           + P    +  S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 48/202 (23%)
Query: 201 ALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 260
           ++A+ PT+PYVLSG  D +V LW+ +++     T                          
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------------------------- 135
Query: 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK 320
                        + GHE  V  V F P     F S   D  + +W     T P   +  
Sbjct: 136 -------------FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-PNFTLTT 181
Query: 321 AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379
             +  ++ VD+ PL D   ++T S D +++++D +        S +   EGH + V    
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------TKSCVATLEGHMSNVSFAV 235
Query: 380 WSPDKSSVFGSSAEDGLLNIWD 401
           + P    +  S +EDG L IW+
Sbjct: 236 FHPTLPIII-SGSEDGTLKIWN 256

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 14/179 (7%)
Query: 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAHD-ADLHC 328
           R I N    T+  VTF  +   E  +V     L +WD R  G  P   +    D   LHC
Sbjct: 184 RTIDNADSSTLHAVTFLRTP--EILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHC 241
Query: 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVF 388
           VD +P   +++ TG  D  + ++D R  T      P++  + H A +  V + P      
Sbjct: 242 VDRHPNQQHVVATGGQDGMLSIWDVRQGTM-----PVSLLKAHEAEMWEVHFHPSNPEHL 296
Query: 389 GSSAEDGLLNIWDYE----KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP 443
            + +EDG L  WD      +      QG R++ + +      A     V+   W ++DP
Sbjct: 297 FTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQANVHQSVIS-SWLSTDP 354

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN 359
           DS L LW      S         D+  + +DW+   +N I+ G+ DN        N  +N
Sbjct: 44  DSSLELWSLLAADSEKPIASLQVDSKFNDLDWS--HNNKIIAGALDNGSLELYSTNEANN 101
Query: 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP 419
            + S + +F  HS++V  V+++  + +V  S   +G + IWD      K  + P  +NY 
Sbjct: 102 AINS-MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM----NKCTESP--SNYT 154
Query: 420 AGLFFQHAGHRDKVVDFHWNAS 441
                Q     D+V+   WN S
Sbjct: 155 PLTPGQSMSSVDEVISLAWNQS 176

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 40/198 (20%)
Query: 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG 269
           Y+LSGG D  +VL+ +++   SS     T K+  S G                 D P V 
Sbjct: 58  YMLSGGSDGVIVLYDLEN---SSRQSYYTCKAVCSIGR----------------DHPDV- 97
Query: 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVEKAHDADLHC 328
                  H  +VE V + P     F S   D  L +WD   + T+ V   E+     ++ 
Sbjct: 98  -------HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET----VYS 146
Query: 329 VDWNPLDDN--LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 386
              +P+     L+  G+    V++ D ++      GS  +  +GH   +L V WSP    
Sbjct: 147 HHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCSHILQGHRQEILAVSWSPRYDY 200
Query: 387 VFGSSAEDGLLNIWDYEK 404
           +  +++ D  + +WD  +
Sbjct: 201 ILATASADSRVKLWDVRR 218

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 318 VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN------LTSNGVGSPINKF-EG 370
           VE+ H   ++ +D  P++   +L+G +D  + ++D  N       T   V S      + 
Sbjct: 38  VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV 97
Query: 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
           H  +V  VQW P  + +F SS+ D  L +WD
Sbjct: 98  HRYSVETVQWYPHDTGMFTSSSFDKTLKVWD 128

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 36/191 (18%)
Query: 277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD 336
           H+D V  V+   S  Q   S   D C+ +WD  +    V+   +AH A + CV  +P  D
Sbjct: 126 HDDIVSTVSVLSSGTQAV-SGSKDICIKVWD--LAQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 337 NLILTGSADNSVRMFDRRN-LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG 395
           ++ L+ S DN + ++D R    ++ +G     +   S A     W P +S VF    E+G
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA-----WHPQQSEVFVFGDENG 237
Query: 396 LLNIWDYEKVGKKVEQG------------PRTTNYPAGL---------------FFQHAG 428
            +++ D +     +               P +  + A L                F+   
Sbjct: 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA 297
Query: 429 HRDKVVDFHWN 439
           HRD V D  W+
Sbjct: 298 HRDFVRDATWS 308

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHC 328
           G   G    +  V F PS      S  DD+ + +++      P  K +     H   +H 
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-----PPFKFKSTFGEHTKFVHS 195
Query: 329 VDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLCVQWSPDKSSV 387
           V +NP D +L  +   D ++ +++  + T  GV    + K   HS +V  + WSPD + +
Sbjct: 196 VRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 388 FGSSAEDGLLNIWDYE--KVGKKVEQGPRTTNYPAGLF 423
             +SA D  + IW+    KV K +  G R  +   G+ 
Sbjct: 255 ASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGII 291

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 20/137 (14%)
Query: 294 FCSVGDDSCLILWDARVGTSPVI-------KVEK------AHDADLHCVDWNPLDDNLIL 340
           FC+V      ++ +A  G + ++       +V+K       H A +  + W P +DN+I 
Sbjct: 39  FCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIA 98
Query: 341 TGSADNSVRMFDRRNLTSNGVGSPINK----FEGHSAAVLCVQWSPDKSSVFGSSAEDGL 396
           +GS D +V +++   +   G+  P+ +     EGH+  V  V W P   +V  S+  D +
Sbjct: 99  SGSEDCTVMVWE---IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Query: 397 LNIWDYEKVGKKVEQGP 413
           + +WD       +  GP
Sbjct: 156 ILVWDVGTGAAVLTLGP 172

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 276 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 335 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 382
           +   L+L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 383 -DKSSVFGSSAEDGLLNIWDY 402
             +S  F +   D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 20/137 (14%)
Query: 294 FCSVGDDSCLILWDARVGTSPVI-------KVEK------AHDADLHCVDWNPLDDNLIL 340
           FC+V      ++ +A  G + ++       +V+K       H A +  + W P +DN+I 
Sbjct: 39  FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIA 98
Query: 341 TGSADNSVRMFDRRNLTSNGVGSPINK----FEGHSAAVLCVQWSPDKSSVFGSSAEDGL 396
           +GS D +V +++   +   G+  P+ +     EGH+  V  V W P   +V  S+  D +
Sbjct: 99  SGSEDCTVMVWE---IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 397 LNIWDYEKVGKKVEQGP 413
           + +WD       +  GP
Sbjct: 156 ILVWDVGTGAAVLTLGP 172

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 276 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 53  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 112
Query: 335 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 382
           +   L+L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 113 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 168
Query: 383 -DKSSVFGSSAEDGLLNIWDY 402
             +S  F +   D L+ IW Y
Sbjct: 169 TKESRKFVTGGADNLVKIWKY 189

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 276 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 335 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 382
           +   ++L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 111 EYGPMLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 383 -DKSSVFGSSAEDGLLNIWDY 402
             +S  F +   D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331
           G   GH   V  + +  S   +  S G+D+ + +WDAR       K    H+A +  V W
Sbjct: 211 GTLQGHSSEVCGLAW-RSDGLQLASGGNDNVVQIWDARSSIPKFTKTN--HNAAVKAVAW 267
Query: 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 391
            P   NL+ TG       M  + +  +   G+ +N  +  S  V  + WSP    +  + 
Sbjct: 268 CPWQSNLLATGGGT----MDKQIHFWNAATGARVNTVDAGS-QVTSLIWSPHSKEIMSTH 322
Query: 392 A-EDGLLNIWDYEKVG 406
              D  L+IW Y   G
Sbjct: 323 GFPDNNLSIWSYSSSG 338

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD----------ARVGTSP----VIKVEKA 321
           GHE TV  + F PS  Q   S  DD  + +W           A  G+ P    +  +   
Sbjct: 192 GHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250
Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDR---RNLTSNGVGSPINKFEGHSAAVLCV 378
           H   ++ + W  L   L  T   D+++R+F      +          +  + HS  V CV
Sbjct: 251 HSRTIYDIAWCQLTGALA-TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 379 QWSPDKSSVFGSSAEDGLLNIWDYEK 404
            W+P +  +  S ++DG +  W Y++
Sbjct: 310 AWNPKEPGLLASCSDDGEVAFWKYQR 335

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 202 LAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 260
           +A  P  P  +LS  +DK++++W +    T+                             
Sbjct: 21  IATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------------------- 54
Query: 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVE 319
                    P+    GH   V DV    SS  +F   G  D  L LWD   GT+    V 
Sbjct: 55  ---------PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV- 102
Query: 320 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379
             H  D+  V ++  D+  I++GS D ++++++     + GV     + E HS  V CV+
Sbjct: 103 -GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 155
Query: 380 WSPDKSS-VFGSSAEDGLLNIWD 401
           +SP+ S+ +  S   D L+ +W+
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWN 178

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 330
           R +   H D V    F     Q   S G D  L ++ A  G   ++ + KAH+ ++ C  
Sbjct: 615 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 671
Query: 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 388
           ++  DD+ I T SAD  V+++D      +  G  ++ ++ HS  V C  ++ +KS+  + 
Sbjct: 672 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 723
Query: 389 GSSAEDGLLNIWDYEK 404
            + + D  L +WD  +
Sbjct: 724 ATGSNDFFLKLWDLNQ 739

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVD 330
           R +   H D V    F     Q   S G D  L ++ A  G   ++ + KAH+ ++ C  
Sbjct: 608 RLVVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETG-EKLLDI-KAHEDEVLCCA 664
Query: 331 WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS--VF 388
           ++  DD+ I T SAD  V+++D      +  G  ++ ++ HS  V C  ++ +KS+  + 
Sbjct: 665 FSS-DDSYIATCSADKKVKIWD------SATGKLVHTYDEHSEQVNCCHFT-NKSNHLLL 716
Query: 389 GSSAEDGLLNIWDYEK 404
            + + D  L +WD  +
Sbjct: 717 ATGSNDFFLKLWDLNQ 732

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 48/203 (23%)
Query: 202 LAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND 260
           +A  P  P  +LS  +DK++++W +    T+                             
Sbjct: 44  IATTPQFPDMILSASRDKTIIMWKLTRDETNYGI-------------------------- 77
Query: 261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-DSCLILWDARVGTSPVIKVE 319
                    P+    GH   V DV    SS  +F   G  D  L LWD   GT+    V 
Sbjct: 78  ---------PQRALRGHSHFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFV- 125
Query: 320 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379
             H  D+  V ++  D+  I++GS D ++++++     + GV     + E HS  V CV+
Sbjct: 126 -GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN-----TLGVCKYTVQDESHSEWVSCVR 178
Query: 380 WSPDKSS-VFGSSAEDGLLNIWD 401
           +SP+ S+ +  S   D L+ +W+
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWN 201

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 332
           +  GH+D V  +T          S  DD+ L +W A  G    ++    H   +    W+
Sbjct: 113 VLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGV----WS 164
Query: 333 P-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 391
             + DN+I++GS D ++++++         G  I+   GH++ V C+    +K  V GS 
Sbjct: 165 SQMRDNIIISGSTDRTLKVWNAET------GECIHTLYGHTSTVRCMHLH-EKRVVSGS- 216
Query: 392 AEDGLLNIWDYE 403
             D  L +WD E
Sbjct: 217 -RDATLRVWDIE 227

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 276 GHEDTVEDVTFC-PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL 334
           GHE  V  V +  P       S   D  +++W    G    I V   H A ++ V W P 
Sbjct: 51  GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
Query: 335 DDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP----------- 382
           +   L+L  S+D  V + + +    NG  SPI   + H+  V    W+P           
Sbjct: 111 EYGPLLLVASSDGKVSVVEFKE---NGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNG 166
Query: 383 -DKSSVFGSSAEDGLLNIWDY 402
             +S  F +   D L+ IW Y
Sbjct: 167 TKESRKFVTGGADNLVKIWKY 187

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 63/170 (37%), Gaps = 24/170 (14%)
Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWN 332
           YN H   V  V  CP     F S G+D  ++LWD R    P  +++  A D     V W+
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR-KPKPATRIDFCASDTIPTSVTWH 235
Query: 333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA 392
           P  D+    G    +V + + +N  S    +       HS  +  + +S   S    S +
Sbjct: 236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAV------HSQNITGLAYSYHSSPFLASIS 289
Query: 393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD 442
           ED  + + D +                    F+   HRD V    W+  D
Sbjct: 290 EDCTVAVLDAD----------------FSEVFRDLSHRDFVTGVAWSPLD 323

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.98
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.89
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.82
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.71
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.7
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.7
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.68
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.67
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.65
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.64
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.63
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.59
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.57
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.51
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.51
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.5
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.49
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.46
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.45
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.44
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.41
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.41
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.39
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.38
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.33
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.32
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.31
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.31
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.3
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.29
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.28
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.28
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.24
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.23
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.16
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.16
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.15
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.11
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.09
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.08
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.06
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.02
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.01
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.98
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.91
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.89
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.83
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.82
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.78
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.78
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.73
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.68
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.67
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.63
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.62
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.61
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.59
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.58
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.58
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.51
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.51
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.49
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.49
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.49
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.47
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.44
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.44
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.42
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.41
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.4
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.37
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.36
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.35
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.31
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.31
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.3
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.29
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.26
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.26
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.23
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.19
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.17
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.17
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.14
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.13
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.12
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.03
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.98
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.91
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.85
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.85
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.82
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.78
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.78
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.75
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.71
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.65
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.63
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.56
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.5
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.46
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.44
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.43
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.41
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.41
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.39
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.38
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.35
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.31
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.3
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.3
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.2
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.19
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.15
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.07
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.98
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.68
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.63
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.62
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.6
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.42
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.36
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.25
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.15
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.8
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.69
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.69
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.59
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.57
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.21
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.17
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.85
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.63
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.62
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.57
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.42
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.39
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.16
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.77
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.67
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	93.55
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.5
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.98
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.76
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	92.75
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.23
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	91.7
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.28
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	87.5
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.05
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	83.82
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.42
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	81.6

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2e-57  Score=449.41  Aligned_cols=390  Identities=34%  Similarity=0.661  Sum_probs=304.1

Q ss_pred             hhccccchhhhhccccCChhHhHhhhhCcCCCCcceEeccCCcccC--CCcceEEEEEEeecCCCCCCeEEEEEEeccCc
Q 010997           34 TAHQHAVDDKYTHWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQA--TYKNRQRLYLSEQTDGSVPNTLVIANCEVVKP  111 (496)
Q Consensus        34 ~~~~~~~~~~~~~w~~~~~~ly~~~~~~~~~wps~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~  111 (496)
                      +.+++.++|+|++||||+|+||+++++|.++||+|+++|+|.....  .....+++++||++++ ..|.|+|+++.++..
T Consensus        15 ~~~~~~~~~~~~~wk~n~~~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~-~~n~i~i~~~~lp~~   93 (430)
T 2xyi_A           15 AVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD-EQNHLLIASVQLPSE   93 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHEEEEEEEECSSCCSCEEECSCCEECTTCSCEEEEEEEECCCSS-SCEEEEEEEEEEC--
T ss_pred             chhhhhhhHHHhhHhhCChHHHHHHhhcCCCCCceEEEECcccccccCCCcceEEEEEEEcCCC-CCCEEEEEEEECCCC
Confidence            4467889999999999999999999999999999999999985432  2234699999999998 999999999887543


Q ss_pred             chhhhccccccCcc--------cCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCC
Q 010997          112 RVAAAEHISQFNEE--------ARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGAT  183 (496)
Q Consensus       112 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~  183 (496)
                      ..  ......++++        ...+.++....+.|.+.|++++|+|+++.+||+++.||.|+|||+.........  ..
T Consensus        94 ~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~--~~  169 (430)
T 2xyi_A           94 DA--QFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP--SG  169 (430)
T ss_dssp             --------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT--TC
T ss_pred             cc--ccccccccccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc--cc
Confidence            21  1111112221        234556678889999999999999966889999999999999999874222110  11


Q ss_pred             CCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCC
Q 010997          184 NSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKA  262 (496)
Q Consensus       184 ~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (496)
                      ...+...+.+|.. .|++++|+|++. +|++|+.||.|++||+.......                              
T Consensus       170 ~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------------------------------  218 (430)
T 2xyi_A          170 ECQPDLRLRGHQK-EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH------------------------------  218 (430)
T ss_dssp             CCCCSEEEECCSS-CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG------------------------------
T ss_pred             cCCCcEEecCCCC-CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC------------------------------
Confidence            2367788999988 689999999988 99999999999999998632110                              


Q ss_pred             CCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC-ccceeeeccCCCCeEEEEecCCCCcEEEE
Q 010997          263 ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDWNPLDDNLILT  341 (496)
Q Consensus       263 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~i~~sp~~~~~l~s  341 (496)
                         ....+...+.+|...|.+++|+|++..+|++++.||.|++||+++.. ......+..|...|++++|+|....+|++
T Consensus       219 ---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~t  295 (430)
T 2xyi_A          219 ---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT  295 (430)
T ss_dssp             ---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred             ---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEE
Confidence               00112356778999999999999666899999999999999999873 12445566899999999999944458999


Q ss_pred             EcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCe
Q 010997          342 GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAG  421 (496)
Q Consensus       342 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  421 (496)
                      |+.||.|++||+++.     ..++..+..|...|.+++|+|++..+|++++.|+.|+|||+...+..+..... ...++.
T Consensus       296 g~~dg~v~vwd~~~~-----~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~  369 (430)
T 2xyi_A          296 GSADKTVALWDLRNL-----KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA-EDGPPE  369 (430)
T ss_dssp             EETTSEEEEEETTCT-----TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH-HHCCTT
T ss_pred             EeCCCeEEEEeCCCC-----CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc-ccCCcc
Confidence            999999999999974     35788999999999999999999888999999999999999875332211100 124457


Q ss_pred             eEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCc
Q 010997          422 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ  475 (496)
Q Consensus       422 ~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~  475 (496)
                      +++.+.+|...|++++|+|++++++++++.|       |.|+||++...++.+.
T Consensus       370 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d-------g~i~iw~~~~~~~~~~  416 (430)
T 2xyi_A          370 LLFIHGGHTAKISDFSWNPNEPWIICSVSED-------NIMQVWQMAENVYNDE  416 (430)
T ss_dssp             EEEECCCCSSCEEEEEECSSSTTEEEEEETT-------SEEEEEEECHHHHCC-
T ss_pred             eEEEcCCCCCCceEEEECCCCCCEEEEEECC-------CCEEEeEcccccccCC
Confidence            8899999999999999999999888877765       9999999986655433

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.5e-44  Score=350.60  Aligned_cols=270  Identities=20%  Similarity=0.372  Sum_probs=241.5

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..+.+|.++|++++|+| ++.+||+|+.||+|+|||+.++            +....+.+|.+ .|.+++|+|++++|++
T Consensus       102 ~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~------------~~~~~l~~h~~-~V~~v~~~~~~~~l~s  167 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETG------------DFERTLKGHTD-SVQDISFDHSGKLLAS  167 (410)
T ss_dssp             CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTC------------CCCEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred             EeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEEeccCC-cEEEEEEcCCCCEEEE
Confidence            45679999999999999 8889999999999999999988            56778999998 6999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.||+|++||+.+..                                        .+..+.+|...|.+++|+|++ .+
T Consensus       168 gs~D~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~V~~v~~~p~~-~~  206 (410)
T 1vyh_C          168 CSADMTIKLWDFQGFE----------------------------------------CIRTMHGHDHNVSSVSIMPNG-DH  206 (410)
T ss_dssp             EETTSCCCEEETTSSC----------------------------------------EEECCCCCSSCEEEEEECSSS-SE
T ss_pred             EeCCCeEEEEeCCCCc----------------------------------------eeEEEcCCCCCEEEEEEeCCC-CE
Confidence            9999999999987532                                        235677899999999999998 78


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      |++|+.|++|++||++++.  ....+.+|...|.+++|+| ++.+|++|+.||.|++||+++      +.+...+.+|..
T Consensus       207 l~s~s~D~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~------~~~~~~~~~h~~  277 (410)
T 1vyh_C          207 IVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVAT------KECKAELREHRH  277 (410)
T ss_dssp             EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECCCSS
T ss_pred             EEEEeCCCeEEEEECCCCc--EEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCC------CceeeEecCCCc
Confidence            9999999999999999987  6777889999999999999 999999999999999999998      778889999999


Q ss_pred             CEEEEEEcCCC-------------------CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997          374 AVLCVQWSPDK-------------------SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  434 (496)
Q Consensus       374 ~i~~l~~sp~~-------------------~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  434 (496)
                      .|.+++|+|++                   ..+|++|+.|+.|++||++..               ..+..+.+|...|.
T Consensus       278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---------------~~~~~~~~h~~~v~  342 (410)
T 1vyh_C          278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---------------MCLMTLVGHDNWVR  342 (410)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEE
T ss_pred             eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---------------ceEEEEECCCCcEE
Confidence            99999999973                   226789999999999999874               56777889999999


Q ss_pred             eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          435 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       435 ~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +++|+|++.+++        +|+.||+|+|||+.      .++++.++.+|...|.+++|+|
T Consensus       343 ~v~~~~~g~~l~--------s~s~D~~i~vwd~~------~~~~~~~~~~h~~~v~~l~~~~  390 (410)
T 1vyh_C          343 GVLFHSGGKFIL--------SCADDKTLRVWDYK------NKRCMKTLNAHEHFVTSLDFHK  390 (410)
T ss_dssp             EEEECSSSSCEE--------EEETTTEEEEECCT------TSCCCEEEECCSSCEEEEEECS
T ss_pred             EEEEcCCCCEEE--------EEeCCCeEEEEECC------CCceEEEEcCCCCcEEEEEEcC
Confidence            999999888766        45556999999998      5677788899999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-43  Score=333.14  Aligned_cols=270  Identities=21%  Similarity=0.308  Sum_probs=234.0

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .+.+|.+.|++++|+| ++.+||+|+.||.|+|||+.++            .....+.+|.. .|.+++|+|++++|++|
T Consensus         8 ~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~s~   73 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQ------------VEVRSIQVTET-PVRAGKFIARKNWIIVG   73 (304)
T ss_dssp             EEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEEEGGGTEEEEE
T ss_pred             eecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC------------ceeEEeeccCC-cEEEEEEeCCCCEEEEE
Confidence            4568999999999999 8899999999999999999887            56678888887 79999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.|++|++||+.++.                                        .+..+.+|...|.+++|+|++ .+|
T Consensus        74 s~d~~i~vwd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~l  112 (304)
T 2ynn_A           74 SDDFRIRVFNYNTGE----------------------------------------KVVDFEAHPDYIRSIAVHPTK-PYV  112 (304)
T ss_dssp             ETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-SEE
T ss_pred             CCCCEEEEEECCCCc----------------------------------------EEEEEeCCCCcEEEEEEcCCC-CEE
Confidence            999999999997543                                        236788999999999999998 789


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSA  373 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~  373 (496)
                      ++|+.|++|++||++++.. ....+.+|...|.+++|+|.++.+|++|+.||+|++||++.      ..+...+ .+|..
T Consensus       113 ~sgs~D~~v~lWd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~------~~~~~~~~~~~~~  185 (304)
T 2ynn_A          113 LSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQER  185 (304)
T ss_dssp             EEEETTSCEEEEEGGGTTE-EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC------SSCSEEEECCCTT
T ss_pred             EEECCCCeEEEEECCCCcc-hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC------CCccceeccCCcC
Confidence            9999999999999987752 45567799999999999996678999999999999999987      4455444 45678


Q ss_pred             CEEEEEEcC--CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997          374 AVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       374 ~i~~l~~sp--~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      .|..+.|+|  ++. +|++|+.|+.|++||++..               .++..+.+|...|..++|+|+++. ++|   
T Consensus       186 ~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~-l~s---  245 (304)
T 2ynn_A          186 GVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTK---------------SCVATLEGHMSNVSFAVFHPTLPI-IIS---  245 (304)
T ss_dssp             CEEEEEECCSTTCC-EEEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECSSSSE-EEE---
T ss_pred             cEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCCCC---------------ccceeeCCCCCCEEEEEECCCCCE-EEE---
Confidence            899999987  455 5789999999999999874               567788999999999999998875 554   


Q ss_pred             CCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          452 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                          |+.||+|+|||+.      +++++.++..|...+.+++|+|
T Consensus       246 ----~s~Dg~i~iWd~~------~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          246 ----GSEDGTLKIWNSS------TYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             ----EETTSCEEEEETT------TCCEEEEECCSSSSEEEEEECT
T ss_pred             ----EcCCCeEEEEECC------CCceeeeccCCCccEEEEEECC
Confidence                4455999999998      6777788889999999999887

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-43  Score=334.76  Aligned_cols=270  Identities=17%  Similarity=0.305  Sum_probs=234.3

Q ss_pred             EecCCCceeEEEecCC---CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          136 TIIHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~---~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      ..+|.+.|++++|+|.   ++.+||||+.|++|+|||+....          ......+.+|.. .|.+++|++++.+++
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~----------~~~~~~l~gh~~-~v~~~~~~~~~~~l~   96 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER----------LDLQWSLEGHQL-GVVSVDISHTLPIAA   96 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE----------EEEEEEECCCSS-CEEEEEECSSSSEEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC----------eeeeeeeccCCC-CEEEEEECCCCCEEE
Confidence            3589999999999983   46799999999999999987651          123456889998 699999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.|++|++||+.++..                                        +..+..|...+.+++|+|++ .
T Consensus        97 s~s~D~~i~lWd~~~~~~----------------------------------------~~~~~~~~~~~~~~~~spdg-~  135 (321)
T 3ow8_A           97 SSSLDAHIRLWDLENGKQ----------------------------------------IKSIDAGPVDAWTLAFSPDS-Q  135 (321)
T ss_dssp             EEETTSEEEEEETTTTEE----------------------------------------EEEEECCTTCCCCEEECTTS-S
T ss_pred             EEeCCCcEEEEECCCCCE----------------------------------------EEEEeCCCccEEEEEECCCC-C
Confidence            999999999999975432                                        35667788889999999999 7


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      +|++++.||.|++||++++.  ....+..|...|.+++|+| ++.+|++|+.||.|++||+++      +..+..+.+|.
T Consensus       136 ~l~~g~~dg~v~i~~~~~~~--~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~h~  206 (321)
T 3ow8_A          136 YLATGTHVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT------GKLLHTLEGHA  206 (321)
T ss_dssp             EEEEECTTSEEEEEETTTCS--EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCCS
T ss_pred             EEEEEcCCCcEEEEEcCCCc--eeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEcccC
Confidence            99999999999999999887  5566678889999999999 999999999999999999998      78899999999


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      .+|.+++|+|++. +|++|+.|+.|+|||++..               .+...+.+|...|.+++|+|++.++ +     
T Consensus       207 ~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~---------------~~~~~~~~h~~~v~~~~~sp~~~~l-~-----  264 (321)
T 3ow8_A          207 MPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHA---------------NLAGTLSGHASWVLNVAFCPDDTHF-V-----  264 (321)
T ss_dssp             SCCCEEEECTTSC-EEEEECTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSEE-E-----
T ss_pred             CceeEEEEcCCCC-EEEEEcCCCeEEEEECCCc---------------ceeEEEcCCCCceEEEEECCCCCEE-E-----
Confidence            9999999999998 5789999999999999874               4566788999999999999988765 4     


Q ss_pred             CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                        +|+.|++|+|||+.      +++++.++.+|.+.|.+++|+|
T Consensus       265 --s~s~D~~v~iwd~~------~~~~~~~~~~h~~~v~~v~~s~  300 (321)
T 3ow8_A          265 --SSSSDKSVKVWDVG------TRTCVHTFFDHQDQVWGVKYNG  300 (321)
T ss_dssp             --EEETTSCEEEEETT------TTEEEEEECCCSSCEEEEEECT
T ss_pred             --EEeCCCcEEEEeCC------CCEEEEEEcCCCCcEEEEEECC
Confidence              44455999999998      6778888999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.6e-42  Score=331.08  Aligned_cols=256  Identities=20%  Similarity=0.306  Sum_probs=214.0

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      .....|...|++++|+| ++ .|++|+.||+|+|||+.++....        .....+.+|.+ .|++++|+|++++|++
T Consensus        76 ~~~~~~~~~v~~~~~s~-d~-~l~~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~H~~-~V~~v~~spdg~~l~s  144 (344)
T 4gqb_B           76 SAGVQTEAGVADLTWVG-ER-GILVASDSGAVELWELDENETLI--------VSKFCKYEHDD-IVSTVSVLSSGTQAVS  144 (344)
T ss_dssp             SEEEEESSCEEEEEEET-TT-EEEEEETTSEEEEEEECTTSSCE--------EEEEEEECCSS-CEEEEEECTTSSEEEE
T ss_pred             eeeeccCCCEEEEEEeC-CC-eEEEEECCCEEEEEeccCCCcee--------EeeccccCCCC-CEEEEEECCCCCEEEE
Confidence            34567888999999999 54 67899999999999998873211        12234568987 7999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.||+|++||++++.                                        .+..+.+|...|.+++|+|++..+
T Consensus       145 gs~d~~i~iwd~~~~~----------------------------------------~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          145 GSKDICIKVWDLAQQV----------------------------------------VLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             EETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECSSCTTE
T ss_pred             EeCCCeEEEEECCCCc----------------------------------------EEEEEcCcCCceEEEEecCCCCCc
Confidence            9999999999997543                                        246788999999999999998778


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      |++|+.|++|++||+++++.........+...+++++|+|.++.+|++|+.||.|+|||+++      ++++.++.+|..
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~------~~~~~~~~~h~~  258 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS------TSCVLSSAVHSQ  258 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSS
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC------CcEEEEEcCCCC
Confidence            99999999999999998873222222456678999999996778999999999999999998      789999999999


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  453 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~  453 (496)
                      .|++++|+|++..+||+|+.|+.|+|||+...                .+..+.+|.+.|++++|+|++..+++|++.| 
T Consensus       259 ~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~----------------~~~~~~~H~~~V~~v~~sp~~~~llas~s~D-  321 (344)
T 4gqb_B          259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS----------------ELFRSQAHRDFVRDATWSPLNHSLLTTVGWD-  321 (344)
T ss_dssp             CEEEEEECSSSSCCEEEEETTSCEEEECTTCC----------------EEEEECCCSSCEEEEEECSSSTTEEEEEETT-
T ss_pred             CEEEEEEccCCCeEEEEEeCCCeEEEEECCCC----------------cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCC-
Confidence            99999999998767889999999999999873                3445789999999999999999999876665 


Q ss_pred             CCCCCCCeEEEeecCC
Q 010997          454 DSTGGGGTLQIWRMSD  469 (496)
Q Consensus       454 ~sgg~Dg~i~iw~~~~  469 (496)
                            |+|++|++..
T Consensus       322 ------~~v~~w~v~~  331 (344)
T 4gqb_B          322 ------HQVVHHVVPT  331 (344)
T ss_dssp             ------SCEEEEECCC
T ss_pred             ------CeEEEEECCC
Confidence                  9999999984

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.1e-42  Score=329.69  Aligned_cols=275  Identities=16%  Similarity=0.298  Sum_probs=234.4

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      ...+.+|.+.|++++|+| ++++||+|+.||+|+|||+.+.            .....+..|.. .|.+++|+|++++|+
T Consensus        48 ~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~  113 (340)
T 1got_B           48 RRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTT------------NKVHAIPLRSS-WVMTCAYAPSGNYVA  113 (340)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEECSSS-CEEEEEECTTSSEEE
T ss_pred             heeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCC------------CcceEeecCCc-cEEEEEECCCCCEEE
Confidence            345678999999999999 8899999999999999999887            55677888887 699999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.|+.|++|++.+...                                    .......+.+|.+.|.++.|++++  
T Consensus       114 s~~~d~~v~iw~~~~~~~------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~--  155 (340)
T 1got_B          114 CGGLDNICSIYNLKTREG------------------------------------NVRVSRELAGHTGYLSCCRFLDDN--  155 (340)
T ss_dssp             EEETTCEEEEEETTTCSB------------------------------------SCEEEEEEECCSSCEEEEEEEETT--
T ss_pred             EEeCCCeEEEEECccCCC------------------------------------cceeEEEecCCCccEEEEEECCCC--
Confidence            999999999999875321                                    112235678999999999999887  


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      .+++++.|++|++||++++.  ....+.+|...|.+++|+| ++.+|++|+.||.|++||+++      +.++..+.+|.
T Consensus       156 ~l~s~s~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~------~~~~~~~~~h~  226 (340)
T 1got_B          156 QIVTSSGDTTCALWDIETGQ--QTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE------GMCRQTFTGHE  226 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CSEEEEECCCS
T ss_pred             cEEEEECCCcEEEEECCCCc--EEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCC------CeeEEEEcCCc
Confidence            48999999999999999887  5677789999999999999 899999999999999999998      78889999999


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      ..|.+++|+|++. +|++|+.||.|++||++....             ...+.+..+...|.+++|+|++.+++      
T Consensus       227 ~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~-------------~~~~~~~~~~~~v~~~~~s~~g~~l~------  286 (340)
T 1got_B          227 SDINAICFFPNGN-AFATGSDDATCRLFDLRADQE-------------LMTYSHDNIICGITSVSFSKSGRLLL------  286 (340)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-------------EEEECCTTCCSCEEEEEECTTSSEEE------
T ss_pred             CCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcE-------------EEEEccCCcccceEEEEECCCCCEEE------
Confidence            9999999999998 568999999999999987411             11222334455799999999887655      


Q ss_pred             CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                        +|+.||.|++||+.      .++.+..+.+|.++|.+++|+|
T Consensus       287 --~g~~d~~i~vwd~~------~~~~~~~~~~h~~~v~~~~~s~  322 (340)
T 1got_B          287 --AGYDDFNCNVWDAL------KADRAGVLAGHDNRVSCLGVTD  322 (340)
T ss_dssp             --EEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEECT
T ss_pred             --EECCCCeEEEEEcc------cCcEeeEeecCCCcEEEEEEcC
Confidence              44456999999998      4566778899999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=314.58  Aligned_cols=287  Identities=18%  Similarity=0.346  Sum_probs=237.8

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      +..++.|.|.-..    ....|+     +++.+..++||+.....                   ........+|...|.+
T Consensus        34 ~V~~v~~~~~~~~----~~~~l~-----tgs~D~~v~vW~~~~~~-------------------~~~~~~l~gh~~~v~~   85 (321)
T 3ow8_A           34 AIWSVAWGTNKKE----NSETVV-----TGSLDDLVKVWKWRDER-------------------LDLQWSLEGHQLGVVS   85 (321)
T ss_dssp             CEEEEEEC-----------CEEE-----EEETTSCEEEEEEETTE-------------------EEEEEEECCCSSCEEE
T ss_pred             cEEEEEEecCCCC----CCCEEE-----EEcCCCCEEEEECCCCC-------------------eeeeeeeccCCCCEEE
Confidence            5668888874211    112332     34578899999864211                   0112345689999999


Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI  225 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~  225 (496)
                      ++|+| ++.++|+++.|++|++||+.++            +....+..|.. .+.+++|+|++++|++|+.||.|++||+
T Consensus        86 ~~~~~-~~~~l~s~s~D~~i~lWd~~~~------------~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           86 VDISH-TLPIAASSSLDAHIRLWDLENG------------KQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             EEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred             EEECC-CCCEEEEEeCCCcEEEEECCCC------------CEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence            99999 8889999999999999999887            55667788876 5889999999999999999999999999


Q ss_pred             CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997          226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL  305 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  305 (496)
                      +++..                                        ...+..|...|.+++|+|++ .+|++|+.||.|++
T Consensus       152 ~~~~~----------------------------------------~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~i  190 (321)
T 3ow8_A          152 ESGKK----------------------------------------EYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINI  190 (321)
T ss_dssp             TTCSE----------------------------------------EEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred             CCCce----------------------------------------eEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEE
Confidence            75432                                        25567788899999999999 79999999999999


Q ss_pred             EEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCC
Q 010997          306 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS  385 (496)
Q Consensus       306 wd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~  385 (496)
                      ||+++++  ....+.+|...|++++|+| ++.+|++|+.||.|++||++.      +..+..+.+|...|.+++|+|++.
T Consensus       191 wd~~~~~--~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~v~~~~~sp~~~  261 (321)
T 3ow8_A          191 FDIATGK--LLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQH------ANLAGTLSGHASWVLNVAFCPDDT  261 (321)
T ss_dssp             EETTTTE--EEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTT------CCEEEEECCCSSCEEEEEECTTSS
T ss_pred             EECCCCc--EEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCC------cceeEEEcCCCCceEEEEECCCCC
Confidence            9999887  6677789999999999999 999999999999999999998      778889999999999999999998


Q ss_pred             CEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEe
Q 010997          386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW  465 (496)
Q Consensus       386 ~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw  465 (496)
                      + |++++.|+.|+|||+...               .++..+.+|...|.+++|+|++..+ ++       +|.||+|+||
T Consensus       262 ~-l~s~s~D~~v~iwd~~~~---------------~~~~~~~~h~~~v~~v~~s~~g~~l-~s-------~~~d~~i~vw  317 (321)
T 3ow8_A          262 H-FVSSSSDKSVKVWDVGTR---------------TCVHTFFDHQDQVWGVKYNGNGSKI-VS-------VGDDQEIHIY  317 (321)
T ss_dssp             E-EEEEETTSCEEEEETTTT---------------EEEEEECCCSSCEEEEEECTTSSEE-EE-------EETTCCEEEE
T ss_pred             E-EEEEeCCCcEEEEeCCCC---------------EEEEEEcCCCCcEEEEEECCCCCEE-EE-------EeCCCeEEEE
Confidence            4 679999999999999874               5677788999999999999988765 44       4455999999


Q ss_pred             ecC
Q 010997          466 RMS  468 (496)
Q Consensus       466 ~~~  468 (496)
                      |..
T Consensus       318 d~p  320 (321)
T 3ow8_A          318 DCP  320 (321)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.7e-41  Score=323.80  Aligned_cols=278  Identities=17%  Similarity=0.294  Sum_probs=233.1

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..+.+|.+.|++++|+| ++.+||||+.||+|+|||..+.            +....+..|.. .|.+++|+|++.+|++
T Consensus        58 ~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~------------~~~~~~~~~~~-~v~~~~~sp~g~~las  123 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTT------------NKEHAVTMPCT-WVMACAYAPSGCAIAC  123 (354)
T ss_dssp             EEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC------------CEEEEEECSSS-CCCEEEECTTSSEEEE
T ss_pred             EEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------------CcceEEecCCC-CEEEEEECCCCCEEEE
Confidence            45568999999999999 8899999999999999998877            45567777877 6899999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.|+.+++|++......                                  ........+.+|...|.+++|+|++ ..
T Consensus       124 g~~d~~i~v~~~~~~~~~----------------------------------~~~~~~~~~~~h~~~v~~~~~~~~~-~~  168 (354)
T 2pbi_B          124 GGLDNKCSVYPLTFDKNE----------------------------------NMAAKKKSVAMHTNYLSACSFTNSD-MQ  168 (354)
T ss_dssp             ESTTSEEEEEECCCCTTC----------------------------------CSGGGCEEEEECSSCEEEEEECSSS-SE
T ss_pred             eeCCCCEEEEEEeccccc----------------------------------cccccceeeeccCCcEEEEEEeCCC-CE
Confidence            999999999998643210                                  0112235677899999999999998 78


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      |++++.|++|++||+++++  ....+.+|...|.+++|+|. ++.+|++|+.||.|++||+++      +.++..+.+|.
T Consensus       169 l~t~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~------~~~~~~~~~h~  240 (354)
T 2pbi_B          169 ILTASGDGTCALWDVESGQ--LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS------GQCVQAFETHE  240 (354)
T ss_dssp             EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT------CCEEEEECCCS
T ss_pred             EEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC------CcEEEEecCCC
Confidence            9999999999999999887  67778899999999999883 358999999999999999998      78899999999


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      ..|.+++|+|++. +|++|+.|+.|++||++....             ...+....+...+.+++|+|++..++      
T Consensus       241 ~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~-------------~~~~~~~~~~~~~~~~~~s~~g~~l~------  300 (354)
T 2pbi_B          241 SDVNSVRYYPSGD-AFASGSDDATCRLYDLRADRE-------------VAIYSKESIIFGASSVDFSLSGRLLF------  300 (354)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-------------EEEECCTTCCSCEEEEEECTTSSEEE------
T ss_pred             CCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcE-------------EEEEcCCCcccceeEEEEeCCCCEEE------
Confidence            9999999999998 578999999999999987411             11222223445789999999887655      


Q ss_pred             CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                        +|+.|+.|+|||+.      .++.+..+.+|.+.|.+++|+|
T Consensus       301 --~g~~d~~i~vwd~~------~~~~~~~l~~h~~~v~~l~~sp  336 (354)
T 2pbi_B          301 --AGYNDYTINVWDVL------KGSRVSILFGHENRVSTLRVSP  336 (354)
T ss_dssp             --EEETTSCEEEEETT------TCSEEEEECCCSSCEEEEEECT
T ss_pred             --EEECCCcEEEEECC------CCceEEEEECCCCcEEEEEECC
Confidence              44456999999997      5666777889999999999998

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.4e-41  Score=333.48  Aligned_cols=247  Identities=20%  Similarity=0.386  Sum_probs=217.4

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ...+|.+.|++++|+| ++++||+|+.||+|+|||+.+.            ++...+.+|.. .|.+++|+|++++|++|
T Consensus       145 ~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~------------~~~~~~~~h~~-~V~~v~~~p~~~~l~s~  210 (410)
T 1vyh_C          145 TLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGF------------ECIRTMHGHDH-NVSSVSIMPNGDHIVSA  210 (410)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSS------------CEEECCCCCSS-CEEEEEECSSSSEEEEE
T ss_pred             EEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC------------ceeEEEcCCCC-CEEEEEEeCCCCEEEEE
Confidence            4568999999999999 8889999999999999999876            55677889988 69999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.|++|++||+.++.                                        .+..+.+|...|.++.|+|++ .+|
T Consensus       211 s~D~~i~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~g-~~l  249 (410)
T 1vyh_C          211 SRDKTIKMWEVQTGY----------------------------------------CVKTFTGHREWVRMVRPNQDG-TLI  249 (410)
T ss_dssp             ETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECTTS-SEE
T ss_pred             eCCCeEEEEECCCCc----------------------------------------EEEEEeCCCccEEEEEECCCC-CEE
Confidence            999999999997543                                        236788999999999999998 799


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC-------------------CcEEEEEcCCCcEEEEeCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD-------------------DNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~-------------------~~~l~sgs~dg~i~iwd~~~  355 (496)
                      ++|+.|++|++||++++.  ....+..|...|.+++|+|..                   +.+|++|+.||.|++||+++
T Consensus       250 ~s~s~D~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          250 ASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             EEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             EEEcCCCeEEEEECCCCc--eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999999999887  566778999999999999931                   56899999999999999998


Q ss_pred             CCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcce
Q 010997          356 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  435 (496)
Q Consensus       356 ~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  435 (496)
                            +.++..+.+|...|.+++|+|++.+ |++|+.||.|++||+...               .++..+.+|...|++
T Consensus       328 ------~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~i~vwd~~~~---------------~~~~~~~~h~~~v~~  385 (410)
T 1vyh_C          328 ------GMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNK---------------RCMKTLNAHEHFVTS  385 (410)
T ss_dssp             ------TEEEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTS---------------CCCEEEECCSSCEEE
T ss_pred             ------CceEEEEECCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC---------------ceEEEEcCCCCcEEE
Confidence                  7889999999999999999999996 569999999999999764               345567899999999


Q ss_pred             EEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ++|+|++.+++        ||+.||+|+||+++
T Consensus       386 l~~~~~~~~l~--------sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          386 LDFHKTAPYVV--------TGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECSSSSCEE--------EEETTSEEEEEC--
T ss_pred             EEEcCCCCEEE--------EEeCCCcEEEEeCC
Confidence            99999888765        55556999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.7e-42  Score=327.34  Aligned_cols=280  Identities=19%  Similarity=0.265  Sum_probs=219.2

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      .|...|.+++|+| ++.+|++++ |+++++||.................. .....|.. .|.+++|+|++ .|++|+.|
T Consensus        28 ~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~s~d~-~l~~~s~d  102 (344)
T 4gqb_B           28 CMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFC-SAGVQTEA-GVADLTWVGER-GILVASDS  102 (344)
T ss_dssp             SCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGC-SEEEEESS-CEEEEEEETTT-EEEEEETT
T ss_pred             cccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCccee-eeeeccCC-CEEEEEEeCCC-eEEEEECC
Confidence            5778899999999 888998887 66888887432100000000001111 12233444 59999999985 68899999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      |+|+|||++++....                                    .....+.+|.+.|++++|+|++ .+|++|
T Consensus       103 g~v~lWd~~~~~~~~------------------------------------~~~~~~~~H~~~V~~v~~spdg-~~l~sg  145 (344)
T 4gqb_B          103 GAVELWELDENETLI------------------------------------VSKFCKYEHDDIVSTVSVLSSG-TQAVSG  145 (344)
T ss_dssp             SEEEEEEECTTSSCE------------------------------------EEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred             CEEEEEeccCCCcee------------------------------------EeeccccCCCCCEEEEEECCCC-CEEEEE
Confidence            999999998653311                                    0113456899999999999999 799999


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec--cCCCCE
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE--GHSAAV  375 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~~~i  375 (496)
                      +.|++|++||+++++  .+..+.+|...|++++|+|.+..+|++|+.||+|++||+++      ++++..+.  .|...+
T Consensus       146 s~d~~i~iwd~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~------~~~~~~~~~~~~~~~~  217 (344)
T 4gqb_B          146 SKDICIKVWDLAQQV--VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC------PKPASQIGCSAPGYLP  217 (344)
T ss_dssp             ETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS------SSCEEECC----CCCE
T ss_pred             eCCCeEEEEECCCCc--EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc------cceeeeeecceeeccc
Confidence            999999999999887  67788899999999999994457899999999999999998      67777664  456679


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997          376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  455 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s  455 (496)
                      .+++|+|++..+||+|+.||.|+|||++..               .++..+.+|...|++++|+|++..++++++.|   
T Consensus       218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---------------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D---  279 (344)
T 4gqb_B          218 TSLAWHPQQSEVFVFGDENGTVSLVDTKST---------------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSED---  279 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEESCC-----------------CCEEEECCSSCEEEEEECSSSSCCEEEEETT---
T ss_pred             eeeeecCCCCcceEEeccCCcEEEEECCCC---------------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC---
Confidence            999999988778899999999999999874               45567789999999999999987778766665   


Q ss_pred             CCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          456 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       456 gg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                          ++|+|||+.      .+++ ..+.+|.+.|.+|+|||
T Consensus       280 ----~~i~vwd~~------~~~~-~~~~~H~~~V~~v~~sp  309 (344)
T 4gqb_B          280 ----CSLAVLDSS------LSEL-FRSQAHRDFVRDATWSP  309 (344)
T ss_dssp             ----SCEEEECTT------CCEE-EEECCCSSCEEEEEECS
T ss_pred             ----CeEEEEECC------CCcE-EEEcCCCCCEEEEEEeC
Confidence                999999998      3443 35689999999999998

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-41  Score=330.92  Aligned_cols=279  Identities=18%  Similarity=0.357  Sum_probs=230.3

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..+.+|.+.|++++|+| ++++||+|+.||+|+|||+.+.            +....+.+|.. .|.+++|+|++++|++
T Consensus        60 ~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~------------~~~~~~~~h~~-~v~~~~~s~~g~~las  125 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTS------------QKTHAIKLHCP-WVMECAFAPNGQSVAC  125 (380)
T ss_dssp             EEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTT------------EEEEEEECCCT-TCCCCEECTTSSEEEE
T ss_pred             ecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------ccceEEecCCC-CEEEEEECCCCCEEEE
Confidence            45678999999999999 8899999999999999999887            56678889988 6899999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.|+.|++||+.+.....                                 ........+.+|.+.|.++.|+|+++..
T Consensus       126 ~~~d~~v~iw~~~~~~~~~---------------------------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~  172 (380)
T 3iz6_a          126 GGLDSACSIFNLSSQADRD---------------------------------GNMPVSRVLTGHKGYASSCQYVPDQETR  172 (380)
T ss_dssp             CCSSSCCEEEECCCCSSCC---------------------------------CSSTTCCBCCCCSSCCCCCBCCSSSSSC
T ss_pred             eeCCCcEEEEECCCCcccc---------------------------------CCccceeeccCCCcceEEEEEecCCCCE
Confidence            9999999999987532110                                 1112235678999999999999987678


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeee-----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      |++|+.|++|++||++++.  ....+     .+|...|.+++|+|.++++|++|+.||.|++||++..     ...+..+
T Consensus       173 l~s~s~D~~i~~wd~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-----~~~~~~~  245 (380)
T 3iz6_a          173 LITGSGDQTCVLWDVTTGQ--RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-----SRAVRTY  245 (380)
T ss_dssp             EEEECTTSCEEEECTTTCC--EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-----CCCCEEE
T ss_pred             EEEECCCCcEEEEEcCCCc--EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-----CcceEEE
Confidence            9999999999999999887  34333     5789999999998868899999999999999999852     4678899


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-------CCCCcceEEecCC
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-------HRDKVVDFHWNAS  441 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~V~~~~~~p~  441 (496)
                      .+|...|.+++|+|++. .|++|+.||.|++||++..               ..+..+..       +...|++++|+|+
T Consensus       246 ~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~lwd~~~~---------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~  309 (380)
T 3iz6_a          246 HGHEGDINSVKFFPDGQ-RFGTGSDDGTCRLFDMRTG---------------HQLQVYNREPDRNDNELPIVTSVAFSIS  309 (380)
T ss_dssp             CCCSSCCCEEEECTTSS-EEEEECSSSCEEEEETTTT---------------EEEEEECCCCSSSCCSSCSCSEEEECSS
T ss_pred             CCcCCCeEEEEEecCCC-eEEEEcCCCeEEEEECCCC---------------cEEEEecccccccccccCceEEEEECCC
Confidence            99999999999999998 4689999999999999874               22222222       2335899999998


Q ss_pred             CCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH----HhccceEEEeccCC
Q 010997          442 DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL----EKFKAHVISCTSKP  496 (496)
Q Consensus       442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l----~~h~~~v~~~~~sP  496 (496)
                      +.+++        +|+.||.|+|||+.      .++.+..+    .+|.+.|.+++|+|
T Consensus       310 g~~l~--------~g~~dg~i~vwd~~------~~~~~~~~~~~~~~h~~~v~~l~~s~  354 (380)
T 3iz6_a          310 GRLLF--------AGYSNGDCYVWDTL------LAEMVLNLGTLQNSHEGRISCLGLSS  354 (380)
T ss_dssp             SSEEE--------EECTTSCEEEEETT------TCCEEEEECCSCSSCCCCCCEEEECS
T ss_pred             CCEEE--------EEECCCCEEEEECC------CCceEEEEecccCCCCCceEEEEECC
Confidence            88665        55556999999987      33333333    68999999999998

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.9e-41  Score=326.19  Aligned_cols=275  Identities=17%  Similarity=0.283  Sum_probs=219.5

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeC------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTD------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      ..|.+.|++++|+| +|++||+|+.      ||.|++|+..++....        .......+|.. .|++++|+|++. 
T Consensus        39 ~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~--------~~~~~~~~~~~-~V~~~~~s~d~~-  107 (357)
T 4g56_B           39 ACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNE--------SLCTAGVQTEA-GVTDVAWVSEKG-  107 (357)
T ss_dssp             -CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CG--------GGCSEEEECSS-CEEEEEEETTTE-
T ss_pred             ccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcce--------eEecccCCCCC-CEEEEEEcCCCC-
Confidence            36999999999999 9999999997      7789999987763221        22345567776 699999999986 


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      +++++.||+|+|||+.++.....                                    ......+|...|++++|+|++
T Consensus       108 ~l~~s~dg~v~lWd~~~~~~~~~------------------------------------~~~~~~~h~~~V~~v~~spdg  151 (357)
T 4g56_B          108 ILVASDSGAVELWEILEKESLLV------------------------------------NKFAKYEHDDIVKTLSVFSDG  151 (357)
T ss_dssp             EEEEETTSCEEEC--------CC------------------------------------CCEEECCCSSCEEEEEECSSS
T ss_pred             EEEEECCCEEEEeeccccceeEE------------------------------------EeeccCCCCCCEEEEEECCCC
Confidence            55677899999999976532111                                    113445799999999999998


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE--e
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK--F  368 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~--~  368 (496)
                       .+|++|+.|+.|++||+++++  ....+.+|...|++++|+|....++++++.||.|++||+++      +.++..  +
T Consensus       152 -~~l~sgs~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~------~~~~~~~~~  222 (357)
T 4g56_B          152 -TQAVSGGKDFSVKVWDLSQKA--VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK------PKPATRIDF  222 (357)
T ss_dssp             -SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS------SSCBCBCCC
T ss_pred             -CEEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC------Cceeeeeee
Confidence             789999999999999999887  67778899999999999994456899999999999999998      444444  4


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s  448 (496)
                      ..|...+.+++|+|++..+||+|+.|+.|++||++..               ..+..+.+|...|++++|+|++..++|+
T Consensus       223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---------------~~~~~~~~~~~~v~~l~~sp~~~~~las  287 (357)
T 4g56_B          223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---------------DSAQTSAVHSQNITGLAYSYHSSPFLAS  287 (357)
T ss_dssp             TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---------------GGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred             ccccccccchhhhhcccceEEEeecccceeEEECCCC---------------cEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence            4577889999999998878999999999999999874               3455678999999999999998877886


Q ss_pred             ecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          449 VSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ++.|       ++|+|||+.      .++++.. .+|.+.|.+|+|||
T Consensus       288 gs~D-------~~i~iwd~~------~~~~~~~-~~H~~~V~~vafsP  321 (357)
T 4g56_B          288 ISED-------CTVAVLDAD------FSEVFRD-LSHRDFVTGVAWSP  321 (357)
T ss_dssp             EETT-------SCEEEECTT------SCEEEEE-CCCSSCEEEEEECS
T ss_pred             EeCC-------CEEEEEECC------CCcEeEE-CCCCCCEEEEEEeC
Confidence            6665       999999998      4555444 37999999999998

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.7e-41  Score=322.79  Aligned_cols=299  Identities=18%  Similarity=0.317  Sum_probs=229.1

Q ss_pred             EEEecCCC-ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          134 HKTIIHPG-EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       134 ~~~~~h~~-~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      ..+.+|.+ .|++++|+| ++++||+|+.||+|+|||+......         .......+|.. .|.+++|+|++++|+
T Consensus         9 ~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~---------~~~~~~~~h~~-~v~~~~~sp~g~~l~   77 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWI---------CKSVLSEGHQR-TVRKVAWSPCGNYLA   77 (345)
T ss_dssp             EEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEE---------EEEEECSSCSS-CEEEEEECTTSSEEE
T ss_pred             eeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcce---------eeeeeccccCC-cEEEEEECCCCCEEE
Confidence            34557988 999999999 8899999999999999999766100         01122367887 799999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.|++|++||+....                                      ...+..+.+|...|.+++|+|++ .
T Consensus        78 s~s~D~~v~iw~~~~~~--------------------------------------~~~~~~~~~h~~~v~~v~~sp~~-~  118 (345)
T 3fm0_A           78 SASFDATTCIWKKNQDD--------------------------------------FECVTTLEGHENEVKSVAWAPSG-N  118 (345)
T ss_dssp             EEETTSCEEEEEECCC---------------------------------------EEEEEEECCCSSCEEEEEECTTS-S
T ss_pred             EEECCCcEEEEEccCCC--------------------------------------eEEEEEccCCCCCceEEEEeCCC-C
Confidence            99999999999986431                                      12236778999999999999998 7


Q ss_pred             eEEEEcCCCeEEEEEccCCCc-cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          293 EFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      +|++|+.|++|++||++.... .....+..|...|.+++|+| ++.+|++|+.|+.|++||++...    ..+...+.+|
T Consensus       119 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h  193 (345)
T 3fm0_A          119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD----WVCCATLEGH  193 (345)
T ss_dssp             EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE----EEEEEEECCC
T ss_pred             EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC----EEEEEEecCC
Confidence            999999999999999987652 23456678999999999999 89999999999999999998721    1355788999


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecCCCCcEEEEec
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      ...|.+++|+|++. +|++++.|+.|+|||+...+...............++..+.+ |...|.+++|+|++..++    
T Consensus       194 ~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~----  268 (345)
T 3fm0_A          194 ESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALA----  268 (345)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEE----
T ss_pred             CCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEE----
Confidence            99999999999998 468999999999999765332221111111011133444555 888999999999887755    


Q ss_pred             CCCCCCCCCCeEEEeecCCCCcC--CchH-HHHHHHhccceEEEeccCC
Q 010997          451 DDCDSTGGGGTLQIWRMSDLIYR--PQDE-VLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~~~~--~~~~-~~~~l~~h~~~v~~~~~sP  496 (496)
                          +++.|+.|++|+.......  +... ....+.+|...|.+|+|+|
T Consensus       269 ----s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p  313 (345)
T 3fm0_A          269 ----TACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNP  313 (345)
T ss_dssp             ----EEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECS
T ss_pred             ----EEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeC
Confidence                4444599999998742110  0000 1123468999999999998

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.4e-40  Score=315.47  Aligned_cols=256  Identities=22%  Similarity=0.346  Sum_probs=209.0

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ....+|.+.|++++|+| ++. +++++.||+|+|||+.++....        .......+|.. .|++++|+|++++|++
T Consensus        88 ~~~~~~~~~V~~~~~s~-d~~-~l~~s~dg~v~lWd~~~~~~~~--------~~~~~~~~h~~-~V~~v~~spdg~~l~s  156 (357)
T 4g56_B           88 TAGVQTEAGVTDVAWVS-EKG-ILVASDSGAVELWEILEKESLL--------VNKFAKYEHDD-IVKTLSVFSDGTQAVS  156 (357)
T ss_dssp             SEEEECSSCEEEEEEET-TTE-EEEEETTSCEEEC--------C--------CCCEEECCCSS-CEEEEEECSSSSEEEE
T ss_pred             cccCCCCCCEEEEEEcC-CCC-EEEEECCCEEEEeeccccceeE--------EEeeccCCCCC-CEEEEEECCCCCEEEE
Confidence            35568999999999999 665 4567889999999998763211        22234567887 7999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.||+|++||++++..                                        +..+.+|...|++++|+|++..+
T Consensus       157 gs~dg~v~iwd~~~~~~----------------------------------------~~~~~~h~~~v~~v~~s~~~~~~  196 (357)
T 4g56_B          157 GGKDFSVKVWDLSQKAV----------------------------------------LKSYNAHSSEVNCVAACPGKDTI  196 (357)
T ss_dssp             EETTSCEEEEETTTTEE----------------------------------------EEEECCCSSCEEEEEECTTCSSC
T ss_pred             EeCCCeEEEEECCCCcE----------------------------------------EEEEcCCCCCEEEEEEccCCCce
Confidence            99999999999975432                                        36778899999999999998778


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      +++++.||+|++||+++++.........|...+++++|+|..+.+|++|+.|+.|++||+++      +.++..+.+|..
T Consensus       197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~------~~~~~~~~~~~~  270 (357)
T 4g56_B          197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN------PDSAQTSAVHSQ  270 (357)
T ss_dssp             EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC------GGGCEEECCCSS
T ss_pred             eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC------CcEeEEEeccce
Confidence            99999999999999998874333444567888999999995578999999999999999998      788999999999


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  453 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~  453 (496)
                      .|++++|+|++..+||+|+.|+.|+|||+...               ++ ....+|.+.|++++|+|.+..+++|++.| 
T Consensus       271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---------------~~-~~~~~H~~~V~~vafsP~d~~~l~s~s~D-  333 (357)
T 4g56_B          271 NITGLAYSYHSSPFLASISEDCTVAVLDADFS---------------EV-FRDLSHRDFVTGVAWSPLDHSKFTTVGWD-  333 (357)
T ss_dssp             CEEEEEECSSSSCCEEEEETTSCEEEECTTSC---------------EE-EEECCCSSCEEEEEECSSSTTEEEEEETT-
T ss_pred             eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---------------cE-eEECCCCCCEEEEEEeCCCCCEEEEEcCC-
Confidence            99999999998767889999999999999873               23 34458999999999999656667766554 


Q ss_pred             CCCCCCCeEEEeecCC
Q 010997          454 DSTGGGGTLQIWRMSD  469 (496)
Q Consensus       454 ~sgg~Dg~i~iw~~~~  469 (496)
                            |+|++|++..
T Consensus       334 ------g~v~iW~~~~  343 (357)
T 4g56_B          334 ------HKVLHHHLPS  343 (357)
T ss_dssp             ------SCEEEEECC-
T ss_pred             ------CeEEEEECCC
Confidence                  9999999973

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.5e-40  Score=315.28  Aligned_cols=290  Identities=18%  Similarity=0.291  Sum_probs=226.9

Q ss_pred             CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997           95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP  174 (496)
Q Consensus        95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~  174 (496)
                      ++.+..++||+..-...                  ..+.....+|.+.|++++|+| ++++||+|+.|++|+|||+....
T Consensus        34 ~~~D~~i~iw~~~~~~~------------------~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~   94 (345)
T 3fm0_A           34 CGGDRRIRIWGTEGDSW------------------ICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDD   94 (345)
T ss_dssp             EETTSCEEEEEEETTEE------------------EEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-
T ss_pred             EcCCCeEEEEEcCCCcc------------------eeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCC
Confidence            34678899998642110                  011122347999999999999 88999999999999999987651


Q ss_pred             CccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997          175 NRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK  254 (496)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (496)
                                ......+.+|.. .|.+++|+|++++|++|+.|++|++||+.....                        
T Consensus        95 ----------~~~~~~~~~h~~-~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~------------------------  139 (345)
T 3fm0_A           95 ----------FECVTTLEGHEN-EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE------------------------  139 (345)
T ss_dssp             ----------EEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEECTTSC------------------------
T ss_pred             ----------eEEEEEccCCCC-CceEEEEeCCCCEEEEEECCCeEEEEECCCCCC------------------------
Confidence                      134567889988 699999999999999999999999999874321                        


Q ss_pred             CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC
Q 010997          255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL  334 (496)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~  334 (496)
                                   ...+..+.+|...|.+++|+|++ .+|++++.|+.|++||++.+.......+.+|...|++++|+| 
T Consensus       140 -------------~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-  204 (345)
T 3fm0_A          140 -------------YECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-  204 (345)
T ss_dssp             -------------EEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-
T ss_pred             -------------eEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-
Confidence                         12235677899999999999998 789999999999999998876434567789999999999999 


Q ss_pred             CCcEEEEEcCCCcEEEEeCCCCCCCC---------CCCCceEecc-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          335 DDNLILTGSADNSVRMFDRRNLTSNG---------VGSPINKFEG-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       335 ~~~~l~sgs~dg~i~iwd~~~~~~~~---------~~~~~~~~~~-h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ++.+|++|+.||+|+|||........         ...++..+.+ |...|.+++|+|++.. |++++.|+.|++|+...
T Consensus       205 ~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          205 SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-LATACGDDAIRVFQEDP  283 (345)
T ss_dssp             TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-EEEEETTSCEEEEEECT
T ss_pred             CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-EEEEeCCCeEEEEEeCC
Confidence            99999999999999999975432110         0122334444 8899999999999985 67999999999999876


Q ss_pred             CCcccCCCCCCCCCCCe--eEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          405 VGKKVEQGPRTTNYPAG--LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       405 ~~~~~~~~~~~~~~~~~--~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .....        .+..  ....+.+|...|++++|+|+++.++||++.|       |+|+||++..
T Consensus       284 ~~~~~--------~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D-------g~v~~W~~~~  335 (345)
T 3fm0_A          284 NSDPQ--------QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD-------GEVAFWKYQR  335 (345)
T ss_dssp             TSCTT--------SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT-------SCEEEEEECC
T ss_pred             CCCcc--------eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC-------CcEEEEEecC
Confidence            32211        1111  1223468999999999999988788877665       9999999984

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-39  Score=305.25  Aligned_cols=263  Identities=19%  Similarity=0.280  Sum_probs=209.4

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL  212 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~  212 (496)
                      ...+|.+.|++++|+| ++++||+|+.|++|+|||+...          ..++...+.+|.+ .|++++|+++  +++|+
T Consensus         4 ~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~----------~~~~~~~l~gH~~-~V~~v~~s~~~~g~~l~   71 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA   71 (297)
T ss_dssp             ECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSS----------CBCCCEEECCCSS-CEEEEEECCGGGCSEEE
T ss_pred             eccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCC----------CcEEEEEEccccC-CeEEEEecCCCcCCEEE
Confidence            3458999999999999 8999999999999999999753          1245678999998 7999999864  88999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--C
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S  290 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~  290 (496)
                      ||+.||+|++||++++..                                      ..+..+.+|...|.+++|+|+  +
T Consensus        72 s~s~D~~v~iWd~~~~~~--------------------------------------~~~~~~~~h~~~v~~v~~~p~~~g  113 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG  113 (297)
T ss_dssp             EEETTTEEEEEEBSSSCB--------------------------------------CCCEEECCCSSCEEEEEECCGGGC
T ss_pred             EEcCCCEEEEEEcCCCce--------------------------------------EEEEEeecCCCceeEEEeCcCCCC
Confidence            999999999999975321                                      122556789999999999997  5


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC------------CcEEEEEcCCCcEEEEeCCCCCC
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD------------DNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~------------~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                       .+|++++.|+.|++||++.........+.+|...|++++|+|..            +.+|++|+.|+.|++||++....
T Consensus       114 -~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~  192 (297)
T 2pm7_B          114 -PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ  192 (297)
T ss_dssp             -SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT
T ss_pred             -cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc
Confidence             78999999999999999876422245567899999999999931            47999999999999999987210


Q ss_pred             CCCCCCceEeccCCCCEEEEEEcCCC--CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997          359 NGVGSPINKFEGHSAAVLCVQWSPDK--SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  436 (496)
Q Consensus       359 ~~~~~~~~~~~~h~~~i~~l~~sp~~--~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  436 (496)
                        .......+.+|...|.+++|+|++  ..+||+++.|+.|+|||+......          ....+....+|...|.++
T Consensus       193 --~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~----------~~~~~~~~~~~~~~v~~~  260 (297)
T 2pm7_B          193 --TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP----------WKKTLLKEEKFPDVLWRA  260 (297)
T ss_dssp             --EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC----------CEEEESSSSCCSSCEEEE
T ss_pred             --eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc----------cceeeeecccCCCcEEEE
Confidence              001566789999999999999986  346889999999999998763110          001111125678899999


Q ss_pred             EecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +|+|++..++        +++.||+|+||+..
T Consensus       261 ~~s~~g~~la--------s~~~D~~v~lw~~~  284 (297)
T 2pm7_B          261 SWSLSGNVLA--------LSGGDNKVTLWKEN  284 (297)
T ss_dssp             EECSSSCCEE--------EEETTSCEEEEEEC
T ss_pred             EECCCCCEEE--------EEcCCCcEEEEEEC
Confidence            9999988755        44456999999987

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.9e-39  Score=306.57  Aligned_cols=271  Identities=23%  Similarity=0.387  Sum_probs=231.2

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .....+|.+.|++++|+| ++++||+|+.||.|+||++.++            +....+.+|.. .|.+++|+|++++|+
T Consensus        16 ~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~   81 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDG------------KFEKTISGHKL-GISDVAWSSDSNLLV   81 (312)
T ss_dssp             EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTSSEEE
T ss_pred             EEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCc------------ccchhhccCCC-ceEEEEEcCCCCEEE
Confidence            445678999999999999 8899999999999999999877            55667889987 699999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.||.|++||++++.                                        .+..+.+|...|.+++|+|++ .
T Consensus        82 s~~~d~~i~vwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~-~  120 (312)
T 4ery_A           82 SASDDKTLKIWDVSSGK----------------------------------------CLKTLKGHSNYVFCCNFNPQS-N  120 (312)
T ss_dssp             EEETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-S
T ss_pred             EECCCCEEEEEECCCCc----------------------------------------EEEEEcCCCCCEEEEEEcCCC-C
Confidence            99999999999997542                                        236778899999999999998 7


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGH  371 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h  371 (496)
                      +|++|+.|+.|++||+++++  ....+..|...|.+++|+| ++.+|++|+.||.|++||+++      +..+..+ ..+
T Consensus       121 ~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~~~~  191 (312)
T 4ery_A          121 LIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS------GQCLKTLIDDD  191 (312)
T ss_dssp             EEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECCSS
T ss_pred             EEEEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CceeeEEeccC
Confidence            99999999999999999887  5677788999999999999 899999999999999999998      6666665 456


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc--eEEecCCCCcEEEEe
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV--DFHWNASDPWTVVSV  449 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~~~~~p~~~~l~~s~  449 (496)
                      ...+..++|+|++.+ |++++.|+.|++||+...               ..+..+.+|...+.  ...+++.+..+++  
T Consensus       192 ~~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--  253 (312)
T 4ery_A          192 NPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKG---------------KCLKTYTGHKNEKYCIFANFSVTGGKWIV--  253 (312)
T ss_dssp             CCCEEEEEECTTSSE-EEEEETTTEEEEEETTTT---------------EEEEEECSSCCSSSCCCEEEECSSSCEEE--
T ss_pred             CCceEEEEECCCCCE-EEEEcCCCeEEEEECCCC---------------cEEEEEEecCCceEEEEEEEEeCCCcEEE--
Confidence            678999999999985 579999999999999874               45666777776543  3345544555565  


Q ss_pred             cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                           +|+.||.|++||+.      .++.+.++.+|...|.+++|+|
T Consensus       254 -----sg~~dg~i~vwd~~------~~~~~~~~~~h~~~v~~~~~~p  289 (312)
T 4ery_A          254 -----SGSEDNLVYIWNLQ------TKEIVQKLQGHTDVVISTACHP  289 (312)
T ss_dssp             -----ECCTTSCEEEEETT------TCCEEEEECCCSSCEEEEEECS
T ss_pred             -----EECCCCEEEEEECC------CchhhhhhhccCCcEEEEeecC
Confidence                 55556999999998      5677888999999999999998

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.9e-40  Score=319.34  Aligned_cols=283  Identities=21%  Similarity=0.356  Sum_probs=224.2

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC----------------
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----------------  195 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~----------------  195 (496)
                      +..+.++|.+.|++++|+| ++++||+|+ ++.++||++.++..            ...+.+|.                
T Consensus        56 ~~~~~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~------------~~~l~~~~~~~~~~~~~~~~~~~~  121 (393)
T 1erj_A           56 ELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSL------------VARLSDDSAANKDPENLNTSSSPS  121 (393)
T ss_dssp             EEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCE------------EEEECC-----------------C
T ss_pred             eeEEecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCE------------EEEecCccccccccccccccccCC
Confidence            3455678999999999999 889999987 68999999988732            22232221                


Q ss_pred             -CCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee
Q 010997          196 -DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY  274 (496)
Q Consensus       196 -~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (496)
                       ...|.+++|+|++++|++|+.|++|++||+.++.                                        .+..+
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~----------------------------------------~~~~~  161 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK----------------------------------------IVMIL  161 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE----------------------------------------EEEEE
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc----------------------------------------EEEEE
Confidence             1148899999999999999999999999997542                                        23667


Q ss_pred             ecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997          275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  354 (496)
Q Consensus       275 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~  354 (496)
                      .+|...|.+++|+|++ .+|++++.|++|++||+++++  ....+ .+...+.+++|+|.++.+|++|+.||.|++||++
T Consensus       162 ~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~  237 (393)
T 1erj_A          162 QGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQ--CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE  237 (393)
T ss_dssp             CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT
T ss_pred             ccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCe--eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence            8899999999999998 789999999999999999876  34443 4678899999999778999999999999999999


Q ss_pred             CCCCCCCCCCceEe-------ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997          355 NLTSNGVGSPINKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  427 (496)
Q Consensus       355 ~~~~~~~~~~~~~~-------~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (496)
                      +      +..+..+       .+|...|.+++|+|++.. |++|+.|+.|++||+..........   ......+...+.
T Consensus       238 ~------~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~wd~~~~~~~~~~~---~~~~~~~~~~~~  307 (393)
T 1erj_A          238 T------GFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNLQNANNKSDSK---TPNSGTCEVTYI  307 (393)
T ss_dssp             T------CCEEEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEEC------------------CEEEEEE
T ss_pred             C------CcEEEeecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEECCCCCCccccc---CCCCCcceEEEe
Confidence            8      5666555       579999999999999985 6799999999999998642211100   001123556678


Q ss_pred             CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +|...|.+++|+|++.+++        +|+.||.|++||+.      .++.+..+.+|.+.|.+++|+|
T Consensus       308 ~h~~~v~~~~~~~~~~~l~--------sgs~D~~v~iwd~~------~~~~~~~l~~h~~~v~~v~~~~  362 (393)
T 1erj_A          308 GHKDFVLSVATTQNDEYIL--------SGSKDRGVLFWDKK------SGNPLLMLQGHRNSVISVAVAN  362 (393)
T ss_dssp             CCSSCEEEEEECGGGCEEE--------EEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEECS
T ss_pred             cccCcEEEEEECCCCCEEE--------EEeCCCeEEEEECC------CCeEEEEECCCCCCEEEEEecC
Confidence            9999999999999887655        45556999999998      5677788899999999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.6e-39  Score=306.47  Aligned_cols=279  Identities=16%  Similarity=0.291  Sum_probs=225.0

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..+.+|.+.|++++|+|.++++|++|+.|++|++||+.......       ..+...+.+|.. .|.+++|+|++++|++
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~-------~~~~~~~~~h~~-~v~~~~~s~dg~~l~s   82 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF-------GVPVRSFKGHSH-IVQDCTLTADGAYALS   82 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE-------EEEEEEEECCSS-CEEEEEECTTSSEEEE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc-------cccceEEeCCcc-cEEEEEECCCCCEEEE
Confidence            34568999999999999677899999999999999987542111       135668899998 7999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.|++|++||+.++..                                        +..+.+|...|.+++|+|++ .+
T Consensus        83 ~s~D~~v~~wd~~~~~~----------------------------------------~~~~~~h~~~v~~~~~~~~~-~~  121 (319)
T 3frx_A           83 ASWDKTLRLWDVATGET----------------------------------------YQRFVGHKSDVMSVDIDKKA-SM  121 (319)
T ss_dssp             EETTSEEEEEETTTTEE----------------------------------------EEEEECCSSCEEEEEECTTS-CE
T ss_pred             EeCCCEEEEEECCCCCe----------------------------------------eEEEccCCCcEEEEEEcCCC-CE
Confidence            99999999999975432                                        36788999999999999998 79


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-----CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-----DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-----~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      |++|+.|++|++||++..   ....+.+|...|.+++|+|.     ++.+|++|+.|+.|++||+++      ......+
T Consensus       122 l~s~s~D~~i~vwd~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~~  192 (319)
T 3frx_A          122 IISGSRDKTIKVWTIKGQ---CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIEADF  192 (319)
T ss_dssp             EEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT------TEEEEEE
T ss_pred             EEEEeCCCeEEEEECCCC---eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc------chhheee
Confidence            999999999999999743   45667799999999999983     234899999999999999998      6778889


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s  448 (496)
                      .+|...|.+++|+|++. +|++|+.||.|+|||+...               ..+..+..+ ..|.+++|+|++.+++ +
T Consensus       193 ~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~-~~v~~~~~sp~~~~la-~  254 (319)
T 3frx_A          193 IGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAK---------------KAMYTLSAQ-DEVFSLAFSPNRYWLA-A  254 (319)
T ss_dssp             CCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTT---------------EEEEEEECC-SCEEEEEECSSSSEEE-E
T ss_pred             cCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---------------cEEEEecCC-CcEEEEEEcCCCCEEE-E
Confidence            99999999999999998 5689999999999999874               445555544 5799999999876554 3


Q ss_pred             ecCCCCCCCCCCeEEEeecCCCCcCCc--hHHHHHHHhccceEEEeccCC
Q 010997          449 VSDDCDSTGGGGTLQIWRMSDLIYRPQ--DEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       449 ~s~d~~sgg~Dg~i~iw~~~~~~~~~~--~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ++.        +.+++|++........  .........|...|.+++|+|
T Consensus       255 ~~~--------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  296 (319)
T 3frx_A          255 ATA--------TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA  296 (319)
T ss_dssp             EET--------TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT
T ss_pred             EcC--------CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC
Confidence            332        5699999874211000  011112245677899999998

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7e-39  Score=306.38  Aligned_cols=248  Identities=21%  Similarity=0.325  Sum_probs=211.2

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      .....|.+.|.+++|+| ++++||+|+.|+.|++||+.+...        ..+....+.+|.. .|.++.|++++. |++
T Consensus        91 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~--------~~~~~~~~~~h~~-~v~~~~~~~~~~-l~s  159 (340)
T 1got_B           91 HAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREG--------NVRVSRELAGHTG-YLSCCRFLDDNQ-IVT  159 (340)
T ss_dssp             EEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSB--------SCEEEEEEECCSS-CEEEEEEEETTE-EEE
T ss_pred             eEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCC--------cceeEEEecCCCc-cEEEEEECCCCc-EEE
Confidence            34567999999999999 889999999999999999987521        1134457889987 689999998775 899


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.|++|++||+.++.                                        .+..+.+|...|.+++|+|++ .+
T Consensus       160 ~s~d~~i~~wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~  198 (340)
T 1got_B          160 SSGDTTCALWDIETGQ----------------------------------------QTTTFTGHTGDVMSLSLAPDT-RL  198 (340)
T ss_dssp             EETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTS-SE
T ss_pred             EECCCcEEEEECCCCc----------------------------------------EEEEEcCCCCceEEEEECCCC-CE
Confidence            9999999999997543                                        236678899999999999998 79


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc--C
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG--H  371 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~--h  371 (496)
                      |++|+.|+.|++||++++.  ....+.+|...|++++|+| ++.+|++|+.||+|++||++.      ...+..+..  +
T Consensus       199 l~sg~~d~~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~------~~~~~~~~~~~~  269 (340)
T 1got_B          199 FVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA------DQELMTYSHDNI  269 (340)
T ss_dssp             EEEEETTSCEEEEETTTCS--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTC
T ss_pred             EEEEeCCCcEEEEECCCCe--eEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCC------CcEEEEEccCCc
Confidence            9999999999999999887  6677889999999999999 999999999999999999998      556666542  3


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      ...|.+++|+|++. +|++|+.|+.|++||+...               ..+..+.+|...|.+++|+|++.+++     
T Consensus       270 ~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~s~dg~~l~-----  328 (340)
T 1got_B          270 ICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKA---------------DRAGVLAGHDNRVSCLGVTDDGMAVA-----  328 (340)
T ss_dssp             CSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECTTSSCEE-----
T ss_pred             ccceEEEEECCCCC-EEEEECCCCeEEEEEcccC---------------cEeeEeecCCCcEEEEEEcCCCCEEE-----
Confidence            45799999999998 5679999999999999874               45667889999999999999887655     


Q ss_pred             CCCCCCCCCeEEEee
Q 010997          452 DCDSTGGGGTLQIWR  466 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~  466 (496)
                         |||.||+|+|||
T Consensus       329 ---s~s~D~~i~iWd  340 (340)
T 1got_B          329 ---TGSWDSFLKIWN  340 (340)
T ss_dssp             ---EEETTSCEEEEC
T ss_pred             ---EEcCCccEEecC
Confidence               555569999996

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.2e-38  Score=294.93  Aligned_cols=285  Identities=20%  Similarity=0.314  Sum_probs=233.6

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      +..++.|.|+        ...|+.     ++.+..+.||+....                     ........|...|.+
T Consensus        15 ~V~~~~fsp~--------~~~l~s-----~~~dg~v~lWd~~~~---------------------~~~~~~~~~~~~v~~   60 (304)
T 2ynn_A           15 RVKGIDFHPT--------EPWVLT-----TLYSGRVELWNYETQ---------------------VEVRSIQVTETPVRA   60 (304)
T ss_dssp             CEEEEEECSS--------SSEEEE-----EETTSEEEEEETTTT---------------------EEEEEEECCSSCEEE
T ss_pred             ceEEEEECCC--------CCEEEE-----EcCCCcEEEEECCCC---------------------ceeEEeeccCCcEEE
Confidence            4457777775        123333     236778999975320                     122345579999999


Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI  225 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~  225 (496)
                      ++|+| ++++|++|+.|+.|++||+.++            +....+.+|.+ .|.+++|+|++++|++|+.||+|++||+
T Consensus        61 ~~~~~-~~~~l~s~s~d~~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           61 GKFIA-RKNWIIVGSDDFRIRVFNYNTG------------EKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             EEEEG-GGTEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEEG
T ss_pred             EEEeC-CCCEEEEECCCCEEEEEECCCC------------cEEEEEeCCCC-cEEEEEEcCCCCEEEEECCCCeEEEEEC
Confidence            99999 8899999999999999999988            66778999998 6999999999999999999999999998


Q ss_pred             CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997          226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL  305 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  305 (496)
                      +++..                                       ....+.+|...|.+++|+|.++.+|++|+.|++|++
T Consensus       127 ~~~~~---------------------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i  167 (304)
T 2ynn_A          127 ENNWA---------------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (304)
T ss_dssp             GGTTE---------------------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred             CCCcc---------------------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            75311                                       125678899999999999965589999999999999


Q ss_pred             EEccCCCccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC
Q 010997          306 WDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK  384 (496)
Q Consensus       306 wd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~  384 (496)
                      ||++.... .......|...+..++|+|. ++.+|++|+.|++|++||+++      +.++.++.+|...|.+++|+|++
T Consensus       168 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~------~~~~~~~~~h~~~v~~~~~~p~~  240 (304)
T 2ynn_A          168 WSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTL  240 (304)
T ss_dssp             EETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSS
T ss_pred             EECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC------CccceeeCCCCCCEEEEEECCCC
Confidence            99987763 33344467788999999873 567999999999999999998      78899999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCc-EEEEecCCCCCCCCCCeEE
Q 010997          385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQ  463 (496)
Q Consensus       385 ~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~-l~~s~s~d~~sgg~Dg~i~  463 (496)
                      . +|++|+.||.|+|||+.+.               .++..+..|...+.+++|+|++.. +++++++        +.+.
T Consensus       241 ~-~l~s~s~Dg~i~iWd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~--------~g~~  296 (304)
T 2ynn_A          241 P-IIISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASGFD--------NGFT  296 (304)
T ss_dssp             S-EEEEEETTSCEEEEETTTC---------------CEEEEECCSSSSEEEEEECTTCGGGCEEEEET--------TEEE
T ss_pred             C-EEEEEcCCCeEEEEECCCC---------------ceeeeccCCCccEEEEEECCCCCceEEEEecC--------CceE
Confidence            8 5789999999999999875               566677889999999999998864 4665554        5688


Q ss_pred             EeecC
Q 010997          464 IWRMS  468 (496)
Q Consensus       464 iw~~~  468 (496)
                      +|++.
T Consensus       297 ~~~~~  301 (304)
T 2ynn_A          297 VLSLG  301 (304)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            89887

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-39  Score=305.38  Aligned_cols=290  Identities=17%  Similarity=0.265  Sum_probs=215.3

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE-ec-CCCCcceeeeecCCCCce
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TG-HQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l-~~-h~~~~v~~l~~~p~~~~l  211 (496)
                      ..+.+|.+.|++++|+| +  +||+|+.||.|+|||+....          ......+ .+ |.. .|.+++|+|++++|
T Consensus         8 ~~~~~h~~~v~~~~~s~-~--~las~~~D~~i~lw~~~~~~----------~~~~~~~~~~~h~~-~v~~v~~sp~~~~l   73 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQ-G--ILATGSTDRKIKLVSVKYDD----------FTLIDVLDETAHKK-AIRSVAWRPHTSLL   73 (330)
T ss_dssp             EEEECCSSCEEEEEEET-T--EEEEEESSSCEEEEECSSSC----------CEEEEEECTTCCCS-CEEEEEECTTSSEE
T ss_pred             eeeccCCCceeeeccCC-C--EEEEEcCCCEEEEEEecCCC----------eEEEEEEecCCccC-CEEEEEECCCCCEE
Confidence            34568999999999998 4  99999999999999998651          1223344 34 776 79999999999999


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ++|+.|++|++||+......                                 ......+..+.+|...|.+++|+|++ 
T Consensus        74 as~s~D~~v~iw~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~V~~v~~sp~g-  119 (330)
T 2hes_X           74 AAGSFDSTVSIWAKEESADR---------------------------------TFEMDLLAIIEGHENEVKGVAWSNDG-  119 (330)
T ss_dssp             EEEETTSCEEEEEC----------------------------------------CCCEEEEEEC----CEEEEEECTTS-
T ss_pred             EEEeCCCcEEEEEcccCcCc---------------------------------cccceeEEEEcCCCCcEEEEEECCCC-
Confidence            99999999999998642110                                 01123346788999999999999998 


Q ss_pred             ceEEEEcCCCeEEEEEccCCC--ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          292 QEFCSVGDDSCLILWDARVGT--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      .+|++|+.|++|++||++...  ......+.+|...|.+++|+| ++.+|++|+.|++|++||.+...    ..++..+.
T Consensus       120 ~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~  194 (330)
T 2hes_X          120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD----WECVAVLN  194 (330)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE----EEEEEEEC
T ss_pred             CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC----eeEEEEcc
Confidence            799999999999999995432  124556778999999999999 89999999999999999988621    25788899


Q ss_pred             cCCCCEEEEEEcCCC-CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecCCCCcEEE
Q 010997          370 GHSAAVLCVQWSPDK-SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~-~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~l~~  447 (496)
                      +|...|.+++|+|++ ..+|++|+.|+.|++||+........       ........+.+ |...|.+++|++++  +++
T Consensus       195 ~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~-------~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~  265 (330)
T 2hes_X          195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ-------QEWVCEAILPDVHKRQVYNVAWGFNG--LIA  265 (330)
T ss_dssp             CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC-------EEEEEEEECCSCCSSCEEEEEECTTS--CEE
T ss_pred             CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc-------ceeEEeeecccccccceEEEEEcCCC--EEE
Confidence            999999999999983 23578999999999999976311000       00123333444 89999999999754  455


Q ss_pred             EecCCCCCCCCCCeEEEeecCCCCcCCchHHH-HHHHhccc-eEEEeccCC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL-AELEKFKA-HVISCTSKP  496 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~-~~l~~h~~-~v~~~~~sP  496 (496)
                      +++.       ||+|+||++...    ..+.+ ..+.+|.. .|.+++|+|
T Consensus       266 s~~~-------dg~v~iw~~~~~----~~~~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          266 SVGA-------DGVLAVYEEVDG----EWKVFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             EEET-------TSCEEEEEEETT----EEEEEEEESCTTTTSCEEEEEEC-
T ss_pred             EEeC-------CCEEEEEEcCCC----ceEEEeccccccccceEEEEEEec
Confidence            5444       599999998731    00111 22356877 899999987

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-37  Score=299.09  Aligned_cols=270  Identities=19%  Similarity=0.289  Sum_probs=222.6

Q ss_pred             CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997           95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP  174 (496)
Q Consensus        95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~  174 (496)
                      ++.+..+.||+....                     ........|...|.+++|+| ++.+||+|+.|+.+++|++....
T Consensus        82 ~s~Dg~v~vWd~~~~---------------------~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~  139 (354)
T 2pbi_B           82 SSQDGKVIVWDSFTT---------------------NKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDK  139 (354)
T ss_dssp             EETTSEEEEEETTTC---------------------CEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCCCT
T ss_pred             EeCCCeEEEEECCCC---------------------CcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEeccc
Confidence            357788999974210                     12234456888999999999 88999999999999999987652


Q ss_pred             CccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997          175 NRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK  254 (496)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (496)
                      ...      .......+.+|.. .|.+++|+|++.+|++|+.|++|++||++++.                         
T Consensus       140 ~~~------~~~~~~~~~~h~~-~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-------------------------  187 (354)
T 2pbi_B          140 NEN------MAAKKKSVAMHTN-YLSACSFTNSDMQILTASGDGTCALWDVESGQ-------------------------  187 (354)
T ss_dssp             TCC------SGGGCEEEEECSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCC-------------------------
T ss_pred             ccc------ccccceeeeccCC-cEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-------------------------
Confidence            211      1134567788987 69999999999999999999999999997543                         


Q ss_pred             CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecC
Q 010997          255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP  333 (496)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp  333 (496)
                                     .+..+.+|...|.+++|+|.. +.+|++|+.||.|++||+++++  ....+..|...|++++|+|
T Consensus       188 ---------------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h~~~v~~v~~~p  250 (354)
T 2pbi_B          188 ---------------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ--CVQAFETHESDVNSVRYYP  250 (354)
T ss_dssp             ---------------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT
T ss_pred             ---------------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCeEEEEEeC
Confidence                           246788999999999998852 2799999999999999999987  6777889999999999999


Q ss_pred             CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC--CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997          334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  411 (496)
Q Consensus       334 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~  411 (496)
                       ++.+|++|+.|++|++||++.      ...+..+..+  ...+.+++|+|++. +|++|+.|+.|++||+...      
T Consensus       251 -~~~~l~s~s~D~~v~lwd~~~------~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~------  316 (354)
T 2pbi_B          251 -SGDAFASGSDDATCRLYDLRA------DREVAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKG------  316 (354)
T ss_dssp             -TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC------
T ss_pred             -CCCEEEEEeCCCeEEEEECCC------CcEEEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCC------
Confidence             899999999999999999998      5555555433  45789999999998 5679999999999999774      


Q ss_pred             CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997          412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~  466 (496)
                               ..+..+.+|...|++++|+|++.+++        ||+.||+|+||+
T Consensus       317 ---------~~~~~l~~h~~~v~~l~~spdg~~l~--------sgs~D~~v~vW~  354 (354)
T 2pbi_B          317 ---------SRVSILFGHENRVSTLRVSPDGTAFC--------SGSWDHTLRVWA  354 (354)
T ss_dssp             ---------SEEEEECCCSSCEEEEEECTTSSCEE--------EEETTSEEEEEC
T ss_pred             ---------ceEEEEECCCCcEEEEEECCCCCEEE--------EEcCCCCEEecC
Confidence                     45667789999999999999988765        555569999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.8e-39  Score=331.83  Aligned_cols=314  Identities=14%  Similarity=0.190  Sum_probs=230.5

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe-------cCCCCcceeeeecCC
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-------GHQDNAEFALAMCPT  207 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-------~h~~~~v~~l~~~p~  207 (496)
                      .+.+|.+.|++++|+| ++++||+|+.||+|+|||+.++            +....+.       +|.+ .|++++|+|+
T Consensus       185 ~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g------------~~~~~~~~~~~~~~~h~~-~V~~v~~spd  250 (611)
T 1nr0_A          185 TFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDG------------TKTGVFEDDSLKNVAHSG-SVFGLTWSPD  250 (611)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEECBCTTSSSCSSSS-CEEEEEECTT
T ss_pred             eeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCC------------cEeeeeccccccccccCC-CEEEEEECCC
Confidence            4568999999999999 8899999999999999999877            2333342       7887 7999999999


Q ss_pred             CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceec----cCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997          208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK----QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED  283 (496)
Q Consensus       208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  283 (496)
                      +++|++|+.|++|++||+.++............ ......+..    ......++.+.+|+.........+.+|...|++
T Consensus       251 g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~  329 (611)
T 1nr0_A          251 GTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITA  329 (611)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc-cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEE
Confidence            999999999999999999876543221110000 000000000    001123455666776666677788899999999


Q ss_pred             EEEccCCCceEEEEcCCCeEEEEEccCCCcccee----------------------------------------------
Q 010997          284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK----------------------------------------------  317 (496)
Q Consensus       284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------------------------------------------  317 (496)
                      ++|+|++ .+|++++.|++|++||+.++......                                              
T Consensus       330 l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~  408 (611)
T 1nr0_A          330 LSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN  408 (611)
T ss_dssp             EEECTTS-SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEE
T ss_pred             EEEeCCC-CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeee
Confidence            9999998 79999999999999998765310000                                              


Q ss_pred             ----------------------------------eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997          318 ----------------------------------VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       318 ----------------------------------~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~  363 (496)
                                                        ....|...+.+++|+| ++.+||+|+.|++|++||+....    ..
T Consensus       409 ~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~----~~  483 (611)
T 1nr0_A          409 KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGAS----VS  483 (611)
T ss_dssp             ECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTE----EE
T ss_pred             ecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCc----ee
Confidence                                              0001335578999999 99999999999999999998611    11


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  443 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~  443 (496)
                      .+.. .+|...|++++|+|++.+ ||+++.|+.|++||+...++...            .....+|...|.+++|+|++.
T Consensus       484 ~~~~-~~h~~~v~~v~fspdg~~-las~s~d~~v~~w~~~~~~~~~~------------~~~~~~H~~~V~~v~fspdg~  549 (611)
T 1nr0_A          484 EVKT-IVHPAEITSVAFSNNGAF-LVATDQSRKVIPYSVANNFELAH------------TNSWTFHTAKVACVSWSPDNV  549 (611)
T ss_dssp             EEEE-EECSSCEEEEEECTTSSE-EEEEETTSCEEEEEGGGTTEESC------------CCCCCCCSSCEEEEEECTTSS
T ss_pred             eeec-cCCCCceEEEEECCCCCE-EEEEcCCCCEEEEEcCCCCceee------------eeeeeecccceeEEEECCCCC
Confidence            2233 679999999999999994 68999999999999976322110            001245999999999999887


Q ss_pred             cEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHH-HHHHhc-cceEEEeccCC
Q 010997          444 WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL-AELEKF-KAHVISCTSKP  496 (496)
Q Consensus       444 ~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~-~~l~~h-~~~v~~~~~sP  496 (496)
                      ++ |       ||+.|++|+||++...     .+.+ ..+.+| ...|.+++|+|
T Consensus       550 ~l-a-------sgs~D~~v~lW~~~~~-----~~~~~~~~~~h~~~~v~~v~fs~  591 (611)
T 1nr0_A          550 RL-A-------TGSLDNSVIVWNMNKP-----SDHPIIIKGAHAMSSVNSVIWLN  591 (611)
T ss_dssp             EE-E-------EEETTSCEEEEETTCT-----TSCCEEETTSSTTSCEEEEEEEE
T ss_pred             EE-E-------EEECCCcEEEEECCCc-----ccccchhhccCcccCeeEEEEcC
Confidence            65 4       4555699999999832     1122 456789 89999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.4e-39  Score=329.99  Aligned_cols=284  Identities=17%  Similarity=0.273  Sum_probs=226.5

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ...+|.+.|++++|+| ++++||+|+.||+|+|||+.+..          ......+.+|.. .|.+++|+|++++|+++
T Consensus        54 ~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~----------~~~~~~~~~~~~-~v~~v~fs~dg~~l~~~  121 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTT----------HILKTTIPVFSG-PVKDISWDSESKRIAAV  121 (611)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTT----------CCEEEEEECSSS-CEEEEEECTTSCEEEEE
T ss_pred             EecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCc----------ceeeEeecccCC-ceEEEEECCCCCEEEEE
Confidence            4468999999999999 89999999999999999997541          123457788987 79999999999999988


Q ss_pred             cCC----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          215 GKD----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       215 ~~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      +.+    +.|++||....                                          ...+.+|...|++++|+|++
T Consensus       122 ~~~~~~~~~v~~wd~~~~------------------------------------------~~~l~gh~~~v~~v~f~p~~  159 (611)
T 1nr0_A          122 GEGRERFGHVFLFDTGTS------------------------------------------NGNLTGQARAMNSVDFKPSR  159 (611)
T ss_dssp             ECCSSCSEEEEETTTCCB------------------------------------------CBCCCCCSSCEEEEEECSSS
T ss_pred             ECCCCceeEEEEeeCCCC------------------------------------------cceecCCCCCceEEEECCCC
Confidence            865    47888885321                                          14567899999999999998


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-  369 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-  369 (496)
                      +..|++|+.|++|++||.+..+  ....+.+|...|++++|+| ++.+||+|+.|++|++||+.+      +..+..+. 
T Consensus       160 ~~~l~s~s~D~~v~lwd~~~~~--~~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~------g~~~~~~~~  230 (611)
T 1nr0_A          160 PFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVD------GTKTGVFED  230 (611)
T ss_dssp             SCEEEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEECBC
T ss_pred             CeEEEEEeCCCeEEEEECCCCe--EeeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCC------CcEeeeecc
Confidence            6679999999999999987765  5667889999999999999 999999999999999999988      66777773 


Q ss_pred             ------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC----------------------------
Q 010997          370 ------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT----------------------------  415 (496)
Q Consensus       370 ------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~----------------------------  415 (496)
                            +|.+.|.+++|+|++. +|++++.|+.|+|||+.............                            
T Consensus       231 ~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~  309 (611)
T 1nr0_A          231 DSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV  309 (611)
T ss_dssp             TTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred             ccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEE
Confidence                  7999999999999998 46899999999999998742211100000                            


Q ss_pred             CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEecc
Q 010997          416 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTS  494 (496)
Q Consensus       416 ~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~  494 (496)
                      +.........+.+|...|++++|+|++.+++        |++.|++|++||+..      ++....+ .+|...|.+++|
T Consensus       310 ~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~--------s~s~D~~v~~Wd~~~------~~~~~~~~~~h~~~v~~~~~  375 (611)
T 1nr0_A          310 NPELGSIDQVRYGHNKAITALSSSADGKTLF--------SADAEGHINSWDIST------GISNRVFPDVHATMITGIKT  375 (611)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETTT------CCEEECSSCSCSSCEEEEEE
T ss_pred             eCCCCCcceEEcCCCCCEEEEEEeCCCCEEE--------EEeCCCcEEEEECCC------CceeeecccCCcceEEEEEE
Confidence            0001124456679999999999999887654        444569999999983      3333333 578899999998


Q ss_pred             CC
Q 010997          495 KP  496 (496)
Q Consensus       495 sP  496 (496)
                      +|
T Consensus       376 s~  377 (611)
T 1nr0_A          376 TS  377 (611)
T ss_dssp             CT
T ss_pred             CC
Confidence            75

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-38  Score=304.74  Aligned_cols=283  Identities=17%  Similarity=0.257  Sum_probs=218.0

Q ss_pred             EEEecCCCceeEEEe-----cCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC
Q 010997          134 HKTIIHPGEVNRIRE-----LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE  208 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~-----~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~  208 (496)
                      ..+.+|.+.|++++|     ++.++.+||+|+.|++|+|||+........     ...+...+.+|.. .|.+++|+|++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----~~~~~~~l~~h~~-~V~~~~~~~~~   88 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----FGIPHKALTGHNH-FVSDLALSQEN   88 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----SEEEEEEECCCSS-CEEEEEECSST
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----cccccchhccCCC-ceEEEEECCCC
Confidence            356689999999999     666888999999999999999976521110     1134567889988 69999999999


Q ss_pred             CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      .+|++|+.|++|++||++++.                                        .+..+.+|...|.+++|+|
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~----------------------------------------~~~~~~~h~~~v~~v~~sp  128 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGT----------------------------------------TYKRFVGHQSEVYSVAFSP  128 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSC----------------------------------------EEEEEECCCSCEEEEEECS
T ss_pred             CEEEEEcCCCcEEEEECCCCc----------------------------------------EEEEEcCCCCcEEEEEECC
Confidence            999999999999999997542                                        2367889999999999999


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCC----------cEEEEEcCCCcEEEEeCCCCCC
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD----------NLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~----------~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      ++ .+|++++.|++|++||++............|...|.+++|+| ++          .+|++++.||.|++||..    
T Consensus       129 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----  202 (343)
T 2xzm_R          129 DN-RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTN----  202 (343)
T ss_dssp             ST-TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETT----
T ss_pred             CC-CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCC----
Confidence            98 789999999999999997432111111236889999999999 54          799999999999999954    


Q ss_pred             CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997          359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  438 (496)
Q Consensus       359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  438 (496)
                         ......+.+|...|.+++|+|++.+ ||+|+.||.|++||+......            ...  + .+...|.+++|
T Consensus       203 ---~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~v~iwd~~~~~~~------------~~~--~-~~~~~v~~v~~  263 (343)
T 2xzm_R          203 ---FQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKKLLIWDILNLTYP------------QRE--F-DAGSTINQIAF  263 (343)
T ss_dssp             ---TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCEEEEEESSCCSSC------------SEE--E-ECSSCEEEEEE
T ss_pred             ---CceeEEEcCccccceEEEECCCCCE-EEEEcCCCeEEEEECCCCccc------------cee--e-cCCCcEEEEEE
Confidence               4677888999999999999999985 679999999999999543211            111  1 23456999999


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC-------chHHHHHHHhccceEEEeccCC
Q 010997          439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP-------QDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~-------~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +|++.+ ++++ .       |+.|++|++.......       .........+|...|.+++|+|
T Consensus       264 sp~~~~-la~~-~-------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  319 (343)
T 2xzm_R          264 NPKLQW-VAVG-T-------DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNA  319 (343)
T ss_dssp             CSSSCE-EEEE-E-------SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECS
T ss_pred             CCCCCE-EEEE-C-------CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECC
Confidence            998764 4332 2       4789999997432111       0001112237888999999998

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.2e-38  Score=309.65  Aligned_cols=280  Identities=22%  Similarity=0.344  Sum_probs=220.5

Q ss_pred             CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997           95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP  174 (496)
Q Consensus        95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~  174 (496)
                      ++.+..++||+...                     .........|...|.+++|+| ++++||+|+.|+.|+|||+....
T Consensus        84 ~s~D~~v~iWd~~~---------------------~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~  141 (380)
T 3iz6_a           84 ASQDGRLIVWNALT---------------------SQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQA  141 (380)
T ss_dssp             EETTSEEEEEETTT---------------------TEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCS
T ss_pred             EeCCCeEEEEECCC---------------------CccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCc
Confidence            45678899987421                     012345568999999999999 88999999999999999997652


Q ss_pred             CccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCC
Q 010997          175 NRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP  253 (496)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (496)
                      ...     ........+.+|.+ .|.++.|.|++ .+|++|+.|++|++||+.++........                 
T Consensus       142 ~~~-----~~~~~~~~~~gh~~-~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-----------------  198 (380)
T 3iz6_a          142 DRD-----GNMPVSRVLTGHKG-YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS-----------------  198 (380)
T ss_dssp             SCC-----CSSTTCCBCCCCSS-CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC-----------------
T ss_pred             ccc-----CCccceeeccCCCc-ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec-----------------
Confidence            211     11234456789988 68999999974 5799999999999999986543211100                 


Q ss_pred             CCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecC
Q 010997          254 KPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP  333 (496)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp  333 (496)
                                        ....+|...|.+++|++.++.+|++|+.|++|++||++.... ....+.+|...|++++|+|
T Consensus       199 ------------------~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-~~~~~~~h~~~v~~v~~~p  259 (380)
T 3iz6_a          199 ------------------EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-AVRTYHGHEGDINSVKFFP  259 (380)
T ss_dssp             ------------------CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-CCEEECCCSSCCCEEEECT
T ss_pred             ------------------ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-ceEEECCcCCCeEEEEEec
Confidence                              112478899999999885558999999999999999985432 4566789999999999999


Q ss_pred             CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC-------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010997          334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  406 (496)
Q Consensus       334 ~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~  406 (496)
                       ++.+|++|+.||+|++||+++      +..+..+..+.       ..|++++|+|++.+ |++|+.||.|++||+... 
T Consensus       260 -~~~~l~s~s~D~~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~vwd~~~~-  330 (380)
T 3iz6_a          260 -DGQRFGTGSDDGTCRLFDMRT------GHQLQVYNREPDRNDNELPIVTSVAFSISGRL-LFAGYSNGDCYVWDTLLA-  330 (380)
T ss_dssp             -TSSEEEEECSSSCEEEEETTT------TEEEEEECCCCSSSCCSSCSCSEEEECSSSSE-EEEECTTSCEEEEETTTC-
T ss_pred             -CCCeEEEEcCCCeEEEEECCC------CcEEEEecccccccccccCceEEEEECCCCCE-EEEEECCCCEEEEECCCC-
Confidence             999999999999999999998      66666665432       34899999999994 679999999999998764 


Q ss_pred             cccCCCCCCCCCCCeeEEEe----cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          407 KKVEQGPRTTNYPAGLFFQH----AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~----~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                                    ..+..+    .+|.+.|++++|+|++.+++        |||.||+|+||++..
T Consensus       331 --------------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--------sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          331 --------------EMVLNLGTLQNSHEGRISCLGLSSDGSALC--------TGSWDKNLKIWAFSG  375 (380)
T ss_dssp             --------------CEEEEECCSCSSCCCCCCEEEECSSSSEEE--------EECTTSCEEEEECCS
T ss_pred             --------------ceEEEEecccCCCCCceEEEEECCCCCEEE--------EeeCCCCEEEEecCC
Confidence                          223333    68999999999999888655        566679999999983

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-38  Score=299.75  Aligned_cols=264  Identities=19%  Similarity=0.300  Sum_probs=197.5

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      +|.+.|++++|+| ++++||+|+.|++|+|||+.......     ....+...+.+|.. .|.+++|+|++++|++|+.|
T Consensus        56 ~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~h~~-~V~~v~~sp~g~~las~s~D  128 (330)
T 2hes_X           56 AHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRT-----FEMDLLAIIEGHEN-EVKGVAWSNDGYYLATCSRD  128 (330)
T ss_dssp             CCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC------------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETT
T ss_pred             CccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCcc-----ccceeEEEEcCCCC-cEEEEEECCCCCEEEEEeCC
Confidence            3999999999999 88999999999999999986431100     01244567889988 69999999999999999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      ++|++||+....                                    .....+..+.+|...|.+++|+|++ .+|++|
T Consensus       129 ~~v~iwd~~~~~------------------------------------~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~  171 (330)
T 2hes_X          129 KSVWIWETDESG------------------------------------EEYECISVLQEHSQDVKHVIWHPSE-ALLASS  171 (330)
T ss_dssp             SCEEEEECCTTC------------------------------------CCCEEEEEECCCSSCEEEEEECSSS-SEEEEE
T ss_pred             CEEEEEeccCCC------------------------------------CCeEEEEEeccCCCceEEEEECCCC-CEEEEE
Confidence            999999985321                                    1112346678899999999999998 799999


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC--CcEEEEEcCCCcEEEEeCCCCCCCCC--CCCceEecc-CC
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSADNSVRMFDRRNLTSNGV--GSPINKFEG-HS  372 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~dg~i~iwd~~~~~~~~~--~~~~~~~~~-h~  372 (496)
                      +.|++|++||++.+.......+.+|...|.+++|+| +  +.+|++|+.|++|++||++.......  ..+...+.. |.
T Consensus       172 s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~  250 (330)
T 2hes_X          172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK-TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK  250 (330)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred             cCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC-CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence            999999999998764335667789999999999999 6  67899999999999999976211000  023444544 89


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE-EEecCCCC-CcceEEecCC-CCcEEEEe
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF-FQHAGHRD-KVVDFHWNAS-DPWTVVSV  449 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~-~V~~~~~~p~-~~~l~~s~  449 (496)
                      ..|.+++|++++  +|++++.||.|+|||+....             ...+ ....+|.. .|.+++|+|. +..++||+
T Consensus       251 ~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~~-------------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~  315 (330)
T 2hes_X          251 RQVYNVAWGFNG--LIASVGADGVLAVYEEVDGE-------------WKVFAKRALCHGVYEINVVKWLELNGKTILATG  315 (330)
T ss_dssp             SCEEEEEECTTS--CEEEEETTSCEEEEEEETTE-------------EEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred             cceEEEEEcCCC--EEEEEeCCCEEEEEEcCCCc-------------eEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence            999999999765  46799999999999986521             1122 23467887 8999999994 33456655


Q ss_pred             cCCCCCCCCCCeEEEeecC
Q 010997          450 SDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +.       ||+|+||++.
T Consensus       316 s~-------Dg~v~~W~~~  327 (330)
T 2hes_X          316 GD-------DGIVNFWSLE  327 (330)
T ss_dssp             ET-------TSEEEEEEC-
T ss_pred             cC-------CCcEEEEEec
Confidence            54       5999999987

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.2e-37  Score=292.04  Aligned_cols=268  Identities=15%  Similarity=0.273  Sum_probs=218.4

Q ss_pred             CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997           95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP  174 (496)
Q Consensus        95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~  174 (496)
                      ++.+..+++|++.....                ..........+|.+.|++++|+| ++.+|++|+.|++|+|||+.++ 
T Consensus        36 ~s~D~~v~~W~~~~~~~----------------~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~-   97 (319)
T 3frx_A           36 ASRDKTLISWKLTGDDQ----------------KFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATG-   97 (319)
T ss_dssp             EETTSEEEEEEEEEETT----------------EEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT-
T ss_pred             ecCCccEEEecCCCCCc----------------cccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCC-
Confidence            45788999998753111                00112345568999999999999 8899999999999999999887 


Q ss_pred             CccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997          175 NRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK  254 (496)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (496)
                                 +....+.+|.. .|.+++|+|++.+|++|+.|++|++||++..                          
T Consensus        98 -----------~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--------------------------  139 (319)
T 3frx_A           98 -----------ETYQRFVGHKS-DVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--------------------------  139 (319)
T ss_dssp             -----------EEEEEEECCSS-CEEEEEECTTSCEEEEEETTSCEEEEETTSC--------------------------
T ss_pred             -----------CeeEEEccCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------------------
Confidence                       66778899998 6999999999999999999999999998632                          


Q ss_pred             CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-----CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEE
Q 010997          255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-----AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV  329 (496)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i  329 (496)
                                     .+..+.+|...|.++.|+|..     ...|++++.|+.|++||++..+  ....+.+|...|+++
T Consensus       140 ---------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~  202 (319)
T 3frx_A          140 ---------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFIGHNSNINTL  202 (319)
T ss_dssp             ---------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEECCCCSCEEEE
T ss_pred             ---------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeecCCCCcEEEE
Confidence                           135677899999999999853     2489999999999999998876  566677999999999


Q ss_pred             EecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCccc
Q 010997          330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV  409 (496)
Q Consensus       330 ~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~  409 (496)
                      +|+| ++.+|++|+.||.|++||+++      +.++..+.. ...|.+++|+|++. +|++++ ++.+++|++...    
T Consensus       203 ~~sp-~g~~l~s~~~dg~i~iwd~~~------~~~~~~~~~-~~~v~~~~~sp~~~-~la~~~-~~~i~v~~~~~~----  268 (319)
T 3frx_A          203 TASP-DGTLIASAGKDGEIMLWNLAA------KKAMYTLSA-QDEVFSLAFSPNRY-WLAAAT-ATGIKVFSLDPQ----  268 (319)
T ss_dssp             EECT-TSSEEEEEETTCEEEEEETTT------TEEEEEEEC-CSCEEEEEECSSSS-EEEEEE-TTEEEEEEETTE----
T ss_pred             EEcC-CCCEEEEEeCCCeEEEEECCC------CcEEEEecC-CCcEEEEEEcCCCC-EEEEEc-CCCcEEEEeCcC----
Confidence            9999 999999999999999999998      677888875 46899999999998 456666 456999998763    


Q ss_pred             CCCCCCCCCCCeeEEEe--------cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          410 EQGPRTTNYPAGLFFQH--------AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       410 ~~~~~~~~~~~~~~~~~--------~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                                 .++..+        ..|...|.+++|+|++.+++        +|+.||.|+||++.
T Consensus       269 -----------~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~--------sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          269 -----------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF--------AGYTDNVIRVWQVM  316 (319)
T ss_dssp             -----------EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE--------EEETTSCEEEEEEE
T ss_pred             -----------eeeeccCccccccccCcCcceeEEEECCCCCEEE--------EeecCceEEEEEEe
Confidence                       111111        23566789999999988765        45556999999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-38  Score=308.36  Aligned_cols=286  Identities=17%  Similarity=0.312  Sum_probs=225.9

Q ss_pred             CCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 010997           96 SVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN  175 (496)
Q Consensus        96 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~  175 (496)
                      +.+..+.||++.....                   .+....+.|.+.|++++|+| ++.+||+|+.||.|++||+.....
T Consensus        42 ~~d~~v~iw~~~~~~~-------------------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~  101 (416)
T 2pm9_A           42 STDSSLELWSLLAADS-------------------EKPIASLQVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANN  101 (416)
T ss_dssp             CCCCCCEEEESSSGGG-------------------CSCSCCCCCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTS
T ss_pred             CCCCeEEEEEccCCCC-------------------CcEEEEEecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccc
Confidence            6788899998643110                   01223457899999999999 888999999999999999987311


Q ss_pred             ccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997          176 RHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK  254 (496)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (496)
                              .......+.+|.. .|.+++|+|+ +++|++|+.||.|++||+.+........                   
T Consensus       102 --------~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------------------  153 (416)
T 2pm9_A          102 --------AINSMARFSNHSS-SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-------------------  153 (416)
T ss_dssp             --------CCCEEEECCCSSS-CCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------------------
T ss_pred             --------cccchhhccCCcc-ceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-------------------
Confidence                    0135667888987 6999999998 8899999999999999998653110000                   


Q ss_pred             CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccC------CCCeEE
Q 010997          255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH------DADLHC  328 (496)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~  328 (496)
                                  .......+..|...|.+++|+|++..+|++++.||.|++||+++++  ....+..+      ...|.+
T Consensus       154 ------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          154 ------------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             ------------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEE
T ss_pred             ------------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEE
Confidence                        0001123457889999999999965899999999999999999876  44455444      789999


Q ss_pred             EEecCCCCcEEEEEcCCC---cEEEEeCCCCCCCCCCCCceEec-cCCCCEEEEEEcC-CCCCEEEEEeCCCcEEEEECC
Q 010997          329 VDWNPLDDNLILTGSADN---SVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYE  403 (496)
Q Consensus       329 i~~sp~~~~~l~sgs~dg---~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~l~~sp-~~~~llas~~~dg~i~iwd~~  403 (496)
                      ++|+|....+|++++.|+   .|++||+++..     .++..+. +|...|.+++|+| ++. +|++++.|+.|++||+.
T Consensus       220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDNDPSILIWDLRNAN-----TPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             EEECSSCTTEEEEEECCSSSCCCCEEETTSTT-----SCSBCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSS
T ss_pred             EEECCCCCCEEEEEECCCCCceEEEEeCCCCC-----CCcEEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCC
Confidence            999993347999999999   99999999831     5677787 8999999999999 676 56799999999999998


Q ss_pred             CCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCC
Q 010997          404 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLI  471 (496)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~  471 (496)
                      ..               ..+..+.+|...|.+++|+|+++.++++++       .||.|+||++....
T Consensus       294 ~~---------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~-------~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          294 SA---------------EQLSQFPARGNWCFKTKFAPEAPDLFACAS-------FDNKIEVQTLQNLT  339 (416)
T ss_dssp             SC---------------CEEEEEECSSSCCCCEEECTTCTTEEEECC-------SSSEEEEEESCCCC
T ss_pred             CC---------------ccceeecCCCCceEEEEECCCCCCEEEEEe-------cCCcEEEEEccCCC
Confidence            74               466777899999999999999866777554       45999999998643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.4e-38  Score=300.91  Aligned_cols=260  Identities=20%  Similarity=0.327  Sum_probs=203.1

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEE
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLS  213 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~s  213 (496)
                      ..+|.+.|++++|+| ++++||+|+.|++|+|||+.++.          ......+.+|.+ .|++++|+|  ++++|+|
T Consensus         9 ~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~----------~~~~~~l~gH~~-~V~~v~~~~~~~~~~l~s   76 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGG----------QILIADLRGHEG-PVWQVAWAHPMYGNILAS   76 (316)
T ss_dssp             -----CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTE----------EEEEEEEECCSS-CEEEEEECCGGGSSCEEE
T ss_pred             cccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCC----------cEEEEEEcCCCc-cEEEEEeCCCCCCCEEEE
Confidence            358999999999999 88999999999999999997651          123567899998 799999986  4889999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC-Cc
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS-AQ  292 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~  292 (496)
                      |+.|++|++||++++..                                      .....+.+|...|++++|+|++ ..
T Consensus        77 ~s~D~~v~iWd~~~~~~--------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~  118 (316)
T 3bg1_A           77 CSYDRKVIIWREENGTW--------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGL  118 (316)
T ss_dssp             EETTSCEEEECCSSSCC--------------------------------------CEEEEECCCSSCCCEEEECCTTTCS
T ss_pred             EECCCEEEEEECCCCcc--------------------------------------eEEEEccCCCCceEEEEECCCCCCc
Confidence            99999999999875321                                      1235577899999999999983 27


Q ss_pred             eEEEEcCCCeEEEEEccCCCc-cceeeeccCCCCeEEEEecCCC-----------------CcEEEEEcCCCcEEEEeCC
Q 010997          293 EFCSVGDDSCLILWDARVGTS-PVIKVEKAHDADLHCVDWNPLD-----------------DNLILTGSADNSVRMFDRR  354 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~i~~sp~~-----------------~~~l~sgs~dg~i~iwd~~  354 (496)
                      +|++|+.|++|++||++.... .....+.+|...|.+++|+| +                 +.+|++|+.|+.|++||++
T Consensus       119 ~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~  197 (316)
T 3bg1_A          119 ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP-AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEE  197 (316)
T ss_dssp             CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC-CCCC------CCSCCCCCCCBEECCBTTSBCCEEEEC
T ss_pred             EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc-ccCCccccccccccCccccceEEEecCCCeEEEEEeC
Confidence            899999999999999987631 12344568999999999999 4                 4689999999999999997


Q ss_pred             CCCCCCCCCCceEeccCCCCEEEEEEcCCC---CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC
Q 010997          355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  431 (496)
Q Consensus       355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~---~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  431 (496)
                      ....   ..++..+.+|...|.+++|+|++   ..+||+++.|+.|+|||+.......        ....   .+.+|..
T Consensus       198 ~~~~---~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~--------~~~~---~~~~~~~  263 (316)
T 3bg1_A          198 EDGQ---WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT--------WSPK---LLHKFND  263 (316)
T ss_dssp             TTSC---EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC--------CBCC---EEEECSS
T ss_pred             CCCc---cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc--------hhhh---hhhcCCC
Confidence            5110   13567788999999999999986   2368899999999999997631100        0011   2346788


Q ss_pred             CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .|.+++|+|++..++        +|+.||+|+||++.
T Consensus       264 ~v~~v~~sp~g~~la--------s~~~D~~v~lw~~~  292 (316)
T 3bg1_A          264 VVWHVSWSITANILA--------VSGGDNKVTLWKES  292 (316)
T ss_dssp             CEEEEEECTTTCCEE--------EEESSSCEEEEEEC
T ss_pred             cEEEEEEcCCCCEEE--------EEcCCCeEEEEEEC
Confidence            999999999987655        44456999999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.3e-37  Score=315.55  Aligned_cols=262  Identities=25%  Similarity=0.484  Sum_probs=228.0

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ...+|.+.|.+++|+| ++.+|++++.||.|++||+...             ....+.+|.. .|.+++|+|++++|++|
T Consensus       298 ~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~-------------~~~~~~~~~~-~v~~~~~s~~g~~l~~~  362 (577)
T 2ymu_A          298 TLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQ-------------HLQTLTGHSS-SVWGVAFSPDGQTIASA  362 (577)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSC-------------EEEEECCCSS-CEEEEEECTTSSEEEEE
T ss_pred             EEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCC-------------eeEEEeCCCC-CEEEEEECCCCCEEEEE
Confidence            4568999999999999 8889999999999999997654             3456778887 68999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.||.|++||...                                         ..+..+.+|...|.+++|+|++ .+|
T Consensus       363 ~~dg~v~~~~~~~-----------------------------------------~~~~~~~~~~~~v~~~~~s~dg-~~l  400 (577)
T 2ymu_A          363 SDDKTVKLWNRNG-----------------------------------------QLLQTLTGHSSSVRGVAFSPDG-QTI  400 (577)
T ss_dssp             ETTSEEEEEETTC-----------------------------------------CEEEEEECCSSCEEEEEECTTS-SCE
T ss_pred             eCCCEEEEEcCCC-----------------------------------------CEEEEecCCCCCeEEEEECCCC-CEE
Confidence            9999999999642                                         1236678899999999999999 789


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      ++++.|+.|++||.. ++  ....+.+|...|++++|+| ++.+|++++.|+.|++||..       +..+..+.+|...
T Consensus       401 ~~~~~d~~v~~~~~~-~~--~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~-------~~~~~~~~~~~~~  469 (577)
T 2ymu_A          401 ASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSS  469 (577)
T ss_dssp             EEEETTSEEEEECTT-CC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-------SCEEEEEECCSSC
T ss_pred             EEEeCCCEEEEEeCC-CC--EEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECC-------CCEEEEEcCCCCC
Confidence            999999999999953 33  5667789999999999999 99999999999999999965       4788899999999


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  454 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~  454 (496)
                      |.+++|+|++. +||+++.|+.|++||...                .++..+.+|...|++++|+|++.+|+        
T Consensus       470 v~~~~~spd~~-~las~~~d~~i~iw~~~~----------------~~~~~~~~h~~~v~~l~~s~dg~~l~--------  524 (577)
T 2ymu_A          470 VRGVAFSPDGQ-TIASASDDKTVKLWNRNG----------------QLLQTLTGHSSSVRGVAFSPDGQTIA--------  524 (577)
T ss_dssp             EEEEEECTTSC-EEEEEETTSEEEEEETTS----------------CEEEEEECCSSCEEEEEECTTSSCEE--------
T ss_pred             EEEEEEcCCCC-EEEEEeCCCEEEEEcCCC----------------CEEEEEeCCCCCEEEEEEcCCCCEEE--------
Confidence            99999999998 568999999999999643                45667889999999999999988765        


Q ss_pred             CCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          455 STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       455 sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +++.||.|+|||..       ++++.++.+|.++|++++|+|
T Consensus       525 s~~~dg~v~lwd~~-------~~~~~~~~~h~~~v~~~~fs~  559 (577)
T 2ymu_A          525 SASDDKTVKLWNRN-------GQLLQTLTGHSSSVWGVAFSP  559 (577)
T ss_dssp             EEETTSEEEEECTT-------SCEEEEEECCSSCEEEEEECT
T ss_pred             EEECcCEEEEEeCC-------CCEEEEEcCCCCCEEEEEEcC
Confidence            44456999999965       567788899999999999998

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-36  Score=290.67  Aligned_cols=284  Identities=19%  Similarity=0.289  Sum_probs=213.1

Q ss_pred             CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997           95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP  174 (496)
Q Consensus        95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~  174 (496)
                      ++.+..++||++.....              ............+|.+.|++++|+| ++.+|++|+.|++|+|||+.++ 
T Consensus        45 gs~D~~v~iWd~~~~~~--------------~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~-  108 (343)
T 2xzm_R           45 GSRDKTVMIWKLYEEEQ--------------NGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTG-  108 (343)
T ss_dssp             EETTSCEEEEEECSSCC--------------SSBSEEEEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSS-
T ss_pred             EcCCCEEEEEECCcCCc--------------ccccccccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCC-
Confidence            45778899998743111              0000112334568999999999999 8889999999999999999887 


Q ss_pred             CccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997          175 NRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK  254 (496)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (496)
                                 +....+.+|.. .|++++|+|++++|++|+.|++|++||+.......                      
T Consensus       109 -----------~~~~~~~~h~~-~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~----------------------  154 (343)
T 2xzm_R          109 -----------TTYKRFVGHQS-EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS----------------------  154 (343)
T ss_dssp             -----------CEEEEEECCCS-CEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEE----------------------
T ss_pred             -----------cEEEEEcCCCC-cEEEEEECCCCCEEEEEcCCCEEEEEeccCCceee----------------------
Confidence                       56678899988 69999999999999999999999999986321100                      


Q ss_pred             CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC---------ceEEEEcCCCeEEEEEccCCCccceeeeccCCCC
Q 010997          255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA---------QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD  325 (496)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  325 (496)
                                      .....+|...|.+++|+|++.         .+|++++.||.|++||.. ..  ....+.+|...
T Consensus       155 ----------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~~~~~~~h~~~  215 (343)
T 2xzm_R          155 ----------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQ--IRYTFKAHESN  215 (343)
T ss_dssp             ----------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TE--EEEEEECCSSC
T ss_pred             ----------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cc--eeEEEcCcccc
Confidence                            011236888999999999862         579999999999999943 22  45567789999


Q ss_pred             eEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          326 LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       326 v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      |++++|+| ++.+|++|+.||.|++||++..     ..+...+. +...|.+++|+|++. ++++ +.|+.|++||+...
T Consensus       216 v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~-----~~~~~~~~-~~~~v~~v~~sp~~~-~la~-~~d~~v~iw~~~~~  286 (343)
T 2xzm_R          216 VNHLSISP-NGKYIATGGKDKKLLIWDILNL-----TYPQREFD-AGSTINQIAFNPKLQ-WVAV-GTDQGVKIFNLMTQ  286 (343)
T ss_dssp             EEEEEECT-TSSEEEEEETTCEEEEEESSCC-----SSCSEEEE-CSSCEEEEEECSSSC-EEEE-EESSCEEEEESSSC
T ss_pred             ceEEEECC-CCCEEEEEcCCCeEEEEECCCC-----cccceeec-CCCcEEEEEECCCCC-EEEE-ECCCCEEEEEeCCC
Confidence            99999999 9999999999999999999652     23444443 566799999999987 5544 45888999999764


Q ss_pred             Cccc--CCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          406 GKKV--EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       406 ~~~~--~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ....  ....    .+........+|...|.+++|+|++.+++        +|+.||+|++|++.
T Consensus       287 ~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~sp~g~~l~--------sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          287 SKAPVCTIEA----EPITKAEGQKGKNPQCTSLAWNALGKKLF--------AGFTDGVIRTFSFE  339 (343)
T ss_dssp             CSCSEEECCC----CSGGGBTTBCCSCCCEEEEEECSSSCCEE--------EEETTSEEEEEEEE
T ss_pred             CCCceEEeec----CcchhhhhhcCCCCceEEEEECCCCCeEE--------EecCCceEEEEEEE
Confidence            2211  0000    00000111237888999999999998765        55556999999986

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-37  Score=307.71  Aligned_cols=329  Identities=13%  Similarity=0.084  Sum_probs=228.6

Q ss_pred             CCCCcceEeccCCcccC-CCcceEEEEEEee--------------cCCCCCCeEEEEEEeccCcchhhhccccccCcccC
Q 010997           63 LVWPSLSCRWGPQLEQA-TYKNRQRLYLSEQ--------------TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEAR  127 (496)
Q Consensus        63 ~~wps~~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~  127 (496)
                      +..+..+++|.|.-... .....+.|.+|+.              ++++.++.+.||++.....                
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~----------------  195 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL----------------  195 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC----------------
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC----------------
Confidence            36678899999862110 0012256666652              4466778888888643110                


Q ss_pred             CcccceEEEecCCCceeEEEecCC-----CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceee
Q 010997          128 SPFVKKHKTIIHPGEVNRIRELPQ-----NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFAL  202 (496)
Q Consensus       128 ~~~~~~~~~~~h~~~V~~l~~~p~-----~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l  202 (496)
                       .......+.+|.+.|++++|+|.     ++.+||+++.||+|+|||+.......... .....+...+.+|.. .|+++
T Consensus       196 -~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-~~~~~p~~~l~~h~~-~v~sv  272 (524)
T 2j04_B          196 -HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-KMCEKPSLTLSLADS-LITTF  272 (524)
T ss_dssp             -CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-ECCCSCSEEECCTTT-CEEEE
T ss_pred             -CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-eeecCceEEEEcCCC-CEEEE
Confidence             00112234567899999999994     25799999999999999998763210000 001145567889987 79999


Q ss_pred             eecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCcee
Q 010997          203 AMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE  282 (496)
Q Consensus       203 ~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  282 (496)
                      +|++++ .|++|+.||+|++||++++.                                       .+...+.+|...|.
T Consensus       273 ~~s~~~-~lasgs~DgtV~lWD~~~~~---------------------------------------~~~~~~~~H~~~V~  312 (524)
T 2j04_B          273 DFLSPT-TVVCGFKNGFVAEFDLTDPE---------------------------------------VPSFYDQVHDSYIL  312 (524)
T ss_dssp             EESSSS-EEEEEETTSEEEEEETTBCS---------------------------------------SCSEEEECSSSCEE
T ss_pred             EecCCC-eEEEEeCCCEEEEEECCCCC---------------------------------------CceEEeecccccEE
Confidence            999864 89999999999999997531                                       12255788999999


Q ss_pred             EE--EEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCC--CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          283 DV--TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       283 ~l--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      +|  .|+|++..+|+||+.|++|+|||+++++  ....+.+|..  .|.+++|+| ++..|++++.|++|++||++.   
T Consensus       313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~--~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~---  386 (524)
T 2j04_B          313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA--TTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRA---  386 (524)
T ss_dssp             EEEEECCTTSCCEEEEEETTSEEEEECGGGHH--HHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTC---
T ss_pred             EEEEEcCCCCCeEEEEeccCCeEEEEECCCCC--cccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcc---
Confidence            99  4667654689999999999999999876  3334445543  588999999 888999999999999999998   


Q ss_pred             CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC---------------CCCCCCC------
Q 010997          359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE---------------QGPRTTN------  417 (496)
Q Consensus       359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~------  417 (496)
                         +.++..+.+|.+.|++|+|+|+++. |++|+.||+|++||+... ....               .....+.      
T Consensus       387 ---~~~~~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~  461 (524)
T 2j04_B          387 ---AFAVHPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRID  461 (524)
T ss_dssp             ---TTCCEEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEEC
T ss_pred             ---cccceeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEcc
Confidence               6778889999999999999999995 679999999999997542 1110               0000000      


Q ss_pred             ---------CCCeeEEEecCCCCCcceEEecCCCC--cEEEEecCCCCCCCCCCeEEEeecC
Q 010997          418 ---------YPAGLFFQHAGHRDKVVDFHWNASDP--WTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       418 ---------~~~~~~~~~~~h~~~V~~~~~~p~~~--~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                               .....+..+.+|...|.+++|+|++.  .++|+++       .||.|+||++.
T Consensus       462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~-------~~g~vrlw~l~  516 (524)
T 2j04_B          462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSN-------SAGLLTLEYLS  516 (524)
T ss_dssp             CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEEC-------TTSEEEEEECS
T ss_pred             CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhc-------cCceEEEEEcc
Confidence                     01234566788999999999999874  4666444       45999999998

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.6e-37  Score=294.10  Aligned_cols=298  Identities=19%  Similarity=0.287  Sum_probs=220.5

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .+.+|.+.|++|+|+|+++++||||+.||+|+|||+.+.....       ..+...+.+|.. .|.+++|+|++++|++|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~-------~~~~~~l~~h~~-~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY-------GIPQRALRGHSH-FVSDVVISSDGQFALSG  104 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS-------EEEEEEECCCSS-CEEEEEECTTSSEEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc-------ceeeEEEeCCCC-CEEEEEECCCCCEEEEE
Confidence            4568999999999999768999999999999999998763221       134567889988 79999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccc----cccCCCCCceeccCCCCCCCCCCCCCCCCcC-CeeeeecCCCceeEEEEccC
Q 010997          215 GKDKSVVLWSIQDHITSSATDPAT----AKSAGSSGSIIKQSPKPGDGNDKAADGPSVG-PRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~  289 (496)
                      +.|+.|++|+..............    ..........+.  ....++.+.+|+..... ....+.+|...+..++|+++
T Consensus       105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  182 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV--SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN  182 (340)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEE--EEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred             cccccceEEeecccceeeeecCCCCceeEEEEeecCccce--eecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence            999999999998754322111100    000000001111  11234455566654433 23445679999999999987


Q ss_pred             CC-ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          290 SA-QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       290 ~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      +. .++++++.|+.|++||+++.+  ....+.+|...|++++|+| ++.+|++|+.||.|++||+++      ..++..+
T Consensus       183 ~~~~~~~s~~~d~~i~i~d~~~~~--~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~------~~~~~~~  253 (340)
T 4aow_A          183 SSNPIIVSCGWDKLVKVWNLANCK--LKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNE------GKHLYTL  253 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTT------TEEEEEE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCc--eeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEecc------Cceeeee
Confidence            53 467899999999999999877  6677789999999999999 999999999999999999998      6777777


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s  448 (496)
                      .. ...|.+++|+|++. ++ +++.|+.|+|||++........      ..........+|...|++++|+|++.+++  
T Consensus       254 ~~-~~~v~~~~~~~~~~-~~-~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--  322 (340)
T 4aow_A          254 DG-GDIINALCFSPNRY-WL-CAATGPSIKIWDLEGKIIVDEL------KQEVISTSSKAEPPQCTSLAWSADGQTLF--  322 (340)
T ss_dssp             EC-SSCEEEEEECSSSS-EE-EEEETTEEEEEETTTTEEEEEE------CCC-------CCCCCEEEEEECTTSSEEE--
T ss_pred             cC-CceEEeeecCCCCc-ee-eccCCCEEEEEECCCCeEEEec------cccceeeeccCCCCCEEEEEECCCCCEEE--
Confidence            64 56899999999876 44 6667999999999864211110      01122334567899999999999887655  


Q ss_pred             ecCCCCCCCCCCeEEEeecC
Q 010997          449 VSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       449 ~s~d~~sgg~Dg~i~iw~~~  468 (496)
                            ||+.||.|+|||++
T Consensus       323 ------sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          323 ------AGYTDNLVRVWQVT  336 (340)
T ss_dssp             ------EEETTSCEEEEEEE
T ss_pred             ------EEeCCCEEEEEeCC
Confidence                  45556999999998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.1e-37  Score=306.42  Aligned_cols=284  Identities=14%  Similarity=0.160  Sum_probs=216.9

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC-CCCceEE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLS  213 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~s  213 (496)
                      ...+|...|+||+|+|.++++||+|+.||.|+|||+.+..          ......+.+|.+ .|++|+|+| ++.+|+|
T Consensus       114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~----------~~~~~~~~gH~~-~V~~l~f~p~~~~~l~s  182 (435)
T 4e54_B          114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD----------KPTFIKGIGAGG-SITGLKFNPLNTNQFYA  182 (435)
T ss_dssp             EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS----------CCEEECCCSSSC-CCCEEEECSSCTTEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC----------ceeEEEccCCCC-CEEEEEEeCCCCCEEEE
Confidence            4457999999999999888999999999999999998762          123345668987 799999998 5789999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.||+|++||+++.....                                      ......+...+.+++|+|++ .+
T Consensus       183 ~s~D~~v~iwd~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~-~~  223 (435)
T 4e54_B          183 SSMEGTTRLQDFKGNILRV--------------------------------------FASSDTINIWFCSLDVSASS-RM  223 (435)
T ss_dssp             ECSSSCEEEEETTSCEEEE--------------------------------------EECCSSCSCCCCCEEEETTT-TE
T ss_pred             EeCCCEEEEeeccCCceeE--------------------------------------EeccCCCCccEEEEEECCCC-CE
Confidence            9999999999997532210                                      01112334567899999998 79


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      |++|+.||.|++||++...   +..+.+|...|++++|+|....+|++|+.|+.|+|||+++...   ...+....+|..
T Consensus       224 l~~g~~dg~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~---~~~~~~~~~h~~  297 (435)
T 4e54_B          224 VVTGDNVGNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG---KASFLYSLPHRH  297 (435)
T ss_dssp             EEEECSSSBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS---SSCCSBCCBCSS
T ss_pred             EEEEeCCCcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc---cceEEEeeeccc
Confidence            9999999999999997543   4566789999999999995556899999999999999998431   122334467999


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC------CcceEEecCCCCcEEE
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD------KVVDFHWNASDPWTVV  447 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------~V~~~~~~p~~~~l~~  447 (496)
                      .|++++|+|++.+ |++++.||.|+|||+.....               .....+|..      .+..+.|+|++..+++
T Consensus       298 ~v~~~~~spdg~~-l~s~~~D~~i~iwd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (435)
T 4e54_B          298 PVNAACFSPDGAR-LLTTDQKSEIRVYSASQWDC---------------PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV  361 (435)
T ss_dssp             CEEECCBCTTSSE-EEEEESSSCEEEEESSSSSS---------------EEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred             cccceeECCCCCe-eEEEcCCCEEEEEECCCCcc---------------ceEEecccccccccceeEEEEEcCCCCEEEE
Confidence            9999999999985 67999999999999987522               222222221      2445678888777666


Q ss_pred             EecCCC----CCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEe-ccCC
Q 010997          448 SVSDDC----DSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISC-TSKP  496 (496)
Q Consensus       448 s~s~d~----~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~-~~sP  496 (496)
                      +.+.|.    .++..++.|++||..      +++.+..+ .+|...|.++ +|||
T Consensus       362 ~~~~d~~~~~~~~~~~~~i~iwd~~------~g~~~~~l~~~~~~~v~s~~~fsp  410 (435)
T 4e54_B          362 GRYPDPNFKSCTPYELRTIDVFDGN------SGKMMCQLYDPESSGISSLNEFNP  410 (435)
T ss_dssp             ECCCCTTSCCSSTTCCCCEEEECSS------SCCEEEEECCSSCCCCCCEEEECT
T ss_pred             EEcCCCCeEEEEecCCCEEEEEECC------CCcEEEEEeCCCCCcEEEEEEECC
Confidence            655542    245566899999998      55655554 4678888887 6887

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.8e-36  Score=281.69  Aligned_cols=250  Identities=20%  Similarity=0.394  Sum_probs=209.2

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ...+|...|.+++|+| ++++|++|+.||.|++||+.+.            +....+.+|.. .|.+++|+|++++|++|
T Consensus        60 ~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~s~  125 (312)
T 4ery_A           60 TISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSN-YVFCCNFNPQSNLIVSG  125 (312)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEEE
T ss_pred             hhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEECCCC------------cEEEEEcCCCC-CEEEEEEcCCCCEEEEE
Confidence            3457999999999999 8899999999999999999887            66778899987 69999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.||.|++||++++.                                        .+..+..|..+|.+++|+|++ .+|
T Consensus       126 ~~d~~i~iwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~-~~l  164 (312)
T 4ery_A          126 SFDESVRIWDVKTGK----------------------------------------CLKTLPAHSDPVSAVHFNRDG-SLI  164 (312)
T ss_dssp             ETTSCEEEEETTTCC----------------------------------------EEEEECCCSSCEEEEEECTTS-SEE
T ss_pred             eCCCcEEEEECCCCE----------------------------------------EEEEecCCCCcEEEEEEcCCC-CEE
Confidence            999999999997542                                        235677899999999999998 789


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      ++++.||.|++||+++++. .......+...+.+++|+| ++.+|++++.||.|++||+++      +..+..+.+|...
T Consensus       165 ~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~  236 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNE  236 (312)
T ss_dssp             EEEETTSCEEEEETTTCCE-EEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTT------TEEEEEECSSCCS
T ss_pred             EEEeCCCcEEEEECCCCce-eeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCC------CcEEEEEEecCCc
Confidence            9999999999999998772 2223345678899999999 899999999999999999998      7788888888765


Q ss_pred             EE--EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          375 VL--CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       375 i~--~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      +.  ...|++.+..+|++|+.||.|++||+...               .++..+.+|...|.+++|+|++..++ +++  
T Consensus       237 ~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---------------~~~~~~~~h~~~v~~~~~~p~~~~l~-s~~--  298 (312)
T 4ery_A          237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---------------EIVQKLQGHTDVVISTACHPTENIIA-SAA--  298 (312)
T ss_dssp             SSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECSSSSEEE-EEE--
T ss_pred             eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---------------hhhhhhhccCCcEEEEeecCcCCceE-EEE--
Confidence            33  33455443346789999999999999874               56777899999999999999877554 432  


Q ss_pred             CCCCCCCCeEEEeecC
Q 010997          453 CDSTGGGGTLQIWRMS  468 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~  468 (496)
                         .+.|++|++|+..
T Consensus       299 ---~~~d~~i~~W~~d  311 (312)
T 4ery_A          299 ---LENDKTIKLWKSD  311 (312)
T ss_dssp             ---CTTTCCEEEEECC
T ss_pred             ---ccCCccEEEecCC
Confidence               1246999999875

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-37  Score=312.41  Aligned_cols=291  Identities=11%  Similarity=0.063  Sum_probs=209.4

Q ss_pred             EEEecCCCceeEEEecCCC-C-------cEEEE-------------------EeCCCcEEEEeCCCCCCccccCCCCCCC
Q 010997          134 HKTIIHPGEVNRIRELPQN-T-------KIVAT-------------------HTDSPDVLIWDVEAQPNRHAVLGATNSR  186 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~-~-------~~lat-------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~  186 (496)
                      ..++.+.+.|.+++|+|.. +       ++||+                   ++.|++|+|||+.+.....        .
T Consensus       127 ~~~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~--------~  198 (524)
T 2j04_B          127 GFIYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC--------V  198 (524)
T ss_dssp             EEEEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE--------E
T ss_pred             eEEEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc--------e
Confidence            3455688999999999942 1       56666                   4578899999997762110        1


Q ss_pred             CceEEecCCCCcceeeeecCC------CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCC
Q 010997          187 PDLILTGHQDNAEFALAMCPT------EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGND  260 (496)
Q Consensus       187 ~~~~l~~h~~~~v~~l~~~p~------~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (496)
                      ....+.+|.+ .|.+++|+|+      +.+||+|+.||+|++||+..+.......                         
T Consensus       199 ~~~~l~~~~~-~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-------------------------  252 (524)
T 2j04_B          199 KVQTIVHSFG-EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-------------------------  252 (524)
T ss_dssp             EEEEEEECCC-SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-------------------------
T ss_pred             EEEEEEecCC-cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-------------------------
Confidence            1234666766 6999999997      5699999999999999997543210000                         


Q ss_pred             CCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEE--EecCCCC-c
Q 010997          261 KAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCV--DWNPLDD-N  337 (496)
Q Consensus       261 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i--~~sp~~~-~  337 (496)
                          .....+...+.+|...|++++|++++  .|++|+.||+|++||++++.. ....+.+|...|++|  +|+| ++ .
T Consensus       253 ----~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~-~g~~  324 (524)
T 2j04_B          253 ----KMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSD-FEDT  324 (524)
T ss_dssp             ----ECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCT-TSCC
T ss_pred             ----eeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCC-CCCe
Confidence                00112335678899999999999854  799999999999999987653 244567899999999  5777 76 8


Q ss_pred             EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC--CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC
Q 010997          338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  415 (496)
Q Consensus       338 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~  415 (496)
                      +||+|+.|++|+|||+++      +.++..+.+|..  .|.+++|+|++.. |++++.|+.|++||++..          
T Consensus       325 ~laS~S~D~tvklWD~~~------~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d~tv~lwd~~~~----------  387 (524)
T 2j04_B          325 VVSTVAVDGYFYIFNPKD------IATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGASSLRAVPSRAA----------  387 (524)
T ss_dssp             EEEEEETTSEEEEECGGG------HHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSSSEEEEEETTCT----------
T ss_pred             EEEEeccCCeEEEEECCC------CCcccccccccccCcccceEeCCCcCe-EEEeCCCCcEEEEECccc----------
Confidence            999999999999999998      667777777653  5889999999884 679999999999999874          


Q ss_pred             CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC--------------------C-
Q 010997          416 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR--------------------P-  474 (496)
Q Consensus       416 ~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~--------------------~-  474 (496)
                           .++..+.+|.+.|++|+|+|+++.++        ||+.||+|+||++....+.                    + 
T Consensus       388 -----~~~~~l~gH~~~V~sva~Sp~g~~l~--------Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~  454 (524)
T 2j04_B          388 -----FAVHPLVSRETTITAIGVSRLHPMVL--------AGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIK  454 (524)
T ss_dssp             -----TCCEEEEECSSCEEEEECCSSCCBCE--------EEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSS
T ss_pred             -----ccceeeecCCCceEEEEeCCCCCeEE--------EEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCC
Confidence                 23345668999999999999988755        4455699999986432111                    1 


Q ss_pred             -----------------chHHHHHHHhccceEEEeccCC
Q 010997          475 -----------------QDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       475 -----------------~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                                       .+..+.++.+|..+|.+|+|+|
T Consensus       455 g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp  493 (524)
T 2j04_B          455 DDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE  493 (524)
T ss_dssp             SCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred             CCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence                             1455677788888888888887

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-36  Score=296.64  Aligned_cols=277  Identities=14%  Similarity=0.219  Sum_probs=222.0

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      +|.+.|++++|+| ++++||+|+.||.|++|| .++            .....+.+|.. .|.+++|+|++++|++++.|
T Consensus       106 ~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d  170 (425)
T 1r5m_A          106 KTTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTG------------ALLNVLNFHRA-PIVSVKWNKDGTHIISMDVE  170 (425)
T ss_dssp             --CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TTS------------CEEEEECCCCS-CEEEEEECTTSSEEEEEETT
T ss_pred             CCCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCC------------CeeeeccCCCc-cEEEEEECCCCCEEEEEecC
Confidence            4788999999999 889999999999999999 333            45667888887 69999999999999999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      |.|++||+.++............                         ...............+.+++|+|++  .++++
T Consensus       171 ~~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  223 (425)
T 1r5m_A          171 NVTILWNVISGTVMQHFELKETG-------------------------GSSINAENHSGDGSLGVDVEWVDDD--KFVIP  223 (425)
T ss_dssp             CCEEEEETTTTEEEEEECCC----------------------------------------CCCBSCCEEEETT--EEEEE
T ss_pred             CeEEEEECCCCcEEEEeeccccC-------------------------ccceeeccccCCcceeeEEEEcCCC--EEEEE
Confidence            99999999865432211110000                         0000001111222338999999976  68999


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  377 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~  377 (496)
                      +.||.|++||++.+.  ....+..|...|.+++|+| ++.+|++++.||.|++||+++      +..+..+..|...|.+
T Consensus       224 ~~~g~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~~  294 (425)
T 1r5m_A          224 GPKGAIFVYQITEKT--PTGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGN------GNSQNCFYGHSQSIVS  294 (425)
T ss_dssp             CGGGCEEEEETTCSS--CSEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSS------BSCSEEECCCSSCEEE
T ss_pred             cCCCeEEEEEcCCCc--eeeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCC------CccceEecCCCccEEE
Confidence            999999999999876  5566678999999999999 899999999999999999998      7888999999999999


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  457 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg  457 (496)
                      ++|+|++  +|++++.|+.|++||+...               ..+..+.+|...|.+++|+|++..++ +       |+
T Consensus       295 ~~~~~~~--~l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~i~~~~~s~~~~~l~-~-------~~  349 (425)
T 1r5m_A          295 ASWVGDD--KVISCSMDGSVRLWSLKQN---------------TLLALSIVDGVPIFAGRISQDGQKYA-V-------AF  349 (425)
T ss_dssp             EEEETTT--EEEEEETTSEEEEEETTTT---------------EEEEEEECTTCCEEEEEECTTSSEEE-E-------EE
T ss_pred             EEECCCC--EEEEEeCCCcEEEEECCCC---------------cEeEecccCCccEEEEEEcCCCCEEE-E-------EE
Confidence            9999998  5679999999999999874               56677788999999999999887654 3       34


Q ss_pred             CCCeEEEeecCCCCcCCchH--------------------HHHHHHhccc--eEEEeccCC
Q 010997          458 GGGTLQIWRMSDLIYRPQDE--------------------VLAELEKFKA--HVISCTSKP  496 (496)
Q Consensus       458 ~Dg~i~iw~~~~~~~~~~~~--------------------~~~~l~~h~~--~v~~~~~sP  496 (496)
                      .||.|++|++.      .+.                    .+..+.+|..  .|.+++|+|
T Consensus       350 ~dg~i~i~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  404 (425)
T 1r5m_A          350 MDGQVNVYDLK------KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC  404 (425)
T ss_dssp             TTSCEEEEECH------HHHC--------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred             CCCeEEEEECC------CCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC
Confidence            45999999998      555                    6778888876  999999987

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5e-36  Score=292.46  Aligned_cols=250  Identities=22%  Similarity=0.384  Sum_probs=204.1

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      .+...|++++|+| ++++||+|+.||.|+|||+.+.            +....+.+|.. .|++++|+|++++|++|+.|
T Consensus       121 ~~~~~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d  186 (393)
T 1erj_A          121 SSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENR------------KIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGD  186 (393)
T ss_dssp             CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECTTSSEEEEEETT
T ss_pred             CCceeEEEEEECC-CCCEEEEEcCCCeEEEEECCCC------------cEEEEEccCCC-CEEEEEEcCCCCEEEEecCC
Confidence            4556799999999 8899999999999999999887            56678899988 69999999999999999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      ++|++||++++...                                        ..+ .+...+.+++|+|.++.+|++|
T Consensus       187 ~~v~iwd~~~~~~~----------------------------------------~~~-~~~~~v~~~~~~~~~~~~l~~~  225 (393)
T 1erj_A          187 RTVRIWDLRTGQCS----------------------------------------LTL-SIEDGVTTVAVSPGDGKYIAAG  225 (393)
T ss_dssp             SEEEEEETTTTEEE----------------------------------------EEE-ECSSCEEEEEECSTTCCEEEEE
T ss_pred             CcEEEEECCCCeeE----------------------------------------EEE-EcCCCcEEEEEECCCCCEEEEE
Confidence            99999999764321                                        222 3556799999999444899999


Q ss_pred             cCCCeEEEEEccCCCccceeee-------ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC------CCCCC
Q 010997          298 GDDSCLILWDARVGTSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------GVGSP  364 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~------~~~~~  364 (496)
                      +.|+.|++||++++.  ....+       .+|...|.+++|+| ++.+|++|+.||.|++||++.....      ..+.+
T Consensus       226 s~d~~v~iwd~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~  302 (393)
T 1erj_A          226 SLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC  302 (393)
T ss_dssp             ETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC---------------CE
T ss_pred             cCCCcEEEEECCCCc--EEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcc
Confidence            999999999999876  33333       47899999999999 9999999999999999999863210      01345


Q ss_pred             ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC---
Q 010997          365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS---  441 (496)
Q Consensus       365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~---  441 (496)
                      ...+.+|...|.+++|+|++.+ |++|+.|+.|++||+...               ..+..+.+|...|.+++|++.   
T Consensus       303 ~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~iwd~~~~---------------~~~~~l~~h~~~v~~v~~~~~~~~  366 (393)
T 1erj_A          303 EVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSG---------------NPLLMLQGHRNSVISVAVANGSSL  366 (393)
T ss_dssp             EEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECSSCTT
T ss_pred             eEEEecccCcEEEEEECCCCCE-EEEEeCCCeEEEEECCCC---------------eEEEEECCCCCCEEEEEecCCcCc
Confidence            5678899999999999999985 679999999999999874               456678899999999999873   


Q ss_pred             --CCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          442 --DPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       442 --~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                        ...+++|++.       ||+|+||++.
T Consensus       367 ~p~~~~l~sgs~-------Dg~i~iW~~~  388 (393)
T 1erj_A          367 GPEYNVFATGSG-------DCKARIWKYK  388 (393)
T ss_dssp             CTTCEEEEEEET-------TSEEEEEEEE
T ss_pred             CCCCCEEEEECC-------CCcEEECccc
Confidence              2345665554       5999999987

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=284.49  Aligned_cols=307  Identities=17%  Similarity=0.282  Sum_probs=232.9

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      +..++.|.|.-        .+++... .....+..+.||++...                    ........+|.+.|++
T Consensus        20 ~v~~~~~~p~~--------~~l~~~~-s~~~~d~~v~iw~~~~~--------------------~~~~~~~~~~~~~v~~   70 (357)
T 3i2n_A           20 TVFDCKWVPCS--------AKFVTMG-NFARGTGVIQLYEIQHG--------------------DLKLLREIEKAKPIKC   70 (357)
T ss_dssp             CEEEEEECTTS--------SEEEEEE-C--CCCEEEEEEEECSS--------------------SEEEEEEEEESSCEEE
T ss_pred             ceEEEEEcCCC--------ceEEEec-CccCCCcEEEEEeCCCC--------------------cccceeeecccCcEEE
Confidence            66788888851        2343322 11123788999986421                    1223445689999999


Q ss_pred             EEecCCC--CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceee------eecCCCCceEEecCC
Q 010997          146 IRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFAL------AMCPTEPYVLSGGKD  217 (496)
Q Consensus       146 l~~~p~~--~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l------~~~p~~~~l~sg~~D  217 (496)
                      ++|+|..  +.+|++|+.||.|++||+.+..           .+...+.+|.. .|.++      +|+|++++|++|+.|
T Consensus        71 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~-~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           71 GTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKGHKE-IINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             EECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECCCSS-CEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             EEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEeccc-ceEEEeeccccccCCCccEEEEEeCC
Confidence            9999943  7899999999999999998872           26678889988 68999      567899999999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC----CceeEEE----EccC
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE----DTVEDVT----FCPS  289 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~----~~~~  289 (496)
                      |.|++||+.++..                                       +...+..|.    ..|.+++    |+|+
T Consensus       139 ~~i~vwd~~~~~~---------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~  179 (357)
T 3i2n_A          139 GTVKVWDPRQKDD---------------------------------------PVANMEPVQGENKRDCWTVAFGNAYNQE  179 (357)
T ss_dssp             SCEEEECTTSCSS---------------------------------------CSEEECCCTTSCCCCEEEEEEECCCC-C
T ss_pred             CeEEEEeCCCCCC---------------------------------------cceeccccCCCCCCceEEEEEEeccCCC
Confidence            9999999986431                                       113333333    3788888    6788


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC--CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      + .+|++++.||.|++||++++.  . .....|...|.+++|+|.  ++.+|++|+.||.|++||+++      +.++..
T Consensus       180 ~-~~l~~~~~d~~i~i~d~~~~~--~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~  249 (357)
T 3i2n_A          180 E-RVVCAGYDNGDIKLFDLRNMA--L-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT------QHPTKG  249 (357)
T ss_dssp             C-CEEEEEETTSEEEEEETTTTE--E-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE------EETTTE
T ss_pred             C-CEEEEEccCCeEEEEECccCc--e-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC------CCcccc
Confidence            7 799999999999999999877  3 334578999999999995  578999999999999999998      455555


Q ss_pred             ec-----cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC----CCCCCeeEEEecCCCCCcceEEe
Q 010997          368 FE-----GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT----TNYPAGLFFQHAGHRDKVVDFHW  438 (496)
Q Consensus       368 ~~-----~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~V~~~~~  438 (496)
                      +.     +|...|++++|+|++..+|++++.||.|++||++............    .......+..+.+|...|++++|
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~  329 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW  329 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence            44     8999999999999998668899999999999998743322111100    01122567788999999999999


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      +|++.+++++++.|       |.|+||++.+
T Consensus       330 s~~~~~l~~s~~~d-------~~i~iw~~~~  353 (357)
T 3i2n_A          330 SPDKRGLCVCSSFD-------QTVRVLIVTK  353 (357)
T ss_dssp             CSSSTTEEEEEETT-------SEEEEEEECC
T ss_pred             cCCCCeEEEEecCC-------CcEEEEECCC
Confidence            99999887766665       9999999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-35  Score=282.10  Aligned_cols=272  Identities=20%  Similarity=0.343  Sum_probs=224.8

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe--cCCCCcceeeeecCCCC
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEP  209 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~--~h~~~~v~~l~~~p~~~  209 (496)
                      ......+|.+.|++++|+| ++++|++++ ||.|++||+.+....         .....+.  +|.. .|.+++|+|+++
T Consensus        43 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~---------~~~~~~~~~~~~~-~v~~~~~~~~~~  110 (337)
T 1gxr_A           43 RQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNK---------SPVSQLDCLNRDN-YIRSCKLLPDGC  110 (337)
T ss_dssp             EEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCC---------SCSEEEECSCTTS-BEEEEEECTTSS
T ss_pred             ccceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCce---------eeeecccccCCCC-cEEEEEEcCCCC
Confidence            4556679999999999999 888999998 999999999876321         2333444  6766 799999999999


Q ss_pred             ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      +|++|+.||.|++||+.++..                                      .....+..|...|.+++|+|+
T Consensus       111 ~l~~~~~d~~i~~~d~~~~~~--------------------------------------~~~~~~~~~~~~i~~~~~~~~  152 (337)
T 1gxr_A          111 TLIVGGEASTLSIWDLAAPTP--------------------------------------RIKAELTSSAPACYALAISPD  152 (337)
T ss_dssp             EEEEEESSSEEEEEECCCC----------------------------------------EEEEEEECSSSCEEEEEECTT
T ss_pred             EEEEEcCCCcEEEEECCCCCc--------------------------------------ceeeecccCCCceEEEEECCC
Confidence            999999999999999975421                                      123567789999999999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      + .++++++.||.|++||+++++  ....+..|...|.+++|+| ++.+|++++.||.|++||+++      +..+..+.
T Consensus       153 ~-~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~  222 (337)
T 1gxr_A          153 S-KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE------GRQLQQHD  222 (337)
T ss_dssp             S-SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------TEEEEEEE
T ss_pred             C-CEEEEEeCCCcEEEEeCCCCc--eeeeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCC------CceEeeec
Confidence            8 789999999999999999876  5667778999999999999 899999999999999999998      56666664


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                       +...+.+++|+|++.. |++++.|+.|++||+...                ......+|...|.+++|+|++.+++ + 
T Consensus       223 -~~~~v~~~~~s~~~~~-l~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~-~-  282 (337)
T 1gxr_A          223 -FTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKP----------------DKYQLHLHESCVLSLKFAYCGKWFV-S-  282 (337)
T ss_dssp             -CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSS----------------CEEEECCCSSCEEEEEECTTSSEEE-E-
T ss_pred             -CCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCC----------------CeEEEcCCccceeEEEECCCCCEEE-E-
Confidence             7889999999999984 679999999999999874                1335678999999999999887654 4 


Q ss_pred             cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                            ++.||.|++|++..      ++.+ ....|...|.+++|+|
T Consensus       283 ------~~~dg~i~~~~~~~------~~~~-~~~~~~~~v~~~~~s~  316 (337)
T 1gxr_A          283 ------TGKDNLLNAWRTPY------GASI-FQSKESSSVLSCDISV  316 (337)
T ss_dssp             ------EETTSEEEEEETTT------CCEE-EEEECSSCEEEEEECT
T ss_pred             ------ecCCCcEEEEECCC------CeEE-EEecCCCcEEEEEECC
Confidence                  44459999999983      3333 2245788999999987

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.6e-36  Score=313.31  Aligned_cols=253  Identities=19%  Similarity=0.376  Sum_probs=208.5

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ...+|.+.|++++|+|+++++|+||+.||+|+|||+.......       ......+.+|.. .|.+++|+|++++|+||
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-------~~~~~~~~~h~~-~v~~v~~s~~g~~l~sg  448 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-------GVAQRRLTGHSH-FVEDVVLSSDGQFALSG  448 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-------CEEEEEEECCSS-CEEEEEECTTSSEEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-------ccccceecCCCC-cEEEEEECCCCCEEEEE
Confidence            4668999999999999778999999999999999998652111       133457889998 69999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.||+|+|||+.++..                                        ...+.+|...|.+++|+|++ .+|
T Consensus       449 s~Dg~v~vwd~~~~~~----------------------------------------~~~~~~h~~~v~~~~~s~~~-~~l  487 (694)
T 3dm0_A          449 SWDGELRLWDLAAGVS----------------------------------------TRRFVGHTKDVLSVAFSLDN-RQI  487 (694)
T ss_dssp             ETTSEEEEEETTTTEE----------------------------------------EEEEECCSSCEEEEEECTTS-SCE
T ss_pred             eCCCcEEEEECCCCcc----------------------------------------eeEEeCCCCCEEEEEEeCCC-CEE
Confidence            9999999999975432                                        36678999999999999998 789


Q ss_pred             EEEcCCCeEEEEEccCCCccc-eeeeccCCCCeEEEEecCCCC--cEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          295 CSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDD--NLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~i~~sp~~~--~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      ++|+.|++|++||+....... .....+|...|.+++|+| ++  .+|++|+.|++|++||+++      ......+.+|
T Consensus       488 ~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~------~~~~~~~~~h  560 (694)
T 3dm0_A          488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-NTLQPTIVSASWDKTVKVWNLSN------CKLRSTLAGH  560 (694)
T ss_dssp             EEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS-CSSSCEEEEEETTSCEEEEETTT------CCEEEEECCC
T ss_pred             EEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC-CCCcceEEEEeCCCeEEEEECCC------CcEEEEEcCC
Confidence            999999999999986543111 111246889999999999 54  6899999999999999998      7788899999


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      .+.|++++|+|++. +|++|+.||.|+|||+...               ..+..+. +...|.+++|+|++. ++++++ 
T Consensus       561 ~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~---------------~~~~~~~-~~~~v~~~~~sp~~~-~l~~~~-  621 (694)
T 3dm0_A          561 TGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEG---------------KKLYSLE-ANSVIHALCFSPNRY-WLCAAT-  621 (694)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSBCEEEETTTT---------------EEEECCB-CSSCEEEEEECSSSS-EEEEEE-
T ss_pred             CCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC---------------ceEEEec-CCCcEEEEEEcCCCc-EEEEEc-
Confidence            99999999999998 5789999999999999874               3344343 345799999999765 444333 


Q ss_pred             CCCCCCCCCeEEEeecCC
Q 010997          452 DCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~~  469 (496)
                             |+.|+|||+..
T Consensus       622 -------~~~i~iwd~~~  632 (694)
T 3dm0_A          622 -------EHGIKIWDLES  632 (694)
T ss_dssp             -------TTEEEEEETTT
T ss_pred             -------CCCEEEEECCC
Confidence                   36799999984

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.4e-36  Score=296.60  Aligned_cols=277  Identities=13%  Similarity=0.172  Sum_probs=224.2

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC----C---
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT----E---  208 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~----~---  208 (496)
                      ..+|.+.|++++|+|   ++||+|+.||.|+|||+.+.....      .......+.+|.. .|.+++|+|+    +   
T Consensus        12 ~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~------~~~~~~~~~~h~~-~v~~~~~~~~~~~~g~~~   81 (397)
T 1sq9_A           12 GKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN------PKDKSYSHFVHKS-GLHHVDVLQAIERDAFEL   81 (397)
T ss_dssp             SSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC------GGGGEEEEECCTT-CEEEEEEEEEEETTTEEE
T ss_pred             hhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccccc------CCCcceEEecCCC-cEEEEEEecccccCCccc
Confidence            357999999999988   699999999999999998873111      1235678889988 6999999999    9   


Q ss_pred             CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-----CCceeE
Q 010997          209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-----EDTVED  283 (496)
Q Consensus       209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~  283 (496)
                      ++|++|+.||.|++||+.+....                                   .......+..|     ...|.+
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~v~~  126 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDET-----------------------------------KKVIFEKLDLLDSDMKKHSFWA  126 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTT-----------------------------------CCEEEEEECCSCTTGGGSCEEE
T ss_pred             cEEEEEcCCCCEEEEEccCCccc-----------------------------------ccccceeecccccccCCCcEEE
Confidence            99999999999999999764320                                   00113556677     589999


Q ss_pred             EEEc----cCCCce-EEEEcCCCeEEEEEccC------CCccc---eeee-------ccCCCCeEEEEecCCCCcEEEEE
Q 010997          284 VTFC----PSSAQE-FCSVGDDSCLILWDARV------GTSPV---IKVE-------KAHDADLHCVDWNPLDDNLILTG  342 (496)
Q Consensus       284 l~~~----~~~~~~-l~s~~~dg~i~iwd~~~------~~~~~---~~~~-------~~~~~~v~~i~~sp~~~~~l~sg  342 (496)
                      ++|+    |++ .+ |++++.||.|++||++.      .....   ...+       ..|...|.+++|+| ++ +|++|
T Consensus       127 ~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~  203 (397)
T 1sq9_A          127 LKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATG  203 (397)
T ss_dssp             EEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEE
T ss_pred             EEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEE
Confidence            9999    988 67 99999999999999998      54211   0033       45889999999999 78 99999


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCCceEecc---C---CCCEEEEEEcCCCCCEEEEEeCC---CcEEEEECCCCCcccCCCC
Q 010997          343 SADNSVRMFDRRNLTSNGVGSPINKFEG---H---SAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKVEQGP  413 (496)
Q Consensus       343 s~dg~i~iwd~~~~~~~~~~~~~~~~~~---h---~~~i~~l~~sp~~~~llas~~~d---g~i~iwd~~~~~~~~~~~~  413 (496)
                      +.||.|++||+++      +.++..+..   |   ...|.+++|+|++. +|++++.|   +.|++||+...        
T Consensus       204 ~~dg~i~i~d~~~------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~--------  268 (397)
T 1sq9_A          204 FNNGTVQISELST------LRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFG--------  268 (397)
T ss_dssp             CTTSEEEEEETTT------TEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTC--------
T ss_pred             eCCCcEEEEECCC------CceeEEEeccccccccCCccceEEECCCCC-EEEEEecCCCCceEEEEECCCC--------
Confidence            9999999999998      788889988   9   99999999999998 46789889   99999999874        


Q ss_pred             CCCCCCCeeEEEecC-------------CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHH
Q 010997          414 RTTNYPAGLFFQHAG-------------HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA  480 (496)
Q Consensus       414 ~~~~~~~~~~~~~~~-------------h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~  480 (496)
                             ..+..+.+             |...|.+++|+|++.+++        +|+.||.|+|||+.      .++.+.
T Consensus       269 -------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--------~~~~dg~i~iwd~~------~~~~~~  327 (397)
T 1sq9_A          269 -------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC--------SAGWDGKLRFWDVK------TKERIT  327 (397)
T ss_dssp             -------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE--------EEETTSEEEEEETT------TTEEEE
T ss_pred             -------cccceeccCcccccccccccccCCcEEEEEECCCCCEEE--------EEeCCCeEEEEEcC------CCceeE
Confidence                   34555666             899999999999887655        44456999999998      566777


Q ss_pred             HHH------hc---------------cceEEEeccCC
Q 010997          481 ELE------KF---------------KAHVISCTSKP  496 (496)
Q Consensus       481 ~l~------~h---------------~~~v~~~~~sP  496 (496)
                      .+.      +|               ..+|.+++|+|
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~  364 (397)
T 1sq9_A          328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK  364 (397)
T ss_dssp             EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred             EEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence            777      77               99999999987

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-35  Score=284.48  Aligned_cols=283  Identities=14%  Similarity=0.242  Sum_probs=231.1

Q ss_pred             cccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC
Q 010997          129 PFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE  208 (496)
Q Consensus       129 ~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~  208 (496)
                      ...+...+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++            +....+.+|.. .|.+++|+|++
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~   86 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNG------------ERLGTLDGHTG-TIWSIDVDCFT   86 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTS
T ss_pred             cccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCc------------hhhhhhhhcCC-cEEEEEEcCCC
Confidence            3456678889999999999999 8899999999999999999887            66778889988 69999999999


Q ss_pred             CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      ++|++++.||.|++||+.++..                                        +..+. +...|.+++|+|
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~~----------------------------------------~~~~~-~~~~v~~~~~~~  125 (369)
T 3zwl_B           87 KYCVTGSADYSIKLWDVSNGQC----------------------------------------VATWK-SPVPVKRVEFSP  125 (369)
T ss_dssp             SEEEEEETTTEEEEEETTTCCE----------------------------------------EEEEE-CSSCEEEEEECT
T ss_pred             CEEEEEeCCCeEEEEECCCCcE----------------------------------------EEEee-cCCCeEEEEEcc
Confidence            9999999999999999975432                                        23344 788999999999


Q ss_pred             CCCceEEEEcCC-----CeEEEEEccCCCcc---------ceeeeccCCC--CeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997          289 SSAQEFCSVGDD-----SCLILWDARVGTSP---------VIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNSVRMFD  352 (496)
Q Consensus       289 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~---------~~~~~~~~~~--~v~~i~~sp~~~~~l~sgs~dg~i~iwd  352 (496)
                      ++ .+|++++.+     +.|++||++.....         .......|..  .+.+++|+| ++.+|++++.||.|++||
T Consensus       126 ~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d  203 (369)
T 3zwl_B          126 CG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYD  203 (369)
T ss_dssp             TS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEE
T ss_pred             CC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEE
Confidence            98 789999888     99999999876521         2223345555  999999999 899999999999999999


Q ss_pred             CCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCC
Q 010997          353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  432 (496)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  432 (496)
                      +++.     ...+..+..|...|.+++|+|++.. |++++.|+.|++||+...               ..+..+. +...
T Consensus       204 ~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~~---------------~~~~~~~-~~~~  261 (369)
T 3zwl_B          204 VSNN-----YEYVDSIDLHEKSISDMQFSPDLTY-FITSSRDTNSFLVDVSTL---------------QVLKKYE-TDCP  261 (369)
T ss_dssp             TTTT-----TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTC---------------CEEEEEE-CSSC
T ss_pred             CCCC-----cEeEEEEecCCCceeEEEECCCCCE-EEEecCCceEEEEECCCC---------------ceeeeec-CCCC
Confidence            9873     2567888899999999999999985 679999999999999874               2333333 6778


Q ss_pred             cceEEecCCCCcEEEEecCCCC------CCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          433 VVDFHWNASDPWTVVSVSDDCD------STGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       433 V~~~~~~p~~~~l~~s~s~d~~------sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +..++|+|++.++++++.++..      .......+++|++.      .++.+..+.+|...|.+++|+|
T Consensus       262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~------~~~~~~~~~~~~~~v~~~~~s~  325 (369)
T 3zwl_B          262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI------FEEEIGRVQGHFGPLNTVAISP  325 (369)
T ss_dssp             EEEEEECSSSSEEEEEECCC-------------CEEEEEETT------TCCEEEEEECCSSCEEEEEECT
T ss_pred             ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC------CCcchhheecccCcEEEEEECC
Confidence            9999999998877754433200      00111189999998      5677788899999999999997

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-35  Score=280.10  Aligned_cols=265  Identities=20%  Similarity=0.251  Sum_probs=224.5

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      ...+.+|.+.|++++| | ++.+||+|+.||.|++||+.+.            .....+..|.. .|.+++|+|++++|+
T Consensus        11 ~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~------------~~~~~~~~~~~-~v~~~~~~~~~~~l~   75 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQ------------WLGTVVYTGQG-FLNSVCYDSEKELLL   75 (313)
T ss_dssp             EEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSS------------EEEEEEEECSS-CEEEEEEETTTTEEE
T ss_pred             HHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCC------------EEEEEeecCCc-cEEEEEECCCCCEEE
Confidence            3456689999999999 7 7889999999999999999776            55667788877 799999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.||.|++|++....                                     .......+.+|...|.+++|.  + .
T Consensus        76 ~~~~dg~i~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~i~~~~~~--~-~  115 (313)
T 3odt_A           76 FGGKDTMINGVPLFATS-------------------------------------GEDPLYTLIGHQGNVCSLSFQ--D-G  115 (313)
T ss_dssp             EEETTSCEEEEETTCCT-------------------------------------TSCC-CEECCCSSCEEEEEEE--T-T
T ss_pred             EecCCCeEEEEEeeecC-------------------------------------CCCcccchhhcccCEEEEEec--C-C
Confidence            99999999999987431                                     223346678899999999993  4 6


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc-C
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-H  371 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~-h  371 (496)
                      ++++++.||.|++||  ...  ....+..|...+.+++|.|.++.+|++++.||.|++||..        ..+..+.. |
T Consensus       116 ~l~~~~~d~~i~~~d--~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~  183 (313)
T 3odt_A          116 VVISGSWDKTAKVWK--EGS--LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--------KVIKTFSGIH  183 (313)
T ss_dssp             EEEEEETTSEEEEEE--TTE--EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--------EEEEEECSSC
T ss_pred             EEEEEeCCCCEEEEc--CCc--EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--------ceEEEEeccC
Confidence            899999999999999  333  4566778999999999988788999999999999999933        56777776 9


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      ...|.+++|+|++.  |++++.||.|++||++..               ..+..+.+|...|++++|+|++ .+ ++   
T Consensus       184 ~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~---------------~~~~~~~~~~~~i~~~~~~~~~-~l-~~---  241 (313)
T 3odt_A          184 NDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTG---------------DVLRTYEGHESFVYCIKLLPNG-DI-VS---  241 (313)
T ss_dssp             SSCEEEEEEEETTE--EEEEETTSEEEEEETTTC---------------CEEEEEECCSSCEEEEEECTTS-CE-EE---
T ss_pred             cccEEEEEEcCCCe--EEEccCCCeEEEEECCch---------------hhhhhhhcCCceEEEEEEecCC-CE-EE---
Confidence            99999999999997  569999999999999874               4666778999999999999988 44 44   


Q ss_pred             CCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          452 DCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                          |+.||.|++||+.      .++.+..+..|..+|.+++|+|
T Consensus       242 ----~~~dg~v~iwd~~------~~~~~~~~~~~~~~i~~~~~~~  276 (313)
T 3odt_A          242 ----CGEDRTVRIWSKE------NGSLKQVITLPAISIWSVDCMS  276 (313)
T ss_dssp             ----EETTSEEEEECTT------TCCEEEEEECSSSCEEEEEECT
T ss_pred             ----EecCCEEEEEECC------CCceeEEEeccCceEEEEEEcc
Confidence                4445999999998      5677788889999999999987

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.5e-35  Score=286.80  Aligned_cols=251  Identities=19%  Similarity=0.377  Sum_probs=210.1

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .....+|.+.|++|+|+| ++++||+|+.||.|+|||+.++            +.+..+.+|.. .+.+++|  ++.+|+
T Consensus       140 ~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~------------~~~~~~~~h~~-~v~~~s~--~~~~l~  203 (420)
T 4gga_A          140 LLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSA-RVGSLSW--NSYILS  203 (420)
T ss_dssp             EEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEE--ETTEEE
T ss_pred             EEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCC------------cEEEEEeCCCC-ceEEEee--CCCEEE
Confidence            344457889999999999 8899999999999999999988            66778899987 5777777  567999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.|+.+++||.....                                       ..+..+.+|...+..+.|+|++ .
T Consensus       204 sgs~d~~i~~~d~~~~~---------------------------------------~~~~~~~~h~~~~~~~~~~~~g-~  243 (420)
T 4gga_A          204 SGSRSGHIHHHDVRVAE---------------------------------------HHVATLSGHSQEVCGLRWAPDG-R  243 (420)
T ss_dssp             EEETTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-S
T ss_pred             EEeCCCceeEeeecccc---------------------------------------eeeEEecccccceeeeeecCCC-C
Confidence            99999999999986432                                       2236778999999999999999 7


Q ss_pred             eEEEEcCCCeEEEEEccCCCc--cceeeeccCCCCeEEEEecCCCCcEEEE--EcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          293 EFCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILT--GSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~s--gs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      ++++++.|+.|++||...++.  ........|...|.+++|+|.+..++++  |+.|++|++||+++      +.++..+
T Consensus       244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t------~~~~~~~  317 (420)
T 4gga_A          244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------GACLSAV  317 (420)
T ss_dssp             EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT------TEEEEEE
T ss_pred             eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc------cccceee
Confidence            999999999999999987652  2344566899999999999977778776  45799999999998      7777777


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEE-eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSS-AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                      .. ...+.++.|+|++..+++++ +.|+.|+|||+.+.               .++..+.||.+.|++++|+|++.+++ 
T Consensus       318 ~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~---------------~~v~~l~gH~~~V~~l~~spdg~~l~-  380 (420)
T 4gga_A          318 DA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------------AKVAELKGHTSRVLSLTMSPDGATVA-  380 (420)
T ss_dssp             EC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCEE-
T ss_pred             cc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE-
Confidence            75 45789999999999766443 36999999999875               56778899999999999999988755 


Q ss_pred             EecCCCCCCCCCCeEEEeecCC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                             |||.|++|+|||+.+
T Consensus       381 -------S~s~D~tvriWdv~~  395 (420)
T 4gga_A          381 -------SAAADETLRLWRCFE  395 (420)
T ss_dssp             -------EEETTTEEEEECCSC
T ss_pred             -------EEecCCeEEEEECCC
Confidence                   555569999999974

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-34  Score=284.01  Aligned_cols=266  Identities=20%  Similarity=0.330  Sum_probs=209.3

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~  215 (496)
                      ...|.+.|++++|+| ++.+||+|+.||.|++||+.+.            +....+.+|.. .|.+++|  ++.+|++|+
T Consensus       130 ~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~-~v~~~~~--~~~~l~~~~  193 (401)
T 4aez_A          130 ETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQ------------TKLRTMAGHQA-RVGCLSW--NRHVLSSGS  193 (401)
T ss_dssp             ECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEE--ETTEEEEEE
T ss_pred             ecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCC------------eEEEEecCCCC-ceEEEEE--CCCEEEEEc
Confidence            345899999999999 8899999999999999999887            56678889988 6899999  467999999


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      .||.|++||++...                                       .....+.+|...|.+++|+|++ .+|+
T Consensus       194 ~dg~i~i~d~~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~~~~-~~l~  233 (401)
T 4aez_A          194 RSGAIHHHDVRIAN---------------------------------------HQIGTLQGHSSEVCGLAWRSDG-LQLA  233 (401)
T ss_dssp             TTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-SEEE
T ss_pred             CCCCEEEEecccCc---------------------------------------ceeeEEcCCCCCeeEEEEcCCC-CEEE
Confidence            99999999997321                                       2236778899999999999988 7999


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc--CCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--ADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      +|+.||.|++||+++..  ....+..|...|.+++|+|....++++|+  .|+.|++||+++      +.++..+. +..
T Consensus       234 s~~~d~~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~------~~~~~~~~-~~~  304 (401)
T 4aez_A          234 SGGNDNVVQIWDARSSI--PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT------GARVNTVD-AGS  304 (401)
T ss_dssp             EEETTSCEEEEETTCSS--EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT------CCEEEEEE-CSS
T ss_pred             EEeCCCeEEEccCCCCC--ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC------CCEEEEEe-CCC
Confidence            99999999999999877  56667789999999999995567888866  799999999998      67777776 678


Q ss_pred             CEEEEEEcCCCCCEEEE-EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          374 AVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      .|.+++|+|++..++++ |+.||.|++||+...             .......+.+|...|.+++|+|++.+++      
T Consensus       305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~------  365 (401)
T 4aez_A          305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-------------GLTKQVDIPAHDTRVLYSALSPDGRILS------  365 (401)
T ss_dssp             CEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-------------EEEEEEEEECCSSCCCEEEECTTSSEEE------
T ss_pred             cEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-------------cceeEEEecCCCCCEEEEEECCCCCEEE------
Confidence            89999999999965433 447999999999873             1134555779999999999999887655      


Q ss_pred             CCCCCCCCeEEEeecCCCCcCCchHHHHHH-HhccceEEEec
Q 010997          453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCT  493 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~  493 (496)
                        +++.||.|++|++.      .++.+... ..+..+..++.
T Consensus       366 --s~~~dg~i~iw~~~------~~~~~~~~~~~~~~~~~~i~  399 (401)
T 4aez_A          366 --TAASDENLKFWRVY------DGDHVKRPIPITKTPSSSIT  399 (401)
T ss_dssp             --EECTTSEEEEEECC------C-------------------
T ss_pred             --EEeCCCcEEEEECC------CCccccccccccCCCcccee
Confidence              55566999999998      45554443 23333444443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.2e-36  Score=288.78  Aligned_cols=255  Identities=13%  Similarity=0.157  Sum_probs=211.1

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      .|.++|++++|+| ++++||+|+.||.|+|||+.+..          .+....+.+|.. .|.+++|+|++++|++|+.|
T Consensus         6 ~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~----------~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d   73 (372)
T 1k8k_C            6 FLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNK----------WVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTD   73 (372)
T ss_dssp             SCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTE----------EEEEEEEECCSS-CEEEEEEETTTTEEEEEETT
T ss_pred             ccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCc----------EEeeeeecCCCC-cccEEEEeCCCCEEEEEcCC
Confidence            4899999999999 88999999999999999998761          125678889987 79999999999999999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      |.|++||+.++...                                      ....+..|...|.+++|+|++ .+|+++
T Consensus        74 g~i~vwd~~~~~~~--------------------------------------~~~~~~~~~~~v~~~~~~~~~-~~l~~~  114 (372)
T 1k8k_C           74 RNAYVWTLKGRTWK--------------------------------------PTLVILRINRAARCVRWAPNE-KKFAVG  114 (372)
T ss_dssp             SCEEEEEEETTEEE--------------------------------------EEEECCCCSSCEEEEEECTTS-SEEEEE
T ss_pred             CeEEEEECCCCeee--------------------------------------eeEEeecCCCceeEEEECCCC-CEEEEE
Confidence            99999999754311                                      113345688999999999998 799999


Q ss_pred             cCCCeEEEEEccCCCcc--ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC------------CCCCC
Q 010997          298 GDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS------------NGVGS  363 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~------------~~~~~  363 (496)
                      +.|+.|++||++.....  .......|...|.+++|+| ++.+|++|+.||.|++||++....            ...+.
T Consensus       115 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
T 1k8k_C          115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  193 (372)
T ss_dssp             ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence            99999999999987621  2233357899999999999 899999999999999999752110            00157


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  443 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~  443 (496)
                      .+..+..|...|.+++|+|++. +|++++.|+.|++||+...               ..+..+.+|...|.+++|+|++.
T Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~  257 (372)
T 1k8k_C          194 LMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLADADKK---------------MAVATLASETLPLLAVTFITESS  257 (372)
T ss_dssp             EEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGGGT---------------TEEEEEECSSCCEEEEEEEETTE
T ss_pred             heEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECCCC---------------ceeEEEccCCCCeEEEEEecCCC
Confidence            7888889999999999999998 5679999999999999874               45667788999999999999876


Q ss_pred             cEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          444 WTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       444 ~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      . ++++        .|+.|++|++..
T Consensus       258 ~-l~~~--------~d~~i~i~~~~~  274 (372)
T 1k8k_C          258 L-VAAG--------HDCFPVLFTYDS  274 (372)
T ss_dssp             E-EEEE--------TTSSCEEEEEET
T ss_pred             E-EEEE--------eCCeEEEEEccC
Confidence            4 4433        359999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.4e-35  Score=302.56  Aligned_cols=263  Identities=25%  Similarity=0.486  Sum_probs=227.7

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ....+|.+.|++++|+| ++.+|++++.|+.|++||...             +....+.+|.. .|++++|+|++++|++
T Consensus       256 ~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~-------------~~~~~~~~h~~-~v~~~~~~~~~~~l~t  320 (577)
T 2ymu_A          256 QTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNG-------------QLLQTLTGHSS-SVWGVAFSPDGQTIAS  320 (577)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS-------------CEEEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred             EEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCC-------------cEEEEEecCCC-CeEEEEECCCCCEEEE
Confidence            34568999999999999 888999999999999999643             34567889987 6999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      ++.||+|++||.....                                         +..+.+|...|.+++|+|++ .+
T Consensus       321 ~~~d~~i~~w~~~~~~-----------------------------------------~~~~~~~~~~v~~~~~s~~g-~~  358 (577)
T 2ymu_A          321 ASDDKTVKLWNRNGQH-----------------------------------------LQTLTGHSSSVWGVAFSPDG-QT  358 (577)
T ss_dssp             EETTSCEEEEETTSCE-----------------------------------------EEEECCCSSCEEEEEECTTS-SE
T ss_pred             EeCCCeEEEEeCCCCe-----------------------------------------eEEEeCCCCCEEEEEECCCC-CE
Confidence            9999999999976421                                         25567899999999999999 78


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      +++++.|+.|++||.. ++  ....+.+|...|.+++|+| ++.+|++++.|+.|++||..       +..+..+.+|..
T Consensus       359 l~~~~~dg~v~~~~~~-~~--~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~-------~~~~~~~~~~~~  427 (577)
T 2ymu_A          359 IASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSS  427 (577)
T ss_dssp             EEEEETTSEEEEEETT-CC--EEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT-------CCEEEEEECCSS
T ss_pred             EEEEeCCCEEEEEcCC-CC--EEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC-------CCEEEEecCCCC
Confidence            9999999999999953 33  5667778999999999999 99999999999999999964       578889999999


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  453 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~  453 (496)
                      .|++++|+|++. +|++++.|+.|++||+..                ..+..+.+|...|++++|+|++.++ +++    
T Consensus       428 ~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~~----------------~~~~~~~~~~~~v~~~~~spd~~~l-as~----  485 (577)
T 2ymu_A          428 SVWGVAFSPDDQ-TIASASDDKTVKLWNRNG----------------QLLQTLTGHSSSVRGVAFSPDGQTI-ASA----  485 (577)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSEEEEEETTS----------------CEEEEEECCSSCEEEEEECTTSCEE-EEE----
T ss_pred             CeEEEEECCCCC-EEEEEcCCCEEEEEECCC----------------CEEEEEcCCCCCEEEEEEcCCCCEE-EEE----
Confidence            999999999998 567999999999999754                4566788999999999999988765 444    


Q ss_pred             CCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          454 DSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       454 ~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                         +.|+.|+||+..       ++++.++.+|...|++++|+|
T Consensus       486 ---~~d~~i~iw~~~-------~~~~~~~~~h~~~v~~l~~s~  518 (577)
T 2ymu_A          486 ---SDDKTVKLWNRN-------GQLLQTLTGHSSSVRGVAFSP  518 (577)
T ss_dssp             ---ETTSEEEEEETT-------SCEEEEEECCSSCEEEEEECT
T ss_pred             ---eCCCEEEEEcCC-------CCEEEEEeCCCCCEEEEEEcC
Confidence               445999999965       566778899999999999998

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-35  Score=285.20  Aligned_cols=262  Identities=19%  Similarity=0.288  Sum_probs=213.6

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVL  212 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~  212 (496)
                      ...+|.+.|++++|+| ++++||+|+.||.|+|||+...          ..+....+.+|.. .|++++|+++  +++|+
T Consensus         6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~   73 (379)
T 3jrp_A            6 IANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILA   73 (379)
T ss_dssp             CEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSS-CEEEEEECCGGGCSEEE
T ss_pred             EecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCC----------cceeeeEecCCCC-cEEEEEeCCCCCCCEEE
Confidence            3468999999999999 8889999999999999999743          1145667889987 7999999987  89999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--C
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--S  290 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~  290 (496)
                      +|+.||.|++||+.++..                                      .....+..|...|.+++|+|+  +
T Consensus        74 s~~~dg~v~iwd~~~~~~--------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~  115 (379)
T 3jrp_A           74 SCSYDGKVLIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG  115 (379)
T ss_dssp             EEETTSCEEEEEEETTEE--------------------------------------EEEEEECCCSSCEEEEEECCGGGC
T ss_pred             EeccCCEEEEEEcCCCce--------------------------------------eEeeeecCCCcceEEEEeCCCCCC
Confidence            999999999999975421                                      123566779999999999998  6


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC------------CCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~------------~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                       .+|++++.|+.|++||++.........+..|...|.+++|+|.            ++.+|++|+.||.|++||++....
T Consensus       116 -~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  194 (379)
T 3jrp_A          116 -PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ  194 (379)
T ss_dssp             -SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred             -CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence             7999999999999999998864455566789999999999994            489999999999999999987221


Q ss_pred             CCCCCCceEeccCCCCEEEEEEcCC---CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcce
Q 010997          359 NGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  435 (496)
Q Consensus       359 ~~~~~~~~~~~~h~~~i~~l~~sp~---~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  435 (496)
                        ....+..+.+|...|.+++|+|+   +. +|++++.||.|+|||+......          ....+.....|...|.+
T Consensus       195 --~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----------~~~~~~~~~~~~~~v~~  261 (379)
T 3jrp_A          195 --TYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGP----------WKKTLLKEEKFPDVLWR  261 (379)
T ss_dssp             --EEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEETTSCEEEEEESSTTSC----------CEEEESSSSCCSSCEEE
T ss_pred             --ceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEeCCCEEEEEeCCCCCcc----------ceeeeeccccCCCcEEE
Confidence              01245678889999999999999   55 6789999999999999874211          01222333458889999


Q ss_pred             EEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ++|+|++.+++        +++.||.|+||++.
T Consensus       262 ~~~s~~g~~l~--------~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          262 ASWSLSGNVLA--------LSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEECSSSCCEE--------EEESSSSEEEEEEE
T ss_pred             EEEcCCCCEEE--------EecCCCcEEEEeCC
Confidence            99999988766        34446999999987

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=4.8e-36  Score=289.13  Aligned_cols=280  Identities=15%  Similarity=0.230  Sum_probs=218.4

Q ss_pred             ecCCCceeEEEecCC---CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC----CCcceeeeecCC--
Q 010997          137 IIHPGEVNRIRELPQ---NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMCPT--  207 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~---~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~----~~~v~~l~~~p~--  207 (496)
                      .+|.+.|++++|+|.   ....+++++.++.|+|||+.+.            .....+..|.    ...|++++|+|+  
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~   82 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ------------GEIRLLQSYVDADADENFYTCAWTYDSN   82 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG------------GCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC------------cEEEeeeeccccCCCCcEEEEEeccCCC
Confidence            379999999999983   3445555666679999999876            3334444332    236999999999  


Q ss_pred             --CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997          208 --EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  285 (496)
Q Consensus       208 --~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  285 (496)
                        +++|++|+.||.|++||+.++.                                        .+..+.+|...|.+++
T Consensus        83 ~~~~~l~~~~~dg~i~v~d~~~~~----------------------------------------~~~~~~~~~~~i~~~~  122 (366)
T 3k26_A           83 TSHPLLAVAGSRGIIRIINPITMQ----------------------------------------CIKHYVGHGNAINELK  122 (366)
T ss_dssp             TCCEEEEEEETTCEEEEECTTTCC----------------------------------------EEEEEESCCSCEEEEE
T ss_pred             CCCCEEEEecCCCEEEEEEchhce----------------------------------------EeeeecCCCCcEEEEE
Confidence              6689999999999999987532                                        2366788999999999


Q ss_pred             Ecc-CCCceEEEEcCCCeEEEEEccCCCccceeee---ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997          286 FCP-SSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  361 (496)
Q Consensus       286 ~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~  361 (496)
                      |+| ++ .+|++++.||.|++||+++++  ....+   ..|...|.+++|+| ++.+|++++.||.|++||+++      
T Consensus       123 ~~~~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~------  192 (366)
T 3k26_A          123 FHPRDP-NLLLSVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINS------  192 (366)
T ss_dssp             ECSSCT-TEEEEEETTSCEEEEETTTTE--EEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCS------
T ss_pred             ECCCCC-CEEEEEeCCCeEEEEEeecCe--EEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCC------
Confidence            999 55 899999999999999999876  44554   57999999999999 899999999999999999987      


Q ss_pred             CCCce----------------------------EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCC
Q 010997          362 GSPIN----------------------------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP  413 (496)
Q Consensus       362 ~~~~~----------------------------~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~  413 (496)
                      +..+.                            ....|...|.+++|+  +. +|++++.|+.|++||+...........
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~  269 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIK  269 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccc
Confidence            33332                            233499999999999  44 678999999999999987533222111


Q ss_pred             CCCCCCCeeEEEecCCCCCcceEEecCC--CCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHH----HHHhc--
Q 010997          414 RTTNYPAGLFFQHAGHRDKVVDFHWNAS--DPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA----ELEKF--  485 (496)
Q Consensus       414 ~~~~~~~~~~~~~~~h~~~V~~~~~~p~--~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~----~l~~h--  485 (496)
                      . .......+..+.+|...|++++|+|+  +.++ +       +|+.||.|++||+..      ++.+.    .+.+|  
T Consensus       270 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l-~-------~~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~  334 (366)
T 3k26_A          270 P-SESNVTILGRFDYSQCDIWYMRFSMDFWQKML-A-------LGNQVGKLYVWDLEV------EDPHKAKCTTLTHHKC  334 (366)
T ss_dssp             T-TCCCEEEEEEEECSSCCSSCCCCEECTTSSEE-E-------EECTTSCEEEEECCS------SSGGGCEEEEECCTTC
T ss_pred             c-CCcchheeccccccCCcEEEEEEcCCCCCcEE-E-------EEecCCcEEEEECCC------CCCccccceEEccccc
Confidence            1 11233567778899999999999998  6654 4       455569999999983      33333    66777  


Q ss_pred             cceEEEeccCC
Q 010997          486 KAHVISCTSKP  496 (496)
Q Consensus       486 ~~~v~~~~~sP  496 (496)
                      ..+|.+++|+|
T Consensus       335 ~~~v~~~~~s~  345 (366)
T 3k26_A          335 GAAIRQTSFSR  345 (366)
T ss_dssp             CSCEEEEEECT
T ss_pred             CCceEEEEeCC
Confidence            78999999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.4e-34  Score=282.50  Aligned_cols=296  Identities=13%  Similarity=0.148  Sum_probs=230.1

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      +..++.|.|          ..|+.|     +.+..+.||+......               ..+........+|.+.|++
T Consensus        18 ~i~~~~~~~----------~~l~s~-----~~dg~i~iw~~~~~~~---------------~~~~~~~~~~~~h~~~v~~   67 (397)
T 1sq9_A           18 DIFSVSACN----------SFTVSC-----SGDGYLKVWDNKLLDN---------------ENPKDKSYSHFVHKSGLHH   67 (397)
T ss_dssp             CEEEEEECS----------SEEEEE-----ETTSEEEEEESBCCTT---------------CCGGGGEEEEECCTTCEEE
T ss_pred             CeEEEEecC----------CeEEEE-----cCCCEEEEEECCCccc---------------ccCCCcceEEecCCCcEEE
Confidence            667788766          244333     3577899998653211               1112234566689999999


Q ss_pred             EEecCCC----C---cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC----CCcceeeeec----CCCCc
Q 010997          146 IRELPQN----T---KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMC----PTEPY  210 (496)
Q Consensus       146 l~~~p~~----~---~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~----~~~v~~l~~~----p~~~~  210 (496)
                      ++|+| +    +   .+|++++.||.|++||+.+.....       ......+.+|.    ...|.+++|+    |++++
T Consensus        68 ~~~~~-~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  139 (397)
T 1sq9_A           68 VDVLQ-AIERDAFELCLVATTSFSGDLLFYRITREDETK-------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH  139 (397)
T ss_dssp             EEEEE-EEETTTEEEEEEEEEETTSCEEEEEEEECTTTC-------CEEEEEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred             EEEec-ccccCCccccEEEEEcCCCCEEEEEccCCcccc-------cccceeecccccccCCCcEEEEEEeeccCCCCce
Confidence            99999 6    8   899999999999999998772100       01156778884    2379999999    99999


Q ss_pred             -eEEecCCCcEEEEecCC------ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee-------ec
Q 010997          211 -VLSGGKDKSVVLWSIQD------HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-------NG  276 (496)
Q Consensus       211 -l~sg~~Dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  276 (496)
                       |++|+.||.|++||+.+      .....                                   ..+...+       ..
T Consensus       140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~  184 (397)
T 1sq9_A          140 RLVATDVKGTTYIWKFHPFADESNSLTLN-----------------------------------WSPTLELQGTVESPMT  184 (397)
T ss_dssp             EEEEEETTSCEEEEEEESSSSHHHHTTTC-----------------------------------CCCEEEEEEEECCSSS
T ss_pred             EEEEEeCCCcEEEEeCCccccccccceee-----------------------------------ccCcceeeeeeccccC
Confidence             99999999999999986      32211                                   1111234       45


Q ss_pred             CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc---C---CCCeEEEEecCCCCcEEEEEcCC---Cc
Q 010997          277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---H---DADLHCVDWNPLDDNLILTGSAD---NS  347 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~---~~~v~~i~~sp~~~~~l~sgs~d---g~  347 (496)
                      |...|.+++|+|++  +|++++.||.|++||+++.+  ....+..   |   ...|.+++|+| ++.+|++++.|   |.
T Consensus       185 ~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~  259 (397)
T 1sq9_A          185 PSQFATSVDISERG--LIATGFNNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGC  259 (397)
T ss_dssp             SCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE--EEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEE
T ss_pred             CCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc--eeEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCce
Confidence            88999999999988  89999999999999999876  5666667   8   99999999999 89999999999   99


Q ss_pred             EEEEeCCCCCCCCCCCCceEecc-------------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCC
Q 010997          348 VRMFDRRNLTSNGVGSPINKFEG-------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  414 (496)
Q Consensus       348 i~iwd~~~~~~~~~~~~~~~~~~-------------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~  414 (496)
                      |++||+++      +.++..+..             |...|.+++|+|++.+ |++++.||.|+|||+...         
T Consensus       260 i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~---------  323 (397)
T 1sq9_A          260 ITLYETEF------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKTK---------  323 (397)
T ss_dssp             EEEEETTT------CCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTT---------
T ss_pred             EEEEECCC------CcccceeccCcccccccccccccCCcEEEEEECCCCCE-EEEEeCCCeEEEEEcCCC---------
Confidence            99999998      788889988             9999999999999984 679999999999999874         


Q ss_pred             CCCCCCeeEEEec------CC---------------CCCcceEEecCCCC---------cEEEEecCCCCCCCCCCeEEE
Q 010997          415 TTNYPAGLFFQHA------GH---------------RDKVVDFHWNASDP---------WTVVSVSDDCDSTGGGGTLQI  464 (496)
Q Consensus       415 ~~~~~~~~~~~~~------~h---------------~~~V~~~~~~p~~~---------~l~~s~s~d~~sgg~Dg~i~i  464 (496)
                            ..+..+.      +|               ...|++++|+|++.         .++++++.       ||.|+|
T Consensus       324 ------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~-------dg~i~i  390 (397)
T 1sq9_A          324 ------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL-------DRSIRW  390 (397)
T ss_dssp             ------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET-------TTEEEE
T ss_pred             ------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC-------CCcEEE
Confidence                  4455555      66               89999999999873         45665544       599999


Q ss_pred             eecC
Q 010997          465 WRMS  468 (496)
Q Consensus       465 w~~~  468 (496)
                      |++.
T Consensus       391 w~~~  394 (397)
T 1sq9_A          391 FREA  394 (397)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            9997

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.9e-35  Score=281.62  Aligned_cols=329  Identities=9%  Similarity=0.112  Sum_probs=219.5

Q ss_pred             hCcCCCCcceEeccCCcccCCCcceEEEEEEe-e--cCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEE
Q 010997           60 NHNLVWPSLSCRWGPQLEQATYKNRQRLYLSE-Q--TDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKT  136 (496)
Q Consensus        60 ~~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (496)
                      .+++..|.+++.|.|+         .+++.+. .  +..+.+|.|.+|++.........  .         ........+
T Consensus        10 ~~~~g~PV~sv~fs~d---------g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~--~---------~~~~~~~~l   69 (365)
T 4h5i_A           10 SYNVGYPAYGAKFLNN---------DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE--Q---------FHILSEFAL   69 (365)
T ss_dssp             EEECSSCEEEEEEEET---------TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH--H---------EEEEEEEEC
T ss_pred             ecCCCCCEEEEEEeCC---------CcEEEEECCCccccCCCCEEEEEEEcCCCcceee--e---------eeeeeEEEc
Confidence            3567789999999886         3444432 1  22246889999997643221100  0         001122344


Q ss_pred             ecCCCceeEEEecCCCCcEEEEE-----------eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec
Q 010997          137 IIHPGEVNRIRELPQNTKIVATH-----------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC  205 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~-----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~  205 (496)
                      .+|...|.++++.+   +.+++|           +.|+.+++|++............   ........+.. .+.+++|+
T Consensus        70 ~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~v~fS  142 (365)
T 4h5i_A           70 EDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS---VDFDASTNADD-YTKLVYIS  142 (365)
T ss_dssp             CTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE---ECSSCCCCTTC-CEEEEEEC
T ss_pred             cCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeee---eceeecCCccc-CEEEEEEc
Confidence            57888999998754   456655           45678999998765321110000   00001112222 47899999


Q ss_pred             CCCCceE--EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997          206 PTEPYVL--SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED  283 (496)
Q Consensus       206 p~~~~l~--sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  283 (496)
                      |||++|+  +++.|++|+|||+.++..                                        +..+ .|...|.+
T Consensus       143 pDg~~la~as~~~d~~i~iwd~~~~~~----------------------------------------~~~~-~~~~~V~~  181 (365)
T 4h5i_A          143 REGTVAAIASSKVPAIMRIIDPSDLTE----------------------------------------KFEI-ETRGEVKD  181 (365)
T ss_dssp             TTSSCEEEEESCSSCEEEEEETTTTEE----------------------------------------EEEE-ECSSCCCE
T ss_pred             CCCCEEEEEECCCCCEEEEeECCCCcE----------------------------------------EEEe-CCCCceEE
Confidence            9999876  455799999999976432                                        2333 47788999


Q ss_pred             EEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC----cEEEEeCCCCCCC
Q 010997          284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN----SVRMFDRRNLTSN  359 (496)
Q Consensus       284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg----~i~iwd~~~~~~~  359 (496)
                      |+|+|++ .++++++.+ .+++|+..++..........|...|.+++|+| ++.++++++.|+    .+++||+......
T Consensus       182 v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~  258 (365)
T 4h5i_A          182 LHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS  258 (365)
T ss_dssp             EEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE
T ss_pred             EEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec
Confidence            9999999 788888855 56677777766333344567889999999999 999999999887    6888998762100


Q ss_pred             CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-ecCCCCCcceEEe
Q 010997          360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDKVVDFHW  438 (496)
Q Consensus       360 ~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~~  438 (496)
                        ......+.+|...|++++|+|+|. +||+|+.|+.|+|||+.+.               .++.. +.+|...|++++|
T Consensus       259 --~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~---------------~~~~~~~~gH~~~V~~v~f  320 (365)
T 4h5i_A          259 --VLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDL---------------SMSKIFKQAHSFAITEVTI  320 (365)
T ss_dssp             --EEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTT---------------EEEEEETTSSSSCEEEEEE
T ss_pred             --ceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCC---------------cEEEEecCcccCCEEEEEE
Confidence              112456778999999999999998 5789999999999999874               44554 5799999999999


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC--CchHHHHHHHhc
Q 010997          439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR--PQDEVLAELEKF  485 (496)
Q Consensus       439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~--~~~~~~~~l~~h  485 (496)
                      +|++.+| ||       ||.|++|+||++......  .-.+.+.+|+.|
T Consensus       321 Spdg~~l-aS-------~S~D~tvrvw~ip~~~~~~~s~~~~l~kl~~~  361 (365)
T 4h5i_A          321 SPDSTYV-AS-------VSAANTIHIIKLPLNYANYTSMKQKISKLEHH  361 (365)
T ss_dssp             CTTSCEE-EE-------EETTSEEEEEECCTTTTC--------------
T ss_pred             CCCCCEE-EE-------EeCCCeEEEEEcCCCCcCccCccccceeeecc
Confidence            9988765 54       445599999999754222  223445555544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.6e-35  Score=305.24  Aligned_cols=265  Identities=17%  Similarity=0.281  Sum_probs=203.1

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .....+|.+.|++++|+| ++++|++|+.||+|+|||+.++            .....+.+|.. .|.+++|+|++++|+
T Consensus       423 ~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~l~  488 (694)
T 3dm0_A          423 QRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAG------------VSTRRFVGHTK-DVLSVAFSLDNRQIV  488 (694)
T ss_dssp             EEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEECTTSSCEE
T ss_pred             cceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCC------------cceeEEeCCCC-CEEEEEEeCCCCEEE
Confidence            345678999999999999 8899999999999999999887            56678899998 699999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC-
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-  291 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-  291 (496)
                      ||+.|++|++||........                                     ......+|...|.+++|+|++. 
T Consensus       489 s~s~D~~i~iwd~~~~~~~~-------------------------------------~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          489 SASRDRTIKLWNTLGECKYT-------------------------------------ISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             EEETTSCEEEECTTSCEEEE-------------------------------------ECSSTTSCSSCEEEEEECSCSSS
T ss_pred             EEeCCCEEEEEECCCCccee-------------------------------------eccCCCCCCCcEEEEEEeCCCCc
Confidence            99999999999975321100                                     0011246888999999999862 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      ..|++++.|++|++||++..+  ....+.+|...|++++|+| ++.+|++|+.||.|++||+++      +..+..+. +
T Consensus       532 ~~l~s~s~d~~v~vwd~~~~~--~~~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~------~~~~~~~~-~  601 (694)
T 3dm0_A          532 PTIVSASWDKTVKVWNLSNCK--LRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAE------GKKLYSLE-A  601 (694)
T ss_dssp             CEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTT------TEEEECCB-C
T ss_pred             ceEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC------CceEEEec-C
Confidence            479999999999999999877  6677889999999999999 999999999999999999998      67777766 4


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCC----CCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN----YPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                      ...|.+++|+|++. ++++++ |+.|+|||+...............    ...........+...+++++|+|++.+|+ 
T Consensus       602 ~~~v~~~~~sp~~~-~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~-  678 (694)
T 3dm0_A          602 NSVIHALCFSPNRY-WLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF-  678 (694)
T ss_dssp             SSCEEEEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE-
T ss_pred             CCcEEEEEEcCCCc-EEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE-
Confidence            56799999999987 555554 677999999874221110000000    00000000112223478999999888765 


Q ss_pred             EecCCCCCCCCCCeEEEeecC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                             ||+.||+|+||++.
T Consensus       679 -------sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          679 -------SGYTDGVIRVWGIG  692 (694)
T ss_dssp             -------EEETTSEEEEEEC-
T ss_pred             -------EEcCCCeEEEEecc
Confidence                   55556999999986

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=5.1e-35  Score=279.51  Aligned_cols=280  Identities=17%  Similarity=0.294  Sum_probs=215.9

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEE
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLS  213 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~s  213 (496)
                      ..+|.+.|++++|+| ++++||+|+.||.|+|||+.+....        .+....+.+|.. .|++++|+|  ++.+|++
T Consensus         7 ~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~--------~~~~~~~~~~~~-~v~~~~~~~~~d~~~l~s   76 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSN--------WELSDSWRAHDS-SIVAIDWASPEYGRIIAS   76 (351)
T ss_dssp             ECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCC--------EEEEEEEECCSS-CEEEEEECCGGGCSEEEE
T ss_pred             CcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCc--------ceecceeccCCC-cEEEEEEcCCCCCCEEEE
Confidence            358999999999999 8899999999999999999875211        134567788988 799999999  5899999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--CC
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SA  291 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~  291 (496)
                      |+.||.|++||++++.....                               ......+..+..|...|.+++|+|+  + 
T Consensus        77 ~~~dg~v~vwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  124 (351)
T 3f3f_A           77 ASYDKTVKLWEEDPDQEECS-------------------------------GRRWNKLCTLNDSKGSLYSVKFAPAHLG-  124 (351)
T ss_dssp             EETTSCEEEEEECTTSCTTS-------------------------------SCSEEEEEEECCCSSCEEEEEECCGGGC-
T ss_pred             EcCCCeEEEEecCCCccccc-------------------------------ccCcceeeeecccCCceeEEEEcCCCCC-
Confidence            99999999999986432110                               0122345677889999999999998  7 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCcccee-----------eeccCCCCeEEEEecCC--CCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIK-----------VEKAHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~-----------~~~~~~~~v~~i~~sp~--~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      .+|++++.||.|++||++++......           ....|...+.+++|+|.  ++.+|++++.|+.+.+|+..... 
T Consensus       125 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-  203 (351)
T 3f3f_A          125 LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-  203 (351)
T ss_dssp             SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-
T ss_pred             cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-
Confidence            78999999999999999887632111           11257889999999993  38999999999999888877621 


Q ss_pred             CCCCCCceEeccCCCCEEEEEEcCCCC---CEEEEEeCCCcEEEEECCCCCcccCCCCC---------------------
Q 010997          359 NGVGSPINKFEGHSAAVLCVQWSPDKS---SVFGSSAEDGLLNIWDYEKVGKKVEQGPR---------------------  414 (496)
Q Consensus       359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~---~llas~~~dg~i~iwd~~~~~~~~~~~~~---------------------  414 (496)
                         ...+..+.+|...|++++|+|++.   .+|++++.||.|++||++...........                     
T Consensus       204 ---~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (351)
T 3f3f_A          204 ---LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS  280 (351)
T ss_dssp             ---EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred             ---eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence               223778889999999999999983   36789999999999999874221111000                     


Q ss_pred             ----------CCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          415 ----------TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       415 ----------~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                                ........+..+.+|...|++++|+|++.+++        +|+.||.|+||++..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~--------s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS--------SAGDDGKVRLWKATY  337 (351)
T ss_dssp             ----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE--------EEETTSCEEEEEECT
T ss_pred             ccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE--------EecCCCcEEEEecCc
Confidence                      00012256777889999999999999887655        455569999999983

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-35  Score=285.04  Aligned_cols=301  Identities=16%  Similarity=0.265  Sum_probs=225.3

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      |..++.|.|.-..    ....++.+.     .++.+.||+......       +         ..+.......|.+.|++
T Consensus        20 ~v~~i~~~p~~~~----~~~~~~~~~-----~~~~v~vw~~~~~~~-------~---------~~~~~~~~~~~~~~v~~   74 (366)
T 3k26_A           20 PLFGVQFNWHSKE----GDPLVFATV-----GSNRVTLYECHSQGE-------I---------RLLQSYVDADADENFYT   74 (366)
T ss_dssp             CEEEEEECTTCCT----TSCEEEEEE-----ETTEEEEEEECGGGC-------E---------EEEEEEECSCTTCCEEE
T ss_pred             ceEEEEEecccCC----CCceEEEEC-----CCCEEEEEEcCCCcE-------E---------EeeeeccccCCCCcEEE
Confidence            6678888875111    112343332     233788998653111       0         01112222348899999


Q ss_pred             EEecCCC---CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC-CCCceEEecCCCcEE
Q 010997          146 IRELPQN---TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVV  221 (496)
Q Consensus       146 l~~~p~~---~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~sg~~Dg~i~  221 (496)
                      ++|+|..   +.+|++|+.||.|++||+.+.            +....+.+|.. .|.+++|+| ++.+|++|+.||.|+
T Consensus        75 ~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------~~~~~~~~~~~-~i~~~~~~~~~~~~l~s~~~dg~i~  141 (366)
T 3k26_A           75 CAWTYDSNTSHPLLAVAGSRGIIRIINPITM------------QCIKHYVGHGN-AINELKFHPRDPNLLLSVSKDHALR  141 (366)
T ss_dssp             EEEEECTTTCCEEEEEEETTCEEEEECTTTC------------CEEEEEESCCS-CEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             EEeccCCCCCCCEEEEecCCCEEEEEEchhc------------eEeeeecCCCC-cEEEEEECCCCCCEEEEEeCCCeEE
Confidence            9999932   679999999999999999887            66778889987 799999999 899999999999999


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee---ecCCCceeEEEEccCCCceEEEEc
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY---NGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      +||++++..                                        +..+   .+|...|.+++|+|++ .+|++++
T Consensus       142 iwd~~~~~~----------------------------------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~  180 (366)
T 3k26_A          142 LWNIQTDTL----------------------------------------VAIFGGVEGHRDEVLSADYDLLG-EKIMSCG  180 (366)
T ss_dssp             EEETTTTEE----------------------------------------EEEECSTTSCSSCEEEEEECTTS-SEEEEEE
T ss_pred             EEEeecCeE----------------------------------------EEEecccccccCceeEEEECCCC-CEEEEec
Confidence            999975432                                        1333   5789999999999998 7899999


Q ss_pred             CCCeEEEEEccCCCcc--------------------------ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997          299 DDSCLILWDARVGTSP--------------------------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  352 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~--------------------------~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd  352 (496)
                      .||.|++||+++++..                          .......|...|.+++|+   +.+|++++.||.|++||
T Consensus       181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd  257 (366)
T 3k26_A          181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWK  257 (366)
T ss_dssp             TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEE
T ss_pred             CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEe
Confidence            9999999999875411                          111223399999999998   56999999999999999


Q ss_pred             CCCCCCC--------CCCCCceEeccCCCCEEEEEEcCC--CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCee
Q 010997          353 RRNLTSN--------GVGSPINKFEGHSAAVLCVQWSPD--KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  422 (496)
Q Consensus       353 ~~~~~~~--------~~~~~~~~~~~h~~~i~~l~~sp~--~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  422 (496)
                      +++....        .....+..+..|...|.+++|+|+  +. +|++|+.||.|++||+......           ...
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~~~~dg~i~vwd~~~~~~~-----------~~~  325 (366)
T 3k26_A          258 PGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLALGNQVGKLYVWDLEVEDPH-----------KAK  325 (366)
T ss_dssp             ESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEEECTTSCEEEEECCSSSGG-----------GCE
T ss_pred             CCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEEEecCCcEEEEECCCCCCc-----------ccc
Confidence            9874310        001337778889999999999999  87 5789999999999999874211           124


Q ss_pred             EEEecCC--CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          423 FFQHAGH--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       423 ~~~~~~h--~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ...+.+|  ...|++++|+|++.+++        +|+.||.|+|||+.
T Consensus       326 ~~~~~~~~~~~~v~~~~~s~~~~~l~--------s~~~dg~i~iwd~~  365 (366)
T 3k26_A          326 CTTLTHHKCGAAIRQTSFSRDSSILI--------AVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSEEE--------EEETTSEEEEEEC-
T ss_pred             ceEEcccccCCceEEEEeCCCCCeEE--------EEeCCCEEEEEEec
Confidence            4556676  78999999999887655        44455999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-34  Score=281.57  Aligned_cols=285  Identities=17%  Similarity=0.224  Sum_probs=217.0

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE--ecCCCCcceeeeecC-CCC
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCP-TEP  209 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l--~~h~~~~v~~l~~~p-~~~  209 (496)
                      .....+|.+.|++++|+|++.++||+|+.||.|+|||+.+.            .....+  .+|.. .|.+++|+| +++
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~h~~-~v~~~~~~~~~~~  132 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ------------NKTSFIQGMGPGD-AITGMKFNQFNTN  132 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST------------TCEEEECCCSTTC-BEEEEEEETTEEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc------------ccceeeecCCcCC-ceeEEEeCCCCCC
Confidence            33556899999999999943389999999999999999877            333344  36877 799999999 678


Q ss_pred             ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      +|++|+.|+.|++||+.+...                                      ........|...|.+++|+|+
T Consensus       133 ~l~s~~~d~~i~iwd~~~~~~--------------------------------------~~~~~~~~~~~~v~~~~~~~~  174 (383)
T 3ei3_B          133 QLFVSSIRGATTLRDFSGSVI--------------------------------------QVFAKTDSWDYWYCCVDVSVS  174 (383)
T ss_dssp             EEEEEETTTEEEEEETTSCEE--------------------------------------EEEECCCCSSCCEEEEEEETT
T ss_pred             EEEEEeCCCEEEEEECCCCce--------------------------------------EEEeccCCCCCCeEEEEECCC
Confidence            999999999999999974211                                      001112345588999999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      + .+|++++.|+.|++||++ +.  ....+..|...|.+++|+| ++. +|++|+.|+.|++||+++....  ...+..+
T Consensus       175 ~-~~l~~~~~d~~i~i~d~~-~~--~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~  247 (383)
T 3ei3_B          175 R-QMLATGDSTGRLLLLGLD-GH--EIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDK--NSYIAEM  247 (383)
T ss_dssp             T-TEEEEEETTSEEEEEETT-SC--EEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCST--TCEEEEE
T ss_pred             C-CEEEEECCCCCEEEEECC-CC--EEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcc--cceEEEe
Confidence            8 799999999999999994 33  4667778999999999999 676 9999999999999999973311  2344445


Q ss_pred             ccCCCCEEEEEEcC-CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE----ecCCCCCcceEEecCCCC
Q 010997          369 EGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ----HAGHRDKVVDFHWNASDP  443 (496)
Q Consensus       369 ~~h~~~i~~l~~sp-~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~V~~~~~~p~~~  443 (496)
                       +|...|.+++|+| ++. +|++++.|+.|++||++.....            ..+..    ...|...+. +.|+|++.
T Consensus       248 -~~~~~v~~~~~s~~~~~-~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~p~~~  312 (383)
T 3ei3_B          248 -PHEKPVNAAYFNPTDST-KLLTTDQRNEIRVYSSYDWSKP------------DQIIIHPHRQFQHLTPIK-ATWHPMYD  312 (383)
T ss_dssp             -ECSSCEEEEEECTTTSC-EEEEEESSSEEEEEETTBTTSC------------SEEEECCBCCCTTSCCCC-CEECSSSS
T ss_pred             -cCCCceEEEEEcCCCCC-EEEEEcCCCcEEEEECCCCccc------------cccccccccccccccceE-EeccCCCC
Confidence             6999999999999 888 5679999999999999875221            11111    123455555 47777666


Q ss_pred             cEEEEecCCC-CCCCCCCeEEEeecCCCCcCCchHHHHHHHh--ccceEEEeccCC
Q 010997          444 WTVVSVSDDC-DSTGGGGTLQIWRMSDLIYRPQDEVLAELEK--FKAHVISCTSKP  496 (496)
Q Consensus       444 ~l~~s~s~d~-~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~--h~~~v~~~~~sP  496 (496)
                      .++++.+.|. .+|+.||.|+|||+.      +++.+.++.+  |...+..++|+|
T Consensus       313 ~~~~~~s~dg~~s~s~d~~i~iwd~~------~~~~~~~l~~~~~~~~~~~~~~s~  362 (383)
T 3ei3_B          313 LIVAGRYPDDQLLLNDKRTIDIYDAN------SGGLVHQLRDPNAAGIISLNKFSP  362 (383)
T ss_dssp             EEEEECBCCTTTCTTCCCCEEEEETT------TCCEEEEECBTTBCSCCCEEEECT
T ss_pred             ceEEEecCCcccccCCCCeEEEEecC------CCceeeeecCCCCCceEEEEEEec
Confidence            6555443321 156678999999998      5666777776  456677779987

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.5e-35  Score=283.24  Aligned_cols=284  Identities=14%  Similarity=0.230  Sum_probs=218.9

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeC---CCcEEEEeCCCCCCccccCCCCCCCCceE-EecCCCCcceeeeecCC-
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTD---SPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPT-  207 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-l~~h~~~~v~~l~~~p~-  207 (496)
                      .....+|.+.|++++|+|++..++++|+.   ||.|+|||+.++            +.... ..+|.. .|.+++|+|+ 
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~------------~~~~~~~~~~~~-~v~~~~~~~~~   77 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG------------DLKLLREIEKAK-PIKCGTFGATS   77 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS------------SEEEEEEEEESS-CEEEEECTTCC
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC------------cccceeeecccC-cEEEEEEcCCC
Confidence            34446799999999999955567778877   999999999876            22222 336766 7999999998 


Q ss_pred             --CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997          208 --EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  285 (496)
Q Consensus       208 --~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  285 (496)
                        +.+|++|+.||.|++||+.++.                                       .++..+.+|...|.++.
T Consensus        78 ~~~~~l~~~~~dg~i~iwd~~~~~---------------------------------------~~~~~~~~~~~~v~~~~  118 (357)
T 3i2n_A           78 LQQRYLATGDFGGNLHIWNLEAPE---------------------------------------MPVYSVKGHKEIINAID  118 (357)
T ss_dssp             TTTCCEEEEETTSCEEEECTTSCS---------------------------------------SCSEEECCCSSCEEEEE
T ss_pred             CCCceEEEecCCCeEEEEeCCCCC---------------------------------------ccEEEEEecccceEEEe
Confidence              6999999999999999997542                                       12366788999999996


Q ss_pred             E------ccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCC----CeEEEE----ecCCCCcEEEEEcCCCcEEEE
Q 010997          286 F------CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA----DLHCVD----WNPLDDNLILTGSADNSVRMF  351 (496)
Q Consensus       286 ~------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~~i~----~sp~~~~~l~sgs~dg~i~iw  351 (496)
                      |      +|++ .+|++++.||.|++||++.+..+ ...+..|..    .+.+++    |+| ++.+|++|+.||.|++|
T Consensus       119 ~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~  195 (357)
T 3i2n_A          119 GIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLF  195 (357)
T ss_dssp             EESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEE
T ss_pred             eccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCc-ceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEE
Confidence            5      5677 78999999999999999987632 334434443    899998    788 89999999999999999


Q ss_pred             eCCCCCCCCCCCCceEeccCCCCEEEEEEcC---CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC
Q 010997          352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSP---DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  428 (496)
Q Consensus       352 d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp---~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (496)
                      |+++      +.. .....|...|.+++|+|   ++. .|++++.||.|++||++......          ........+
T Consensus       196 d~~~------~~~-~~~~~~~~~v~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~  257 (357)
T 3i2n_A          196 DLRN------MAL-RWETNIKNGVCSLEFDRKDISMN-KLVATSLEGKFHVFDMRTQHPTK----------GFASVSEKA  257 (357)
T ss_dssp             ETTT------TEE-EEEEECSSCEEEEEESCSSSSCC-EEEEEESTTEEEEEEEEEEETTT----------EEEEEEEEC
T ss_pred             ECcc------Cce-eeecCCCCceEEEEcCCCCCCCC-EEEEECCCCeEEEEeCcCCCccc----------ceeeeccCC
Confidence            9998      444 44567899999999999   777 46799999999999998741110          011224558


Q ss_pred             CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC-------------chHHHHHHHhccceEEEeccC
Q 010997          429 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP-------------QDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       429 h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~-------------~~~~~~~l~~h~~~v~~~~~s  495 (496)
                      |...|++++|+|++..++++++.       ||.|++|++.......             ..+.+..+.+|..+|.+++|+
T Consensus       258 ~~~~v~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s  330 (357)
T 3i2n_A          258 HKSTVWQVRHLPQNRELFLTAGG-------AGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS  330 (357)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEET-------TSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred             CcCCEEEEEECCCCCcEEEEEeC-------CCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence            99999999999998866775555       4999999997432110             114566788899999999999


Q ss_pred             C
Q 010997          496 P  496 (496)
Q Consensus       496 P  496 (496)
                      |
T Consensus       331 ~  331 (357)
T 3i2n_A          331 P  331 (357)
T ss_dssp             S
T ss_pred             C
Confidence            7

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=294.41  Aligned_cols=286  Identities=15%  Similarity=0.232  Sum_probs=200.5

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC------------CCcceeeee
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------------DNAEFALAM  204 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~~v~~l~~  204 (496)
                      +.|.+.|++++|+| ++++||+|+.||.|+|||+.+...... ......+....+.+|.            . .|++++|
T Consensus        25 ~~~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~V~~l~~  101 (447)
T 3dw8_B           25 VAEADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQS-HSRGEYNVYSTFQSHEPEFDYLKSLEIEE-KINKIRW  101 (447)
T ss_dssp             CCGGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----C-CCCCCEEEEEEEECCCCEEEGGGTEEECC-CCCEEEE
T ss_pred             ccccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCc-ccccceeEecccccccccccccccccccC-ceEEEEE
Confidence            45788999999999 899999999999999999987631110 0001123466888997            5 6999999


Q ss_pred             cCCC--CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC---------cCCeee
Q 010997          205 CPTE--PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS---------VGPRGI  273 (496)
Q Consensus       205 ~p~~--~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  273 (496)
                      +|++  .+|++|+.||+|++||+.+..........  ....+..   .     ....+.......         ..+...
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~--~~~~g~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNL--KEEDGRY---R-----DPTTVTTLRVPVFRPMDLMVEASPRRI  171 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSC--C----------------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecc--cCccccc---c-----CcccccceEeccccchheeeeccceEE
Confidence            9998  78999999999999999864331100000  0000000   0     000000000000         011122


Q ss_pred             -eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcccee-------eeccCCCCeEEEEecCCCC-cEEEEEcC
Q 010997          274 -YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK-------VEKAHDADLHCVDWNPLDD-NLILTGSA  344 (496)
Q Consensus       274 -~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~i~~sp~~~-~~l~sgs~  344 (496)
                       ..+|...|.+++|+|++ .+|++| .|+.|++||++.... ...       .+..|...|++++|+| ++ .+|++|+.
T Consensus       172 ~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~  247 (447)
T 3dw8_B          172 FANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSS  247 (447)
T ss_dssp             ECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEET
T ss_pred             eccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECC-CCCcEEEEEeC
Confidence             36799999999999998 788888 799999999985431 222       2568999999999999 76 99999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCC----ceEeccCCC------------CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997          345 DNSVRMFDRRNLTSNGVGSP----INKFEGHSA------------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  408 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~----~~~~~~h~~------------~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~  408 (496)
                      ||.|++||+++      +..    +..+..|..            .|.+++|+|++.+ |++++. +.|+|||++..+  
T Consensus       248 dg~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~--  317 (447)
T 3dw8_B          248 KGTIRLCDMRA------SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMEN--  317 (447)
T ss_dssp             TSCEEEEETTT------CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCS--
T ss_pred             CCeEEEEECcC------CccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCc--
Confidence            99999999998      444    678888876            9999999999985 668887 999999998632  


Q ss_pred             cCCCCCCCCCCCeeEEEecCCCCC---------------cceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          409 VEQGPRTTNYPAGLFFQHAGHRDK---------------VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~h~~~---------------V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                                  ..+..+.+|...               +..++|+|++.+++        +|+.||.|+|||+..
T Consensus       318 ------------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~--------s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          318 ------------RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVM--------TGSYNNFFRMFDRNT  373 (447)
T ss_dssp             ------------SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEE--------EECSTTEEEEEETTT
T ss_pred             ------------cccceeeccccccccccccccccccccceEEEECCCCCEEE--------EeccCCEEEEEEcCC
Confidence                        223334555432               23499999988764        555569999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.7e-35  Score=314.58  Aligned_cols=271  Identities=21%  Similarity=0.292  Sum_probs=234.4

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ....+|.+.|.+++|+| ++.+||+|+.||.|+|||+.++            .....+.+|.. .|.+++|+|++++|++
T Consensus         7 ~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~~   72 (814)
T 3mkq_A            7 KTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQ------------VEVRSIQVTET-PVRAGKFIARKNWIIV   72 (814)
T ss_dssp             EEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEEEEEEGGGTEEEE
T ss_pred             eeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCC------------ceEEEEecCCC-cEEEEEEeCCCCEEEE
Confidence            45578999999999999 8899999999999999999887            56678889987 7999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.||.|++||+.++.                                        .+..+.+|.+.|.+++|+|++ .+
T Consensus        73 ~~~dg~i~vw~~~~~~----------------------------------------~~~~~~~~~~~v~~~~~s~~~-~~  111 (814)
T 3mkq_A           73 GSDDFRIRVFNYNTGE----------------------------------------KVVDFEAHPDYIRSIAVHPTK-PY  111 (814)
T ss_dssp             EETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEEECSSS-SE
T ss_pred             EeCCCeEEEEECCCCc----------------------------------------EEEEEecCCCCEEEEEEeCCC-CE
Confidence            9999999999997543                                        236678899999999999999 68


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC-
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-  372 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-  372 (496)
                      |++++.||.|++||++++.. ....+..|...|.+++|+|.++.+|++++.||.|++||++.      +.....+..+. 
T Consensus       112 l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~  184 (814)
T 3mkq_A          112 VLSGSDDLTVKLWNWENNWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------STPNFTLTTGQE  184 (814)
T ss_dssp             EEEEETTSEEEEEEGGGTSE-EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC------SSCSEEEECCCT
T ss_pred             EEEEcCCCEEEEEECCCCce-EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CcceeEEecCCC
Confidence            99999999999999988642 45667789999999999996678999999999999999987      56666666554 


Q ss_pred             CCEEEEEEcC--CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          373 AAVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       373 ~~i~~l~~sp--~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      ..|.+++|+|  ++. +|++++.||.|++||+...               ..+..+.+|...|.+++|+|++..++    
T Consensus       185 ~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~----  244 (814)
T 3mkq_A          185 RGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQTK---------------SCVATLEGHMSNVSFAVFHPTLPIII----  244 (814)
T ss_dssp             TCCCEEEECCSTTCC-EEEEECTTSEEEEEETTTT---------------EEEEEEECCSSCEEEEEECSSSSEEE----
T ss_pred             CCEEEEEEEECCCCC-EEEEEeCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE----
Confidence            8899999999  887 5679999999999999874               45667788999999999999887554    


Q ss_pred             CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                          +|+.||.|++|++.      +++.+..+..|...|.+++|+|
T Consensus       245 ----~~~~dg~v~vwd~~------~~~~~~~~~~~~~~v~~~~~~~  280 (814)
T 3mkq_A          245 ----SGSEDGTLKIWNSS------TYKVEKTLNVGLERSWCIATHP  280 (814)
T ss_dssp             ----EEETTSCEEEEETT------TCSEEEEECCSSSSEEEEEECT
T ss_pred             ----EEeCCCeEEEEECC------CCcEEEEeecCCCcEEEEEEcc
Confidence                44456999999998      5667777888889999999987

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-36  Score=294.29  Aligned_cols=278  Identities=14%  Similarity=0.292  Sum_probs=222.6

Q ss_pred             CCCceeEEEecCCCCcEEEEE----------eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATH----------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE  208 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~  208 (496)
                      +...|.+++|+|++..+||+|          +.||.|+|||+.+....         ++...+ .|.. .|++++|+|++
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~---------~~~~~~-~~~~-~v~~~~~s~~~   79 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE---------KPIASL-QVDS-KFNDLDWSHNN   79 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC---------SCSCCC-CCSS-CEEEEEECSSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC---------cEEEEE-ecCC-ceEEEEECCCC
Confidence            345799999999444599999          89999999999876211         122223 4655 69999999999


Q ss_pred             CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      ++|++|+.||.|++||+.....                                    ....+..+.+|...|.+++|+|
T Consensus        80 ~~l~~~~~dg~v~vw~~~~~~~------------------------------------~~~~~~~~~~h~~~v~~~~~~~  123 (416)
T 2pm9_A           80 KIIAGALDNGSLELYSTNEANN------------------------------------AINSMARFSNHSSSVKTVKFNA  123 (416)
T ss_dssp             SCEEEEESSSCEEEECCSSTTS------------------------------------CCCEEEECCCSSSCCCEEEECS
T ss_pred             CeEEEEccCCeEEEeecccccc------------------------------------cccchhhccCCccceEEEEEcC
Confidence            9999999999999999975210                                    1123466788999999999999


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCC------ccc-eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGT------SPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  361 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~------~~~-~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~  361 (496)
                      ++..+|++++.||.|++||+++..      ... ......|...|.+++|+|..+.+|++++.||.|++||+++      
T Consensus       124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~------  197 (416)
T 2pm9_A          124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA------  197 (416)
T ss_dssp             SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT------
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC------
Confidence            844899999999999999998875      221 1223578999999999993389999999999999999998      


Q ss_pred             CCCceEeccC------CCCEEEEEEcCCCCCEEEEEeCCC---cEEEEECCCCCcccCCCCCCCCCCCeeEEEec-CCCC
Q 010997          362 GSPINKFEGH------SAAVLCVQWSPDKSSVFGSSAEDG---LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-GHRD  431 (496)
Q Consensus       362 ~~~~~~~~~h------~~~i~~l~~sp~~~~llas~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~  431 (496)
                      +..+..+..|      ...|.+++|+|++..+|++++.|+   .|++||++....              .+..+. +|..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~--------------~~~~~~~~~~~  263 (416)
T 2pm9_A          198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--------------PLQTLNQGHQK  263 (416)
T ss_dssp             TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS--------------CSBCCCSCCSS
T ss_pred             CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC--------------CcEEeecCccC
Confidence            6777888766      789999999999877888999998   999999987421              222345 8999


Q ss_pred             CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .|.+++|+|.+..++++++.       ||.|++||+.      .++.+.++.+|...|.+++|+|
T Consensus       264 ~v~~~~~s~~~~~~l~s~~~-------dg~v~~wd~~------~~~~~~~~~~~~~~v~~~~~s~  315 (416)
T 2pm9_A          264 GILSLDWCHQDEHLLLSSGR-------DNTVLLWNPE------SAEQLSQFPARGNWCFKTKFAP  315 (416)
T ss_dssp             CEEEEEECSSCSSCEEEEES-------SSEEEEECSS------SCCEEEEEECSSSCCCCEEECT
T ss_pred             ceeEEEeCCCCCCeEEEEeC-------CCCEEEeeCC------CCccceeecCCCCceEEEEECC
Confidence            99999999944444554444       5999999998      5677888889999999999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2e-33  Score=267.61  Aligned_cols=246  Identities=17%  Similarity=0.332  Sum_probs=206.8

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ....+|.+.|.+++|+| ++++|++++.||.|++||+.+..          ......+.+|.. .|.+++|+|++++|++
T Consensus        91 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~----------~~~~~~~~~~~~-~i~~~~~~~~~~~l~~  158 (337)
T 1gxr_A           91 LDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAP-ACYALAISPDSKVCFS  158 (337)
T ss_dssp             EECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSS-CEEEEEECTTSSEEEE
T ss_pred             ccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCC----------cceeeecccCCC-ceEEEEECCCCCEEEE
Confidence            33447999999999999 88899999999999999998762          124556778877 6899999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      ++.||.|++||++++.                                        ....+..|...|.+++|+|++ .+
T Consensus       159 ~~~dg~v~~~d~~~~~----------------------------------------~~~~~~~~~~~i~~~~~~~~~-~~  197 (337)
T 1gxr_A          159 CCSDGNIAVWDLHNQT----------------------------------------LVRQFQGHTDGASCIDISNDG-TK  197 (337)
T ss_dssp             EETTSCEEEEETTTTE----------------------------------------EEEEECCCSSCEEEEEECTTS-SE
T ss_pred             EeCCCcEEEEeCCCCc----------------------------------------eeeeeecccCceEEEEECCCC-CE
Confidence            9999999999997542                                        235677899999999999998 78


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      |++++.||.|++||+++++  ..... .+...+.+++|+| ++.+|++++.||.|++||++.       .....+..|..
T Consensus       198 l~~~~~dg~i~~~d~~~~~--~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~-------~~~~~~~~~~~  266 (337)
T 1gxr_A          198 LWTGGLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNK-------PDKYQLHLHES  266 (337)
T ss_dssp             EEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS-------SCEEEECCCSS
T ss_pred             EEEEecCCcEEEEECCCCc--eEeee-cCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCC-------CCeEEEcCCcc
Confidence            9999999999999999876  34433 5788999999999 899999999999999999997       33567788999


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDC  453 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~  453 (496)
                      .|.+++|+|++.. |++++.||.|++||+...               ..+ ....|...|.+++|+|++.+++       
T Consensus       267 ~v~~~~~~~~~~~-l~~~~~dg~i~~~~~~~~---------------~~~-~~~~~~~~v~~~~~s~~~~~l~-------  322 (337)
T 1gxr_A          267 CVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYG---------------ASI-FQSKESSSVLSCDISVDDKYIV-------  322 (337)
T ss_dssp             CEEEEEECTTSSE-EEEEETTSEEEEEETTTC---------------CEE-EEEECSSCEEEEEECTTSCEEE-------
T ss_pred             ceeEEEECCCCCE-EEEecCCCcEEEEECCCC---------------eEE-EEecCCCcEEEEEECCCCCEEE-------
Confidence            9999999999984 679999999999999874               222 2345788999999999887655       


Q ss_pred             CCCCCCCeEEEeecC
Q 010997          454 DSTGGGGTLQIWRMS  468 (496)
Q Consensus       454 ~sgg~Dg~i~iw~~~  468 (496)
                       +++.||.|++|++.
T Consensus       323 -~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          323 -TGSGDKKATVYEVI  336 (337)
T ss_dssp             -EEETTSCEEEEEEE
T ss_pred             -EecCCCeEEEEEEe
Confidence             44446999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2e-34  Score=269.97  Aligned_cols=245  Identities=22%  Similarity=0.340  Sum_probs=192.6

Q ss_pred             eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997          189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  268 (496)
Q Consensus       189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (496)
                      ..+.+|.+ .|++++|+|+|++|++|+.|++|+|||+...                                      ..
T Consensus         3 ~~~~~h~~-~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------------------------------~~   43 (297)
T 2pm7_B            3 VIANAHNE-MIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------------------------------TH   43 (297)
T ss_dssp             EECCSCSS-CEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------------------------------CB
T ss_pred             eeccCCcC-ceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------------------------------Cc
Confidence            46778988 7999999999999999999999999998632                                      11


Q ss_pred             CCeeeeecCCCceeEEEEccC-CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC--CcEEEEEcCC
Q 010997          269 GPRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSAD  345 (496)
Q Consensus       269 ~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~d  345 (496)
                      ..+..+.+|.+.|.+++|++. .+.+|++|+.|++|++||++++.......+..|...|++++|+| +  +.+|++|+.|
T Consensus        44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~g~~l~s~s~d  122 (297)
T 2pm7_B           44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPMLLVASSD  122 (297)
T ss_dssp             CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC-GGGCSEEEEEETT
T ss_pred             EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc-CCCCcEEEEEECC
Confidence            234678899999999999864 23799999999999999998875334556678999999999999 5  7899999999


Q ss_pred             CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC------------CCEEEEEeCCCcEEEEECCCCCcccCCCC
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK------------SSVFGSSAEDGLLNIWDYEKVGKKVEQGP  413 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~------------~~llas~~~dg~i~iwd~~~~~~~~~~~~  413 (496)
                      |.|++||++...    ......+.+|...|.+++|+|++            ..+||+|+.|+.|+|||++....      
T Consensus       123 ~~v~~wd~~~~~----~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~------  192 (297)
T 2pm7_B          123 GKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------  192 (297)
T ss_dssp             SEEEEEEBCSSS----CBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT------
T ss_pred             CcEEEEEecCCC----ceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc------
Confidence            999999998732    12246778999999999999973            23678999999999999976311      


Q ss_pred             CCCCCCCeeEEEecCCCCCcceEEecCCC--CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEE
Q 010997          414 RTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS  491 (496)
Q Consensus       414 ~~~~~~~~~~~~~~~h~~~V~~~~~~p~~--~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~  491 (496)
                           ...+...+.+|...|.+++|+|++  ..++||++.|       ++|+||++.......... +.....|...|.+
T Consensus       193 -----~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D-------~~v~iWd~~~~~~~~~~~-~~~~~~~~~~v~~  259 (297)
T 2pm7_B          193 -----TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD-------RTCIIWTQDNEQGPWKKT-LLKEEKFPDVLWR  259 (297)
T ss_dssp             -----EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT-------SCEEEEEESSTTSCCEEE-ESSSSCCSSCEEE
T ss_pred             -----eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC-------CcEEEEEeCCCCCcccee-eeecccCCCcEEE
Confidence                 112556788999999999999986  4567766655       999999997421000001 1112467889999


Q ss_pred             eccCC
Q 010997          492 CTSKP  496 (496)
Q Consensus       492 ~~~sP  496 (496)
                      ++|+|
T Consensus       260 ~~~s~  264 (297)
T 2pm7_B          260 ASWSL  264 (297)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99998

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.8e-35  Score=288.92  Aligned_cols=253  Identities=15%  Similarity=0.189  Sum_probs=193.2

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC-CcceeeeecCCCCce
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-NAEFALAMCPTEPYV  211 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~-~~v~~l~~~p~~~~l  211 (496)
                      .+...+|.+.|++|+|+|.++++|++|+.||+|+|||+.+.            ........|.. ..+.+++|+|++.+|
T Consensus       157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l  224 (435)
T 4e54_B          157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN------------ILRVFASSDTINIWFCSLDVSASSRMV  224 (435)
T ss_dssp             EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC------------EEEEEECCSSCSCCCCCEEEETTTTEE
T ss_pred             EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC------------ceeEEeccCCCCccEEEEEECCCCCEE
Confidence            34556899999999999988899999999999999999765            11112222221 246789999999999


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ++|+.||.|++||++...                                         +..+.+|...|++++|+|++.
T Consensus       225 ~~g~~dg~i~~wd~~~~~-----------------------------------------~~~~~~h~~~v~~v~~~p~~~  263 (435)
T 4e54_B          225 VTGDNVGNVILLNMDGKE-----------------------------------------LWNLRMHKKKVTHVALNPCCD  263 (435)
T ss_dssp             EEECSSSBEEEEESSSCB-----------------------------------------CCCSBCCSSCEEEEEECTTCS
T ss_pred             EEEeCCCcEeeeccCcce-----------------------------------------eEEEecccceEEeeeecCCCc
Confidence            999999999999986321                                         245678999999999999987


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccc-eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      .+|++|+.|+.|++||++...... .....+|...|++++|+| ++.+|++|+.||.|+|||+++      +.....+..
T Consensus       264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~------~~~~~~~~~  336 (435)
T 4e54_B          264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQ------WDCPLGLIP  336 (435)
T ss_dssp             SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSS------SSSEEEECC
T ss_pred             eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCC------CccceEEec
Confidence            789999999999999998876322 223457999999999999 999999999999999999998      566666655


Q ss_pred             CCC------CEEEEEEcCCCCCEEEE-----------EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE-ecCCCCC
Q 010997          371 HSA------AVLCVQWSPDKSSVFGS-----------SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ-HAGHRDK  432 (496)
Q Consensus       371 h~~------~i~~l~~sp~~~~llas-----------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~  432 (496)
                      |..      .+..+.|+|++..+++.           +..++.|++||..++               .++.. ..+|...
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---------------~~~~~l~~~~~~~  401 (435)
T 4e54_B          337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---------------KMMCQLYDPESSG  401 (435)
T ss_dssp             CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---------------CEEEEECCSSCCC
T ss_pred             ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---------------cEEEEEeCCCCCc
Confidence            432      23345666666643322           223467999999874               33333 3578888


Q ss_pred             cceE-EecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          433 VVDF-HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       433 V~~~-~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      |.++ +|+|++.++ ++++        |++|+||++.+
T Consensus       402 v~s~~~fspdg~~l-asg~--------d~~i~iW~~~~  430 (435)
T 4e54_B          402 ISSLNEFNPMGDTL-ASAM--------GYHILIWSQQE  430 (435)
T ss_dssp             CCCEEEECTTSSCE-EEEC--------SSEEEECCCC-
T ss_pred             EEEEEEECCCCCEE-EEEc--------CCcEEEEECCc
Confidence            9987 699988765 4443        47999999983

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-35  Score=285.94  Aligned_cols=275  Identities=18%  Similarity=0.282  Sum_probs=220.0

Q ss_pred             cceEEEecCCCceeEEEecCCCCc-EEEEEeCCCcEEEEeC----CCCCCccccCCCCCCCCceEEe----------cCC
Q 010997          131 VKKHKTIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDV----EAQPNRHAVLGATNSRPDLILT----------GHQ  195 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p~~~~-~lat~~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~l~----------~h~  195 (496)
                      .+.+....|.+.|++++|+| ++. +||+|+.||.|++||+    .++......      .....+.          +|.
T Consensus        36 ~~~~~~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  108 (425)
T 1r5m_A           36 VKILKEIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKL------TIIAELRHPFALSASSGKTT  108 (425)
T ss_dssp             CEECEEEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEE------EEEEEEECCCCCC------C
T ss_pred             hhheeeeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccc------cccccccccccccccccCCC
Confidence            34556677889999999999 677 9999999999999999    766310000      0112222          255


Q ss_pred             CCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee
Q 010997          196 DNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN  275 (496)
Q Consensus       196 ~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (496)
                      . .|++++|+|++++|++|+.||.|++||...                                         ..+..+.
T Consensus       109 ~-~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~-----------------------------------------~~~~~~~  146 (425)
T 1r5m_A          109 N-QVTCLAWSHDGNSIVTGVENGELRLWNKTG-----------------------------------------ALLNVLN  146 (425)
T ss_dssp             B-CEEEEEECTTSSEEEEEETTSCEEEEETTS-----------------------------------------CEEEEEC
T ss_pred             C-ceEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----------------------------------------Ceeeecc
Confidence            5 699999999999999999999999999432                                         1235677


Q ss_pred             cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCC---------------eEEEEecCCCCcEEE
Q 010997          276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD---------------LHCVDWNPLDDNLIL  340 (496)
Q Consensus       276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---------------v~~i~~sp~~~~~l~  340 (496)
                      .|...|.+++|+|++ .+|++++.||.|++||++++.  ....+..+...               +.+++|+| + ..++
T Consensus       147 ~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~  221 (425)
T 1r5m_A          147 FHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGT--VMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFV  221 (425)
T ss_dssp             CCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTE--EEEEECCC---------------CCCBSCCEEEE-T-TEEE
T ss_pred             CCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCc--EEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEE
Confidence            899999999999998 789999999999999998876  45555566655               99999998 4 5688


Q ss_pred             EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCC
Q 010997          341 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  420 (496)
Q Consensus       341 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  420 (496)
                      +++.||.|++||++.      +..+..+..|...|.+++|+|++. +|++++.|+.|++||+...               
T Consensus       222 ~~~~~g~i~~~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------------  279 (425)
T 1r5m_A          222 IPGPKGAIFVYQITE------KTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNG---------------  279 (425)
T ss_dssp             EECGGGCEEEEETTC------SSCSEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSB---------------
T ss_pred             EEcCCCeEEEEEcCC------CceeeeeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC---------------
Confidence            999999999999998      788889999999999999999998 5679999999999999874               


Q ss_pred             eeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       421 ~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ..+..+.+|...|.+++|+|++  ++++++.       ||.|++||+.      .++.+..+..|..+|.+++|+|
T Consensus       280 ~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~-------d~~i~i~d~~------~~~~~~~~~~~~~~i~~~~~s~  340 (425)
T 1r5m_A          280 NSQNCFYGHSQSIVSASWVGDD--KVISCSM-------DGSVRLWSLK------QNTLLALSIVDGVPIFAGRISQ  340 (425)
T ss_dssp             SCSEEECCCSSCEEEEEEETTT--EEEEEET-------TSEEEEEETT------TTEEEEEEECTTCCEEEEEECT
T ss_pred             ccceEecCCCccEEEEEECCCC--EEEEEeC-------CCcEEEEECC------CCcEeEecccCCccEEEEEEcC
Confidence            3344567899999999999987  5665544       5999999998      5677778888999999999997

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.7e-35  Score=286.58  Aligned_cols=279  Identities=18%  Similarity=0.346  Sum_probs=221.7

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC-CCCceEEecCCC
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDK  218 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~sg~~Dg  218 (496)
                      ......++++|....++++++.||.|+||++......        ......+.+|.. .|++++|+| ++++|++|+.||
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~--------~~~~~~~~~h~~-~V~~~~~~p~~~~~l~s~s~dg  104 (402)
T 2aq5_A           34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV--------DKNVPLVCGHTA-PVLDIAWCPHNDNVIASGSEDC  104 (402)
T ss_dssp             CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC--------CTTCCCBCCCSS-CEEEEEECTTCTTEEEEEETTS
T ss_pred             ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC--------CCCCceEecCCC-CEEEEEeCCCCCCEEEEEeCCC
Confidence            3456678888855556667899999999999664211        133446788988 799999999 899999999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      +|++||+.++....                                 ....++..+.+|...|.+++|+|++..+|++++
T Consensus       105 ~v~vw~~~~~~~~~---------------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~  151 (402)
T 2aq5_A          105 TVMVWEIPDGGLVL---------------------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG  151 (402)
T ss_dssp             EEEEEECCTTCCSS---------------------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred             eEEEEEccCCCCcc---------------------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence            99999998643211                                 111345778899999999999999867999999


Q ss_pred             CCCeEEEEEccCCCccceeee--ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccCCCC-
Q 010997          299 DDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAA-  374 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~-  374 (496)
                      .||.|++||+++++  ....+  ..|...|.+++|+| ++.+|++++.||.|++||+++      +..+..+ ..|.+. 
T Consensus       152 ~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~  222 (402)
T 2aq5_A          152 CDNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRK------GTVVAEKDRPHEGTR  222 (402)
T ss_dssp             TTSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTT------TEEEEEEECSSCSSS
T ss_pred             CCCEEEEEECCCCC--ccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCC------CceeeeeccCCCCCc
Confidence            99999999999877  55566  68999999999999 999999999999999999998      7788888 788776 


Q ss_pred             EEEEEEcCCCCCEEEEE---eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997          375 VLCVQWSPDKSSVFGSS---AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       375 i~~l~~sp~~~~llas~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      +.+++|+|++. +|++|   +.|+.|++||++....             ........|...|.+++|+|++..++++++.
T Consensus       223 ~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~  288 (402)
T 2aq5_A          223 PVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEE-------------PLSLQELDTSSGVLLPFFDPDTNIVYLCGKG  288 (402)
T ss_dssp             CCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSS-------------CSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccC-------------CceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence            89999999988 56788   7899999999987421             1122233567789999999999888765544


Q ss_pred             CCCCCCCCCeEEEeecCCCCcCCchHH-HHHHHhc--cceEEEeccCC
Q 010997          452 DCDSTGGGGTLQIWRMSDLIYRPQDEV-LAELEKF--KAHVISCTSKP  496 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~~~~~~~~~~~-~~~l~~h--~~~v~~~~~sP  496 (496)
                             ||.|++|++..      ++. +..+..|  ..+|.+++|+|
T Consensus       289 -------dg~i~i~d~~~------~~~~~~~l~~~~~~~~v~~~~~sp  323 (402)
T 2aq5_A          289 -------DSSIRYFEITS------EAPFLHYLSMFSSKESQRGMGYMP  323 (402)
T ss_dssp             -------CSCEEEEEECS------STTCEEEEEEECCSSCCSEEEECC
T ss_pred             -------CCeEEEEEecC------CCcceEeecccccCCcccceEEec
Confidence                   59999999983      332 4444444  58899999987

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.9e-34  Score=274.85  Aligned_cols=306  Identities=14%  Similarity=0.199  Sum_probs=226.3

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      |..++.|.|+        ...|+.|     +.++.+.||+..-..                   ........+|.+.|++
T Consensus        10 ~i~~~~~s~~--------~~~l~~~-----~~d~~v~i~~~~~~~-------------------~~~~~~~~~h~~~v~~   57 (372)
T 1k8k_C           10 PISCHAWNKD--------RTQIAIC-----PNNHEVHIYEKSGNK-------------------WVQVHELKEHNGQVTG   57 (372)
T ss_dssp             CCCEEEECTT--------SSEEEEE-----CSSSEEEEEEEETTE-------------------EEEEEEEECCSSCEEE
T ss_pred             CeEEEEECCC--------CCEEEEE-----eCCCEEEEEeCCCCc-------------------EEeeeeecCCCCcccE
Confidence            5667888775        1344444     356789999864310                   0123344589999999


Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI  225 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~  225 (496)
                      ++|+| ++++|++++.||.|++||+.+..          ......+.+|.. .|.+++|+|++++|++|+.||.|++||+
T Consensus        58 ~~~~~-~~~~l~~~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~v~i~d~  125 (372)
T 1k8k_C           58 VDWAP-DSNRIVTCGTDRNAYVWTLKGRT----------WKPTLVILRINR-AARCVRWAPNEKKFAVGSGSRVISICYF  125 (372)
T ss_dssp             EEEET-TTTEEEEEETTSCEEEEEEETTE----------EEEEEECCCCSS-CEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred             EEEeC-CCCEEEEEcCCCeEEEEECCCCe----------eeeeEEeecCCC-ceeEEEECCCCCEEEEEeCCCEEEEEEe
Confidence            99999 88999999999999999997761          112233456766 6999999999999999999999999999


Q ss_pred             CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997          226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL  305 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  305 (496)
                      +......                                    ........|...|.+++|+|++ .+|++++.||.|++
T Consensus       126 ~~~~~~~------------------------------------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~  168 (372)
T 1k8k_C          126 EQENDWW------------------------------------VCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRI  168 (372)
T ss_dssp             ETTTTEE------------------------------------EEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred             cCCCcce------------------------------------eeeeeecccCCCeeEEEEcCCC-CEEEEEcCCCCEEE
Confidence            7542100                                    0012235688999999999998 79999999999999


Q ss_pred             EEccCC----------------CccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          306 WDARVG----------------TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       306 wd~~~~----------------~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      ||++..                .......+..|...|.+++|+| ++.+|++++.||.|++||+++      +.++..+.
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~  241 (372)
T 1k8k_C          169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK------KMAVATLA  241 (372)
T ss_dssp             EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG------TTEEEEEE
T ss_pred             EEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC-CCCEEEEEeCCCEEEEEECCC------CceeEEEc
Confidence            997521                1225666678999999999999 899999999999999999998      78899999


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC--CCcccC-CCCCCC----------------CCCCeeE------E
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKVE-QGPRTT----------------NYPAGLF------F  424 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~--~~~~~~-~~~~~~----------------~~~~~~~------~  424 (496)
                      .|...|.+++|+|++. +|++| .|+.|++|++..  ..-... ......                .......      .
T Consensus       242 ~~~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (372)
T 1k8k_C          242 SETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA  319 (372)
T ss_dssp             CSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------C
T ss_pred             cCCCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccc
Confidence            9999999999999998 56566 899999999987  210000 000000                0000010      1


Q ss_pred             Ee-cCCCCCcceEEecCCCC---cEEEEecCCCCCCCCCCeEEEeecC
Q 010997          425 QH-AGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       425 ~~-~~h~~~V~~~~~~p~~~---~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .+ .+|...|++++|++.+.   .+++|++.       ||.|+||++.
T Consensus       320 ~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~-------Dg~i~~W~~~  360 (372)
T 1k8k_C          320 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGM-------DGGMSIWDVR  360 (372)
T ss_dssp             CCSSSSSSCEEEEEEEESTTTSCSEEEEEET-------TSEEEEEEHH
T ss_pred             cccccccCCcceeEEecCCCcceeeEEEecC-------CCceEEEEec
Confidence            22 48999999999885554   56665555       5999999997

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-34  Score=280.84  Aligned_cols=248  Identities=11%  Similarity=0.119  Sum_probs=186.9

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      |..++.|.|+-        ..|+     .++.++.+.||+.....+                   .......+|.+.|++
T Consensus        13 ~v~~~~~s~~g--------~~l~-----~~~~d~~i~iw~~~~~~~-------------------~~~~~~~~h~~~v~~   60 (377)
T 3dwl_C           13 PSYEHAFNSQR--------TEFV-----TTTATNQVELYEQDGNGW-------------------KHARTFSDHDKIVTC   60 (377)
T ss_dssp             CCSCCEECSSS--------SEEE-----CCCSSSCBCEEEEETTEE-------------------EECCCBCCCSSCEEE
T ss_pred             cEEEEEECCCC--------CEEE-----EecCCCEEEEEEccCCce-------------------EEEEEEecCCceEEE
Confidence            56677777741        2332     345678889998753110                   011233479999999


Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI  225 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~  225 (496)
                      ++|+| ++++||+++.||.|+|||+.+..         ...+...+.+|.. .|.+++|+|++++|++|+.|+.|++||+
T Consensus        61 ~~~s~-~~~~l~s~s~d~~v~vwd~~~~~---------~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~  129 (377)
T 3dwl_C           61 VDWAP-KSNRIVTCSQDRNAYVYEKRPDG---------TWKQTLVLLRLNR-AATFVRWSPNEDKFAVGSGARVISVCYF  129 (377)
T ss_dssp             EEECT-TTCCEEEEETTSSEEEC---------------CCCCEEECCCCSS-CEEEEECCTTSSCCEEEESSSCEEECCC
T ss_pred             EEEeC-CCCEEEEEeCCCeEEEEEcCCCC---------ceeeeeEecccCC-ceEEEEECCCCCEEEEEecCCeEEEEEE
Confidence            99999 78899999999999999998872         1235667788887 6999999999999999999999999999


Q ss_pred             CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEEEEcCCCeEE
Q 010997          226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSVGDDSCLI  304 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~  304 (496)
                      ++...                                     ......+.. |...|.+++|+|++ .+|++++.|+.|+
T Consensus       130 ~~~~~-------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~  171 (377)
T 3dwl_C          130 EQEND-------------------------------------WWVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAY  171 (377)
T ss_dssp             ------------------------------------------CCCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEE
T ss_pred             CCccc-------------------------------------ceeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEE
Confidence            75421                                     112245666 99999999999998 7999999999999


Q ss_pred             EEEccCCC----------------ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC----
Q 010997          305 LWDARVGT----------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP----  364 (496)
Q Consensus       305 iwd~~~~~----------------~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~----  364 (496)
                      +||++...                ......+ .|...|++++|+| ++.+|++|+.||.|++||+++      +..    
T Consensus       172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~------~~~~~~~  243 (377)
T 3dwl_C          172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSA------PEQPPRA  243 (377)
T ss_dssp             EEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECS------TTSCEEE
T ss_pred             EEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCC------CCCccee
Confidence            99996322                1133344 8999999999999 899999999999999999998      555    


Q ss_pred             ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      +..+.+|...|.+++|+|++. +|++++.|+ +.+|+...
T Consensus       244 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~-~~~~~~~~  281 (377)
T 3dwl_C          244 LITVKLSQLPLRSLLWANESA-IVAAGYNYS-PILLQGNE  281 (377)
T ss_dssp             CCCEECSSSCEEEEEEEETTE-EEEEESSSS-EEEECCCC
T ss_pred             eEeecCCCCceEEEEEcCCCC-EEEEEcCCc-EEEEEeCC
Confidence            788899999999999999998 567877555 55787764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-33  Score=270.89  Aligned_cols=257  Identities=14%  Similarity=0.126  Sum_probs=212.0

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ...+|.+.|.+++|+| ++++|++++.||.|++||+.++            +....+. |.. .|.+++|+|++++|+++
T Consensus        69 ~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~-~~~-~v~~~~~~~~~~~l~~~  133 (369)
T 3zwl_B           69 TLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNG------------QCVATWK-SPV-PVKRVEFSPCGNYFLAI  133 (369)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEE-CSS-CEEEEEECTTSSEEEEE
T ss_pred             hhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEee-cCC-CeEEEEEccCCCEEEEe
Confidence            4457999999999999 8899999999999999999887            4555565 554 68999999999999999


Q ss_pred             cCC-----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC--ceeEEEEc
Q 010997          215 GKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED--TVEDVTFC  287 (496)
Q Consensus       215 ~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~  287 (496)
                      +.+     |.|++||+...........                             ........+..|..  .+.+++|+
T Consensus       134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~  184 (369)
T 3zwl_B          134 LDNVMKNPGSINIYEIERDSATHELTK-----------------------------VSEEPIHKIITHEGLDAATVAGWS  184 (369)
T ss_dssp             ECCBTTBCCEEEEEEEEECTTTCCEEE-----------------------------ECSSCSEEEECCTTCCCEEEEEEC
T ss_pred             cCCccCCCCEEEEEEecCCccceeecc-----------------------------cccceeeeccCCcCccceeEEEEc
Confidence            998     9999999986533211110                             11223355666776  99999999


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      |++ .+|++++.||.|++||+++... ....+..|...|.+++|+| ++.+|++++.||.|++||+++      +..+..
T Consensus       185 ~~~-~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~------~~~~~~  255 (369)
T 3zwl_B          185 TKG-KYIIAGHKDGKISKYDVSNNYE-YVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVST------LQVLKK  255 (369)
T ss_dssp             GGG-CEEEEEETTSEEEEEETTTTTE-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------CCEEEE
T ss_pred             CCC-CEEEEEcCCCEEEEEECCCCcE-eEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCC------Cceeee
Confidence            998 7899999999999999998432 5666778999999999999 899999999999999999998      677777


Q ss_pred             eccCCCCEEEEEEcCCCCCEEEEEeCCC--------------cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc
Q 010997          368 FEGHSAAVLCVQWSPDKSSVFGSSAEDG--------------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  433 (496)
Q Consensus       368 ~~~h~~~i~~l~~sp~~~~llas~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  433 (496)
                      +. +...+.+++|+|++.+ +++++.++              .+++||+...               ..+..+.+|...|
T Consensus       256 ~~-~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------------~~~~~~~~~~~~v  318 (369)
T 3zwl_B          256 YE-TDCPLNTAVITPLKEF-IILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------------EEIGRVQGHFGPL  318 (369)
T ss_dssp             EE-CSSCEEEEEECSSSSE-EEEEECCC-------------CEEEEEETTTC---------------CEEEEEECCSSCE
T ss_pred             ec-CCCCceeEEecCCCce-EEEeecCCCceEEEEecCCCcceeEEEecCCC---------------cchhheecccCcE
Confidence            76 7889999999999996 55777777              8999998874               5566778999999


Q ss_pred             ceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          434 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       434 ~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      ++++|+|++.+++        +|+.||.|+||++..
T Consensus       319 ~~~~~s~~~~~l~--------s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          319 NTVAISPQGTSYA--------SGGEDGFIRLHHFEK  346 (369)
T ss_dssp             EEEEECTTSSEEE--------EEETTSEEEEEEECH
T ss_pred             EEEEECCCCCEEE--------EEcCCCeEEEEECcc
Confidence            9999999887554        444569999999984

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.2e-36  Score=290.11  Aligned_cols=258  Identities=12%  Similarity=0.153  Sum_probs=197.7

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      .|.+.|++++|+| ++++||+|+.||.|+|||+.+..          .+....+.+|.. .|++++|+|++++|++|+.|
T Consensus         9 ~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~----------~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~d   76 (377)
T 3dwl_C            9 ILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNG----------WKHARTFSDHDK-IVTCVDWAPKSNRIVTCSQD   76 (377)
T ss_dssp             ECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTE----------EEECCCBCCCSS-CEEEEEECTTTCCEEEEETT
T ss_pred             cCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCc----------eEEEEEEecCCc-eEEEEEEeCCCCEEEEEeCC
Confidence            4678999999999 88999999999999999998651          123456778987 69999999999999999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      |+|++||+.++.                                     ...+...+.+|...|.+++|+|++ .+|+++
T Consensus        77 ~~v~vwd~~~~~-------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~  118 (377)
T 3dwl_C           77 RNAYVYEKRPDG-------------------------------------TWKQTLVLLRLNRAATFVRWSPNE-DKFAVG  118 (377)
T ss_dssp             SSEEEC-------------------------------------------CCCCEEECCCCSSCEEEEECCTTS-SCCEEE
T ss_pred             CeEEEEEcCCCC-------------------------------------ceeeeeEecccCCceEEEEECCCC-CEEEEE
Confidence            999999997643                                     012235667899999999999998 789999


Q ss_pred             cCCCeEEEEEccCCCc-cceeeecc-CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC------------CCCC
Q 010997          298 GDDSCLILWDARVGTS-PVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------------GVGS  363 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~-~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~------------~~~~  363 (496)
                      +.|+.|++||++.+.. .....+.. |...|++++|+| ++.+|++|+.||.|++||++.....            ..+.
T Consensus       119 ~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  197 (377)
T 3dwl_C          119 SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNT  197 (377)
T ss_dssp             ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred             ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhh
Confidence            9999999999988752 12444555 999999999999 8999999999999999999632100            0134


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  443 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~  443 (496)
                      ++..+ +|...|.+++|+|++.+ |++++.||.|++||+.....           +...+..+.+|...|.+++|+|++.
T Consensus       198 ~~~~~-~~~~~v~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~~~  264 (377)
T 3dwl_C          198 VCAEY-PSGGWVHAVGFSPSGNA-LAYAGHDSSVTIAYPSAPEQ-----------PPRALITVKLSQLPLRSLLWANESA  264 (377)
T ss_dssp             EEECC-CCSSSEEEEEECTTSSC-EEEEETTTEEC-CEECSTTS-----------CEEECCCEECSSSCEEEEEEEETTE
T ss_pred             hhhcc-cCCceEEEEEECCCCCE-EEEEeCCCcEEEEECCCCCC-----------cceeeEeecCCCCceEEEEEcCCCC
Confidence            55566 89999999999999995 57999999999999987421           1223556788999999999999876


Q ss_pred             cEEEEecCCCCCCCCCCeEEEeecC
Q 010997          444 WTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       444 ~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      + ++++++       |+.+ +|+..
T Consensus       265 ~-l~~~~~-------~~~~-~~~~~  280 (377)
T 3dwl_C          265 I-VAAGYN-------YSPI-LLQGN  280 (377)
T ss_dssp             E-EEEESS-------SSEE-EECCC
T ss_pred             E-EEEEcC-------CcEE-EEEeC
Confidence            4 555444       3555 67665

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-34  Score=281.99  Aligned_cols=273  Identities=15%  Similarity=0.223  Sum_probs=219.6

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec-CCCCcceeeeecCCCCce
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-HQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~-h~~~~v~~l~~~p~~~~l  211 (496)
                      .+...+|...+.+..+.+ ++..+++++.||.|++||+.++            +....+.. |.. .|.+++|+|++++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~-s~~~l~~~~~d~~v~lw~~~~~------------~~~~~~~~~~~~-~v~~v~~s~~~~~l  149 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDW-SNLNVVAVALERNVYVWNADSG------------SVSALAETDEST-YVASVKWSHDGSFL  149 (401)
T ss_dssp             EEECTTCCCCTTCBCEEE-CTTSEEEEEETTEEEEEETTTC------------CEEEEEECCTTC-CEEEEEECTTSSEE
T ss_pred             eeeCCCCcCCceEEEEee-cCCCEEEEECCCeEEEeeCCCC------------cEeEeeecCCCC-CEEEEEECCCCCEE
Confidence            444557776654443333 2345778889999999999887            44455555 554 79999999999999


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ++|+.||.|++||+.++.                                        .+..+.+|...|.+++|++   
T Consensus       150 ~~~~~dg~i~iwd~~~~~----------------------------------------~~~~~~~~~~~v~~~~~~~---  186 (401)
T 4aez_A          150 SVGLGNGLVDIYDVESQT----------------------------------------KLRTMAGHQARVGCLSWNR---  186 (401)
T ss_dssp             EEEETTSCEEEEETTTCC----------------------------------------EEEEECCCSSCEEEEEEET---
T ss_pred             EEECCCCeEEEEECcCCe----------------------------------------EEEEecCCCCceEEEEECC---
Confidence            999999999999987542                                        2366778999999999943   


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      .+|++++.||.|++||++.... ....+..|...|.+++|+| ++.+|++|+.||.|++||+++      +.++..+..|
T Consensus       187 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~  258 (401)
T 4aez_A          187 HVLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARS------SIPKFTKTNH  258 (401)
T ss_dssp             TEEEEEETTSEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTC------SSEEEEECCC
T ss_pred             CEEEEEcCCCCEEEEecccCcc-eeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCC------CCccEEecCC
Confidence            6899999999999999985542 4566778999999999999 999999999999999999998      7888899999


Q ss_pred             CCCEEEEEEcCCCCCEEEEEe--CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          372 SAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      ...|.+++|+|++..++++++  .|+.|++||+...               ..+..+ .|...|.+++|+|++..++++ 
T Consensus       259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---------------~~~~~~-~~~~~v~~~~~s~~~~~l~~~-  321 (401)
T 4aez_A          259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---------------ARVNTV-DAGSQVTSLIWSPHSKEIMST-  321 (401)
T ss_dssp             SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---------------CEEEEE-ECSSCEEEEEECSSSSEEEEE-
T ss_pred             cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---------------CEEEEE-eCCCcEEEEEECCCCCeEEEE-
Confidence            999999999999988988876  7999999999874               233333 356789999999999887754 


Q ss_pred             cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                           +|+.||.|+||++...    .......+.+|.+.|.+++|+|
T Consensus       322 -----~g~~dg~i~v~~~~~~----~~~~~~~~~~h~~~v~~~~~s~  359 (401)
T 4aez_A          322 -----HGFPDNNLSIWSYSSS----GLTKQVDIPAHDTRVLYSALSP  359 (401)
T ss_dssp             -----ECTTTCEEEEEEEETT----EEEEEEEEECCSSCCCEEEECT
T ss_pred             -----eecCCCcEEEEecCCc----cceeEEEecCCCCCEEEEEECC
Confidence                 2445799999999832    1223344678999999999997

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=9.1e-35  Score=277.75  Aligned_cols=268  Identities=11%  Similarity=0.170  Sum_probs=215.0

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGK  216 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~  216 (496)
                      +|.+.|++++|+| ++.+||+++.||.|+|||+......         .+...+.+|.. .|.+++|+|+++ +|++|+.
T Consensus         9 ~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~---------~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~   77 (342)
T 1yfq_A            9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN---------VDLLQSLRYKH-PLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             CCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE---------EEEEEEEECSS-CEEEEEEEESSSEEEEEEET
T ss_pred             CCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCcc---------ccceeeeecCC-ceEEEEECCCCCcEEEEEcC
Confidence            7999999999999 8889999999999999999876211         12345567877 799999999999 9999999


Q ss_pred             CCcEEEEec-CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec--CCCceeEEEEccCCCce
Q 010997          217 DKSVVLWSI-QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG--HEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       217 Dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~  293 (496)
                      ||.|++||+ .++..                                         ..+.+  |...|.+++|+| + .+
T Consensus        78 dg~i~~wd~~~~~~~-----------------------------------------~~~~~~~~~~~v~~l~~~~-~-~~  114 (342)
T 1yfq_A           78 QGEILKVDLIGSPSF-----------------------------------------QALTNNEANLGICRICKYG-D-DK  114 (342)
T ss_dssp             TSCEEEECSSSSSSE-----------------------------------------EECBSCCCCSCEEEEEEET-T-TE
T ss_pred             CCeEEEEEeccCCce-----------------------------------------EeccccCCCCceEEEEeCC-C-CE
Confidence            999999999 65321                                         45667  999999999999 6 79


Q ss_pred             EEEEcCCCeEEEEEccC---------CCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC-CCCCCCCC
Q 010997          294 FCSVGDDSCLILWDARV---------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN-LTSNGVGS  363 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~-~~~~~~~~  363 (496)
                      |++++.|+.|++||+++         .+  ....+ .|...|.+++|+| ++  +++++.|+.|++||++. ..    ..
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~-~~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~----~~  184 (342)
T 1yfq_A          115 LIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNT-KVKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCED----DN  184 (342)
T ss_dssp             EEEEETTSEEEEECHHHHTTBCEEEEES--CSSSS-SSCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTT----CC
T ss_pred             EEEEcCCCeEEEEcccccccccccccCC--eeeEE-eeCCceEEEEecC-Cc--EEEEeCCCeEEEEECCcccc----cc
Confidence            99999999999999987         54  33344 3889999999998 55  99999999999999987 43    22


Q ss_pred             CceEeccCCCCEEEEEEcC-CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC---------CCc
Q 010997          364 PINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR---------DKV  433 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp-~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~V  433 (496)
                      .......|...|.+++|+| ++. +|++++.||.|++|++...+...         .......+.+|.         ..|
T Consensus       185 ~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i  254 (342)
T 1yfq_A          185 GTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDY---------NSSKRFAFRCHRLNLKDTNLAYPV  254 (342)
T ss_dssp             CEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCST---------TCTTCEEEECCCCCTTCCSSCCCE
T ss_pred             ceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCccc---------ccccceeeecccccccccccceeE
Confidence            3445567889999999999 888 56799999999999998741100         012233345554         499


Q ss_pred             ceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhc-cceEEEec
Q 010997          434 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF-KAHVISCT  493 (496)
Q Consensus       434 ~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h-~~~v~~~~  493 (496)
                      .+++|+|++.+++        +|+.||.|++||+.      .++.+..+.+| .++|.+++
T Consensus       255 ~~~~~s~~~~~l~--------~~~~dg~i~vwd~~------~~~~~~~~~~~h~~~v~~~~  301 (342)
T 1yfq_A          255 NSIEFSPRHKFLY--------TAGSDGIISCWNLQ------TRKKIKNFAKFNEDSVVKIA  301 (342)
T ss_dssp             EEEEECTTTCCEE--------EEETTSCEEEEETT------TTEEEEECCCCSSSEEEEEE
T ss_pred             EEEEEcCCCCEEE--------EecCCceEEEEcCc------cHhHhhhhhcccCCCceEec
Confidence            9999999888765        44456999999998      57777888898 99999886

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.1e-33  Score=275.01  Aligned_cols=245  Identities=15%  Similarity=0.175  Sum_probs=195.3

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC--CcceeeeecCCCCceEE
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVLS  213 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~--~~v~~l~~~p~~~~l~s  213 (496)
                      ..+|.+.|.+++|+|.++.+|++++.||.|++||+...             ....+..|..  ..|.+++|+|++++|++
T Consensus       114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  180 (383)
T 3ei3_B          114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-------------VIQVFAKTDSWDYWYCCVDVSVSRQMLAT  180 (383)
T ss_dssp             CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-------------EEEEEECCCCSSCCEEEEEEETTTTEEEE
T ss_pred             cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-------------ceEEEeccCCCCCCeEEEEECCCCCEEEE
Confidence            34799999999999977889999999999999999853             2234444431  36899999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      |+.||.|++||++.                                         .++..+.+|...|.+++|+|++..+
T Consensus       181 ~~~d~~i~i~d~~~-----------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          181 GDSTGRLLLLGLDG-----------------------------------------HEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EETTSEEEEEETTS-----------------------------------------CEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             ECCCCCEEEEECCC-----------------------------------------CEEEEeccCCCcEEEEEECCCCCCE
Confidence            99999999999842                                         1236678899999999999999559


Q ss_pred             EEEEcCCCeEEEEEccCCCc--cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          294 FCSVGDDSCLILWDARVGTS--PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      |++++.|+.|++||+++...  .....+ .|...|.+++|+|.++.+|++++.||.|++||+++      +..+..+.+|
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~  292 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD------WSKPDQIIIH  292 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB------TTSCSEEEEC
T ss_pred             EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC------Cccccccccc
Confidence            99999999999999998431  134444 79999999999996789999999999999999998      4555555544


Q ss_pred             C-----------------CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC--CCCC
Q 010997          372 S-----------------AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDK  432 (496)
Q Consensus       372 ~-----------------~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~  432 (496)
                      .                 ..+..++|+|++.+   +++.|+.|+|||+...               .++..+.+  |...
T Consensus       293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~~---------------~~~~~l~~~~~~~~  354 (383)
T 3ei3_B          293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLNDKRTIDIYDANSG---------------GLVHQLRDPNAAGI  354 (383)
T ss_dssp             CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTTCCCCEEEEETTTC---------------CEEEEECBTTBCSC
T ss_pred             cccccccccceEEeccCCCCceEEEecCCccc---ccCCCCeEEEEecCCC---------------ceeeeecCCCCCce
Confidence            2                 34555777777764   7778999999999874               34555655  4567


Q ss_pred             cceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          433 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       433 V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +..++|+|++.+++ +++        ||.|+||++.
T Consensus       355 ~~~~~~s~~g~~l~-s~s--------d~~i~iw~~~  381 (383)
T 3ei3_B          355 ISLNKFSPTGDVLA-SGM--------GFNILIWNRE  381 (383)
T ss_dssp             CCEEEECTTSSEEE-EEE--------TTEEEEEECC
T ss_pred             EEEEEEecCccEEE-Eec--------CCcEEEEecC
Confidence            77789999887654 333        5999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-34  Score=284.43  Aligned_cols=267  Identities=14%  Similarity=0.174  Sum_probs=206.6

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  222 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i  222 (496)
                      +....|+| ++++||+|+.||.|+|||+.+.            +....+.+|.. .|++++|+|++++|++|+.||+|++
T Consensus       100 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~h~~-~v~~~~~~~~~~~l~s~s~d~~i~i  165 (420)
T 3vl1_A          100 TAVDTAKL-QMRRFILGTTEGDIKVLDSNFN------------LQREIDQAHVS-EITKLKFFPSGEALISSSQDMQLKI  165 (420)
T ss_dssp             EEEEEECS-SSCEEEEEETTSCEEEECTTSC------------EEEEETTSSSS-CEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eEEEEEec-CCCEEEEEECCCCEEEEeCCCc------------ceeeecccccC-ccEEEEECCCCCEEEEEeCCCeEEE
Confidence            44445666 8899999999999999999876            44556678887 7999999999999999999999999


Q ss_pred             EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe
Q 010997          223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  302 (496)
Q Consensus       223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  302 (496)
                      ||+.++.                                        .+..+.+|...|.+++|+|++ .+|++++.||.
T Consensus       166 wd~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~  204 (420)
T 3vl1_A          166 WSVKDGS----------------------------------------NPRTLIGHRATVTDIAIIDRG-RNVLSASLDGT  204 (420)
T ss_dssp             EETTTCC----------------------------------------CCEEEECCSSCEEEEEEETTT-TEEEEEETTSC
T ss_pred             EeCCCCc----------------------------------------CceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCc
Confidence            9997542                                        236678899999999999998 78999999999


Q ss_pred             EEEEEccCCCccceeeecc---CC---------------------CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          303 LILWDARVGTSPVIKVEKA---HD---------------------ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       303 i~iwd~~~~~~~~~~~~~~---~~---------------------~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      |++||+++++  ....+..   +.                     ..+.+++|+| ++.+|++|+.||.|++||+++   
T Consensus       205 v~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~---  278 (420)
T 3vl1_A          205 IRLWECGTGT--TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFS---  278 (420)
T ss_dssp             EEEEETTTTE--EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTT---
T ss_pred             EEEeECCCCc--eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCC---
Confidence            9999999876  3444432   33                     4455556678 899999999999999999998   


Q ss_pred             CCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceE
Q 010997          359 NGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDF  436 (496)
Q Consensus       359 ~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~  436 (496)
                         +..+..+ ..|...|.+++|+|++..+|++|+.||.|++||++....              ++..+.+ |...|..+
T Consensus       279 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~v~~~  341 (420)
T 3vl1_A          279 ---KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--------------PVGEFLINEGTPINNV  341 (420)
T ss_dssp             ---CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------------CSEEEEESTTSCEEEE
T ss_pred             ---CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--------------chhhhhccCCCCceEE
Confidence               5656555 458899999999999986678999999999999987421              1223333 67788888


Q ss_pred             EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC---chHHHHHHHhccceEEEeccCC
Q 010997          437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP---QDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~---~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .|. ++. ++++       ++.||.|++|++.......   .......+.+|.+.|.+++|+|
T Consensus       342 ~~~-~~~-~l~s-------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  395 (420)
T 3vl1_A          342 YFA-AGA-LFVS-------SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS  395 (420)
T ss_dssp             EEE-TTE-EEEE-------ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC
T ss_pred             EeC-CCC-EEEE-------ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEcc
Confidence            665 455 5554       4455999999998521110   0111223557888899999987

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-34  Score=285.78  Aligned_cols=272  Identities=12%  Similarity=0.198  Sum_probs=197.3

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      .+|.+.|++++|+|.++.+||+|+.||.|+|||+.+.....      ..+....+ +|.. .|++++|+|++++|++|+.
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~------~~~~~~~~-~h~~-~v~~~~~~~~~~~l~s~s~  131 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE------VYSSSLTY-DCSS-TVTQITMIPNFDAFAVSSK  131 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC------CCSCSEEE-ECSS-CEEEEEECTTSSEEEEEET
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc------ccceeeec-cCCC-CEEEEEEeCCCCEEEEEeC
Confidence            47899999999999677899999999999999987621000      01223333 4776 7999999999999999999


Q ss_pred             CCcEEEEecCC---ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--c--CCCceeEEE--Ec
Q 010997          217 DKSVVLWSIQD---HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--G--HEDTVEDVT--FC  287 (496)
Q Consensus       217 Dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--h~~~v~~l~--~~  287 (496)
                      ||+|++||++.   +.......                                ...+..+.  .  +...+.++.  ++
T Consensus       132 dg~i~vwd~~~~~~~~~~~~~~--------------------------------~~~i~~~~~~~~~~~~~~~~~~~~~~  179 (437)
T 3gre_A          132 DGQIIVLKVNHYQQESEVKFLN--------------------------------CECIRKINLKNFGKNEYAVRMRAFVN  179 (437)
T ss_dssp             TSEEEEEEEEEEEETTEEEEEE--------------------------------EEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred             CCEEEEEEeccccCCceeeccc--------------------------------cceeEEEEccCcccccCceEEEEEEc
Confidence            99999999952   21110000                                00111111  2  556677777  55


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceeeecc--CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  365 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  365 (496)
                      +++ .+|++++.|+.|++||+++++  ....+..  |...|++++|+| ++.+|++|+.||.|++||+++      +.++
T Consensus       180 ~~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~------~~~~  249 (437)
T 3gre_A          180 EEK-SLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRF------NVLI  249 (437)
T ss_dssp             SSC-EEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTT------TEEE
T ss_pred             CCC-CEEEEEeCCCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCC------ccEE
Confidence            777 799999999999999999987  5566656  889999999999 899999999999999999998      7788


Q ss_pred             eEec-cCCCCEEEEEEcC----CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE----------EecC--
Q 010997          366 NKFE-GHSAAVLCVQWSP----DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF----------QHAG--  428 (496)
Q Consensus       366 ~~~~-~h~~~i~~l~~sp----~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--  428 (496)
                      ..+. .|...|.+++|+|    ++. +|++|+.||.|++||+.............. .+....+          .+.+  
T Consensus       250 ~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~  327 (437)
T 3gre_A          250 RSWSFGDHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHCQYAFINSDE-QPSMEHFLPIEKGLEELNFCGIR  327 (437)
T ss_dssp             EEEBCTTCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEEEEEEESSSS-CCCGGGGSCBCSSGGGCCCCCCC
T ss_pred             EEEecCCCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcEEEEEEcCCC-CCccceecccccccccceecccc
Confidence            8876 7888999997765    455 678999999999999987422111100000 0000000          1233  


Q ss_pred             CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          429 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       429 h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      |...|++++|+ ++. ++++++.       ||.|++||+..
T Consensus       328 ~~~~v~~l~~~-~~~-~l~s~~~-------d~~i~~wd~~~  359 (437)
T 3gre_A          328 SLNALSTISVS-NDK-ILLTDEA-------TSSIVMFSLNE  359 (437)
T ss_dssp             SGGGGCCEEEE-TTE-EEEEEGG-------GTEEEEEETTC
T ss_pred             cCCceEEEEEC-Cce-EEEecCC-------CCeEEEEECCC
Confidence            77789999999 454 5555544       59999999984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.6e-33  Score=271.24  Aligned_cols=277  Identities=17%  Similarity=0.229  Sum_probs=208.0

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCce-----EEecCCCCcceeeeecC-CC
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-----ILTGHQDNAEFALAMCP-TE  208 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----~l~~h~~~~v~~l~~~p-~~  208 (496)
                      ...+|.+.|++++|+|.++++||+|+.||.|+|||+.+.........    ....     ...+|.. .|.+++|+| ++
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~v~~~~~~~~~~  112 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC----KAVCSIGRDHPDVHRY-SVETVQWYPHDT  112 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEE----CEEEEECTTCTTCCSS-CEEEEEECTTCT
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEec----cccccccccccccCCC-cEEEEEEccCCC
Confidence            34579999999999997788999999999999999998732211000    0000     0124776 799999999 67


Q ss_pred             CceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          209 PYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       209 ~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      .+|++|+.||.|++||+.++..                                        ...+ .+...+.++.|+|
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~----------------------------------------~~~~-~~~~~~~~~~~~~  151 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQT----------------------------------------ADVF-NFEETVYSHHMSP  151 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEE----------------------------------------EEEE-ECSSCEEEEEECS
T ss_pred             cEEEEEeCCCeEEEeeCCCCcc----------------------------------------ceec-cCCCceeeeEeec
Confidence            7999999999999999976432                                        1222 3677899999998


Q ss_pred             CCC--ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCC------
Q 010997          289 SSA--QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSN------  359 (496)
Q Consensus       289 ~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~------  359 (496)
                      .+.  .++++++.||.|++||++++.  ....+..|...|.+++|+| ++. +|++|+.||.|++||++.....      
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~  228 (408)
T 4a11_B          152 VSTKHCLVAVGTRGPKVQLCDLKSGS--CSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQ  228 (408)
T ss_dssp             SCSSCCEEEEEESSSSEEEEESSSSC--CCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCT
T ss_pred             CCCCCcEEEEEcCCCeEEEEeCCCcc--eeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccc
Confidence            652  489999999999999999887  5667778999999999999 665 7999999999999999874210      


Q ss_pred             ----CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC--------------------
Q 010997          360 ----GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT--------------------  415 (496)
Q Consensus       360 ----~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~--------------------  415 (496)
                          ........+..|...|.+++|+|++.+ |++++.||.|++||+.............                    
T Consensus       229 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          229 HNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             TTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCE
T ss_pred             cccccceeeccccccccCceeEEEEcCCCCE-EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceE
Confidence                001112223678999999999999985 6799999999999998753322111000                    


Q ss_pred             ------------CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          416 ------------TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       416 ------------~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                                  +......+..+.+|...|++++|+|++.+++        +|+.||.|++|++..
T Consensus       308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--------s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELY--------SGSRDCNILAWVPSL  365 (408)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEE--------EEETTSCEEEEEECC
T ss_pred             EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEE--------EECCCCeEEEEeCCC
Confidence                        0012245667789999999999999887654        444569999999984

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.8e-34  Score=284.29  Aligned_cols=284  Identities=19%  Similarity=0.312  Sum_probs=222.0

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec--CCCCceE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--PTEPYVL  212 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~--p~~~~l~  212 (496)
                      ...+|.+.|.+++|+| ++ +|++|+.||+|++||+.++            +....+.+|.. .|.+++|+  +++++|+
T Consensus       157 ~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~l~~~~~~~~~~l~  221 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKG------------CCTHVFEGHNS-TVRCLDIVEYKNIKYIV  221 (464)
T ss_dssp             EECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEEEESSSCEEEE
T ss_pred             EEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEECCCC------------cEEEEECCCCC-ccEEEEEecCCCCCEEE
Confidence            4458999999999998 55 8999999999999999887            56678889987 79999998  4678999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.||+|++||+.+..........      ........           ...........+.+|...|.++.  +++ .
T Consensus       222 s~s~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~--~~~-~  281 (464)
T 3v7d_B          222 TGSRDNTLHVWKLPKESSVPDHGEE------HDYPLVFH-----------TPEENPYFVGVLRGHMASVRTVS--GHG-N  281 (464)
T ss_dssp             EEETTSCEEEEECCCCCCC------------CCSSEEES-----------CGGGCTTEEEEECCCSSCEEEEE--EET-T
T ss_pred             EEcCCCcEEEeeCCCCccccccccc------CCcceEee-----------ccCCCeEEEEEccCccceEEEEc--CCC-C
Confidence            9999999999999865432211110      00000000           00011123456788999998874  555 7


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      ++++++.||.|++||+++++  ....+.+|...|.+++|+| ++.+|++|+.||.|++||+++      +.++..+.+|.
T Consensus       282 ~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h~  352 (464)
T 3v7d_B          282 IVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLEN------GELMYTLQGHT  352 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECCCS
T ss_pred             EEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC------CcEEEEEeCCC
Confidence            89999999999999999877  6677788999999999999 899999999999999999998      78999999999


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      ..|.+++|++  . .|++++.||.|++||+...               ..... ..|...+..++|++++.. +++++  
T Consensus       353 ~~v~~~~~~~--~-~l~s~s~dg~v~vwd~~~~---------------~~~~~-~~~~~~~~~~~~~~~~~~-l~~~~--  410 (464)
T 3v7d_B          353 ALVGLLRLSD--K-FLVSAAADGSIRGWDANDY---------------SRKFS-YHHTNLSAITTFYVSDNI-LVSGS--  410 (464)
T ss_dssp             SCEEEEEECS--S-EEEEEETTSEEEEEETTTC---------------CEEEE-EECTTCCCEEEEEECSSE-EEEEE--
T ss_pred             CcEEEEEEcC--C-EEEEEeCCCcEEEEECCCC---------------ceeee-ecCCCCccEEEEEeCCCE-EEEec--
Confidence            9999999984  3 5789999999999999874               12222 235667888999998765 44333  


Q ss_pred             CCCCCCCCeEEEeecCCCCcCCchHHHHH-HHhccceEEEeccCC
Q 010997          453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAE-LEKFKAHVISCTSKP  496 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~sP  496 (496)
                            ||.|+|||+.      +++.+.+ +..|...|.+++|++
T Consensus       411 ------dg~i~iwd~~------~g~~~~~~~~~~~~~v~~v~~~~  443 (464)
T 3v7d_B          411 ------ENQFNIYNLR------SGKLVHANILKDADQIWSVNFKG  443 (464)
T ss_dssp             ------TTEEEEEETT------TCCEEESCTTTTCSEEEEEEEET
T ss_pred             ------CCeEEEEECC------CCcEEehhhccCCCcEEEEEecC
Confidence                  4999999998      5666654 677899999999863

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.9e-35  Score=285.84  Aligned_cols=262  Identities=11%  Similarity=0.129  Sum_probs=208.8

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  221 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~  221 (496)
                      .+++++|+| ++++|++++.||.|++||+.+.            +....+..| . .+....|+|++++|++|+.||.|+
T Consensus        58 ~~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~------------~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~dg~i~  122 (420)
T 3vl1_A           58 AGKGNTFEK-VGSHLYKARLDGHDFLFNTIIR------------DGSKMLKRA-D-YTAVDTAKLQMRRFILGTTEGDIK  122 (420)
T ss_dssp             CCTTCEEEE-EETTEEEEEETTEEEEEECCSE------------ETTTTSCSC-C-EEEEEEECSSSCEEEEEETTSCEE
T ss_pred             cccceeeee-cCCeEEEEEcCCcEEEEEeccc------------ceeeEEecC-C-ceEEEEEecCCCEEEEEECCCCEE
Confidence            466899999 8889999999999999999876            222334455 2 455668899999999999999999


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      +||+.++..                                        ...+.+|...|.+++|+|++ .+|++++.|+
T Consensus       123 iwd~~~~~~----------------------------------------~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~  161 (420)
T 3vl1_A          123 VLDSNFNLQ----------------------------------------REIDQAHVSEITKLKFFPSG-EALISSSQDM  161 (420)
T ss_dssp             EECTTSCEE----------------------------------------EEETTSSSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             EEeCCCcce----------------------------------------eeecccccCccEEEEECCCC-CEEEEEeCCC
Confidence            999875432                                        24556899999999999998 7999999999


Q ss_pred             eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc---CCCCEEEE
Q 010997          302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---HSAAVLCV  378 (496)
Q Consensus       302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---h~~~i~~l  378 (496)
                      .|++||+++++  ....+.+|...|.+++|+| ++.+|++|+.||.|++||+++      +..+..+..   |...|.++
T Consensus       162 ~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~~~~v~~~  232 (420)
T 3vl1_A          162 QLKIWSVKDGS--NPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGT------GTTIHTFNRKENPHDGVNSI  232 (420)
T ss_dssp             EEEEEETTTCC--CCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTT------TEEEEEECBTTBTTCCEEEE
T ss_pred             eEEEEeCCCCc--CceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCC------CceeEEeecCCCCCCCccEE
Confidence            99999999887  5666778999999999999 899999999999999999998      677777764   34445554


Q ss_pred             ---------------------EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE
Q 010997          379 ---------------------QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  437 (496)
Q Consensus       379 ---------------------~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  437 (496)
                                           +|+|++. +|++|+.||.|++||++...              .......+|...|.+++
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~~v~~~~  297 (420)
T 3vl1_A          233 ALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKE--------------QTIQLPSKFTCSCNSLT  297 (420)
T ss_dssp             EEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCC--------------EEEEECCTTSSCEEEEE
T ss_pred             EEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCc--------------eeEEcccccCCCceeEE
Confidence                                 4577887 46799999999999998741              23333456889999999


Q ss_pred             ecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHh-ccceEEEeccC
Q 010997          438 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKAHVISCTSK  495 (496)
Q Consensus       438 ~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~-h~~~v~~~~~s  495 (496)
                      |+|++..++++++.       ||.|++||+...     ..++..+.+ |...|.++.|+
T Consensus       298 ~~~~~~~~l~~g~~-------dg~i~vwd~~~~-----~~~~~~~~~~~~~~v~~~~~~  344 (420)
T 3vl1_A          298 VDGNNANYIYAGYE-------NGMLAQWDLRSP-----ECPVGEFLINEGTPINNVYFA  344 (420)
T ss_dssp             ECSSCTTEEEEEET-------TSEEEEEETTCT-----TSCSEEEEESTTSCEEEEEEE
T ss_pred             EeCCCCCEEEEEeC-------CCeEEEEEcCCC-----cCchhhhhccCCCCceEEEeC
Confidence            99999866765555       599999999831     233556666 56678877664

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3e-33  Score=275.37  Aligned_cols=264  Identities=20%  Similarity=0.323  Sum_probs=218.4

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE--ecCCCCcceeeeecCCCCceEEecCCCc
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL--TGHQDNAEFALAMCPTEPYVLSGGKDKS  219 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l--~~h~~~~v~~l~~~p~~~~l~sg~~Dg~  219 (496)
                      .++.|+|++ + ++||+|. |++|+|||..++            +....+  .+|.. .|++|+|+|+|++|++|+.||+
T Consensus       107 y~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg------------~~~~~~~~~~~~~-~V~sv~fspdg~~lasgs~Dg~  170 (420)
T 4gga_A          107 YLNLVDWSS-G-NVLAVAL-DNSVYLWSASSG------------DILQLLQMEQPGE-YISSVAWIKEGNYLAVGTSSAE  170 (420)
T ss_dssp             TCBCEEECT-T-SEEEEEE-TTEEEEEETTTC------------CEEEEEECCSTTC-CEEEEEECTTSSEEEEEETTSC
T ss_pred             cceeEEECC-C-CEEEEEe-CCEEEEEECCCC------------CEEEEEEecCCCC-cEEEEEECCCCCEEEEEECCCe
Confidence            468899998 4 4888876 899999999988            444444  45655 6999999999999999999999


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      |+|||++++..                                        +..+.+|...+.++.+++   .++++|+.
T Consensus       171 v~iWd~~~~~~----------------------------------------~~~~~~h~~~v~~~s~~~---~~l~sgs~  207 (420)
T 4gga_A          171 VQLWDVQQQKR----------------------------------------LRNMTSHSARVGSLSWNS---YILSSGSR  207 (420)
T ss_dssp             EEEEETTTTEE----------------------------------------EEEECCCSSCEEEEEEET---TEEEEEET
T ss_pred             EEEEEcCCCcE----------------------------------------EEEEeCCCCceEEEeeCC---CEEEEEeC
Confidence            99999975432                                        367788999999998863   68999999


Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEE
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ  379 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~  379 (496)
                      |+.+++||.+.... ....+.+|...+..+.|+| ++.++++++.|+.|++||.......  ...+.....|...|.+++
T Consensus       208 d~~i~~~d~~~~~~-~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~--~~~~~~~~~~~~~V~~~~  283 (420)
T 4gga_A          208 SGHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVA  283 (420)
T ss_dssp             TSEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSC--SCCSEEECCCSSCEEEEE
T ss_pred             CCceeEeeecccce-eeEEecccccceeeeeecC-CCCeeeeeeccccceEEeecccccc--ceeeeeecccCCceeeee
Confidence            99999999987663 4566779999999999999 9999999999999999999873311  235677888999999999


Q ss_pred             EcCCCCCEEEEE--eCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997          380 WSPDKSSVFGSS--AEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  457 (496)
Q Consensus       380 ~sp~~~~llas~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg  457 (496)
                      |+|.+..+++++  +.|+.|+|||+.+.               .++.....| ..|.++.|+|++..++++      +|+
T Consensus       284 ~~p~~~~~la~~~gs~D~~I~iwd~~t~---------------~~~~~~~~~-~~v~~~~~~~~~~~lv~~------sg~  341 (420)
T 4gga_A          284 WCPWQSNVLATGGGTSDRHIRIWNVCSG---------------ACLSAVDAH-SQVCSILWSPHYKELISG------HGF  341 (420)
T ss_dssp             ECTTCTTEEEEEECTTTCEEEEEETTTT---------------EEEEEEECS-SCEEEEEEETTTTEEEEE------ECT
T ss_pred             eCCCcccEEEEEeecCCCEEEEEeCCcc---------------ccceeeccc-cceeeeeecCCCCeEEEE------Eec
Confidence            999998888764  47999999999885               344444444 568899999998887754      344


Q ss_pred             CCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          458 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       458 ~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .||.|+|||+.      +++++.++.+|.++|++++|+|
T Consensus       342 ~d~~I~iwd~~------~~~~v~~l~gH~~~V~~l~~sp  374 (420)
T 4gga_A          342 AQNQLVIWKYP------TMAKVAELKGHTSRVLSLTMSP  374 (420)
T ss_dssp             TTCCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred             CCCEEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence            57999999998      6788889999999999999998

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.5e-32  Score=256.97  Aligned_cols=251  Identities=18%  Similarity=0.342  Sum_probs=204.6

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .++..+|...|++++|+| ++++||+|+.||+|+|||+.++            +....+.+|.. .+.+  +++++..|+
T Consensus        60 ~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~------------~~~~~~~~h~~-~~~~--~~~~~~~l~  123 (318)
T 4ggc_A           60 LLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQ------------KRLRNMTSHSA-RVGS--LSWNSYILS  123 (318)
T ss_dssp             EEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTT------------EEEEEEECCSS-CEEE--EEEETTEEE
T ss_pred             EEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCc------------eeEEEecCccc-eEEE--eecCCCEEE
Confidence            344457899999999999 8899999999999999999988            66778899987 4444  455678999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +|+.++.+++|+.....                                       ..+..+.+|...+..+.+++++ .
T Consensus       124 s~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~-~  163 (318)
T 4ggc_A          124 SGSRSGHIHHHDVRVAE---------------------------------------HHVATLSGHSQEVCGLRWAPDG-R  163 (318)
T ss_dssp             EEETTSEEEEEETTSSS---------------------------------------CEEEEEECCSSCEEEEEECTTS-S
T ss_pred             EEecCCceEeeecCCCc---------------------------------------eeEEEEcCccCceEEEEEcCCC-C
Confidence            99999999999986432                                       2236678899999999999998 7


Q ss_pred             eEEEEcCCCeEEEEEccCCCcc--ceeeeccCCCCeEEEEecCCCCcEE--EEEcCCCcEEEEeCCCCCCCCCCCCceEe
Q 010997          293 EFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLI--LTGSADNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~i~~sp~~~~~l--~sgs~dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      +|++++.|+.|++||+++++..  .......+...|.+++++|.+..++  ++++.++.|++||.+.      ... ...
T Consensus       164 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~------~~~-~~~  236 (318)
T 4ggc_A          164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS------GAC-LSA  236 (318)
T ss_dssp             EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT------CCE-EEE
T ss_pred             EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc------ccc-ccc
Confidence            8999999999999999886521  2344557888999999999555554  4677889999999987      343 344


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEE-EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGS-SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                      ..+...+..+.|+|++..++++ |+.|+.|+|||+.+.               .++..+.+|.+.|++++|+|++.+++ 
T Consensus       237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~---------------~~~~~l~gH~~~V~~l~~spdg~~l~-  300 (318)
T 4ggc_A          237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM---------------AKVAELKGHTSRVLSLTMSPDGATVA-  300 (318)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCEE-
T ss_pred             ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEcCCCCEEE-
Confidence            5578889999999999876543 347999999999875               56778899999999999999888755 


Q ss_pred             EecCCCCCCCCCCeEEEeecCC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                             |||.||+|+|||+.+
T Consensus       301 -------S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          301 -------SAAADETLRLWRCFE  315 (318)
T ss_dssp             -------EEETTTEEEEECCSC
T ss_pred             -------EEecCCeEEEEECCC
Confidence                   555569999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-33  Score=315.16  Aligned_cols=327  Identities=19%  Similarity=0.285  Sum_probs=251.5

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      ......+|.+.|++++|+| ++++||+|+.||.|+|||+.++            +....+.+|.. .|.+++|+|++++|
T Consensus       607 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~l  672 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETG------------EKLLDIKAHED-EVLCCAFSSDDSYI  672 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEEEECCCSS-CEEEEEECTTSSEE
T ss_pred             ceEEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCC------------CEEEEeccCCC-CEEEEEEecCCCEE
Confidence            3456678999999999999 8899999999999999999988            66778889988 79999999999999


Q ss_pred             EEecCCCcEEEEecCCccccccCCcccc----ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATA----KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  287 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  287 (496)
                      ++|+.||+|++||+.++...........    .................++.+.+|+.........+.+|...|++++|+
T Consensus       673 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s  752 (1249)
T 3sfz_A          673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS  752 (1249)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred             EEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEe
Confidence            9999999999999988754332211100    000000010111112346778889999999999999999999999999


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccc----------------------------------------------------
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPV----------------------------------------------------  315 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------------------------------------------  315 (496)
                      |++ .+|++++.||.|++||++++....                                                    
T Consensus       753 p~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~  831 (1249)
T 3sfz_A          753 PDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGL  831 (1249)
T ss_dssp             SST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCE
T ss_pred             cCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCc
Confidence            998 799999999999999997653100                                                    


Q ss_pred             -eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997          316 -IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED  394 (496)
Q Consensus       316 -~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d  394 (496)
                       .....+|...|.+++|+| ++.++++|+.||.|++||+.+      +..+..+.+|...|.+++|+|++.. |++++.|
T Consensus       832 ~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~------~~~~~~~~~h~~~v~~v~~spdg~~-l~s~s~d  903 (1249)
T 3sfz_A          832 LAEIHTGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDS------RLKVADCRGHLSWVHGVMFSPDGSS-FLTASDD  903 (1249)
T ss_dssp             EEEEECSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTT------TEEEEEECCCSSCEEEEEECTTSSE-EEEEETT
T ss_pred             eeEEcCCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCC------CceeeecCCCccceEEEEECCCCCE-EEEEeCC
Confidence             011126788999999999 999999999999999999998      7888999999999999999999985 6799999


Q ss_pred             CcEEEEECCCCCcccC---------------------------------------------------CCC-------CC-
Q 010997          395 GLLNIWDYEKVGKKVE---------------------------------------------------QGP-------RT-  415 (496)
Q Consensus       395 g~i~iwd~~~~~~~~~---------------------------------------------------~~~-------~~-  415 (496)
                      |.|++||+........                                                   ...       .. 
T Consensus       904 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g  983 (1249)
T 3sfz_A          904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG  983 (1249)
T ss_dssp             SCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTS
T ss_pred             CeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCC
Confidence            9999999753100000                                                   000       00 


Q ss_pred             -----CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEE
Q 010997          416 -----TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVI  490 (496)
Q Consensus       416 -----~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~  490 (496)
                           +......+....+|...|++++|+|++.+++        +++.||.|++|++..      ++.+ .+.+|...|.
T Consensus       984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--------s~~~dg~i~vwd~~~------~~~~-~~~~~~~~v~ 1048 (1249)
T 3sfz_A          984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI--------SSSEDSVIQVWNWQT------GDYV-FLQAHQETVK 1048 (1249)
T ss_dssp             CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE--------EECSSSBEEEEETTT------TEEE-CCBCCSSCEE
T ss_pred             CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEE--------EEcCCCEEEEEECCC------CceE-EEecCCCcEE
Confidence                 0011234455678999999999999988766        555669999999983      3333 3567899999


Q ss_pred             EeccCC
Q 010997          491 SCTSKP  496 (496)
Q Consensus       491 ~~~~sP  496 (496)
                      +++|+|
T Consensus      1049 ~~~~~~ 1054 (1249)
T 3sfz_A         1049 DFRLLQ 1054 (1249)
T ss_dssp             EEEECS
T ss_pred             EEEEcC
Confidence            999886

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-34  Score=300.74  Aligned_cols=262  Identities=19%  Similarity=0.289  Sum_probs=213.7

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC--CCceEE
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT--EPYVLS  213 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~--~~~l~s  213 (496)
                      ..+|.+.|++++|+| ++++||+|+.||.|+|||+...          .......+.+|.+ .|++++|+|+  +++|++
T Consensus         5 l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~----------~~~~~~~l~~h~~-~V~~l~~s~~~~~~~l~s   72 (753)
T 3jro_A            5 ANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGE----------THKLIDTLTGHEG-PVWRVDWAHPKFGTILAS   72 (753)
T ss_dssp             ---CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETT----------EEEEEEEECCCSS-CEEEEEECCTTSCSEEEE
T ss_pred             cccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCC----------CCccceeccCCcC-ceEEEEecCCCCCCEEEE
Confidence            458999999999999 8889999999999999999743          1245667889987 7999999988  899999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--CC
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--SA  291 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~  291 (496)
                      |+.||+|++||+.++..                                      .....+.+|...|.+++|+|+  + 
T Consensus        73 ~s~Dg~I~vwd~~~~~~--------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~-  113 (753)
T 3jro_A           73 CSYDGKVLIWKEENGRW--------------------------------------SQIAVHAVHSASVNSVQWAPHEYG-  113 (753)
T ss_dssp             EETTSCEEEEEEETTEE--------------------------------------EEEEEECCCSSCEEEEEECCGGGC-
T ss_pred             EeCCCeEEEEECCCCcc--------------------------------------cccccccCCCCCeEEEEECCCCCC-
Confidence            99999999999875421                                      123567789999999999998  6 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC------------CCcEEEEEcCCCcEEEEeCCCCCCC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL------------DDNLILTGSADNSVRMFDRRNLTSN  359 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~------------~~~~l~sgs~dg~i~iwd~~~~~~~  359 (496)
                      .++++|+.||.|++||++............|...|.+++|+|.            ++.+|++|+.||.|++||++.... 
T Consensus       114 ~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-  192 (753)
T 3jro_A          114 PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-  192 (753)
T ss_dssp             SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-
T ss_pred             CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-
Confidence            7999999999999999998854455566789999999999994            488999999999999999987321 


Q ss_pred             CCCCCceEeccCCCCEEEEEEcCC---CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997          360 GVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDF  436 (496)
Q Consensus       360 ~~~~~~~~~~~h~~~i~~l~~sp~---~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  436 (496)
                       ...+...+.+|...|++++|+|+   +. +|++++.||.|++||+.......          ...+....+|...|+++
T Consensus       193 -~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s~Dg~I~iwd~~~~~~~~----------~~~~~~~~~~~~~v~~l  260 (753)
T 3jro_A          193 -TYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVSQDRTCIIWTQDNEQGPW----------KKTLLKEEKFPDVLWRA  260 (753)
T ss_dssp             -EEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEESSSCEEEEEESSSSSCC----------BCCBSSSSCCSSCCCCE
T ss_pred             -cceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEecCCEEEEecCCCCCCcc----------eeEEeccCCCCCceEEE
Confidence             01456778899999999999999   66 67899999999999998742111          11223345688899999


Q ss_pred             EecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          437 HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       437 ~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      +|+|++.+++        +|+.||.|+||++..
T Consensus       261 ~~spdg~~l~--------s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          261 SWSLSGNVLA--------LSGGDNKVTLWKENL  285 (753)
T ss_dssp             EECTTTCCEE--------EECSSSCEECCBCCS
T ss_pred             EEcCCCCEEE--------EEcCCCEEEEEecCC
Confidence            9999988766        555679999999973

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=272.18  Aligned_cols=275  Identities=16%  Similarity=0.234  Sum_probs=214.3

Q ss_pred             ceEEEecCCCceeEEEecCCC--CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997          132 KKHKTIIHPGEVNRIRELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  209 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~--~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~  209 (496)
                      ......+|.+.|++++|+|+.  +++||+|+.||.|+|||+.+..          ......+.+|.. .|++++|+|+++
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~~~h~~-~v~~~~~~~~~~   99 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG----------QTIPKAQQMHTG-PVLDVCWSDDGS   99 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS----------CEEEEEEEECSS-CEEEEEECTTSS
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC----------ceeEEEeccccC-CEEEEEECcCCC
Confidence            334456899999999999944  7999999999999999998731          122367888987 799999999999


Q ss_pred             ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE--c
Q 010997          210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF--C  287 (496)
Q Consensus       210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~  287 (496)
                      +|++|+.||.|++||++++..                                         ..+..|...|.+++|  +
T Consensus       100 ~l~s~~~dg~v~iwd~~~~~~-----------------------------------------~~~~~~~~~v~~~~~~~~  138 (368)
T 3mmy_A          100 KVFTASCDKTAKMWDLSSNQA-----------------------------------------IQIAQHDAPVKTIHWIKA  138 (368)
T ss_dssp             EEEEEETTSEEEEEETTTTEE-----------------------------------------EEEEECSSCEEEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEcCCCCc-----------------------------------------eeeccccCceEEEEEEeC
Confidence            999999999999999975432                                         335679999999999  7


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      |++ .+|++++.||.|++||+++++  ....+..+ ..+.++.+.+   ..+++++.++.+.+||++...     .....
T Consensus       139 ~~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~-----~~~~~  206 (368)
T 3mmy_A          139 PNY-SCVMTGSWDKTLKFWDTRSSN--PMMVLQLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQP-----SEFRR  206 (368)
T ss_dssp             SSC-EEEEEEETTSEEEEECSSCSS--CSEEEECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSC-----EEEEE
T ss_pred             CCC-CEEEEccCCCcEEEEECCCCc--EEEEEecC-CCceEEEecC---CeeEEEeCCCcEEEEEecccc-----chhhh
Confidence            887 789999999999999999887  44555444 4677777764   578888899999999998732     11222


Q ss_pred             e-ccCCCCEEEEEEcCCCCC---EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC------------
Q 010997          368 F-EGHSAAVLCVQWSPDKSS---VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD------------  431 (496)
Q Consensus       368 ~-~~h~~~i~~l~~sp~~~~---llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------  431 (496)
                      + ..+...+.++++.++...   .+++++.||.|++||+.....            ...+..+.+|..            
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  274 (368)
T 3mmy_A          207 IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP------------AKDNFTFKCHRSNGTNTSAPQDIY  274 (368)
T ss_dssp             CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH------------HHHSEEEECSEEC----CCCEEEC
T ss_pred             ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc------------cccceeeeeeeccccccccccccc
Confidence            2 234456677777665543   267999999999999987421            123444555554            


Q ss_pred             CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .|++++|+|++.+++        +|+.||.|+|||+.      .++++.++.+|..+|.+++|+|
T Consensus       275 ~v~~~~~sp~~~~l~--------s~~~dg~i~iwd~~------~~~~~~~~~~~~~~v~~~~~s~  325 (368)
T 3mmy_A          275 AVNGIAFHPVHGTLA--------TVGSDGRFSFWDKD------ARTKLKTSEQLDQPISACCFNH  325 (368)
T ss_dssp             CEEEEEECTTTCCEE--------EEETTSCEEEEETT------TTEEEEECCCCSSCEEEEEECT
T ss_pred             ceEEEEEecCCCEEE--------EEccCCeEEEEECC------CCcEEEEecCCCCCceEEEECC
Confidence            799999999887765        45556999999999      6777888899999999999998

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-33  Score=296.78  Aligned_cols=329  Identities=13%  Similarity=0.081  Sum_probs=217.8

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ....|.+.|++++|+|  +++||+++.|++|+|||+.++            +....+. |.. .|++++|+|++++|++|
T Consensus        53 ~~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~------------~~~~~~~-~~~-~V~~v~~sp~g~~l~sg  116 (902)
T 2oaj_A           53 IKLEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQ------------KVLTTVF-VPG-KITSIDTDASLDWMLIG  116 (902)
T ss_dssp             EECSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTC------------SEEEEEE-CSS-CEEEEECCTTCSEEEEE
T ss_pred             EEcCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCC------------cEEEEEc-CCC-CEEEEEECCCCCEEEEE
Confidence            4456889999999999  459999999999999999887            4555665 444 69999999999999999


Q ss_pred             cCCCcEEEEecCCccccccCC-c-----cccccCCCCCceecc--------CCCCCCCCCCCCCCCCcCCeeeeecC---
Q 010997          215 GKDKSVVLWSIQDHITSSATD-P-----ATAKSAGSSGSIIKQ--------SPKPGDGNDKAADGPSVGPRGIYNGH---  277 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~h---  277 (496)
                      +.||+|++||+++........ .     .......+....+.+        .....++.+ +|+......+..+..|   
T Consensus       117 s~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~  195 (902)
T 2oaj_A          117 LQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP  195 (902)
T ss_dssp             ETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT
T ss_pred             cCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCC
Confidence            999999999998765320000 0     000001111111111        112345667 8888887777777655   


Q ss_pred             ---------------CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeee---cc-------------CCCCe
Q 010997          278 ---------------EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---KA-------------HDADL  326 (496)
Q Consensus       278 ---------------~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~-------------~~~~v  326 (496)
                                     ...|++++|+|++ .+|++|+.||+|++||+++++....+.+   ..             |...|
T Consensus       196 g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V  274 (902)
T 2oaj_A          196 FAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKI  274 (902)
T ss_dssp             TCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEE
T ss_pred             cCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCe
Confidence                           5789999999998 7999999999999999976431000000   00             01112


Q ss_pred             EEEE----------------------------------------------------------------------------
Q 010997          327 HCVD----------------------------------------------------------------------------  330 (496)
Q Consensus       327 ~~i~----------------------------------------------------------------------------  330 (496)
                      ++++                                                                            
T Consensus       275 ~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  354 (902)
T 2oaj_A          275 SKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQ  354 (902)
T ss_dssp             EEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSS
T ss_pred             eEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCC
Confidence            2222                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 010997          331 --------------------------------------------------------------------------------  330 (496)
Q Consensus       331 --------------------------------------------------------------------------------  330 (496)
                                                                                                      
T Consensus       355 sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~  434 (902)
T 2oaj_A          355 SPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGG  434 (902)
T ss_dssp             CSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCS
T ss_pred             CCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCC
Confidence                                                                                            


Q ss_pred             --------ecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE--ec-----cCCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997          331 --------WNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK--FE-----GHSAAVLCVQWSPDKSSVFGSSAEDG  395 (496)
Q Consensus       331 --------~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~--~~-----~h~~~i~~l~~sp~~~~llas~~~dg  395 (496)
                              |+| ++++||+|+.|++|++||+......  ......  +.     +|...|.+|+|+|+++ +||+|+.||
T Consensus       435 ~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~--~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~Dg  510 (902)
T 2oaj_A          435 VRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQ--DNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIETG  510 (902)
T ss_dssp             BCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTT--TTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEETTS
T ss_pred             cCCCCcccccc-cCcEEEEecCCCcEEEEECCCcccc--CCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEecCc
Confidence                    234 4567777777777777777652100  000111  11     7889999999999999 578999999


Q ss_pred             cEEEEECCCCCccc--------C--CCC-----------------CCC---CCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997          396 LLNIWDYEKVGKKV--------E--QGP-----------------RTT---NYPAGLFFQHAGHRDKVVDFHWNASDPWT  445 (496)
Q Consensus       396 ~i~iwd~~~~~~~~--------~--~~~-----------------~~~---~~~~~~~~~~~~h~~~V~~~~~~p~~~~l  445 (496)
                      +|+|||+.......        .  ...                 ...   ....+++..+.+|.+.|++++|+|+|  +
T Consensus       511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG--~  588 (902)
T 2oaj_A          511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG--F  588 (902)
T ss_dssp             CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS--E
T ss_pred             EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc--E
Confidence            99999998641100        0  000                 000   00013466788999999999999988  5


Q ss_pred             EEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH-hccceEEEeccC
Q 010997          446 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSK  495 (496)
Q Consensus       446 ~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~s  495 (496)
                      +|+++.       |++|+|||+.......... +..+. +|.+.|++|+|+
T Consensus       589 lAsgs~-------D~tv~lwd~~~~~~~~~~~-~~~~~~gh~~~V~sv~Fs  631 (902)
T 2oaj_A          589 VGIAYA-------AGSLMLIDRRGPAIIYMEN-IREISGAQSACVTCIEFV  631 (902)
T ss_dssp             EEEEET-------TSEEEEEETTTTEEEEEEE-GGGTCSSCCCCEEEEEEE
T ss_pred             EEEEeC-------CCcEEEEECCCCeEEEEee-hhHhccccccceEEEEEE
Confidence            665555       4999999987421100011 24565 999999999998

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.7e-32  Score=268.42  Aligned_cols=257  Identities=18%  Similarity=0.317  Sum_probs=206.4

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEe
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSG  214 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg  214 (496)
                      ..+|.+.|++++|+|.++.+||+|+.||.|+|||+.+.....     ....+...+.+|.. .|.+++|+|++ ++|++|
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~-----~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~  150 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL-----PLREPVITLEGHTK-RVGIVAWHPTAQNVLLSA  150 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS-----CBCSCSEEEECCSS-CEEEEEECSSBTTEEEEE
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc-----ccCCceEEecCCCC-eEEEEEECcCCCCEEEEE
Confidence            458999999999999778899999999999999998763221     11246678899988 79999999998 699999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee--ecCCCceeEEEEccCCCc
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY--NGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~  292 (496)
                      +.||.|++||+.++..                                        +..+  ..|...|.+++|+|++ .
T Consensus       151 ~~dg~i~iwd~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~-~  189 (402)
T 2aq5_A          151 GCDNVILVWDVGTGAA----------------------------------------VLTLGPDVHPDTIYSVDWSRDG-A  189 (402)
T ss_dssp             ETTSCEEEEETTTTEE----------------------------------------EEEECTTTCCSCEEEEEECTTS-S
T ss_pred             cCCCEEEEEECCCCCc----------------------------------------cEEEecCCCCCceEEEEECCCC-C
Confidence            9999999999975432                                        2455  6799999999999998 7


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeee-ccCCCC-eEEEEecCCCCcEEEEE---cCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVE-KAHDAD-LHCVDWNPLDDNLILTG---SADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~-v~~i~~sp~~~~~l~sg---s~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      +|++++.||.|++||+++++  ....+ ..|... +.+++|+| ++.+|++|   +.|+.|++||+++..     .++..
T Consensus       190 ~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~-----~~~~~  261 (402)
T 2aq5_A          190 LICTSCRDKRVRVIEPRKGT--VVAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLE-----EPLSL  261 (402)
T ss_dssp             CEEEEETTSEEEEEETTTTE--EEEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCS-----SCSEE
T ss_pred             EEEEEecCCcEEEEeCCCCc--eeeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCcccc-----CCceE
Confidence            89999999999999999877  45555 577765 89999999 89999999   899999999999832     22333


Q ss_pred             ec-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997          368 FE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       368 ~~-~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~  446 (496)
                      .. .|...|.+++|+|++..++++|+.||.|++||+.....           ....+..+. |...|.+++|+|++..++
T Consensus       262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~-----------~~~~l~~~~-~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP-----------FLHYLSMFS-SKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT-----------CEEEEEEEC-CSSCCSEEEECCGGGSCG
T ss_pred             EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc-----------ceEeecccc-cCCcccceEEecccccce
Confidence            32 57788999999999997766777899999999987411           012333333 678999999999887644


Q ss_pred             EEecCCCCCCCCCCeEEEeecCC
Q 010997          447 VSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                              +  .|+.+++|++..
T Consensus       330 --------s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          330 --------N--KCEIARFYKLHE  342 (402)
T ss_dssp             --------G--GTEEEEEEEEET
T ss_pred             --------e--cceeEEEEEcCC
Confidence                    2  246999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-32  Score=256.24  Aligned_cols=261  Identities=19%  Similarity=0.238  Sum_probs=213.5

Q ss_pred             CCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 010997           96 SVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN  175 (496)
Q Consensus        96 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~  175 (496)
                      +.+..+.+|+....                     ........|.+.|.+++|+| ++.+|++|+.||.|++|++.... 
T Consensus        36 ~~dg~v~vw~~~~~---------------------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~-   92 (313)
T 3odt_A           36 SRDGTVRLWSKDDQ---------------------WLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATS-   92 (313)
T ss_dssp             ETTSEEEEEEESSS---------------------EEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCT-
T ss_pred             EcCCcEEEEECCCC---------------------EEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecC-
Confidence            36778999886321                     12334567899999999999 88999999999999999998752 


Q ss_pred             ccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCC
Q 010997          176 RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP  255 (496)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (496)
                              ..++...+.+|.. .|.+++|  ++++|++|+.||.|++||...                            
T Consensus        93 --------~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d~~~----------------------------  133 (313)
T 3odt_A           93 --------GEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWKEGS----------------------------  133 (313)
T ss_dssp             --------TSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEETTE----------------------------
T ss_pred             --------CCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEcCCc----------------------------
Confidence                    2245667888987 6899999  577999999999999999221                            


Q ss_pred             CCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc-CCCCeEEEEecCC
Q 010997          256 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPL  334 (496)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~  334 (496)
                                    ....+..|...|.+++|+|..+.++++++.||.|++||...    ....+.. |...|.+++|+| 
T Consensus       134 --------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~~~-  194 (313)
T 3odt_A          134 --------------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----VIKTFSGIHNDVVRHLAVVD-  194 (313)
T ss_dssp             --------------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE----EEEEECSSCSSCEEEEEEEE-
T ss_pred             --------------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc----eEEEEeccCcccEEEEEEcC-
Confidence                          12567789999999999994448999999999999999332    3344444 899999999999 


Q ss_pred             CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCC
Q 010997          335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  414 (496)
Q Consensus       335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~  414 (496)
                      ++. +++++.||.|++||+++      +.++..+.+|...|.+++|+|++.  |++++.||.|++||+...         
T Consensus       195 ~~~-~~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~~~~~~~~~~--l~~~~~dg~v~iwd~~~~---------  256 (313)
T 3odt_A          195 DGH-FISCSNDGLIKLVDMHT------GDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRIWSKENG---------  256 (313)
T ss_dssp             TTE-EEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEECTTSC--EEEEETTSEEEEECTTTC---------
T ss_pred             CCe-EEEccCCCeEEEEECCc------hhhhhhhhcCCceEEEEEEecCCC--EEEEecCCEEEEEECCCC---------
Confidence            666 99999999999999998      788999999999999999999994  568999999999999874         


Q ss_pred             CCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          415 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       415 ~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                            ..+..+..|...|.+++|+|++. ++ +++       .||.|++|++...
T Consensus       257 ------~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~-------~dg~i~iw~~~~~  297 (313)
T 3odt_A          257 ------SLKQVITLPAISIWSVDCMSNGD-II-VGS-------SDNLVRIFSQEKS  297 (313)
T ss_dssp             ------CEEEEEECSSSCEEEEEECTTSC-EE-EEE-------TTSCEEEEESCGG
T ss_pred             ------ceeEEEeccCceEEEEEEccCCC-EE-EEe-------CCCcEEEEeCCCC
Confidence                  45666788999999999999886 44 344       3599999999843

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6e-33  Score=274.55  Aligned_cols=278  Identities=20%  Similarity=0.354  Sum_probs=216.8

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~  215 (496)
                      ..+|...|.++.+   ++++|++|+.||.|++||+.++            +....+.+|.. .|.+++|  ++++|++|+
T Consensus       129 ~~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~------------~~~~~~~~h~~-~v~~l~~--~~~~l~sg~  190 (435)
T 1p22_A          129 RSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTG-SVLCLQY--DERVIITGS  190 (435)
T ss_dssp             CCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSC------------CEEEEECCCSS-CEEEEEC--CSSEEEEEE
T ss_pred             ccCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCC------------eEEEEEcCCCC-cEEEEEE--CCCEEEEEc
Confidence            3467788999987   6789999999999999999887            66778899988 6899999  788999999


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCcee-----ccCCCCCCCCCCCCCCCCcCCe---eeeecCCCceeEEEEc
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSII-----KQSPKPGDGNDKAADGPSVGPR---GIYNGHEDTVEDVTFC  287 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~l~~~  287 (496)
                      .||+|++||+.++.........     ......+     .......++.+.+|+.......   ..+.+|...|.+++| 
T Consensus       191 ~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-  264 (435)
T 1p22_A          191 SDSTVRVWDVNTGEMLNTLIHH-----CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-  264 (435)
T ss_dssp             TTSCEEEEESSSCCEEEEECCC-----CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred             CCCeEEEEECCCCcEEEEEcCC-----CCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence            9999999999887543322211     0111111     1111234567778877766655   677899999999999 


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                       ++ .++++|+.||.|++||+++++  ....+..|...|.+++|+   +.++++|+.||.|++||+++      +.++..
T Consensus       265 -~~-~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~------~~~~~~  331 (435)
T 1p22_A          265 -DD-KYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIEC------GACLRV  331 (435)
T ss_dssp             -ET-TEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEE
T ss_pred             -CC-CEEEEEeCCCeEEEEECCcCc--EEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCC------CCEEEE
Confidence             44 689999999999999999887  677778999999999995   57999999999999999998      788999


Q ss_pred             eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                      +.+|...|.+++|  ++. .|++|+.||.|++||+.........      .....+..+.+|...|.+++|  ++..++ 
T Consensus       332 ~~~h~~~v~~~~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~------~~~~~~~~~~~h~~~v~~l~~--~~~~l~-  399 (435)
T 1p22_A          332 LEGHEELVRCIRF--DNK-RIVSGAYDGKIKVWDLVAALDPRAP------AGTLCLRTLVEHSGRVFRLQF--DEFQIV-  399 (435)
T ss_dssp             ECCCSSCEEEEEC--CSS-EEEEEETTSCEEEEEHHHHTSTTSC------TTTTEEEEECCCSSCCCCEEE--CSSCEE-
T ss_pred             EeCCcCcEEEEEe--cCC-EEEEEeCCCcEEEEECCCCCCcccc------ccchheeeccCCCCCeEEEEe--CCCEEE-
Confidence            9999999999999  455 5789999999999999764211110      111267778899999999999  455554 


Q ss_pred             EecCCCCCCCCCCeEEEeecCC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                             +|+.||+|++||+.+
T Consensus       400 -------s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          400 -------SSSHDDTILIWDFLN  414 (435)
T ss_dssp             -------ECCSSSEEEEEC---
T ss_pred             -------EEeCCCEEEEEECCC
Confidence                   566679999999983

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.5e-33  Score=275.18  Aligned_cols=292  Identities=18%  Similarity=0.306  Sum_probs=232.7

Q ss_pred             EEEecCCCce-eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          134 HKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       134 ~~~~~h~~~V-~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      ....+|.+.| .++.+   ++++||+|+.||.|++||+.++            +....+.+|.. .|++++|+  +++|+
T Consensus       112 ~~l~~h~~~v~~~~~~---~g~~l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~--~~~l~  173 (445)
T 2ovr_B          112 KVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTG------------KCLRTLVGHTG-GVWSSQMR--DNIII  173 (445)
T ss_dssp             EEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTTC------------CEEEECCCCSS-CEEEEEEE--TTEEE
T ss_pred             EEecccCCCcEEEEEE---cCCEEEEEECCCcEEEEECCCC------------cEEEEEcCCCC-CEEEEEec--CCEEE
Confidence            3456899875 55554   5789999999999999999887            56678889988 68999997  56999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceec-----cCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK-----QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  287 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  287 (496)
                      +|+.||+|++||+.++.........     ......+.     ......++.+.+|+......+..+.+|...|.+++| 
T Consensus       174 s~~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-  247 (445)
T 2ovr_B          174 SGSTDRTLKVWNAETGECIHTLYGH-----TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-  247 (445)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred             EEeCCCeEEEEECCcCcEEEEECCC-----CCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence            9999999999999877543322211     01111010     111234677888888888889999999999999999 


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                       ++ .++++|+.||.|++||++++.  ....+..|...|.+++|   ++.++++|+.||.|++||+++      +..+..
T Consensus       248 -~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~------~~~~~~  314 (445)
T 2ovr_B          248 -DG-RRVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET------GNCIHT  314 (445)
T ss_dssp             -CS-SCEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT------CCEEEE
T ss_pred             -CC-CEEEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCC------CCEEEE
Confidence             44 689999999999999999877  66777789999999999   578999999999999999998      788999


Q ss_pred             eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC---CCCCcceEEecCCCCc
Q 010997          368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---HRDKVVDFHWNASDPW  444 (496)
Q Consensus       368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~~~~~p~~~~  444 (496)
                      +.+|...+.++.+++  . +|++|+.||.|++||+...               ..+..+.+   |...|++++|++  . 
T Consensus       315 ~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~--~-  373 (445)
T 2ovr_B          315 LTGHQSLTSGMELKD--N-ILVSGNADSTVKIWDIKTG---------------QCLQTLQGPNKHQSAVTCLQFNK--N-  373 (445)
T ss_dssp             ECCCCSCEEEEEEET--T-EEEEEETTSCEEEEETTTC---------------CEEEEECSTTSCSSCEEEEEECS--S-
T ss_pred             EcCCcccEEEEEEeC--C-EEEEEeCCCeEEEEECCCC---------------cEEEEEccCCCCCCCEEEEEECC--C-
Confidence            999999999998864  3 5789999999999999874               33444444   888999999974  3 


Q ss_pred             EEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH-----HhccceEEEeccCC
Q 010997          445 TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-----EKFKAHVISCTSKP  496 (496)
Q Consensus       445 l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-----~~h~~~v~~~~~sP  496 (496)
                      ++++++.       ||.|++||+.      +++.+..+     .+|.+.|.+++|+|
T Consensus       374 ~l~s~~~-------dg~v~iwd~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~  417 (445)
T 2ovr_B          374 FVITSSD-------DGTVKLWDLK------TGEFIRNLVTLESGGSGGVVWRIRASN  417 (445)
T ss_dssp             EEEEEET-------TSEEEEEETT------TCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             EEEEEeC-------CCeEEEEECC------CCceeeeeeccccCCCCceEEEEEecC
Confidence            5665444       5999999998      45555555     57889999999997

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.6e-32  Score=256.84  Aligned_cols=263  Identities=20%  Similarity=0.333  Sum_probs=214.0

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe--cCCCCcceeeeecCCCCceEEecCCCcE
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYVLSGGKDKSV  220 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~--~h~~~~v~~l~~~p~~~~l~sg~~Dg~i  220 (496)
                      .++|+|++ ++ +||+|. |++|+|||+.++            +....+.  +|.. .|++++|+|++++|++|+.||+|
T Consensus        28 ~~~l~WS~-~~-~lAvg~-D~tV~iWd~~tg------------~~~~~~~~~~~~~-~V~~v~~~~~~~~l~sgs~Dg~v   91 (318)
T 4ggc_A           28 LNLVDWSS-GN-VLAVAL-DNSVYLWSASSG------------DILQLLQMEQPGE-YISSVAWIKEGNYLAVGTSSAEV   91 (318)
T ss_dssp             CBCEEECT-TS-EEEEEE-TTEEEEEETTTC------------CEEEEEECCSTTC-CEEEEEECTTSSEEEEEETTSEE
T ss_pred             ceEEEECC-CC-EEEEEe-CCEEEEEECCCC------------CEEEEEEecCCCC-eEEEEEECCCCCEEEEEECCCcE
Confidence            57899998 54 787765 899999999988            4444454  5555 69999999999999999999999


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  300 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  300 (496)
                      ++||+++++.                                        +..+.+|...+.++.+.  + .++++++.+
T Consensus        92 ~iw~~~~~~~----------------------------------------~~~~~~h~~~~~~~~~~--~-~~l~s~~~~  128 (318)
T 4ggc_A           92 QLWDVQQQKR----------------------------------------LRNMTSHSARVGSLSWN--S-YILSSGSRS  128 (318)
T ss_dssp             EEEETTTTEE----------------------------------------EEEEECCSSCEEEEEEE--T-TEEEEEETT
T ss_pred             EEeecCCcee----------------------------------------EEEecCccceEEEeecC--C-CEEEEEecC
Confidence            9999976432                                        36778899888877665  3 689999999


Q ss_pred             CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEE
Q 010997          301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW  380 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~  380 (496)
                      +.+++|+...... ....+.+|...+.++.+++ ++.+|++++.||.|++||+++....  .........|.+.|.++++
T Consensus       129 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~  204 (318)
T 4ggc_A          129 GHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAW  204 (318)
T ss_dssp             SEEEEEETTSSSC-EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTB--SCCSEEECCCCSCEEEEEE
T ss_pred             CceEeeecCCCce-eEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCccc--ccceeeecccCCceEEEEe
Confidence            9999999987763 4556678999999999999 8999999999999999999873211  2345566778899999999


Q ss_pred             cCCCCCEE--EEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCC
Q 010997          381 SPDKSSVF--GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG  458 (496)
Q Consensus       381 sp~~~~ll--as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~  458 (496)
                      +|++..++  ++++.++.|++||....                .......|...+..+.|+|.+..++++      +|+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~i~lwd~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~------sg~~  262 (318)
T 4ggc_A          205 CPWQSNVLATGGGTSDRHIRIWNVCSG----------------ACLSAVDAHSQVCSILWSPHYKELISG------HGFA  262 (318)
T ss_dssp             CTTSTTEEEEEECTTTCEEEEEETTTC----------------CEEEEEECSSCEEEEEEETTTTEEEEE------ECTT
T ss_pred             cCCCCcEEEEEecCCCCEEEEEecccc----------------cccccccceeeeeeeeecccccceEEE------EEcC
Confidence            99988765  45667899999998874                122234567789999999998887754      3455


Q ss_pred             CCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          459 GGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       459 Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      |+.|+|||+.      +++++.++.+|.+.|++++|+|
T Consensus       263 d~~i~iwd~~------~~~~~~~l~gH~~~V~~l~~sp  294 (318)
T 4ggc_A          263 QNQLVIWKYP------TMAKVAELKGHTSRVLSLTMSP  294 (318)
T ss_dssp             TCCEEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred             CCEEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence            7999999998      6788889999999999999998

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.4e-33  Score=275.51  Aligned_cols=245  Identities=22%  Similarity=0.373  Sum_probs=206.9

Q ss_pred             ceEEEecCCCce-eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          132 KKHKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       132 ~~~~~~~h~~~V-~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      ......+|.+.| .++.+   ++++|++|+.||.|++||+.++            +....+.+|.+ .|++++|+|++ +
T Consensus       113 ~~~~l~~h~~~v~~~~~~---~~~~l~sgs~dg~i~vwd~~~~------------~~~~~~~~h~~-~V~~l~~~~~~-~  175 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINK------------KFLLQLSGHDG-GVWALKYAHGG-I  175 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE---ETTEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECSTT-E
T ss_pred             ceEEEcCCCCCcEEEEEE---CCCEEEEEcCCCcEEEEECCCC------------cEEEEEeCCCc-CEEEEEEcCCC-E
Confidence            344667898885 66666   4569999999999999999887            66778899998 79999999988 8


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc--
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP--  288 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--  288 (496)
                      |++|+.||+|++||++++..                                        +..+.+|...|.+++|++  
T Consensus       176 l~s~s~dg~i~vwd~~~~~~----------------------------------------~~~~~~h~~~v~~l~~~~~~  215 (464)
T 3v7d_B          176 LVSGSTDRTVRVWDIKKGCC----------------------------------------THVFEGHNSTVRCLDIVEYK  215 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEE----------------------------------------EEEECCCSSCEEEEEEEESS
T ss_pred             EEEEeCCCCEEEEECCCCcE----------------------------------------EEEECCCCCccEEEEEecCC
Confidence            99999999999999975432                                        366778999999999995  


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCCcc---------------------ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGTSP---------------------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNS  347 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~  347 (496)
                      ++ .++++|+.||.|++||+++....                     ......+|...|.++.  + ++.+|++|+.||.
T Consensus       216 ~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~  291 (464)
T 3v7d_B          216 NI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNT  291 (464)
T ss_dssp             SC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSC
T ss_pred             CC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCe
Confidence            44 78999999999999999876522                     1345667888888884  4 6789999999999


Q ss_pred             EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997          348 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  427 (496)
Q Consensus       348 i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (496)
                      |++||+++      +.++..+.+|...|.+++|+|++.. +++|+.||.|++||+.+.               ..+..+.
T Consensus       292 i~vwd~~~------~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~dg~i~vwd~~~~---------------~~~~~~~  349 (464)
T 3v7d_B          292 LIVWDVAQ------MKCLYILSGHTDRIYSTIYDHERKR-CISASMDTTIRIWDLENG---------------ELMYTLQ  349 (464)
T ss_dssp             EEEEETTT------TEEEEEECCCSSCEEEEEEETTTTE-EEEEETTSCEEEEETTTT---------------EEEEEEC
T ss_pred             EEEEECCC------CcEEEEecCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC---------------cEEEEEe
Confidence            99999998      7889999999999999999999985 679999999999999874               5677888


Q ss_pred             CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      +|...|.+++|++  . .+++++.       ||.|++||+..
T Consensus       350 ~h~~~v~~~~~~~--~-~l~s~s~-------dg~v~vwd~~~  381 (464)
T 3v7d_B          350 GHTALVGLLRLSD--K-FLVSAAA-------DGSIRGWDAND  381 (464)
T ss_dssp             CCSSCEEEEEECS--S-EEEEEET-------TSEEEEEETTT
T ss_pred             CCCCcEEEEEEcC--C-EEEEEeC-------CCcEEEEECCC
Confidence            9999999999984  3 5565444       59999999984

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.2e-34  Score=269.10  Aligned_cols=243  Identities=23%  Similarity=0.300  Sum_probs=186.0

Q ss_pred             EEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcC
Q 010997          190 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVG  269 (496)
Q Consensus       190 ~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (496)
                      .+.+|.+ .|++++|+|++++|++|+.|++|+|||+.++..                                      .
T Consensus         8 ~~~~H~~-~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~--------------------------------------~   48 (316)
T 3bg1_A            8 VDTSHED-MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ--------------------------------------I   48 (316)
T ss_dssp             ------C-CEEEEEECGGGCEEEEEETTTEEEEEEEETTEE--------------------------------------E
T ss_pred             ecccccC-eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc--------------------------------------E
Confidence            5678988 799999999999999999999999999875321                                      1


Q ss_pred             CeeeeecCCCceeEEEEccC-CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC--CcEEEEEcCCC
Q 010997          270 PRGIYNGHEDTVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSADN  346 (496)
Q Consensus       270 ~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~dg  346 (496)
                      .+..+.+|.+.|.+++|++. .+.+|++|+.|++|++||++++.......+.+|...|++++|+| +  +.+|++|+.||
T Consensus        49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~g~~lasgs~D~  127 (316)
T 3bg1_A           49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAP-HDYGLILACGSSDG  127 (316)
T ss_dssp             EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECC-TTTCSCEEEECSSS
T ss_pred             EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECC-CCCCcEEEEEcCCC
Confidence            23568899999999999753 23789999999999999998875334556778999999999999 5  78999999999


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC----------------CCEEEEEeCCCcEEEEECCCCCcccC
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK----------------SSVFGSSAEDGLLNIWDYEKVGKKVE  410 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~----------------~~llas~~~dg~i~iwd~~~~~~~~~  410 (496)
                      .|++||++....   ......+.+|...|.+++|+|+.                ..+||+|+.|+.|++||+...+    
T Consensus       128 ~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----  200 (316)
T 3bg1_A          128 AISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG----  200 (316)
T ss_dssp             CEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS----
T ss_pred             CEEEEecCCCCC---cceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC----
Confidence            999999986210   11245567899999999999973                1257899999999999986521    


Q ss_pred             CCCCCCCCCCeeEEEecCCCCCcceEEecCCC---CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccc
Q 010997          411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD---PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  487 (496)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~---~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~  487 (496)
                              ....+..+.+|...|.+++|+|++   ..+++|++.|       ++|+||++......  ......+..|.+
T Consensus       201 --------~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D-------~~v~iw~~~~~~~~--~~~~~~~~~~~~  263 (316)
T 3bg1_A          201 --------QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD-------GRVFIWTCDDASSN--TWSPKLLHKFND  263 (316)
T ss_dssp             --------CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT-------CEEEEEECSSTTCC--CCBCCEEEECSS
T ss_pred             --------ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC-------CeEEEEEccCcccc--chhhhhhhcCCC
Confidence                    113456678999999999999986   3567766655       99999999742110  001223467889


Q ss_pred             eEEEeccCC
Q 010997          488 HVISCTSKP  496 (496)
Q Consensus       488 ~v~~~~~sP  496 (496)
                      .|.+++|+|
T Consensus       264 ~v~~v~~sp  272 (316)
T 3bg1_A          264 VVWHVSWSI  272 (316)
T ss_dssp             CEEEEEECT
T ss_pred             cEEEEEEcC
Confidence            999999998

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-33  Score=275.25  Aligned_cols=327  Identities=11%  Similarity=0.124  Sum_probs=218.5

Q ss_pred             ccccCChhHhHhhhhCcCCCCcceEeccC-CcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCc
Q 010997           46 HWKSLVPVLYDWLANHNLVWPSLSCRWGP-QLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNE  124 (496)
Q Consensus        46 ~w~~~~~~ly~~~~~~~~~wps~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~  124 (496)
                      .|+.....+..+...|.-  +..++.|.| +        ...|+.     ++.+..+.||++.....             
T Consensus        47 ~w~~~g~~~~~~~~~h~~--~V~~~~~s~~~--------~~~l~s-----~s~dg~v~vwd~~~~~~-------------   98 (437)
T 3gre_A           47 MGNLRGKLIATLMENEPN--SITSSAVSPGE--------TPYLIT-----GSDQGVIKIWNLKEIIV-------------   98 (437)
T ss_dssp             GGGCCCCEEEEECTTTTS--CEEEEEEECSS--------SCEEEE-----EETTSEEEEEEHHHHHT-------------
T ss_pred             cccccceEEeeeccCCCC--ceEEEEECCCC--------CCEEEE-----ecCCceEEEeECccccc-------------
Confidence            477665555444344433  556777777 3        123333     34678999998642100             


Q ss_pred             ccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCC---CCCCccccCCCCCCCCceEEecC---CCCc
Q 010997          125 EARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE---AQPNRHAVLGATNSRPDLILTGH---QDNA  198 (496)
Q Consensus       125 ~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~l~~h---~~~~  198 (496)
                        .. ..+.....+|.+.|++++|+| ++.+|++|+.||.|++||+.   .+.......    ...+..+..+   ....
T Consensus        99 --~~-~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~  170 (437)
T 3gre_A           99 --GE-VYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN----CECIRKINLKNFGKNEY  170 (437)
T ss_dssp             --TC-CCSCSEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEE----EEEEEEEEGGGGSSCCC
T ss_pred             --Cc-ccceeeeccCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccc----cceeEEEEccCcccccC
Confidence              00 111223447999999999999 88999999999999999995   331110000    0111122211   1224


Q ss_pred             ceeee--ecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997          199 EFALA--MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  276 (496)
Q Consensus       199 v~~l~--~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (496)
                      +.++.  +++++.+|++|+.||.|++||++++..                                        +..+.+
T Consensus       171 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------------------------------~~~~~~  210 (437)
T 3gre_A          171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER----------------------------------------LQIIEN  210 (437)
T ss_dssp             EEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE----------------------------------------EEEEEC
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee----------------------------------------eEEEcc
Confidence            55666  567899999999999999999975432                                        355666


Q ss_pred             --CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec-cCCCCeEEEEecCC---CCcEEEEEcCCCcEEE
Q 010997          277 --HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPL---DDNLILTGSADNSVRM  350 (496)
Q Consensus       277 --h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~sp~---~~~~l~sgs~dg~i~i  350 (496)
                        |...|++++|+|++ .+|++|+.||.|++||++.+.  ....+. .|...|.+++|+|.   ++.+|++|+.||.|++
T Consensus       211 ~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i  287 (437)
T 3gre_A          211 SPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNV--LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI  287 (437)
T ss_dssp             CGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE--EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred             CCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCcc--EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence              88999999999998 799999999999999999876  445443 78889999966651   5779999999999999


Q ss_pred             EeCCCCCCCCCCCCceEecc--------------------------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          351 FDRRNLTSNGVGSPINKFEG--------------------------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~~~~~--------------------------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ||+++      +..+..+.+                          |...|++++|+ ++. +|++|+.|+.|++||+..
T Consensus       288 wd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          288 WNFVK------GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             EETTT------TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTEEEEEETTC
T ss_pred             EEcCC------CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCeEEEEECCC
Confidence            99997      454444443                          56678889999 555 578999999999999987


Q ss_pred             CCcccCCCCCCC----------------------CCCCeeEEEecCCCCCcceEEecCC-CCcEEEEecCCCCCCCCCCe
Q 010997          405 VGKKVEQGPRTT----------------------NYPAGLFFQHAGHRDKVVDFHWNAS-DPWTVVSVSDDCDSTGGGGT  461 (496)
Q Consensus       405 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~h~~~V~~~~~~p~-~~~l~~s~s~d~~sgg~Dg~  461 (496)
                      ............                      ............|...|++++|+++ +..+++|++.       ||.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~-------dG~  432 (437)
T 3gre_A          360 LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN-------SGL  432 (437)
T ss_dssp             GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET-------TSC
T ss_pred             cccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC-------Cce
Confidence            532221110000                      0000001112348999999999997 3456776555       499


Q ss_pred             EEEee
Q 010997          462 LQIWR  466 (496)
Q Consensus       462 i~iw~  466 (496)
                      |+||+
T Consensus       433 I~iw~  437 (437)
T 3gre_A          433 IGIFQ  437 (437)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99995

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-32  Score=284.29  Aligned_cols=304  Identities=17%  Similarity=0.283  Sum_probs=234.3

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCc-ceeeeecC--CCCceEEe
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA-EFALAMCP--TEPYVLSG  214 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~-v~~l~~~p--~~~~l~sg  214 (496)
                      .|.+.|++++|+| ++++||+++ ++.|+|||+.++..        ..+....+.+|.. . |++++|+|  ++++|++|
T Consensus        16 ~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~--------~~~~~~~~~~h~~-~~v~~~~~sp~~~~~~l~s~   84 (615)
T 1pgu_A           16 TQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDS--------KVPPVVQFTGHGS-SVVTTVKFSPIKGSQYLCSG   84 (615)
T ss_dssp             CCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCC--------SSCSEEEECTTTT-SCEEEEEECSSTTCCEEEEE
T ss_pred             CccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCC--------ccccceEEecCCC-ceEEEEEECcCCCCCEEEEe
Confidence            6889999999999 888999988 78999999986511        1145678899988 6 99999999  99999999


Q ss_pred             cCCCcEEEEecCCc--------cccccCCc----cccccCCCCCceeccCC--CCCCCCCCCCCCCCcCCeeeeecCCCc
Q 010997          215 GKDKSVVLWSIQDH--------ITSSATDP----ATAKSAGSSGSIIKQSP--KPGDGNDKAADGPSVGPRGIYNGHEDT  280 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~  280 (496)
                      +.||.|++||+.++        ........    ............+....  ....+.+.+|+  ....+..+.+|...
T Consensus        85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~  162 (615)
T 1pgu_A           85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQR  162 (615)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSC
T ss_pred             cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCcc
Confidence            99999999999644        11111100    00000011111111111  11124455565  45567888899999


Q ss_pred             eeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCC---CeEEEEecCCC-CcEEEEEcCCCcEEEEeCCCC
Q 010997          281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA---DLHCVDWNPLD-DNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~i~~sp~~-~~~l~sgs~dg~i~iwd~~~~  356 (496)
                      |.+++|+|+++.++++++.|+.|++||+++.+  ....+..|..   .|.+++|+| + +.+|++++.||.|++||+++ 
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~-  238 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKS-  238 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTT-
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCC-
Confidence            99999999995589999999999999998876  5667778988   999999999 7 99999999999999999998 


Q ss_pred             CCCCCCCCceEe-c---cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC---
Q 010997          357 TSNGVGSPINKF-E---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH---  429 (496)
Q Consensus       357 ~~~~~~~~~~~~-~---~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h---  429 (496)
                           +..+..+ .   .|...|.+++|+ ++. +|++++.|+.|++||+...               ..+..+..+   
T Consensus       239 -----~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~---------------~~~~~~~~~~~~  296 (615)
T 1pgu_A          239 -----GEFLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTS---------------KCVQKWTLDKQQ  296 (615)
T ss_dssp             -----CCEEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTT---------------EEEEEEECCTTC
T ss_pred             -----CCEeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCC---------------cEEEEEcCCCCc
Confidence                 7888888 6   899999999999 777 5679999999999999874               344445554   


Q ss_pred             -CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          430 -RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       430 -~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                       ...+.++.|. ++..+ ++       |+.||.|++|++.      .++.+..+.+|.+.|.+++| |
T Consensus       297 ~~~~~~~~~~~-~~~~l-~~-------~~~~g~i~~~d~~------~~~~~~~~~~~~~~v~~~~~-~  348 (615)
T 1pgu_A          297 LGNQQVGVVAT-GNGRI-IS-------LSLDGTLNFYELG------HDEVLKTISGHNKGITALTV-N  348 (615)
T ss_dssp             GGGCEEEEEEE-ETTEE-EE-------EETTSCEEEEETT------EEEEEEEECCCSSCEEEEET-T
T ss_pred             ccCceeEEEeC-CCCeE-EE-------EECCCCEEEEECC------CCcEEEEEeCCCCCEEEEEe-c
Confidence             3567888886 55554 44       4445999999998      56777788899999999998 6

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6e-33  Score=286.66  Aligned_cols=305  Identities=14%  Similarity=0.143  Sum_probs=221.0

Q ss_pred             EEecCCC---ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE-e---cCCCCcceeeeecCC
Q 010997          135 KTIIHPG---EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-T---GHQDNAEFALAMCPT  207 (496)
Q Consensus       135 ~~~~h~~---~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l-~---~h~~~~v~~l~~~p~  207 (496)
                      ...+|.+   .|++++|+|+++++|++++.||.|++||+.++            +....+ .   +|.. .|.+++|+ +
T Consensus       198 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~-~v~~~~~~-~  263 (615)
T 1pgu_A          198 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------------EFLKYIEDDQEPVQG-GIFALSWL-D  263 (615)
T ss_dssp             EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------------CEEEECCBTTBCCCS-CEEEEEES-S
T ss_pred             eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC------------CEeEEecccccccCC-ceEEEEEc-C
Confidence            4456888   99999999932899999999999999999887            555666 5   7776 79999999 9


Q ss_pred             CCceEEecCCCcEEEEecCCccccccCCccccccCCC-------CCceeccCCCCCCCCCCCCCCCCcCCeeeeec----
Q 010997          208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGS-------SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG----  276 (496)
Q Consensus       208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  276 (496)
                      +.+|++++.||.|++||+.++................       ....+.  .....+.+.+|+.....++..+.+    
T Consensus       264 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~g~i~~~d~~~~~~~~~~~~~~~~  341 (615)
T 1pgu_A          264 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII--SLSLDGTLNFYELGHDEVLKTISGHNKG  341 (615)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE--EEETTSCEEEEETTEEEEEEEECCCSSC
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE--EEECCCCEEEEECCCCcEEEEEeCCCCC
Confidence            9999999999999999998764432221110000000       000000  011233444444444444444444    


Q ss_pred             -----------------------------CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC---------------
Q 010997          277 -----------------------------HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT---------------  312 (496)
Q Consensus       277 -----------------------------h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------  312 (496)
                                                   |...|.+++| +.+ ..+++++.|+.|++||++...               
T Consensus       342 v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~  419 (615)
T 1pgu_A          342 ITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF  419 (615)
T ss_dssp             EEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSE
T ss_pred             EEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCC-cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCC
Confidence                                         5555555556 334 578888888888888876421               


Q ss_pred             -----------------ccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCCc-eEeccCCC
Q 010997          313 -----------------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPI-NKFEGHSA  373 (496)
Q Consensus       313 -----------------~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~-~~~~~h~~  373 (496)
                                       ......+ .|...+.+++|+   +.+|++++. ||.|++||+..      +... ..+..|..
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~------~~~~~~~~~~~~~  489 (615)
T 1pgu_A          420 TAVLTNDDDLLILQSFTGDIIKSV-RLNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSD------LEVSFDLKTPLRA  489 (615)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEEC---SSEEEEEETTTSCEEEEETTE------EEEEEECSSCCSS
T ss_pred             EEEEeCCCceEEEeccCCceeeec-ccCCCceEEEEc---CCEEEEeecCCCeEEEEECCC------ccccccccCCccC
Confidence                             0012222 467889999997   689999999 99999999997      3333 67788999


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecC----------CC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNA----------SD  442 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p----------~~  442 (496)
                      .|.+++|+|++. +|++++.||.|++||+...               ..+..+.+ |...|++++|+|          ++
T Consensus       490 ~v~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~  553 (615)
T 1pgu_A          490 KPSYISISPSET-YIAAGDVMGKILLYDLQSR---------------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEE  553 (615)
T ss_dssp             CEEEEEECTTSS-EEEEEETTSCEEEEETTTT---------------EEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred             ceEEEEECCCCC-EEEEcCCCCeEEEeeCCCC---------------cceeEeecCCCCceeEEEEcCccccccccccCC
Confidence            999999999998 4679999999999999874               45556677 999999999999          77


Q ss_pred             CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          443 PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       443 ~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .+ +++       |+.||.|+||++..     ..+.+..+.+|...|.+++|+|
T Consensus       554 ~~-l~~-------~~~dg~i~iw~~~~-----~~~~~~~~~~h~~~v~~l~~s~  594 (615)
T 1pgu_A          554 DL-VAT-------GSLDTNIFIYSVKR-----PMKIIKALNAHKDGVNNLLWET  594 (615)
T ss_dssp             CE-EEE-------EETTSCEEEEESSC-----TTCCEEETTSSTTCEEEEEEEE
T ss_pred             CE-EEE-------EcCCCcEEEEECCC-----CceechhhhcCccceEEEEEcC
Confidence            65 454       44459999999983     1266777899999999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-31  Score=286.46  Aligned_cols=285  Identities=20%  Similarity=0.316  Sum_probs=231.4

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      +..++.|.|+        ...|+.|.     .+..+.||+...                     ........+|.+.|++
T Consensus        15 ~v~~i~~sp~--------~~~la~~~-----~~g~v~iwd~~~---------------------~~~~~~~~~~~~~v~~   60 (814)
T 3mkq_A           15 RVKGIDFHPT--------EPWVLTTL-----YSGRVEIWNYET---------------------QVEVRSIQVTETPVRA   60 (814)
T ss_dssp             CEEEEEECSS--------SSEEEEEE-----TTSEEEEEETTT---------------------TEEEEEEECCSSCEEE
T ss_pred             ceEEEEECCC--------CCEEEEEe-----CCCEEEEEECCC---------------------CceEEEEecCCCcEEE
Confidence            4557778775        13454443     456888887421                     0122344579999999


Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI  225 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~  225 (496)
                      ++|+| ++++||+|+.||.|+|||+.++            +....+.+|.+ .|++++|+|++++|++|+.||.|++||+
T Consensus        61 ~~~s~-~~~~l~~~~~dg~i~vw~~~~~------------~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           61 GKFIA-RKNWIIVGSDDFRIRVFNYNTG------------EKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             EEEEG-GGTEEEEEETTSEEEEEETTTC------------CEEEEEECCSS-CEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred             EEEeC-CCCEEEEEeCCCeEEEEECCCC------------cEEEEEecCCC-CEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence            99999 8899999999999999999887            66678889987 6999999999999999999999999999


Q ss_pred             CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc-CCCceEEEEcCCCeEE
Q 010997          226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP-SSAQEFCSVGDDSCLI  304 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~  304 (496)
                      .++.                                       .....+.+|...|.+++|+| ++ ..|++++.||.|+
T Consensus       127 ~~~~---------------------------------------~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~  166 (814)
T 3mkq_A          127 ENNW---------------------------------------ALEQTFEGHEHFVMCVAFNPKDP-STFASGCLDRTVK  166 (814)
T ss_dssp             GGTS---------------------------------------EEEEEEECCSSCEEEEEEETTEE-EEEEEEETTSEEE
T ss_pred             CCCc---------------------------------------eEEEEEcCCCCcEEEEEEEcCCC-CEEEEEeCCCeEE
Confidence            7531                                       12356778999999999999 55 7999999999999


Q ss_pred             EEEccCCCccceeeeccCCCCeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC
Q 010997          305 LWDARVGTSPVIKVEKAHDADLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD  383 (496)
Q Consensus       305 iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~  383 (496)
                      +||++.+.. .......+...+.+++|+|. ++.+|++|+.||.|++||+++      +..+..+.+|...|.+++|+|+
T Consensus       167 vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~  239 (814)
T 3mkq_A          167 VWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPT  239 (814)
T ss_dssp             EEETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSS
T ss_pred             EEECCCCcc-eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC------CcEEEEEcCCCCCEEEEEEcCC
Confidence            999988763 23333345589999999983 578999999999999999998      7888999999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE-EEEecCCCCCCCCCCeE
Q 010997          384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT-VVSVSDDCDSTGGGGTL  462 (496)
Q Consensus       384 ~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l-~~s~s~d~~sgg~Dg~i  462 (496)
                      +. +|++++.||.|++||+...               ..+..+..|...|.+++|+|++..+ +++++        |+.+
T Consensus       240 ~~-~l~~~~~dg~v~vwd~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~  295 (814)
T 3mkq_A          240 LP-IIISGSEDGTLKIWNSSTY---------------KVEKTLNVGLERSWCIATHPTGRKNYIASGF--------DNGF  295 (814)
T ss_dssp             SS-EEEEEETTSCEEEEETTTC---------------SEEEEECCSSSSEEEEEECTTCGGGEEEEEE--------TTEE
T ss_pred             CC-EEEEEeCCCeEEEEECCCC---------------cEEEEeecCCCcEEEEEEccCCCceEEEEEe--------CCCE
Confidence            98 5679999999999999874               4566778888999999999998765 44333        3678


Q ss_pred             EEeecCC
Q 010997          463 QIWRMSD  469 (496)
Q Consensus       463 ~iw~~~~  469 (496)
                      .+|++..
T Consensus       296 ~~~~~~~  302 (814)
T 3mkq_A          296 TVLSLGN  302 (814)
T ss_dssp             EEEECSC
T ss_pred             EEEEcCC
Confidence            8888753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.3e-33  Score=313.08  Aligned_cols=310  Identities=18%  Similarity=0.253  Sum_probs=240.5

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      .+|.+.|.+++|+| ++.++++++.||.|++||+.+.            .....+.+|.. .|.+++|+|++++|++++.
T Consensus       837 ~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~------------~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~  902 (1249)
T 3sfz_A          837 TGHHSTIQYCDFSP-YDHLAVIALSQYCVELWNIDSR------------LKVADCRGHLS-WVHGVMFSPDGSSFLTASD  902 (1249)
T ss_dssp             CSSSSCCCEEEECS-STTEEEEECSSSCEEEEETTTT------------EEEEEECCCSS-CEEEEEECTTSSEEEEEET
T ss_pred             CCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC------------ceeeecCCCcc-ceEEEEECCCCCEEEEEeC
Confidence            38999999999999 8899999999999999999887            56678889988 6999999999999999999


Q ss_pred             CCcEEEEecCCccccccCCcc--------------------------------ccccCCCCCceeccC-------CCCCC
Q 010997          217 DKSVVLWSIQDHITSSATDPA--------------------------------TAKSAGSSGSIIKQS-------PKPGD  257 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~-------~~~~~  257 (496)
                      ||+|++||+.+..........                                ...............       .....
T Consensus       903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~  982 (1249)
T 3sfz_A          903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED  982 (1249)
T ss_dssp             TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence            999999997643111000000                                000000000111111       12345


Q ss_pred             CCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc
Q 010997          258 GNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN  337 (496)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  337 (496)
                      +.+.+|+.........+.+|...|.+++|+|++ .++++++.||.|++||+.++.  . .....|...|.+++|+| + .
T Consensus       983 g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~--~-~~~~~~~~~v~~~~~~~-~-~ 1056 (1249)
T 3sfz_A          983 GAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGD--Y-VFLQAHQETVKDFRLLQ-D-S 1056 (1249)
T ss_dssp             SCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTE--E-ECCBCCSSCEEEEEECS-S-S
T ss_pred             CCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCc--e-EEEecCCCcEEEEEEcC-C-C
Confidence            677888888888888999999999999999998 789999999999999999876  2 34458999999999998 4 4


Q ss_pred             EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCC
Q 010997          338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTN  417 (496)
Q Consensus       338 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~  417 (496)
                      .+++++.||.|++||+.+      +..+..+.+|...|.+++|+|++.. |++++.|+.|++||+...            
T Consensus      1057 ~l~~~~~dg~v~vwd~~~------~~~~~~~~~~~~~v~~~~~s~d~~~-l~s~s~d~~v~iwd~~~~------------ 1117 (1249)
T 3sfz_A         1057 RLLSWSFDGTVKVWNVIT------GRIERDFTCHQGTVLSCAISSDATK-FSSTSADKTAKIWSFDLL------------ 1117 (1249)
T ss_dssp             EEEEEESSSEEEEEETTT------TCCCEEEECCSSCCCCEEECSSSSS-CEEECCSSCCCEECSSSS------------
T ss_pred             cEEEEECCCcEEEEECCC------CceeEEEcccCCcEEEEEECCCCCE-EEEEcCCCcEEEEECCCc------------
Confidence            678899999999999998      7889999999999999999999996 579999999999999874            


Q ss_pred             CCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCc---hHHHHHHHhccceEEEecc
Q 010997          418 YPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ---DEVLAELEKFKAHVISCTS  494 (496)
Q Consensus       418 ~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~---~~~~~~l~~h~~~v~~~~~  494 (496)
                         ..+..+.+|...|++++|+|++.+++        +|+.||.|++||+........   ........+|.+.|.+++|
T Consensus      1118 ---~~~~~l~~h~~~v~~~~~s~dg~~la--------t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f 1186 (1249)
T 3sfz_A         1118 ---SPLHELKGHNGCVRCSAFSLDGILLA--------TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186 (1249)
T ss_dssp             ---SCSBCCCCCSSCEEEEEECSSSSEEE--------EEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEE
T ss_pred             ---ceeeeeccCCCcEEEEEECCCCCEEE--------EEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEE
Confidence               23344678999999999999887654        444569999999984221110   1112334789999999999


Q ss_pred             CC
Q 010997          495 KP  496 (496)
Q Consensus       495 sP  496 (496)
                      +|
T Consensus      1187 s~ 1188 (1249)
T 3sfz_A         1187 SP 1188 (1249)
T ss_dssp             CT
T ss_pred             CC
Confidence            97

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-32  Score=268.49  Aligned_cols=291  Identities=12%  Similarity=0.067  Sum_probs=206.6

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC---CccccCCCCC---------------------------------
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP---NRHAVLGATN---------------------------------  184 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~---~~~~~~~~~~---------------------------------  184 (496)
                      .++.+++|+| ++++|+++ .++.|++||+.++.   ..........                                 
T Consensus         5 ~p~~~v~~s~-dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSR-DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECS-SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecC-CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            4689999999 77777666 46799999998875   1111000000                                 


Q ss_pred             ---------CCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEecC--CccccccCCccccccCCCCCceeccC
Q 010997          185 ---------SRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQ--DHITSSATDPATAKSAGSSGSIIKQS  252 (496)
Q Consensus       185 ---------~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (496)
                               ..+.....+|.+ .|++++|+|++++| ++|+.||.|++||+.  ++.                       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-----------------------  138 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYS-YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-----------------------  138 (450)
T ss_dssp             -----------------CCCC-CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-----------------------
T ss_pred             cccccCccccCCCCCCCccCC-ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-----------------------
Confidence                     001112234554 69999999999986 899999999999997  332                       


Q ss_pred             CCCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc--ceeeeccCCCCeEE
Q 010997          253 PKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDADLHC  328 (496)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~  328 (496)
                                       .+..+.  .|...|.+++|+|++ .+|++|+.||.|++|++......  ....+.+|...|++
T Consensus       139 -----------------~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~  200 (450)
T 2vdu_B          139 -----------------VLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTD  200 (450)
T ss_dssp             -----------------CEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEE
T ss_pred             -----------------eeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEE
Confidence                             124443  567899999999998 78999999999999999887632  22356689999999


Q ss_pred             EEecCCC---CcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE-eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          329 VDWNPLD---DNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       329 i~~sp~~---~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ++|+| +   +.+|++|+.|+.|++||+++      +..+.. +.+|...|.+++|+ ++. +|++++.|+.|+|||+..
T Consensus       201 ~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~------~~~~~~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~  271 (450)
T 2vdu_B          201 VHLIK-DSDGHQFIITSDRDEHIKISHYPQ------CFIVDKWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKT  271 (450)
T ss_dssp             EEEEE-CTTSCEEEEEEETTSCEEEEEESC------TTCEEEECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTT
T ss_pred             EEEcC-CCCCCcEEEEEcCCCcEEEEECCC------CceeeeeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCC
Confidence            99999 8   88999999999999999998      677776 56899999999999 887 567999999999999987


Q ss_pred             CCcccCCCCCC--------CCCCCee--EEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC
Q 010997          405 VGKKVEQGPRT--------TNYPAGL--FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  474 (496)
Q Consensus       405 ~~~~~~~~~~~--------~~~~~~~--~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~  474 (496)
                      ...........        ...++..  ......+...|.+++|+|++.++++++..       |+.|+||++.+.    
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~-------d~~i~iw~~~~~----  340 (450)
T 2vdu_B          272 GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA-------TKCIIILEMSEK----  340 (450)
T ss_dssp             CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETT-------CSEEEEEEECSS----
T ss_pred             CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECC-------CCeEEEEEeccC----
Confidence            42111000000        0000000  00000234578999999988877754433       599999999211    


Q ss_pred             ch---HHHHHHHhccceEEEeccCC
Q 010997          475 QD---EVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       475 ~~---~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .+   ..+..+..| +.|.+++|+|
T Consensus       341 ~~~~l~~~~~~~~~-~~v~~~~~~~  364 (450)
T 2vdu_B          341 QKGDLALKQIITFP-YNVISLSAHN  364 (450)
T ss_dssp             STTCEEEEEEEECS-SCEEEEEEET
T ss_pred             CCCceeeccEeccC-CceEEEEecC
Confidence            23   556667777 8899999987

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.4e-31  Score=264.25  Aligned_cols=253  Identities=18%  Similarity=0.353  Sum_probs=201.7

Q ss_pred             eEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997          189 LILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  267 (496)
Q Consensus       189 ~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (496)
                      ....+|.+ .|++++|+|+ +.+|++|+.||.|++||+.+......                              ....
T Consensus       122 ~~~~~h~~-~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------------------------------~~~~  170 (430)
T 2xyi_A          122 EIKINHEG-EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------------------------------PSGE  170 (430)
T ss_dssp             EEEEEESS-CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------------------------------TTCC
T ss_pred             EEEEcCCC-cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------------------------------cccc
Confidence            34567877 6999999997 67999999999999999975321100                              0012


Q ss_pred             cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc-----ceeeeccCCCCeEEEEecCCCCcEEEEE
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-----VIKVEKAHDADLHCVDWNPLDDNLILTG  342 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~v~~i~~sp~~~~~l~sg  342 (496)
                      ..+...+.+|...|.+++|+|++..+|++|+.||.|++||++.....     ....+..|...|.+++|+|.++.+|+++
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~  250 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV  250 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence            34457788999999999999998559999999999999999874321     1345568999999999999778899999


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCee
Q 010997          343 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  422 (496)
Q Consensus       343 s~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  422 (496)
                      +.||.|++||++....   ..++..+..|...|++++|+|++.++|++|+.||.|++||++...              ..
T Consensus       251 ~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--------------~~  313 (430)
T 2xyi_A          251 ADDQKLMIWDTRNNNT---SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK--------------LK  313 (430)
T ss_dssp             ETTSEEEEEETTCSCS---SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------------SC
T ss_pred             eCCCeEEEEECCCCCC---CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--------------CC
Confidence            9999999999997321   257778889999999999999999888999999999999998742              23


Q ss_pred             EEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCc--------hHHHHHHHhccceEEEecc
Q 010997          423 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQ--------DEVLAELEKFKAHVISCTS  494 (496)
Q Consensus       423 ~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~--------~~~~~~l~~h~~~v~~~~~  494 (496)
                      +..+.+|...|.+++|+|++..++++++.|       |.|+|||+........        .+.+..+.+|...|.+++|
T Consensus       314 ~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  386 (430)
T 2xyi_A          314 LHSFESHKDEIFQVQWSPHNETILASSGTD-------RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW  386 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETT-------SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEE
T ss_pred             eEEeecCCCCEEEEEECCCCCCEEEEEeCC-------CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEE
Confidence            455678999999999999998888866655       9999999984211100        1445566788999999999


Q ss_pred             CC
Q 010997          495 KP  496 (496)
Q Consensus       495 sP  496 (496)
                      +|
T Consensus       387 ~p  388 (430)
T 2xyi_A          387 NP  388 (430)
T ss_dssp             CS
T ss_pred             CC
Confidence            97

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.7e-31  Score=262.41  Aligned_cols=328  Identities=14%  Similarity=0.210  Sum_probs=216.5

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCC-----
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHP-----  140 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----  140 (496)
                      +..++.|.|+        ...|+.|     +.+..+.||+........          ..............+|.     
T Consensus        30 ~V~~v~~s~~--------g~~la~g-----~~dg~v~iw~~~~~~~~~----------~~~~~~~~~~~~~~~h~~~~~~   86 (447)
T 3dw8_B           30 IISTVEFNHS--------GELLATG-----DKGGRVVIFQQEQENKIQ----------SHSRGEYNVYSTFQSHEPEFDY   86 (447)
T ss_dssp             SEEEEEECSS--------SSEEEEE-----ETTSEEEEEEECC---------------CCCCCCEEEEEEEECCCCEEEG
T ss_pred             cEEEEEECCC--------CCEEEEE-----cCCCeEEEEEecCCCCCC----------cccccceeEecccccccccccc
Confidence            5567888774        1344443     367889999876422100          00001111233455788     


Q ss_pred             -------CceeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCCccc---cCC----------CCCC-------------
Q 010997          141 -------GEVNRIRELPQNT--KIVATHTDSPDVLIWDVEAQPNRHA---VLG----------ATNS-------------  185 (496)
Q Consensus       141 -------~~V~~l~~~p~~~--~~lat~~~dg~i~iwd~~~~~~~~~---~~~----------~~~~-------------  185 (496)
                             +.|++++|+| ++  .+|++++.||.|++||+........   ...          ....             
T Consensus        87 ~~~~~~~~~V~~l~~~~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  165 (447)
T 3dw8_B           87 LKSLEIEEKINKIRWLP-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE  165 (447)
T ss_dssp             GGTEEECCCCCEEEECC-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE
T ss_pred             cccccccCceEEEEEcC-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee
Confidence                   8899999999 55  7899999999999999876421100   000          0000             


Q ss_pred             -CCceE-EecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCC
Q 010997          186 -RPDLI-LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA  263 (496)
Q Consensus       186 -~~~~~-l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (496)
                       .+... ..+|.. .|++++|+|++++|++| .||.|++||++..........                           
T Consensus       166 ~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~---------------------------  216 (447)
T 3dw8_B          166 ASPRRIFANAHTY-HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVD---------------------------  216 (447)
T ss_dssp             EEEEEEECSCCSS-CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEE---------------------------
T ss_pred             ccceEEeccCCCc-ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeee---------------------------
Confidence             00112 357877 79999999999999999 799999999984221100000                           


Q ss_pred             CCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc--ceeeeccCCC------------CeEEE
Q 010997          264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP--VIKVEKAHDA------------DLHCV  329 (496)
Q Consensus       264 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~------------~v~~i  329 (496)
                          .. ...+.+|...|.+++|+|+++.+|++|+.||.|++||++++...  ....+..|..            .|.++
T Consensus       217 ----~~-~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  291 (447)
T 3dw8_B          217 ----IK-PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDV  291 (447)
T ss_dssp             ----CC-CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEE
T ss_pred             ----cc-cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEE
Confidence                00 01356799999999999998679999999999999999987721  1455666765            89999


Q ss_pred             EecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC---------------EEEEEEcCCCCCEEEEEeCC
Q 010997          330 DWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA---------------VLCVQWSPDKSSVFGSSAED  394 (496)
Q Consensus       330 ~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~---------------i~~l~~sp~~~~llas~~~d  394 (496)
                      +|+| ++.+|++++. +.|++||+++.     +.++..+.+|...               +..++|+|++.+ |++|+.|
T Consensus       292 ~~s~-~g~~l~~~~~-~~v~iwd~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~d  363 (447)
T 3dw8_B          292 KFSH-SGRYMMTRDY-LSVKVWDLNME-----NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYN  363 (447)
T ss_dssp             EECT-TSSEEEEEES-SEEEEEETTCC-----SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECST
T ss_pred             EECC-CCCEEEEeeC-CeEEEEeCCCC-----ccccceeeccccccccccccccccccccceEEEECCCCCE-EEEeccC
Confidence            9999 9999999999 99999999863     3677778777542               335999999995 5799999


Q ss_pred             CcEEEEECCCCCcccCCCCCCC-----CCC------------CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997          395 GLLNIWDYEKVGKKVEQGPRTT-----NYP------------AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  457 (496)
Q Consensus       395 g~i~iwd~~~~~~~~~~~~~~~-----~~~------------~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg  457 (496)
                      |.|+|||+..............     ..+            .........+...|..++|+|++..++ +++.      
T Consensus       364 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la-~~~~------  436 (447)
T 3dw8_B          364 NFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIA-VATT------  436 (447)
T ss_dssp             TEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEE-EECS------
T ss_pred             CEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEE-EEec------
Confidence            9999999987432110000000     000            001111224456799999999887654 4333      


Q ss_pred             CCCeEEEeecC
Q 010997          458 GGGTLQIWRMS  468 (496)
Q Consensus       458 ~Dg~i~iw~~~  468 (496)
                        +.+++|.-.
T Consensus       437 --~~~~~~~~~  445 (447)
T 3dw8_B          437 --NNLYIFQDK  445 (447)
T ss_dssp             --SCEEEEECC
T ss_pred             --ceeeeeccc
Confidence              358888754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-32  Score=258.05  Aligned_cols=238  Identities=11%  Similarity=0.078  Sum_probs=178.6

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      ++.+||+|+.||.|++||+.++            +....+.  .. .|.++.|+|+   +++|+.|++|++|+.......
T Consensus        47 d~~~l~sg~~Dg~v~iwd~~~~------------~~~~~~~--~~-~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~  108 (343)
T 3lrv_A           47 DKWVCMCRCEDGALHFTQLKDS------------KTITTIT--TP-NPRTGGEHPA---IISRGPCNRLLLLYPGNQITI  108 (343)
T ss_dssp             EEEEEEEEEETTEEEEEEESSS------------SCEEEEE--EE-CCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCC------------cEEEEEe--cC-CceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence            7789999999999999999887            4444554  23 5889999998   999999999999998743211


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee-ecCCCceeEEEEcc--CCCceEEEEcCCCeEEEEEc
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCP--SSAQEFCSVGDDSCLILWDA  308 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~~~~l~s~~~dg~i~iwd~  308 (496)
                                                     ++......+..+ .+|...|.+++|+|  ++ .+|++++.||+|++||+
T Consensus       109 -------------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~  156 (343)
T 3lrv_A          109 -------------------------------LDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSY  156 (343)
T ss_dssp             -------------------------------EETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEES
T ss_pred             -------------------------------eecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEEC
Confidence                                           111122222333 36778999999999  88 79999999999999999


Q ss_pred             cCCCccceeee-ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc-eEecc-CCCCEEEEEEcCCCC
Q 010997          309 RVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEG-HSAAVLCVQWSPDKS  385 (496)
Q Consensus       309 ~~~~~~~~~~~-~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~~~~~-h~~~i~~l~~sp~~~  385 (496)
                      ++++  ..... ..|...|++++|+| ++.+|++|+.||.|++||+++      +..+ ..+.. |..+|++++|+|++.
T Consensus       157 ~~~~--~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~~~h~~~v~~l~fs~~g~  227 (343)
T 3lrv_A          157 EDDS--QYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSS------PDQASSRFPVDEEAKIKEVKFADNGY  227 (343)
T ss_dssp             SSSC--EEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSC------TTSCCEECCCCTTSCEEEEEECTTSS
T ss_pred             CCCc--EEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCC------CCCCccEEeccCCCCEEEEEEeCCCC
Confidence            9887  33333 34566899999999 999999999999999999998      5666 77888 999999999999998


Q ss_pred             CEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc--eEEecCCCCcEEEEecCCCCCCCCCCeEE
Q 010997          386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV--DFHWNASDPWTVVSVSDDCDSTGGGGTLQ  463 (496)
Q Consensus       386 ~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~  463 (496)
                      + |++++ |+.|++||++......            .+..+..|...+.  +++|+|++.++++.++.       |+.|+
T Consensus       228 ~-l~s~~-~~~v~iwd~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~-------d~~i~  286 (343)
T 3lrv_A          228 W-MVVEC-DQTVVCFDLRKDVGTL------------AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE-------SNSLT  286 (343)
T ss_dssp             E-EEEEE-SSBEEEEETTSSTTCB------------SSCCCBC-----CCEEEEECTTSSEEEEEETT-------TTEEE
T ss_pred             E-EEEEe-CCeEEEEEcCCCCcce------------eecccccccccccceEEEECCCCCEEEEecCC-------CCcEE
Confidence            5 56888 5599999998852211            1111223444444  59999998876632221       58999


Q ss_pred             EeecCC
Q 010997          464 IWRMSD  469 (496)
Q Consensus       464 iw~~~~  469 (496)
                      ||++..
T Consensus       287 v~~~~~  292 (343)
T 3lrv_A          287 IYKFDK  292 (343)
T ss_dssp             EEEECT
T ss_pred             EEEEcc
Confidence            999963

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-30  Score=249.06  Aligned_cols=293  Identities=13%  Similarity=0.064  Sum_probs=218.3

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      +..++.|.|.        ...|+.+     +.+..+.||++....+                  ........+|.+.|++
T Consensus        13 ~v~~~~~s~~--------~~~l~~~-----~~d~~v~iw~~~~~~~------------------~~~~~~~~~~~~~v~~   61 (342)
T 1yfq_A           13 YISDIKIIPS--------KSLLLIT-----SWDGSLTVYKFDIQAK------------------NVDLLQSLRYKHPLLC   61 (342)
T ss_dssp             CEEEEEEEGG--------GTEEEEE-----ETTSEEEEEEEETTTT------------------EEEEEEEEECSSCEEE
T ss_pred             cEEEEEEcCC--------CCEEEEE-----cCCCeEEEEEeCCCCc------------------cccceeeeecCCceEE
Confidence            4457777774        1244444     2567899998753211                  1123455689999999


Q ss_pred             EEecCCCCc-EEEEEeCCCcEEEEeC-CCCCCccccCCCCCCCCceEEec--CCCCcceeeeecCCCCceEEecCCCcEE
Q 010997          146 IRELPQNTK-IVATHTDSPDVLIWDV-EAQPNRHAVLGATNSRPDLILTG--HQDNAEFALAMCPTEPYVLSGGKDKSVV  221 (496)
Q Consensus       146 l~~~p~~~~-~lat~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~l~~--h~~~~v~~l~~~p~~~~l~sg~~Dg~i~  221 (496)
                      ++|+| +++ +|++|+.||.|++||+ .+..             ...+.+  |.. .|.+++|+| +++|++|+.|+.|+
T Consensus        62 ~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~-------------~~~~~~~~~~~-~v~~l~~~~-~~~l~s~~~d~~i~  125 (342)
T 1yfq_A           62 CNFID-NTDLQIYVGTVQGEILKVDLIGSPS-------------FQALTNNEANL-GICRICKYG-DDKLIAASWDGLIE  125 (342)
T ss_dssp             EEEEE-SSSEEEEEEETTSCEEEECSSSSSS-------------EEECBSCCCCS-CEEEEEEET-TTEEEEEETTSEEE
T ss_pred             EEECC-CCCcEEEEEcCCCeEEEEEeccCCc-------------eEeccccCCCC-ceEEEEeCC-CCEEEEEcCCCeEE
Confidence            99999 788 9999999999999999 7651             256677  877 699999999 99999999999999


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      +||+++.......                               ....++..+. |...|.+++|+|++   +++++.|+
T Consensus       126 iwd~~~~~~~~~~-------------------------------~~~~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~  170 (342)
T 1yfq_A          126 VIDPRNYGDGVIA-------------------------------VKNLNSNNTK-VKNKIFTMDTNSSR---LIVGMNNS  170 (342)
T ss_dssp             EECHHHHTTBCEE-------------------------------EEESCSSSSS-SCCCEEEEEECSSE---EEEEESTT
T ss_pred             EEccccccccccc-------------------------------ccCCeeeEEe-eCCceEEEEecCCc---EEEEeCCC
Confidence            9998741000000                               0001112233 77899999999865   99999999


Q ss_pred             eEEEEEccC-CCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC-------
Q 010997          302 CLILWDARV-GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-------  373 (496)
Q Consensus       302 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-------  373 (496)
                      .|++||++. ...........|...|.+++|+|.++.+|++|+.||.|++||++.............+..|..       
T Consensus       171 ~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (342)
T 1yfq_A          171 QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL  250 (342)
T ss_dssp             EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred             eEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccccc
Confidence            999999998 654344455678899999999984478999999999999999987310001167778887765       


Q ss_pred             --CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC-CCCcceEEecCCCCcEEEEec
Q 010997          374 --AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       374 --~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~p~~~~l~~s~s  450 (496)
                        .|.+++|+|++.+ |++++.||.|++||+...               ..+..+.+| ...|.+++  |++.+ +++++
T Consensus       251 ~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~---------------~~~~~~~~~h~~~v~~~~--~~~~~-l~s~s  311 (342)
T 1yfq_A          251 AYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQTR---------------KKIKNFAKFNEDSVVKIA--CSDNI-LCLAT  311 (342)
T ss_dssp             CCCEEEEEECTTTCC-EEEEETTSCEEEEETTTT---------------EEEEECCCCSSSEEEEEE--ECSSE-EEEEE
T ss_pred             ceeEEEEEEcCCCCE-EEEecCCceEEEEcCccH---------------hHhhhhhcccCCCceEec--CCCCe-EEEEe
Confidence              9999999999996 579999999999999874               567778888 99999999  77765 55444


Q ss_pred             CCCCCCCCCCe-EEEee
Q 010997          451 DDCDSTGGGGT-LQIWR  466 (496)
Q Consensus       451 ~d~~sgg~Dg~-i~iw~  466 (496)
                      .       ||+ .+.|.
T Consensus       312 ~-------Dg~~~~~~~  321 (342)
T 1yfq_A          312 S-------DDTFKTNAA  321 (342)
T ss_dssp             E-------CTHHHHCSS
T ss_pred             c-------CCccccccc
Confidence            4       477 44444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.1e-32  Score=263.76  Aligned_cols=283  Identities=8%  Similarity=0.036  Sum_probs=197.6

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCC-------cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSP-------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      -.-+|++++|+| ++++||+|+.+.       .|++|++..........  ........+.+|.+ .|.+++++  ++.+
T Consensus        13 ~g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~--~~~~~~~~l~~~~~-~v~s~~~~--~~~~   86 (365)
T 4h5i_A           13 VGYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ--FHILSEFALEDNDD-SPTAIDAS--KGII   86 (365)
T ss_dssp             CSSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH--EEEEEEEECCTTSC-CCCEEEEE--TTEE
T ss_pred             CCCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee--eeeeeEEEccCCCC-ceEEEEeC--CCEE
Confidence            345799999999 899999997643       59999998763221100  00011234667776 57777664  4444


Q ss_pred             EE-----------ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCc
Q 010997          212 LS-----------GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDT  280 (496)
Q Consensus       212 ~s-----------g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  280 (496)
                      ++           |+.|+.+++|++...........                               .........+...
T Consensus        87 ~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~  135 (365)
T 4h5i_A           87 LVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-------------------------------SVDFDASTNADDY  135 (365)
T ss_dssp             EEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE-------------------------------EECSSCCCCTTCC
T ss_pred             EEEECCCccEEEEecCCCcEEEEEecCCCceEEEee-------------------------------eeceeecCCcccC
Confidence            44           45688899998865322110000                               0000112234556


Q ss_pred             eeEEEEccCCCceEE--EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          281 VEDVTFCPSSAQEFC--SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       281 v~~l~~~~~~~~~l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      +.+++|+|+| .+++  +++.|++|+|||+++++  ....+ .|...|.+++|+| ++.+|++++.++ +.+|+..+   
T Consensus       136 ~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~~--~~~~~-~~~~~V~~v~fsp-dg~~l~s~s~~~-~~~~~~~~---  206 (365)
T 4h5i_A          136 TKLVYISREG-TVAAIASSKVPAIMRIIDPSDLT--EKFEI-ETRGEVKDLHFST-DGKVVAYITGSS-LEVISTVT---  206 (365)
T ss_dssp             EEEEEECTTS-SCEEEEESCSSCEEEEEETTTTE--EEEEE-ECSSCCCEEEECT-TSSEEEEECSSC-EEEEETTT---
T ss_pred             EEEEEEcCCC-CEEEEEECCCCCEEEEeECCCCc--EEEEe-CCCCceEEEEEcc-CCceEEecccee-EEEEEecc---
Confidence            8899999999 5554  55589999999999877  44444 5888999999999 999999998655 66666665   


Q ss_pred             CCCCCCc--eEeccCCCCEEEEEEcCCCCCEEEEEeCCC----cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCC
Q 010997          359 NGVGSPI--NKFEGHSAAVLCVQWSPDKSSVFGSSAEDG----LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  432 (496)
Q Consensus       359 ~~~~~~~--~~~~~h~~~i~~l~~sp~~~~llas~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  432 (496)
                         +..+  .....|...|.+++|+|++.. +++++.|+    .+++|++.....           .......+.+|...
T Consensus       207 ---~~~~~~~~~~~~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~  271 (365)
T 4h5i_A          207 ---GSCIARKTDFDKNWSLSKINFIADDTV-LIAASLKKGKGIVLTKISIKSGNT-----------SVLRSKQVTNRFKG  271 (365)
T ss_dssp             ---CCEEEEECCCCTTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEEEEETTEE-----------EEEEEEEEESSCSC
T ss_pred             ---CcceeeeecCCCCCCEEEEEEcCCCCE-EEEEecCCcceeEEeeccccccee-----------cceeeeeecCCCCC
Confidence               3443  334568889999999999985 56777776    588888876311           11234567889999


Q ss_pred             cceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHH-HHhccceEEEeccCC
Q 010997          433 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE-LEKFKAHVISCTSKP  496 (496)
Q Consensus       433 V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~-l~~h~~~v~~~~~sP  496 (496)
                      |++++|+|++.+ +|       +|+.|++|+|||+.      +++++.+ +.+|..+|++|+|||
T Consensus       272 V~~~~~Spdg~~-la-------sgs~D~~V~iwd~~------~~~~~~~~~~gH~~~V~~v~fSp  322 (365)
T 4h5i_A          272 ITSMDVDMKGEL-AV-------LASNDNSIALVKLK------DLSMSKIFKQAHSFAITEVTISP  322 (365)
T ss_dssp             EEEEEECTTSCE-EE-------EEETTSCEEEEETT------TTEEEEEETTSSSSCEEEEEECT
T ss_pred             eEeEEECCCCCc-eE-------EEcCCCEEEEEECC------CCcEEEEecCcccCCEEEEEECC
Confidence            999999998875 45       44455999999998      6777766 589999999999998

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-31  Score=256.80  Aligned_cols=245  Identities=21%  Similarity=0.334  Sum_probs=195.6

Q ss_pred             CceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCC
Q 010997          187 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  266 (496)
Q Consensus       187 ~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (496)
                      +...+.+|.. .|++++|+|++++|++|+.||.|++||+...                                      
T Consensus         3 ~~~~~~~h~~-~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------------------------------   43 (379)
T 3jrp_A            3 MVVIANAHNE-LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------------------   43 (379)
T ss_dssp             --CCEEECCC-CEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------------------------------
T ss_pred             ccEEecCCcc-cEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------------------------------
Confidence            4567899998 7999999999999999999999999998632                                      


Q ss_pred             CcCCeeeeecCCCceeEEEEccC--CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC--CcEEEEE
Q 010997          267 SVGPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTG  342 (496)
Q Consensus       267 ~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sg  342 (496)
                      .......+.+|...|.+++|+++  + .+|++++.||.|++||++++.......+..|...|.+++|+| +  +.+|+++
T Consensus        44 ~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~  121 (379)
T 3jrp_A           44 THKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVA  121 (379)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEE
T ss_pred             cceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCC-CCCCCEEEEe
Confidence            11233667889999999999876  6 799999999999999999876445566778999999999999 7  8999999


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC-------------CCCCEEEEEeCCCcEEEEECCCCCccc
Q 010997          343 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-------------DKSSVFGSSAEDGLLNIWDYEKVGKKV  409 (496)
Q Consensus       343 s~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-------------~~~~llas~~~dg~i~iwd~~~~~~~~  409 (496)
                      +.||.|++||++...    ......+..|...|.+++|+|             ++. +|++++.||.|++||++....  
T Consensus       122 ~~d~~i~v~d~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~--  194 (379)
T 3jrp_A          122 SSDGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQ--  194 (379)
T ss_dssp             ETTSEEEEEECCTTS----CCCEEEEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTT--
T ss_pred             cCCCcEEEEecCCCC----ceeeEEecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCc--
Confidence            999999999999843    245566788999999999999             466 578999999999999986421  


Q ss_pred             CCCCCCCCCCCeeEEEecCCCCCcceEEecCCC--CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccc
Q 010997          410 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  487 (496)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~--~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~  487 (496)
                               ...+...+.+|...|.+++|+|++  ..++++++.       ||.|+||++...... ....+.....|..
T Consensus       195 ---------~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~-~~~~~~~~~~~~~  257 (379)
T 3jrp_A          195 ---------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-------DRTCIIWTQDNEQGP-WKKTLLKEEKFPD  257 (379)
T ss_dssp             ---------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET-------TSCEEEEEESSTTSC-CEEEESSSSCCSS
T ss_pred             ---------ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC-------CCEEEEEeCCCCCcc-ceeeeeccccCCC
Confidence                     124566788999999999999984  455665554       599999999842100 0122333355888


Q ss_pred             eEEEeccCC
Q 010997          488 HVISCTSKP  496 (496)
Q Consensus       488 ~v~~~~~sP  496 (496)
                      .|.+++|+|
T Consensus       258 ~v~~~~~s~  266 (379)
T 3jrp_A          258 VLWRASWSL  266 (379)
T ss_dssp             CEEEEEECS
T ss_pred             cEEEEEEcC
Confidence            999999997

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.9e-31  Score=263.24  Aligned_cols=276  Identities=19%  Similarity=0.308  Sum_probs=216.5

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ...+|.+.|.+++|+   +++|++|+.||.|++||+.++            +....+.+|.. .|.++.|+  +++|++|
T Consensus       154 ~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~------------~~~~~~~~h~~-~v~~~~~~--~~~l~s~  215 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETG------------ECIHTLYGHTS-TVRCMHLH--EKRVVSG  215 (445)
T ss_dssp             ECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTT------------EEEEEECCCSS-CEEEEEEE--TTEEEEE
T ss_pred             EEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcC------------cEEEEECCCCC-cEEEEEec--CCEEEEE
Confidence            445899999999996   469999999999999999887            56678889988 68999995  5689999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceec-----cCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK-----QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      +.||+|++||+.++.........     ......+.     ......++.+.+|+......+..+.+|...|.+++|  +
T Consensus       216 s~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~  288 (445)
T 2ovr_B          216 SRDATLRVWDIETGQCLHVLMGH-----VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--D  288 (445)
T ss_dssp             ETTSEEEEEESSSCCEEEEEECC-----SSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--C
T ss_pred             eCCCEEEEEECCCCcEEEEEcCC-----cccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--C
Confidence            99999999999876543222110     00111111     111234567788888888888899999999999999  4


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      + ..+++++.||.|++||+++++  ....+..|...+.++.++   +.+|++|+.||.|++||+++      +.++..+.
T Consensus       289 ~-~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~------~~~~~~~~  356 (445)
T 2ovr_B          289 G-IHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKT------GQCLQTLQ  356 (445)
T ss_dssp             S-SEEEEEETTSCEEEEETTTCC--EEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTT------CCEEEEEC
T ss_pred             C-CEEEEEeCCCeEEEEECCCCC--EEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCC------CcEEEEEc
Confidence            5 789999999999999999987  667778899999999885   56999999999999999998      77888887


Q ss_pred             c---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe-----cCCCCCcceEEecCC
Q 010997          370 G---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-----AGHRDKVVDFHWNAS  441 (496)
Q Consensus       370 ~---h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~~~~~p~  441 (496)
                      .   |...|.+++|++  . +|++|+.||.|++||+...               ..+..+     .+|.+.|.+++|+|+
T Consensus       357 ~~~~~~~~v~~~~~~~--~-~l~s~~~dg~v~iwd~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~s~~  418 (445)
T 2ovr_B          357 GPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTG---------------EFIRNLVTLESGGSGGVVWRIRASNT  418 (445)
T ss_dssp             STTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTC---------------CEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             cCCCCCCCEEEEEECC--C-EEEEEeCCCeEEEEECCCC---------------ceeeeeeccccCCCCceEEEEEecCC
Confidence            6   889999999964  3 6789999999999999874               233333     478889999999997


Q ss_pred             CCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          442 DPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      +. ++++++.|   |..+..|.|||+..
T Consensus       419 ~~-~la~~~~d---g~~~~~l~v~df~~  442 (445)
T 2ovr_B          419 KL-VCAVGSRN---GTEETKLLVLDFDV  442 (445)
T ss_dssp             EE-EEEEECSS---SSSCCEEEEEECCC
T ss_pred             EE-EEEEcccC---CCCccEEEEEECCC
Confidence            65 45555544   11122399999983

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-31  Score=281.89  Aligned_cols=268  Identities=12%  Similarity=0.103  Sum_probs=198.5

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      ......+|.+.|++++|+| ++.+||+|+.||.|+||+....            +.... ..|.. .|.+++|+| +++|
T Consensus         9 ~~~~~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~------------~~~~~-~~~~~-~V~~l~fsp-g~~L   72 (902)
T 2oaj_A            9 AETNKYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQV------------EVVIK-LEDRS-AIKEMRFVK-GIYL   72 (902)
T ss_dssp             EEEEEEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTC------------EEEEE-CSSCC-CEEEEEEET-TTEE
T ss_pred             ccccccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCc------------EEEEE-cCCCC-CEEEEEEcC-CCEE
Confidence            3455679999999999999 8899999999999999998765            22222 23554 799999999 8899


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ++++.|++|++||+.++..                                        +..+. |...|++++|+|++ 
T Consensus        73 ~S~s~D~~v~lWd~~~~~~----------------------------------------~~~~~-~~~~V~~v~~sp~g-  110 (902)
T 2oaj_A           73 VVINAKDTVYVLSLYSQKV----------------------------------------LTTVF-VPGKITSIDTDASL-  110 (902)
T ss_dssp             EEEETTCEEEEEETTTCSE----------------------------------------EEEEE-CSSCEEEEECCTTC-
T ss_pred             EEEECcCeEEEEECCCCcE----------------------------------------EEEEc-CCCCEEEEEECCCC-
Confidence            9999999999999975432                                        23443 66789999999999 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccce---------eeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVI---------KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG  362 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  362 (496)
                      .+|++|+.||.|++||+++......         ....+|...|++++|+|.++.+|++|+.||.| +||+++      +
T Consensus       111 ~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~------~  183 (902)
T 2oaj_A          111 DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE------N  183 (902)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT------T
T ss_pred             CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC------C
Confidence            7999999999999999987652100         22357899999999999446899999999999 999998      6


Q ss_pred             CCceEeccC------------------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC--CCCCCCCCCC-e
Q 010997          363 SPINKFEGH------------------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE--QGPRTTNYPA-G  421 (496)
Q Consensus       363 ~~~~~~~~h------------------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~-~  421 (496)
                      .++..+..|                  ...|.+++|+|++. +||+|+.||.|++||++.......  ........+. .
T Consensus       184 ~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~  262 (902)
T 2oaj_A          184 EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD  262 (902)
T ss_dssp             EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTT
T ss_pred             ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCc
Confidence            667777655                  57899999999998 578999999999999987421110  0000000000 0


Q ss_pred             eEEEecCCCCCcceEEec----CCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          422 LFFQHAGHRDKVVDFHWN----ASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       422 ~~~~~~~h~~~V~~~~~~----p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      .......|...|++++|+    |++..++++++.|  .+...+.+++|++
T Consensus       263 ~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~--~~~~~~~v~~~~~  310 (902)
T 2oaj_A          263 YIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI--SRGDNQSLTMIDL  310 (902)
T ss_dssp             CCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS--TTSSCCCEEEEEE
T ss_pred             CCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC--CCCCCceEEEEec
Confidence            000000245689999995    4455778877655  2222358999985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.98  E-value=4.2e-31  Score=252.01  Aligned_cols=236  Identities=25%  Similarity=0.399  Sum_probs=193.4

Q ss_pred             CCceEEecCCCCcceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCC
Q 010997          186 RPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAAD  264 (496)
Q Consensus       186 ~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (496)
                      ....+|+||.+ .|++|+|+|+ +++|+||+.||+|+|||+.+....                                 
T Consensus        29 ~l~~tL~GH~~-~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~---------------------------------   74 (340)
T 4aow_A           29 TLRGTLKGHNG-WVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN---------------------------------   74 (340)
T ss_dssp             EEEEEECCCSS-CEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC---------------------------------
T ss_pred             EEEEEECCccC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc---------------------------------
Confidence            34457999998 7999999998 579999999999999999754321                                 


Q ss_pred             CCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997          265 GPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       265 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~  344 (496)
                        ...+...+.+|...|.+++|+|++ .+|++++.|+.|++|+.....  .......+...+..+.+++ .+.+|++|+.
T Consensus        75 --~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~  148 (340)
T 4aow_A           75 --YGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTTGT--TTRRFVGHTKDVLSVAFSS-DNRQIVSGSR  148 (340)
T ss_dssp             --SEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECT-TSSCEEEEET
T ss_pred             --cceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecccc--eeeeecCCCCceeEEEEee-cCccceeecC
Confidence              122346788999999999999998 799999999999999998876  4555667888999999999 8999999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCC-CEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS-SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  423 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  423 (496)
                      |+.+++||+...     ........+|...|..++|++++. .++++++.|+.|++||+...               .++
T Consensus       149 d~~~~~~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---------------~~~  208 (340)
T 4aow_A          149 DKTIKLWNTLGV-----CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---------------KLK  208 (340)
T ss_dssp             TSCEEEECTTSC-----EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---------------EEE
T ss_pred             CCeEEEEEeCCC-----ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---------------cee
Confidence            999999998862     133445678999999999998764 36789999999999999875               567


Q ss_pred             EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ..+.+|...|++++|+|++.+++        +|+.||.|+|||+.      ..+.+..+.. ...|.+++|+|
T Consensus       209 ~~~~~h~~~v~~~~~s~~~~~l~--------s~s~Dg~i~iwd~~------~~~~~~~~~~-~~~v~~~~~~~  266 (340)
T 4aow_A          209 TNHIGHTGYLNTVTVSPDGSLCA--------SGGKDGQAMLWDLN------EGKHLYTLDG-GDIINALCFSP  266 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEE--------EEETTCEEEEEETT------TTEEEEEEEC-SSCEEEEEECS
T ss_pred             eEecCCCCcEEEEEECCCCCEEE--------EEeCCCeEEEEEec------cCceeeeecC-CceEEeeecCC
Confidence            77889999999999999887654        44556999999998      4555555553 45788888886

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=1e-31  Score=261.78  Aligned_cols=252  Identities=14%  Similarity=0.138  Sum_probs=171.7

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--------CCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--------TEP  209 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--------~~~  209 (496)
                      .|.+.+....+.+ ++.+||+|+.|++|+|||+.......       ..+...+.||.+ .|++++|+|        +++
T Consensus        87 ~~~~~~~~~~~~~-~~~~las~~~d~~v~lw~~~~~~~~~-------~~~~~~~~gH~~-~v~~v~~~p~~~~~~~~d~~  157 (393)
T 4gq1_A           87 LHDGDGNVNSSPV-YSLFLACVCQDNTVRLIITKNETIIT-------QHVLGGKSGHHN-FVNDIDIADVYSADNRLAEQ  157 (393)
T ss_dssp             ----------CCE-EEEEEEEEETTSCEEEEEEETTEEEE-------EEEECTTTSCSS-CEEEEEEEEEECTTCSEEEE
T ss_pred             ccCCCcceeecCC-CCCEEEEEeCCCcEEEEECCCCccce-------eeeecccCCCCC-ceEEEEEccccccccCCCCC
Confidence            4444444444444 77899999999999999998762111       022335678998 799999998        788


Q ss_pred             ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       210 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      +|+||+.|++|+|||+.+..                                        +...+..|...|.+++|+|+
T Consensus       158 ~las~s~D~tv~~Wd~~~~~----------------------------------------~~~~~~~~~~~v~~v~~~p~  197 (393)
T 4gq1_A          158 VIASVGDDCTLIIWRLTDEG----------------------------------------PILAGYPLSSPGISVQFRPS  197 (393)
T ss_dssp             EEEEEETTSEEEEEEEETTE----------------------------------------EEEEEEECSSCEEEEEEETT
T ss_pred             EEEEEECCCeEEEEECCCCc----------------------------------------eeeeecCCCCCcEEEEECCC
Confidence            99999999999999997532                                        22556678899999999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccc-----------------------eeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPV-----------------------IKVEKAHDADLHCVDWNPLDDNLILTGSADN  346 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~-----------------------~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg  346 (496)
                      +..+|++++.|++|++||+++++...                       .....+|...+.++.|++.++..|++++.|+
T Consensus       198 ~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~  277 (393)
T 4gq1_A          198 NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG  277 (393)
T ss_dssp             EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS
T ss_pred             CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC
Confidence            86789999999999999998765211                       0112367788999999744899999999999


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEE------------------EcC-CCCCEEEEEeCCCcEEEEECCCCCc
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ------------------WSP-DKSSVFGSSAEDGLLNIWDYEKVGK  407 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~------------------~sp-~~~~llas~~~dg~i~iwd~~~~~~  407 (496)
                      ++++||+..      +.....+..|...+..+.                  |+| .+..++++|+.||.|+|||+...  
T Consensus       278 ~i~vwd~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~--  349 (393)
T 4gq1_A          278 AWLRWNLFA------NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK--  349 (393)
T ss_dssp             EEEEEEC-------------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT--
T ss_pred             CEEEEECcc------CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC--
Confidence            999999987      444444444444333333                  333 34446678889999999999874  


Q ss_pred             ccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          408 KVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                                   .......+|...|.+++|+|+|.+| |++++        +.+.+|++.
T Consensus       350 -------------~~~~~~~~~~~~V~svafspdG~~L-A~as~--------~Gv~lvrL~  388 (393)
T 4gq1_A          350 -------------DSNSIPIQLGMPIVDFCWHQDGSHL-AIATE--------GSVLLTRLM  388 (393)
T ss_dssp             -------------TCCEEEEECSSCEEEEEECTTSSEE-EEEES--------SEEEEEEEG
T ss_pred             -------------cEEEEecCCCCcEEEEEEcCCCCEE-EEEeC--------CCeEEEEEe
Confidence                         2333456788899999999988764 55554        457777765

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.8e-31  Score=261.29  Aligned_cols=246  Identities=12%  Similarity=0.096  Sum_probs=188.0

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      .-...|.+++|+| ||+++||++.|++|+  |....               ..+.+|.. .|++++|+|+|       .+
T Consensus        13 ~~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~---------------~~l~gh~~-~v~~V~FsPdg-------~~   66 (588)
T 2j04_A           13 EFEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYA---------------KDINCNSK-NLFHVKEFPLE-------FE   66 (588)
T ss_dssp             CCSSSSCCEEECT-TSCEEEECSSSEEEE--EECCC---------------SCCSSBGG-GTEEEEEECCC-------CC
T ss_pred             HhhccEEEEEECC-CCCEEEEEcCCceee--ccccc---------------ceecCCCc-cEEEEEECCCC-------Cc
Confidence            4457899999999 999999999999999  64333               23368988 69999999998       46


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      +.+.+|+.+....                                         ..+ .|...|.+++|+|+| ..|+++
T Consensus        67 ~~~~~~~~~~~~~-----------------------------------------~~~-~~~~~V~~vawSPdG-~~LAs~  103 (588)
T 2j04_A           67 NKLDFELAQQNGL-----------------------------------------LNS-QPVCYPRVCKPSPID-DWMAVL  103 (588)
T ss_dssp             CTTTTSCCCSSCS-----------------------------------------STT-SCSCCEEEEEECSSS-SCEEEE
T ss_pred             ceEEEEeCCCceE-----------------------------------------eec-CCCCcEEEEEECCCC-CEEEEE
Confidence            6666665432110                                         111 347889999999999 789999


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCC-----CeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC-------Cc
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDA-----DLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS-------PI  365 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~-------~~  365 (496)
                      +.||.|++||...    ....+. |..     .|.+++||| ++++||+|+.||+|+|||+..      +.       .+
T Consensus       104 s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~------~~l~~~~~i~l  171 (588)
T 2j04_A          104 SNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRK------NSENTPEFYFE  171 (588)
T ss_dssp             ETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCC------CTTTCCCCEEE
T ss_pred             eCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCC------Cccccccceee
Confidence            9999999999533    344444 554     599999999 999999999999999999987      33       25


Q ss_pred             eEe----ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe-cCCCCCcceEEecC
Q 010997          366 NKF----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHRDKVVDFHWNA  440 (496)
Q Consensus       366 ~~~----~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p  440 (496)
                      .++    .+|...|.+++|+|+|   +++++.|+.|++||+.....            ......+ .+|...|.+++|+ 
T Consensus       172 ~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~------------~~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          172 SSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSH------------QPVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             EEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSS------------CCCEEEEECCCSSCCCCEEEE-
T ss_pred             eeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcc------------ccceeeecccccCcEEEEEEE-
Confidence            666    6788899999999998   45788899999999987411            1122334 4788999999999 


Q ss_pred             CCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc--CC
Q 010997          441 SDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS--KP  496 (496)
Q Consensus       441 ~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~--sP  496 (496)
                       +. .+|+++        |++|++|++.+      ++......+|.+.|.+++|  +|
T Consensus       236 -g~-~LASa~--------~~tIkLWd~~~------~~~~~~~~gh~~~V~~va~~~s~  277 (588)
T 2j04_A          236 -DY-KVVLTC--------PGYVHKIDLKN------YSISSLKTGSLENFHIIPLNHEK  277 (588)
T ss_dssp             -TT-EEEEEC--------SSEEEEEETTT------TEEEEEECSCCSCCCEEEETTCS
T ss_pred             -CC-EEEEEe--------CCeEEEEECCC------CeEEEEEcCCCceEEEEEeeeCC
Confidence             44 555443        38999999983      3332222279999999998  76

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=2.6e-31  Score=259.94  Aligned_cols=278  Identities=19%  Similarity=0.305  Sum_probs=206.2

Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC-CCCceEEecCCCcEEEEecCCccccccCCccccc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAK  240 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p-~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~  240 (496)
                      ++.+++|++...            +....+.+|.+ .|++++|+| ++++|++|+.||.|++||+.+.............
T Consensus        22 ~~~~~v~~~~~~------------~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~   88 (408)
T 4a11_B           22 ESTRRVLGLELN------------KDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC   88 (408)
T ss_dssp             HHHHHHHTEEEC------------TTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE
T ss_pred             cCcceeeccccC------------cceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc
Confidence            446777777666            55667888988 799999999 9999999999999999999865432211100000


Q ss_pred             cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec
Q 010997          241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  320 (496)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  320 (496)
                                                 ........+|...|.+++|+|++..+|++++.||.|++||++++.  ....+ 
T Consensus        89 ---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~-  138 (408)
T 4a11_B           89 ---------------------------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVF-  138 (408)
T ss_dssp             ---------------------------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE--EEEEE-
T ss_pred             ---------------------------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc--cceec-
Confidence                                       000011235899999999999655899999999999999999876  34444 


Q ss_pred             cCCCCeEEEEecCC--CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997          321 AHDADLHCVDWNPL--DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN  398 (496)
Q Consensus       321 ~~~~~v~~i~~sp~--~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~  398 (496)
                      .+...+.++.|+|.  ++.++++|+.||.|++||+++      +..+..+..|...|.+++|+|++.++|++++.||.|+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~  212 (408)
T 4a11_B          139 NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK  212 (408)
T ss_dssp             ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence            47889999999984  234999999999999999998      7888999999999999999999998888999999999


Q ss_pred             EEECCCCCcccCCCCC-CCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC----
Q 010997          399 IWDYEKVGKKVEQGPR-TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR----  473 (496)
Q Consensus       399 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~----  473 (496)
                      +||++........... .............+|...|.+++|+|++.+++        +++.||.|++||+......    
T Consensus       213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--------~~~~dg~i~vwd~~~~~~~~~~~  284 (408)
T 4a11_B          213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL--------TVGTDNRMRLWNSSNGENTLVNY  284 (408)
T ss_dssp             EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETTTCCBCCCCC
T ss_pred             EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE--------EecCCCeEEEEECCCCccceecc
Confidence            9999875322111100 00011111222367889999999999887655        4444589999998753210    


Q ss_pred             -------------------------------------CchHHHHHHHhccceEEEeccCC
Q 010997          474 -------------------------------------PQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       474 -------------------------------------~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                                                           ..++.+..+.+|.+.|.+++|+|
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~  344 (408)
T 4a11_B          285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS  344 (408)
T ss_dssp             CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred             ccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence                                                 23455667788999999999987

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.9e-30  Score=247.73  Aligned_cols=242  Identities=14%  Similarity=0.258  Sum_probs=193.1

Q ss_pred             eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997          189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  268 (496)
Q Consensus       189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (496)
                      ..+.+|.+ .|++++|+|++++|++|+.||.|++||+.+...                                    ..
T Consensus         5 ~~~~gH~~-~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------~~   47 (351)
T 3f3f_A            5 PFDSGHDD-LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------------------------------------NW   47 (351)
T ss_dssp             CEECCCSS-CEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------------------------------------CE
T ss_pred             ccCccccc-ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------------------------------------cc
Confidence            46789988 799999999999999999999999999975321                                    11


Q ss_pred             CCeeeeecCCCceeEEEEccC--CCceEEEEcCCCeEEEEEccCCCc-------cceeeeccCCCCeEEEEecCCC--Cc
Q 010997          269 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTS-------PVIKVEKAHDADLHCVDWNPLD--DN  337 (496)
Q Consensus       269 ~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~v~~i~~sp~~--~~  337 (496)
                      .....+.+|...|.+++|+|.  + .+|++++.||.|++||++.+..       .....+..|...|.+++|+| +  +.
T Consensus        48 ~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~  125 (351)
T 3f3f_A           48 ELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGL  125 (351)
T ss_dssp             EEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCS
T ss_pred             eecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCc
Confidence            234667889999999999994  5 7999999999999999988642       23556678999999999999 7  99


Q ss_pred             EEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-------------cCCCCEEEEEEcCC---CCCEEEEEeCCCcEEEEE
Q 010997          338 LILTGSADNSVRMFDRRNLTSNGVGSPINKFE-------------GHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWD  401 (496)
Q Consensus       338 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~h~~~i~~l~~sp~---~~~llas~~~dg~i~iwd  401 (496)
                      +|++++.||.|++||+++      +..+..+.             .|...+.+++|+|+   +. +|++++.|+.+.+|+
T Consensus       126 ~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~~  198 (351)
T 3f3f_A          126 KLACLGNDGILRLYDALE------PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE-KLAVSALEQAIIYQR  198 (351)
T ss_dssp             EEEEEETTCEEEEEECSS------TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-EEEEEETTEEEEEEE
T ss_pred             EEEEecCCCcEEEecCCC------hHHhccccccccccccccccCCcccceeEEEeccCCCCCc-EEEEecCCCcEEEEc
Confidence            999999999999999998      33333322             68889999999997   55 678999999998887


Q ss_pred             CCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC---cEEEEecCCCCCCCCCCeEEEeecCCCCcC-----
Q 010997          402 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMSDLIYR-----  473 (496)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~---~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~-----  473 (496)
                      ....             ....+..+.+|...|++++|+|++.   .++++++.       ||.|++||+......     
T Consensus       199 ~~~~-------------~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~  258 (351)
T 3f3f_A          199 GKDG-------------KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK-------DGRIRIFKITEKLSPLASEE  258 (351)
T ss_dssp             CTTS-------------CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET-------TSCEEEEEEEECC-------
T ss_pred             cCCC-------------ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC-------CCeEEEEeCCCCcCccccCC
Confidence            7652             2245777889999999999999873   46665555       599999999742100     


Q ss_pred             -----------------------------------CchHHHHHHHhccceEEEeccCC
Q 010997          474 -----------------------------------PQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       474 -----------------------------------~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                                                         ...+.+..+.+|.+.|.+++|+|
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~  316 (351)
T 3f3f_A          259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL  316 (351)
T ss_dssp             --------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred             cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence                                               01245556678999999999997

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=251.31  Aligned_cols=256  Identities=13%  Similarity=0.077  Sum_probs=200.1

Q ss_pred             ecCCCceeEEEecCCCCcE-EEEEeCCCcEEEEeCC--CCCCccccCCCCCCCCceEEe--cCCCCcceeeeecCCCCce
Q 010997          137 IIHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVE--AQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~-lat~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~l~--~h~~~~v~~l~~~p~~~~l  211 (496)
                      .+|.+.|++++|+| ++++ +|+|+.||.|+|||+.  ++            .....+.  .|.. .|.+++|+|++++|
T Consensus        99 ~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~------------~~~~~~~~~~~~~-~v~~~~~sp~~~~l  164 (450)
T 2vdu_B           99 PPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSK------------NVLKLRKRFCFSK-RPNAISIAEDDTTV  164 (450)
T ss_dssp             -CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSS------------SCEEEEEEEECSS-CEEEEEECTTSSEE
T ss_pred             CccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCC------------ceeeeeecccCCC-CceEEEEcCCCCEE
Confidence            36888999999999 6666 4999999999999998  55            4455555  4555 68999999999999


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC--
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS--  289 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--  289 (496)
                      ++|+.||.|++|++.+.....                                    .....+.+|...|.+++|+|+  
T Consensus       165 ~~~~~~g~v~~~~~~~~~~~~------------------------------------~~~~~~~~h~~~v~~~~~sp~~~  208 (450)
T 2vdu_B          165 IIADKFGDVYSIDINSIPEEK------------------------------------FTQEPILGHVSMLTDVHLIKDSD  208 (450)
T ss_dssp             EEEETTSEEEEEETTSCCCSS------------------------------------CCCCCSEECSSCEEEEEEEECTT
T ss_pred             EEEeCCCcEEEEecCCccccc------------------------------------ccceeeecccCceEEEEEcCCCC
Confidence            999999999999987543210                                    022456789999999999999  


Q ss_pred             -CCceEEEEcCCCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          290 -SAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       290 -~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                       + .+|++|+.|+.|++||++++.  .... ..+|...|.+++|+  ++.+|++|+.|+.|++||+++      +.++..
T Consensus       209 ~~-~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~------~~~~~~  277 (450)
T 2vdu_B          209 GH-QFIITSDRDEHIKISHYPQCF--IVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKT------GKNLST  277 (450)
T ss_dssp             SC-EEEEEEETTSCEEEEEESCTT--CEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTT------CCEEEE
T ss_pred             CC-cEEEEEcCCCcEEEEECCCCc--eeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCC------CcEeee
Confidence             6 799999999999999999877  3444 55899999999999  799999999999999999998      666666


Q ss_pred             ecc-------------------------CCCCEEEEEEcCCCCCEEEEEe-CCCcEEEEEC--CCCCcccCCCCCCCCCC
Q 010997          368 FEG-------------------------HSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDY--EKVGKKVEQGPRTTNYP  419 (496)
Q Consensus       368 ~~~-------------------------h~~~i~~l~~sp~~~~llas~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~  419 (496)
                      +..                         ....|.+++|+|++.+++ +++ .|+.|+||++  ...            ..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-~~~~~d~~i~iw~~~~~~~------------~~  344 (450)
T 2vdu_B          278 FDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA-FFVEATKCIIILEMSEKQK------------GD  344 (450)
T ss_dssp             EECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEE-EEETTCSEEEEEEECSSST------------TC
T ss_pred             ecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEE-EEECCCCeEEEEEeccCCC------------Cc
Confidence            652                         346799999999999655 555 8999999999  332            11


Q ss_pred             CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          420 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       420 ~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      ...+..+.+| ..|.+++|+|+ ..+++..+.+ ..++.++.|.||.+..
T Consensus       345 l~~~~~~~~~-~~v~~~~~~~~-~~~v~~~~~~-~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          345 LALKQIITFP-YNVISLSAHND-EFQVTLDNKE-SSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEEEEECS-SCEEEEEEETT-EEEEEECCTT-CCSSCCCSEEEEEEET
T ss_pred             eeeccEeccC-CceEEEEecCC-cEEEEEeccc-CCCCCCcceEEEEEEc
Confidence            2455666777 78999999994 4344333332 1234578899998763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=4.9e-29  Score=240.06  Aligned_cols=275  Identities=14%  Similarity=0.166  Sum_probs=206.2

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      +..++.|.|.-.     ....|+.|     +.+..++||++....                   ........+|.+.|++
T Consensus        41 ~v~~~~~~~~~~-----~g~~l~~~-----~~dg~i~iw~~~~~~-------------------~~~~~~~~~h~~~v~~   91 (368)
T 3mmy_A           41 SIGCLSFSPPTL-----PGNFLIAG-----SWANDVRCWEVQDSG-------------------QTIPKAQQMHTGPVLD   91 (368)
T ss_dssp             CEEEEEECCTTS-----SSEEEEEE-----ETTSEEEEEEECTTS-------------------CEEEEEEEECSSCEEE
T ss_pred             ceEEEEEcCCCC-----CceEEEEE-----CCCCcEEEEEcCCCC-------------------ceeEEEeccccCCEEE
Confidence            566788877520     01344444     356789999874210                   1112345679999999


Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeee--cCCCCceEEecCCCcEEEE
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAM--CPTEPYVLSGGKDKSVVLW  223 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~--~p~~~~l~sg~~Dg~i~iw  223 (496)
                      ++|+| ++++|++++.||.|++||+.+.            +. ..+.+|.. .|.+++|  +|++.+|++|+.||.|++|
T Consensus        92 ~~~~~-~~~~l~s~~~dg~v~iwd~~~~------------~~-~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A           92 VCWSD-DGSKVFTASCDKTAKMWDLSSN------------QA-IQIAQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFW  156 (368)
T ss_dssp             EEECT-TSSEEEEEETTSEEEEEETTTT------------EE-EEEEECSS-CEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred             EEECc-CCCEEEEEcCCCcEEEEEcCCC------------Cc-eeeccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence            99999 8899999999999999999877            22 23567877 6999999  8999999999999999999


Q ss_pred             ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeE
Q 010997          224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCL  303 (496)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i  303 (496)
                      |++++..                                        +..+..+. .+.++.+.+   ..+++++.++.+
T Consensus       157 d~~~~~~----------------------------------------~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i  192 (368)
T 3mmy_A          157 DTRSSNP----------------------------------------MMVLQLPE-RCYCADVIY---PMAVVATAERGL  192 (368)
T ss_dssp             CSSCSSC----------------------------------------SEEEECSS-CEEEEEEET---TEEEEEEGGGCE
T ss_pred             ECCCCcE----------------------------------------EEEEecCC-CceEEEecC---CeeEEEeCCCcE
Confidence            9975432                                        24444443 566666664   468888899999


Q ss_pred             EEEEccCCCccceeeeccCCCCeEEEEecCCCCc----EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC------
Q 010997          304 ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN----LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA------  373 (496)
Q Consensus       304 ~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~----~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~------  373 (496)
                      ++||++............+...+.++++.+ +..    .+++|+.||.|++||++....   ...+..+..|..      
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~---~~~~~~~~~~~~~~~~~~  268 (368)
T 3mmy_A          193 IVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNP---AKDNFTFKCHRSNGTNTS  268 (368)
T ss_dssp             EEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCH---HHHSEEEECSEEC----C
T ss_pred             EEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCc---cccceeeeeeeccccccc
Confidence            999998876433333334555666676655 333    399999999999999997320   045677777766      


Q ss_pred             ------CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          374 ------AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       374 ------~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                            .|.+++|+|++.+ |++++.||.|++||+...               .++..+.+|...|.+++|+|++.++++
T Consensus       269 ~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~~---------------~~~~~~~~~~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          269 APQDIYAVNGIAFHPVHGT-LATVGSDGRFSFWDKDAR---------------TKLKTSEQLDQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             CCEEECCEEEEEECTTTCC-EEEEETTSCEEEEETTTT---------------EEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred             ccccccceEEEEEecCCCE-EEEEccCCeEEEEECCCC---------------cEEEEecCCCCCceEEEECCCCCeEEE
Confidence                  7999999999986 579999999999999874               567778899999999999999887663


Q ss_pred             E
Q 010997          448 S  448 (496)
Q Consensus       448 s  448 (496)
                      +
T Consensus       333 ~  333 (368)
T 3mmy_A          333 A  333 (368)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.2e-30  Score=251.63  Aligned_cols=254  Identities=9%  Similarity=0.063  Sum_probs=187.4

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      +|++.|++++|+| ++       .++.+.+|+.+..             ....+ +|.. .|.+++|+|+|.+||+++.|
T Consensus        50 gh~~~v~~V~FsP-dg-------~~~~~~~~~~~~~-------------~~~~~-~~~~-~V~~vawSPdG~~LAs~s~d  106 (588)
T 2j04_A           50 CNSKNLFHVKEFP-LE-------FENKLDFELAQQN-------------GLLNS-QPVC-YPRVCKPSPIDDWMAVLSNN  106 (588)
T ss_dssp             SBGGGTEEEEEEC-CC-------CCCTTTTSCCCSS-------------CSSTT-SCSC-CEEEEEECSSSSCEEEEETT
T ss_pred             CCCccEEEEEECC-CC-------CcceEEEEeCCCc-------------eEeec-CCCC-cEEEEEECCCCCEEEEEeCC
Confidence            7999999999999 65       4555555554322             11111 4444 79999999999999999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC-----ceeEEEEccCCCc
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-----TVEDVTFCPSSAQ  292 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~~~  292 (496)
                      |.|++||.+.                                          .+..+. |..     .|.+++|+|+| .
T Consensus       107 g~V~iwd~~~------------------------------------------~l~~l~-~~~~~~~~sv~svafSPDG-~  142 (588)
T 2j04_A          107 GNVSVFKDNK------------------------------------------MLTNLD-SKGNLSSRTYHCFEWNPIE-S  142 (588)
T ss_dssp             SCEEEEETTE------------------------------------------EEEECC-CSSCSTTTCEEEEEECSSS-S
T ss_pred             CcEEEEeCCc------------------------------------------eeeecc-CCCccccccEEEEEEcCCC-C
Confidence            9999999643                                          113334 444     59999999999 8


Q ss_pred             eEEEEcCCCeEEEEEccCCCc--c---ceeee----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997          293 EFCSVGDDSCLILWDARVGTS--P---VIKVE----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~--~---~~~~~----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~  363 (496)
                      +|++|+.||+|+|||+..+..  +   .+..+    .+|...|.+++|+| ++  +++++.|+.|++||+..      ..
T Consensus       143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~------~~  213 (588)
T 2j04_A          143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSA------SS  213 (588)
T ss_dssp             CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCS------SS
T ss_pred             EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCC------Cc
Confidence            999999999999999988752  1   13443    56888999999999 77  88888999999999987      33


Q ss_pred             ---CceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe-
Q 010997          364 ---PINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW-  438 (496)
Q Consensus       364 ---~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-  438 (496)
                         ...++ .+|...|.+++|+  +. .+|+++ ++.|++||+...               .......||...|++++| 
T Consensus       214 ~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~---------------~~~~~~~gh~~~V~~va~~  274 (588)
T 2j04_A          214 HQPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNY---------------SISSLKTGSLENFHIIPLN  274 (588)
T ss_dssp             SCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTT---------------EEEEEECSCCSCCCEEEET
T ss_pred             cccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCC---------------eEEEEEcCCCceEEEEEee
Confidence               23556 4788999999999  45 567887 799999999874               332223389999999999 


Q ss_pred             -cCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHH-----------------HHhccceEEEeccCC
Q 010997          439 -NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE-----------------LEKFKAHVISCTSKP  496 (496)
Q Consensus       439 -~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~-----------------l~~h~~~v~~~~~sP  496 (496)
                       +|++.. +++       ++.||+ ++|......+.+.+..+..                 +++ ...|.+++|||
T Consensus       275 ~s~d~~~-La~-------a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SP  340 (588)
T 2j04_A          275 HEKESTI-LLM-------SNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSP  340 (588)
T ss_dssp             TCSSCEE-EEE-------CSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECT
T ss_pred             eCCCCCE-EEE-------EcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECC
Confidence             997754 554       444599 9998754333333322222                 122 34589999998

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=7.5e-29  Score=238.11  Aligned_cols=290  Identities=13%  Similarity=0.093  Sum_probs=192.9

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LS  213 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~s  213 (496)
                      ....|.+.|++++|+| ++++||+|+.+| ++|||+.+.            .....  .+.. .+..+++.++++++ ++
T Consensus        14 ~~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~------------~~~~~--~~~~-~~~~~~~~~~~~~~~~~   76 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPV------------AHIMS--QEMR-HLSKVRMLHRTNYVAFV   76 (355)
T ss_dssp             -----CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTE------------EEEEE--EECS-CCCEEEECTTSSEEEEE
T ss_pred             ccccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCc------------ceeee--eecC-CeEEEEEcCCCCEEEEE
Confidence            3457999999999999 889999998875 789998765            22222  2222 36788888888876 57


Q ss_pred             ecCCCcEEEEecCCccccccCCccccc---cCCCCCceeccCCCCCCCCCCCCCCCCc-CCeeeeecCCCceeEEEEccC
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAK---SAGSSGSIIKQSPKPGDGNDKAADGPSV-GPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      |+.|++|++||+.++............   ...... ...    ...+.+.+|+.... +.+..+..   +...+++++ 
T Consensus        77 ~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~-~~~----~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-  147 (355)
T 3vu4_A           77 TGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREF-IVV----SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-  147 (355)
T ss_dssp             CSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSE-EEE----EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred             ECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCE-EEE----EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence            888999999999877543322110000   000000 000    12344556666555 44444444   444556666 


Q ss_pred             CCceEEE--EcCCCeEEEEEccCCCc--------------cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCc-EEEEe
Q 010997          290 SAQEFCS--VGDDSCLILWDARVGTS--------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNS-VRMFD  352 (496)
Q Consensus       290 ~~~~l~s--~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~-i~iwd  352 (496)
                      .  +++.  |+.||.|++||++++..              +....+.+|...|++++|+| ++.+||+|+.||+ |++||
T Consensus       148 ~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd  224 (355)
T 3vu4_A          148 G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFK  224 (355)
T ss_dssp             T--EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEE
T ss_pred             c--EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEE
Confidence            2  4444  68999999999987541              11566789999999999999 9999999999998 99999


Q ss_pred             CCCCCCCCCCCCceEec-c-CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCC--C------CCCCCCCee
Q 010997          353 RRNLTSNGVGSPINKFE-G-HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG--P------RTTNYPAGL  422 (496)
Q Consensus       353 ~~~~~~~~~~~~~~~~~-~-h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~--~------~~~~~~~~~  422 (496)
                      +++      +.++..+. + |...|.+++|+|++.+ |++++.|+.|+|||+..........  .      .........
T Consensus       225 ~~~------~~~~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (355)
T 3vu4_A          225 TED------GVLVREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN  297 (355)
T ss_dssp             TTT------CCEEEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred             CCC------CcEEEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence            998      78899998 5 9999999999999984 6799999999999997642111000  0      000000011


Q ss_pred             EEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          423 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       423 ~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .....++......++|++++..++        +++.||.+++|++.
T Consensus       298 ~~~~~~~~~~~~~~a~~~d~~~l~--------~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          298 FKLSVDKHVRGCKIAWISESSLVV--------VWPHTRMIETFKVV  335 (355)
T ss_dssp             EECCCCTTCCCCEEEESSSSEEEE--------EETTTTEEEEEEEE
T ss_pred             EEeccCCCCCceEEEEeCCCCEEE--------EEeCCCeEEEEEEE
Confidence            111122233457799999887766        44556999999987

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.1e-30  Score=252.58  Aligned_cols=245  Identities=16%  Similarity=0.141  Sum_probs=163.1

Q ss_pred             eeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997          200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  279 (496)
Q Consensus       200 ~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  279 (496)
                      ....+.+++.+|++|+.|++|+|||++.+....                                   ...+..+.+|.+
T Consensus        93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----------------------------------~~~~~~~~gH~~  137 (393)
T 4gq1_A           93 NVNSSPVYSLFLACVCQDNTVRLIITKNETIIT-----------------------------------QHVLGGKSGHHN  137 (393)
T ss_dssp             ----CCEEEEEEEEEETTSCEEEEEEETTEEEE-----------------------------------EEEECTTTSCSS
T ss_pred             ceeecCCCCCEEEEEeCCCcEEEEECCCCccce-----------------------------------eeeecccCCCCC
Confidence            334445566789999999999999998653211                                   112245678999


Q ss_pred             ceeEEEEcc--------CCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEE
Q 010997          280 TVEDVTFCP--------SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  351 (496)
Q Consensus       280 ~v~~l~~~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iw  351 (496)
                      .|++|+|+|        ++ .+|++|+.|++|+|||++++.  .......|...|.+++|+|.+..+|++|+.||+|++|
T Consensus       138 ~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~w  214 (393)
T 4gq1_A          138 FVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEG--PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIF  214 (393)
T ss_dssp             CEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTE--EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             ceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCc--eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEE
Confidence            999999998        55 799999999999999998876  4555568999999999999444689999999999999


Q ss_pred             eCCCCCCCCCC-------------------CCceEeccCCCCEEEEEEc-CCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997          352 DRRNLTSNGVG-------------------SPINKFEGHSAAVLCVQWS-PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  411 (496)
Q Consensus       352 d~~~~~~~~~~-------------------~~~~~~~~h~~~i~~l~~s-p~~~~llas~~~dg~i~iwd~~~~~~~~~~  411 (496)
                      |+++.......                   .......+|...|.++.|+ |++. .+++++.|+.+++||+.........
T Consensus       215 d~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l  293 (393)
T 4gq1_A          215 DWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEI  293 (393)
T ss_dssp             ETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC---------
T ss_pred             ECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceE
Confidence            99874311000                   0011124678889999997 6777 4679999999999999874322111


Q ss_pred             CCCCC----CCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccc
Q 010997          412 GPRTT----NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  487 (496)
Q Consensus       412 ~~~~~----~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~  487 (496)
                      .....    ............+...+..+.+.+.+..+++++++       ||+|+|||+.      .++.+..+.+|..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~-------Dg~V~lwd~~------~~~~~~~~~~~~~  360 (393)
T 4gq1_A          294 SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ-------HGLIQLINTY------EKDSNSIPIQLGM  360 (393)
T ss_dssp             ----------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT-------TTEEEEEETT------CTTCCEEEEECSS
T ss_pred             eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC-------CCEEEEEECC------CCcEEEEecCCCC
Confidence            11000    00001112223333334444444445556665444       5999999998      5666677788999


Q ss_pred             eEEEeccCC
Q 010997          488 HVISCTSKP  496 (496)
Q Consensus       488 ~v~~~~~sP  496 (496)
                      +|.+|+|||
T Consensus       361 ~V~svafsp  369 (393)
T 4gq1_A          361 PIVDFCWHQ  369 (393)
T ss_dssp             CEEEEEECT
T ss_pred             cEEEEEEcC
Confidence            999999998

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=7.6e-29  Score=244.81  Aligned_cols=282  Identities=9%  Similarity=0.058  Sum_probs=217.6

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      +....+.+.+.+.+++|+| ++.++++++.++.|++||+.++.....       .....+.+|.. .|.+++|+|++.++
T Consensus       114 ~~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~-------~~~~~~~~~~~-~v~~~~~~~~~~~~  184 (433)
T 3bws_A          114 RFISRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRL-------SPPEKYKKKLG-FVETISIPEHNELW  184 (433)
T ss_dssp             EEEEEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEE-------CCCHHHHTTCC-EEEEEEEGGGTEEE
T ss_pred             eEEEEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeee-------cCcccccccCC-ceeEEEEcCCCEEE
Confidence            4455566667788999999 889999999999999999988732110       01113457776 68999999999999


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ++++.|+.|++||++++..                                        +..+..|...+.+++|+|++.
T Consensus       185 ~s~~~d~~v~~~d~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~  224 (433)
T 3bws_A          185 VSQMQANAVHVFDLKTLAY----------------------------------------KATVDLTGKWSKILLYDPIRD  224 (433)
T ss_dssp             EEEGGGTEEEEEETTTCCE----------------------------------------EEEEECSSSSEEEEEEETTTT
T ss_pred             EEECCCCEEEEEECCCceE----------------------------------------EEEEcCCCCCeeEEEEcCCCC
Confidence            9999999999999875322                                        355667888999999999995


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc--------CCCcEEEEeCCCCCCCCCCC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS--------ADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--------~dg~i~iwd~~~~~~~~~~~  363 (496)
                      .++++++.|+.|++||+++++  ....+. +...+.+++|+| ++.+|++++        .||.|++||+++      +.
T Consensus       225 ~l~~~~~~~~~i~~~d~~~~~--~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~------~~  294 (433)
T 3bws_A          225 LVYCSNWISEDISVIDRKTKL--EIRKTD-KIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDK------EK  294 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTE--EEEECC-CCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTT------TE
T ss_pred             EEEEEecCCCcEEEEECCCCc--EEEEec-CCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCC------Cc
Confidence            555777789999999998876  444443 445699999999 888888887        588999999997      55


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  443 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~  443 (496)
                      .+..+ .|...+.+++|+|+++.++++++.|+.|++||+...               ..+..+ .+...+.+++|+|++.
T Consensus       295 ~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---------------~~~~~~-~~~~~~~~~~~s~dg~  357 (433)
T 3bws_A          295 LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---------------KVQKSI-PVFDKPNTIALSPDGK  357 (433)
T ss_dssp             EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---------------EEEEEE-ECSSSEEEEEECTTSS
T ss_pred             EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---------------cEEEEe-cCCCCCCeEEEcCCCC
Confidence            55544 466689999999999888888899999999999864               233333 3667799999999988


Q ss_pred             cEEEEecCC-------CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          444 WTVVSVSDD-------CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       444 ~l~~s~s~d-------~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .++++...+       .++|+.||.|++||+.      +++.+..+.. ...+.+++|+|
T Consensus       358 ~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~------~~~~~~~~~~-~~~~~~~~~s~  410 (433)
T 3bws_A          358 YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT------TDTVKEFWEA-GNQPTGLDVSP  410 (433)
T ss_dssp             EEEEEECCCCCTTTCTTSCCSSCCEEEEEETT------TTEEEEEEEC-SSSEEEEEECT
T ss_pred             EEEEEecCCCccccccccccccceEEEEEECC------CCcEEEEecC-CCCCceEEEcC
Confidence            777665432       1356678999999998      4555555554 34688999887

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.8e-30  Score=269.91  Aligned_cols=243  Identities=21%  Similarity=0.340  Sum_probs=192.5

Q ss_pred             eEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997          189 LILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  268 (496)
Q Consensus       189 ~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (496)
                      ..+.+|.+ .|++++|+|++++|++|+.||+|++||+...                                      ..
T Consensus         3 ~~l~gH~~-~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------------------------------~~   43 (753)
T 3jro_A            3 VIANAHNE-LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------------------------------TH   43 (753)
T ss_dssp             -----CCC-CEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------------------------------EE
T ss_pred             eecccCcc-eeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------------------------------CC
Confidence            46789988 7999999999999999999999999998632                                      12


Q ss_pred             CCeeeeecCCCceeEEEEccC--CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCC--CcEEEEEcC
Q 010997          269 GPRGIYNGHEDTVEDVTFCPS--SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLD--DNLILTGSA  344 (496)
Q Consensus       269 ~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~  344 (496)
                      .....+.+|.+.|.+++|+|+  + .+|++|+.||.|++||++++..........|...|.+++|+| +  +.+|++|+.
T Consensus        44 ~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~  121 (753)
T 3jro_A           44 KLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPLLLVASS  121 (753)
T ss_dssp             EEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEET
T ss_pred             ccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECC-CCCCCEEEEEeC
Confidence            234677899999999999987  6 799999999999999999876445666778999999999999 7  899999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC-------------CCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD-------------KSSVFGSSAEDGLLNIWDYEKVGKKVEQ  411 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~-------------~~~llas~~~dg~i~iwd~~~~~~~~~~  411 (496)
                      ||.|++||++...    ......+.+|...|.+++|+|.             +. +|++|+.||.|++||++....    
T Consensus       122 dg~I~vwdl~~~~----~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~----  192 (753)
T 3jro_A          122 DGKVSVVEFKENG----TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQ----  192 (753)
T ss_dssp             TSEEEEEECCSSS----CCCCEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTT----
T ss_pred             CCcEEEEEeecCC----CcceeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcc----
Confidence            9999999999843    2456677889999999999994             66 467999999999999987421    


Q ss_pred             CCCCCCCCCeeEEEecCCCCCcceEEecCCC--CcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceE
Q 010997          412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASD--PWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV  489 (496)
Q Consensus       412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~--~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v  489 (496)
                             ...+...+.+|...|++++|+|++  ..++++++.       ||.|++||+...... ....+.....|.+.|
T Consensus       193 -------~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-------Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~v  257 (753)
T 3jro_A          193 -------TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-------DRTCIIWTQDNEQGP-WKKTLLKEEKFPDVL  257 (753)
T ss_dssp             -------EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-------SSCEEEEEESSSSSC-CBCCBSSSSCCSSCC
T ss_pred             -------cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-------CCEEEEecCCCCCCc-ceeEEeccCCCCCce
Confidence                   124566778999999999999983  445665544       599999999843110 011333446688899


Q ss_pred             EEeccCC
Q 010997          490 ISCTSKP  496 (496)
Q Consensus       490 ~~~~~sP  496 (496)
                      .+++|+|
T Consensus       258 ~~l~~sp  264 (753)
T 3jro_A          258 WRASWSL  264 (753)
T ss_dssp             CCEEECT
T ss_pred             EEEEEcC
Confidence            9999987

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=5.1e-28  Score=222.74  Aligned_cols=260  Identities=12%  Similarity=0.095  Sum_probs=173.9

Q ss_pred             eeEEEecCCCC--cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC------------------------C
Q 010997          143 VNRIRELPQNT--KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------------------------D  196 (496)
Q Consensus       143 V~~l~~~p~~~--~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~------------------------~  196 (496)
                      |.++.|-..+.  ..+++++. ..|++|+.....         +.+..+++.+|.                        .
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  111 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAW---------QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEI  111 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSS---------BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSE
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCc---------cceeeEEEeccCceeEEEEEcCcccceeeeeeccccc
Confidence            45555544222  24666665 499999998861         112222333322                        1


Q ss_pred             CcceeeeecCC----CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC-CCcCCe
Q 010997          197 NAEFALAMCPT----EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG-PSVGPR  271 (496)
Q Consensus       197 ~~v~~l~~~p~----~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  271 (496)
                      ..|.+|+++|+    ++++++++.+  +.+|++.+++.....                  ....+..+.+++. +.++.+
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss------------------~~g~d~~V~~~~~s~dG~~~  171 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSS------------------GTLSDQQVEVMTFAEDGGGK  171 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEE------------------SSSTTCEEEEEEECTTSCEE
T ss_pred             cceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEec------------------ccCCCCcEEEEEECCCCcee
Confidence            25788899999    8888888744  777877554322110                  0111223333333 234555


Q ss_pred             eeeecCCCceeEEEEcc---CCCceEEEEcCCCeEEEEEccCCCccceeeeccCC---CCeEEEEecCCCCcEE------
Q 010997          272 GIYNGHEDTVEDVTFCP---SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD---ADLHCVDWNPLDDNLI------  339 (496)
Q Consensus       272 ~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~i~~sp~~~~~l------  339 (496)
                      ..+..|...++.++|++   ++ ..|++++.|++|+|||+.+++  .+.++.+|.   ..+.+++|+| ++.++      
T Consensus       172 ~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk--~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~  247 (356)
T 2w18_A          172 ENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQ--LLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHP  247 (356)
T ss_dssp             EEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCC--EEEEEECCC---CCCEEEEEEE-TTEEEEEEC--
T ss_pred             eeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCc--EEEEEcCCCcceeeeEEEEECC-CCCEEEEeccC
Confidence            67788999999999998   55 789999999999999999998  666666543   4678889999 88776      


Q ss_pred             ------EEEcCCCcEEEEeCCCCCCCCCCCCceEe-----ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997          340 ------LTGSADNSVRMFDRRNLTSNGVGSPINKF-----EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  408 (496)
Q Consensus       340 ------~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-----~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~  408 (496)
                            ++|+.|++|++||..+      +..+..+     .+|...+.+..++  +. ++|+++.|++|+|||+.++   
T Consensus       248 ~~~w~laSGs~D~tIklWd~~t------gk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tG---  315 (356)
T 2w18_A          248 CAKESESLRSPVFQLIVINPKT------TLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLG---  315 (356)
T ss_dssp             ----------CCEEEEEEETTT------TEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTC---
T ss_pred             CCcceeeccCCCcEEEEEECCC------CEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCC---
Confidence                  6788999999999988      6665554     4677666655555  54 6789999999999999885   


Q ss_pred             cCCCCCCCCCCCeeEEEecCCCCCcc-eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          409 VEQGPRTTNYPAGLFFQHAGHRDKVV-DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                                  +++..+.+|...+. .++|+|++.+++        ||+.|++|+|||+.
T Consensus       316 ------------k~l~tL~gH~~~vvs~vafSPDG~~La--------SGS~D~TIklWd~~  356 (356)
T 2w18_A          316 ------------QCTALLPPVSDQHWSFVKWSGTDSHLL--------AGQKDGNIFVYHYS  356 (356)
T ss_dssp             ------------SEEEEECCC--CCCCEEEECSSSSEEE--------EECTTSCEEEEEEC
T ss_pred             ------------cEEEEecCCCCCeEEEEEECCCCCEEE--------EEECCCcEEEecCC
Confidence                        56777889988766 589999987655        55566999999963

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.3e-27  Score=232.58  Aligned_cols=258  Identities=12%  Similarity=0.112  Sum_probs=196.8

Q ss_pred             EEecCCCceeEEEecCCCCcE-EEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-
Q 010997          135 KTIIHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-  212 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~-lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-  212 (496)
                      ..+.+...+.+++|+| ++.+ +++++.|+.|++||+.++            +....+..+.  .+.+++|+|++++|+ 
T Consensus        26 ~~~~~~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~------------~~~~~~~~~~--~v~~~~~spdg~~l~~   90 (391)
T 1l0q_A           26 ATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATN------------NVIATVPAGS--SPQGVAVSPDGKQVYV   90 (391)
T ss_dssp             EEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTT------------EEEEEEECSS--SEEEEEECTTSSEEEE
T ss_pred             EEeecCCCcceEEECC-CCCEEEEECCCCCeEEEEECCCC------------eEEEEEECCC--CccceEECCCCCEEEE
Confidence            3444556699999999 5554 578889999999999887            4555666665  489999999999775 


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +++.|+.|++||+.++..                                        +..+. +...+.+++|+|++..
T Consensus        91 ~~~~~~~v~v~d~~~~~~----------------------------------------~~~~~-~~~~~~~~~~s~dg~~  129 (391)
T 1l0q_A           91 TNMASSTLSVIDTTSNTV----------------------------------------AGTVK-TGKSPLGLALSPDGKK  129 (391)
T ss_dssp             EETTTTEEEEEETTTTEE----------------------------------------EEEEE-CSSSEEEEEECTTSSE
T ss_pred             EECCCCEEEEEECCCCeE----------------------------------------EEEEe-CCCCcceEEECCCCCE
Confidence            566789999999976432                                        13333 3346899999999954


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      ++++++.|+.|++||+++++  ....+.. ...+.+++|+| ++.+| ++++.++.|++||+++      +..+..+. +
T Consensus       130 l~~~~~~~~~v~~~d~~~~~--~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~-~  198 (391)
T 1l0q_A          130 LYVTNNGDKTVSVINTVTKA--VINTVSV-GRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVT------NSVIDTVK-V  198 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTE--EEEEEEC-CSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEE-C
T ss_pred             EEEEeCCCCEEEEEECCCCc--EEEEEec-CCCcceEEECC-CCCEEEEEeCCCCEEEEEECCC------CeEEEEEe-c
Confidence            55899999999999998876  4444433 46679999999 77666 7888899999999998      56666655 5


Q ss_pred             CCCEEEEEEcCCCCCEEEEEe--CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          372 SAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      ...+.+++|+|++.++++++.  .++.|++||+...               ..+..+..|. .+.+++|+|++.++++++
T Consensus       199 ~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---------------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~  262 (391)
T 1l0q_A          199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---------------KITARIPVGP-DPAGIAVTPDGKKVYVAL  262 (391)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---------------EEEEEEECCS-SEEEEEECTTSSEEEEEE
T ss_pred             CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---------------eEEEEEecCC-CccEEEEccCCCEEEEEc
Confidence            668999999999997664444  6899999999874               3444455554 478999999999887766


Q ss_pred             cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccce
Q 010997          450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAH  488 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~  488 (496)
                      +.|       +.|++||+.      +++.+..+..|..+
T Consensus       263 ~~d-------~~v~v~d~~------~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          263 SFX-------NTVSVIDTA------TNTITATMAVGKNP  288 (391)
T ss_dssp             TTT-------TEEEEEETT------TTEEEEEEECSSSE
T ss_pred             CCC-------CEEEEEECC------CCcEEEEEECCcCC
Confidence            554       999999998      45666666555544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-28  Score=233.89  Aligned_cols=243  Identities=10%  Similarity=0.058  Sum_probs=172.0

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe-cCCCCcceeeeecC--CCCceEEecC
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCP--TEPYVLSGGK  216 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-~h~~~~v~~l~~~p--~~~~l~sg~~  216 (496)
                      .+.|.++.|+| .   +++++.|++|++|+..........   ...+....+. +|.+ .|.+++|+|  ++++|++|+.
T Consensus        76 ~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~s~  147 (343)
T 3lrv_A           76 TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDS---KTNKVLREIEVDSAN-EIIYMYGHNEVNTEYFIWADN  147 (343)
T ss_dssp             EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEET---TTCCEEEEEECCCSS-CEEEEECCC---CCEEEEEET
T ss_pred             cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeec---CCcceeEEeecCCCC-CEEEEEcCCCCCCCEEEEEeC
Confidence            46788899988 4   999999999999987743110000   0112223333 5555 699999999  9999999999


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee-ecCCCceeEEEEccCCCceEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY-NGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      ||+|++||++++...                                        ..+ ..|...|.+++|+|++ .+|+
T Consensus       148 dg~i~~wd~~~~~~~----------------------------------------~~~~~~~~~~i~~~~~~pdg-~~la  186 (343)
T 3lrv_A          148 RGTIGFQSYEDDSQY----------------------------------------IVHSAKSDVEYSSGVLHKDS-LLLA  186 (343)
T ss_dssp             TCCEEEEESSSSCEE----------------------------------------EEECCCSSCCCCEEEECTTS-CEEE
T ss_pred             CCcEEEEECCCCcEE----------------------------------------EEEecCCCCceEEEEECCCC-CEEE
Confidence            999999999864321                                        222 2355679999999998 7999


Q ss_pred             EEcCCCeEEEEEccCCCccceeeecc-CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc---C
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG---H  371 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---h  371 (496)
                      +|+.||.|++||++++... ...+.. |...|++++|+| ++.+|++++ |+.|++||+++      ...+..+..   |
T Consensus       187 sg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~------~~~~~~~~~~~~~  257 (343)
T 3lrv_A          187 LYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRK------DVGTLAYPTYTIP  257 (343)
T ss_dssp             EECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTS------STTCBSSCCCBC-
T ss_pred             EEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCC------CCcceeecccccc
Confidence            9999999999999998732 144556 999999999999 999999999 55999999998      444444433   4


Q ss_pred             CCCEE--EEEEcCCCCCEEEEEeC-CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC---CCCcE
Q 010997          372 SAAVL--CVQWSPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA---SDPWT  445 (496)
Q Consensus       372 ~~~i~--~l~~sp~~~~llas~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p---~~~~l  445 (496)
                      ...+.  +++|+|++.+ |++++. |+.|+||++....+.               +..    .++..++|.+   +...+
T Consensus       258 ~~~~~~~~~~~~~~g~~-l~~~s~~d~~i~v~~~~~~~~~---------------~~~----~~~~~~~~~~~~~~~~~l  317 (343)
T 3lrv_A          258 EFKTGTVTYDIDDSGKN-MIAYSNESNSLTIYKFDKKTKN---------------WTK----DEESALCLQSDTADFTDM  317 (343)
T ss_dssp             ----CCEEEEECTTSSE-EEEEETTTTEEEEEEECTTTCS---------------EEE----EEEEECCC----CCCCEE
T ss_pred             cccccceEEEECCCCCE-EEEecCCCCcEEEEEEcccccc---------------eEe----cCceeEecCcccccccee
Confidence            44444  6999999995 567777 999999999764211               111    3566777877   55554


Q ss_pred             EEEecCCCCCCCCCCeEEEeecC
Q 010997          446 VVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       446 ~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      + +++.       ||.+.++-..
T Consensus       318 ~-~~~~-------d~~~~~~~~~  332 (343)
T 3lrv_A          318 D-VVCG-------DGGIAAILKT  332 (343)
T ss_dssp             E-EEEE-------TTEEEEEEEC
T ss_pred             E-EEec-------CCceEEEEec
Confidence            4 3333       4788877554

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=6e-27  Score=227.97  Aligned_cols=250  Identities=13%  Similarity=0.135  Sum_probs=194.4

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEecCCcccc
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      +.++++++.|+.|++||+.++            +....+.+|..  +.+++|+|++++| ++++.|+.|++||+.++.. 
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~------------~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-   66 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSN------------KVTATIPVGSN--PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-   66 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTT------------EEEEEEECSSS--EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-
T ss_pred             CEEEEEcCCCCEEEEEECCCC------------eEEEEeecCCC--cceEEECCCCCEEEEECCCCCeEEEEECCCCeE-
Confidence            357889999999999999887            55667777764  7999999999976 6788999999999976432 


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG  311 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~  311 (496)
                                                             +..+..+. .+.+++|+|++..++++++.++.|++||+.++
T Consensus        67 ---------------------------------------~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~  106 (391)
T 1l0q_A           67 ---------------------------------------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN  106 (391)
T ss_dssp             ---------------------------------------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ---------------------------------------EEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC
Confidence                                                   23344343 89999999999555677778899999999987


Q ss_pred             CccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEE
Q 010997          312 TSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGS  390 (496)
Q Consensus       312 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas  390 (496)
                      +  ..... .+...+.+++|+| ++..| ++++.++.|++||+++      ++.+..+..+ ..+.+++|+|++..++++
T Consensus       107 ~--~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~-~~~~~~~~~~dg~~l~~~  175 (391)
T 1l0q_A          107 T--VAGTV-KTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVT------KAVINTVSVG-RSPKGIAVTPDGTKVYVA  175 (391)
T ss_dssp             E--EEEEE-ECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEECC-SSEEEEEECTTSSEEEEE
T ss_pred             e--EEEEE-eCCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCC------CcEEEEEecC-CCcceEEECCCCCEEEEE
Confidence            6  44444 3456789999999 77766 7888899999999998      6777777655 557999999999987788


Q ss_pred             EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          391 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       391 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      ++.|+.|++||+...               ...... .+...+.+++|+|++.+++++..+     +.|+.|++||+.  
T Consensus       176 ~~~~~~v~~~d~~~~---------------~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~-----~~~~~v~~~d~~--  232 (391)
T 1l0q_A          176 NFDSMSISVIDTVTN---------------SVIDTV-KVEAAPSGIAVNPEGTKAYVTNVD-----KYFNTVSMIDTG--  232 (391)
T ss_dssp             ETTTTEEEEEETTTT---------------EEEEEE-ECSSEEEEEEECTTSSEEEEEEEC-----SSCCEEEEEETT--
T ss_pred             eCCCCEEEEEECCCC---------------eEEEEE-ecCCCccceEECCCCCEEEEEecC-----cCCCcEEEEECC--
Confidence            888999999999874               223323 345678999999998887765431     135999999998  


Q ss_pred             CcCCchHHHHHHHhccceEEEeccCC
Q 010997          471 IYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       471 ~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                          .++.+..+..|.. +.+++|+|
T Consensus       233 ----~~~~~~~~~~~~~-~~~~~~s~  253 (391)
T 1l0q_A          233 ----TNKITARIPVGPD-PAGIAVTP  253 (391)
T ss_dssp             ----TTEEEEEEECCSS-EEEEEECT
T ss_pred             ----CCeEEEEEecCCC-ccEEEEcc
Confidence                4555566666554 67888876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=1.8e-26  Score=226.07  Aligned_cols=268  Identities=11%  Similarity=0.073  Sum_probs=198.2

Q ss_pred             EEEecCCCceeEEEecCC-------------CCcEEEEEeCC------CcEEEEeCCCCCCccccCCCCCCCCceEEecC
Q 010997          134 HKTIIHPGEVNRIRELPQ-------------NTKIVATHTDS------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGH  194 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~-------------~~~~lat~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h  194 (496)
                      ....+|...+..+++.+.             .+..++.++.+      +.|++||+...             ....+.+|
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-------------~~~~l~~~  177 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY-------------NQFVVHRS  177 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC-------------SCEEEEEE
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC-------------CCEEEeCC
Confidence            345678888887777641             13455555443      79999999743             23567778


Q ss_pred             CCCcceeeeecCCCCceEEecCCC---cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCe
Q 010997          195 QDNAEFALAMCPTEPYVLSGGKDK---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR  271 (496)
Q Consensus       195 ~~~~v~~l~~~p~~~~l~sg~~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (496)
                      .. .+.+++|+|+|++|++++.|+   .|++||+.++..                                         
T Consensus       178 ~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-----------------------------------------  215 (415)
T 2hqs_A          178 PQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-----------------------------------------  215 (415)
T ss_dssp             SS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----------------------------------------
T ss_pred             CC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----------------------------------------
Confidence            76 689999999999999999875   999999976432                                         


Q ss_pred             eeeecCCCceeEEEEccCCCceEEEEcCCCe--EEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CC--
Q 010997          272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC--LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN--  346 (496)
Q Consensus       272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg--  346 (496)
                      ..+..|...+.+++|+|++..++++++.++.  |++||+++++   ...+..|...+.+++|+| ++.+|++++. ++  
T Consensus       216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~  291 (415)
T 2hqs_A          216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRP  291 (415)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCCSSCEEEEEECT-TSSEEEEEECTTSSC
T ss_pred             EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EEeCcCCCCcccceEECC-CCCEEEEEECCCCCc
Confidence            3456677889999999999444447776655  9999998876   345567888999999999 8998888776 45  


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  424 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  424 (496)
                      .|.+||+..      + ....+..+...+.+++|+|+|++|++++..  +..|.+||+...               . ..
T Consensus       292 ~i~~~d~~~------~-~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~---------------~-~~  348 (415)
T 2hqs_A          292 QVYKVNING------G-APQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG---------------G-VQ  348 (415)
T ss_dssp             EEEEEETTS------S-CCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC---------------C-EE
T ss_pred             EEEEEECCC------C-CEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC---------------C-EE
Confidence            677778876      3 345566677889999999999976544443  258999999874               1 12


Q ss_pred             EecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          425 QHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       425 ~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .+..|. .+.+++|+|++..++.+..++     ....|++|++.       +..+..+.+|.+.|.+++|+|
T Consensus       349 ~l~~~~-~~~~~~~spdg~~l~~~s~~~-----~~~~l~~~d~~-------g~~~~~l~~~~~~v~~~~~~~  407 (415)
T 2hqs_A          349 VLSSTF-LDETPSLAPNGTMVIYSSSQG-----MGSVLNLVSTD-------GRFKARLPATDGQVKFPAWSP  407 (415)
T ss_dssp             ECCCSS-SCEEEEECTTSSEEEEEEEET-----TEEEEEEEETT-------SCCEEECCCSSSEEEEEEECC
T ss_pred             EecCCC-CcCCeEEcCCCCEEEEEEcCC-----CccEEEEEECC-------CCcEEEeeCCCCCCcCCcccc
Confidence            344444 789999999988766544332     01279999987       344567889999999999998

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=4.2e-27  Score=216.69  Aligned_cols=177  Identities=13%  Similarity=0.125  Sum_probs=134.5

Q ss_pred             CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC---CCCceEEecCCCcEEEEecCCccccccCCcc
Q 010997          161 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP---TEPYVLSGGKDKSVVLWSIQDHITSSATDPA  237 (496)
Q Consensus       161 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p---~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~  237 (496)
                      .|+.|++|++...           .+....+.+|.. .+..++|++   ++.+|++|+.|++|+|||+.+++.       
T Consensus       155 ~d~~V~~~~~s~d-----------G~~~~s~~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~-------  215 (356)
T 2w18_A          155 SDQQVEVMTFAED-----------GGGKENQFLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQL-------  215 (356)
T ss_dssp             TTCEEEEEEECTT-----------SCEEEEEEECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCE-------
T ss_pred             CCCcEEEEEECCC-----------CceeeeeccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcE-------
Confidence            3778888888542           145567778887 588999999   678999999999999999987643       


Q ss_pred             ccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC---CceeEEEEccCCCceE------------EEEcCCCe
Q 010997          238 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE---DTVEDVTFCPSSAQEF------------CSVGDDSC  302 (496)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l------------~s~~~dg~  302 (496)
                                                       +..+.+|.   ..+.+++|+|++ .++            ++|+.|++
T Consensus       216 ---------------------------------l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          216 ---------------------------------LKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             ---------------------------------EEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEE
T ss_pred             ---------------------------------EEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcE
Confidence                                             24555433   367778899988 554            67889999


Q ss_pred             EEEEEccCCCccceeee-----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEE-
Q 010997          303 LILWDARVGTSPVIKVE-----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVL-  376 (496)
Q Consensus       303 i~iwd~~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~-  376 (496)
                      |++||..++.  .+..+     .+|...+.+..+   ++.++|+|+.|++|+|||+.+      ++++.++.+|...+. 
T Consensus       262 IklWd~~tgk--~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~t------Gk~l~tL~gH~~~vvs  330 (356)
T 2w18_A          262 LIVINPKTTL--SVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLL------GQCTALLPPVSDQHWS  330 (356)
T ss_dssp             EEEEETTTTE--EEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTT------CSEEEEECCC--CCCC
T ss_pred             EEEEECCCCE--EEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCC------CcEEEEecCCCCCeEE
Confidence            9999998876  33322     356555554444   367899999999999999999      899999999987655 


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997          377 CVQWSPDKSSVFGSSAEDGLLNIWDY  402 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~i~iwd~  402 (496)
                      +++|+|+|++ |++|+.|++|+|||+
T Consensus       331 ~vafSPDG~~-LaSGS~D~TIklWd~  355 (356)
T 2w18_A          331 FVKWSGTDSH-LLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECSSSSE-EEEECTTSCEEEEEE
T ss_pred             EEEECCCCCE-EEEEECCCcEEEecC
Confidence            5899999995 679999999999996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=2.3e-27  Score=234.52  Aligned_cols=255  Identities=17%  Similarity=0.305  Sum_probs=196.2

Q ss_pred             cCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCcee-----ccCCCCCCCCCCCCCCCC
Q 010997          193 GHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII-----KQSPKPGDGNDKAADGPS  267 (496)
Q Consensus       193 ~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  267 (496)
                      +|.. .|+++.+  ++++|++|+.||.|++||+.++.........     ......+     .......++.+.+|+...
T Consensus       131 ~~~~-~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-----~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          131 ETSK-GVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGH-----TGSVLCLQYDERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SSCC-CEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCC-----SSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred             CCCC-cEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC-----CCcEEEEEECCCEEEEEcCCCeEEEEECCC
Confidence            3444 5777777  7899999999999999999876543322211     1111111     111124567888999999


Q ss_pred             cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc-ceeeeccCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADN  346 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg  346 (496)
                      ...+..+.+|...|.+++|++   ..+++|+.||.|++||++++... ......+|...|.+++|   ++.+|++|+.||
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg  276 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDR  276 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTS
T ss_pred             CcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCC
Confidence            999999999999999999973   58999999999999999987632 12556789999999999   468999999999


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  426 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  426 (496)
                      .|++||+++      +..+..+.+|...|.+++|+  +. ++++|+.||.|++||++..               ..+..+
T Consensus       277 ~i~vwd~~~------~~~~~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~---------------~~~~~~  332 (435)
T 1p22_A          277 TIKVWNTST------CEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECG---------------ACLRVL  332 (435)
T ss_dssp             EEEEEETTT------CCEEEEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTC---------------CEEEEE
T ss_pred             eEEEEECCc------CcEEEEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCC---------------CEEEEE
Confidence            999999998      78899999999999999995  34 5789999999999999874               466778


Q ss_pred             cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC---CchHHHHHHHhccceEEEeccC
Q 010997          427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR---PQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~---~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                      .+|...|.+++|+  +. .++++       +.||.|++||+......   .....+..+.+|.++|.+++|.
T Consensus       333 ~~h~~~v~~~~~~--~~-~l~sg-------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  394 (435)
T 1p22_A          333 EGHEELVRCIRFD--NK-RIVSG-------AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD  394 (435)
T ss_dssp             CCCSSCEEEEECC--SS-EEEEE-------ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC
T ss_pred             eCCcCcEEEEEec--CC-EEEEE-------eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC
Confidence            8999999999993  44 45544       44599999999721100   0011567778999999998874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1.2e-25  Score=221.88  Aligned_cols=242  Identities=10%  Similarity=0.077  Sum_probs=189.9

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEec
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGG  215 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~  215 (496)
                      .+|.+.|++++|+| ++.++++++.|+.|++||+.+.            +....+..|.. .+.+++|+|+++++ ++++
T Consensus       166 ~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~------------~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~  231 (433)
T 3bws_A          166 KKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTL------------AYKATVDLTGK-WSKILLYDPIRDLVYCSNW  231 (433)
T ss_dssp             HTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTC------------CEEEEEECSSS-SEEEEEEETTTTEEEEEET
T ss_pred             cccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCc------------eEEEEEcCCCC-CeeEEEEcCCCCEEEEEec
Confidence            37899999999988 8899999999999999999877            55667777776 68999999999877 4666


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      .|+.|++||+.++...                                        ..+.. ...+.+++|+|++ ..++
T Consensus       232 ~~~~i~~~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~~~~~g-~~l~  269 (433)
T 3bws_A          232 ISEDISVIDRKTKLEI----------------------------------------RKTDK-IGLPRGLLLSKDG-KELY  269 (433)
T ss_dssp             TTTEEEEEETTTTEEE----------------------------------------EECCC-CSEEEEEEECTTS-SEEE
T ss_pred             CCCcEEEEECCCCcEE----------------------------------------EEecC-CCCceEEEEcCCC-CEEE
Confidence            8999999999754321                                        22222 3458999999999 5677


Q ss_pred             EEc--------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997          296 SVG--------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPIN  366 (496)
Q Consensus       296 s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  366 (496)
                      +++        .|+.|++||+++++  .... ..|...+.+++|+| ++. ++++++.|+.|++||+.+      +..+.
T Consensus       270 ~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~-~~~~~~~~~~~~~~-~g~~l~~~~~~~~~v~v~d~~~------~~~~~  339 (433)
T 3bws_A          270 IAQFSASNQESGGGRLGIYSMDKEK--LIDT-IGPPGNKRHIVSGN-TENKIYVSDMCCSKIEVYDLKE------KKVQK  339 (433)
T ss_dssp             EEEEESCTTCSCCEEEEEEETTTTE--EEEE-EEEEECEEEEEECS-STTEEEEEETTTTEEEEEETTT------TEEEE
T ss_pred             EEECCCCccccCCCeEEEEECCCCc--EEee-ccCCCCcceEEECC-CCCEEEEEecCCCEEEEEECCC------CcEEE
Confidence            766        58899999998876  3333 35666899999999 664 667789999999999997      66666


Q ss_pred             EeccCCCCEEEEEEcCCCCCEEEEEeC--------------CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCC
Q 010997          367 KFEGHSAAVLCVQWSPDKSSVFGSSAE--------------DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK  432 (496)
Q Consensus       367 ~~~~h~~~i~~l~~sp~~~~llas~~~--------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  432 (496)
                      .+. +...+.+++|+|++..+++++..              ||.|++||+.+.               ..+..+.+ ...
T Consensus       340 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------------~~~~~~~~-~~~  402 (433)
T 3bws_A          340 SIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------------TVKEFWEA-GNQ  402 (433)
T ss_dssp             EEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------------EEEEEEEC-SSS
T ss_pred             Eec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---------------cEEEEecC-CCC
Confidence            665 67889999999999866544333              579999999874               33444444 457


Q ss_pred             cceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          433 VVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       433 V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +.+++|+|++.+++++++.       |+.|++|++.
T Consensus       403 ~~~~~~s~dg~~l~~~~~~-------d~~i~v~~~~  431 (433)
T 3bws_A          403 PTGLDVSPDNRYLVISDFL-------DHQIRVYRRD  431 (433)
T ss_dssp             EEEEEECTTSCEEEEEETT-------TTEEEEEEET
T ss_pred             CceEEEcCCCCEEEEEECC-------CCeEEEEEec
Confidence            8999999999887765444       4999999987

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=2.7e-26  Score=220.26  Aligned_cols=213  Identities=11%  Similarity=0.139  Sum_probs=150.0

Q ss_pred             CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997          186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  265 (496)
Q Consensus       186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (496)
                      .++..+.+|.. .|++++|+|+|++|++|+.|+ +++||+++...                                   
T Consensus        10 ~~~~~~~~h~~-~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-----------------------------------   52 (355)
T 3vu4_A           10 NPIVPENHVSN-PVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-----------------------------------   52 (355)
T ss_dssp             ---------CC-CCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-----------------------------------
T ss_pred             CCccccccCCC-ceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-----------------------------------
Confidence            44556678877 799999999999999998765 78999875322                                   


Q ss_pred             CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCC---------
Q 010997          266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDD---------  336 (496)
Q Consensus       266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~---------  336 (496)
                             .+..+...+..+++.+.+..++++++.|++|++||+++++  .+..+ .+...|.+++|++ +.         
T Consensus        53 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--~~~~~-~~~~~v~~v~~~~-~~~~~~~~~~i  121 (355)
T 3vu4_A           53 -------IMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--DVSRI-KVDAPVKDLFLSR-EFIVVSYGDVI  121 (355)
T ss_dssp             -------EEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--EEEEE-ECSSCEEEEEECS-SEEEEEETTEE
T ss_pred             -------eeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--EEEEE-ECCCceEEEEEcC-CEEEEEEcCEE
Confidence                   1111222477788888774455778888999999998876  44444 3667888888876 21         


Q ss_pred             --------------------------cEEEE--EcCCCcEEEEeCCCCCCC---------CCCCC-ceEeccCCCCEEEE
Q 010997          337 --------------------------NLILT--GSADNSVRMFDRRNLTSN---------GVGSP-INKFEGHSAAVLCV  378 (496)
Q Consensus       337 --------------------------~~l~s--gs~dg~i~iwd~~~~~~~---------~~~~~-~~~~~~h~~~i~~l  378 (496)
                                                .++++  |+.||.|++||+++....         ....+ +..+.+|...|+++
T Consensus       122 ~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~  201 (355)
T 3vu4_A          122 SVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMV  201 (355)
T ss_dssp             EEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEE
T ss_pred             EEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEE
Confidence                                      23444  577888888888762100         00012 78899999999999


Q ss_pred             EEcCCCCCEEEEEeCCCc-EEEEECCCCCcccCCCCCCCCCCCeeEEEec-C-CCCCcceEEecCCCCcEEEEecCCCCC
Q 010997          379 QWSPDKSSVFGSSAEDGL-LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA-G-HRDKVVDFHWNASDPWTVVSVSDDCDS  455 (496)
Q Consensus       379 ~~sp~~~~llas~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~V~~~~~~p~~~~l~~s~s~d~~s  455 (496)
                      +|+|++. +||+|+.|++ |+|||+.+.               ..+..+. + |...|++++|+|++.+++ +       
T Consensus       202 ~~s~~g~-~l~s~s~d~~~v~iwd~~~~---------------~~~~~~~~g~h~~~v~~~~~s~~~~~l~-s-------  257 (355)
T 3vu4_A          202 RLNRKSD-MVATCSQDGTIIRVFKTEDG---------------VLVREFRRGLDRADVVDMKWSTDGSKLA-V-------  257 (355)
T ss_dssp             EECTTSS-EEEEEETTCSEEEEEETTTC---------------CEEEEEECTTCCSCEEEEEECTTSCEEE-E-------
T ss_pred             EECCCCC-EEEEEeCCCCEEEEEECCCC---------------cEEEEEEcCCCCCcEEEEEECCCCCEEE-E-------
Confidence            9999998 5789999998 999999874               4555565 5 999999999999887654 4       


Q ss_pred             CCCCCeEEEeecCCC
Q 010997          456 TGGGGTLQIWRMSDL  470 (496)
Q Consensus       456 gg~Dg~i~iw~~~~~  470 (496)
                      |+.|++|+|||+...
T Consensus       258 ~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          258 VSDKWTLHVFEIFND  272 (355)
T ss_dssp             EETTCEEEEEESSCC
T ss_pred             EECCCEEEEEEccCC
Confidence            444599999999753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.4e-24  Score=212.69  Aligned_cols=263  Identities=11%  Similarity=0.043  Sum_probs=194.8

Q ss_pred             CCCceeEEEecCCCCcEEEEEe----CCC----cEEEEeC--CCCCCccccCCCCCCCCc--eEEecCCCCcceeeeecC
Q 010997          139 HPGEVNRIRELPQNTKIVATHT----DSP----DVLIWDV--EAQPNRHAVLGATNSRPD--LILTGHQDNAEFALAMCP  206 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~--~~l~~h~~~~v~~l~~~p  206 (496)
                      +.+.|+..+|.+.+..++++|+    .+|    .|+|||+  .++            +.+  ..+.+|.. .+..+++++
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~------------~~~~~~~~~~~~~-~~~~~~~~~  127 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG------------TVLAQNSYKVNKQ-WLRYAGHTA  127 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT------------CEEEEEEEEECGG-GHHHHHHHH
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC------------CEEeeeEEEcChh-HHHHHHHHH
Confidence            4467899999997778888887    467    8999999  776            333  45788877 577777764


Q ss_pred             --------------CCCceEEecCC------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCC
Q 010997          207 --------------TEPYVLSGGKD------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGP  266 (496)
Q Consensus       207 --------------~~~~l~sg~~D------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (496)
                                    .+..++.++.+      +.|++||++...                                     
T Consensus       128 ~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-------------------------------------  170 (415)
T 2hqs_A          128 SDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-------------------------------------  170 (415)
T ss_dssp             HHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-------------------------------------
T ss_pred             HHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-------------------------------------
Confidence                          25566666654      799999986321                                     


Q ss_pred             CcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC---eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE-EE
Q 010997          267 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TG  342 (496)
Q Consensus       267 ~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sg  342 (496)
                          ...+.+|...|.+++|+|++ ..|++++.++   .|++||+.+++  . ..+..|...+.+++|+| ++..|+ ++
T Consensus       171 ----~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~--~-~~l~~~~~~~~~~~~sp-dg~~la~~~  241 (415)
T 2hqs_A          171 ----QFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA--V-RQVASFPRHNGAPAFSP-DGSKLAFAL  241 (415)
T ss_dssp             ----CEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC--E-EEEECCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ----CEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCc--E-EEeecCCCcccCEEEcC-CCCEEEEEE
Confidence                25677889999999999999 6888888775   99999999877  2 34557888999999999 888777 67


Q ss_pred             cCCCc--EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCcccCCCCCCCCC
Q 010997          343 SADNS--VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNY  418 (496)
Q Consensus       343 s~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd~~~~~~~~~~~~~~~~~  418 (496)
                      +.++.  |++||+.+      +. ...+..|...+.+++|+|+|++|++++..++  .|.+||+....            
T Consensus       242 ~~~g~~~i~~~d~~~------~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------------  302 (415)
T 2hqs_A          242 SKTGSLNLYVMDLAS------GQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------------  302 (415)
T ss_dssp             CTTSSCEEEEEETTT------CC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------------
T ss_pred             ecCCCceEEEEECCC------CC-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------------
Confidence            66665  99999987      33 4677888899999999999997654443355  57777877631            


Q ss_pred             CCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          419 PAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       419 ~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                          ...+..|...+.+++|+|++.+++++..++     .++.|++||+..      ++. ..+..+. .+.+++|+|
T Consensus       303 ----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~-----g~~~i~~~d~~~------~~~-~~l~~~~-~~~~~~~sp  363 (415)
T 2hqs_A          303 ----PQRITWEGSQNQDADVSSDGKFMVMVSSNG-----GQQHIAKQDLAT------GGV-QVLSSTF-LDETPSLAP  363 (415)
T ss_dssp             ----CEECCCSSSEEEEEEECTTSSEEEEEEECS-----SCEEEEEEETTT------CCE-EECCCSS-SCEEEEECT
T ss_pred             ----EEEEecCCCcccCeEECCCCCEEEEEECcC-----CceEEEEEECCC------CCE-EEecCCC-CcCCeEEcC
Confidence                122344566788999999998776655432     146899999983      332 2344443 788888887

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=2.9e-23  Score=193.12  Aligned_cols=244  Identities=11%  Similarity=0.080  Sum_probs=179.8

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC-CCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA-QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      ..+..|.+.|.+++|+| ++++||+++ ++.|++||+.+ +            +......+|....+.+++|+|++++|+
T Consensus        35 ~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~spdg~~l~  100 (297)
T 2ojh_A           35 RVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDP------------SPEKVDTGFATICNNDHGISPDGALYA  100 (297)
T ss_dssp             EEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCC------------SCEECCCTTCCCBCSCCEECTTSSEEE
T ss_pred             eeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCC------------CceEeccccccccccceEECCCCCEEE
Confidence            35567899999999999 888888876 78999999988 6            333444556444688999999999999


Q ss_pred             Eec--CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          213 SGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       213 sg~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      +++  .++.+.||.++....                                       ....+..+ ..+..++|+|++
T Consensus       101 ~~~~~~~~~~~l~~~~~~~~---------------------------------------~~~~~~~~-~~~~~~~~spdg  140 (297)
T 2ojh_A          101 ISDKVEFGKSAIYLLPSTGG---------------------------------------TPRLMTKN-LPSYWHGWSPDG  140 (297)
T ss_dssp             EEECTTTSSCEEEEEETTCC---------------------------------------CCEECCSS-SSEEEEEECTTS
T ss_pred             EEEeCCCCcceEEEEECCCC---------------------------------------ceEEeecC-CCccceEECCCC
Confidence            988  445677776542110                                       01222222 248889999999


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      ..++++++.++.++||++..... ....+..+...+.+++|+| ++.+|++++ .++.++||++...     ...+..+.
T Consensus       141 ~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~-----~~~~~~~~  213 (297)
T 2ojh_A          141 KSFTYCGIRDQVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVD-----GSSVERIT  213 (297)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTC-CEEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT-----SSCEEECC
T ss_pred             CEEEEEECCCCceEEEEEECCCC-cceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCC-----CCCcEEEe
Confidence            54555888999999999754332 2345557788999999999 888777655 5899999998732     35677788


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCC-----------CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAED-----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  438 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  438 (496)
                      .|...+..++|+|++.+|+ +++.+           +.|.+||+...             ....+....+|...+..++|
T Consensus       214 ~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~~~l~~~d~~~~-------------~~~~~~~~~~~~~~~~~~~~  279 (297)
T 2ojh_A          214 DSAYGDWFPHPSPSGDKVV-FVSYDADVFDHPRDLDVRVQLMDMDGG-------------NVETLFDLFGGQGTMNSPNW  279 (297)
T ss_dssp             CCSEEEEEEEECTTSSEEE-EEEEETTCCSCCSSEEEEEEEEETTSC-------------SCEEEEEEEESTTTSCSCCB
T ss_pred             cCCcccCCeEECCCCCEEE-EEEcCCCCCcccccCceEEEEEecCCC-------------CceeeeccCCCCcccccceE
Confidence            8888999999999999754 55444           56999999873             22345556678889999999


Q ss_pred             cCCCCcEEEEecCC
Q 010997          439 NASDPWTVVSVSDD  452 (496)
Q Consensus       439 ~p~~~~l~~s~s~d  452 (496)
                      +|++..+++++.++
T Consensus       280 spdg~~l~~~~~~~  293 (297)
T 2ojh_A          280 SPDGDEFAYVRYFP  293 (297)
T ss_dssp             CTTSSEEEEEEECC
T ss_pred             CCCCCEEEEEEecc
Confidence            99998776655443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=2.4e-22  Score=192.13  Aligned_cols=301  Identities=11%  Similarity=0.157  Sum_probs=198.2

Q ss_pred             eEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeC--
Q 010997           84 RQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTD--  161 (496)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~--  161 (496)
                      .+++|+|+++.+ ....+++|.++...                  ..+.......+...+..++|+| ++++++++..  
T Consensus         2 ~~~~~vg~y~~~-~~~~i~v~~~d~~t------------------g~~~~~~~~~~~~~p~~~a~sp-dg~l~~~~~~~~   61 (347)
T 3hfq_A            2 QERILFGTYTKK-TSQGIYQGTLDTTA------------------KTLTNDGLLAATQNPTYLALSA-KDCLYSVDKEDD   61 (347)
T ss_dssp             EEEEEEEECCSS-SCCEEEEEEEETTT------------------TEEEEEEEEEECSCCCCEEECT-TCEEEEEEEETT
T ss_pred             CcEEEEEeccCC-CCCCEEEEEEcCCC------------------CeEEEeeeeeccCCcceEEEcc-CCeEEEEEecCC
Confidence            478999998765 35578888765311                  1123334556778889999999 7775545432  


Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec-CCCcEEEEecCCccccccCCccccc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAK  240 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~  240 (496)
                      ++.|++||+.++.          .+.+..+..+.. .+..++|+|++++|++++ .++.|.+|++...........  . 
T Consensus        62 ~~~v~~~~~~~g~----------~~~~~~~~~~~~-~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~--~-  127 (347)
T 3hfq_A           62 EGGIAAWQIDGQT----------AHKLNTVVAPGT-PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDT--V-  127 (347)
T ss_dssp             EEEEEEEEEETTE----------EEEEEEEEEESC-CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEE--E-
T ss_pred             CceEEEEEecCCc----------EEEeeeeecCCC-CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecce--e-
Confidence            6899999996651          122334444554 468999999999888777 789999999863111000000  0 


Q ss_pred             cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEcc-CCCccceeee
Q 010997          241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR-VGTSPVIKVE  319 (496)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~  319 (496)
                      ...+                       ..+.  ...+...+.+++|+|++. ++++...++.|.+||+. .+........
T Consensus       128 ~~~~-----------------------~~p~--~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~  181 (347)
T 3hfq_A          128 QHSG-----------------------HGPR--PEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVL  181 (347)
T ss_dssp             ECCC-----------------------CCSS--TTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             ecCC-----------------------CCCC--ccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeE
Confidence            0000                       0000  001234588999999995 88888889999999998 3431111111


Q ss_pred             c-cCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCC--CceEeccCC------CCEEEEEEcCCCCCEEE
Q 010997          320 K-AHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS--PINKFEGHS------AAVLCVQWSPDKSSVFG  389 (496)
Q Consensus       320 ~-~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~--~~~~~~~h~------~~i~~l~~sp~~~~lla  389 (496)
                      . .....+..++|+| ++.++ +++..++.|.+|++....    +.  .+..+....      ..+..++|+|+|++|++
T Consensus       182 ~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v  256 (347)
T 3hfq_A          182 TMEAGFGPRHLVFSP-DGQYAFLAGELSSQIASLKYDTQT----GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV  256 (347)
T ss_dssp             ECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEETTT----TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred             EcCCCCCCceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence            1 2334688999999 88855 556778999999987421    22  222333222      45889999999998877


Q ss_pred             EEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          390 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       390 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +...++.|.+|++...+            ....+.....+...+..++|+|++.+++++..++       +.|.+|++.
T Consensus       257 ~~~~~~~v~v~~~~~~g------------~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-------~~v~v~~~d  316 (347)
T 3hfq_A          257 SNRGYNTLAVFAVTADG------------HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-------DNATLYARD  316 (347)
T ss_dssp             EEETTTEEEEEEECGGG------------CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT-------TEEEEEEEC
T ss_pred             EeCCCCEEEEEEECCCC------------cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-------CcEEEEEEe
Confidence            88889999999997421            1234555566666789999999998887655544       899999765

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=1.2e-22  Score=205.19  Aligned_cols=287  Identities=11%  Similarity=0.094  Sum_probs=201.8

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeC--CCCCCccccCCCCCCCCceEEecCCCCcceeeeecC----CCCceEEec-
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDV--EAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP----TEPYVLSGG-  215 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p----~~~~l~sg~-  215 (496)
                      +..++|+| ++++|++++.|+.|.+||+  .+.            +.+..+..+.  .+..++|+|    +|++|++++ 
T Consensus       181 ~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~------------~~~~~i~~g~--~p~~va~sp~~~~dg~~l~v~~~  245 (543)
T 1nir_A          181 VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEP------------TKVAEIKIGI--EARSVESSKFKGYEDRYTIAGAY  245 (543)
T ss_dssp             EEEEEECT-TSCEEEEEETTSEEEEEETTSSSC------------EEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEE
T ss_pred             cceEEECC-CCCEEEEECCCCeEEEEECcCCCC------------cEEEEEecCC--CcceEEeCCCcCCCCCEEEEEEc
Confidence            89999999 8899999999999999999  555            4455666443  468999999    999998887 


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-CCceeEEEEccCCCceE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l  294 (496)
                      .+++|.+||..+.+..........                              .......| ...+..+.++|+++.++
T Consensus       246 ~~~~v~v~D~~t~~~~~~i~~~g~------------------------------~~~~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          246 WPPQFAIMDGETLEPKQIVSTRGM------------------------------TVDTQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             ESSEEEEEETTTCCEEEEEECCEE------------------------------CSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             cCCeEEEEeccccccceeecccCc------------------------------ccCccccccCCceEEEEECCCCCEEE
Confidence            489999999876543211100000                              00000012 23788999999987888


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCCCCCCCCCceEecc---
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKFEG---  370 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~---  370 (496)
                      ++...++.|.+||+.+.+....... .+...+..++|+| ++++|+ ++..+++|.+||+.+      ++.+..+..   
T Consensus       296 vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~t------g~l~~~i~~g~~  367 (543)
T 1nir_A          296 VNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKD------RRLSALVDVGKT  367 (543)
T ss_dssp             EEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTT------TEEEEEEECSSS
T ss_pred             EEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECC-CCCEEEEEecCCCeEEEEECCC------CeEEEeeccCCC
Confidence            9999999999999988663222233 4667788999999 888665 455689999999998      777777764   


Q ss_pred             -CCCCEEEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997          371 -HSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       371 -h~~~i~~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s  448 (496)
                       |.+....+ ++|++..+++++. .|++|.|||+...+...        ...+++..+.+|...+..++++|+++++.+.
T Consensus       368 ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~--------~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~  438 (543)
T 1nir_A          368 PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--------YAWKKVAELQGQGGGSLFIKTHPKSSHLYVD  438 (543)
T ss_dssp             BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--------TBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred             CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch--------hcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence             55444333 5788555788876 58999999998721110        1136778888998889999999999987753


Q ss_pred             ecCCCCCCC----CCCeEEEeecCCCCcCCchHHHHH---HHhccceEEEeccCC
Q 010997          449 VSDDCDSTG----GGGTLQIWRMSDLIYRPQDEVLAE---LEKFKAHVISCTSKP  496 (496)
Q Consensus       449 ~s~d~~sgg----~Dg~i~iw~~~~~~~~~~~~~~~~---l~~h~~~v~~~~~sP  496 (496)
                      ..     .+    .+++|.|||+.+.......-.+..   +..+...+..++|+|
T Consensus       439 ~~-----~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  488 (543)
T 1nir_A          439 TT-----FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK  488 (543)
T ss_dssp             CT-----TCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred             cC-----CCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence            20     01    157999999985421101111222   345677899999987

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=2.3e-21  Score=184.48  Aligned_cols=261  Identities=11%  Similarity=0.194  Sum_probs=176.0

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCC-CcEEEEeCC--CCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDS-PDVLIWDVE--AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  209 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~  209 (496)
                      ....+.|.+.+.+++|+| ++++|++++.+ +.|.+|++.  ++.          .+....+..+.  .+..++|+|+++
T Consensus        30 ~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~----------~~~~~~~~~~~--~~~~~~~s~dg~   96 (343)
T 1ri6_A           30 LTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGA----------LTFAAESALPG--SLTHISTDHQGQ   96 (343)
T ss_dssp             EEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCC----------EEEEEEEECSS--CCSEEEECTTSS
T ss_pred             EeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCc----------eeeccccccCC--CCcEEEEcCCCC
Confidence            445567888999999999 77777777765 999999997  331          12233444443  468999999999


Q ss_pred             ceEEec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          210 YVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       210 ~l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      +|++++ .++.|.+||+..+..                                     ......+.. ...+.+++|+|
T Consensus        97 ~l~~~~~~~~~i~~~d~~~~~~-------------------------------------~~~~~~~~~-~~~~~~~~~s~  138 (343)
T 1ri6_A           97 FVFVGSYNAGNVSVTRLEDGLP-------------------------------------VGVVDVVEG-LDGCHSANISP  138 (343)
T ss_dssp             EEEEEETTTTEEEEEEEETTEE-------------------------------------EEEEEEECC-CTTBCCCEECT
T ss_pred             EEEEEecCCCeEEEEECCCCcc-------------------------------------ccccccccC-CCCceEEEECC
Confidence            776655 588999999842110                                     001122222 34588999999


Q ss_pred             CCCceEEEEcCCCeEEEEEccC-CCccce---eeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCC
Q 010997          289 SSAQEFCSVGDDSCLILWDARV-GTSPVI---KVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~-~~~~~~---~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~  363 (496)
                      ++..+++++..++.|.+||+.+ ++....   .........+.+++|+| ++.++ +++..++.|.+||+....    +.
T Consensus       139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-dg~~l~~~~~~~~~i~~~~~~~~~----g~  213 (343)
T 1ri6_A          139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPH----GN  213 (343)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTT----SC
T ss_pred             CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC-CCCEEEEEeCCCCEEEEEEecCCC----Cc
Confidence            9944444444899999999987 441111   11222345788999999 78755 455589999999996421    22


Q ss_pred             C--ceEec----cC--CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcce
Q 010997          364 P--INKFE----GH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVD  435 (496)
Q Consensus       364 ~--~~~~~----~h--~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  435 (496)
                      .  ...+.    ++  ...+..++|+|+++++++++..++.|.+||+...+           .....+.....+.. +.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~-----------~~~~~~~~~~~~~~-~~~  281 (343)
T 1ri6_A          214 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG-----------SVLSKEGFQPTETQ-PRG  281 (343)
T ss_dssp             CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS-----------CCEEEEEEEECSSS-CCC
T ss_pred             EEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCC-----------CceEEeeeecCCCc-cce
Confidence            1  22222    11  34577899999999887777789999999997421           11133444444444 899


Q ss_pred             EEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ++|+|++.+++++...       |+.|.+|++.
T Consensus       282 ~~~s~dg~~l~~~~~~-------~~~v~v~~~d  307 (343)
T 1ri6_A          282 FNVDHSGKYLIAAGQK-------SHHISVYEIV  307 (343)
T ss_dssp             EEECTTSSEEEEECTT-------TCEEEEEEEE
T ss_pred             EEECCCCCEEEEecCC-------CCeEEEEEEc
Confidence            9999999888765444       4999999665

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=1.1e-22  Score=205.47  Aligned_cols=262  Identities=9%  Similarity=0.055  Sum_probs=194.5

Q ss_pred             EecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec-
Q 010997          147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI-  225 (496)
Q Consensus       147 ~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~-  225 (496)
                      +++| ++.++++++.|++|.+||..++            +...++..+..  +.+++|+|+|++|++++.|++|.+||+ 
T Consensus       144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~------------~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~  208 (543)
T 1nir_A          144 DLDL-PNLFSVTLRDAGQIALVDGDSK------------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLW  208 (543)
T ss_dssp             CCCG-GGEEEEEEGGGTEEEEEETTTC------------CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             ccCC-CCEEEEEEcCCCeEEEEECCCc------------eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECc
Confidence            4788 7789999999999999999888            55667774433  689999999999999999999999999 


Q ss_pred             -CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc----CCCceEEEEc-C
Q 010997          226 -QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP----SSAQEFCSVG-D  299 (496)
Q Consensus       226 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~~~~l~s~~-~  299 (496)
                       .+...                                        +..+. +...+..++|+|    ++ .++++++ .
T Consensus       209 ~~t~~~----------------------------------------~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~  246 (543)
T 1nir_A          209 AKEPTK----------------------------------------VAEIK-IGIEARSVESSKFKGYED-RYTIAGAYW  246 (543)
T ss_dssp             SSSCEE----------------------------------------EEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEE
T ss_pred             CCCCcE----------------------------------------EEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEcc
Confidence             43221                                        23344 345679999999    98 5666665 5


Q ss_pred             CCeEEEEEccCCCccceeeecc----------C-CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce--
Q 010997          300 DSCLILWDARVGTSPVIKVEKA----------H-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN--  366 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~----------~-~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~--  366 (496)
                      +++|.+||..+.+  .+..+..          | ...+.++.++|....++++...++.|.+||+..      ...+.  
T Consensus       247 ~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~------~~~l~~~  318 (543)
T 1nir_A          247 PPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD------IDNLTVT  318 (543)
T ss_dssp             SSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT------SSSCEEE
T ss_pred             CCeEEEEeccccc--cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC------CCcceeE
Confidence            8999999998877  3444332          2 237899999995567788888999999999987      33333  


Q ss_pred             EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC----CCCCcceEEecCCC
Q 010997          367 KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG----HRDKVVDFHWNASD  442 (496)
Q Consensus       367 ~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~~~~~p~~  442 (496)
                      .+. +...+..++|+|+++++++++..++.|.+||+.+.               +++..+..    |.+....+ ++|++
T Consensus       319 ~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---------------~l~~~i~~g~~ph~g~g~~~-~~p~~  381 (543)
T 1nir_A          319 SIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---------------RLSALVDVGKTPHPGRGANF-VHPKY  381 (543)
T ss_dssp             EEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---------------EEEEEEECSSSBCCTTCEEE-EETTT
T ss_pred             Eec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---------------eEEEeeccCCCCCCCCCccc-CCCCC
Confidence            443 56678899999999988877777999999999884               33333332    54433333 47876


Q ss_pred             CcEEEEecCCCCCCCCCCeEEEeecCCCCc-CCchHHHHHHHhccceEEEeccCC
Q 010997          443 PWTVVSVSDDCDSTGGGGTLQIWRMSDLIY-RPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       443 ~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~-~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ..++++.+.      .|++|.||++...-. ....++++++.+|.+.+..++|||
T Consensus       382 g~~~~s~~~------~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p  430 (543)
T 1nir_A          382 GPVWSTSHL------GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP  430 (543)
T ss_dssp             EEEEEEEBS------SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred             ccEEEeccC------CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence            677776542      258999999983110 111678888999988889999987

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=1.9e-22  Score=198.27  Aligned_cols=223  Identities=11%  Similarity=0.100  Sum_probs=158.5

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCC----CCCCCceEEecCCCCcceeeeecCCCCceE---
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGA----TNSRPDLILTGHQDNAEFALAMCPTEPYVL---  212 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~---  212 (496)
                      ...++.+++++ ++.++++++.+| ++||+.............    ....+...+ .|.. .|.+++|+|++++|+   
T Consensus        36 ~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~l~~spdg~~lav~~  111 (434)
T 2oit_A           36 KERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKF-PIHHLALSCDNLTLSACM  111 (434)
T ss_dssp             CSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSS-CEEEEEECTTSCEEEEEE
T ss_pred             CCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCC-cccEEEEcCCCCEEEEEE
Confidence            34589999999 777888999887 999886432111000000    000111122 2333 699999999999999   


Q ss_pred             -EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          213 -SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       213 -sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                       +|+.|++|+|||+.+....... .                            .........+.+|...|.+++|+|+++
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~-~----------------------------~~~~~~~~~~~~h~~~V~~v~~~p~~~  162 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQ-Q----------------------------KRPFAYHKLLKDAGGMVIDMKWNPTVP  162 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCS-S----------------------------CCCSEEEECCCSGGGSEEEEEECSSCT
T ss_pred             eccCCCceEEEEEccccccCCcC-C----------------------------cceeeeeeccCCCCCceEEEEECCCCC
Confidence             8999999999998754110000 0                            000111345667999999999999855


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc-
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-  370 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~-  370 (496)
                      .+|++++.||+|++||++++.  .......|...|.+++|+| ++.+|++|+.||.|++||++.       .....+.. 
T Consensus       163 ~~las~s~Dg~v~iwD~~~~~--~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~-------~~~~~~~~~  232 (434)
T 2oit_A          163 SMVAVCLADGSIAVLQVTETV--KVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL-------QEKKVIPCP  232 (434)
T ss_dssp             TEEEEEETTSCEEEEEESSSE--EEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC-------CEEEEECCC
T ss_pred             CEEEEEECCCeEEEEEcCCCc--ceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC-------cccccccCC
Confidence            899999999999999999875  3444557889999999999 899999999999999999983       23333333 


Q ss_pred             ------CCCCEEEEEEcCCCCCEEEEEeCCCc------EEEEECCCC
Q 010997          371 ------HSAAVLCVQWSPDKSSVFGSSAEDGL------LNIWDYEKV  405 (496)
Q Consensus       371 ------h~~~i~~l~~sp~~~~llas~~~dg~------i~iwd~~~~  405 (496)
                            |...|.+++|++++.++++.+..||.      +++|++++.
T Consensus       233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          233 PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                  33489999999988766555555543      899999874

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=9.8e-22  Score=188.07  Aligned_cols=265  Identities=9%  Similarity=0.042  Sum_probs=191.3

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeC-------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTD-------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  209 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~  209 (496)
                      ......+..++|+| +++.+++++.       ++.|.+||..++            +....+....  .+.+++|+|+++
T Consensus        37 ~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~v~~~d~~~~------------~~~~~~~~~~--~~~~~~~s~dg~  101 (353)
T 3vgz_A           37 KAVGKGAYEMAYSQ-QENALWLATSQSRKLDKGGVVYRLDPVTL------------EVTQAIHNDL--KPFGATINNTTQ  101 (353)
T ss_dssp             EEEESSEEEEEEET-TTTEEEEEECCCTTTEESEEEEEECTTTC------------CEEEEEEESS--CCCSEEEETTTT
T ss_pred             hhhccCccceEECC-CCCEEEEEcCCCcCCCCCccEEEEcCCCC------------eEEEEEecCC--CcceEEECCCCC
Confidence            34556788999999 6666666653       568999999887            4444444433  367999999998


Q ss_pred             c-eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC---------C
Q 010997          210 Y-VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE---------D  279 (496)
Q Consensus       210 ~-l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~  279 (496)
                      + ++++..++.|.+||..++....                                        .+..+.         .
T Consensus       102 ~l~v~~~~~~~v~~~d~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~  141 (353)
T 3vgz_A          102 TLWFGNTVNSAVTAIDAKTGEVKG----------------------------------------RLVLDDRKRTEEVRPL  141 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEE----------------------------------------EEESCCCCCCSSCCCC
T ss_pred             EEEEEecCCCEEEEEeCCCCeeEE----------------------------------------EEecCCCccccccCCC
Confidence            5 4556668999999998654321                                        111111         1


Q ss_pred             ceeEEEEccCCCceEEEE-cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          280 TVEDVTFCPSSAQEFCSV-GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      .+.+++|+|++..+++++ +.++.|.+||+.+++  ....+..+...+.+++|+| ++.++++++.++.|.+||+.+   
T Consensus       142 ~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~---  215 (353)
T 3vgz_A          142 QPRELVADDATNTVYISGIGKESVIWVVDGGNIK--LKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTAD---  215 (353)
T ss_dssp             EEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE--EEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTT---
T ss_pred             CCceEEECCCCCEEEEEecCCCceEEEEcCCCCc--eEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCC---
Confidence            368899999995444444 358999999998876  4555544666789999999 899999999999999999998   


Q ss_pred             CCCCCCceEecc----CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997          359 NGVGSPINKFEG----HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  434 (496)
Q Consensus       359 ~~~~~~~~~~~~----h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  434 (496)
                         +..+..+..    +...+..++|+|++.+++++...++.|.+||+...               ..+.......  ..
T Consensus       216 ---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---------------~~~~~~~~~~--~~  275 (353)
T 3vgz_A          216 ---NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---------------NILAKVAAPE--SL  275 (353)
T ss_dssp             ---TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---------------CEEEEEECSS--CC
T ss_pred             ---CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---------------cEEEEEEcCC--Cc
Confidence               666666553    56678899999999988777777799999999774               2222222222  26


Q ss_pred             eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          435 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       435 ~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .++|+|++.+++++...+       +.|.+||+.      +++.+..+... ..+.+++|+|
T Consensus       276 ~~~~s~dg~~l~v~~~~~-------~~v~~~d~~------~~~~~~~~~~~-~~~~~~~~s~  323 (353)
T 3vgz_A          276 AVLFNPARNEAYVTHRQA-------GKVSVIDAK------SYKVVKTFDTP-THPNSLALSA  323 (353)
T ss_dssp             CEEEETTTTEEEEEETTT-------TEEEEEETT------TTEEEEEEECC-SEEEEEEECT
T ss_pred             eEEECCCCCEEEEEECCC-------CeEEEEECC------CCeEEEEEecC-CCCCeEEEcC
Confidence            799999999888765544       999999998      45555555433 3568888876

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=8e-21  Score=182.60  Aligned_cols=325  Identities=9%  Similarity=0.026  Sum_probs=203.2

Q ss_pred             ceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCC
Q 010997           83 NRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDS  162 (496)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~d  162 (496)
                      ..+.+|+|+++.+ ....++++.+....                  ..+...... |...+..++|+| ++++|++++.+
T Consensus        12 ~~~~~~vg~y~~~-~~~~i~~~~~d~~~------------------g~~~~~~~~-~~~~p~~l~~sp-dg~~l~~~~~~   70 (361)
T 3scy_A           12 SELTMLVGTYTSG-NSKGIYTFRFNEET------------------GESLPLSDA-EVANPSYLIPSA-DGKFVYSVNEF   70 (361)
T ss_dssp             GEEEEEEEECCSS-SCCEEEEEEEETTT------------------CCEEEEEEE-ECSCCCSEEECT-TSSEEEEEECC
T ss_pred             CceEEEEEeccCC-CCCCEEEEEEeCCC------------------CCEEEeecc-cCCCCceEEECC-CCCEEEEEEcc
Confidence            3589999999875 46778888765311                  112233334 778889999999 78888888875


Q ss_pred             ----CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec-CCCcEEEEecCCccccccCCcc
Q 010997          163 ----PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDKSVVLWSIQDHITSSATDPA  237 (496)
Q Consensus       163 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~-~Dg~i~iwd~~~~~~~~~~~~~  237 (496)
                          +.|.+|++......        .+.+.....+.. ....+++  ++++|++++ .++.|.+|++............
T Consensus        71 ~~~~~~v~~~~~~~~~g~--------~~~~~~~~~~~~-~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~  139 (361)
T 3scy_A           71 SKDQAAVSAFAFDKEKGT--------LHLLNTQKTMGA-DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV  139 (361)
T ss_dssp             SSTTCEEEEEEEETTTTE--------EEEEEEEECSSS-CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE
T ss_pred             CCCCCcEEEEEEeCCCCc--------EEEeeEeccCCC-CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee
Confidence                79999998763100        112223333333 3456777  777666655 6889999999743211100000


Q ss_pred             ccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc----
Q 010997          238 TAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS----  313 (496)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----  313 (496)
                        ....+.                     ..   .....+...+.+++|+|++..+++++..++.|.+|++.....    
T Consensus       140 --~~~~g~---------------------~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~  193 (361)
T 3scy_A          140 --IEFKGS---------------------GP---DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNK  193 (361)
T ss_dssp             --EECCCC---------------------CS---CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred             --EEccCC---------------------CC---CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence              000000                     00   000112345788999999954666666789999999876542    


Q ss_pred             c-c------eeeeccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCC--ceEe---ccCCCCEEEEEE
Q 010997          314 P-V------IKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSP--INKF---EGHSAAVLCVQW  380 (496)
Q Consensus       314 ~-~------~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~--~~~~---~~h~~~i~~l~~  380 (496)
                      . .      ......+...+..++|+| ++.++++++ .++.|.+||+..      +..  +..+   ..+...+..++|
T Consensus       194 ~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~------g~~~~~~~~~~~~~~~~~~~~i~~  266 (361)
T 3scy_A          194 EKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYAD------GMLDEIQTVAADTVNAQGSGDIHL  266 (361)
T ss_dssp             CCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEET------TEEEEEEEEESCSSCCCCEEEEEE
T ss_pred             cceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecC------CceEEeEEEecCCCCCCCcccEEE
Confidence            1 1      122234556788999999 888776665 689999999985      322  2222   233456789999


Q ss_pred             cCCCCCEEEEEeC-CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCC
Q 010997          381 SPDKSSVFGSSAE-DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG  459 (496)
Q Consensus       381 sp~~~~llas~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~D  459 (496)
                      +|+|++|+++... ++.|.+|++....           .....+..... ...+.+++|+|++.+++++...+       
T Consensus       267 spdg~~l~v~~~~~~~~i~v~~~~~~~-----------g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~-------  327 (361)
T 3scy_A          267 SPDGKYLYASNRLKADGVAIFKVDETN-----------GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT-------  327 (361)
T ss_dssp             CTTSSEEEEEECSSSCEEEEEEECTTT-----------CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT-------
T ss_pred             CCCCCEEEEECCCCCCEEEEEEEcCCC-----------CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC-------
Confidence            9999987666666 6899999996311           11123333333 45688999999999888765444       


Q ss_pred             CeEEEeecCCCCcCCchHHHHHH-HhccceEEEeccC
Q 010997          460 GTLQIWRMSDLIYRPQDEVLAEL-EKFKAHVISCTSK  495 (496)
Q Consensus       460 g~i~iw~~~~~~~~~~~~~~~~l-~~h~~~v~~~~~s  495 (496)
                      +.|.+|++...    ++++.... ..+...+.+++|.
T Consensus       328 ~~v~v~~~d~~----~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          328 NVIQIFERDQA----TGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TEEEEEEECTT----TCCEEECSCCEECSSEEEEEEE
T ss_pred             CCEEEEEEECC----CCcEeecceeeeCCCCeEEEEc
Confidence            89999877521    23322221 1234567888875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.89  E-value=5.2e-21  Score=181.43  Aligned_cols=248  Identities=9%  Similarity=0.069  Sum_probs=173.8

Q ss_pred             cCCCceeEEEecCCCCc-EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCC-ceEEecCCCCcceeeeecCCCCceEEec
Q 010997          138 IHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRP-DLILTGHQDNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~-~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~l~~h~~~~v~~l~~~p~~~~l~sg~  215 (496)
                      .+...+ .++|+| +++ +++++..++.|.+||+.++            +. ...+..+.. +..+++|+|++++|+++.
T Consensus        38 ~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~  102 (331)
T 3u4y_A           38 LGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLE------------PPKVVAIQEGQS-SMADVDITPDDQFAVTVT  102 (331)
T ss_dssp             CCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSS------------SCEEEEEEECSS-CCCCEEECTTSSEEEECC
T ss_pred             ccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCC------------ceeEEecccCCC-CccceEECCCCCEEEEec
Confidence            345556 999999 665 5555555899999999887            33 445555554 444599999999998665


Q ss_pred             CCC---cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          216 KDK---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       216 ~Dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      .++   .|.+||+.++...                                        ..+.. .....+++|+|++..
T Consensus       103 ~~~~~~~i~v~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~~spdg~~  141 (331)
T 3u4y_A          103 GLNHPFNMQSYSFLKNKFI----------------------------------------STIPI-PYDAVGIAISPNGNG  141 (331)
T ss_dssp             CSSSSCEEEEEETTTTEEE----------------------------------------EEEEC-CTTEEEEEECTTSSC
T ss_pred             CCCCcccEEEEECCCCCeE----------------------------------------EEEEC-CCCccceEECCCCCE
Confidence            553   8999999764321                                        22222 334689999999955


Q ss_pred             eEEEEcCCCe-EEEEEccCCCccce--eeeccCCCCeEEEEecCCCCcE-EEEEcCCCcEEEEeCCCCCCCCCCCC---c
Q 010997          293 EFCSVGDDSC-LILWDARVGTSPVI--KVEKAHDADLHCVDWNPLDDNL-ILTGSADNSVRMFDRRNLTSNGVGSP---I  365 (496)
Q Consensus       293 ~l~s~~~dg~-i~iwd~~~~~~~~~--~~~~~~~~~v~~i~~sp~~~~~-l~sgs~dg~i~iwd~~~~~~~~~~~~---~  365 (496)
                      ++++...++. |.+|++........  .........+..++|+| ++.+ ++++..++.|.+||+.+      +..   +
T Consensus       142 l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~~------~~~~~~~  214 (331)
T 3u4y_A          142 LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP-DGNFAFVANLIGNSIGILETQN------PENITLL  214 (331)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT-TSSEEEEEETTTTEEEEEECSS------TTSCEEE
T ss_pred             EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC-CCCEEEEEeCCCCeEEEEECCC------Cccccee
Confidence            6666677788 99999986442110  11123456689999999 7874 55666789999999987      566   6


Q ss_pred             eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC----CC---CcceEEe
Q 010997          366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH----RD---KVVDFHW  438 (496)
Q Consensus       366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~---~V~~~~~  438 (496)
                      ..+.. ...+..++|+|++++++++...++.|.+||+.+...             ..+.....+    ..   ....++|
T Consensus       215 ~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~  280 (331)
T 3u4y_A          215 NAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-------------SFVKSFGHGLLIDPRPLFGANQMAL  280 (331)
T ss_dssp             EEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE-------------EEEEEEECCCCCCCGGGTTCCCEEE
T ss_pred             eeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce-------------eeecccccccccCCCCcccccceEE
Confidence            66664 466789999999998777766788999999987411             111111111    11   2356899


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      +|++.++++++.++       +.|.+|++..
T Consensus       281 spdg~~l~v~~~~~-------~~v~v~d~~~  304 (331)
T 3u4y_A          281 NKTETKLFISANIS-------RELKVFTISG  304 (331)
T ss_dssp             CTTSSEEEEEETTT-------TEEEEEETTS
T ss_pred             CCCCCEEEEecCCC-------CcEEEEEecC
Confidence            99999888766554       8999999984

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=1.9e-22  Score=187.46  Aligned_cols=255  Identities=13%  Similarity=0.092  Sum_probs=178.2

Q ss_pred             EEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCC-ccccccCCc
Q 010997          158 THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD-HITSSATDP  236 (496)
Q Consensus       158 t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~  236 (496)
                      +++.++.|++||+.++            +. ..+..|.. .|.+++|+|++++|++++ ++.|.+||+.+ +...     
T Consensus        17 ~~~~~~~i~~~d~~~~------------~~-~~~~~~~~-~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-----   76 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR------------KM-RVVWQTPE-LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-----   76 (297)
T ss_dssp             -CCCCEEEEEEETTTT------------EE-EEEEEESS-CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-----
T ss_pred             CCCcceeEEEEeCCCC------------ce-eeeccCCc-ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-----
Confidence            4567899999999876            22 24555665 689999999999999987 88999999976 4321     


Q ss_pred             cccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-CCceeEEEEccCCCceEEEEc--CCCeEEEEEccCCCc
Q 010997          237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVG--DDSCLILWDARVGTS  313 (496)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~  313 (496)
                                                         .....+ ...+.+++|+|++ ..|++++  .++.+.||.+.....
T Consensus        77 -----------------------------------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~  120 (297)
T 2ojh_A           77 -----------------------------------KVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGG  120 (297)
T ss_dssp             -----------------------------------ECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCC
T ss_pred             -----------------------------------EeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCC
Confidence                                               222233 3678899999999 6777777  445566665543221


Q ss_pred             cceeeeccCCCCeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997          314 PVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       314 ~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~  392 (496)
                      . ...+ .+...+.+++|+| ++.+|+ +++.++.++||++...     ......+..+...+.+++|+|++..+++++.
T Consensus       121 ~-~~~~-~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          121 T-PRLM-TKNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDID-----SGVETRLTHGEGRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             C-CEEC-CSSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETT-----TCCEEECCCSSSCEEEEEECTTSSEEEEEEC
T ss_pred             c-eEEe-ecCCCccceEECC-CCCEEEEEECCCCceEEEEEECC-----CCcceEcccCCCccccceECCCCCEEEEEec
Confidence            1 2333 2334589999999 787766 7888999999997542     2445667778889999999999997665665


Q ss_pred             CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC-----CCCeEEEeec
Q 010997          393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG-----GGGTLQIWRM  467 (496)
Q Consensus       393 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg-----~Dg~i~iw~~  467 (496)
                      .++.++||++...+              ..+..+..|...+..++|+|++.+++++..++  ...     .++.|++|++
T Consensus       193 ~~~~~~i~~~~~~~--------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~~~~~~~~~~~l~~~d~  256 (297)
T 2ojh_A          193 RTGQMQIWRVRVDG--------------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDA--DVFDHPRDLDVRVQLMDM  256 (297)
T ss_dssp             TTSSCEEEEEETTS--------------SCEEECCCCSEEEEEEEECTTSSEEEEEEEET--TCCSCCSSEEEEEEEEET
T ss_pred             CCCCccEEEECCCC--------------CCcEEEecCCcccCCeEECCCCCEEEEEEcCC--CCCcccccCceEEEEEec
Confidence            69999999987421              22344566777889999999998776554432  000     2367999999


Q ss_pred             CCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          468 SDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       468 ~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ...    ....+..+.+|...|..++|+|
T Consensus       257 ~~~----~~~~~~~~~~~~~~~~~~~~sp  281 (297)
T 2ojh_A          257 DGG----NVETLFDLFGGQGTMNSPNWSP  281 (297)
T ss_dssp             TSC----SCEEEEEEEESTTTSCSCCBCT
T ss_pred             CCC----CceeeeccCCCCcccccceECC
Confidence            832    1112333446777888899987

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=4.1e-22  Score=210.36  Aligned_cols=263  Identities=11%  Similarity=0.103  Sum_probs=183.6

Q ss_pred             CCceeEEEecCCCCcEEEEEeC-CC-----cEEEEeCCCCCCccccCCCCCCCCceEEecCCC-----------------
Q 010997          140 PGEVNRIRELPQNTKIVATHTD-SP-----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----------------  196 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~-----------------  196 (496)
                      ...|.+++|+| ++++||+++. ||     .|++||+.++.            ....+..+..                 
T Consensus        36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (741)
T 2ecf_A           36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQ------------TRLLVDSKVVLPGTETLSDEEKARRER  102 (741)
T ss_dssp             CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCC------------EEEEECGGGTC----------------
T ss_pred             CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCc------------eeEccchhhcccccccccchhhhhhhh
Confidence            45699999999 8899999988 88     89999998873            2223322221                 


Q ss_pred             ------CcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997          197 ------NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  270 (496)
Q Consensus       197 ------~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (496)
                            ..|.+++|+|||++|++++. +.|.+||+.++...                                      .
T Consensus       103 ~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~--------------------------------------~  143 (741)
T 2ecf_A          103 QRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA--------------------------------------A  143 (741)
T ss_dssp             ----CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT--------------------------------------S
T ss_pred             hhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc--------------------------------------e
Confidence                  13789999999999999886 99999999764100                                      0


Q ss_pred             eeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCC----------------eEEEEecCC
Q 010997          271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD----------------LHCVDWNPL  334 (496)
Q Consensus       271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------v~~i~~sp~  334 (496)
                      ...+..|...+.+++|+|+| ..|+.++ ++.|.+||+.++.  .......+...                +.+++|+| 
T Consensus       144 ~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~g~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-  218 (741)
T 2ecf_A          144 VRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLASGR--QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-  218 (741)
T ss_dssp             CCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTTTE--EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-
T ss_pred             EEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCCCC--EEEeccCCccceeccccceeeeeccccccceEECC-
Confidence            13345567789999999999 6777776 4699999998765  22222223222                47899999 


Q ss_pred             CCcEEEEEcCCC---------------------------------cEEEEeCCC-CCCCCCCCCceEec---cCCCCEEE
Q 010997          335 DDNLILTGSADN---------------------------------SVRMFDRRN-LTSNGVGSPINKFE---GHSAAVLC  377 (496)
Q Consensus       335 ~~~~l~sgs~dg---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~---~h~~~i~~  377 (496)
                      ++.+|++++.|+                                 .|.+||+.+ ..       ...+.   .|...+..
T Consensus       219 Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~~~~  291 (741)
T 2ecf_A          219 DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-------TQWIDLGKEQDIYLAR  291 (741)
T ss_dssp             TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-------CEEECCCSCSSEEEEE
T ss_pred             CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-------eEEecCCCCcceEEEE
Confidence            999999887765                                 788899875 32       22222   47788999


Q ss_pred             EEEcCCCCCEEEEEe----CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC----CcceEEecCCCCcEEEEe
Q 010997          378 VQWSPDKSSVFGSSA----EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD----KVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       378 l~~sp~~~~llas~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~V~~~~~~p~~~~l~~s~  449 (496)
                      ++| |+|+.|++++.    .+..|.+||+.+..               .......+..    .+..++|+|++. +++++
T Consensus       292 ~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---------------~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~  354 (741)
T 2ecf_A          292 VNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---------------QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSS  354 (741)
T ss_dssp             EEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---------------EEEEEEEECSSCCCCCSCCEECTTSC-EEEEE
T ss_pred             EEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---------------eEEEEEcCCCCcCCcCCceEECCCCe-EEEEe
Confidence            999 99997654443    35679999998741               1112222222    457899999988 66655


Q ss_pred             cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEe-ccCC
Q 010997          450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISC-TSKP  496 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~-~~sP  496 (496)
                      +.       ||.++||.+..     .+. ...+..|...|.++ +|+|
T Consensus       355 ~~-------~g~~~l~~~~~-----~~~-~~~l~~~~~~v~~~~~~s~  389 (741)
T 2ecf_A          355 ER-------TGFQHLYRIDS-----KGK-AAALTHGNWSVDELLAVDE  389 (741)
T ss_dssp             CT-------TSSCEEEEECS-----SSC-EEESCCSSSCEEEEEEEET
T ss_pred             cC-------CCccEEEEEcC-----CCC-eeeeeecceEEEeEeEEeC
Confidence            44       48888887762     123 55666777777776 4776

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=8e-22  Score=208.19  Aligned_cols=272  Identities=13%  Similarity=0.082  Sum_probs=187.8

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  220 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i  220 (496)
                      ..|.+++|+| ++++|++++. +.|++||+.++..          .....+..|.. .+.+++|+|||++|++++ ++.|
T Consensus       109 ~~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~----------~~~~~l~~~~~-~~~~~~~SPDG~~la~~~-~~~i  174 (741)
T 2ecf_A          109 TGIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGK----------AAVRQLTHGEG-FATDAKLSPKGGFVSFIR-GRNL  174 (741)
T ss_dssp             EESCCCEECT-TSSEEEEEET-TEEEEEESSSCST----------TSCCBCCCSSS-CEEEEEECTTSSEEEEEE-TTEE
T ss_pred             cCcceeEECC-CCCEEEEEeC-CcEEEEECCCCCc----------ceEEEcccCCc-ccccccCCCCCCEEEEEe-CCcE
Confidence            4589999999 8888888886 8999999987610          01223455655 588999999999999887 5699


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC--------CCceeEEEEccCCCc
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH--------EDTVEDVTFCPSSAQ  292 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--------~~~v~~l~~~~~~~~  292 (496)
                      .+||+.++........       ..                         .....++        ...+.++.|+|++ .
T Consensus       175 ~~~d~~~g~~~~~~~~-------~~-------------------------~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~  221 (741)
T 2ecf_A          175 WVIDLASGRQMQLTAD-------GS-------------------------TTIGNGIAEFVADEEMDRHTGYWWAPDD-S  221 (741)
T ss_dssp             EEEETTTTEEEECCCC-------CC-------------------------SSEEESCCCHHHHHHSCCCCSEEECTTS-S
T ss_pred             EEEecCCCCEEEeccC-------Cc-------------------------cceeccccceeeeeccccccceEECCCC-C
Confidence            9999986543211100       00                         0001111        1235789999999 6


Q ss_pred             eEEEEcCCC---------------------------------eEEEEEccC-CCccceeeec--cCCCCeEEEEecCCCC
Q 010997          293 EFCSVGDDS---------------------------------CLILWDARV-GTSPVIKVEK--AHDADLHCVDWNPLDD  336 (496)
Q Consensus       293 ~l~s~~~dg---------------------------------~i~iwd~~~-~~~~~~~~~~--~~~~~v~~i~~sp~~~  336 (496)
                      .|++++.|+                                 .|.+||+.+ ++  ......  .|...+..++| | ++
T Consensus       222 ~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~-p-Dg  297 (741)
T 2ecf_A          222 AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ--TQWIDLGKEQDIYLARVNW-R-DP  297 (741)
T ss_dssp             CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC--CEEECCCSCSSEEEEEEEE-E-ET
T ss_pred             EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc--eEEecCCCCcceEEEEEEe-C-CC
Confidence            777776655                                 788999987 76  222221  47788999999 9 89


Q ss_pred             cEEEEEcC-----CCcEEEEeCCCCCCCCCCCCceEeccCCC----CEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCc
Q 010997          337 NLILTGSA-----DNSVRMFDRRNLTSNGVGSPINKFEGHSA----AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK  407 (496)
Q Consensus       337 ~~l~sgs~-----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~----~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~  407 (496)
                      .+|++++.     +..|.+||+.+      +.....+..+..    .+..++|+|+|+ ++++++.||.++||.+...+ 
T Consensus       298 ~~l~~~~~~~~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~-  369 (741)
T 2ecf_A          298 QHLSFQRQSRDQKKLDLVEVTLAS------NQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKG-  369 (741)
T ss_dssp             TEEEEEEEETTSSEEEEEEEETTT------CCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSS-
T ss_pred             CEEEEEEecccCCeEEEEEEECCC------CceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCC-
Confidence            98887654     56899999988      565555554443    456899999999 67788889988898876421 


Q ss_pred             ccCCCCCCCCCCCeeEEEecCCCCCcceE-EecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc
Q 010997          408 KVEQGPRTTNYPAGLFFQHAGHRDKVVDF-HWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  486 (496)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~-~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~  486 (496)
                                   . ...+..|...|..+ .|+|++..++++++.+     ....++||++..     .+..+..+.. .
T Consensus       370 -------------~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~-----~~~~~~l~~~~~-----~g~~~~~l~~-~  424 (741)
T 2ecf_A          370 -------------K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIE-----SARESQIYAVPL-----QGGQPQRLSK-A  424 (741)
T ss_dssp             -------------C-EEESCCSSSCEEEEEEEETTTTEEEEEECSS-----CTTCBEEEEEET-----TCCCCEECCC-S
T ss_pred             -------------C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCC-----CCceEEEEEEEc-----CCCCeeeccc-C
Confidence                         2 34456677778887 5999998887766544     112899999862     1222333443 4


Q ss_pred             ceEEEeccCC
Q 010997          487 AHVISCTSKP  496 (496)
Q Consensus       487 ~~v~~~~~sP  496 (496)
                      ..+.+++|||
T Consensus       425 ~~~~~~~~sp  434 (741)
T 2ecf_A          425 PGMHSASFAR  434 (741)
T ss_dssp             CSEEEEEECT
T ss_pred             CCceEEEECC
Confidence            5677888887

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=6e-21  Score=181.04  Aligned_cols=239  Identities=12%  Similarity=0.053  Sum_probs=169.1

Q ss_pred             EecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC-CCcEEEEec
Q 010997          147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DKSVVLWSI  225 (496)
Q Consensus       147 ~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-Dg~i~iwd~  225 (496)
                      .|.+..+.++++++.++.|.+||+.++            +....+..+.. .+ +++|+|++++|++++. ++.|.+||+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~-~~-~~~~s~dg~~l~~~~~~~~~i~~~d~   69 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTL------------EILNQITLGYD-FV-DTAITSDCSNVVVTSDFCQTLVQIET   69 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTC------------CEEEEEECCCC-EE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccc------------ceeeeEEccCC-cc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence            355546667889999999999999887            44445555544 45 9999999996665554 899999999


Q ss_pred             CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC---e
Q 010997          226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---C  302 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~  302 (496)
                      .++...                                       ...+..+..+..+++|+|++ .+++++..++   .
T Consensus        70 ~~~~~~---------------------------------------~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~  109 (331)
T 3u4y_A           70 QLEPPK---------------------------------------VVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFN  109 (331)
T ss_dssp             SSSSCE---------------------------------------EEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCE
T ss_pred             CCCcee---------------------------------------EEecccCCCCccceEECCCC-CEEEEecCCCCccc
Confidence            754320                                       24455556666669999999 5666555553   9


Q ss_pred             EEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCc-EEEEeCCCCCCCCCCCCc----eEeccCCCCEE
Q 010997          303 LILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNS-VRMFDRRNLTSNGVGSPI----NKFEGHSAAVL  376 (496)
Q Consensus       303 i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~-i~iwd~~~~~~~~~~~~~----~~~~~h~~~i~  376 (496)
                      |.+||+.+++  ..... .......+++|+| +++ +++++..++. |.+|++...      ..+    .........+.
T Consensus       110 i~v~d~~~~~--~~~~~-~~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~------g~~~~~~~~~~~~~~~~~  179 (331)
T 3u4y_A          110 MQSYSFLKNK--FISTI-PIPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDAD------GVLFDTGQEFISGGTRPF  179 (331)
T ss_dssp             EEEEETTTTE--EEEEE-ECCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTT------CCEEEEEEEEECSSSSEE
T ss_pred             EEEEECCCCC--eEEEE-ECCCCccceEECC-CCCEEEEEecCCCceEEEEEECCC------CcEeecCCccccCCCCcc
Confidence            9999998876  34444 3455679999999 776 5555566688 999999852      222    12223455689


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997          377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  456 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg  456 (496)
                      .++|+|+++++++++..++.|.+||+.....            ...+..+.. ...+..++|+|++.+++++...     
T Consensus       180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~------------~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~-----  241 (331)
T 3u4y_A          180 NITFTPDGNFAFVANLIGNSIGILETQNPEN------------ITLLNAVGT-NNLPGTIVVSRDGSTVYVLTES-----  241 (331)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEECSSTTS------------CEEEEEEEC-SSCCCCEEECTTSSEEEEECSS-----
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCcc------------cceeeeccC-CCCCceEEECCCCCEEEEEEcC-----
Confidence            9999999998887887899999999987411            111333333 3567899999999988775543     


Q ss_pred             CCCCeEEEeecCC
Q 010997          457 GGGGTLQIWRMSD  469 (496)
Q Consensus       457 g~Dg~i~iw~~~~  469 (496)
                        ++.|.+||+..
T Consensus       242 --~~~i~~~d~~~  252 (331)
T 3u4y_A          242 --TVDVFNFNQLS  252 (331)
T ss_dssp             --EEEEEEEETTT
T ss_pred             --CCEEEEEECCC
Confidence              48899999983

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=4.6e-21  Score=182.47  Aligned_cols=269  Identities=8%  Similarity=0.094  Sum_probs=171.6

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC-CcEEEEecC--Cc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-KSVVLWSIQ--DH  228 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D-g~i~iwd~~--~~  228 (496)
                      ...++++++.++.|++||+.....         .+.... ..|.. .+.+++|+|++++|++++.+ +.|.+|++.  ++
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~---------~~~~~~-~~~~~-~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~   72 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGA---------LTLTQV-VDVPG-QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG   72 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSC---------EEEEEE-EECSS-CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCc---------EEEeee-EecCC-CCceEEECCCCCEEEEeecCCCeEEEEEecCCCC
Confidence            344566668899999999964210         011222 23444 57899999999988888876 999999986  22


Q ss_pred             cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEc
Q 010997          229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA  308 (496)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~  308 (496)
                      ..                                      ..+..+..+. .+..++|+|++..+++++..++.|.+||+
T Consensus        73 ~~--------------------------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           73 AL--------------------------------------TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             CE--------------------------------------EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ce--------------------------------------eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence            11                                      1112333333 78899999999545556666899999999


Q ss_pred             cCCCc-cceeeeccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCce--Eecc-CCCCEEEEEEcCC
Q 010997          309 RVGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPIN--KFEG-HSAAVLCVQWSPD  383 (496)
Q Consensus       309 ~~~~~-~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~--~~~~-h~~~i~~l~~sp~  383 (496)
                      ..+.. ...... .....+.+++|+| ++.++++++ .++.|.+||+.....   ...+.  .+.. ....+..++|+|+
T Consensus       114 ~~~~~~~~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~pd  188 (343)
T 1ri6_A          114 EDGLPVGVVDVV-EGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH---LVAQDPAEVTTVEGAGPRHMVFHPN  188 (343)
T ss_dssp             ETTEEEEEEEEE-CCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC---EEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             CCCccccccccc-cCCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCc---eeeecccccccCCCCCcceEEECCC
Confidence            53221 122333 3445689999999 887777666 899999999986210   11111  2222 3457889999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec----CC--CCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997          384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA----GH--RDKVVDFHWNASDPWTVVSVSDDCDSTG  457 (496)
Q Consensus       384 ~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~h--~~~V~~~~~~p~~~~l~~s~s~d~~sgg  457 (496)
                      +.++++++..++.|.+||+.....           .........    ++  ...+..++|+|++.+++++...+     
T Consensus       189 g~~l~~~~~~~~~i~~~~~~~~~g-----------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-----  252 (343)
T 1ri6_A          189 EQYAYCVNELNSSVDVWELKDPHG-----------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----  252 (343)
T ss_dssp             SSEEEEEETTTTEEEEEESSCTTS-----------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----
T ss_pred             CCEEEEEeCCCCEEEEEEecCCCC-----------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC-----
Confidence            998777777899999999964211           011111111    11  23566899999999888766544     


Q ss_pred             CCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          458 GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       458 ~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                        +.|++|++....  ...+.+..+..+.. +..++|+|
T Consensus       253 --~~i~v~d~~~~~--~~~~~~~~~~~~~~-~~~~~~s~  286 (343)
T 1ri6_A          253 --SLITVFSVSEDG--SVLSKEGFQPTETQ-PRGFNVDH  286 (343)
T ss_dssp             --TEEEEEEECTTS--CCEEEEEEEECSSS-CCCEEECT
T ss_pred             --CEEEEEEEcCCC--CceEEeeeecCCCc-cceEEECC
Confidence              999999997310  01122223333333 66677765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.87  E-value=1.8e-21  Score=191.30  Aligned_cols=224  Identities=15%  Similarity=0.205  Sum_probs=154.0

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      .+..+++++++.+|++++.|+ |++|+............       ...                 ......+ .....+
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~-------~~~-----------------~~~~~~~-~~~~~~   91 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGD-------DPN-----------------KIVDKVQ-GLLVPM   91 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTC-------CTT-----------------CEEECCC-CEEECC
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccccc-------Ccc-----------------cccccCc-cccccC
Confidence            367899999999999999888 89988653211000000       000                 0000000 111246


Q ss_pred             CCceeEEEEccCCCceEE----EEcCCCeEEEEEccCC-----Cc--c--ceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997          278 EDTVEDVTFCPSSAQEFC----SVGDDSCLILWDARVG-----TS--P--VIKVEKAHDADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~----s~~~dg~i~iwd~~~~-----~~--~--~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~  344 (496)
                      ...|.+++|+|++ .+|+    +|+.|+.|+|||+++.     ..  +  ....+.+|...|.+++|+|.++.+|++++.
T Consensus        92 ~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           92 KFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             SSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            6789999999999 6777    8899999999999764     10  1  134456789999999999944899999999


Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  424 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  424 (496)
                      ||+|++||+++      +..+....+|...|.+++|+|+|.+ |++|+.||.|++||++. ...            ..+.
T Consensus       171 Dg~v~iwD~~~------~~~~~~~~~~~~~v~~v~wspdg~~-lasgs~dg~v~iwd~~~-~~~------------~~~~  230 (434)
T 2oit_A          171 DGSIAVLQVTE------TVKVCATLPSTVAVTSVCWSPKGKQ-LAVGKQNGTVVQYLPTL-QEK------------KVIP  230 (434)
T ss_dssp             TSCEEEEEESS------SEEEEEEECGGGCEEEEEECTTSSC-EEEEETTSCEEEECTTC-CEE------------EEEC
T ss_pred             CCeEEEEEcCC------CcceeeccCCCCceeEEEEcCCCCE-EEEEcCCCcEEEEccCC-ccc------------cccc
Confidence            99999999998      5556666778999999999999986 57999999999999982 110            0010


Q ss_pred             Ee----cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          425 QH----AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       425 ~~----~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .+    ..|...|.+++|++++.++++..+.|- .-.....+++|++..
T Consensus       231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg-~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG-TLETSPDVVMALLPK  278 (434)
T ss_dssp             CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC-CSSSCCEEEEEECCC
T ss_pred             CCcccCCCCceeEEEEEEecCceEEEEEccCCC-ccCCCCceEEEEecc
Confidence            01    123448999999997766555443320 001123599999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=5.4e-21  Score=201.26  Aligned_cols=280  Identities=10%  Similarity=0.008  Sum_probs=174.9

Q ss_pred             ceeEEEecCCCCcEEEEEeCC---------CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          142 EVNRIRELPQNTKIVATHTDS---------PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .|.+++|+| ++++||+++.+         +.|++||+.++..          +.+....+|.. .+..++|+|+|++|+
T Consensus        62 ~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------~~l~~~~~~~~-~~~~~~~SPdG~~la  129 (723)
T 1xfd_A           62 RAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP----------QSLDPPEVSNA-KLQYAGWGPKGQQLI  129 (723)
T ss_dssp             TCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC----------EECCCTTCCSC-CCSBCCBCSSTTCEE
T ss_pred             ccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCce----------EeccCCccccc-cccccEECCCCCEEE
Confidence            499999999 88899988764         7888999988731          11111223433 478999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC---------CceeE
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE---------DTVED  283 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~  283 (496)
                      +++. +.|.+||+.++........       +.                      ..  ..+.++.         ..+.+
T Consensus       130 ~~~~-~~i~~~~~~~g~~~~~~~~-------~~----------------------~~--~~~~g~~~~v~~ee~~~~~~~  177 (723)
T 1xfd_A          130 FIFE-NNIYYCAHVGKQAIRVVST-------GK----------------------EG--VIYNGLSDWLYEEEILKTHIA  177 (723)
T ss_dssp             EEET-TEEEEESSSSSCCEEEECC-------CB----------------------TT--TEEEEECCHHHHHTTSSSSEE
T ss_pred             EEEC-CeEEEEECCCCceEEEecC-------CC----------------------CC--ceECcccceeEEEEeccCcce
Confidence            9885 8999999986543211000       00                      00  0111111         13478


Q ss_pred             EEEccCCCceEEEEcCCC----------------------------------eEEEEEccCCCccceeeecc------CC
Q 010997          284 VTFCPSSAQEFCSVGDDS----------------------------------CLILWDARVGTSPVIKVEKA------HD  323 (496)
Q Consensus       284 l~~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~------~~  323 (496)
                      ++|+|+| ..|++++.|+                                  .|++||+.+++  ....+..      +.
T Consensus       178 ~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~--~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          178 HWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT--HDLEMMPPDDPRMRE  254 (723)
T ss_dssp             EEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC--CCEECCCCCCGGGSS
T ss_pred             EEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc--eeEEeeCCccCCCcc
Confidence            9999999 6777776543                                  79999998876  2233333      35


Q ss_pred             CCeEEEEecCCCCcEEEEEcC----CCcEEEEeCCCCCCCCCCCCceEecc-CCCCE----EEEEEcCCCCCEEEE-EeC
Q 010997          324 ADLHCVDWNPLDDNLILTGSA----DNSVRMFDRRNLTSNGVGSPINKFEG-HSAAV----LCVQWSPDKSSVFGS-SAE  393 (496)
Q Consensus       324 ~~v~~i~~sp~~~~~l~sgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~i----~~l~~sp~~~~llas-~~~  393 (496)
                      ..+..++|+| ++.+|++.+.    +..|.+||+.+      +.....+.. +...+    ..++|+|+|+.|+.. +..
T Consensus       255 ~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  327 (723)
T 1xfd_A          255 YYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATT------GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP  327 (723)
T ss_dssp             EEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTT------CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred             ceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCC------CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence            6789999999 8988877643    35799999987      555544433 33433    378999999987654 556


Q ss_pred             CC------cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc-eEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997          394 DG------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV-DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       394 dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~  466 (496)
                      ++      .|.+||+...+...            ....+..+...+. .++|+|++..+++++.++     ..+.++||+
T Consensus       328 ~~~~~~~~~l~~~d~~~~~~~~------------~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~~~~~l~~  390 (723)
T 1xfd_A          328 QGGRGKFYHITVSSSQPNSSND------------NIQSITSGDWDVTKILAYDEKGNKIYFLSTED-----LPRRRQLYS  390 (723)
T ss_dssp             CSSSSCEEEEEEECSSCCSSSC------------CCCBSCCSSSCEEEEEEEETTTTEEEEEESSS-----CTTCCEEEE
T ss_pred             cCCCcceeEEEEEeccCCCCcc------------ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC-----CCcceEEEE
Confidence            77      46667732222100            0011122222344 369999998877654432     127899999


Q ss_pred             cCCCCcCCchHHHHHHHh---ccceEEEeccCC
Q 010997          467 MSDLIYRPQDEVLAELEK---FKAHVISCTSKP  496 (496)
Q Consensus       467 ~~~~~~~~~~~~~~~l~~---h~~~v~~~~~sP  496 (496)
                      +...    .+.....+..   |...+..++|+|
T Consensus       391 ~~~~----~~~~~~~l~~~~~~~~~~~~~~~sp  419 (723)
T 1xfd_A          391 ANTV----GNFNRQCLSCDLVENCTYFSASFSH  419 (723)
T ss_dssp             ECSS----TTCCCBCSSTTSSSSCCCCEEEECT
T ss_pred             EeCC----CCCCcceecccccCCCCeEEEEECC
Confidence            8631    1111222332   566678888887

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.87  E-value=2.5e-21  Score=203.74  Aligned_cols=229  Identities=11%  Similarity=0.111  Sum_probs=162.1

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC--cceeeeecCCCCceEEecCC--
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--AEFALAMCPTEPYVLSGGKD--  217 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~--~v~~l~~~p~~~~l~sg~~D--  217 (496)
                      .+.+++|+| +++++++ +.||.|++||+.++            +....+.+|...  .|.+++|+|||++|++++.+  
T Consensus        18 ~~~~~~~sp-dg~~~~~-~~dg~i~~~d~~~g------------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~   83 (723)
T 1xfd_A           18 HDPEAKWIS-DTEFIYR-EQKGTVRLWNVETN------------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP   83 (723)
T ss_dssp             CCCCCCBSS-SSCBCCC-CSSSCEEEBCGGGC------------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred             cccccEEcC-CCcEEEE-eCCCCEEEEECCCC------------cEEEEeccccccccccceEEECCCCCEEEEEecCcc
Confidence            477889999 7777776 78999999999887            444556666531  37899999999999998764  


Q ss_pred             -------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          218 -------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       218 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                             +.|.+||+.++....                                      +....+|...+..++|+|+|
T Consensus        84 ~~~~~~~~~i~~~d~~~~~~~~--------------------------------------l~~~~~~~~~~~~~~~SPdG  125 (723)
T 1xfd_A           84 IYQHSYTGYYVLSKIPHGDPQS--------------------------------------LDPPEVSNAKLQYAGWGPKG  125 (723)
T ss_dssp             CSSSCCCSEEEEEESSSCCCEE--------------------------------------CCCTTCCSCCCSBCCBCSST
T ss_pred             ceeecceeeEEEEECCCCceEe--------------------------------------ccCCccccccccccEECCCC
Confidence                   788899998654210                                      01112345568899999999


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCC------------------eEEEEecCCCCcEEEEEcCCC------
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD------------------LHCVDWNPLDDNLILTGSADN------  346 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------------v~~i~~sp~~~~~l~sgs~dg------  346 (496)
                       ..|+.++. +.|++||+.++.  .......+...                  +.+++|+| ++..|++++.|+      
T Consensus       126 -~~la~~~~-~~i~~~~~~~g~--~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~  200 (723)
T 1xfd_A          126 -QQLIFIFE-NNIYYCAHVGKQ--AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIM  200 (723)
T ss_dssp             -TCEEEEET-TEEEEESSSSSC--CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEE
T ss_pred             -CEEEEEEC-CeEEEEECCCCc--eEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceE
Confidence             67777765 799999998876  33333333332                  37899999 999999887553      


Q ss_pred             ----------------------------cEEEEeCCCCCCCCCCCCceEeccC------CCCEEEEEEcCCCCCEEEEEe
Q 010997          347 ----------------------------SVRMFDRRNLTSNGVGSPINKFEGH------SAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       347 ----------------------------~i~iwd~~~~~~~~~~~~~~~~~~h------~~~i~~l~~sp~~~~llas~~  392 (496)
                                                  .|++||+.+      +.....+..+      ...+..++|+|+|+.+ ++.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~------~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l-~~~~  273 (723)
T 1xfd_A          201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG------PTHDLEMMPPDDPRMREYYITMVKWATSTKVA-VTWL  273 (723)
T ss_dssp             EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS------SCCCEECCCCCCGGGSSEEEEEEEESSSSEEE-EEEE
T ss_pred             EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC------CceeEEeeCCccCCCccceeEEEEEeCCCeEE-EEEE
Confidence                                        799999987      4544555543      6679999999999854 4443


Q ss_pred             ----CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc----ceEEecCCCCcEEEE
Q 010997          393 ----EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV----VDFHWNASDPWTVVS  448 (496)
Q Consensus       393 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V----~~~~~~p~~~~l~~s  448 (496)
                          .+..|.+||+.....             ..+. ...+...+    ..++|+|+|..+++.
T Consensus       274 ~~~~~~~~i~~~d~~~g~~-------------~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          274 NRAQNVSILTLCDATTGVC-------------TKKH-EDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             ETTSCEEEEEEEETTTCCE-------------EEEE-EEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             cCCCCeEEEEEEeCCCCcc-------------eEEE-EeccCCEEeccCCCceEcCCCCeEEEE
Confidence                235799999987411             1111 11233333    378999999987765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=2.9e-20  Score=195.13  Aligned_cols=256  Identities=11%  Similarity=0.065  Sum_probs=176.6

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCC-----CCCccccCCCCCCCCceEEecCCC------------
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA-----QPNRHAVLGATNSRPDLILTGHQD------------  196 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~l~~h~~------------  196 (496)
                      ..+..|.+.+.+++|+| +++.||++ .++.|++||+.+     +...            .....+..            
T Consensus       114 ~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~~~g~~~------------~~~~~~~~~~~~g~~~~~ee  179 (706)
T 2z3z_A          114 TYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGEGMSRAI------------AVTIDGTETLVYGQAVHQRE  179 (706)
T ss_dssp             EEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTSCCCCCE------------ESCSCCBTTEEESSCCGGGC
T ss_pred             EEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccccCCCcE------------EeccCCCCCeEcccchhhhh
Confidence            34456778899999999 88888885 678999999987     5221            11111111            


Q ss_pred             -CcceeeeecCCCCceEEec---------------------------------CCCcEEEEecCCccccccCCccccccC
Q 010997          197 -NAEFALAMCPTEPYVLSGG---------------------------------KDKSVVLWSIQDHITSSATDPATAKSA  242 (496)
Q Consensus       197 -~~v~~l~~~p~~~~l~sg~---------------------------------~Dg~i~iwd~~~~~~~~~~~~~~~~~~  242 (496)
                       ..+.++.|+|||++|++++                                 .+..|.+||+.++....          
T Consensus       180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~----------  249 (706)
T 2z3z_A          180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY----------  249 (706)
T ss_dssp             TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE----------
T ss_pred             cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe----------
Confidence             0257899999999999887                                 33567777776543210          


Q ss_pred             CCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC-----eEEEEEccCCCcccee
Q 010997          243 GSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-----CLILWDARVGTSPVIK  317 (496)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~  317 (496)
                                                  +.....|...+.+++|+|++ ..|++++.++     .|.+||+.+++. ...
T Consensus       250 ----------------------------~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~  299 (706)
T 2z3z_A          250 ----------------------------LQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRF-VRT  299 (706)
T ss_dssp             ----------------------------CCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCE-EEE
T ss_pred             ----------------------------eccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCce-eeE
Confidence                                        00112466789999999999 6777776665     899999988731 112


Q ss_pred             ee-ccCCC---CeEEEEecC-CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE-EEEcCCCCCEEEEE
Q 010997          318 VE-KAHDA---DLHCVDWNP-LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSS  391 (496)
Q Consensus       318 ~~-~~~~~---~v~~i~~sp-~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~-l~~sp~~~~llas~  391 (496)
                      .. ..+..   .+.+++|+| .++.++++++.||.++||++...     +..+..+..|...+.. ++|+|+++.|++++
T Consensus       300 ~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-----~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~  374 (706)
T 2z3z_A          300 LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-----GRLIRQVTKGEWEVTNFAGFDPKGTRLYFES  374 (706)
T ss_dssp             EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-----SCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred             EEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-----CCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence            21 12222   346789998 24678999999999999988721     4667778888888887 89999999877777


Q ss_pred             eCCC----cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          392 AEDG----LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       392 ~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      +.++    .|..||+... .               ...+ .|...+.+++|+|++.+++++++.+    ..-+.|++|++
T Consensus       375 ~~~~~~~~~l~~~d~~~~-~---------------~~~l-~~~~~~~~~~~spdg~~l~~~~~~~----~~p~~i~l~d~  433 (706)
T 2z3z_A          375 TEASPLERHFYCIDIKGG-K---------------TKDL-TPESGMHRTQLSPDGSAIIDIFQSP----TVPRKVTVTNI  433 (706)
T ss_dssp             SSSCTTCBEEEEEETTCC-C---------------CEES-CCSSSEEEEEECTTSSEEEEEEECS----SCSCEEEEEES
T ss_pred             cCCCCceEEEEEEEcCCC-C---------------ceec-cCCCceEEEEECCCCCEEEEEecCC----CCCcEEEEEEC
Confidence            7665    5666666552 1               1111 2556789999999999887766533    23367999998


Q ss_pred             CC
Q 010997          468 SD  469 (496)
Q Consensus       468 ~~  469 (496)
                      ..
T Consensus       434 ~~  435 (706)
T 2z3z_A          434 GK  435 (706)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=1.1e-20  Score=198.32  Aligned_cols=280  Identities=11%  Similarity=0.157  Sum_probs=183.1

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      +...|.+++|+| ++.++++ . ++.|++||+.++            +. ..+..+.. .+.+++|+|+|++|+++ .|+
T Consensus        80 ~~~~v~~~~~sp-d~~~~~~-~-~~~i~~~d~~~~------------~~-~~l~~~~~-~~~~~~~SpdG~~la~~-~~~  141 (706)
T 2z3z_A           80 DAFPSFRTLDAG-RGLVVLF-T-QGGLVGFDMLAR------------KV-TYLFDTNE-ETASLDFSPVGDRVAYV-RNH  141 (706)
T ss_dssp             --CCCEEEEETT-TTEEEEE-E-TTEEEEEETTTT------------EE-EEEECCTT-CCTTCEECTTSSEEEEE-ETT
T ss_pred             cccCceeEEECC-CCeEEEE-E-CCEEEEEECCCC------------ce-EEccCCcc-cccCCcCCCCCCEEEEE-ECC
Confidence            346799999999 5555544 3 489999999876            22 23444544 57899999999999985 689


Q ss_pred             cEEEEecCC-----ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          219 SVVLWSIQD-----HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       219 ~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      .|.+||+.+     +........       ....+..                 ..  .....+...+.++.|+|++ ..
T Consensus       142 ~i~v~~~~~~~~~~g~~~~~~~~-------~~~~~~~-----------------g~--~~~~ee~~~~~~~~~SpDg-~~  194 (706)
T 2z3z_A          142 NLYIARGGKLGEGMSRAIAVTID-------GTETLVY-----------------GQ--AVHQREFGIEKGTFWSPKG-SC  194 (706)
T ss_dssp             EEEEEECBCTTSCCCCCEESCSC-------CBTTEEE-----------------SS--CCGGGCTTCCCSEEECTTS-SE
T ss_pred             eEEEEecCcccccCCCcEEeccC-------CCCCeEc-----------------cc--chhhhhcCCCceEEECCCC-CE
Confidence            999999986     432211100       0000000                 00  0112233457899999999 67


Q ss_pred             EEEEc---------------------------------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE
Q 010997          294 FCSVG---------------------------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  340 (496)
Q Consensus       294 l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~  340 (496)
                      |++++                                 .+..|.+||+.+++...+.....|...+.+++|+| ++..|+
T Consensus       195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~  273 (706)
T 2z3z_A          195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP-DENILY  273 (706)
T ss_dssp             EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT-TSSEEE
T ss_pred             EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEEC-CCCEEE
Confidence            77776                                 44789999998876221211224667899999999 999999


Q ss_pred             EEcCCC-----cEEEEeCCCCCCCCCCCCceEec--cCCC---CEEEEEEcC--CCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997          341 TGSADN-----SVRMFDRRNLTSNGVGSPINKFE--GHSA---AVLCVQWSP--DKSSVFGSSAEDGLLNIWDYEKVGKK  408 (496)
Q Consensus       341 sgs~dg-----~i~iwd~~~~~~~~~~~~~~~~~--~h~~---~i~~l~~sp--~~~~llas~~~dg~i~iwd~~~~~~~  408 (496)
                      +++.++     .|.+||+.+      +.....+.  .+..   .+..++|+|  +|+ ++++++.|+.++||++...+  
T Consensus       274 ~~~~~~~~~~~~v~~~d~~~------g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~--  344 (706)
T 2z3z_A          274 VAEVNRAQNECKVNAYDAET------GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTG--  344 (706)
T ss_dssp             EEEECTTSCEEEEEEEETTT------CCEEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTS--
T ss_pred             EEEeCCCCCeeEEEEEECCC------CceeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccCCccEEEEEECCC--
Confidence            887775     899999987      42333332  1222   346789999  998 56788889999999886321  


Q ss_pred             cCCCCCCCCCCCeeEEEecCCCCCcce-EEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccc
Q 010997          409 VEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  487 (496)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~  487 (496)
                                  ..+..+.+|...+.. ++|+|++..++++++++   +.....|..|++..      ++ +..+. |..
T Consensus       345 ------------~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~---~~~~~~l~~~d~~~------~~-~~~l~-~~~  401 (706)
T 2z3z_A          345 ------------RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA---SPLERHFYCIDIKG------GK-TKDLT-PES  401 (706)
T ss_dssp             ------------CEEEECCCSSSCEEEEEEECTTSSEEEEEESSS---CTTCBEEEEEETTC------CC-CEESC-CSS
T ss_pred             ------------CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC---CCceEEEEEEEcCC------CC-ceecc-CCC
Confidence                        234445667777776 79999998888766654   11112666666652      22 22222 566


Q ss_pred             eEEEeccCC
Q 010997          488 HVISCTSKP  496 (496)
Q Consensus       488 ~v~~~~~sP  496 (496)
                      .+.+++|||
T Consensus       402 ~~~~~~~sp  410 (706)
T 2z3z_A          402 GMHRTQLSP  410 (706)
T ss_dssp             SEEEEEECT
T ss_pred             ceEEEEECC
Confidence            788899987

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=1.4e-20  Score=192.89  Aligned_cols=234  Identities=8%  Similarity=0.008  Sum_probs=169.1

Q ss_pred             CCceeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC--
Q 010997          140 PGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK--  216 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~--  216 (496)
                      ..+|++++|+| |++.||+++. ||++.||++.++            . ...+..|....+.+++|+|+ +++++++.  
T Consensus        21 ~~~~~~~~~~~-DG~~la~~s~~~g~~~lw~~~~g------------~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~   85 (582)
T 3o4h_A           21 AVEKYSLQGVV-DGDKLLVVGFSEGSVNAYLYDGG------------E-TVKLNREPINSVLDPHYGVG-RVILVRDVSK   85 (582)
T ss_dssp             HSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETT------------E-EEECCSSCCSEECEECTTCS-EEEEEEECST
T ss_pred             ccchheeecCC-CCCeEEEEEccCCceeEEEEcCC------------C-cEeeecccccccccccCCCC-eEEEEeccCC
Confidence            44699999999 8889998877 999999998554            2 23344555336899999999 77777765  


Q ss_pred             -CCcEEEEecCC--ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          217 -DKSVVLWSIQD--HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       217 -Dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                       +....+|.+..  ....                                        ..+... ..+...+|+|++...
T Consensus        86 g~~~~~l~~~~~~~~g~~----------------------------------------~~l~~~-~~~~~~~~s~dg~~~  124 (582)
T 3o4h_A           86 GAEQHALFKVNTSRPGEE----------------------------------------QRLEAV-KPMRILSGVDTGEAV  124 (582)
T ss_dssp             TSCCEEEEEEETTSTTCC----------------------------------------EECTTS-CSBEEEEEEECSSCE
T ss_pred             CCcceEEEEEeccCCCcc----------------------------------------ccccCC-CCceeeeeCCCCCeE
Confidence             56677776642  1100                                        111111 123356888888554


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC----CcEEEEeCCCCCCCCCCCCceEec
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d----g~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      +++.+.++.+.+||+.+++  ..... .+..  .+++|+| ++.+|++++.+    +.|++||+.+      +. +..+.
T Consensus       125 ~~~s~~~~~~~l~d~~~g~--~~~l~-~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~------g~-~~~l~  191 (582)
T 3o4h_A          125 VFTGATEDRVALYALDGGG--LRELA-RLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSS------GG-LRVFD  191 (582)
T ss_dssp             EEEEECSSCEEEEEEETTE--EEEEE-EESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTT------CC-CEEEC
T ss_pred             EEEecCCCCceEEEccCCc--EEEee-cCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCC------CC-ceEee
Confidence            4444444555599998876  22222 2333  8899999 99999988877    7899999987      33 45778


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE--------ec
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH--------WN  439 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~--------~~  439 (496)
                      .|...+..++|||||+.| +++..++  .|++||+...               ... ...+|...+..++        |+
T Consensus       192 ~~~~~~~~~~~SpDG~~l-~~~~~~~~~~i~~~d~~~~---------------~~~-~~~~~~~~~~~~~~~~~~~~~~s  254 (582)
T 3o4h_A          192 SGEGSFSSASISPGMKVT-AGLETAREARLVTVDPRDG---------------SVE-DLELPSKDFSSYRPTAITWLGYL  254 (582)
T ss_dssp             CSSCEEEEEEECTTSCEE-EEEECSSCEEEEEECTTTC---------------CEE-ECCCSCSHHHHHCCSEEEEEEEC
T ss_pred             cCCCccccceECCCCCEE-EEccCCCeeEEEEEcCCCC---------------cEE-EccCCCcChhhhhhccccceeEc
Confidence            899999999999999965 5777888  8999999874               222 4567777788888        99


Q ss_pred             CCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          440 ASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       440 p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      |++ .++++++.|       |+++||++
T Consensus       255 pdg-~~~~~~~~~-------g~~~l~~~  274 (582)
T 3o4h_A          255 PDG-RLAVVARRE-------GRSAVFID  274 (582)
T ss_dssp             TTS-CEEEEEEET-------TEEEEEET
T ss_pred             CCC-cEEEEEEcC-------CcEEEEEE
Confidence            999 788877665       99999999

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=1.3e-18  Score=167.39  Aligned_cols=255  Identities=12%  Similarity=0.069  Sum_probs=164.3

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCC-CCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc--eEEec
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE-AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY--VLSGG  215 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~--l~sg~  215 (496)
                      ....+..++|+| ++++|++++.+ .|.+|++. ++            +..............+++|+|+|++  ++++.
T Consensus        38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g------------~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~  103 (365)
T 1jof_A           38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPT------------EIVHEASHPIGGHPRANDADTNTRAIFLLAAK  103 (365)
T ss_dssp             TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETT------------EEEEEEEEECCSSGGGGCTTSCCEEEEEEECS
T ss_pred             CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCC------------CEEEeeEeecCCCCccEEECCCCCEEEEEEec
Confidence            445788999999 88888888887 99999986 44            1111111111112567999999994  55654


Q ss_pred             -------------CCCcEEEEecCC-ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCc
Q 010997          216 -------------KDKSVVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDT  280 (496)
Q Consensus       216 -------------~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~  280 (496)
                                   .+|++.+|++.. +...                                     ..+..+. .+...
T Consensus       104 ~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~-------------------------------------~~~~~~~~~~~~~  146 (365)
T 1jof_A          104 QPPYAVYANPFYKFAGYGNVFSVSETGKLE-------------------------------------KNVQNYEYQENTG  146 (365)
T ss_dssp             STTCCEEEEEESSSCCEEEEEEECTTCCEE-------------------------------------EEEEEEECCTTCC
T ss_pred             CCcceeccceeecCCceEEEEccCCCCcCc-------------------------------------ceEeeEEeCCCCc
Confidence                         689999999863 2110                                     0001111 24567


Q ss_pred             eeEEEEccCCCceEEEE-cCCCeEEEEEcc-CCCccceeeec--cCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCC
Q 010997          281 VEDVTFCPSSAQEFCSV-GDDSCLILWDAR-VGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRN  355 (496)
Q Consensus       281 v~~l~~~~~~~~~l~s~-~~dg~i~iwd~~-~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~  355 (496)
                      +.+++|+|++ .+++++ ..++.|.+||+. +++........  .|...+..++|+| +++++++++ .++.|.+|++..
T Consensus       147 ~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~  224 (365)
T 1jof_A          147 IHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             EEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             ceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeC
Confidence            8999999999 455554 457899999998 55521122222  2466799999999 888877766 478999998763


Q ss_pred             CCCCCCCCCc---eE---ec----cCCC------CEEEEE-EcCCCCCEEEEEeCCC-----cEEEEECCCCCcccCCCC
Q 010997          356 LTSNGVGSPI---NK---FE----GHSA------AVLCVQ-WSPDKSSVFGSSAEDG-----LLNIWDYEKVGKKVEQGP  413 (496)
Q Consensus       356 ~~~~~~~~~~---~~---~~----~h~~------~i~~l~-~sp~~~~llas~~~dg-----~i~iwd~~~~~~~~~~~~  413 (496)
                      ..    +...   ..   +.    +|..      .+..++ |+|+|++|+++...++     .|.+|++...++.     
T Consensus       225 ~~----g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-----  295 (365)
T 1jof_A          225 AT----HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI-----  295 (365)
T ss_dssp             TT----CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE-----
T ss_pred             CC----CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE-----
Confidence            11    2321   11   21    2222      588999 9999997765543333     8999999632211     


Q ss_pred             CCCCCCCeeEE-EecCCCCCcceEEecC---CCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          414 RTTNYPAGLFF-QHAGHRDKVVDFHWNA---SDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       414 ~~~~~~~~~~~-~~~~h~~~V~~~~~~p---~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                             ..+. ....+...+..++|+|   ++.+++++..+       ++.|+||++..
T Consensus       296 -------~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~-------~~~v~v~~~~~  341 (365)
T 1jof_A          296 -------EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-------EGWLEIYRWKD  341 (365)
T ss_dssp             -------EEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-------SCEEEEEEEET
T ss_pred             -------EEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC-------CCeEEEEEEch
Confidence                   1111 1333455678899999   78877654333       38999999873

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=4.4e-20  Score=201.75  Aligned_cols=280  Identities=9%  Similarity=0.005  Sum_probs=202.2

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..+.+|.+.+.++.|++ + .++++++.+|.+.||.+....           .....+..|..  +..++|+|+|++|++
T Consensus       197 ~~l~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g-----------~~~~~l~~~~~--~~~~~~SpDG~~la~  261 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDG-----------KDLRKHTSFTD--YYPRHLNTDGRRILF  261 (1045)
T ss_dssp             EEEECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTS-----------CSCEECCCCCS--SCEEEEEESSSCEEE
T ss_pred             EECcCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCC-----------CcceEecCCCC--cceeeEcCCCCEEEE
Confidence            34478999999999998 5 677888889999999876431           22334555553  567899999999988


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc-cCCCc
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC-PSSAQ  292 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~  292 (496)
                      +. ++.|.+||+...... ....                             ...........|...+.+++|+ |++ .
T Consensus       262 ~~-~~~i~~~d~~~~~l~-~l~~-----------------------------~~~~~~~~~~~~~~~v~~~~~S~pdG-~  309 (1045)
T 1k32_A          262 SK-GGSIYIFNPDTEKIE-KIEI-----------------------------GDLESPEDRIISIPSKFAEDFSPLDG-D  309 (1045)
T ss_dssp             EE-TTEEEEECTTTCCEE-ECCC-----------------------------CCCCBCCSEEEECGGGGEEEEEECGG-G
T ss_pred             Ee-CCEEEEecCCceEee-eecc-----------------------------CcccccccccccccccceeeecCCCC-C
Confidence            84 899999998432111 0000                             0000001223466789999999 999 6


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCC-CeEEEEecCCCCcEEEEEcCCCcEE-EEeCCCCCCCCCCCCceEecc
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLHCVDWNPLDDNLILTGSADNSVR-MFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~sgs~dg~i~-iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      .+++++ ++.|.+|++..+.   ...+..|.. .+..++|+  ++..|++++.++.+. +||+..      + ....+.+
T Consensus       310 ~la~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~------~-~~~~l~~  376 (1045)
T 1k32_A          310 LIAFVS-RGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRT------G-KAEKFEE  376 (1045)
T ss_dssp             CEEEEE-TTEEEEECTTSSB---EEECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTT------C-CEEECCC
T ss_pred             EEEEEE-cCEEEEEcCCCCc---eEEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCC------C-CceEecC
Confidence            677776 7899999988765   233456666 89999999  688888888888888 889876      3 3445557


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      |...+..++|+|+|+. ||+++.++.|++||+.+.               .......+|...|.+++|+|++.+++++..
T Consensus       377 ~~~~~~~~~~SpDG~~-la~~~~~~~v~~~d~~tg---------------~~~~~~~~~~~~v~~~~~SpDG~~la~~~~  440 (1045)
T 1k32_A          377 NLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETG---------------KPTVIERSREAMITDFTISDNSRFIAYGFP  440 (1045)
T ss_dssp             CCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTC---------------CEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             CccceeeeEECCCCCE-EEEECCCCeEEEEECCCC---------------ceEEeccCCCCCccceEECCCCCeEEEEec
Confidence            8889999999999995 568888999999999874               233334578889999999999987765443


Q ss_pred             CC--CCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          451 DD--CDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       451 ~d--~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ++  ...+..++.|++||+.      .++ +..+..|...+.+++|+|
T Consensus       441 ~~~~~~~~~~~~~i~l~d~~------~g~-~~~l~~~~~~~~~~~~sp  481 (1045)
T 1k32_A          441 LKHGETDGYVMQAIHVYDME------GRK-IFAATTENSHDYAPAFDA  481 (1045)
T ss_dssp             ECSSTTCSCCEEEEEEEETT------TTE-EEECSCSSSBEEEEEECT
T ss_pred             CccccccCCCCCeEEEEECC------CCc-EEEeeCCCcccCCceEcC
Confidence            21  0012334699999998      344 556677888888899987

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=7.8e-19  Score=167.80  Aligned_cols=238  Identities=12%  Similarity=0.095  Sum_probs=172.4

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC--------cceeeeec
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN--------AEFALAMC  205 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~--------~v~~l~~~  205 (496)
                      ...+.+...+..++|+|++..++++...++.|.+||..++            +....+..+...        .+.+++|+
T Consensus        82 ~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s  149 (353)
T 3vgz_A           82 TQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG------------EVKGRLVLDDRKRTEEVRPLQPRELVAD  149 (353)
T ss_dssp             EEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC------------CEEEEEESCCCCCCSSCCCCEEEEEEEE
T ss_pred             EEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC------------eeEEEEecCCCccccccCCCCCceEEEC
Confidence            3444555668899999944446667777899999999887            333444443321        15789999


Q ss_pred             CCCCceEEec--CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997          206 PTEPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED  283 (496)
Q Consensus       206 p~~~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  283 (496)
                      |+++++++++  .++.|.+||..++...                                        ..+..+...+.+
T Consensus       150 ~dg~~l~~~~~~~~~~i~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~  189 (353)
T 3vgz_A          150 DATNTVYISGIGKESVIWVVDGGNIKLK----------------------------------------TAIQNTGKMSTG  189 (353)
T ss_dssp             TTTTEEEEEEESSSCEEEEEETTTTEEE----------------------------------------EEECCCCTTCCC
T ss_pred             CCCCEEEEEecCCCceEEEEcCCCCceE----------------------------------------EEecCCCCccce
Confidence            9999777665  5889999999764321                                        233334455788


Q ss_pred             EEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc----CCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCC
Q 010997          284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTS  358 (496)
Q Consensus       284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~  358 (496)
                      ++|+|++ ..+++++.++.|.+||+.+++  .......    +...+..++|+| ++.++++++ .++.|.+||+.+   
T Consensus       190 ~~~s~dg-~~l~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~---  262 (353)
T 3vgz_A          190 LALDSEG-KRLYTTNADGELITIDTADNK--ILSRKKLLDDGKEHFFINISLDT-ARQRAFITDSKAAEVLVVDTRN---  262 (353)
T ss_dssp             CEEETTT-TEEEEECTTSEEEEEETTTTE--EEEEEECCCSSSCCCEEEEEEET-TTTEEEEEESSSSEEEEEETTT---
T ss_pred             EEECCCC-CEEEEEcCCCeEEEEECCCCe--EEEEEEcCCCCCCcccceEEECC-CCCEEEEEeCCCCEEEEEECCC---
Confidence            9999999 678888889999999998876  3333322    456788999999 777655554 559999999988   


Q ss_pred             CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997          359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  438 (496)
Q Consensus       359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  438 (496)
                         ++.+..+.....  ..++|+|++.+++++...++.|.+||+.+.               ..+..... ...+.+++|
T Consensus       263 ---~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---------------~~~~~~~~-~~~~~~~~~  321 (353)
T 3vgz_A          263 ---GNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSY---------------KVVKTFDT-PTHPNSLAL  321 (353)
T ss_dssp             ---CCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTT---------------EEEEEEEC-CSEEEEEEE
T ss_pred             ---CcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCC---------------eEEEEEec-CCCCCeEEE
Confidence               666666664332  579999999988877778999999999874               33333333 336789999


Q ss_pred             cCCCCcEEEEecC
Q 010997          439 NASDPWTVVSVSD  451 (496)
Q Consensus       439 ~p~~~~l~~s~s~  451 (496)
                      +|++.+++++...
T Consensus       322 s~dg~~l~v~~~~  334 (353)
T 3vgz_A          322 SADGKTLYVSVKQ  334 (353)
T ss_dssp             CTTSCEEEEEEEC
T ss_pred             cCCCCEEEEEEcc
Confidence            9999988887664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.84  E-value=9.4e-20  Score=173.85  Aligned_cols=231  Identities=8%  Similarity=0.042  Sum_probs=158.9

Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEe
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWS  224 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd  224 (496)
                      +++.+ ++.++++++.++.|++||+.++            +....+..+....+..++|+|+++++ +++..++.|.+||
T Consensus         5 ~~~~~-~~~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d   71 (349)
T 1jmx_B            5 PALKA-GHEYMIVTNYPNNLHVVDVASD------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID   71 (349)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTT------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccccC-CCEEEEEeCCCCeEEEEECCCC------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEe
Confidence            45666 7889999999999999999887            44445554441135789999999855 5666789999999


Q ss_pred             cCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-C-----CCceeEEEEccCCCceEEEEc
Q 010997          225 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-H-----EDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h-----~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      +.++...                                        ..+.. +     ...+.+++|+|++ ..+++++
T Consensus        72 ~~t~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~  110 (349)
T 1jmx_B           72 LDTCKNT----------------------------------------FHANLSSVPGEVGRSMYSFAISPDG-KEVYATV  110 (349)
T ss_dssp             TTTTEEE----------------------------------------EEEESCCSTTEEEECSSCEEECTTS-SEEEEEE
T ss_pred             CCCCcEE----------------------------------------EEEEcccccccccccccceEECCCC-CEEEEEc
Confidence            9765332                                        11111 1     2236789999999 5677766


Q ss_pred             CC------------CeEEEEEccCCCcc-ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997          299 DD------------SCLILWDARVGTSP-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  365 (496)
Q Consensus       299 ~d------------g~i~iwd~~~~~~~-~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  365 (496)
                      .+            +.|.+||+.+++.. ..... .+...+.+++|+| ++. +++++.  .|.+||+.+      +..+
T Consensus       111 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~------~~~~  179 (349)
T 1jmx_B          111 NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKT------GKYT  179 (349)
T ss_dssp             EEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT-TSC-EEEESS--SEEEECTTT------CCEE
T ss_pred             ccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECC-CCc-EEEccC--cEEEEeCCC------Ccee
Confidence            54            89999999875411 12222 3445789999999 788 555543  499999987      3333


Q ss_pred             eEeccC--------------------------------------------------------------------CCCEEE
Q 010997          366 NKFEGH--------------------------------------------------------------------SAAVLC  377 (496)
Q Consensus       366 ~~~~~h--------------------------------------------------------------------~~~i~~  377 (496)
                      ..+..+                                                                    ...+..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (349)
T 1jmx_B          180 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT  259 (349)
T ss_dssp             EEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred             ccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCccee
Confidence            333211                                                                    124567


Q ss_pred             EEEcC-CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997          378 VQWSP-DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  456 (496)
Q Consensus       378 l~~sp-~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg  456 (496)
                      ++|+| ++..++ ++  ++.|.+||+.+.               +.+.... ....+.+++|+|++.+++++ +.     
T Consensus       260 ~~~sp~dg~~l~-~~--~~~v~~~d~~~~---------------~~~~~~~-~~~~~~~~~~s~dg~~l~~~-~~-----  314 (349)
T 1jmx_B          260 GLRSPKDPNQIY-GV--LNRLAKYDLKQR---------------KLIKAAN-LDHTYYCVAFDKKGDKLYLG-GT-----  314 (349)
T ss_dssp             EEECSSCTTEEE-EE--ESEEEEEETTTT---------------EEEEEEE-CSSCCCEEEECSSSSCEEEE-SB-----
T ss_pred             eEecCCCCCEEE-EE--cCeEEEEECccC---------------eEEEEEc-CCCCccceEECCCCCEEEEe-cC-----
Confidence            88889 998654 45  889999999874               2222222 22357899999999888753 33     


Q ss_pred             CCCCeEEEeecC
Q 010997          457 GGGGTLQIWRMS  468 (496)
Q Consensus       457 g~Dg~i~iw~~~  468 (496)
                        ++.|++||+.
T Consensus       315 --~~~v~v~d~~  324 (349)
T 1jmx_B          315 --FNDLAVFNPD  324 (349)
T ss_dssp             --SSEEEEEETT
T ss_pred             --CCeEEEEecc
Confidence              4999999998

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=2.3e-19  Score=170.17  Aligned_cols=234  Identities=12%  Similarity=0.093  Sum_probs=159.9

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC----CCcceeeeecCCCCceEEec--
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ----DNAEFALAMCPTEPYVLSGG--  215 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~----~~~v~~l~~~p~~~~l~sg~--  215 (496)
                      .+..++|+|++..++++++.++.|.+||+.++            +....+....    ...+.+++|+|++++|++++  
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  102 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG------------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESP  102 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTC------------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCC------------CeEeeEEcCCcccccccccceEECCCCCEEEEEecc
Confidence            58899999943355677777899999999877            3333333211    11367899999999888885  


Q ss_pred             ----------CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997          216 ----------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  285 (496)
Q Consensus       216 ----------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  285 (496)
                                .++.|.+||+.++...                                        ..+.. ...+.+++
T Consensus       103 ~~~~~~~~~~~~~~i~v~d~~~~~~~----------------------------------------~~~~~-~~~~~~~~  141 (337)
T 1pby_B          103 VRLELTHFEVQPTRVALYDAETLSRR----------------------------------------KAFEA-PRQITMLA  141 (337)
T ss_dssp             EEECSSCEEECCCEEEEEETTTTEEE----------------------------------------EEEEC-CSSCCCEE
T ss_pred             cccccccccccCceEEEEECCCCcEE----------------------------------------EEEeC-CCCcceeE
Confidence                      5799999999754321                                        22222 34577899


Q ss_pred             EccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CC------------------
Q 010997          286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DN------------------  346 (496)
Q Consensus       286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg------------------  346 (496)
                      |+|++ ..++++  ++.|.+||+.+++  .......+. ....+.|+| ++..++.++. ++                  
T Consensus       142 ~s~dg-~~l~~~--~~~i~~~d~~~~~--~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (337)
T 1pby_B          142 WARDG-SKLYGL--GRDLHVMDPEAGT--LVEDKPIQS-WEAETYAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADP  214 (337)
T ss_dssp             ECTTS-SCEEEE--SSSEEEEETTTTE--EEEEECSTT-TTTTTBCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred             ECCCC-CEEEEe--CCeEEEEECCCCc--Eeeeeeccc-cCCCceeCC-CccEEeeeccCCCceeeeeeccccccccccc
Confidence            99999 556665  6889999998876  333333222 011237888 6665544433 33                  


Q ss_pred             -----cEEEEeCCCCCCCCCCCC-ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCC
Q 010997          347 -----SVRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA  420 (496)
Q Consensus       347 -----~i~iwd~~~~~~~~~~~~-~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  420 (496)
                           .|.+||+.+      ++. ...+..+...+.+++|+|++.+++ ++  ++.|.+||+...               
T Consensus       215 ~~~~~~v~~~d~~~------~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~--~~~v~~~d~~~~---------------  270 (337)
T 1pby_B          215 TAYRTGLLTMDLET------GEMAMREVRIMDVFYFSTAVNPAKTRAF-GA--YNVLESFDLEKN---------------  270 (337)
T ss_dssp             GGEEEEEEEEETTT------CCEEEEEEEECSSCEEEEEECTTSSEEE-EE--ESEEEEEETTTT---------------
T ss_pred             cccccceEEEeCCC------CCceEeecCCCCCceeeEEECCCCCEEE-Ee--CCeEEEEECCCC---------------
Confidence                 468999987      333 334455677889999999999755 44  789999999774               


Q ss_pred             eeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       421 ~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +.+..... ...+.+++|+|++.+++++ +       .|+.|++||+.
T Consensus       271 ~~~~~~~~-~~~~~~~~~s~dg~~l~~~-~-------~~~~i~v~d~~  309 (337)
T 1pby_B          271 ASIKRVPL-PHSYYSVNVSTDGSTVWLG-G-------ALGDLAAYDAE  309 (337)
T ss_dssp             EEEEEEEC-SSCCCEEEECTTSCEEEEE-S-------BSSEEEEEETT
T ss_pred             cCcceecC-CCceeeEEECCCCCEEEEE-c-------CCCcEEEEECc
Confidence            22333322 2457899999999877753 3       35999999998

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.82  E-value=3.7e-19  Score=194.50  Aligned_cols=233  Identities=7%  Similarity=0.002  Sum_probs=173.0

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec-CCCCceEEecCCCc
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC-PTEPYVLSGGKDKS  219 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~-p~~~~l~sg~~Dg~  219 (496)
                      ..+..++|+| +++.||.+. ++.|++||+...... .+.+. ..........|.. .+.+++|+ |+|++|++++ ++.
T Consensus       245 ~~~~~~~~Sp-DG~~la~~~-~~~i~~~d~~~~~l~-~l~~~-~~~~~~~~~~~~~-~v~~~~~S~pdG~~la~~~-~~~  318 (1045)
T 1k32_A          245 TDYYPRHLNT-DGRRILFSK-GGSIYIFNPDTEKIE-KIEIG-DLESPEDRIISIP-SKFAEDFSPLDGDLIAFVS-RGQ  318 (1045)
T ss_dssp             CSSCEEEEEE-SSSCEEEEE-TTEEEEECTTTCCEE-ECCCC-CCCBCCSEEEECG-GGGEEEEEECGGGCEEEEE-TTE
T ss_pred             CCcceeeEcC-CCCEEEEEe-CCEEEEecCCceEee-eeccC-ccccccccccccc-ccceeeecCCCCCEEEEEE-cCE
Confidence            3577889999 788888774 889999998433111 11000 0000001122333 58899999 9999999888 889


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC-ceeEEEEccCCCceEEEEc
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-TVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~  298 (496)
                      |.+|++..+..                                         ..+..|.. .+..++|+ ++ ..|++++
T Consensus       319 i~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~s-dg-~~l~~~s  355 (1045)
T 1k32_A          319 AFIQDVSGTYV-----------------------------------------LKVPEPLRIRYVRRGGD-TK-VAFIHGT  355 (1045)
T ss_dssp             EEEECTTSSBE-----------------------------------------EECSCCSCEEEEEECSS-SE-EEEEEEE
T ss_pred             EEEEcCCCCce-----------------------------------------EEccCCCcceEEeeeEc-CC-CeEEEEE
Confidence            99999865321                                         23445666 89999999 87 6788888


Q ss_pred             CCCeEE-EEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEE
Q 010997          299 DDSCLI-LWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC  377 (496)
Q Consensus       299 ~dg~i~-iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~  377 (496)
                      .++.+. +||+..+.  .. .+..|...+..++|+| ++.+|++++.++.|++||+.+      +.....+.+|...+.+
T Consensus       356 ~~~~l~~~~d~~~~~--~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~t------g~~~~~~~~~~~~v~~  425 (1045)
T 1k32_A          356 REGDFLGIYDYRTGK--AE-KFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLET------GKPTVIERSREAMITD  425 (1045)
T ss_dssp             TTEEEEEEEETTTCC--EE-ECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTT------CCEEEEEECSSSCCCC
T ss_pred             CCCceEEEEECCCCC--ce-EecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCC------CceEEeccCCCCCccc
Confidence            888888 99988765  22 3337788999999999 999999999999999999987      6666666689999999


Q ss_pred             EEEcCCCCCEEEEEeCC----------CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          378 VQWSPDKSSVFGSSAED----------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       378 l~~sp~~~~llas~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                      ++|+|+|++|+ +++.+          +.|++||+...               . ...+.+|...+..++|+|++.+++.
T Consensus       426 ~~~SpDG~~la-~~~~~~~~~~~~~~~~~i~l~d~~~g---------------~-~~~l~~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          426 FTISDNSRFIA-YGFPLKHGETDGYVMQAIHVYDMEGR---------------K-IFAATTENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             EEECTTSCEEE-EEEEECSSTTCSCCEEEEEEEETTTT---------------E-EEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             eEECCCCCeEE-EEecCccccccCCCCCeEEEEECCCC---------------c-EEEeeCCCcccCCceEcCCCCEEEE
Confidence            99999999754 55443          48999999873               2 4456678888899999999987764


Q ss_pred             Ee
Q 010997          448 SV  449 (496)
Q Consensus       448 s~  449 (496)
                      ..
T Consensus       489 ~s  490 (1045)
T 1k32_A          489 LS  490 (1045)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=1.4e-18  Score=165.97  Aligned_cols=258  Identities=11%  Similarity=0.112  Sum_probs=164.3

Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC---CCcEEEEecCCccccccCCccc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK---DKSVVLWSIQDHITSSATDPAT  238 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~---Dg~i~iwd~~~~~~~~~~~~~~  238 (496)
                      ++.|.+|++.......        ... ....+.. .+..++|+|+|+ |++++.   ++.|.+||+.++..        
T Consensus        15 ~~~i~v~~~d~~tg~~--------~~~-~~~~~~~-~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~--------   75 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTL--------TND-GLLAATQ-NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA--------   75 (347)
T ss_dssp             CCEEEEEEEETTTTEE--------EEE-EEEEECS-CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE--------
T ss_pred             CCCEEEEEEcCCCCeE--------EEe-eeeeccC-CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE--------
Confidence            5568888776531110        111 2223333 357899999999 665554   68999999964321        


Q ss_pred             cccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc-CCCeEEEEEccCC-Cccce
Q 010997          239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DDSCLILWDARVG-TSPVI  316 (496)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~iwd~~~~-~~~~~  316 (496)
                                                    ..+..+..+...+..++|+|++ .+|++++ .++.|.+||+... ....+
T Consensus        76 ------------------------------~~~~~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~  124 (347)
T 3hfq_A           76 ------------------------------HKLNTVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLT  124 (347)
T ss_dssp             ------------------------------EEEEEEEEESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             ------------------------------EEeeeeecCCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeec
Confidence                                          1123334466778899999999 5555554 7899999999643 21112


Q ss_pred             eeecc---------CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC--ceEeccC-CCCEEEEEEcCCC
Q 010997          317 KVEKA---------HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP--INKFEGH-SAAVLCVQWSPDK  384 (496)
Q Consensus       317 ~~~~~---------~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--~~~~~~h-~~~i~~l~~sp~~  384 (496)
                      .....         +...+.+++|+| ++.++++...++.|.+||+...     +..  +..+..+ ...+..++|+|+|
T Consensus       125 ~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~-----g~~~~~~~~~~~~g~~p~~~~~spdg  198 (347)
T 3hfq_A          125 DTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDA-----GQLSEQSVLTMEAGFGPRHLVFSPDG  198 (347)
T ss_dssp             EEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTT-----SCEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             ceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCC-----CcEEEeeeEEcCCCCCCceEEECCCC
Confidence            22211         123488999999 7787787888899999999831     222  2222222 3367899999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC------CCcceEEecCCCCcEEEEecCCCCCCCC
Q 010997          385 SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR------DKVVDFHWNASDPWTVVSVSDDCDSTGG  458 (496)
Q Consensus       385 ~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~V~~~~~~p~~~~l~~s~s~d~~sgg~  458 (496)
                      +++++++..++.|.+|++......           ...+.......      ..+..++|+|++.+++++...+      
T Consensus       199 ~~l~v~~~~~~~v~v~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~------  261 (347)
T 3hfq_A          199 QYAFLAGELSSQIASLKYDTQTGA-----------FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY------  261 (347)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTE-----------EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT------
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCc-----------eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC------
Confidence            988777788999999998752111           01122222211      3478899999999887766544      


Q ss_pred             CCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          459 GGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       459 Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                       +.|.+|++...   .....+..+..+...+..++|+|
T Consensus       262 -~~v~v~~~~~~---g~~~~~~~~~~~~~~~~~~~~sp  295 (347)
T 3hfq_A          262 -NTLAVFAVTAD---GHLTLIQQISTEGDFPRDFDLDP  295 (347)
T ss_dssp             -TEEEEEEECGG---GCEEEEEEEECSSSCCCEEEECT
T ss_pred             -CEEEEEEECCC---CcEEEeEEEecCCCCcCeEEECC
Confidence             89999999721   01123334444445567888876

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=191.09  Aligned_cols=242  Identities=8%  Similarity=0.116  Sum_probs=162.1

Q ss_pred             EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC--CcceeeeecCCCCceEEecC------
Q 010997          145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--NAEFALAMCPTEPYVLSGGK------  216 (496)
Q Consensus       145 ~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~--~~v~~l~~~p~~~~l~sg~~------  216 (496)
                      .++|+| ++.+++++ .||.|++||+.++            +....+.+|..  ..+.+++|+|||++|++++.      
T Consensus        20 ~~~~s~-dg~~~~~~-~d~~i~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~   85 (719)
T 1z68_A           20 FPNWIS-GQEYLHQS-ADNNIVLYNIETG------------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWR   85 (719)
T ss_dssp             CCEESS-SSEEEEEC-TTSCEEEEESSSC------------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSS
T ss_pred             ccEECC-CCeEEEEc-CCCCEEEEEcCCC------------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEE
Confidence            678999 77666654 6999999999987            34444544432  12789999999999998876      


Q ss_pred             ---CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          217 ---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       217 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                         |+.|++||+.++.....                                      ..+   ...+..++|+|+| ..
T Consensus        86 ~s~~~~i~~~d~~~g~~~~~--------------------------------------~~l---~~~~~~~~~SPDG-~~  123 (719)
T 1z68_A           86 YSYTATYYIYDLSNGEFVRG--------------------------------------NEL---PRPIQYLCWSPVG-SK  123 (719)
T ss_dssp             SCEEEEEEEEETTTTEECCS--------------------------------------SCC---CSSBCCEEECSST-TC
T ss_pred             eecceEEEEEECCCCccccc--------------------------------------eec---CcccccceECCCC-CE
Confidence               78999999986543100                                      001   1357889999999 66


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCe-----------------EEEEecCCCCcEEEEEcCCC----------
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADL-----------------HCVDWNPLDDNLILTGSADN----------  346 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-----------------~~i~~sp~~~~~l~sgs~dg----------  346 (496)
                      |+.+. ++.|++||+.++... .....++...|                 .+++|+| ++.+||+++.|.          
T Consensus       124 la~~~-~~~i~~~~~~~g~~~-~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~  200 (719)
T 1z68_A          124 LAYVY-QNNIYLKQRPGDPPF-QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSY  200 (719)
T ss_dssp             EEEEE-TTEEEEESSTTSCCE-ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEE
T ss_pred             EEEEE-CCeEEEEeCCCCCcE-EEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeec
Confidence            77765 789999999877621 11112332222                 4899999 999999987652          


Q ss_pred             ------------------------cEEEEeCCCCCCCCCCCCc--------eEeccCCCCEEEEEEcCCCCCEEEEEeCC
Q 010997          347 ------------------------SVRMFDRRNLTSNGVGSPI--------NKFEGHSAAVLCVQWSPDKSSVFGSSAED  394 (496)
Q Consensus       347 ------------------------~i~iwd~~~~~~~~~~~~~--------~~~~~h~~~i~~l~~sp~~~~llas~~~d  394 (496)
                                              .|++||+.+      +...        ..+.+|...+.+++|+|++. ++++....
T Consensus       201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~  273 (719)
T 1z68_A          201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY------PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKR  273 (719)
T ss_dssp             CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC------HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEES
T ss_pred             cCCCCCccceeecCCCCCCCCCeeEEEEEECCC------CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEecc
Confidence                                    788999987      3322        22446888899999999976 55564322


Q ss_pred             ----CcEEEEE----CCCCCcccCCCCCCCCCCCeeE-EEecCCCCCcc-----eEEecCCCCcEEEEecCCCCCCCCCC
Q 010997          395 ----GLLNIWD----YEKVGKKVEQGPRTTNYPAGLF-FQHAGHRDKVV-----DFHWNASDPWTVVSVSDDCDSTGGGG  460 (496)
Q Consensus       395 ----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~-----~~~~~p~~~~l~~s~s~d~~sgg~Dg  460 (496)
                          ..|.+||    +.+. +..           .++ ....+|...|.     .++|+|++..+++..++.    +...
T Consensus       274 ~~~~~~l~~~d~~~~~~~g-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~----~g~~  337 (719)
T 1z68_A          274 VQNVSVLSICDFREDWQTW-DCP-----------KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK----DGYK  337 (719)
T ss_dssp             STTEEEEEEEEECSSSSSE-ECC-----------GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT----TSCE
T ss_pred             ccCeEEEEEEcccCCCCCC-ceE-----------EEEecccccCCceEccccCCccEECCCCCeEEEEEEcc----CCce
Confidence                2488889    6553 111           111 01135666666     889999998776643322    1134


Q ss_pred             eEEEeecC
Q 010997          461 TLQIWRMS  468 (496)
Q Consensus       461 ~i~iw~~~  468 (496)
                      .|.+|++.
T Consensus       338 ~l~~~~~~  345 (719)
T 1z68_A          338 HIHYIKDT  345 (719)
T ss_dssp             EEEEESSC
T ss_pred             EEEEEECC
Confidence            67777776

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=8.2e-19  Score=184.45  Aligned_cols=280  Identities=14%  Similarity=0.107  Sum_probs=174.1

Q ss_pred             ceeEEEecCCCCcEEEEEeC---------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          142 EVNRIRELPQNTKIVATHTD---------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .|.+++|+| ++++||+++.         ++.|++||+.++....          ...+   .. .+..++|+|||++|+
T Consensus        61 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~----------~~~l---~~-~~~~~~~SPDG~~la  125 (719)
T 1z68_A           61 NASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVR----------GNEL---PR-PIQYLCWSPVGSKLA  125 (719)
T ss_dssp             TCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----------SSCC---CS-SBCCEEECSSTTCEE
T ss_pred             ceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCcccc----------ceec---Cc-ccccceECCCCCEEE
Confidence            489999999 8888988876         7899999998872100          0011   12 478999999999999


Q ss_pred             EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCce---------eE
Q 010997          213 SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV---------ED  283 (496)
Q Consensus       213 sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------~~  283 (496)
                      ++. |+.|++||+.++........                               ......+.++...|         .+
T Consensus       126 ~~~-~~~i~~~~~~~g~~~~l~~~-------------------------------~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A          126 YVY-QNNIYLKQRPGDPPFQITFN-------------------------------GRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             EEE-TTEEEEESSTTSCCEECCCC-------------------------------CBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             EEE-CCeEEEEeCCCCCcEEEecC-------------------------------CCcCCeEcccccceeeeecccCccc
Confidence            886 88999999976543211100                               00011233443333         58


Q ss_pred             EEEccCCCceEEEEcCCC----------------------------------eEEEEEccCCCcc---ce---eeeccCC
Q 010997          284 VTFCPSSAQEFCSVGDDS----------------------------------CLILWDARVGTSP---VI---KVEKAHD  323 (496)
Q Consensus       284 l~~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~---~~---~~~~~~~  323 (496)
                      ++|+|+| ..|++++.|.                                  .|++||+.++...   .+   ..+..|.
T Consensus       174 ~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          174 LWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             EEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             EEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            9999999 6777776542                                  7889999876520   00   1123578


Q ss_pred             CCeEEEEecCCCCcEEEEEcCC----CcEEEEe----CCCCCCCCCCCCceEe----ccCCCCEE-----EEEEcCCCCC
Q 010997          324 ADLHCVDWNPLDDNLILTGSAD----NSVRMFD----RRNLTSNGVGSPINKF----EGHSAAVL-----CVQWSPDKSS  386 (496)
Q Consensus       324 ~~v~~i~~sp~~~~~l~sgs~d----g~i~iwd----~~~~~~~~~~~~~~~~----~~h~~~i~-----~l~~sp~~~~  386 (496)
                      ..+..++|+| ++.++++....    ..|.+||    +.+      +.....+    .+|...+.     .+.|+|+|+.
T Consensus       253 ~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  325 (719)
T 1z68_A          253 YYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQT------WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS  325 (719)
T ss_dssp             EEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSS------EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred             ceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCC------CceEEEEecccccCCceEccccCCccEECCCCCe
Confidence            8899999999 78777774432    2488899    665      3443333    35666666     8899999997


Q ss_pred             EEE-EEeCCCc--EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEE
Q 010997          387 VFG-SSAEDGL--LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQ  463 (496)
Q Consensus       387 lla-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~  463 (496)
                      ++. ++..+|.  |.+||+....                ...+..+...|..+.++ ++..+++++...   +..++.++
T Consensus       326 l~~~~~~~~g~~~l~~~~~~~~~----------------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~---~~~~~~~~  385 (719)
T 1z68_A          326 YYKIFSDKDGYKHIHYIKDTVEN----------------AIQITSGKWEAINIFRV-TQDSLFYSSNEF---EEYPGRRN  385 (719)
T ss_dssp             EEEEEECTTSCEEEEEESSCSTT----------------CEECSCSSSCEEEEEEE-CSSEEEEEESCG---GGCTTCBE
T ss_pred             EEEEEEccCCceEEEEEECCCCc----------------eEecccCceEEEEEEEE-eCCEEEEEEecC---CCCCceEE
Confidence            654 3445664  5566665421                12233445557777777 788877766540   01247899


Q ss_pred             EeecCCCCcCCchHHHH-HHHhccceEEEeccCC
Q 010997          464 IWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP  496 (496)
Q Consensus       464 iw~~~~~~~~~~~~~~~-~l~~h~~~v~~~~~sP  496 (496)
                      +|.+....-....+.+. .+.+|...+..++|+|
T Consensus       386 l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~  419 (719)
T 1z68_A          386 IYRISIGSYPPSKKCVTCHLRKERCQYYTASFSD  419 (719)
T ss_dssp             EEEEECSSSSCCEEESSTTTTTTTBCBEEEEECG
T ss_pred             EEEEeCCCCCCCceeccCccCCCCCceEEEEECC
Confidence            99876210000001111 1333555666676665

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=1.2e-18  Score=165.12  Aligned_cols=246  Identities=12%  Similarity=0.114  Sum_probs=167.8

Q ss_pred             cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC-cceeeeecCCCCce-EEecCCCcEEEEecCCcccc
Q 010997          154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-AEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~-~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      ++|++++.++.|.+||+.++            +....+...... .+.+++|+|+++++ ++++.++.|.+||+.++...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~   69 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             cEEEEcCCCCeEEEEECCCC------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE
Confidence            57899999999999999877            334444432211 25789999999765 56677899999999765321


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-c----CCCceeEEEEccCCCceEEEEc--------
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G----HEDTVEDVTFCPSSAQEFCSVG--------  298 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----h~~~v~~l~~~~~~~~~l~s~~--------  298 (496)
                                                              ..+. +    |...+.+++|+|++ ..+++++        
T Consensus        70 ----------------------------------------~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~  108 (337)
T 1pby_B           70 ----------------------------------------GRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELT  108 (337)
T ss_dssp             ----------------------------------------EEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSS
T ss_pred             ----------------------------------------eeEEcCCcccccccccceEECCCC-CEEEEEecccccccc
Confidence                                                    1111 1    12256789999999 5666664        


Q ss_pred             ----CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          299 ----DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       299 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                          .++.|.+||+.+++  ...... ....+.+++|+| ++.+|+++  ++.|.+||+.+      +..+..+..+...
T Consensus       109 ~~~~~~~~i~v~d~~~~~--~~~~~~-~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~------~~~~~~~~~~~~~  176 (337)
T 1pby_B          109 HFEVQPTRVALYDAETLS--RRKAFE-APRQITMLAWAR-DGSKLYGL--GRDLHVMDPEA------GTLVEDKPIQSWE  176 (337)
T ss_dssp             CEEECCCEEEEEETTTTE--EEEEEE-CCSSCCCEEECT-TSSCEEEE--SSSEEEEETTT------TEEEEEECSTTTT
T ss_pred             cccccCceEEEEECCCCc--EEEEEe-CCCCcceeEECC-CCCEEEEe--CCeEEEEECCC------CcEeeeeeccccC
Confidence                57999999998766  333332 355688999999 88877777  68999999988      5666666544311


Q ss_pred             EEEEEEcCCCCCEEEEEeCCC-----------------------cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDG-----------------------LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  431 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  431 (496)
                       ..+.|+|++..+++++..++                       .|.+||+.....             . ......+..
T Consensus       177 -~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-------------~-~~~~~~~~~  241 (337)
T 1pby_B          177 -AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-------------A-MREVRIMDV  241 (337)
T ss_dssp             -TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-------------E-EEEEEECSS
T ss_pred             -CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc-------------e-EeecCCCCC
Confidence             13378999987665554444                       368899877411             1 233445666


Q ss_pred             CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .+.+++|+|++.+++++          ++.|++||+.      +++.+..+..+ ..+.+++|+|
T Consensus       242 ~~~~~~~s~dg~~l~~~----------~~~v~~~d~~------~~~~~~~~~~~-~~~~~~~~s~  289 (337)
T 1pby_B          242 FYFSTAVNPAKTRAFGA----------YNVLESFDLE------KNASIKRVPLP-HSYYSVNVST  289 (337)
T ss_dssp             CEEEEEECTTSSEEEEE----------ESEEEEEETT------TTEEEEEEECS-SCCCEEEECT
T ss_pred             ceeeEEECCCCCEEEEe----------CCeEEEEECC------CCcCcceecCC-CceeeEEECC
Confidence            78899999999887754          3899999998      34443333322 3456777775

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=6.6e-18  Score=163.73  Aligned_cols=255  Identities=13%  Similarity=0.109  Sum_probs=160.4

Q ss_pred             EecCCCceeE-----EEecCCCCcEEEEEeC-CC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC
Q 010997          136 TIIHPGEVNR-----IRELPQNTKIVATHTD-SP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT  207 (496)
Q Consensus       136 ~~~h~~~V~~-----l~~~p~~~~~lat~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~  207 (496)
                      +..|.+.+..     .+|+| +++.||.++. +|  .|.+||+.++            +......++.. .+.++.|+|+
T Consensus        26 lt~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~g~~~l~~~d~~~g------------~~~~lt~~~~~-~~~~~~~spd   91 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTR-DGSKLLFGGAFDGPWNYYLLDLNTQ------------VATQLTEGRGD-NTFGGFLSPD   91 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTC------------EEEECCCSSCB-CSSSCEECTT
T ss_pred             ecCCcccccchhhcCccCCC-CCCEEEEEEcCCCCceEEEEeCCCC------------ceEEeeeCCCC-CccceEEcCC
Confidence            3445555555     78999 7888887776 67  4888898876            33333344444 4557899999


Q ss_pred             CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE--
Q 010997          208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT--  285 (496)
Q Consensus       208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--  285 (496)
                      +++|+.++.++.|.+||+.++...                                        ..+..+...+....  
T Consensus        92 g~~l~~~~~~~~l~~~d~~~g~~~----------------------------------------~~~~~~~~~~~~~~~~  131 (388)
T 3pe7_A           92 DDALFYVKDGRNLMRVDLATLEEN----------------------------------------VVYQVPAEWVGYGTWV  131 (388)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEE----------------------------------------EEEECCTTEEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcce----------------------------------------eeeechhhccccccee
Confidence            999999999999999999865321                                        22333444443333  


Q ss_pred             EccCCCceEEE----------------------EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc
Q 010997          286 FCPSSAQEFCS----------------------VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS  343 (496)
Q Consensus       286 ~~~~~~~~l~s----------------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs  343 (496)
                      ++|++ .+++.                      ...+..|.+||+.+++   ...+..+...+..++|+|.++..|+..+
T Consensus       132 ~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~~~~~~~~~~sp~dg~~l~~~~  207 (388)
T 3pe7_A          132 ANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---STVILQENQWLGHPIYRPYDDSTVAFCH  207 (388)
T ss_dssp             ECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---EEEEEEESSCEEEEEEETTEEEEEEEEE
T ss_pred             ECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---eEEeecCCccccccEECCCCCCEEEEEE
Confidence            47877 45543                      2244789999998876   2333456678999999994566676665


Q ss_pred             CC------CcEEEEeCCCCCCCCCCCCceEeccCC--CCEEEEEEcCCCCCEEEEEeCCC----cEEEEECCCCCcccCC
Q 010997          344 AD------NSVRMFDRRNLTSNGVGSPINKFEGHS--AAVLCVQWSPDKSSVFGSSAEDG----LLNIWDYEKVGKKVEQ  411 (496)
Q Consensus       344 ~d------g~i~iwd~~~~~~~~~~~~~~~~~~h~--~~i~~l~~sp~~~~llas~~~dg----~i~iwd~~~~~~~~~~  411 (496)
                      .+      ..|.++|+..       .....+..+.  ..+..++|+|+|+.|+..+..++    .|.+||+.....    
T Consensus       208 ~~~~~~~~~~l~~~d~~~-------~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~----  276 (388)
T 3pe7_A          208 EGPHDLVDARMWLINEDG-------TNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN----  276 (388)
T ss_dssp             CSCTTTSSCSEEEEETTS-------CCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE----
T ss_pred             ecCCCCCcceEEEEeCCC-------CceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce----
Confidence            43      3788888764       3344554444  35788999999997644443322    399999987421    


Q ss_pred             CCCCCCCCCeeEEEecCCCC---CcceEEecCCCCcEEEEecCCC-CCCCCCCeEEEeecC
Q 010997          412 GPRTTNYPAGLFFQHAGHRD---KVVDFHWNASDPWTVVSVSDDC-DSTGGGGTLQIWRMS  468 (496)
Q Consensus       412 ~~~~~~~~~~~~~~~~~h~~---~V~~~~~~p~~~~l~~s~s~d~-~sgg~Dg~i~iw~~~  468 (496)
                               ..+....++..   ....++|+|+|..++++..+.. .+++.+..|++|++.
T Consensus       277 ---------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~  328 (388)
T 3pe7_A          277 ---------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK  328 (388)
T ss_dssp             ---------EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred             ---------EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence                     23333333111   1233579999998876543210 012446799999998

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.77  E-value=3.5e-16  Score=148.00  Aligned_cols=250  Identities=13%  Similarity=0.136  Sum_probs=173.7

Q ss_pred             CCceeEEEecCCCCcEEEEEeCC------------------------CcEEEEeCCCCCCccccCCCCCCCCceEEe-cC
Q 010997          140 PGEVNRIRELPQNTKIVATHTDS------------------------PDVLIWDVEAQPNRHAVLGATNSRPDLILT-GH  194 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-~h  194 (496)
                      -+.|..|+++| +++++++...+                        +.|.+||..++            +....+. ++
T Consensus        23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g------------~~~~~~~~~~   89 (329)
T 3fvz_A           23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA------------EILQSSGKNL   89 (329)
T ss_dssp             CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC------------CEEEEECTTT
T ss_pred             cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC------------eEEeccCCCc
Confidence            35799999999 78888888877                        47999998776            2222332 23


Q ss_pred             CCCcceeeeecCCCCceEEecCCCcEEEEecCCcc-ccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997          195 QDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHI-TSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  273 (496)
Q Consensus       195 ~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (496)
                      -. ...+++++|+|+++++...++.|++||..... .........   ..                            ..
T Consensus        90 ~~-~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~---~~----------------------------g~  137 (329)
T 3fvz_A           90 FY-LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSM---QP----------------------------GS  137 (329)
T ss_dssp             CS-SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTT---BC----------------------------CC
T ss_pred             cC-CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccC---CC----------------------------CC
Confidence            23 46899999999988888889999999986431 100000000   00                            00


Q ss_pred             eecCCCceeEEEEcc-CCCceEEEEc-CCCeEEEEEccCCCccceeeecc----------CCCCeEEEEecCCCCcEEEE
Q 010997          274 YNGHEDTVEDVTFCP-SSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKA----------HDADLHCVDWNPLDDNLILT  341 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~-~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~i~~sp~~~~~l~s  341 (496)
                      -.++.....+|+++| ++ .++++.+ .++.|++||. .+.  ....+..          +-.....|+++|..+.++++
T Consensus       138 ~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~  213 (329)
T 3fvz_A          138 DQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGK--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA  213 (329)
T ss_dssp             STTCCSSEEEEEECTTTC-CEEEEECSSCCEEEEECT-TSC--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE
T ss_pred             CccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCC--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE
Confidence            013445688999999 55 7888886 6999999994 444  3333322          22348999999933888888


Q ss_pred             EcCCCcEEEEeCCCCCCCCCCCCceEec--cCCCCEEEEEEcCCCCCEEEEE-------eCCCcEEEEECCCCCcccCCC
Q 010997          342 GSADNSVRMFDRRNLTSNGVGSPINKFE--GHSAAVLCVQWSPDKSSVFGSS-------AEDGLLNIWDYEKVGKKVEQG  412 (496)
Q Consensus       342 gs~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~llas~-------~~dg~i~iwd~~~~~~~~~~~  412 (496)
                      ...++.|++||..+      +..+..+.  .+...+..++|+| +. ++++.       ..+..|++||+...       
T Consensus       214 d~~~~~I~~~~~~~------G~~~~~~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~~~~~g-------  278 (329)
T 3fvz_A          214 DRENGRIQCFKTDT------KEFVREIKHASFGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVMNFSSG-------  278 (329)
T ss_dssp             ETTTTEEEEEETTT------CCEEEEECCTTTTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEEETTTC-------
T ss_pred             ECCCCEEEEEECCC------CcEEEEEeccccCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEEEcCCC-------
Confidence            88999999999986      67777773  4567899999999 32 33333       33458999998874       


Q ss_pred             CCCCCCCCeeEEEe---cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          413 PRTTNYPAGLFFQH---AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       413 ~~~~~~~~~~~~~~---~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                              .++..+   .++...+.+++++|++ .++++...+       +.|++|++..
T Consensus       279 --------~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~-------~~I~~~~~~~  322 (329)
T 3fvz_A          279 --------EIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHT-------NTVWKFTLTE  322 (329)
T ss_dssp             --------CEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSS-------CCEEEEEEEE
T ss_pred             --------eEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCC-------CEEEEEeCCc
Confidence                    233333   3566778999999988 677765554       8999999873

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=8e-17  Score=154.59  Aligned_cols=272  Identities=10%  Similarity=0.051  Sum_probs=162.5

Q ss_pred             cEEEEEe----CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC----CcEEEEec
Q 010997          154 KIVATHT----DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD----KSVVLWSI  225 (496)
Q Consensus       154 ~~lat~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D----g~i~iwd~  225 (496)
                      .+++.|+    .++.|.+|.+......        .......  +.. ....++|+|++++|++++.+    +.|.+|++
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~--------~~~~~~~--~~~-~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~   82 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGE--------SLPLSDA--EVA-NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAF   82 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCC--------EEEEEEE--ECS-CCCSEEECTTSSEEEEEECCSSTTCEEEEEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCC--------EEEeecc--cCC-CCceEEECCCCCEEEEEEccCCCCCcEEEEEE
Confidence            3455553    3568999987543110        1112222  444 46789999999999988875    89999998


Q ss_pred             CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997          226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL  305 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  305 (496)
                      +....                                    ....+.....+......+++  ++..++++...++.|.+
T Consensus        83 ~~~~g------------------------------------~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           83 DKEKG------------------------------------TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ETTTT------------------------------------EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred             eCCCC------------------------------------cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence            64210                                    00111233334556677777  66445555557899999


Q ss_pred             EEccCCCcc--ceeee--c--------cCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCC-C------c
Q 010997          306 WDARVGTSP--VIKVE--K--------AHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS-P------I  365 (496)
Q Consensus       306 wd~~~~~~~--~~~~~--~--------~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~-~------~  365 (496)
                      |++......  .....  .        .+...+.+++|+| ++.+| +++..++.|.+|++.......... .      .
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~  203 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE  203 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence            999754311  11110  0        1223468899999 88755 455568999999988632000001 1      1


Q ss_pred             eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997          366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT  445 (496)
Q Consensus       366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l  445 (496)
                      .....+...+..++|+|+++++++++..++.|.+||+... ...         ....+.....+......++|+|++.++
T Consensus       204 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g-~~~---------~~~~~~~~~~~~~~~~~i~~spdg~~l  273 (361)
T 3scy_A          204 AFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG-MLD---------EIQTVAADTVNAQGSGDIHLSPDGKYL  273 (361)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT-EEE---------EEEEEESCSSCCCCEEEEEECTTSSEE
T ss_pred             ceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC-ceE---------EeEEEecCCCCCCCcccEEECCCCCEE
Confidence            1122345668899999999977666657999999999852 110         001122223344556899999999988


Q ss_pred             EEEecCCCCCCCCCCeEEEeecCCCCcCCchH--HHHHHHhccceEEEeccCC
Q 010997          446 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDE--VLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       446 ~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~--~~~~l~~h~~~v~~~~~sP  496 (496)
                      +++...+      ++.|.+|++...    .+.  .+..+.. ...+..++|+|
T Consensus       274 ~v~~~~~------~~~i~v~~~~~~----~g~~~~~~~~~~-g~~~~~~~~sp  315 (361)
T 3scy_A          274 YASNRLK------ADGVAIFKVDET----NGTLTKVGYQLT-GIHPRNFIITP  315 (361)
T ss_dssp             EEEECSS------SCEEEEEEECTT----TCCEEEEEEEEC-SSCCCEEEECT
T ss_pred             EEECCCC------CCEEEEEEEcCC----CCcEEEeeEecC-CCCCceEEECC
Confidence            7765540      389999999621    111  2222222 23456777776

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=1e-16  Score=168.81  Aligned_cols=250  Identities=10%  Similarity=0.122  Sum_probs=164.9

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCc----ceeeeecCCCCceEEecC
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA----EFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~----v~~l~~~p~~~~l~sg~~  216 (496)
                      .....++|+| ++.+|+++  ||.|++||+.++            +....+.+|....    ...+.|+|||++|+.++.
T Consensus        17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~   81 (740)
T 4a5s_A           17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYG------------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYN   81 (740)
T ss_dssp             CCCCCEEECS-SSEEEEEE--TTEEEEEETTTC------------CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred             ccccccEECC-CCcEEEEc--CCcEEEEECCCC------------ceEEEEechhhhhhcccccceEECCCCCEEEEEEC
Confidence            3466899999 88899886  899999999988            3445566665421    123788999999999887


Q ss_pred             C---------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997          217 D---------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  287 (496)
Q Consensus       217 D---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  287 (496)
                      +         +.+.+||+.++..                                         ..+..|...+..++||
T Consensus        82 ~~~~~r~~~~~~~~~~d~~~~~~-----------------------------------------~~l~~~~~~~~~~~~S  120 (740)
T 4a5s_A           82 YVKQWRHSYTASYDIYDLNKRQL-----------------------------------------ITEERIPNNTQWVTWS  120 (740)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEE-----------------------------------------CCSSCCCTTEEEEEEC
T ss_pred             CeeeEEEccceEEEEEECCCCcE-----------------------------------------EEcccCCCcceeeEEC
Confidence            6         5667999987543                                         2234566789999999


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCe-----------------EEEEecCCCCcEEEEEcCCC----
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL-----------------HCVDWNPLDDNLILTGSADN----  346 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-----------------~~i~~sp~~~~~l~sgs~dg----  346 (496)
                      |+| ..|+.+ .|+.|++||+.++... ..+..++...+                 ..+.||| ++..||.++.|.    
T Consensus       121 PdG-~~la~~-~~~~i~~~~~~~~~~~-~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~la~~~~d~~~v~  196 (740)
T 4a5s_A          121 PVG-HKLAYV-WNNDIYVKIEPNLPSY-RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVP  196 (740)
T ss_dssp             SST-TCEEEE-ETTEEEEESSTTSCCE-ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCC
T ss_pred             CCC-CEEEEE-ECCeEEEEECCCCceE-EEcCCCCccceecCcccccccchhcCCCcceEECC-CCCEEEEEEEcccCCc
Confidence            999 567766 4689999999877621 11222332222                 3589999 999998876432    


Q ss_pred             --------------------------------cEEEEeCCC---CCCCCCCCCceEec------cCCCCEEEEEEcCCCC
Q 010997          347 --------------------------------SVRMFDRRN---LTSNGVGSPINKFE------GHSAAVLCVQWSPDKS  385 (496)
Q Consensus       347 --------------------------------~i~iwd~~~---~~~~~~~~~~~~~~------~h~~~i~~l~~sp~~~  385 (496)
                                                      .|++||+.+   ..    ......+.      +|...+..++|+|+|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~wspdg~  272 (740)
T 4a5s_A          197 LIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT----NATSIQITAPASMLIGDHYLCDVTWATQER  272 (740)
T ss_dssp             EEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS----CCCEEEECCCHHHHTSCEEEEEEEEEETTE
T ss_pred             eEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC----cceEEEecCCccCCCCCeEEEEEEEeCCCe
Confidence                                            366677664   21    00233333      3777899999999998


Q ss_pred             CEEEEEe---CCCcEEEEECCCCCc---ccCCCCCCCCCCCeeEEEecCCCCCcc-----eEEecCCCCcEEEEecCCCC
Q 010997          386 SVFGSSA---EDGLLNIWDYEKVGK---KVEQGPRTTNYPAGLFFQHAGHRDKVV-----DFHWNASDPWTVVSVSDDCD  454 (496)
Q Consensus       386 ~llas~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~V~-----~~~~~p~~~~l~~s~s~d~~  454 (496)
                      .++....   .+..|.+||+.++..   ...         ...+ ...+|...|.     ..+|+|+|..++...++.  
T Consensus       273 ~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~---------~~~l-~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~--  340 (740)
T 4a5s_A          273 ISLQWLRRIQNYSVMDICDYDESSGRWNCLV---------ARQH-IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE--  340 (740)
T ss_dssp             EEEEEEESSTTEEEEEEEEEETTTTEEEECG---------GGCE-EEECSSSCSSSSSCCCCEECTTSSEEEEEEECT--
T ss_pred             EEEEEeCCCCCEEEEEEEECCCCccccceeE---------EEEe-eeccCCceEccCcCCCceEcCCCCEEEEEEEcC--
Confidence            4332322   234799999987420   000         0111 1134555544     789999998876455543  


Q ss_pred             CCCCCCeEEEeecC
Q 010997          455 STGGGGTLQIWRMS  468 (496)
Q Consensus       455 sgg~Dg~i~iw~~~  468 (496)
                      .|  ...|.+|++.
T Consensus       341 ~G--~~~l~~~~~~  352 (740)
T 4a5s_A          341 EG--YRHICYFQID  352 (740)
T ss_dssp             TS--CEEEEEEETT
T ss_pred             CC--ceEEEEEECC
Confidence            22  4678888876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.73  E-value=1.3e-16  Score=163.40  Aligned_cols=271  Identities=10%  Similarity=0.015  Sum_probs=179.7

Q ss_pred             CCcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCC-Cce
Q 010997           65 WPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHP-GEV  143 (496)
Q Consensus        65 wps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V  143 (496)
                      .|..++.+.|+        ..+|.++...    +..+.||.+.-                      -+..++..|. ..|
T Consensus        22 ~~~~~~~~~~D--------G~~la~~s~~----~g~~~lw~~~~----------------------g~~~~lt~~~~~~~   67 (582)
T 3o4h_A           22 VEKYSLQGVVD--------GDKLLVVGFS----EGSVNAYLYDG----------------------GETVKLNREPINSV   67 (582)
T ss_dssp             SCEEEEEEEET--------TTEEEEEEEE----TTEEEEEEEET----------------------TEEEECCSSCCSEE
T ss_pred             cchheeecCCC--------CCeEEEEEcc----CCceeEEEEcC----------------------CCcEeeeccccccc
Confidence            37778887775        1355554322    34577776421                      0112334455 689


Q ss_pred             eEEEecCCCCcEEEEEeC---CCcEEEEeCCC--CCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC--ceEEecC
Q 010997          144 NRIRELPQNTKIVATHTD---SPDVLIWDVEA--QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP--YVLSGGK  216 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~--~l~sg~~  216 (496)
                      ..++|+| + +++++++.   +....||.+..  ..           . ...+..+..  +...+|+|+++  .+++++.
T Consensus        68 ~~~~~sp-d-~~l~~~~~~~g~~~~~l~~~~~~~~g-----------~-~~~l~~~~~--~~~~~~s~dg~~~~~~s~~~  131 (582)
T 3o4h_A           68 LDPHYGV-G-RVILVRDVSKGAEQHALFKVNTSRPG-----------E-EQRLEAVKP--MRILSGVDTGEAVVFTGATE  131 (582)
T ss_dssp             CEECTTC-S-EEEEEEECSTTSCCEEEEEEETTSTT-----------C-CEECTTSCS--BEEEEEEECSSCEEEEEECS
T ss_pred             ccccCCC-C-eEEEEeccCCCCcceEEEEEeccCCC-----------c-cccccCCCC--ceeeeeCCCCCeEEEEecCC
Confidence            9999999 6 78887775   45566766544  21           0 112222222  34668888876  4445554


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      | .+.+||+.++..                                         ..+..+..  .+++|+|+| ..+++
T Consensus       132 ~-~~~l~d~~~g~~-----------------------------------------~~l~~~~~--~~~~~spDG-~~la~  166 (582)
T 3o4h_A          132 D-RVALYALDGGGL-----------------------------------------RELARLPG--FGFVSDIRG-DLIAG  166 (582)
T ss_dssp             S-CEEEEEEETTEE-----------------------------------------EEEEEESS--CEEEEEEET-TEEEE
T ss_pred             C-CceEEEccCCcE-----------------------------------------EEeecCCC--ceEEECCCC-CEEEE
Confidence            4 455999876432                                         22222222  789999999 67887


Q ss_pred             EcCC----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC--cEEEEeCCCCCCCCCCCCceEecc
Q 010997          297 VGDD----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN--SVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       297 ~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      ++.+    +.|++||+.+++   ...+..|...+..++|+| ++..|+++..++  .|++||+.+      +... .+..
T Consensus       167 ~~~~~~~~~~i~~~d~~~g~---~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~------~~~~-~~~~  235 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNLSSGG---LRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRD------GSVE-DLEL  235 (582)
T ss_dssp             EEEEETTEEEEEEEETTTCC---CEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTT------CCEE-ECCC
T ss_pred             EEEcCCCCeEEEEEcCCCCC---ceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCC------CcEE-EccC
Confidence            7766    789999998877   234567888899999999 999999888898  899999987      5555 6777


Q ss_pred             CCCCEEEEE--------EcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCC
Q 010997          371 HSAAVLCVQ--------WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD  442 (496)
Q Consensus       371 h~~~i~~l~--------~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~  442 (496)
                      |...+..++        |+|+| .++++++.|+.++||++  + +.              ..   .+.+.|.+++|+ ++
T Consensus       236 ~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~--g-~~--------------~~---~~~~~v~~~~~s-dg  293 (582)
T 3o4h_A          236 PSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID--G-ER--------------VE---APQGNHGRVVLW-RG  293 (582)
T ss_dssp             SCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET--T-EE--------------EC---CCSSEEEEEEEE-TT
T ss_pred             CCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE--C-Ce--------------ec---cCCCceEEEEec-CC
Confidence            777777777        99999 58889999999999999  2 21              11   223568899999 66


Q ss_pred             CcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          443 PWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       443 ~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .. +++++.+    ..-..|.+|+..
T Consensus       294 ~~-l~~~s~~----~~p~~l~~~d~~  314 (582)
T 3o4h_A          294 KL-VTSHTSL----STPPRIVSLPSG  314 (582)
T ss_dssp             EE-EEEEEET----TEEEEEEEETTC
T ss_pred             EE-EEEEcCC----CCCCeEEEEcCC
Confidence            54 4554433    111346666654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=5.5e-15  Score=136.80  Aligned_cols=238  Identities=12%  Similarity=0.146  Sum_probs=166.4

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe------cCCCCcceeeee-cCCCCc
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT------GHQDNAEFALAM-CPTEPY  210 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~------~h~~~~v~~l~~-~p~~~~  210 (496)
                      +|-..+.+++++| +++++++...++.|.+||....             ....+.      +|.. .+.++++ .+++.+
T Consensus        27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~-------------~~~~~~~~~~~~~~~~-~p~~i~~~~~~g~l   91 (286)
T 1q7f_A           27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGR-------------FKFQFGECGKRDSQLL-YPNRVAVVRNSGDI   91 (286)
T ss_dssp             TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSC-------------EEEEECCBSSSTTCBS-SEEEEEEETTTTEE
T ss_pred             CccCCCceEEECC-CCCEEEEECCCCEEEEECCCCc-------------EEEEecccCCCccccc-CceEEEEEcCCCeE
Confidence            3455789999999 7788888888999999997633             112221      2333 4678999 567776


Q ss_pred             eEEecC-CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEcc
Q 010997          211 VLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCP  288 (496)
Q Consensus       211 l~sg~~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~  288 (496)
                      +++... ++.|.+||... ...                                        ..+. .+...+.+++++|
T Consensus        92 ~v~~~~~~~~i~~~d~~g-~~~----------------------------------------~~~~~~~~~~~~~i~~~~  130 (286)
T 1q7f_A           92 IVTERSPTHQIQIYNQYG-QFV----------------------------------------RKFGATILQHPRGVTVDN  130 (286)
T ss_dssp             EEEECGGGCEEEEECTTS-CEE----------------------------------------EEECTTTCSCEEEEEECT
T ss_pred             EEEcCCCCCEEEEECCCC-cEE----------------------------------------EEecCccCCCceEEEEeC
Confidence            666643 89999999432 111                                        1111 2335678999999


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCCccceeeec--cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  366 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  366 (496)
                      ++ .++++...++.|.+||.. +.  ....+.  .+...+..|+++| +++++++.+.++.|++||..       +..+.
T Consensus       131 ~g-~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~-------g~~~~  198 (286)
T 1q7f_A          131 KG-RIIVVECKVMRVIIFDQN-GN--VLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-------GQYLR  198 (286)
T ss_dssp             TS-CEEEEETTTTEEEEECTT-SC--EEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-------CCEEE
T ss_pred             CC-CEEEEECCCCEEEEEcCC-CC--EEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCC-------CCEEE
Confidence            98 688888888999999964 33  233332  3456789999999 88888888889999999975       35566


Q ss_pred             EeccC--CCCEEEEEEcCCCCCEEEEEeCCC-cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC--CCCcceEEecCC
Q 010997          367 KFEGH--SAAVLCVQWSPDKSSVFGSSAEDG-LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--RDKVVDFHWNAS  441 (496)
Q Consensus       367 ~~~~h--~~~i~~l~~sp~~~~llas~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~~~~~p~  441 (496)
                      .+..+  ...+..++++|+|. ++++...++ .|.+||...                ..+..+..+  ...+.+++++|+
T Consensus       199 ~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g----------------~~~~~~~~~~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          199 QIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG----------------QLISALESKVKHAQCFDVALMDD  261 (286)
T ss_dssp             EESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS----------------CEEEEEEESSCCSCEEEEEEETT
T ss_pred             EEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCC----------------CEEEEEcccCCCCcceeEEECCC
Confidence            66543  36789999999996 677777675 999999643                122222222  234678999998


Q ss_pred             CCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          442 DPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       442 ~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      +. ++++. .       |++|++|++..
T Consensus       262 g~-l~vs~-~-------~~~v~v~~~~~  280 (286)
T 1q7f_A          262 GS-VVLAS-K-------DYRLYIYRYVQ  280 (286)
T ss_dssp             TE-EEEEE-T-------TTEEEEEECSC
T ss_pred             Cc-EEEEC-C-------CCeEEEEEccc
Confidence            75 55542 2       48999999863

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.71  E-value=4.5e-16  Score=161.93  Aligned_cols=261  Identities=11%  Similarity=0.045  Sum_probs=165.9

Q ss_pred             EecCCCceeEEEecCCCCcEEEEE--eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcce---------eeee
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATH--TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEF---------ALAM  204 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~---------~l~~  204 (496)
                      ..+|...|..+++++ +.-++++.  +.++...||....+.            ....+..|.. .+.         ...|
T Consensus        19 ~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~l~~~~~-~~~~~~~~~~~~~~~~   84 (662)
T 3azo_A           19 VASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADG------------AEESALPAPW-NVRNRVFEYSGFPWAG   84 (662)
T ss_dssp             HHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTS------------CEEESSCTTC-CBCCCGGGTCCCCEEE
T ss_pred             HhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCC------------CcceeCCCCc-cccccccccCCcccee
Confidence            347889999999998 66667776  568899999964331            1223334432 223         4545


Q ss_pred             c--CCCCc-eEEecC-CCcEEEEecC--C-ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-
Q 010997          205 C--PTEPY-VLSGGK-DKSVVLWSIQ--D-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-  276 (496)
Q Consensus       205 ~--p~~~~-l~sg~~-Dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  276 (496)
                      +  |||++ |+.++. +..|.+|++.  . +..                                         ..+.. 
T Consensus        85 ~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-----------------------------------------~~l~~~  123 (662)
T 3azo_A           85 VPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-----------------------------------------RPLTPV  123 (662)
T ss_dssp             ECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-----------------------------------------EECSCC
T ss_pred             eeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-----------------------------------------EeccCC
Confidence            5  99998 775543 5566666654  1 111                                         22222 


Q ss_pred             ----CCCceeEEEEccCCCceEEEEcCC----------CeEEEEEccC------CCccceeeec-cCCCCeEEEEecCCC
Q 010997          277 ----HEDTVEDVTFCPSSAQEFCSVGDD----------SCLILWDARV------GTSPVIKVEK-AHDADLHCVDWNPLD  335 (496)
Q Consensus       277 ----h~~~v~~l~~~~~~~~~l~s~~~d----------g~i~iwd~~~------~~~~~~~~~~-~~~~~v~~i~~sp~~  335 (496)
                          |...+.+++|+|+| ..|++++.+          ..|.+||+.+      +.   ...+. .+...+..++|+| +
T Consensus       124 ~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~Sp-D  198 (662)
T 3azo_A          124 SAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---VRELSDDAHRFVTGPRLSP-D  198 (662)
T ss_dssp             CCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---SEESSCSCSSEECCCEECT-T
T ss_pred             ccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---eeEEEecCCCcccCceECC-C
Confidence                56678899999999 677777766          5899999987      43   23333 4556788899999 9


Q ss_pred             CcEEEEEcCC--------CcEEEEeCC-CCCCCCCC---CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEE
Q 010997          336 DNLILTGSAD--------NSVRMFDRR-NLTSNGVG---SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWD  401 (496)
Q Consensus       336 ~~~l~sgs~d--------g~i~iwd~~-~~~~~~~~---~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd  401 (496)
                      +.+|+.++.+        ..|.+||+. +      +   ........|...+..++|+|+|+ ++++++.++  .|.+||
T Consensus       199 G~~la~~~~~~~~~~~~~~~i~~~d~~~~------g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~  271 (662)
T 3azo_A          199 GRQAVWLAWDHPRMPWEGTELKTARVTED------GRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVD  271 (662)
T ss_dssp             SSEEEEEEECTTCCTTTCEEEEEEEECTT------SCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEEC
T ss_pred             CCEEEEEECCCCCCCCCCcEEEEEEECCC------CcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEE
Confidence            9999887754        379999998 4      3   23333344578899999999999 777888888  455555


Q ss_pred             CCCCCcccCCCCCCCCCCCeeEEEecCCCC--------CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcC
Q 010997          402 YEKVGKKVEQGPRTTNYPAGLFFQHAGHRD--------KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR  473 (496)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~  473 (496)
                      +... +..              ....++..        .+..++|+|++. ++++       ++. +.++||.+...   
T Consensus       272 ~~~~-~~~--------------~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~-------~~~-~~~~l~~~d~~---  324 (662)
T 3azo_A          272 PATG-AAT--------------QLCRREEEFAGPLWTPGMRWFAPLANGL-IAVV-------HGK-GAAVLGILDPE---  324 (662)
T ss_dssp             TTTC-CEE--------------ESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEE-------EBS-SSCEEEEEETT---
T ss_pred             CCCC-cee--------------ecccccccccCccccccCceEeEeCCCE-EEEE-------EEc-CccEEEEEECC---
Confidence            5442 111              00111111        156788888766 4443       333 67888854310   


Q ss_pred             CchHHHHHHHhccceEEEe
Q 010997          474 PQDEVLAELEKFKAHVISC  492 (496)
Q Consensus       474 ~~~~~~~~l~~h~~~v~~~  492 (496)
                       .++ +..+..|.+.+..+
T Consensus       325 -~~~-~~~l~~~~~~~~~~  341 (662)
T 3azo_A          325 -SGE-LVDAAGPWTEWAAT  341 (662)
T ss_dssp             -TTE-EEECCSSCCEEEEE
T ss_pred             -CCc-EEEecCCCCeEEEE
Confidence             222 44556666666655

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.70  E-value=5.1e-16  Score=149.19  Aligned_cols=212  Identities=7%  Similarity=0.035  Sum_probs=135.8

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecC-CccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQ-DHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  276 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (496)
                      .+..++|+|++++|++++.+ .|.+|++. ++....                                      +.....
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~--------------------------------------~~~~~~   81 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH--------------------------------------EASHPI   81 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE--------------------------------------EEEEEC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE--------------------------------------eeEeec
Confidence            36789999999999998888 99999986 432210                                      001111


Q ss_pred             CCCceeEEEEccCCCc-eEEEEc-------------CCCeEEEEEccC-CCccceeeec----cCCCCeEEEEecCCCCc
Q 010997          277 HEDTVEDVTFCPSSAQ-EFCSVG-------------DDSCLILWDARV-GTSPVIKVEK----AHDADLHCVDWNPLDDN  337 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~-~l~s~~-------------~dg~i~iwd~~~-~~~~~~~~~~----~~~~~v~~i~~sp~~~~  337 (496)
                      + +.+..++|+|++.. +++++.             .+|.+.+|++.. +.  ......    .+...+.+++|+| +++
T Consensus        82 ~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~sp-dG~  157 (365)
T 1jof_A           82 G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK--LEKNVQNYEYQENTGIHGMVFDP-TET  157 (365)
T ss_dssp             C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC--EEEEEEEEECCTTCCEEEEEECT-TSS
T ss_pred             C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCc--CcceEeeEEeCCCCcceEEEECC-CCC
Confidence            1 22456889999932 344553             689999999974 44  222221    2456899999999 888


Q ss_pred             EEEEEc-CCCcEEEEeCC-CCCCCCCCCC--ceEec--cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC-CcccC
Q 010997          338 LILTGS-ADNSVRMFDRR-NLTSNGVGSP--INKFE--GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV-GKKVE  410 (496)
Q Consensus       338 ~l~sgs-~dg~i~iwd~~-~~~~~~~~~~--~~~~~--~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~-~~~~~  410 (496)
                      +|++++ .++.|++||+. +      ++.  +..+.  .|...+..++|+|+|++++++...++.|.+|++... ++...
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~------g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  231 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLAS------GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY  231 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTT------SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEEcCCCCEEEEEEECCC------CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            777665 46899999998 4      332  23333  246679999999999976655555789999987531 11000


Q ss_pred             CCCCCCCCCCeeEEEe----cCCCC------CcceEE-ecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          411 QGPRTTNYPAGLFFQH----AGHRD------KVVDFH-WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       411 ~~~~~~~~~~~~~~~~----~~h~~------~V~~~~-~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                              ....+..+    .+|..      .+..++ |+|++++++++...+  -....++|.+|++.
T Consensus       232 --------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~--~~~~~~~i~v~~~~  290 (365)
T 1jof_A          232 --------THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN--KFELQGYIAGFKLR  290 (365)
T ss_dssp             --------EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES--STTSCCEEEEEEEC
T ss_pred             --------ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC--CCCCCCeEEEEEEC
Confidence                    00011111    12232      478999 999999877654332  00112389999996

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.70  E-value=3.4e-15  Score=142.12  Aligned_cols=197  Identities=12%  Similarity=0.131  Sum_probs=136.7

Q ss_pred             ceeEEEecCCCCc-EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC-----CCcceeeeecCCCCceEEec
Q 010997          142 EVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-----DNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       142 ~V~~l~~~p~~~~-~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~-----~~~v~~l~~~p~~~~l~sg~  215 (496)
                      .+..++|+| +++ +++++..++.|.+||+.++            +....+..+.     ...+.+++|+|+|++|++++
T Consensus        44 ~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  110 (349)
T 1jmx_B           44 GPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTC------------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV  110 (349)
T ss_dssp             SSCEEEECT-TSSEEEEEETTTTEEEEEETTTT------------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             CCceeEECC-CCCEEEEEeCCCCcEEEEeCCCC------------cEEEEEEcccccccccccccceEECCCCCEEEEEc
Confidence            688999999 555 5566777899999999877            3333333221     12368999999999999888


Q ss_pred             CC------------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997          216 KD------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED  283 (496)
Q Consensus       216 ~D------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  283 (496)
                      .+            +.|.+||+.++....                                     .+..+. +...+.+
T Consensus       111 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-------------------------------------~~~~~~-~~~~~~~  152 (349)
T 1jmx_B          111 NPTQRLNDHYVVKPPRLEVFSTADGLEAK-------------------------------------PVRTFP-MPRQVYL  152 (349)
T ss_dssp             EEEEECSSCEEECCCEEEEEEGGGGGGBC-------------------------------------CSEEEE-CCSSCCC
T ss_pred             ccccccccccccCCCeEEEEECCCccccc-------------------------------------eeeecc-CCCcccc
Confidence            65            899999997643211                                     112222 2335888


Q ss_pred             EEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccC-----------------------------------------
Q 010997          284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-----------------------------------------  322 (496)
Q Consensus       284 l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------------------  322 (496)
                      ++|+|++ .+ ++++.  .|.+||+.+++  ....+..+                                         
T Consensus       153 ~~~s~dg-~l-~~~~~--~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  226 (349)
T 1jmx_B          153 MRAADDG-SL-YVAGP--DIYKMDVKTGK--YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP  226 (349)
T ss_dssp             EEECTTS-CE-EEESS--SEEEECTTTCC--EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred             eeECCCC-cE-EEccC--cEEEEeCCCCc--eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence            9999999 44 44443  49999998776  22222111                                         


Q ss_pred             ---------------------------CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997          323 ---------------------------DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  375 (496)
Q Consensus       323 ---------------------------~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i  375 (496)
                                                 ...+..++|+|.++.+++++  ++.|.+||+.+      ++.+..+.. ...+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~------~~~~~~~~~-~~~~  297 (349)
T 1jmx_B          227 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ------RKLIKAANL-DHTY  297 (349)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT------TEEEEEEEC-SSCC
T ss_pred             cccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc------CeEEEEEcC-CCCc
Confidence                                       11345667777456677777  88999999988      566666653 3457


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      .+++|+|++.+|+ +++.++.|.+||+.+.
T Consensus       298 ~~~~~s~dg~~l~-~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          298 YCVAFDKKGDKLY-LGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             CEEEECSSSSCEE-EESBSSEEEEEETTTT
T ss_pred             cceEECCCCCEEE-EecCCCeEEEEecccc
Confidence            7999999999876 4677899999999874

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.68  E-value=1.2e-15  Score=147.74  Aligned_cols=242  Identities=9%  Similarity=0.019  Sum_probs=152.3

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceee--eecCCCCceEEe-
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFAL--AMCPTEPYVLSG-  214 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l--~~~p~~~~l~sg-  214 (496)
                      +|...+..++|+| +++.|+.++.++.|++||+.++            +....+..+.. .+...  .++|++.+++.. 
T Consensus        78 ~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g------------~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~  143 (388)
T 3pe7_A           78 GRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATL------------EENVVYQVPAE-WVGYGTWVANSDCTKLVGIE  143 (388)
T ss_dssp             SSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTC------------CEEEEEECCTT-EEEEEEEEECTTSSEEEEEE
T ss_pred             CCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCC------------cceeeeechhh-cccccceeECCCCCeecccc
Confidence            3444555778999 8889999999999999999987            33334444443 23333  348888877642 


Q ss_pred             ---------------------cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997          215 ---------------------GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  273 (496)
Q Consensus       215 ---------------------~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (496)
                                           ..+..|.+||+.++..                                         ..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----------------------------------------~~  182 (388)
T 3pe7_A          144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----------------------------------------TV  182 (388)
T ss_dssp             EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----------------------------------------EE
T ss_pred             ccCcccccccccchhhhhhccCCcceEEEEECCCCce-----------------------------------------EE
Confidence                                 2346788888765422                                         34


Q ss_pred             eecCCCceeEEEEcc-CCCceEEEEcCC------CeEEEEEccCCCccceeeeccCC--CCeEEEEecCCCCcEEEEEcC
Q 010997          274 YNGHEDTVEDVTFCP-SSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAHD--ADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~--~~v~~i~~sp~~~~~l~sgs~  344 (496)
                      +..+...+..++|+| ++ ..|+.++.+      ..|.++|+....  . ..+..+.  ..+..++|+| ++..|+..+.
T Consensus       183 l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~--~-~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~  257 (388)
T 3pe7_A          183 ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTN--M-RKVKTHAEGESCTHEFWVP-DGSALVYVSY  257 (388)
T ss_dssp             EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCC--C-EESCCCCTTEEEEEEEECT-TSSCEEEEEE
T ss_pred             eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCc--e-EEeeeCCCCcccccceECC-CCCEEEEEec
Confidence            445666789999999 88 566665543      377788876554  2 2222333  3578899999 8876655333


Q ss_pred             -CC----cEEEEeCCCCCCCCCCC--CceEeccCCCC---EEEEEEcCCCCCEEEEE--------eCCCcEEEEECCCCC
Q 010997          345 -DN----SVRMFDRRNLTSNGVGS--PINKFEGHSAA---VLCVQWSPDKSSVFGSS--------AEDGLLNIWDYEKVG  406 (496)
Q Consensus       345 -dg----~i~iwd~~~~~~~~~~~--~~~~~~~h~~~---i~~l~~sp~~~~llas~--------~~dg~i~iwd~~~~~  406 (496)
                       ++    .|.+||+.+      +.  .+..+.++...   ...++|+|+|+.|+++.        ..+..|.+||+... 
T Consensus       258 ~~~~~~~~l~~~d~~~------g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-  330 (388)
T 3pe7_A          258 LKGSPDRFIYSADPET------LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG-  330 (388)
T ss_dssp             ETTCCCEEEEEECTTT------CCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT-
T ss_pred             CCCCCcceEEEEecCC------CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC-
Confidence             22    399999987      33  23333321100   11237999999765443        45678999999873 


Q ss_pred             cccCCCCCCCCCCCeeEEEecCCCC-----------CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          407 KKVEQGPRTTNYPAGLFFQHAGHRD-----------KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~h~~-----------~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                                     .+..+..|..           .+..++|+|++..++.+...+       |..+||.+.
T Consensus       331 ---------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-------g~~~l~~~~  381 (388)
T 3pe7_A          331 ---------------TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-------GKPALYLAT  381 (388)
T ss_dssp             ---------------EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-------SSCEEEEEE
T ss_pred             ---------------ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC-------CceeEEEEE
Confidence                           1122333333           578899999998877655433       666676654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.67  E-value=4.8e-15  Score=141.93  Aligned_cols=258  Identities=12%  Similarity=0.070  Sum_probs=168.3

Q ss_pred             EEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecC-----CCCcceeeeecCCCC
Q 010997          145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-----QDNAEFALAMCPTEP  209 (496)
Q Consensus       145 ~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h-----~~~~v~~l~~~p~~~  209 (496)
                      .++|+| ++++|++++          .++.|.+||..+.            +....+...     .+.....++++|+|+
T Consensus        54 ~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~------------~~~~~i~~~~~~~~~g~~p~~i~~spdg~  120 (361)
T 2oiz_A           54 HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDADKL------------TFEKEISLPPKRVQGLNYDGLFRQTTDGK  120 (361)
T ss_dssp             EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEETTTC------------CEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred             ceEECC-CCCEEEEEEecccccccCCCCCEEEEEECcCC------------cEEEEEEcCccccccCCCcceEEECCCCC
Confidence            899999 777777775          2568999999876            333444322     112357899999999


Q ss_pred             ceEEecC--CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee-eecCCCceeEEEE
Q 010997          210 YVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI-YNGHEDTVEDVTF  286 (496)
Q Consensus       210 ~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~  286 (496)
                      +|+++..  +++|.+||+.+.+..                                        .. +. . .....+.+
T Consensus       121 ~l~v~n~~~~~~v~v~d~~~~~~~----------------------------------------~~~i~-~-~~~~~v~~  158 (361)
T 2oiz_A          121 FIVLQNASPATSIGIVDVAKGDYV----------------------------------------EDVTA-A-AGCWSVIP  158 (361)
T ss_dssp             EEEEEEESSSEEEEEEETTTTEEE----------------------------------------EEEGG-G-TTEEEEEE
T ss_pred             EEEEECCCCCCeEEEEECCCCcEE----------------------------------------EEEec-C-CCcceeEE
Confidence            9988764  689999999865321                                        11 11 1 11233567


Q ss_pred             ccCCCceEEEEcCCCeEEEEEccCCCccce-e-----eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARVGTSPVI-K-----VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  360 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-----~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~  360 (496)
                      .|++...+++.+.||.+.+|++..... .. .     .+.....++ .+.++| ++..++..+.++.|.++|+....   
T Consensus       159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~~-~g~~~~~~~~~~~v~v~d~~~~~---  232 (361)
T 2oiz_A          159 QPNRPRSFMTICGDGGLLTINLGEDGK-VASQSRSKQMFSVKDDPI-FIAPAL-DKDKAHFVSYYGNVYSADFSGDE---  232 (361)
T ss_dssp             CTTSSSEEEEEETTSSEEEEEECTTSS-EEEEEECCCCSCTTTSCB-CSCCEE-CSSEEEEEBTTSEEEEEECSSSS---
T ss_pred             cCCCCeeEEEECCCCcEEEEEECCCCc-EeeeccccceEcCCCCce-EEEecc-cCCEEEEEeCCCeEEEEEecCCC---
Confidence            787767888899999999999865321 11 0     111122222 333455 56667777789999999987521   


Q ss_pred             CCCCceEecc------C----CCCEEEEEEcCCCCCEEEEEeC----------CCcEEEEECCCCCcccCCCCCCCCCCC
Q 010997          361 VGSPINKFEG------H----SAAVLCVQWSPDKSSVFGSSAE----------DGLLNIWDYEKVGKKVEQGPRTTNYPA  420 (496)
Q Consensus       361 ~~~~~~~~~~------h----~~~i~~l~~sp~~~~llas~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~  420 (496)
                       ...+..+..      +    ......++|+|++..++++...          .+.|.+||+.+.               
T Consensus       233 -~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------------  296 (361)
T 2oiz_A          233 -VKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------------  296 (361)
T ss_dssp             -CEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------------
T ss_pred             -ceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------------
Confidence             111112110      0    0111237899998888766541          347999999875               


Q ss_pred             eeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCch--HHHHHHHhccceEEEeccCC
Q 010997          421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD--EVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       421 ~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~--~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +.+..+..+.  +.+++|+|++.+++++        +. ++|.+||+.      ++  +.++++..+...-..++++|
T Consensus       297 ~~v~~i~~~~--p~~ia~spdg~~l~v~--------n~-~~v~v~D~~------t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          297 QRVARIPGRD--ALSMTIDQQRNLMLTL--------DG-GNVNVYDIS------QPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             EEEEEEECTT--CCEEEEETTTTEEEEE--------CS-SCEEEEECS------SSSCEEEEEETTSCSSEEEEEECC
T ss_pred             cEEEEEecCC--eeEEEECCCCCEEEEe--------CC-CeEEEEECC------CCcceeeEEeccCCCCcEEEEecC
Confidence            5566666665  8999999999977643        22 899999998      66  77777655555667778776

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=1.2e-15  Score=144.55  Aligned_cols=245  Identities=8%  Similarity=0.064  Sum_probs=163.2

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  220 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i  220 (496)
                      ..|++++|++ +...++..+.++.++.|.   .            .....+..+.. .+.+++|++++++++++..++.|
T Consensus         6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~~~~-~~~~~~~~~~g~l~~~~~~~~~i   68 (333)
T 2dg1_A            6 QDLPTLFYSG-KSNSAVPIISESELQTIT---A------------EPWLEISKKGL-QLEGLNFDRQGQLFLLDVFEGNI   68 (333)
T ss_dssp             CCCCBCCSCG-GGGCSSCCCCGGGSCEEE---C------------EEEEEEESSCC-CEEEEEECTTSCEEEEETTTCEE
T ss_pred             cccceeeecC-CccceeEEeecccCcccc---c------------ceeEEEeccCc-cccCcEECCCCCEEEEECCCCEE
Confidence            4578889999 666677767888999992   2            22345555555 46899999999988888889999


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  300 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  300 (496)
                      .+||..++...                                        .....+...+.+++++|++ .++++...+
T Consensus        69 ~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~i~~~~dg-~l~v~~~~~  107 (333)
T 2dg1_A           69 FKINPETKEIK----------------------------------------RPFVSHKANPAAIKIHKDG-RLFVCYLGD  107 (333)
T ss_dssp             EEECTTTCCEE----------------------------------------EEEECSSSSEEEEEECTTS-CEEEEECTT
T ss_pred             EEEeCCCCcEE----------------------------------------EEeeCCCCCcceEEECCCC-cEEEEeCCC
Confidence            99998754321                                        1122355679999999998 677776666


Q ss_pred             ----CeEEEEEccCCCccceeee--ccCCCCeEEEEecCCCCcEEEEEcC------CCcEEEEeCCCCCCCCCCCCceEe
Q 010997          301 ----SCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       301 ----g~i~iwd~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                          +.|.+||..++.  .....  ..+...++.++++| ++.++++...      .+.|..+|...       ..+..+
T Consensus       108 ~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~-------~~~~~~  177 (333)
T 2dg1_A          108 FKSTGGIFAATENGDN--LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF-------RTVTPI  177 (333)
T ss_dssp             SSSCCEEEEECTTSCS--CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS-------CCEEEE
T ss_pred             CCCCceEEEEeCCCCE--EEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCC-------CEEEEe
Confidence                689999988766  22122  13456799999999 8887777654      34566666543       223333


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s  448 (496)
                      ..+...+..++|+|++..++++.+.++.|.+||+...+.....      ..........++ ..+..+++++++. +.++
T Consensus       178 ~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~------~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~  249 (333)
T 2dg1_A          178 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP------FGATIPYYFTGH-EGPDSCCIDSDDN-LYVA  249 (333)
T ss_dssp             EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE------EEEEEEEECCSS-SEEEEEEEBTTCC-EEEE
T ss_pred             ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc------ccceEEEecCCC-CCCCceEECCCCC-EEEE
Confidence            3334568899999999877767777889999998642211100      000111122233 4577899999876 4444


Q ss_pred             ecCCCCCCCCCCeEEEeecC
Q 010997          449 VSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       449 ~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ...       ++.|.+|+..
T Consensus       250 ~~~-------~~~v~~~d~~  262 (333)
T 2dg1_A          250 MYG-------QGRVLVFNKR  262 (333)
T ss_dssp             EET-------TTEEEEECTT
T ss_pred             EcC-------CCEEEEECCC
Confidence            333       3789999985

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=1.5e-15  Score=147.43  Aligned_cols=265  Identities=12%  Similarity=0.029  Sum_probs=150.9

Q ss_pred             CceeEEEecCCCCcEEEEEeCC---CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          141 GEVNRIRELPQNTKIVATHTDS---PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      ..+..++|+| +++.||.....   ..|.+||+.++.            .. .+..+.......+.|+|+|++|+.++.+
T Consensus        36 ~~~~~~~~Sp-dG~~l~~~~~~~g~~~l~~~d~~~~~------------~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~  101 (396)
T 3c5m_A           36 NYFYQKCFTQ-DGKKLLFAGDFDGNRNYYLLNLETQQ------------AV-QLTEGKGDNTFGGFISTDERAFFYVKNE  101 (396)
T ss_dssp             CCTTSCCBCT-TSCEEEEEECTTSSCEEEEEETTTTE------------EE-ECCCSSCBCTTTCEECTTSSEEEEEETT
T ss_pred             eeeecCcCCC-CCCEEEEEEecCCCceEEEEECCCCc------------EE-EeecCCCCccccceECCCCCEEEEEEcC
Confidence            3478889999 77777665443   368888987762            11 2222222233458899999999999989


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      +.|.+||+.++.............  .....+.+..              ......     .....+.|+|++ ..++.+
T Consensus       102 ~~l~~~d~~~~~~~~~~~~~~~~~--~~g~~l~~~~--------------~~~~~~-----~~~~~~~~spdg-~~~~~~  159 (396)
T 3c5m_A          102 LNLMKVDLETLEEQVIYTVDEEWK--GYGTWVANSD--------------CTKLVG-----IEILKRDWQPLT-SWEKFA  159 (396)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTEE--EEEEEEECTT--------------SSEEEE-----EEEEGGGCCCCC-SHHHHH
T ss_pred             CcEEEEECCCCCcEEEEecccccC--CCCCEEEecc--------------CCcccc-----ccccccccCCCC-cceeee
Confidence            999999997654321111000000  0000000000              000000     000124578887 444433


Q ss_pred             -----cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC------CcEEEEeCCCCCCCCCCCCce
Q 010997          298 -----GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRMFDRRNLTSNGVGSPIN  366 (496)
Q Consensus       298 -----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~~~  366 (496)
                           ..+..|.+||+.+++  ... ...+...+..+.|+|.++..|+..+.+      ..|.+||+..       ....
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~--~~~-~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-------~~~~  229 (396)
T 3c5m_A          160 EFYHTNPTCRLIKVDIETGE--LEV-IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG-------SNVR  229 (396)
T ss_dssp             HHHHTCCCEEEEEEETTTCC--EEE-EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS-------CCCE
T ss_pred             eeccCCCcceEEEEECCCCc--EEe-eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC-------Ccee
Confidence                 456789999998876  222 235677899999999446656555443      3688888865       2233


Q ss_pred             EeccC--CCCEEEEEEcCCCCCEEEEEeCC----CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          367 KFEGH--SAAVLCVQWSPDKSSVFGSSAED----GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       367 ~~~~h--~~~i~~l~~sp~~~~llas~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                      .+..+  ...+..++|+|+|+.|+.++..+    +.|.+||+....             ...+....+    .. +.|+|
T Consensus       230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-------------~~~l~~~~~----~~-~~~s~  291 (396)
T 3c5m_A          230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE-------------NEEVMVMPP----CS-HLMSN  291 (396)
T ss_dssp             ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC-------------EEEEEECCS----EE-EEEEC
T ss_pred             EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC-------------eEEeeeCCC----CC-CCccC
Confidence            33333  23588899999999765443322    349999997631             122222222    22 88999


Q ss_pred             -CCCcEEEEecCCC--------CCCCCCCeEEEeecCC
Q 010997          441 -SDPWTVVSVSDDC--------DSTGGGGTLQIWRMSD  469 (496)
Q Consensus       441 -~~~~l~~s~s~d~--------~sgg~Dg~i~iw~~~~  469 (496)
                       ++..++++.++..        .....++.|++||+..
T Consensus       292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             SSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             CCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence             8885554332100        0112457899999873

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=5.8e-14  Score=147.12  Aligned_cols=250  Identities=7%  Similarity=-0.077  Sum_probs=165.9

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCC-----cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSP-----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      |...+..++|+| ++++||.+..++     .|++||+.++            +.......+.  .+.+++|+|||+.|+.
T Consensus       123 ~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg------------~~~~~~~~~~--~~~~~~wspDg~~l~~  187 (710)
T 2xdw_A          123 GTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGA------------KELPDVLERV--KFSCMAWTHDGKGMFY  187 (710)
T ss_dssp             SCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTT------------EEEEEEEEEE--CSCCEEECTTSSEEEE
T ss_pred             CCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEECCCC------------CCCcccccCc--ccceEEEEeCCCEEEE
Confidence            445688999999 888888665543     8999999887            2222112222  2568999999999998


Q ss_pred             ecCCCc----------------EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--
Q 010997          214 GGKDKS----------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--  275 (496)
Q Consensus       214 g~~Dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  275 (496)
                      ++.++.                |.+|++.++...                                      ....+.  
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~--------------------------------------~~~v~~~~  229 (710)
T 2xdw_A          188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE--------------------------------------DILCAEFP  229 (710)
T ss_dssp             EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG--------------------------------------CEEEECCT
T ss_pred             EEECCccccccccccccCCCCEEEEEECCCCccc--------------------------------------ceEEeccC
Confidence            887766                899998754311                                      001122  


Q ss_pred             cCCCceeEEEEccCCCceEEEEcC-----CCeEEEEEccC------CCccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997          276 GHEDTVEDVTFCPSSAQEFCSVGD-----DSCLILWDARV------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       276 ~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~  344 (496)
                      .|...+..+.|+|++ .+|+.++.     +..|.+||+.+      +.. ....+..+...+.. .|+| ++..|+..+.
T Consensus       230 ~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~-dg~~l~~~s~  305 (710)
T 2xdw_A          230 DEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTN-EGTVFTFKTN  305 (710)
T ss_dssp             TCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEE-ETTEEEEEEC
T ss_pred             CCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEec-cCCEEEEEEC
Confidence            244557889999999 45555443     67899999986      421 13334455555554 4778 6766665544


Q ss_pred             C----CcEEEEeCCCCCCCCCCCCceEeccCCC--CEEEEEEcCCCCCEEEEEeCCCc--EEEEECCCCCcccCCCCCCC
Q 010997          345 D----NSVRMFDRRNLTSNGVGSPINKFEGHSA--AVLCVQWSPDKSSVFGSSAEDGL--LNIWDYEKVGKKVEQGPRTT  416 (496)
Q Consensus       345 d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~--~i~~l~~sp~~~~llas~~~dg~--i~iwd~~~~~~~~~~~~~~~  416 (496)
                      .    +.|.+||+.+..    ......+..|..  .+..++|++++. +++++..|+.  |.+||+..+           
T Consensus       306 ~~~~~~~l~~~d~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~-lv~~~~~~g~~~l~~~~~~~g-----------  369 (710)
T 2xdw_A          306 RHSPNYRLINIDFTDPE----ESKWKVLVPEHEKDVLEWVACVRSNF-LVLCYLHDVKNTLQLHDLATG-----------  369 (710)
T ss_dssp             TTCTTCEEEEEETTSCC----GGGCEEEECCCSSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTTC-----------
T ss_pred             CCCCCCEEEEEeCCCCC----cccceeccCCCCCCeEEEEEEEcCCE-EEEEEEECCEEEEEEEECCCC-----------
Confidence            3    369999988621    012355555544  688899996655 7778888885  555666442           


Q ss_pred             CCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          417 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       417 ~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                          ..+..+..+...|..++++|++..++++.+    +....++|.+||+..
T Consensus       370 ----~~~~~l~~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          370 ----ALLKIFPLEVGSVVGYSGQKKDTEIFYQFT----SFLSPGIIYHCDLTK  414 (710)
T ss_dssp             ----CEEEEECCCSSEEEEEECCTTCSEEEEEEE----CSSCCCEEEEEETTS
T ss_pred             ----CEEEecCCCCceEEEEecCCCCCEEEEEEe----CCCCCCEEEEEECCC
Confidence                223345556677889999998888777766    455678999999873

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.65  E-value=1.4e-15  Score=160.01  Aligned_cols=211  Identities=11%  Similarity=0.169  Sum_probs=133.3

Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  278 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  278 (496)
                      ..++.|+|++.+|+++  ||+|++||+.++...                                        ..+.+|.
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~----------------------------------------~~~~~~~   56 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS----------------------------------------VFLENST   56 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEE----------------------------------------EEECTTT
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceE----------------------------------------EEEechh
Confidence            5689999999988886  999999999876432                                        2222332


Q ss_pred             -----CceeEEEEccCCCceEEEEcCC---------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997          279 -----DTVEDVTFCPSSAQEFCSVGDD---------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       279 -----~~v~~l~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~  344 (496)
                           ....++.|+|++ ..++.++.+         +.+.+||+.+++   ...+..|...+...+||| +++.||.+ .
T Consensus        57 ~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~---~~~l~~~~~~~~~~~~SP-dG~~la~~-~  130 (740)
T 4a5s_A           57 FDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSP-VGHKLAYV-W  130 (740)
T ss_dssp             TTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECS-STTCEEEE-E
T ss_pred             hhhhcccccceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCCc---EEEcccCCCcceeeEECC-CCCEEEEE-E
Confidence                 223468999999 677777776         566799999886   233456778899999999 99999888 4


Q ss_pred             CCcEEEEeCCCCCCCCCCCCce-EeccCCCCE-----------------EEEEEcCCCCCEEEEEeC-CCcEEEEECCCC
Q 010997          345 DNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAV-----------------LCVQWSPDKSSVFGSSAE-DGLLNIWDYEKV  405 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i-----------------~~l~~sp~~~~llas~~~-dg~i~iwd~~~~  405 (496)
                      ++.|++||+..      +.... +..++...+                 ..+.|||||+.| |.++. ++.+.+|++...
T Consensus       131 ~~~i~~~~~~~------~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~l-a~~~~d~~~v~~~~~~~~  203 (740)
T 4a5s_A          131 NNDIYVKIEPN------LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL-AYAQFNDTEVPLIEYSFY  203 (740)
T ss_dssp             TTEEEEESSTT------SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE-EEEEEECTTCCEEEEEEC
T ss_pred             CCeEEEEECCC------CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEE-EEEEEcccCCceEEEEee
Confidence            78999999986      33222 122333323                 358999999975 45543 343555544321


Q ss_pred             Cccc--CC--------CCCC------------CC----CCCeeEEEe-----cCCCCCcceEEecCCCCcEEEEecCCCC
Q 010997          406 GKKV--EQ--------GPRT------------TN----YPAGLFFQH-----AGHRDKVVDFHWNASDPWTVVSVSDDCD  454 (496)
Q Consensus       406 ~~~~--~~--------~~~~------------~~----~~~~~~~~~-----~~h~~~V~~~~~~p~~~~l~~s~s~d~~  454 (496)
                      ....  ..        ....            ..    .........     .+|...+..++|+|++..++....    
T Consensus       204 ~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~----  279 (740)
T 4a5s_A          204 SDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLR----  279 (740)
T ss_dssp             CSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEE----
T ss_pred             cCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeC----
Confidence            1100  00        0000            00    000111111     136677899999999875444333    


Q ss_pred             CCCCCCeEEEeecC
Q 010997          455 STGGGGTLQIWRMS  468 (496)
Q Consensus       455 sgg~Dg~i~iw~~~  468 (496)
                      .++.+..|++||+.
T Consensus       280 r~~~~~~i~~~d~~  293 (740)
T 4a5s_A          280 RIQNYSVMDICDYD  293 (740)
T ss_dssp             SSTTEEEEEEEEEE
T ss_pred             CCCCEEEEEEEECC
Confidence            33445689999998

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.64  E-value=1.6e-13  Score=125.52  Aligned_cols=238  Identities=7%  Similarity=-0.025  Sum_probs=161.3

Q ss_pred             ceeEEEecCCCCcEEE-EEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997          142 EVNRIRELPQNTKIVA-THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  220 (496)
Q Consensus       142 ~V~~l~~~p~~~~~la-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i  220 (496)
                      ...++++.+ ++++++ +.+.++.|.+||..+...            ......+.. .+.+++++++++++++.. ++.|
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~-~p~~i~~~~~g~l~v~~~-~~~i   89 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGT------------TVLPFNGLY-QPQGLAVDGAGTVYVTDF-NNRV   89 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----------------EECCCCSCC-SCCCEEECTTCCEEEEET-TTEE
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCccc------------ceEeeCCcC-CcceeEECCCCCEEEEcC-CCEE
Confidence            578899999 777777 557788999999765411            111111222 467999999998666666 8899


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCCceEEEEcC
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      .+||.......                                         .+. .....+.++++.+++ .++++...
T Consensus        90 ~~~d~~~~~~~-----------------------------------------~~~~~~~~~p~~i~~~~~g-~l~v~~~~  127 (270)
T 1rwi_B           90 VTLAAGSNNQT-----------------------------------------VLPFDGLNYPEGLAVDTQG-AVYVADRG  127 (270)
T ss_dssp             EEECTTCSCCE-----------------------------------------ECCCCSCSSEEEEEECTTC-CEEEEEGG
T ss_pred             EEEeCCCceEe-----------------------------------------eeecCCcCCCcceEECCCC-CEEEEECC
Confidence            99997643211                                         011 122457899999988 67888778


Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEE
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ  379 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~  379 (496)
                      ++.|.+|+..+..  ...........+.+++++| ++.++++...++.|.+||...      .........+...+..++
T Consensus       128 ~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~------~~~~~~~~~~~~~p~~i~  198 (270)
T 1rwi_B          128 NNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES------NNQVVLPFTDITAPWGIA  198 (270)
T ss_dssp             GTEEEEECTTCCS--CEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTT------CCEEECCCSSCCSEEEEE
T ss_pred             CCEEEEEECCCce--eEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCC------CceEeecccCCCCceEEE
Confidence            8999999765443  2222223334678999999 888888887889999999876      222222223336789999


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCC
Q 010997          380 WSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGG  459 (496)
Q Consensus       380 ~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~D  459 (496)
                      ++++|. ++++...++.|.+||.....               .......+...+.++++++++. ++++.+.+       
T Consensus       199 ~d~~g~-l~v~~~~~~~v~~~~~~~~~---------------~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~-------  254 (270)
T 1rwi_B          199 VDEAGT-VYVTEHNTNQVVKLLAGSTT---------------STVLPFTGLNTPLAVAVDSDRT-VYVADRGN-------  254 (270)
T ss_dssp             ECTTCC-EEEEETTTSCEEEECTTCSC---------------CEECCCCSCSCEEEEEECTTCC-EEEEEGGG-------
T ss_pred             ECCCCC-EEEEECCCCcEEEEcCCCCc---------------ceeeccCCCCCceeEEECCCCC-EEEEECCC-------
Confidence            999995 77777778899999986531               1111122335688999999885 66665544       


Q ss_pred             CeEEEeecCC
Q 010997          460 GTLQIWRMSD  469 (496)
Q Consensus       460 g~i~iw~~~~  469 (496)
                      +.|+++++..
T Consensus       255 ~~v~~~~~~~  264 (270)
T 1rwi_B          255 DRVVKLTSLE  264 (270)
T ss_dssp             TEEEEECCCG
T ss_pred             CEEEEEcCCC
Confidence            9999999983

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.64  E-value=5.9e-13  Score=125.93  Aligned_cols=234  Identities=10%  Similarity=0.061  Sum_probs=156.9

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~  215 (496)
                      ...+...+.+++|+| ++++++++..++.|.+||..++            +.......+.. .+.+++++|++++++++.
T Consensus        40 ~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~------------~~~~~~~~~~~-~~~~i~~~~dg~l~v~~~  105 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETK------------EIKRPFVSHKA-NPAAIKIHKDGRLFVCYL  105 (333)
T ss_dssp             EESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTC------------CEEEEEECSSS-SEEEEEECTTSCEEEEEC
T ss_pred             EeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCC------------cEEEEeeCCCC-CcceEEECCCCcEEEEeC
Confidence            345666789999998 7788888889999999998876            22222223434 589999999998887776


Q ss_pred             CC----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccC
Q 010997          216 KD----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPS  289 (496)
Q Consensus       216 ~D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~  289 (496)
                      .+    +.|.+||.++....                                        ..+.  .+...+.+++++|+
T Consensus       106 ~~~~~~~~i~~~d~~~~~~~----------------------------------------~~~~~~~~~~~~~~i~~d~~  145 (333)
T 2dg1_A          106 GDFKSTGGIFAATENGDNLQ----------------------------------------DIIEDLSTAYCIDDMVFDSK  145 (333)
T ss_dssp             TTSSSCCEEEEECTTSCSCE----------------------------------------EEECSSSSCCCEEEEEECTT
T ss_pred             CCCCCCceEEEEeCCCCEEE----------------------------------------EEEccCccCCcccceEECCC
Confidence            66    68999998754321                                        0010  13356889999999


Q ss_pred             CCceEEEEcC------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcE-EEEEcCCCcEEEEeCCCCCCCCCC
Q 010997          290 SAQEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNL-ILTGSADNSVRMFDRRNLTSNGVG  362 (496)
Q Consensus       290 ~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~-l~sgs~dg~i~iwd~~~~~~~~~~  362 (496)
                      + .++++...      .+.|..+|...++  .. .+......++.++|+| ++.. +++.+.++.|.+||+...     +
T Consensus       146 g-~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~-~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~i~~~d~~~~-----g  215 (333)
T 2dg1_A          146 G-GFYFTDFRGYSTNPLGGVYYVSPDFRT--VT-PIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDD-----G  215 (333)
T ss_dssp             S-CEEEEECCCBTTBCCEEEEEECTTSCC--EE-EEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTT-----S
T ss_pred             C-CEEEEeccccccCCCceEEEEeCCCCE--EE-EeecCCCcccceEECC-CCCEEEEEeCCCCeEEEEEecCC-----C
Confidence            8 66666543      3556666655444  22 2223344688999999 7764 455667889999998641     1


Q ss_pred             CCceE--------eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec------C
Q 010997          363 SPINK--------FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA------G  428 (496)
Q Consensus       363 ~~~~~--------~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~  428 (496)
                      ..+..        +.++ ..+..++++++|. ++++...++.|.+||...                ..+..+.      +
T Consensus       216 ~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g----------------~~~~~~~~~~~~~g  277 (333)
T 2dg1_A          216 VTIQPFGATIPYYFTGH-EGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRG----------------YPIGQILIPGRDEG  277 (333)
T ss_dssp             SSEEEEEEEEEEECCSS-SEEEEEEEBTTCC-EEEEEETTTEEEEECTTS----------------CEEEEEECTTGGGT
T ss_pred             cCcccccceEEEecCCC-CCCCceEECCCCC-EEEEEcCCCEEEEECCCC----------------CEEEEEEcCCCccc
Confidence            22211        1222 4678899999997 666776788999999843                1222222      2


Q ss_pred             CCCCcceEEecCCCCcEEEEecC
Q 010997          429 HRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       429 h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      |...+.+++|+|++..++++.+.
T Consensus       278 ~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          278 HMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             CSCBCCEEEECTTSCEEEEEEEC
T ss_pred             cccCcceEEECCCCCEEEEEeCc
Confidence            33368999999988777776654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=4.2e-15  Score=154.60  Aligned_cols=224  Identities=10%  Similarity=0.055  Sum_probs=143.1

Q ss_pred             EEEec--CCCCcE-EEEEeC-CCcEEEEeCC--C-CCCccccCCCCCCCCceEEec-----CCCCcceeeeecCCCCceE
Q 010997          145 RIREL--PQNTKI-VATHTD-SPDVLIWDVE--A-QPNRHAVLGATNSRPDLILTG-----HQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       145 ~l~~~--p~~~~~-lat~~~-dg~i~iwd~~--~-~~~~~~~~~~~~~~~~~~l~~-----h~~~~v~~l~~~p~~~~l~  212 (496)
                      ..+|+  | +++. ||..+. +..|.+|++.  . +.             ...+..     |.. .+.+++|+|||++|+
T Consensus        81 ~~~~~~SP-Dg~~~la~~~~~~~~l~~~~~~~~g~~~-------------~~~l~~~~~~~~~~-~~~~~~~spDg~~l~  145 (662)
T 3azo_A           81 PWAGVPRP-AGGPLLVFTHFGDQRLYAFEPDAPGGAV-------------PRPLTPVSAVGGGL-RWADPVLLPERGEVW  145 (662)
T ss_dssp             CEEEECCS-SSSCEEEEEBTTTCCEEEECTTSTTCCC-------------CEECSCCCCSTTCE-EEEEEEEETTTTEEE
T ss_pred             cceeeeec-CCCeEEEEEECCCCeEEEEcCCCCCCCC-------------CEeccCCccCCCCc-cccCcEECCCCCEEE
Confidence            45555  8 6666 665543 6677777775  2 31             112333     333 578999999999999


Q ss_pred             EecCC----------CcEEEEecCC------ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-
Q 010997          213 SGGKD----------KSVVLWSIQD------HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-  275 (496)
Q Consensus       213 sg~~D----------g~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  275 (496)
                      +++.|          ..|.+||+.+      +..                                         ..+. 
T Consensus       146 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------------------------------------~~l~~  184 (662)
T 3azo_A          146 CMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-----------------------------------------RELSD  184 (662)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-----------------------------------------EESSC
T ss_pred             EEEecccCCCCCCceeEEEEEECCCCccccCCce-----------------------------------------eEEEe
Confidence            88877          5899999875      221                                         2233 


Q ss_pred             cCCCceeEEEEccCCCceEEEEcCC--------CeEEEEEcc-CCCc-cceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997          276 GHEDTVEDVTFCPSSAQEFCSVGDD--------SCLILWDAR-VGTS-PVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  345 (496)
Q Consensus       276 ~h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~iwd~~-~~~~-~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d  345 (496)
                      .+...+..++|+|+| ..|+.++.+        ..|.+||+. ++.. ........+...+..++|+| ++.++++++.+
T Consensus       185 ~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~  262 (662)
T 3azo_A          185 DAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP-DGSLIVATDRT  262 (662)
T ss_dssp             SCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT-TSCEEEEECTT
T ss_pred             cCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC-CCeEEEEECCC
Confidence            445678889999999 667666544        479999998 4521 12333345578899999999 88888888888


Q ss_pred             C--cEEEEeCCCCCCCCCCCCceEeccCCCC--------EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC
Q 010997          346 N--SVRMFDRRNLTSNGVGSPINKFEGHSAA--------VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  415 (496)
Q Consensus       346 g--~i~iwd~~~~~~~~~~~~~~~~~~h~~~--------i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~  415 (496)
                      +  .|.+||+..      +........+...        +..++|+|++. ++++++. +.++||.+...+         
T Consensus       263 ~~~~l~~~~~~~------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~---------  325 (662)
T 3azo_A          263 GWWNLHRVDPAT------GAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPES---------  325 (662)
T ss_dssp             SSCEEEEECTTT------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTT---------
T ss_pred             CCeEEEEEECCC------CceeecccccccccCccccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCC---------
Confidence            8  566666544      3322222222211        56789999988 6678888 999999544211         


Q ss_pred             CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          416 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       416 ~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                           ..+..+..|...+..+ |++++..+++++
T Consensus       326 -----~~~~~l~~~~~~~~~~-~s~~~~~~~~~~  353 (662)
T 3azo_A          326 -----GELVDAAGPWTEWAAT-LTVSGTRAVGVA  353 (662)
T ss_dssp             -----TEEEECCSSCCEEEEE-EEEETTEEEEEE
T ss_pred             -----CcEEEecCCCCeEEEE-EecCCCEEEEEE
Confidence                 1234456666667766 144455555443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.63  E-value=1.1e-13  Score=130.81  Aligned_cols=251  Identities=8%  Similarity=0.007  Sum_probs=160.7

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-c
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-G  276 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  276 (496)
                      .+.+++++|+|+++++...++.+.+++........   ...             ......+.+..++..+...+..+. +
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~---~~~-------------~~~~~~~~i~~~d~~~g~~~~~~~~~   88 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQ---QRG-------------LGPIEEDTILVIDPNNAEILQSSGKN   88 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBS---CGG-------------GCSCCSCCEEEECTTTCCEEEEECTT
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCcceeec---ccc-------------cccccCCcEEEEECCCCeEEeccCCC
Confidence            57899999999988888877543332222110000   000             000011122222222222222222 3


Q ss_pred             CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeee---------ccCCCCeEEEEecCCCCcEEEEEc-CCC
Q 010997          277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE---------KAHDADLHCVDWNPLDDNLILTGS-ADN  346 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~v~~i~~sp~~~~~l~sgs-~dg  346 (496)
                      +.....+++++|++ .++++...++.|++||...... .+..+         ..+......|+++|.++.++++.+ .++
T Consensus        89 ~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A           89 LFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS  166 (329)
T ss_dssp             TCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred             ccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence            44578899999998 6888888999999999865421 12222         234457899999995677888876 699


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccC----------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCC
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGH----------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  416 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h----------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~  416 (496)
                      .|++||..       +..+..+...          -.....|+++|++..|+++...++.|++||..+.           
T Consensus       167 ~I~~~~~~-------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-----------  228 (329)
T 3fvz_A          167 RIVQFSPS-------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-----------  228 (329)
T ss_dssp             EEEEECTT-------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-----------
T ss_pred             eEEEEcCC-------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-----------
Confidence            99999943       4666666422          2348999999995558888888999999999853           


Q ss_pred             CCCCeeEEEe--cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH---HhccceEEE
Q 010997          417 NYPAGLFFQH--AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL---EKFKAHVIS  491 (496)
Q Consensus       417 ~~~~~~~~~~--~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l---~~h~~~v~~  491 (496)
                          .++..+  .++...+..++|+|  ..++++.+...++...++.|++|++.      +++.+..+   .++......
T Consensus       229 ----~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~------~g~~~~~~~~~~~~~~~p~~  296 (329)
T 3fvz_A          229 ----EFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFS------SGEIIDVFKPVRKHFDMPHD  296 (329)
T ss_dssp             ----CEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETT------TCCEEEEECCSSSCCSSEEE
T ss_pred             ----cEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcC------CCeEEEEEcCCCCccCCeeE
Confidence                223333  35666788999999  34555555444466677899999987      45554444   355566788


Q ss_pred             eccCC
Q 010997          492 CTSKP  496 (496)
Q Consensus       492 ~~~sP  496 (496)
                      ++++|
T Consensus       297 ia~~~  301 (329)
T 3fvz_A          297 IVASE  301 (329)
T ss_dssp             EEECT
T ss_pred             EEECC
Confidence            88776

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.63  E-value=5.2e-13  Score=124.08  Aligned_cols=231  Identities=9%  Similarity=0.058  Sum_probs=159.2

Q ss_pred             EecCCCceeEEEecCCCCc-EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          136 TIIHPGEVNRIRELPQNTK-IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~-~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ...+......++|+| +++ +++++..++.|.+||..+.              ...+..+.. .+.+++++|+|+++++.
T Consensus        23 l~~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--------------~~~~~~~~~-~~~~l~~~~dg~l~v~~   86 (296)
T 3e5z_A           23 LADGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--------------LSPEMHPSH-HQNGHCLNKQGHLIACS   86 (296)
T ss_dssp             EECCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--------------EEEEESSCS-SEEEEEECTTCCEEEEE
T ss_pred             EecCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--------------eEEEECCCC-CcceeeECCCCcEEEEe
Confidence            335666788999999 665 8889999999999998764              223444544 57899999999988887


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCCce
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~  293 (496)
                      ..++.|.+||..++.......                                     ... .....+.+++++|+| .+
T Consensus        87 ~~~~~i~~~d~~~g~~~~~~~-------------------------------------~~~~~~~~~~~~i~~d~~G-~l  128 (296)
T 3e5z_A           87 HGLRRLERQREPGGEWESIAD-------------------------------------SFEGKKLNSPNDVCLAPDG-SL  128 (296)
T ss_dssp             TTTTEEEEECSTTCCEEEEEC-------------------------------------EETTEECCCCCCEEECTTS-CE
T ss_pred             cCCCeEEEEcCCCCcEEEEee-------------------------------------ccCCCCCCCCCCEEECCCC-CE
Confidence            778999999986543211000                                     000 012346789999998 67


Q ss_pred             EEE----Ec-------------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997          294 FCS----VG-------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       294 l~s----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                      +++    |+             ..+.|..++.. +.   ......+....+.++|+| ++..+++.+.++.|.+||+...
T Consensus       129 ~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~  203 (296)
T 3e5z_A          129 WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---LSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNAR  203 (296)
T ss_dssp             EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---EEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSS
T ss_pred             EEECCccccccccccccccccCCCcEEEEECCC-CC---EEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCC
Confidence            776    33             13455555544 33   333345667789999999 8888888888899999998731


Q ss_pred             CCCCCCCC---ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc
Q 010997          357 TSNGVGSP---INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  433 (496)
Q Consensus       357 ~~~~~~~~---~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  433 (496)
                           +..   ...+..+...+..++++++|. ++++.  ++.|.+||...                ..+..+..+.. +
T Consensus       204 -----g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~--~~~v~~~~~~g----------------~~~~~~~~~~~-~  258 (296)
T 3e5z_A          204 -----GETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA--GDGVHVLTPDG----------------DELGRVLTPQT-T  258 (296)
T ss_dssp             -----SCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE--TTEEEEECTTS----------------CEEEEEECSSC-C
T ss_pred             -----CcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc--CCeEEEECCCC----------------CEEEEEECCCC-c
Confidence                 232   223333556677899999997 66555  78899999863                34444555666 8


Q ss_pred             ceEEe-cCCCCcEEEEec
Q 010997          434 VDFHW-NASDPWTVVSVS  450 (496)
Q Consensus       434 ~~~~~-~p~~~~l~~s~s  450 (496)
                      ++++| .|++..|+++..
T Consensus       259 ~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          259 SNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             CEEEEESTTSCEEEEEET
T ss_pred             eeEEEECCCCCEEEEEcC
Confidence            99999 577777776543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.60  E-value=3.7e-14  Score=137.44  Aligned_cols=233  Identities=10%  Similarity=0.028  Sum_probs=144.0

Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCccee-------------------eee
Q 010997          144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFA-------------------LAM  204 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~-------------------l~~  204 (496)
                      ..+.|+| +++.||.++.++.|++||+.++.            .......+.. ....                   +.|
T Consensus        84 ~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~------------~~~~~~~~~~-~~~~g~~l~~~~~~~~~~~~~~~~~~  149 (396)
T 3c5m_A           84 FGGFIST-DERAFFYVKNELNLMKVDLETLE------------EQVIYTVDEE-WKGYGTWVANSDCTKLVGIEILKRDW  149 (396)
T ss_dssp             TTCEECT-TSSEEEEEETTTEEEEEETTTCC------------EEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGC
T ss_pred             ccceECC-CCCEEEEEEcCCcEEEEECCCCC------------cEEEEecccc-cCCCCCEEEeccCCcccccccccccc
Confidence            3478999 88899999988899999998762            2222222222 1111                   567


Q ss_pred             cCCCCceEEe-----cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997          205 CPTEPYVLSG-----GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  279 (496)
Q Consensus       205 ~p~~~~l~sg-----~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  279 (496)
                      +|+++.++.+     ..+..|.+||+.++..                                         ..+..+..
T Consensus       150 spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~-----------------------------------------~~~~~~~~  188 (396)
T 3c5m_A          150 QPLTSWEKFAEFYHTNPTCRLIKVDIETGEL-----------------------------------------EVIHQDTA  188 (396)
T ss_dssp             CCCCSHHHHHHHHHTCCCEEEEEEETTTCCE-----------------------------------------EEEEEESS
T ss_pred             CCCCcceeeeeeccCCCcceEEEEECCCCcE-----------------------------------------EeeccCCc
Confidence            8888876654     3566788888765322                                         22334566


Q ss_pred             ceeEEEEcc-CCCceEEEEcCC------CeEEEEEccCCCccceeeeccC-CCCeEEEEecCCCCcEEEEEcCC-----C
Q 010997          280 TVEDVTFCP-SSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSAD-----N  346 (496)
Q Consensus       280 ~v~~l~~~~-~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs~d-----g  346 (496)
                      .+..+.|+| ++ ..|+.++.+      ..|.+||+..+.  ........ ...+..++|+| ++..|+.++.+     +
T Consensus       189 ~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~  264 (396)
T 3c5m_A          189 WLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIP-DGSAMAYVSYFKGQTDR  264 (396)
T ss_dssp             CEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECT-TSSCEEEEEEETTTCCE
T ss_pred             ccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECC-CCCEEEEEecCCCCccc
Confidence            788999999 66 555554433      468888886654  22222211 23578899999 88877666543     4


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC-CCCCEEEEEe----------------CCCcEEEEECCCCCccc
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSA----------------EDGLLNIWDYEKVGKKV  409 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~llas~~----------------~dg~i~iwd~~~~~~~~  409 (496)
                      .|.+||+.+      +... .+.... ... +.|+| ++.. +++++                .+..|.+||+.....  
T Consensus       265 ~l~~~d~~~------g~~~-~l~~~~-~~~-~~~s~~dg~~-l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--  332 (396)
T 3c5m_A          265 VIYKANPET------LENE-EVMVMP-PCS-HLMSNFDGSL-MVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--  332 (396)
T ss_dssp             EEEEECTTT------CCEE-EEEECC-SEE-EEEECSSSSE-EEEEECCC----------CCCCCCEEEEEETTTTBC--
T ss_pred             eEEEEECCC------CCeE-EeeeCC-CCC-CCccCCCCce-EEEecCCcceeeccccccccCCCCcEEEEecccCce--
Confidence            499999987      3322 222112 233 89999 9985 44543                347899999876311  


Q ss_pred             CCCCCCCCCCCeeEEEecCCCC-----------CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          410 EQGPRTTNYPAGLFFQHAGHRD-----------KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~h~~-----------~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                                 ..+   ..+..           .+..++|+|++..++.+...+       +...||.+.
T Consensus       333 -----------~~l---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~-------~~~~l~~~~  381 (396)
T 3c5m_A          333 -----------QKL---CKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE-------GVPAIYIAD  381 (396)
T ss_dssp             -----------CEE---EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-------SSCEEEEEE
T ss_pred             -----------EEc---cCCCCccccccccccCCCCCceEccCCCeEEEEecCC-------CCceEEEEE
Confidence                       122   22222           256789999998776554332       555555543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=8e-14  Score=145.63  Aligned_cols=250  Identities=9%  Similarity=-0.081  Sum_probs=161.9

Q ss_pred             cCCCceeEEEecCCCCcEEE-----EEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          138 IHPGEVNRIRELPQNTKIVA-----THTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~la-----t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      +|...+..++||| ++++||     .|+.+..|++||+.++....         . ..+...   ....++|+|||+.|+
T Consensus       118 ~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---------~-~~~~~~---~~~~~~wspDg~~l~  183 (695)
T 2bkl_A          118 DGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---------V-DVIEGG---KYATPKWTPDSKGFY  183 (695)
T ss_dssp             SSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEETTTCCBCS---------S-CCBSCC---TTCCCEECTTSSEEE
T ss_pred             CCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEECCCCCCcC---------C-cccCcc---cccceEEecCCCEEE
Confidence            4566799999999 888888     44455789999999883110         0 011111   126889999999999


Q ss_pred             EecCCCc-------------EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997          213 SGGKDKS-------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  279 (496)
Q Consensus       213 sg~~Dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  279 (496)
                      .++.|..             |.+|++.++....                                    ..+.....|..
T Consensus       184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------------------------------~lv~~~~~~~~  227 (695)
T 2bkl_A          184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------------------------------------TVVHERTGDPT  227 (695)
T ss_dssp             EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------------------------------------EEEECCCCCTT
T ss_pred             EEEecCCCCCccccCCCCCEEEEEECCCCchhc------------------------------------eEEEecCCCCE
Confidence            9888776             9999987643210                                    00111223556


Q ss_pred             ceeEEEEccCCCceEEEEcCCC----eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc---CCCcEEEEe
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS---ADNSVRMFD  352 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs---~dg~i~iwd  352 (496)
                      .+..+.|+|+| .+|+.++.++    .|.+||...+.   ...+..+...+....++  ++.+++.+.   .++.|.+||
T Consensus       228 ~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~~--~g~l~~~s~~~~~~~~l~~~d  301 (695)
T 2bkl_A          228 TFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD---FRLLVKGVGAKYEVHAW--KDRFYVLTDEGAPRQRVFEVD  301 (695)
T ss_dssp             CEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS---CEEEEECSSCCEEEEEE--TTEEEEEECTTCTTCEEEEEB
T ss_pred             EEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc---eEEeecCCCceEEEEec--CCcEEEEECCCCCCCEEEEEe
Confidence            78899999999 4555555444    56666554433   23334555566666674  444555544   257899999


Q ss_pred             CCCCCCCCCCCC--ceEeccC--CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC
Q 010997          353 RRNLTSNGVGSP--INKFEGH--SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  428 (496)
Q Consensus       353 ~~~~~~~~~~~~--~~~~~~h--~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (496)
                      +.+      +..  ...+..+  ...+..++|+ ++ .++++...|+..+||.+...+.              ....+..
T Consensus       302 ~~~------~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~--------------~~~~l~~  359 (695)
T 2bkl_A          302 PAK------PARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGK--------------PVRTVQL  359 (695)
T ss_dssp             TTB------CSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC--------------EEEECCC
T ss_pred             CCC------CCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCC--------------eeEEecC
Confidence            876      332  2344333  4568888998 44 4788999999988887653211              2222333


Q ss_pred             C-CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          429 H-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       429 h-~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      + ...|..++++|++..++++.+    +....++|++||+..
T Consensus       360 ~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          360 PGVGAASNLMGLEDLDDAYYVFT----SFTTPRQIYKTSVST  397 (695)
T ss_dssp             SSSSEECCCBSCTTCSEEEEEEE----ETTEEEEEEEEETTT
T ss_pred             CCCeEEEEeecCCCCCEEEEEEc----CCCCCCEEEEEECCC
Confidence            3 556888999998888877765    445568999999873

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.59  E-value=5.7e-14  Score=133.74  Aligned_cols=240  Identities=11%  Similarity=0.160  Sum_probs=148.3

Q ss_pred             ceeEEEecCCCCcEEEEE---------eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          142 EVNRIRELPQNTKIVATH---------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .+...++   +++.+|..         ..++.|.+||+.++            +. ..+    . .+..++|+|+|++|+
T Consensus        16 ~~~~~~~---dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~------------~~-~~l----~-~~~~~~~SpDg~~la   74 (347)
T 2gop_A           16 YLSDPRT---KGELVAYVLTKANLKDNKYENTIVIENLKNN------------AR-RFI----E-NATMPRISPDGKKIA   74 (347)
T ss_dssp             EEEEEEE---ETTEEEEEEEEEETTTTEEEEEEEEEETTTC------------CE-EEE----E-SCEEEEECTTSSEEE
T ss_pred             EcccceE---CCcEEEEEEeecCcccCCccceEEEEeCCCC------------ce-EEc----c-cCCCeEECCCCCEEE
Confidence            4556666   45555443         12568999999876            21 122    2 468899999999988


Q ss_pred             EecCC---Cc--EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997          213 SGGKD---KS--VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  287 (496)
Q Consensus       213 sg~~D---g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  287 (496)
                      .++.+   +.  |.+||+.++..                                         ..+..+.. +..++|+
T Consensus        75 ~~~~~~~~~~~~l~~~~~~~g~~-----------------------------------------~~l~~~~~-~~~~~ws  112 (347)
T 2gop_A           75 FMRANEEKKVSEIWVADLETLSS-----------------------------------------KKILEAKN-IRSLEWN  112 (347)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEE-----------------------------------------EEEEEESE-EEEEEEC
T ss_pred             EEEeccCCCcceEEEEECCCCce-----------------------------------------EEEEcCCC-ccceeEC
Confidence            87654   33  66777764321                                         22222233 8999999


Q ss_pred             cCCCceEEEEcC---------------------------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE
Q 010997          288 PSSAQEFCSVGD---------------------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  340 (496)
Q Consensus       288 ~~~~~~l~s~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~  340 (496)
                      |++ ..|+.++.                           ...|.+||+.+++  ....+.. . .+..++|+| ++ +++
T Consensus       113 pdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~-~~~~~~~sp-dg-~~~  185 (347)
T 2gop_A          113 EDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P-RFSSGIWHR-DK-IVV  185 (347)
T ss_dssp             TTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE--EEEEEEE-E-TTCEEEEET-TE-EEE
T ss_pred             CCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe--EEeeecC-C-CcccccCCC-Ce-EEE
Confidence            999 55655543                           2578999998776  2122323 3 788999999 78 777


Q ss_pred             EEcCCC-------cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-------CcEEEEECCCCC
Q 010997          341 TGSADN-------SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-------GLLNIWDYEKVG  406 (496)
Q Consensus       341 sgs~dg-------~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-------g~i~iwd~~~~~  406 (496)
                      +++.++       ...||.+..      +. ...+..+ ..+..+  +|+|+.|+..+..+       ..|.+||  .. 
T Consensus       186 ~~~~~~~~~~~~~~~~l~~~d~------~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-  252 (347)
T 2gop_A          186 NVPHREIIPQYFKFWDIYIWED------GK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK-  252 (347)
T ss_dssp             EEECCCSSCCSSCCEEEEEEET------TE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS-
T ss_pred             EEecccccccccccccEEEeCC------Cc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC-
Confidence            776542       345554443      33 3334434 555554  99999765444332       3677787  31 


Q ss_pred             cccCCCCCCCCCCCeeEEEecCCCCCcce-EEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhc
Q 010997          407 KKVEQGPRTTNYPAGLFFQHAGHRDKVVD-FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  485 (496)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h  485 (496)
                      +              ......+|...+.. +.|+ ++  ++++++.+       +.++|| +.+      ++. ..+..+
T Consensus       253 ~--------------~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~-------~~~~l~-~~~------g~~-~~~~~~  300 (347)
T 2gop_A          253 E--------------VMGILDEVDRGVGQAKIKD-GK--VYFTLFEE-------GSVNLY-IWD------GEI-KPIAKG  300 (347)
T ss_dssp             C--------------EEESSTTCCSEEEEEEEET-TE--EEEEEEET-------TEEEEE-EES------SSE-EEEECS
T ss_pred             c--------------eEeccccCCcccCCccEEc-Cc--EEEEEecC-------CcEEEE-EcC------Cce-EEEecC
Confidence            1              12223455667776 8999 66  66666655       899999 862      222 223345


Q ss_pred             cceEEEeccCC
Q 010997          486 KAHVISCTSKP  496 (496)
Q Consensus       486 ~~~v~~~~~sP  496 (496)
                      .+.|.+++|+|
T Consensus       301 ~~~v~~~~~s~  311 (347)
T 2gop_A          301 RHWIMGFDVDE  311 (347)
T ss_dssp             SSEEEEEEESS
T ss_pred             CCeEEeeeeeC
Confidence            67888888886

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.57  E-value=1.2e-12  Score=120.83  Aligned_cols=198  Identities=14%  Similarity=0.170  Sum_probs=141.8

Q ss_pred             CCCceeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      |...+..+++.+.++.++++... ++.|++||.. +            +....+.......+.+++++|+++++++...+
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g------------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~  141 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-G------------QFVRKFGATILQHPRGVTVDNKGRIIVVECKV  141 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-S------------CEEEEECTTTCSCEEEEEECTTSCEEEEETTT
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-C------------cEEEEecCccCCCceEEEEeCCCCEEEEECCC
Confidence            44578899995437777777643 7899999943 3            22223322222246899999999988888888


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccCCCceEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~  295 (496)
                      +.|.+||......                                         ..+.  .+...+.++++++++ .+++
T Consensus       142 ~~i~~~~~~g~~~-----------------------------------------~~~~~~~~~~~p~~i~~~~~g-~l~v  179 (286)
T 1q7f_A          142 MRVIIFDQNGNVL-----------------------------------------HKFGCSKHLEFPNGVVVNDKQ-EIFI  179 (286)
T ss_dssp             TEEEEECTTSCEE-----------------------------------------EEEECTTTCSSEEEEEECSSS-EEEE
T ss_pred             CEEEEEcCCCCEE-----------------------------------------EEeCCCCccCCcEEEEECCCC-CEEE
Confidence            9999999653211                                         1121  234568899999998 6888


Q ss_pred             EEcCCCeEEEEEccCCCccceeeecc--CCCCeEEEEecCCCCcEEEEEcCCC-cEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSADN-SVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~i~~sp~~~~~l~sgs~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      +...++.|++||... .  ....+..  +...+..|+++| +++++++...++ .|.+||..       +..+..+..+.
T Consensus       180 ~~~~~~~i~~~~~~g-~--~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-------g~~~~~~~~~~  248 (286)
T 1q7f_A          180 SDNRAHCVKVFNYEG-Q--YLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-------GQLISALESKV  248 (286)
T ss_dssp             EEGGGTEEEEEETTC-C--EEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-------SCEEEEEEESS
T ss_pred             EECCCCEEEEEcCCC-C--EEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-------CCEEEEEcccC
Confidence            888899999999743 3  2333322  236789999999 888888888776 99999954       46666665543


Q ss_pred             C--CEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          373 A--AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       373 ~--~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      .  .+.+++++|++. ++++ +.|+.|++|++..
T Consensus       249 ~~~~~~~i~~~~~g~-l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          249 KHAQCFDVALMDDGS-VVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             CCSCEEEEEEETTTE-EEEE-ETTTEEEEEECSC
T ss_pred             CCCcceeEEECCCCc-EEEE-CCCCeEEEEEccc
Confidence            3  478999999997 6666 5699999999865

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.56  E-value=2.8e-13  Score=128.89  Aligned_cols=224  Identities=13%  Similarity=0.124  Sum_probs=141.1

Q ss_pred             CceeEEEecCCCCcEEEEEeCC---C--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997          141 GEVNRIRELPQNTKIVATHTDS---P--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~  215 (496)
                      ..+..++|+| +++.||..+.+   +  .|.+||+.++            +....... ..  +..++|+|+|+.|+.++
T Consensus        59 ~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~l~~~~~~~g------------~~~~l~~~-~~--~~~~~wspdg~~l~~~~  122 (347)
T 2gop_A           59 ENATMPRISP-DGKKIAFMRANEEKKVSEIWVADLETL------------SSKKILEA-KN--IRSLEWNEDSRKLLIVG  122 (347)
T ss_dssp             ESCEEEEECT-TSSEEEEEEEETTTTEEEEEEEETTTT------------EEEEEEEE-SE--EEEEEECTTSSEEEEEE
T ss_pred             ccCCCeEECC-CCCEEEEEEeccCCCcceEEEEECCCC------------ceEEEEcC-CC--ccceeECCCCCEEEEEE
Confidence            5688999999 88888776653   3  4788888765            22222222 22  78999999999888876


Q ss_pred             CC---------------------------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCc
Q 010997          216 KD---------------------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSV  268 (496)
Q Consensus       216 ~D---------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (496)
                      .+                           ..|.+||+.++..                                      
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--------------------------------------  164 (347)
T 2gop_A          123 FKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--------------------------------------  164 (347)
T ss_dssp             ECCCC---------CCCC---------CEEEEEEEETTTTEE--------------------------------------
T ss_pred             ccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--------------------------------------
Confidence            43                           4566677654321                                      


Q ss_pred             CCeeeeecCCCceeEEEEccCCCceEEEEcCCC-------eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEE
Q 010997          269 GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS-------CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILT  341 (496)
Q Consensus       269 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s  341 (496)
                        +..+.. . .+..+.|+|++  +++++..++       ...||.+.+++   ...+..+ ..+..+  +| ++..|+.
T Consensus       165 --~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~---~~~l~~~-~~~~~~--sp-dg~~l~~  231 (347)
T 2gop_A          165 --IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGK---EEKMFEK-VSFYAV--DS-DGERILL  231 (347)
T ss_dssp             --EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTE---EEEEEEE-ESEEEE--EE-CSSCEEE
T ss_pred             --EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCc---eEEeccC-cceeeE--CC-CCCEEEE
Confidence              122333 2 67889999998  566665432       44555554333   2223334 455544  88 8888877


Q ss_pred             EcCC--------CcEEEEeCCCCCCCCCCCCceEeccCCCCEEE-EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCC
Q 010997          342 GSAD--------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLC-VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQG  412 (496)
Q Consensus       342 gs~d--------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~-l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~  412 (496)
                      ++.+        ..|.+||  .      +........+...+.. +.|+ ++  ++++++.++.++|| +.. ++     
T Consensus       232 ~~~~~~~~~~~~~~l~~~d--~------~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~-g~-----  293 (347)
T 2gop_A          232 YGKPEKKYMSEHNKLYIYD--G------KEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWD-GE-----  293 (347)
T ss_dssp             EECCSSSCCCSSCEEEEEC--S------SCEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EES-SS-----
T ss_pred             EEccccCCccccceEEEEC--C------CceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcC-Cc-----
Confidence            6644        3688888  3      3444444556777886 9999 77  67788889999999 873 21     


Q ss_pred             CCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          413 PRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       413 ~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                               . ..+..+...|.+++|+|   .++++++.+      +....||.+.
T Consensus       294 ---------~-~~~~~~~~~v~~~~~s~---~~~~~~~~~------~~~~~l~~~~  330 (347)
T 2gop_A          294 ---------I-KPIAKGRHWIMGFDVDE---IVVYLKETA------TRLRELFTWD  330 (347)
T ss_dssp             ---------E-EEEECSSSEEEEEEESS---SEEEEEECS------SSCCEEEEES
T ss_pred             ---------e-EEEecCCCeEEeeeeeC---cEEEEEcCC------CChHHheEeC
Confidence                     1 12233467899999998   355555443      1223666654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.52  E-value=1.9e-11  Score=113.35  Aligned_cols=242  Identities=7%  Similarity=-0.020  Sum_probs=164.8

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD  217 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D  217 (496)
                      .+...+.++++.+ +++++++...++.|.+||.. +...           ...+..+.. .+.++++.+++.++++...+
T Consensus        12 ~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~-----------~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~   77 (299)
T 2z2n_A           12 NQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKIT-----------EYPLPTPDA-KVMCLTISSDGEVWFTENAA   77 (299)
T ss_dssp             SSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEE-----------EEECSSTTC-CEEEEEECTTSCEEEEETTT
T ss_pred             CcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeE-----------EecCCcccC-ceeeEEECCCCCEEEeCCCC
Confidence            4456799999999 77788777668899999987 4110           011112223 57899999999888887778


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      +.|..||.......                                        ..+......+.++++.+++ .++++.
T Consensus        78 ~~i~~~~~~g~~~~----------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~~  116 (299)
T 2z2n_A           78 NKIGRITKKGIIKE----------------------------------------YTLPNPDSAPYGITEGPNG-DIWFTE  116 (299)
T ss_dssp             TEEEEECTTSCEEE----------------------------------------EECSSTTCCEEEEEECTTS-CEEEEE
T ss_pred             CeEEEECCCCcEEE----------------------------------------EeCCCcCCCceeeEECCCC-CEEEEe
Confidence            89999987521100                                        0011133467899999988 677777


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE-eccCCCCEE
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK-FEGHSAAVL  376 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~i~  376 (496)
                      ..++.|.+||. ++.. ...........+..+++++ ++.++++...++.|..||. +      +..... +......+.
T Consensus       117 ~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~~  186 (299)
T 2z2n_A          117 MNGNRIGRITD-DGKI-REYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-S------GDITEFKIPTPASGPV  186 (299)
T ss_dssp             TTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCEE
T ss_pred             cCCceEEEECC-CCCE-EEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-C------CcEEEeeCCCCCCcce
Confidence            77899999998 5441 1112223456789999999 7888888877889999998 4      333221 333456788


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997          377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  456 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg  456 (496)
                      .+++++++. ++++...++.|.+||. .. .             ...+....+...+.++++++++. +.++...     
T Consensus       187 ~i~~~~~g~-l~v~~~~~~~i~~~~~-~g-~-------------~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~-----  244 (299)
T 2z2n_A          187 GITKGNDDA-LWFVEIIGNKIGRITT-SG-E-------------ITEFKIPTPNARPHAITAGAGID-LWFTEWG-----  244 (299)
T ss_dssp             EEEECTTSS-EEEEETTTTEEEEECT-TC-C-------------EEEEECSSTTCCEEEEEECSTTC-EEEEETT-----
T ss_pred             eEEECCCCC-EEEEccCCceEEEECC-CC-c-------------EEEEECCCCCCCceeEEECCCCC-EEEeccC-----
Confidence            999999987 6766666889999998 42 1             11122334456788999999876 5554332     


Q ss_pred             CCCCeEEEeecC
Q 010997          457 GGGGTLQIWRMS  468 (496)
Q Consensus       457 g~Dg~i~iw~~~  468 (496)
                        ++.|.+|+..
T Consensus       245 --~~~i~~~d~~  254 (299)
T 2z2n_A          245 --ANKIGRLTSN  254 (299)
T ss_dssp             --TTEEEEEETT
T ss_pred             --CceEEEECCC
Confidence              3789999874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=5e-13  Score=139.60  Aligned_cols=226  Identities=8%  Similarity=-0.040  Sum_probs=144.1

Q ss_pred             cCCCCcceeeeecCCCCceE-----EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997          193 GHQDNAEFALAMCPTEPYVL-----SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  267 (496)
Q Consensus       193 ~h~~~~v~~l~~~p~~~~l~-----sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (496)
                      +|.. .+.+++|+|||++|+     +|+.+..|++||+.++....   .                               
T Consensus       118 ~~~~-~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~-------------------------------  162 (695)
T 2bkl_A          118 DGTV-SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---V-------------------------------  162 (695)
T ss_dssp             SSCE-EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---S-------------------------------
T ss_pred             CCCE-EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---C-------------------------------
Confidence            4443 578999999999988     45556789999998754310   0                               


Q ss_pred             cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe-------------EEEEEccCCCcc--ceeeeccCCCCeEEEEec
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC-------------LILWDARVGTSP--VIKVEKAHDADLHCVDWN  332 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-------------i~iwd~~~~~~~--~~~~~~~~~~~v~~i~~s  332 (496)
                          ..+...  ....++|+|++ ..|+.++.|..             |++|++.++...  .+.....+...+..+.|+
T Consensus       163 ----~~~~~~--~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S  235 (695)
T 2bkl_A          163 ----DVIEGG--KYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS  235 (695)
T ss_dssp             ----CCBSCC--TTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred             ----cccCcc--cccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence                001111  12578999999 67777777665             999999877632  222333455678999999


Q ss_pred             CCCCcEEEEEcCCC----cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe---CCCcEEEEECCCC
Q 010997          333 PLDDNLILTGSADN----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA---EDGLLNIWDYEKV  405 (496)
Q Consensus       333 p~~~~~l~sgs~dg----~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~---~dg~i~iwd~~~~  405 (496)
                      | ++.+|+.++.++    .|.+||...       .....+..+...+....| +++. +++++.   .++.|.+||+...
T Consensus       236 p-DG~~l~~~~~~~~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~  305 (695)
T 2bkl_A          236 R-DGKYLFVYILRGWSENDVYWKRPGE-------KDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKP  305 (695)
T ss_dssp             T-TSCCEEEEEEETTTEEEEEEECTTC-------SSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBC
T ss_pred             C-CCCEEEEEEeCCCCceEEEEEcCCC-------CceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCC
Confidence            9 888888777665    667776543       245556666666667767 6777 666655   2588999998764


Q ss_pred             CcccCCCCCCCCCCCeeEEEecCC-CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHh
Q 010997          406 GKKVEQGPRTTNYPAGLFFQHAGH-RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK  484 (496)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~  484 (496)
                      ...            ........+ ...|.+++|+  +..++++...|       +..+||.+.-     .+..+..+..
T Consensus       306 ~~~------------~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~d-------g~~~l~~~~~-----~g~~~~~l~~  359 (695)
T 2bkl_A          306 ARA------------SWKEIVPEDSSASLLSVSIV--GGHLSLEYLKD-------ATSEVRVATL-----KGKPVRTVQL  359 (695)
T ss_dssp             SGG------------GCEEEECCCSSCEEEEEEEE--TTEEEEEEEET-------TEEEEEEEET-----TCCEEEECCC
T ss_pred             Ccc------------CCeEEecCCCCCeEEEEEEE--CCEEEEEEEEC-------CEEEEEEEeC-----CCCeeEEecC
Confidence            210            011112222 4457888888  45677777665       8888886651     1222233443


Q ss_pred             c-cceEEEeccCC
Q 010997          485 F-KAHVISCTSKP  496 (496)
Q Consensus       485 h-~~~v~~~~~sP  496 (496)
                      + .+.|..++++|
T Consensus       360 ~~~~~v~~~~~s~  372 (695)
T 2bkl_A          360 PGVGAASNLMGLE  372 (695)
T ss_dssp             SSSSEECCCBSCT
T ss_pred             CCCeEEEEeecCC
Confidence            3 55667777665

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.51  E-value=1e-11  Score=116.25  Aligned_cols=249  Identities=6%  Similarity=0.027  Sum_probs=158.3

Q ss_pred             CCCceeEEEecCCCCcEEEE-------EeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCc
Q 010997          139 HPGEVNRIRELPQNTKIVAT-------HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPY  210 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat-------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~  210 (496)
                      .-....+++|.+ ++.++++       +..++.|.+||..++......        .....++.. .+.+++++++ +++
T Consensus        16 ~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~--------~~~~~~~~~-~~~~i~~~~~~g~l   85 (314)
T 1pjx_A           16 DIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC--------KPEVNGYGG-IPAGCQCDRDANQL   85 (314)
T ss_dssp             CCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEE--------CCEETTEEC-CEEEEEECSSSSEE
T ss_pred             cCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE--------ecccCCCCC-CCceEEEecCCCcE
Confidence            344568899997 7778877       677889999998766211000        000012333 4789999999 765


Q ss_pred             eEEecCCCcEEEEecCCcccccc-CCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSA-TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      +++.. .+.|.+||.+ +..... ...                                    ........+.++++.++
T Consensus        86 ~v~~~-~~~l~~~d~~-g~~~~~~~~~------------------------------------~~~~~~~~~~~i~~d~~  127 (314)
T 1pjx_A           86 FVADM-RLGLLVVQTD-GTFEEIAKKD------------------------------------SEGRRMQGCNDCAFDYE  127 (314)
T ss_dssp             EEEET-TTEEEEEETT-SCEEECCSBC------------------------------------TTSCBCBCCCEEEECTT
T ss_pred             EEEEC-CCCEEEEeCC-CCEEEEEecc------------------------------------CCCccccCCcCEEECCC
Confidence            55554 4478889986 432110 000                                    00011235789999999


Q ss_pred             CCceEEEEcCC---------------CeEEEEEccCCCccceeeeccCCCCeEEEEec----CCCCcE-EEEEcCCCcEE
Q 010997          290 SAQEFCSVGDD---------------SCLILWDARVGTSPVIKVEKAHDADLHCVDWN----PLDDNL-ILTGSADNSVR  349 (496)
Q Consensus       290 ~~~~l~s~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~~-l~sgs~dg~i~  349 (496)
                      + .++++...+               +.|..||.. ++  .. ....+....+.++|+    | ++.. +++...++.|.
T Consensus       128 g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~-~~~~~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~  201 (314)
T 1pjx_A          128 G-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MI-QVDTAFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLW  201 (314)
T ss_dssp             S-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EE-EEEEEESSEEEEEEEECTTS-CEEEEEEEETTTTEEE
T ss_pred             C-CEEEEecCcccccccccccccCCCCeEEEECCC-CC--EE-EeccCCCCcceEEEecccCC-CCCEEEEEECCCCeEE
Confidence            8 666666554               567777765 33  22 222334557889999    9 7754 45556788999


Q ss_pred             EEeCCCCCCCCCCC-----CceEeccCC-CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997          350 MFDRRNLTSNGVGS-----PINKFEGHS-AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  423 (496)
Q Consensus       350 iwd~~~~~~~~~~~-----~~~~~~~h~-~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  423 (496)
                      +||+...     +.     ....+..+. ..+..++++++|. ++++...++.|.+||..+.               ..+
T Consensus       202 ~~~~~~~-----g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g---------------~~~  260 (314)
T 1pjx_A          202 SYDIKGP-----AKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGG---------------QPK  260 (314)
T ss_dssp             EEEEEET-----TEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCB---------------SCS
T ss_pred             EEECCCC-----CccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCC---------------cEe
Confidence            9997620     22     223344444 6688999999997 6767667889999998742               111


Q ss_pred             EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .....+...+.+++|+|++..++++...+       +.|..|++..
T Consensus       261 ~~~~~~~~~~~~i~~~~dg~~l~v~~~~~-------~~l~~~~~~~  299 (314)
T 1pjx_A          261 MRIRCPFEKPSNLHFKPQTKTIFVTEHEN-------NAVWKFEWQR  299 (314)
T ss_dssp             EEEECSSSCEEEEEECTTSSEEEEEETTT-------TEEEEEECSS
T ss_pred             EEEeCCCCCceeEEECCCCCEEEEEeCCC-------CeEEEEeCCC
Confidence            22334456789999999888677755443       7999999873

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.51  E-value=3.3e-11  Score=121.34  Aligned_cols=271  Identities=10%  Similarity=0.061  Sum_probs=175.7

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCC--CCCCccccCCCCCCCCceEEecCCCCcceeeeec----C
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVE--AQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC----P  206 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~----p  206 (496)
                      .+..+.....+..++|+| +++++++++.|+.|.+||+.  +.            +.+..+.....  ...++|+    |
T Consensus       189 v~~~i~~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~------------~~v~~i~~G~~--P~~ia~s~~~~p  253 (567)
T 1qks_A          189 IKTVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEP------------TTVAEIKIGSE--ARSIETSKMEGW  253 (567)
T ss_dssp             EEEEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC------------CEEEEEECCSE--EEEEEECCSTTC
T ss_pred             EEEEEeCCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCC------------cEeEEEecCCC--CceeEEccccCC
Confidence            444555556788999999 88888889999999999995  44            33445544333  4789999    6


Q ss_pred             CCCceEEec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC-CceeEE
Q 010997          207 TEPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDV  284 (496)
Q Consensus       207 ~~~~l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l  284 (496)
                      +|++++++. .+++|.++|..+.+..........                              .......|. ..+..+
T Consensus       254 DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~------------------------------~~~~~~~~p~~rva~i  303 (567)
T 1qks_A          254 EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM------------------------------TYDEQEYHPEPRVAAI  303 (567)
T ss_dssp             TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE------------------------------CTTTCCEESCCCEEEE
T ss_pred             CCCEEEEEEccCCeEEEEECCCCcEEEEEecccc------------------------------ccccccccCCCceEEE
Confidence            999877665 469999999876433211100000                              000000121 257788


Q ss_pred             EEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE-cCCCcEEEEeCCCCCCCCCCC
Q 010997          285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~  363 (496)
                      ..+++++.++++...+|.|.++|........+... ........+.|+| ++.+|+++ ..++.|.++|+.+      ++
T Consensus       304 ~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t------~k  375 (567)
T 1qks_A          304 LASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE------GK  375 (567)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT------TE
T ss_pred             EEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC-CCCEEEEEeCCCCeEEEEECCC------Cc
Confidence            88988877788888899999999987653222222 3455677899999 78776554 4678999999998      55


Q ss_pred             CceEecc-----CCCCEEEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE
Q 010997          364 PINKFEG-----HSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  437 (496)
Q Consensus       364 ~~~~~~~-----h~~~i~~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  437 (496)
                      .+..+..     |.+.-..+ ++|++..+++++. .++.|.++|....+...        .....+..+......-..+.
T Consensus       376 l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~--------~~~kvv~~i~~~g~g~~~i~  446 (567)
T 1qks_A          376 LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPD--------NAWKILDSFPALGGGSLFIK  446 (567)
T ss_dssp             EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--------TBTSEEEEEECSCSCCCCEE
T ss_pred             EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc--------ccCEEEEEEecCCCCCEEEE
Confidence            5554432     33222122 6888665776664 46899999987621110        11234455544433335678


Q ss_pred             ecCCCCcEEEEecCCCCCCCC----CCeEEEeecCCC
Q 010997          438 WNASDPWTVVSVSDDCDSTGG----GGTLQIWRMSDL  470 (496)
Q Consensus       438 ~~p~~~~l~~s~s~d~~sgg~----Dg~i~iw~~~~~  470 (496)
                      .+|+++++.++..     .+.    .++|.|+|+.+.
T Consensus       447 ~~p~~~~l~v~~~-----~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          447 THPNSQYLYVDAT-----LNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CCTTCSEEEEECT-----TCSSHHHHTCEEEEEGGGC
T ss_pred             eCCCCCeEEEecC-----CCCCcccCceEEEEECCcc
Confidence            9999999888652     111    269999999854

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.50  E-value=9.1e-12  Score=125.43  Aligned_cols=237  Identities=10%  Similarity=0.062  Sum_probs=159.3

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecC--Ccc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQ--DHI  229 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~--~~~  229 (496)
                      .+.++++...++.|.++|..+.            +.+..+....  .+..+.|+|+|++|++++.|+.|.+||+.  +..
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~------------~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~  231 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTY------------EIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT  231 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTC------------CEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC
T ss_pred             CceEEEEeCCCCeEEEEECCCC------------eEEEEEeCCC--CccceEECCCCCEEEEEcCCCeEEEEECCCCCCc
Confidence            4567778888999999999887            4455555433  35789999999999999999999999985  321


Q ss_pred             ccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc----cCCCceEEEEcCCCeEEE
Q 010997          230 TSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC----PSSAQEFCSVGDDSCLIL  305 (496)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~~~~l~s~~~dg~i~i  305 (496)
                      .                                        +..+.. ......++|+    |+|..++++...++.|.+
T Consensus       232 ~----------------------------------------v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~V  270 (567)
T 1qks_A          232 T----------------------------------------VAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVI  270 (567)
T ss_dssp             E----------------------------------------EEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEE
T ss_pred             E----------------------------------------eEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEE
Confidence            1                                        122322 2245789999    698656666667799999


Q ss_pred             EEccCCCccceeeecc----------C-CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          306 WDARVGTSPVIKVEKA----------H-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       306 wd~~~~~~~~~~~~~~----------~-~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      +|..+.+  .+.....          | ...+..+..++....+++....+|.|.++|.....    ...+..+. ....
T Consensus       271 iD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~----~~~v~~i~-~~~~  343 (567)
T 1qks_A          271 MDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN----NLKTTEIS-AERF  343 (567)
T ss_dssp             EETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS----EEEEEEEE-CCSS
T ss_pred             EECCCCc--EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc----cceeeeee-cccc
Confidence            9988876  3333221          1 22678888888445667777788999999988632    11222332 3445


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE--ecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ--HAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      ...+.|+|+++++++++..++.|.++|+.+. +..           ..+..  ...|.+.-..+ ++|++..+.++..  
T Consensus       344 ~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~-----------~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~--  408 (567)
T 1qks_A          344 LHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLV-----------AIEDTGGQTPHPGRGANF-VHPTFGPVWATSH--  408 (567)
T ss_dssp             EEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEE-----------EEEECSSSSBCCTTCEEE-EETTTEEEEEEEB--
T ss_pred             ccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEE-----------EEEeccCcCCCCccceee-ECCCCCcEEEeCC--
Confidence            7789999999998877877899999999874 111           11110  01232211122 5787666665532  


Q ss_pred             CCCCCCCCeEEEeecCC
Q 010997          453 CDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~  469 (496)
                          ..++.|.+++...
T Consensus       409 ----~g~~~Vsvid~~~  421 (567)
T 1qks_A          409 ----MGDDSVALIGTDP  421 (567)
T ss_dssp             ----SSSSEEEEEECCT
T ss_pred             ----CCCCeEEEecCCC
Confidence                1248999999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.50  E-value=6e-12  Score=118.71  Aligned_cols=245  Identities=9%  Similarity=-0.031  Sum_probs=158.9

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  221 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~  221 (496)
                      ....+.+.  +++++++...++.|.+||..+.            +.+..+....  ....++++++++.+++...++.|.
T Consensus        45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~------------~~~~~i~~~~--~p~~i~~~~~g~lyv~~~~~~~v~  108 (328)
T 3dsm_A           45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINTF------------KEVGRITGFT--SPRYIHFLSDEKAYVTQIWDYRIF  108 (328)
T ss_dssp             CEEEEEEE--TTEEEEEEGGGTEEEEEETTTC------------CEEEEEECCS--SEEEEEEEETTEEEEEEBSCSEEE
T ss_pred             cceEEEEE--CCEEEEEEcCCCEEEEEECccc------------EEEEEcCCCC--CCcEEEEeCCCeEEEEECCCCeEE
Confidence            35667663  4567777777899999999988            4445554333  358999999886555555799999


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc-CC
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-DD  300 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~d  300 (496)
                      +||..+.........                                   ....+.......+++ ..+ .++++.. .+
T Consensus       109 ~iD~~t~~~~~~i~~-----------------------------------g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~  151 (328)
T 3dsm_A          109 IINPKTYEITGYIEC-----------------------------------PDMDMESGSTEQMVQ-YGK-YVYVNCWSYQ  151 (328)
T ss_dssp             EEETTTTEEEEEEEC-----------------------------------TTCCTTTCBCCCEEE-ETT-EEEEEECTTC
T ss_pred             EEECCCCeEEEEEEc-----------------------------------CCccccCCCcceEEE-ECC-EEEEEcCCCC
Confidence            999986543211000                                   000011124456666 333 5555554 48


Q ss_pred             CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC----------CcEEEEeCCCCCCCCCCCCceEecc
Q 010997          301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----------NSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d----------g~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      +.|.++|+.+++  ....... ......++++| ++.+++++..+          +.|.++|..+      ++....+..
T Consensus       152 ~~v~viD~~t~~--~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t------~~v~~~~~~  221 (328)
T 3dsm_A          152 NRILKIDTETDK--VVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAET------FTVEKQFKF  221 (328)
T ss_dssp             CEEEEEETTTTE--EEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTT------TEEEEEEEC
T ss_pred             CEEEEEECCCCe--EEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCC------CeEEEEEec
Confidence            999999998876  3433322 34567889999 88877776655          7899999987      555555543


Q ss_pred             C-CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          371 H-SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       371 h-~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      . ......++|+|++..++++.+   .|.+||+.+... ..          ..+  ...+......++++|++..++++.
T Consensus       222 ~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~-~~----------~~~--~~~~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          222 KLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRV-PV----------RPF--LEFRDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             CTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSC-CS----------SCS--BCCCSSCEEEEEECTTTCCEEEEE
T ss_pred             CCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCce-ee----------eee--ecCCCCceEEEEEcCCCCeEEEEc
Confidence            2 236889999999987764432   899999976421 10          000  011134678899999878888875


Q ss_pred             cCCCCCCCCCCeEEEeecC
Q 010997          450 SDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ..|   -..++.|.+|+..
T Consensus       286 ~~~---y~~~~~V~v~d~~  301 (328)
T 3dsm_A          286 AID---YQQQGIVYRYSPQ  301 (328)
T ss_dssp             CTT---SSSEEEEEEECTT
T ss_pred             ccc---cccCCEEEEECCC
Confidence            111   0224899999987

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.49  E-value=2.3e-12  Score=119.73  Aligned_cols=221  Identities=11%  Similarity=0.037  Sum_probs=148.6

Q ss_pred             eEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997          189 LILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  267 (496)
Q Consensus       189 ~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (496)
                      ..+..+.. ...+++|+|+++ +++++..++.|..||..++ .                                     
T Consensus        21 ~~l~~~~~-~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-------------------------------------   61 (296)
T 3e5z_A           21 RRLADGFT-WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-------------------------------------   61 (296)
T ss_dssp             EEEECCCS-SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-------------------------------------
T ss_pred             EEEecCCc-cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-------------------------------------
Confidence            34444444 457999999998 7888889999999998753 1                                     


Q ss_pred             cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc----CCCCeEEEEecCCCCcEEEE--
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILT--  341 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~i~~sp~~~~~l~s--  341 (496)
                          ..+..+...+.++++++++ .++++...++.|.+||..+++.  ......    ....++.++++| ++.++++  
T Consensus        62 ----~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~  133 (296)
T 3e5z_A           62 ----SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEW--ESIADSFEGKKLNSPNDVCLAP-DGSLWFSDP  133 (296)
T ss_dssp             ----EEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCE--EEEECEETTEECCCCCCEEECT-TSCEEEEEC
T ss_pred             ----EEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcE--EEEeeccCCCCCCCCCCEEECC-CCCEEEECC
Confidence                3444566778999999998 6777777789999999977762  222111    123567899999 8888887  


Q ss_pred             --EcC-------------CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCC
Q 010997          342 --GSA-------------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG  406 (496)
Q Consensus       342 --gs~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~  406 (496)
                        |+.             .+.|..+|..        ..+..+..+......++|+|++..+ ++.+.++.|.+||+...+
T Consensus       134 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~--------g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g  204 (296)
T 3e5z_A          134 TYGIDKPEEGYGGEMELPGRWVFRLAPD--------GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARG  204 (296)
T ss_dssp             SHHHHCGGGSSCCCCCSSSCEEEEECTT--------SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSS
T ss_pred             ccccccccccccccccCCCcEEEEECCC--------CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCC
Confidence              331             2345555543        2234445566778999999999965 788888999999987322


Q ss_pred             cccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc
Q 010997          407 KKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  486 (496)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~  486 (496)
                      ...         .....+  ..+...+..++++++|.. .++.         ++.|.+|+..       ++.+..+..+.
T Consensus       205 ~~~---------~~~~~~--~~~~~~p~~i~~d~~G~l-~v~~---------~~~v~~~~~~-------g~~~~~~~~~~  256 (296)
T 3e5z_A          205 ETE---------YQGVHF--TVEPGKTDGLRVDAGGLI-WASA---------GDGVHVLTPD-------GDELGRVLTPQ  256 (296)
T ss_dssp             CEE---------EEEEEE--CCSSSCCCSEEEBTTSCE-EEEE---------TTEEEEECTT-------SCEEEEEECSS
T ss_pred             cCc---------CCCeEe--eCCCCCCCeEEECCCCCE-EEEc---------CCeEEEECCC-------CCEEEEEECCC
Confidence            110         001122  334556788999998864 4433         2789999986       33344444455


Q ss_pred             ceEEEecc
Q 010997          487 AHVISCTS  494 (496)
Q Consensus       487 ~~v~~~~~  494 (496)
                      . +.+++|
T Consensus       257 ~-~~~~~f  263 (296)
T 3e5z_A          257 T-TSNLCF  263 (296)
T ss_dssp             C-CCEEEE
T ss_pred             C-ceeEEE
Confidence            5 666666

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.49  E-value=1e-11  Score=113.83  Aligned_cols=213  Identities=9%  Similarity=0.043  Sum_probs=149.3

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      .+++|++++.++.|++||..++            +.+..+..+....+.++.+.|+|++|++  .++.|..||. +++..
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG------------~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~   68 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK------------EIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGREL   68 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT------------EEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCC------------eEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEE
Confidence            3579999999999999999888            5566676665224789999999998883  4778999998 44332


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-CCceeEEEEccCCCceEEEEcC-CCeEEEEEcc
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-EDTVEDVTFCPSSAQEFCSVGD-DSCLILWDAR  309 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~-dg~i~iwd~~  309 (496)
                                                              ..+..+ ...+.++.+.+++ +++++.+. ++.|..+|. 
T Consensus        69 ----------------------------------------W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-  106 (276)
T 3no2_A           69 ----------------------------------------WNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-  106 (276)
T ss_dssp             ----------------------------------------EEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-
T ss_pred             ----------------------------------------EEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-
Confidence                                                    233332 2467889999999 67777766 778888875 


Q ss_pred             CCCccceeeec------cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCC
Q 010997          310 VGTSPVIKVEK------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD  383 (496)
Q Consensus       310 ~~~~~~~~~~~------~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~  383 (496)
                      .++  .+..+.      .+......+++.+ +++++++...++.|..||..       ++.+.++... ..+.++.+.++
T Consensus       107 ~Gk--~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-------G~~~w~~~~~-~~~~~~~~~~~  175 (276)
T 3no2_A          107 KGE--VLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-------GQLLNSVKLS-GTPFSSAFLDN  175 (276)
T ss_dssp             TSC--EEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-------SCEEEEEECS-SCCCEEEECTT
T ss_pred             CCC--EEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-------CCEEEEEECC-CCccceeEcCC
Confidence            444  222221      1112455667788 89999999999999999976       5777777754 34567888899


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC------CCCcceEEecCCCCcEEEE
Q 010997          384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH------RDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       384 ~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~V~~~~~~p~~~~l~~s  448 (496)
                      +. ++++++.++.|..+|..++               +.+.....+      ...+..++..+++..++++
T Consensus       176 g~-~~v~~~~~~~v~~~d~~tG---------------~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          176 GD-CLVACGDAHCFVQLNLESN---------------RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             SC-EEEECBTTSEEEEECTTTC---------------CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CC-EEEEeCCCCeEEEEeCcCC---------------cEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            88 5567777788999998864               334443321      1236677788877655443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.46  E-value=2.8e-11  Score=126.76  Aligned_cols=210  Identities=12%  Similarity=0.007  Sum_probs=140.4

Q ss_pred             eeEEEecCCCCcEEEEEeCCCc----------------EEEEeCCCCCCccccCCCCCCCCceEEec--CCCCcceeeee
Q 010997          143 VNRIRELPQNTKIVATHTDSPD----------------VLIWDVEAQPNRHAVLGATNSRPDLILTG--HQDNAEFALAM  204 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~l~~--h~~~~v~~l~~  204 (496)
                      +..++|+| +++.|+.++.++.                |++|++.+...          .....+..  |.. .+..+.|
T Consensus       173 ~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~----------~~~~v~~~~~~~~-~~~~~~~  240 (710)
T 2xdw_A          173 FSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS----------EDILCAEFPDEPK-WMGGAEL  240 (710)
T ss_dssp             SCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG----------GCEEEECCTTCTT-CEEEEEE
T ss_pred             cceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc----------cceEEeccCCCCe-EEEEEEE
Confidence            67899999 8888888877765                99999987621          11222333  333 3678999


Q ss_pred             cCCCCceEEecC-----CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997          205 CPTEPYVLSGGK-----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  279 (496)
Q Consensus       205 ~p~~~~l~sg~~-----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  279 (496)
                      +|+|++|+.++.     +..|.+||+.+.....                                 ........+..+..
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~---------------------------------~~~~~~~~l~~~~~  287 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI---------------------------------TGILKWVKLIDNFE  287 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS---------------------------------CSSCCCEEEECSSS
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECccccccc---------------------------------CCccceEEeeCCCC
Confidence            999998887664     5689999986410000                                 00001134455555


Q ss_pred             ceeEEEEccCCCceEEEEcCC---CeEEEEEccCCCccceeeeccCCC--CeEEEEecCCCCcEEEEEcCCCc--EEEEe
Q 010997          280 TVEDVTFCPSSAQEFCSVGDD---SCLILWDARVGTSPVIKVEKAHDA--DLHCVDWNPLDDNLILTGSADNS--VRMFD  352 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~--~v~~i~~sp~~~~~l~sgs~dg~--i~iwd  352 (496)
                      .+.. .|+|++..+++.+..+   +.|.+||+.++.......+..|..  .+..++|++ ++.+++++..|+.  |.+||
T Consensus       288 ~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~  365 (710)
T 2xdw_A          288 GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHD  365 (710)
T ss_dssp             SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEE
T ss_pred             cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEE
Confidence            5544 4788885555554433   369999998764212233334443  688899997 7888899988885  55667


Q ss_pred             CCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEECCCC
Q 010997          353 RRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKV  405 (496)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~---dg~i~iwd~~~~  405 (496)
                      +.+      +..+..+..+.+.|..+.++|++..++++.+.   .+.|.+||+.+.
T Consensus       366 ~~~------g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          366 LAT------GALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             TTT------CCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             CCC------CCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            655      56677788788889999999998766655443   478999999774

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.45  E-value=2e-11  Score=116.74  Aligned_cols=228  Identities=9%  Similarity=0.091  Sum_probs=143.2

Q ss_pred             CCceeEEEecCCCCcEEEEEeC--CCcEEEEeCCCCCCccccCCCCCCCCceE-EecCCCCcceeeeecCCC-CceEEec
Q 010997          140 PGEVNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLI-LTGHQDNAEFALAMCPTE-PYVLSGG  215 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-l~~h~~~~v~~l~~~p~~-~~l~sg~  215 (496)
                      ......++++| ++++|+++..  +++|.+||+.+.            +.... +. +..  ...+.+.|++ ..+++.+
T Consensus       107 g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~------------~~~~~~i~-~~~--~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A          107 LNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKG------------DYVEDVTA-AAG--CWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             CCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTT------------EEEEEEGG-GTT--EEEEEECTTSSSEEEEEE
T ss_pred             CCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCC------------cEEEEEec-CCC--cceeEEcCCCCeeEEEEC
Confidence            35678899999 7777877653  679999999887            23333 22 111  2335567765 5778888


Q ss_pred             CCCcEEEEecCC-ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          216 KDKSVVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       216 ~Dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      .||.+.+|++.. +........                                  ...+.....++ .+.+++++ ..+
T Consensus       171 ~dg~~~~v~~~~~g~~~~~~~~----------------------------------~~~~~~~~~~~-~~~~~~~g-~~~  214 (361)
T 2oiz_A          171 GDGGLLTINLGEDGKVASQSRS----------------------------------KQMFSVKDDPI-FIAPALDK-DKA  214 (361)
T ss_dssp             TTSSEEEEEECTTSSEEEEEEC----------------------------------CCCSCTTTSCB-CSCCEECS-SEE
T ss_pred             CCCcEEEEEECCCCcEeeeccc----------------------------------cceEcCCCCce-EEEecccC-CEE
Confidence            999999999864 211100000                                  00111111111 22335666 455


Q ss_pred             EEEcCCCeEEEEEccCCCccceeeecc------C----CCCeEEEEecCCCCcEEEEEcC-----------CCcEEEEeC
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKVEKA------H----DADLHCVDWNPLDDNLILTGSA-----------DNSVRMFDR  353 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~~~~------~----~~~v~~i~~sp~~~~~l~sgs~-----------dg~i~iwd~  353 (496)
                      +..+.++.|.++|+.............      +    ......++|+| ++..++++..           .+.|.+||+
T Consensus       215 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~  293 (361)
T 2oiz_A          215 HFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDT  293 (361)
T ss_dssp             EEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred             EEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec-CCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence            666778999999987654211111110      0    01122378999 6665555432           348999999


Q ss_pred             CCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCc
Q 010997          354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV  433 (496)
Q Consensus       354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  433 (496)
                      .+      .+.+.++..+.  +.+++|+|+|++|+ +++. +.|.+||+.+.             ..+++.....+....
T Consensus       294 ~t------~~~v~~i~~~~--p~~ia~spdg~~l~-v~n~-~~v~v~D~~t~-------------~l~~~~~i~~~G~~P  350 (361)
T 2oiz_A          294 KT------KQRVARIPGRD--ALSMTIDQQRNLML-TLDG-GNVNVYDISQP-------------EPKLLRTIEGAAEAS  350 (361)
T ss_dssp             TT------TEEEEEEECTT--CCEEEEETTTTEEE-EECS-SCEEEEECSSS-------------SCEEEEEETTSCSSE
T ss_pred             CC------CcEEEEEecCC--eeEEEECCCCCEEE-EeCC-CeEEEEECCCC-------------cceeeEEeccCCCCc
Confidence            98      78888888776  89999999999655 5555 99999999873             113444545666677


Q ss_pred             ceEEecCCCC
Q 010997          434 VDFHWNASDP  443 (496)
Q Consensus       434 ~~~~~~p~~~  443 (496)
                      ..++++|+|.
T Consensus       351 ~~~~~~p~G~  360 (361)
T 2oiz_A          351 LQVQFHPVGG  360 (361)
T ss_dssp             EEEEECCCSC
T ss_pred             EEEEecCCCC
Confidence            8899999875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.44  E-value=5e-12  Score=120.12  Aligned_cols=194  Identities=10%  Similarity=0.049  Sum_probs=130.7

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      .++.|++++...+|++|+.+ .+++|+++..........                             ...++.. ...+
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~-----------------------------~~~~~~~-~~~l   87 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDS-----------------------------TPLTFKW-EKEI   87 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSS-----------------------------CCCCCSE-EEEC
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccc-----------------------------ccccceE-EeeC
Confidence            47899999999999999987 455699865431110000                             0011112 2235


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  357 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~  357 (496)
                      .. |+.|+|  ++ ..|+++ .++.|++||+++..  .......|...+.++.+.+ . + +|+++.||.|.+||+..  
T Consensus        88 p~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~-p-~-~av~~~dG~L~v~dl~~--  155 (388)
T 1xip_A           88 PD-VIFVCF--HG-DQVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVN-N-T-LVILNSVNDLSALDLRT--  155 (388)
T ss_dssp             TT-EEEEEE--ET-TEEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECS-S-E-EEEEETTSEEEEEETTT--
T ss_pred             CC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhhh--ccCccceeecceeeEEecC-C-C-EEEEECCCCEEEEEccC--
Confidence            56 999999  66 677777 88999999998876  3444557788899888876 2 2 88899999999999997  


Q ss_pred             CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc-cCCCCCCCCCCCeeEEEecCCCCCcceE
Q 010997          358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK-VEQGPRTTNYPAGLFFQHAGHRDKVVDF  436 (496)
Q Consensus       358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~V~~~  436 (496)
                          +....    +...|++++|||+|   ++.|..||.+++|+....... ....    ..|+.+ ....+|...|.++
T Consensus       156 ----~~~~~----~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k~~I----~~Pp~~-~~~~~~~~~V~sI  219 (388)
T 1xip_A          156 ----KSTKQ----LAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQFEF----SLPSEL-EELPVEEYSPLSV  219 (388)
T ss_dssp             ----CCEEE----EEESEEEEEECSSE---EEEEETTSCEEEEEEETTEEEEEEEE----CCCHHH-HTSCTTTSEEEEE
T ss_pred             ----Ccccc----ccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcccccccee----cCCccc-ccccCCCeeEEEE
Confidence                33322    45689999999999   357888999999987763100 0000    000000 0112477889999


Q ss_pred             EecCCCCcEEEEec
Q 010997          437 HWNASDPWTVVSVS  450 (496)
Q Consensus       437 ~~~p~~~~l~~s~s  450 (496)
                      .|.+++.++++-..
T Consensus       220 ~wl~~~~flv~y~~  233 (388)
T 1xip_A          220 TILSPQDFLAVFGN  233 (388)
T ss_dssp             EESSSSEEEEEEEC
T ss_pred             EEecCCeEEEEEcC
Confidence            99998776654333

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.44  E-value=4.1e-12  Score=120.70  Aligned_cols=180  Identities=12%  Similarity=0.085  Sum_probs=128.5

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  221 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~  221 (496)
                      .++.+++++ ...++++|+.+ .++||++......... ......+.... .+..  |+.|+|  ++++|+++ .++.|+
T Consensus        39 ~~nlLais~-~~gll~a~~~~-~l~v~~~~~l~~~~~~-~~~~~~~~~~~-~lp~--V~~l~f--d~~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITS-DSTPLTFKWEK-EIPD--VIFVCF--HGDQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHS-SSCCCCCSEEE-ECTT--EEEEEE--ETTEEEEE-ESSEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCC-EEEEEEhhHhhhhhcc-ccccccceEEe-eCCC--eeEEEE--CCCEEEEE-cCCcEE
Confidence            589999999 77788888888 5666997654210000 00001222222 3444  899999  88999998 899999


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      +||+.+...                                        ......|...+.++.+.+.  + +++++.||
T Consensus       110 v~dv~sl~~----------------------------------------~~~~~~~~~~v~~i~~~~p--~-~av~~~dG  146 (388)
T 1xip_A          110 SLDLEELSE----------------------------------------FRTVTSFEKPVFQLKNVNN--T-LVILNSVN  146 (388)
T ss_dssp             EEESSSTTC----------------------------------------EEEEEECSSCEEEEEECSS--E-EEEEETTS
T ss_pred             EEEchhhhc----------------------------------------cCccceeecceeeEEecCC--C-EEEEECCC
Confidence            999975321                                        1234456667888777653  2 88899999


Q ss_pred             eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC--ceEe------c---c
Q 010997          302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP--INKF------E---G  370 (496)
Q Consensus       302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--~~~~------~---~  370 (496)
                      .|.+||+..+.  ...    +...|.|++|+| ++  ++.|..||.+++|+...      ...  ..++      .   +
T Consensus       147 ~L~v~dl~~~~--~~~----~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~------~~~~~k~~I~~Pp~~~~~~~  211 (388)
T 1xip_A          147 DLSALDLRTKS--TKQ----LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRN------GEMEKQFEFSLPSELEELPV  211 (388)
T ss_dssp             EEEEEETTTCC--EEE----EEESEEEEEECS-SE--EEEEETTSCEEEEEEET------TEEEEEEEECCCHHHHTSCT
T ss_pred             CEEEEEccCCc--ccc----ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCC------ccccccceecCCcccccccC
Confidence            99999998776  222    446899999999 77  78899999999998876      332  3445      2   4


Q ss_pred             CCCCEEEEEEcCCCCCEE
Q 010997          371 HSAAVLCVQWSPDKSSVF  388 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~ll  388 (496)
                      |...|.+|.|.+++.+++
T Consensus       212 ~~~~V~sI~wl~~~~flv  229 (388)
T 1xip_A          212 EEYSPLSVTILSPQDFLA  229 (388)
T ss_dssp             TTSEEEEEEESSSSEEEE
T ss_pred             CCeeEEEEEEecCCeEEE
Confidence            788999999999988654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.44  E-value=1.5e-11  Score=129.42  Aligned_cols=250  Identities=10%  Similarity=-0.033  Sum_probs=156.0

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCC-C----cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDS-P----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      |...+..++|+| ++++||.++.+ |    .|++||+.++.            ... ...+.. .+..++|+|| +.|+.
T Consensus       161 ~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~------------~~~-~~~~~~-~~~~~~wspD-~~l~~  224 (741)
T 1yr2_A          161 GATALDAWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGK------------PLA-DELKWV-KFSGLAWLGN-DALLY  224 (741)
T ss_dssp             --EEEEEEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCC------------EEE-EEEEEE-ESCCCEESTT-SEEEE
T ss_pred             CCEEEEeEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCC------------CCC-ccCCCc-eeccEEEECC-CEEEE
Confidence            444688999999 78888776553 3    69999999882            211 111111 1358899999 98888


Q ss_pred             ecCCCc--------------EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--cC
Q 010997          214 GGKDKS--------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GH  277 (496)
Q Consensus       214 g~~Dg~--------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h  277 (496)
                      ++.|+.              |.+|++.++...                                      ....+.  .+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~--------------------------------------~~lv~~~~~~  266 (741)
T 1yr2_A          225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA--------------------------------------DQPVFATPEL  266 (741)
T ss_dssp             EECCCC--------CCCCCEEEEEETTSCGGG--------------------------------------CEEEECCTTC
T ss_pred             EEecCcccccccccCCCCCEEEEEECCCCchh--------------------------------------CEEEeccCCC
Confidence            776654              788887643210                                      011222  23


Q ss_pred             CCceeEEEEccCCCceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC----CcE
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD----NSV  348 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d----g~i  348 (496)
                      ...+..+.|+|+| .+|+..+.+     ..|.+||+.++.......+..+...+....+ | ++..|+..+.+    +.|
T Consensus       267 ~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~-dg~~l~~~s~~~~~~~~l  343 (741)
T 1yr2_A          267 PKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD-G-VGDQLWFVSGDGAPLKKI  343 (741)
T ss_dssp             TTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE-E-ETTEEEEEECTTCTTCEE
T ss_pred             CeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe-c-cCCEEEEEECCCCCCCEE
Confidence            3357899999999 555555433     4899999987621112233344445555543 7 67777766653    459


Q ss_pred             EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC
Q 010997          349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  428 (496)
Q Consensus       349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (496)
                      .+||+....    ......+..+...+..++|+  +..++++...|+..+||.+...+              .....+..
T Consensus       344 ~~~d~~~~~----~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g--------------~~~~~l~~  403 (741)
T 1yr2_A          344 VRVDLSGST----PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDG--------------KPAGAVSL  403 (741)
T ss_dssp             EEEECSSSS----CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTS--------------CEEEECBC
T ss_pred             EEEeCCCCc----cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCC--------------CceeeccC
Confidence            999987621    01222334444556678887  44578888889988888665321              11222332


Q ss_pred             -CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          429 -HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       429 -h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                       +...|..++++|++..++++.+    +....++|++||+..
T Consensus       404 ~~~~~v~~~~~s~d~~~l~~~~s----s~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          404 PGIGSASGLSGRPGDRHAYLSFS----SFTQPATVLALDPAT  441 (741)
T ss_dssp             SSSCEEEEEECCBTCSCEEEEEE----ETTEEEEEEEEETTT
T ss_pred             CCCeEEEEeecCCCCCEEEEEEc----CCCCCCEEEEEECCC
Confidence             3567888999999888877665    445568999999873

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.41  E-value=5.1e-11  Score=108.79  Aligned_cols=200  Identities=10%  Similarity=0.018  Sum_probs=140.9

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      +...+..+++.+ +++++++.. ++.|.+||......             ..+.......+.+++++++|+++++...++
T Consensus        65 ~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-------------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~  129 (270)
T 1rwi_B           65 GLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-------------TVLPFDGLNYPEGLAVDTQGAVYVADRGNN  129 (270)
T ss_dssp             SCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-------------EECCCCSCSSEEEEEECTTCCEEEEEGGGT
T ss_pred             CcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-------------eeeecCCcCCCcceEECCCCCEEEEECCCC
Confidence            335678899999 677777666 88999999876521             111111112468999999998888777788


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .|.+|+..+....                                        .........+.++++++++ .++++..
T Consensus       130 ~i~~~~~~~~~~~----------------------------------------~~~~~~~~~p~~i~~~~~g-~l~v~~~  168 (270)
T 1rwi_B          130 RVVKLAAGSKTQT----------------------------------------VLPFTGLNDPDGVAVDNSG-NVYVTDT  168 (270)
T ss_dssp             EEEEECTTCCSCE----------------------------------------ECCCCSCCSCCCEEECTTC-CEEEEEG
T ss_pred             EEEEEECCCceeE----------------------------------------eeccccCCCceeEEEeCCC-CEEEEEC
Confidence            9999975432110                                        0011122356789999988 6778877


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-cCCCCEEE
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLC  377 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~  377 (496)
                      .++.|.+||.....  .......+...+..|++++ ++.++++...++.|.+||...       ....... .+...+.+
T Consensus       169 ~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~-------~~~~~~~~~~~~~p~~  238 (270)
T 1rwi_B          169 DNNRVVKLEAESNN--QVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGS-------TTSTVLPFTGLNTPLA  238 (270)
T ss_dssp             GGTEEEEECTTTCC--EEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTC-------SCCEECCCCSCSCEEE
T ss_pred             CCCEEEEEecCCCc--eEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCC-------CcceeeccCCCCCcee
Confidence            88999999987655  2222223336789999999 788888888889999999875       2222222 23357899


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ++++|+|. ++++...++.|+++++...
T Consensus       239 i~~~~~g~-l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          239 VAVDSDRT-VYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEECTTCC-EEEEEGGGTEEEEECCCGG
T ss_pred             EEECCCCC-EEEEECCCCEEEEEcCCCc
Confidence            99999997 7888888999999998763

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.41  E-value=7.2e-10  Score=102.53  Aligned_cols=238  Identities=6%  Similarity=-0.004  Sum_probs=160.5

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      +...+..+++.+ ++.++++...++.|..||....  .          ....+..... .+.++++.+++.++++...++
T Consensus        55 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~--~----------~~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~  120 (299)
T 2z2n_A           55 PDAKVMCLTISS-DGEVWFTENAANKIGRITKKGI--I----------KEYTLPNPDS-APYGITEGPNGDIWFTEMNGN  120 (299)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSC--E----------EEEECSSTTC-CEEEEEECTTSCEEEEETTTT
T ss_pred             ccCceeeEEECC-CCCEEEeCCCCCeEEEECCCCc--E----------EEEeCCCcCC-CceeeEECCCCCEEEEecCCc
Confidence            446789999998 7788888777889999997622  0          0011111222 468999999998888877788


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .|.+||. ++....                                       .........+.++++.+++ .++++..
T Consensus       121 ~i~~~d~-~g~~~~---------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~~~  159 (299)
T 2z2n_A          121 RIGRITD-DGKIRE---------------------------------------YELPNKGSYPSFITLGSDN-ALWFTEN  159 (299)
T ss_dssp             EEEEECT-TCCEEE---------------------------------------EECSSTTCCEEEEEECTTS-CEEEEET
T ss_pred             eEEEECC-CCCEEE---------------------------------------ecCCCCCCCCceEEEcCCC-CEEEEeC
Confidence            9999987 322110                                       0111233467899999988 6777777


Q ss_pred             CCCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-EeccCCCCEE
Q 010997          299 DDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVL  376 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i~  376 (496)
                      .++.|..||. +++  .... .......+.++++++ ++.++++...++.|.+||. +      +.... ....+...+.
T Consensus       160 ~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~~  228 (299)
T 2z2n_A          160 QNNAIGRITE-SGD--ITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-S------GEITEFKIPTPNARPH  228 (299)
T ss_dssp             TTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCEE
T ss_pred             CCCEEEEEcC-CCc--EEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-C------CcEEEEECCCCCCCce
Confidence            7889999998 554  2221 223456788999999 7888877777889999998 4      33222 2233456799


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCC
Q 010997          377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDST  456 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sg  456 (496)
                      +++++++|. ++++...++.|.+||...  .             ...+....+...+.++++ +++. +.++.+      
T Consensus       229 ~i~~~~~g~-l~v~~~~~~~i~~~d~~g--~-------------~~~~~~~~~~~~~~~i~~-~~g~-l~v~~~------  284 (299)
T 2z2n_A          229 AITAGAGID-LWFTEWGANKIGRLTSNN--I-------------IEEYPIQIKSAEPHGICF-DGET-IWFAME------  284 (299)
T ss_dssp             EEEECSTTC-EEEEETTTTEEEEEETTT--E-------------EEEEECSSSSCCEEEEEE-CSSC-EEEEET------
T ss_pred             eEEECCCCC-EEEeccCCceEEEECCCC--c-------------eEEEeCCCCCCccceEEe-cCCC-EEEEec------
Confidence            999999987 676665678999999832  1             112223344567889999 7665 444432      


Q ss_pred             CCCCeEEEeecC
Q 010997          457 GGGGTLQIWRMS  468 (496)
Q Consensus       457 g~Dg~i~iw~~~  468 (496)
                        .+.|..+++.
T Consensus       285 --~~~l~~~~~~  294 (299)
T 2z2n_A          285 --CDKIGKLTLI  294 (299)
T ss_dssp             --TTEEEEEEEC
T ss_pred             --CCcEEEEEcC
Confidence              2567777776

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.41  E-value=3.5e-10  Score=109.81  Aligned_cols=240  Identities=13%  Similarity=0.116  Sum_probs=156.3

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC--
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK--  218 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg--  218 (496)
                      .....|++.+ +++++++...++.|++||..++            ........ .. ... ++|+++++.|+++..++  
T Consensus       131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g------------~~~~~~~~-~~-~~~-ia~~~~g~~l~~~d~~~~~  194 (409)
T 3hrp_A          131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDN------------KVTTVHPG-FK-GGK-PAVTKDKQRVYSIGWEGTH  194 (409)
T ss_dssp             CCEEEEEECS-TTEEEEEETTTTEEEEEETTTT------------EEEEEEET-CC-BCB-CEECTTSSEEEEEBSSTTC
T ss_pred             CCceEEEEeC-CCCEEEEecCCCcEEEEECCCC------------EEEEeecc-CC-CCc-eeEecCCCcEEEEecCCCc
Confidence            4678999998 7888888888899999999876            22222333 22 234 99999999888888766  


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCceEEEE
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      .|.+++.........                                     +..+.. ....+.+++++|++..+++ +
T Consensus       195 ~I~~~d~~~~~~~~~-------------------------------------~g~~~~~~~~~p~~iav~p~~g~lyv-~  236 (409)
T 3hrp_A          195 TVYVYMKASGWAPTR-------------------------------------IGQLGSTFSGKIGAVALDETEEWLYF-V  236 (409)
T ss_dssp             EEEEEEGGGTTCEEE-------------------------------------EEECCTTSCSCCCBCEECTTSSEEEE-E
T ss_pred             eEEEEEcCCCceeEE-------------------------------------eeeccchhcCCcEEEEEeCCCCeEEE-E
Confidence            788888754321000                                     000111 3356788999995535444 6


Q ss_pred             cCCCeEEEEEccCCCccceee--eccCCCCe--EEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC-
Q 010997          298 GDDSCLILWDARVGTSPVIKV--EKAHDADL--HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-  372 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v--~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-  372 (496)
                      ..++.|..||...+.......  ..++...-  +.++|+|.++.++++-..++.|+.||...       . +..+.++. 
T Consensus       237 d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g-------~-~~~~~g~~~  308 (409)
T 3hrp_A          237 DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG-------E-CEWFCGSAT  308 (409)
T ss_dssp             CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC-------C-EEEEEECTT
T ss_pred             ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC-------C-EEEEEeCCC
Confidence            678899999998765211100  11222211  39999995577777777889999998764       2 33333322 


Q ss_pred             --------------CCEEEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC--------
Q 010997          373 --------------AAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH--------  429 (496)
Q Consensus       373 --------------~~i~~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h--------  429 (496)
                                    .....++++|+|. |+++-. .++.|+.||+... .               +..+.++        
T Consensus       309 ~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G-~---------------v~~~~g~~~~~g~~~  371 (409)
T 3hrp_A          309 QKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDG-Y---------------VSTVAGQVDVASQID  371 (409)
T ss_dssp             CCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTT-E---------------EEEEEECTTCBSCCC
T ss_pred             CCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCC-E---------------EEEEeCCCCCCCcCC
Confidence                          3478999999998 777877 7899999997653 1               1122222        


Q ss_pred             -------CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          430 -------RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       430 -------~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                             -.....+++++++ .++++-..       ++.|+.+++
T Consensus       372 g~~~~~~~~~P~giavd~~g-~lyVad~~-------n~~Ir~i~~  408 (409)
T 3hrp_A          372 GTPLEATFNYPYDICYDGEG-GYWIAEAW-------GKAIRKYAV  408 (409)
T ss_dssp             BSTTTCCBSSEEEEEECSSS-EEEEEEST-------TCEEEEEEE
T ss_pred             CChhceEeCCceEEEEcCCC-CEEEEECC-------CCeEEEEEe
Confidence                   2357889999985 55655443       378887765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.39  E-value=2.5e-10  Score=105.96  Aligned_cols=230  Identities=13%  Similarity=0.068  Sum_probs=150.9

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  222 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i  222 (496)
                      --...|+|.++.++++...++.|+.||..+..            . ..+. ... .+.+++++++|+++++ . ++.|.+
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~------------~-~~~~-~~~-~~~~i~~~~dG~l~v~-~-~~~l~~   77 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ------------V-QRVT-MDA-PVSSVALRQSGGYVAT-I-GTKFCA   77 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCC------------E-EEEE-CSS-CEEEEEEBTTSSEEEE-E-TTEEEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCc------------E-EEEe-CCC-ceEEEEECCCCCEEEE-E-CCeEEE
Confidence            45778899777888888889999999998762            1 1222 222 5789999999995554 3 568999


Q ss_pred             EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccCCCceEEEEcC-
Q 010997          223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFCSVGD-  299 (496)
Q Consensus       223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~-  299 (496)
                      ||.+++.....                                      ....  .....+++++++|+| .++++... 
T Consensus        78 ~d~~~g~~~~~--------------------------------------~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~  118 (297)
T 3g4e_A           78 LNWKEQSAVVL--------------------------------------ATVDNDKKNNRFNDGKVDPAG-RYFAGTMAE  118 (297)
T ss_dssp             EETTTTEEEEE--------------------------------------EECCTTCSSEEEEEEEECTTS-CEEEEEEEC
T ss_pred             EECCCCcEEEE--------------------------------------EecCCCCCCCCCCCEEECCCC-CEEEecCCc
Confidence            99875432110                                      0000  012457899999998 55554422 


Q ss_pred             --------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCC-----Cc
Q 010997          300 --------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGS-----PI  365 (496)
Q Consensus       300 --------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~-----~~  365 (496)
                              ...-.||.+....  .......+....+.++|+| ++..| ++.+.++.|.+||+....    +.     .+
T Consensus       119 ~~~~~~~~~~~~~l~~~d~~g--~~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~----G~~~~~~~~  191 (297)
T 3g4e_A          119 ETAPAVLERHQGALYSLFPDH--HVKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQT----GQISNRRSV  191 (297)
T ss_dssp             CSBTTBCCTTCEEEEEECTTS--CEEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTT----CCEEEEEEE
T ss_pred             ccccccccCCCcEEEEEECCC--CEEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCC----CcccCcEEE
Confidence                    1234555554322  1222223445678999999 77644 666778899999974211    22     12


Q ss_pred             eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEec-CCCCc
Q 010997          366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASDPW  444 (496)
Q Consensus       366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~-p~~~~  444 (496)
                      ..+..+...+..++++++|. |+++...++.|.+||..+.               .++.....+...+++++|. |++..
T Consensus       192 ~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG---------------~~~~~i~~p~~~~t~~~f~g~d~~~  255 (297)
T 3g4e_A          192 YKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTG---------------KRLQTVKLPVDKTTSCCFGGKNYSE  255 (297)
T ss_dssp             EECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTC---------------CEEEEEECSSSBEEEEEEESGGGCE
T ss_pred             EECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCc---------------eEEEEEECCCCCceEEEEeCCCCCE
Confidence            23333456788999999996 7777777788999998753               3444555556679999998 88888


Q ss_pred             EEEEecC
Q 010997          445 TVVSVSD  451 (496)
Q Consensus       445 l~~s~s~  451 (496)
                      |+++.+.
T Consensus       256 L~vt~~~  262 (297)
T 3g4e_A          256 MYVTCAR  262 (297)
T ss_dssp             EEEEEBC
T ss_pred             EEEEcCC
Confidence            8887664

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.38  E-value=1.4e-09  Score=100.72  Aligned_cols=241  Identities=8%  Similarity=-0.032  Sum_probs=161.8

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      ....+.++++.+ ++++.++...++.|.+||.. +...           ...+..+.. .+.++++.++++++++...++
T Consensus        18 ~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~-----------~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~   83 (300)
T 2qc5_A           18 PDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIK-----------EFEVPTPDA-KVMCLIVSSLGDIWFTENGAN   83 (300)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-----------EEECSSTTC-CEEEEEECTTSCEEEEETTTT
T ss_pred             CCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceE-----------EEECCCCCC-cceeEEECCCCCEEEEecCCC
Confidence            445788999999 77888877778999999987 4110           011122222 478999999998877777788


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .|..+|.. +....                                       ..+......+.++++.+++ .++++..
T Consensus        84 ~v~~~d~~-g~~~~---------------------------------------~~~~~~~~~~~~i~~~~~g-~l~v~~~  122 (300)
T 2qc5_A           84 KIGKLSKK-GGFTE---------------------------------------YPLPQPDSGPYGITEGLNG-DIWFTQL  122 (300)
T ss_dssp             EEEEECTT-SCEEE---------------------------------------EECSSTTCCEEEEEECSTT-CEEEEET
T ss_pred             eEEEECCC-CCeEE---------------------------------------ecCCCCCCCCccceECCCC-CEEEEcc
Confidence            99999876 32110                                       0111123467899999988 6777777


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-EeccCCCCEEE
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLC  377 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i~~  377 (496)
                      .++.|..||.. ++. ...........+.++++++ ++.++++...++.|..+|. .      +.... ....+...+..
T Consensus       123 ~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~~~~~  192 (300)
T 2qc5_A          123 NGDRIGKLTAD-GTI-YEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-T------GKLEEYPLPTNAAAPVG  192 (300)
T ss_dssp             TTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-T------CCEEEEECSSTTCCEEE
T ss_pred             CCCeEEEECCC-CCE-EEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-C------CcEEEeeCCCCCCCcce
Confidence            78899999987 441 1122223456789999999 7887777777889999998 3      23222 22234457899


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG  457 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg  457 (496)
                      +++++++. ++++....+.|.+||....               ........+...+.++++++++. +.++...      
T Consensus       193 i~~d~~g~-l~v~~~~~~~i~~~~~~g~---------------~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~------  249 (300)
T 2qc5_A          193 ITSGNDGA-LWFVEIMGNKIGRITTTGE---------------ISEYDIPTPNARPHAITAGKNSE-IWFTEWG------  249 (300)
T ss_dssp             EEECTTSS-EEEEETTTTEEEEECTTCC---------------EEEEECSSTTCCEEEEEECSTTC-EEEEETT------
T ss_pred             EEECCCCC-EEEEccCCCEEEEEcCCCc---------------EEEEECCCCCCCceEEEECCCCC-EEEeccC------
Confidence            99999886 6766666778999998321               11122233455688999999876 5554432      


Q ss_pred             CCCeEEEeecC
Q 010997          458 GGGTLQIWRMS  468 (496)
Q Consensus       458 ~Dg~i~iw~~~  468 (496)
                       ++.|..|+..
T Consensus       250 -~~~i~~~~~~  259 (300)
T 2qc5_A          250 -ANQIGRITND  259 (300)
T ss_dssp             -TTEEEEECTT
T ss_pred             -CCeEEEECCC
Confidence             3788888875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.33  E-value=2.5e-10  Score=118.91  Aligned_cols=248  Identities=14%  Similarity=0.107  Sum_probs=155.1

Q ss_pred             CCCceeEEEecCCCCcEEEE-----EeCCCcEEEEeCCCCCCccccCCCCCCCCce-EEecCCCCcceeeeecCCCCceE
Q 010997          139 HPGEVNRIRELPQNTKIVAT-----HTDSPDVLIWDVEAQPNRHAVLGATNSRPDL-ILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      |...+..++|+| ++++||-     |+....|++||+.++.            ... .+.+.   ....++|+ |++.|+
T Consensus       127 ~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~------------~~~~~~~~~---k~~~~~Ws-Dg~~l~  189 (693)
T 3iuj_A          127 GTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQ------------PLETPLKDV---KFSGISWL-GNEGFF  189 (693)
T ss_dssp             SCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCS------------EEEEEEEEE---ESCCCEEE-TTTEEE
T ss_pred             CcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCC------------CCccccCCc---eeccEEEe-CCCEEE
Confidence            455788899999 7777773     3333579999999882            111 12211   13578999 999888


Q ss_pred             EecCCCc-------------EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--c-
Q 010997          213 SGGKDKS-------------VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--G-  276 (496)
Q Consensus       213 sg~~Dg~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-  276 (496)
                      .++.+..             |.+|++.+....                                      ....+.  . 
T Consensus       190 y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~--------------------------------------~~~v~~~~~~  231 (693)
T 3iuj_A          190 YSSYDKPDGSELSARTDQHKVYFHRLGTAQED--------------------------------------DRLVFGAIPA  231 (693)
T ss_dssp             EEESSCCC-------CCCCEEEEEETTSCGGG--------------------------------------CEEEESCSGG
T ss_pred             EEEecCcccccccccCCCcEEEEEECCCCccc--------------------------------------ceEEEecCCC
Confidence            8877743             888888654221                                      012222  2 


Q ss_pred             CCCceeEEEEccCCCceEEEEcC---CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC---CcEEE
Q 010997          277 HEDTVEDVTFCPSSAQEFCSVGD---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD---NSVRM  350 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d---g~i~i  350 (496)
                      |...+..+.|+|++..++++.+.   +..|.++|+.++.... ..+..+....... |++.++.++++...+   +.|..
T Consensus       232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~-~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~  309 (693)
T 3iuj_A          232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL-LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVT  309 (693)
T ss_dssp             GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC-EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEE
T ss_pred             CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce-EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEE
Confidence            33456789999999655555543   3589999998764222 3334555555554 555244555555444   67999


Q ss_pred             EeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCcccCCCCCCCCCCCeeEEEecC
Q 010997          351 FDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  428 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (496)
                      +|+.+..    ......+..|...+.  .|++++.+|+++...++  .|++||+... .              .......
T Consensus       310 ~d~~~~~----~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~--------------~~~l~~p  368 (693)
T 3iuj_A          310 VDAANPG----PAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-R--------------VREVALP  368 (693)
T ss_dssp             EETTSCC----GGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-E--------------EEEECCS
T ss_pred             EeCCCCC----ccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-e--------------eEEeecC
Confidence            9998721    112356666766665  89999998776666665  6888888642 1              1111112


Q ss_pred             CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          429 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       429 h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ....+..+.+++++..++++.+..    ..-++|..||+.
T Consensus       369 ~~~~~~~~~~~~d~~~l~~~~ss~----~tP~~l~~~d~~  404 (693)
T 3iuj_A          369 GLGSVSGFNGKHDDPALYFGFENY----AQPPTLYRFEPK  404 (693)
T ss_dssp             SSSEEEECCCCTTCSCEEEEEECS----SSCCEEEEECTT
T ss_pred             CCceEEeeecCCCCCEEEEEecCC----CCCCEEEEEECC
Confidence            334577788888888888776532    233678888875

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.32  E-value=1.4e-09  Score=102.26  Aligned_cols=231  Identities=8%  Similarity=0.012  Sum_probs=144.7

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  222 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i  222 (496)
                      ....+|+|+++.++++...++.|.+||..++.            . ..+. ... .+.+++|+++|+++++. .+ .|.+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~------------~-~~~~-~~~-~v~~i~~~~dg~l~v~~-~~-gl~~  113 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGR------------K-TVHA-LPF-MGSALAKISDSKQLIAS-DD-GLFL  113 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE------------E-EEEE-CSS-CEEEEEEEETTEEEEEE-TT-EEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc------------E-EEEE-CCC-cceEEEEeCCCeEEEEE-CC-CEEE
Confidence            45778999667788888888999999987761            1 1122 122 57899999999877765 33 4899


Q ss_pred             EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC---
Q 010997          223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD---  299 (496)
Q Consensus       223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---  299 (496)
                      ||..++........                             .       .......++++.++|++ .++++...   
T Consensus       114 ~d~~~g~~~~~~~~-----------------------------~-------~~~~~~~~~~i~~d~~G-~l~v~~~~~~~  156 (326)
T 2ghs_A          114 RDTATGVLTLHAEL-----------------------------E-------SDLPGNRSNDGRMHPSG-ALWIGTMGRKA  156 (326)
T ss_dssp             EETTTCCEEEEECS-----------------------------S-------TTCTTEEEEEEEECTTS-CEEEEEEETTC
T ss_pred             EECCCCcEEEEeeC-----------------------------C-------CCCCCCCCCCEEECCCC-CEEEEeCCCcC
Confidence            99865432110000                             0       00012468899999998 55554432   


Q ss_pred             ---CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCC--CC-CCCCCCCCceEeccCC
Q 010997          300 ---DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRR--NL-TSNGVGSPINKFEGHS  372 (496)
Q Consensus       300 ---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~--~~-~~~~~~~~~~~~~~h~  372 (496)
                         .+.|..+|  .++   ...+..+....+.++|+| ++..| ++.+.++.|.+||+.  +. .. .....+..+....
T Consensus       157 ~~~~~~l~~~~--~g~---~~~~~~~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~-~~~~~~~~~~~~~  229 (326)
T 2ghs_A          157 ETGAGSIYHVA--KGK---VTKLFADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPT-GKAEVFIDSTGIK  229 (326)
T ss_dssp             CTTCEEEEEEE--TTE---EEEEEEEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBS-SCCEEEEECTTSS
T ss_pred             CCCceEEEEEe--CCc---EEEeeCCCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcc-cCceEEEECCCCC
Confidence               24555555  333   222223334678999999 77655 555667899999986  31 10 0001122333344


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEec-CCCCcEEEEecC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASDPWTVVSVSD  451 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~-p~~~~l~~s~s~  451 (496)
                      ..+..+++.++|. ++++...++.|.+||...                ..+.....+...+++++|. +++..++++.+.
T Consensus       230 ~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g----------------~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          230 GGMDGSVCDAEGH-IWNARWGEGAVDRYDTDG----------------NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             SEEEEEEECTTSC-EEEEEETTTEEEEECTTC----------------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCCeeEECCCCC-EEEEEeCCCEEEEECCCC----------------CEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            5678999999997 665665678899999743                2333344455578999998 887777776553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.31  E-value=6.7e-09  Score=95.97  Aligned_cols=227  Identities=6%  Similarity=-0.051  Sum_probs=152.1

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      +...+..+++.+ ++.++++...++.|..||.. +...           ...+..... .+.++++.++++++++...++
T Consensus        60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~-----------~~~~~~~~~-~~~~i~~~~~g~l~v~~~~~~  125 (300)
T 2qc5_A           60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFT-----------EYPLPQPDS-GPYGITEGLNGDIWFTQLNGD  125 (300)
T ss_dssp             TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEE-----------EEECSSTTC-CEEEEEECSTTCEEEEETTTT
T ss_pred             CCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeE-----------EecCCCCCC-CCccceECCCCCEEEEccCCC
Confidence            346788999988 77788777778899999987 4110           011111222 468999999998888877788


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .|..+|.. +....                                       ..+......+.++++.+++ .++++..
T Consensus       126 ~i~~~~~~-g~~~~---------------------------------------~~~~~~~~~~~~i~~d~~g-~l~v~~~  164 (300)
T 2qc5_A          126 RIGKLTAD-GTIYE---------------------------------------YDLPNKGSYPAFITLGSDN-ALWFTEN  164 (300)
T ss_dssp             EEEEECTT-SCEEE---------------------------------------EECSSTTCCEEEEEECTTS-SEEEEET
T ss_pred             eEEEECCC-CCEEE---------------------------------------ccCCCCCCCceeEEECCCC-CEEEEec
Confidence            99999875 22110                                       0011123467899999988 6777777


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce-EeccCCCCEEE
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN-KFEGHSAAVLC  377 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~i~~  377 (496)
                      .++.|..||. .+.. .......+...+..+++++ ++.++++....+.|.+||..       +.... .+..+...+.+
T Consensus       165 ~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~-------g~~~~~~~~~~~~~~~~  234 (300)
T 2qc5_A          165 QNNSIGRITN-TGKL-EEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTT-------GEISEYDIPTPNARPHA  234 (300)
T ss_dssp             TTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTT-------CCEEEEECSSTTCCEEE
T ss_pred             CCCeEEEECC-CCcE-EEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCC-------CcEEEEECCCCCCCceE
Confidence            7889999998 4441 1112223445789999999 78888877777889999983       23222 23334567899


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~  446 (496)
                      +++++++. ++++...++.|..||...  .             ...+........+.++++.+++...+
T Consensus       235 i~~d~~g~-l~v~~~~~~~i~~~~~~g--~-------------~~~~~~~~~~~~~~~i~~~~~g~l~v  287 (300)
T 2qc5_A          235 ITAGKNSE-IWFTEWGANQIGRITNDN--T-------------IQEYQLQTENAEPHGITFGKDGSVWF  287 (300)
T ss_dssp             EEECSTTC-EEEEETTTTEEEEECTTS--C-------------EEEEECCSTTCCCCCEEECTTSCEEE
T ss_pred             EEECCCCC-EEEeccCCCeEEEECCCC--c-------------EEEEECCccCCccceeEeCCCCCEEE
Confidence            99999987 676666678999999832  1             11222233345688999999876444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.31  E-value=3.9e-10  Score=106.20  Aligned_cols=202  Identities=9%  Similarity=-0.030  Sum_probs=134.5

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC----CcceeeeecCCCCc
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD----NAEFALAMCPTEPY  210 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~----~~v~~l~~~p~~~~  210 (496)
                      ..+........+++++ ++.++++...++.|.+||..+.            +....+.....    .....+++ .++..
T Consensus        78 ~~i~~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~------------~~~~~i~~g~~~~~~~~p~~i~~-~~~~l  143 (328)
T 3dsm_A           78 GRITGFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTY------------EITGYIECPDMDMESGSTEQMVQ-YGKYV  143 (328)
T ss_dssp             EEEECCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTT------------EEEEEEECTTCCTTTCBCCCEEE-ETTEE
T ss_pred             EEcCCCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCC------------eEEEEEEcCCccccCCCcceEEE-ECCEE
Confidence            3445556788999988 5666666658899999999887            22233332220    02356777 34444


Q ss_pred             eEEec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          211 VLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       211 l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      +++.. .++.|.++|+.++...                                        ..+.. ......+.++|+
T Consensus       144 yv~~~~~~~~v~viD~~t~~~~----------------------------------------~~i~~-g~~p~~i~~~~d  182 (328)
T 3dsm_A          144 YVNCWSYQNRILKIDTETDKVV----------------------------------------DELTI-GIQPTSLVMDKY  182 (328)
T ss_dssp             EEEECTTCCEEEEEETTTTEEE----------------------------------------EEEEC-SSCBCCCEECTT
T ss_pred             EEEcCCCCCEEEEEECCCCeEE----------------------------------------EEEEc-CCCccceEEcCC
Confidence            44443 4899999999865432                                        11211 123467889998


Q ss_pred             CCceEEEEcCC----------CeEEEEEccCCCccceeeecc-CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          290 SAQEFCSVGDD----------SCLILWDARVGTSPVIKVEKA-HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       290 ~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      + .+++++..+          +.|.++|..+.+  ....... .......++|+| ++..|.++..  .|.+||..+   
T Consensus       183 G-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~v~~~d~~t---  253 (328)
T 3dsm_A          183 N-KMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--DIWRMPVEA---  253 (328)
T ss_dssp             S-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEEEEECCTTCCCEEEEECT-TSCEEEEESS--SEEEEETTC---
T ss_pred             C-CEEEEECCCccCCccccCCceEEEEECCCCe--EEEEEecCCCCCceeEEEec-CCCEEEEEcc--EEEEEECCC---
Confidence            8 566666554          789999998776  3333322 134689999999 7787777654  899999987   


Q ss_pred             CCCCCCce--EeccCCCCEEEEEEcCCCCCEEEEE----eCCCcEEEEECC
Q 010997          359 NGVGSPIN--KFEGHSAAVLCVQWSPDKSSVFGSS----AEDGLLNIWDYE  403 (496)
Q Consensus       359 ~~~~~~~~--~~~~h~~~i~~l~~sp~~~~llas~----~~dg~i~iwd~~  403 (496)
                         ++...  .+.........++++|++..++++.    ..++.|.+||..
T Consensus       254 ---~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          254 ---DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             ---SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             ---CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence               33221  1222246789999999777788887    678999999987

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.30  E-value=4.3e-10  Score=105.00  Aligned_cols=208  Identities=9%  Similarity=0.083  Sum_probs=137.6

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC-
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD-  217 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D-  217 (496)
                      +...+..+++.+++++++++... +.|.+||.. +.......        ....+.....+.+++++++|+++++...+ 
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~-g~~~~~~~--------~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  138 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFEEIAK--------KDSEGRRMQGCNDCAFDYEGNLWITAPAGE  138 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEEECCS--------BCTTSCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred             CCCCCceEEEecCCCcEEEEECC-CCEEEEeCC-CCEEEEEe--------ccCCCccccCCcCEEECCCCCEEEEecCcc
Confidence            44678999999932776666544 479999987 42110000        00011112246899999999877776654 


Q ss_pred             --------------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997          218 --------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED  283 (496)
Q Consensus       218 --------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  283 (496)
                                    +.|..||.. +..                                         ..+..+......
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~-----------------------------------------~~~~~~~~~~~~  176 (314)
T 1pjx_A          139 VAPADYTRSMQEKFGSIYCFTTD-GQM-----------------------------------------IQVDTAFQFPNG  176 (314)
T ss_dssp             CTTSCCCBTTSSSCEEEEEECTT-SCE-----------------------------------------EEEEEEESSEEE
T ss_pred             cccccccccccCCCCeEEEECCC-CCE-----------------------------------------EEeccCCCCcce
Confidence                          455555543 110                                         112223345678


Q ss_pred             EEEc----cCCCceEEEEcCCCeEEEEEcc-CCCcc---ceeeeccCC-CCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997          284 VTFC----PSSAQEFCSVGDDSCLILWDAR-VGTSP---VIKVEKAHD-ADLHCVDWNPLDDNLILTGSADNSVRMFDRR  354 (496)
Q Consensus       284 l~~~----~~~~~~l~s~~~dg~i~iwd~~-~~~~~---~~~~~~~~~-~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~  354 (496)
                      ++|+    |++..++++...++.|.+||+. .+...   ....+..+. ..+..+++++ +++++++...++.|.+||..
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTT
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCC
Confidence            8999    9884455666778999999986 33210   111222333 5678999999 88888888788899999988


Q ss_pred             CCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          355 NLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       355 ~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +      +..+..+..+...+.+++|+|++..|+++...++.|..|++...
T Consensus       256 ~------g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          256 G------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             C------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             C------CcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            6      46666676677889999999999877777777789999998764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.30  E-value=3e-10  Score=107.48  Aligned_cols=245  Identities=11%  Similarity=0.090  Sum_probs=148.6

Q ss_pred             EEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC------CCcceeeeecCCC
Q 010997          145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------DNAEFALAMCPTE  208 (496)
Q Consensus       145 ~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~------~~~v~~l~~~p~~  208 (496)
                      .++++| +++.++.++          .++.|.+||..+.            +....+.-..      +..-..++++|||
T Consensus        82 ~va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~------------~v~~~I~v~~g~r~~~g~~P~~~a~spDG  148 (386)
T 3sjl_D           82 NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTL------------LPTADIELPDAPRFLVGTYPWMTSLTPDG  148 (386)
T ss_dssp             EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred             cEEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCC------------eEEEEEECCCccccccCCCCceEEEcCCC
Confidence            399999 666665554          3578999999988            3344433211      1124689999999


Q ss_pred             CceEEecC--CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997          209 PYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       209 ~~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  286 (496)
                      ++|+.+..  ++.|.++|+.+.+..                                        ..+.-. + +  ...
T Consensus       149 k~lyVan~~~~~~VsVID~~t~~vv----------------------------------------~tI~v~-g-~--~~~  184 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLEGKAFK----------------------------------------RMLDVP-D-C--YHI  184 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEE----------------------------------------EEEECC-S-E--EEE
T ss_pred             CEEEEEEcCCCCeEEEEECCCCcEE----------------------------------------EEEECC-C-c--cee
Confidence            98887753  689999999875432                                        222110 1 1  122


Q ss_pred             ccCCCceEEEEcCCCeEEEEEccC-CCccceeeeccC----CCCe-EEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARV-GTSPVIKVEKAH----DADL-HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  360 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~----~~~v-~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~  360 (496)
                      .|.+...|++.+.||.+.+.++.. ++  .......+    ...+ ....|.+.++.++. .+.+|.|.+.|+....   
T Consensus       185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~--v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~---  258 (386)
T 3sjl_D          185 FPTAPDTFFMHCRDGSLAKVAFGTEGT--PEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD---  258 (386)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSC--CEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS---
T ss_pred             ecCCCceeEEECCCCCEEEEECCCCCe--EEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc---
Confidence            355546677888889988888876 34  11111111    1222 22456432665544 5568999999997621   


Q ss_pred             CCCCceEec----------cCCCCEEEEEEcCCCCCEEEEEeC---------CCcEEEEECCCCCcccCCCCCCCCCCCe
Q 010997          361 VGSPINKFE----------GHSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPRTTNYPAG  421 (496)
Q Consensus       361 ~~~~~~~~~----------~h~~~i~~l~~sp~~~~llas~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~  421 (496)
                       ...+..+.          ........++++|++..++++...         .+.|.+.|+.+.               +
T Consensus       259 -~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~---------------k  322 (386)
T 3sjl_D          259 -AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------------E  322 (386)
T ss_dssp             -CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------------C
T ss_pred             -ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC---------------e
Confidence             11222221          012233457789999988876532         257999999885               2


Q ss_pred             eEEEe-cCCCCCcceEEecCCCC-cEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH
Q 010997          422 LFFQH-AGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  483 (496)
Q Consensus       422 ~~~~~-~~h~~~V~~~~~~p~~~-~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~  483 (496)
                      .+... .+  ..+..+++++++. .++++..       .++.|.++|..      +++.+++++
T Consensus       323 v~~~i~vg--~~~~~lavs~D~~~~ly~tn~-------~~~~VsViD~~------t~k~~~~i~  371 (386)
T 3sjl_D          323 RLAKFEMG--HEIDSINVSQDEKPLLYALST-------GDKTLYIHDAE------SGEELRSVN  371 (386)
T ss_dssp             EEEEEEEE--EEECEEEECSSSSCEEEEEET-------TTTEEEEEETT------TCCEEEEEC
T ss_pred             EEEEEECC--CCcceEEECCCCCeEEEEEcC-------CCCeEEEEECC------CCcEEEEec
Confidence            22222 22  2688999999986 5555433       35999999998      555555544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.29  E-value=4e-09  Score=100.86  Aligned_cols=242  Identities=11%  Similarity=-0.016  Sum_probs=148.9

Q ss_pred             EEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecC-------CCCcceeeeecCC
Q 010997          145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-------QDNAEFALAMCPT  207 (496)
Q Consensus       145 ~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h-------~~~~v~~l~~~p~  207 (496)
                      .++++| +++.|+.+.          .++.|.+||..+..            ....+.-.       .. .-..+.|+|+
T Consensus        70 ~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~------------~~~~i~~~~~~~~~~g~-~p~~~~~spD  135 (373)
T 2mad_H           70 NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL------------PIADIELPDAPRFDVGP-YSWMNANTPN  135 (373)
T ss_pred             CeEECC-CCCEEEEEeccccccccCCCCCeEEEEECCCCc------------EEEEEECCCccccccCC-CccceEECCC
Confidence            899999 777777664          36789999998762            22222111       11 2358899999


Q ss_pred             CCceEEecC--CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee-eecCCCceeEE
Q 010997          208 EPYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI-YNGHEDTVEDV  284 (496)
Q Consensus       208 ~~~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l  284 (496)
                      |++|+.+..  +++|.++| .+++..                                        .. +. ..   .++
T Consensus       136 G~~l~v~n~~~~~~v~viD-~t~~~~----------------------------------------~~~i~-~~---~~~  170 (373)
T 2mad_H          136 NADLLFFQFAAGPAVGLVV-QGGSSD----------------------------------------DQLLS-SP---TCY  170 (373)
T ss_pred             CCEEEEEecCCCCeEEEEE-CCCCEE----------------------------------------eEEcC-CC---ceE
Confidence            999988764  57899999 765331                                        11 11 01   124


Q ss_pred             EEccCCCceEEEEcCCCeEEEEEccCCCccceeeec-----cCCCC-eEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          285 TFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-----AHDAD-LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       285 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~-v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      .+.|.+...+++.+.||.+.++|. +++  ......     ....+ .....+.+ ++..++..+..+.+.+.|+.... 
T Consensus       171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~--~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~-  245 (373)
T 2mad_H          171 HIHPGAPSTFYLLCAQGGLAKTDH-AGG--AAGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAG-  245 (373)
T ss_pred             EEEeCCCceEEEEcCCCCEEEEEC-CCc--EEEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEEEeccCCc-
Confidence            556777677888889999999999 665  221110     11122 12345666 34443333467899999997521 


Q ss_pred             CCCCCCceEecc----------CCCCEEEEEEcCCCCCEEEEEeC---------CCcEEEEECCCCCcccCCCCCCCCCC
Q 010997          359 NGVGSPINKFEG----------HSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPRTTNYP  419 (496)
Q Consensus       359 ~~~~~~~~~~~~----------h~~~i~~l~~sp~~~~llas~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~  419 (496)
                         ...+..+..          .......+.++|++..++++...         ++.|.++|+.+.              
T Consensus       246 ---~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~--------------  308 (373)
T 2mad_H          246 ---ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--------------  308 (373)
T ss_pred             ---ceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC--------------
Confidence               111222211          12334458899999888765531         357999999874              


Q ss_pred             CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHH
Q 010997          420 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAE  481 (496)
Q Consensus       420 ~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~  481 (496)
                       +.+..+. -......++|+|++..+++++..      .++.|.+||+.      +++.+.+
T Consensus       309 -~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~------~~~~V~ViD~~------t~~vv~~  356 (373)
T 2mad_H          309 -QTSSQIS-LGHDVDAISVAQDGGPDLYALSA------GTEVLHIYDAG------AGDQDQS  356 (373)
T ss_pred             -EEEEEEE-CCCCcCeEEECCCCCeEEEEEcC------CCCeEEEEECC------CCCEEee
Confidence             3333332 12357899999999845554332      25999999998      5555555

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.28  E-value=1.2e-10  Score=122.50  Aligned_cols=223  Identities=11%  Similarity=-0.017  Sum_probs=136.4

Q ss_pred             cceeeeecCCCCceEEecCC-----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCee
Q 010997          198 AEFALAMCPTEPYVLSGGKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG  272 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (496)
                      .+.+++|+|||++|+.++.+     ..|++||+.++...                                        .
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~----------------------------------------~  203 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL----------------------------------------A  203 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE----------------------------------------E
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC----------------------------------------C
Confidence            57789999999998876543     46999999865321                                        1


Q ss_pred             eeecCCCceeEEEEccCCCceEEEEcCCC--------------eEEEEEccCCCccceeeec--cCCCCeEEEEecCCCC
Q 010997          273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDS--------------CLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDD  336 (496)
Q Consensus       273 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~  336 (496)
                       ...+...+..++|+|+ ..++++ +.++              .|.+|++.++.......+.  .+...+..+.|+| ++
T Consensus       204 -~~~~~~~~~~~~wspD-~~l~~~-~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG  279 (741)
T 1yr2_A          204 -DELKWVKFSGLAWLGN-DALLYS-RFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-DG  279 (741)
T ss_dssp             -EEEEEEESCCCEESTT-SEEEEE-ECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TS
T ss_pred             -ccCCCceeccEEEECC-CEEEEE-EecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-CC
Confidence             1111112357899999 554444 4433              3889998766522122222  2334588999999 89


Q ss_pred             cEEEEEcCCC-----cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEECCCCCcc
Q 010997          337 NLILTGSADN-----SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVGKK  408 (496)
Q Consensus       337 ~~l~sgs~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~---dg~i~iwd~~~~~~~  408 (496)
                      .+|+..+.++     .|.+||+.+..    ..+...+..+...+.... +|++..|++....   ++.|.+||+....  
T Consensus       280 ~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~--  352 (741)
T 1yr2_A          280 RWVVITSSEGTDPVNTVHVARVTNGK----IGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST--  352 (741)
T ss_dssp             CEEEEEEECTTCSCCEEEEEEEETTE----ECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS--
T ss_pred             CEEEEEEEccCCCcceEEEEECCCCC----CcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc--
Confidence            8888776543     89999998610    021555655655555554 4888876544432   3459999987631  


Q ss_pred             cCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHh-ccc
Q 010997          409 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEK-FKA  487 (496)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~-h~~  487 (496)
                                 .........+...+.+++|.  +..++++...|       +..+||.+..     .+..+..+.. +.+
T Consensus       353 -----------~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~d-------g~~~l~~~~~-----~g~~~~~l~~~~~~  407 (741)
T 1yr2_A          353 -----------PRFDTVVPESKDNLESVGIA--GNRLFASYIHD-------AKSQVLAFDL-----DGKPAGAVSLPGIG  407 (741)
T ss_dssp             -----------CEEEEEECCCSSEEEEEEEE--BTEEEEEEEET-------TEEEEEEEET-----TSCEEEECBCSSSC
T ss_pred             -----------cccEEEecCCCCeEEEEEEE--CCEEEEEEEEC-------CEEEEEEEeC-----CCCceeeccCCCCe
Confidence                       01122234445556678887  55677777665       8877776641     1222333433 255


Q ss_pred             eEEEeccCC
Q 010997          488 HVISCTSKP  496 (496)
Q Consensus       488 ~v~~~~~sP  496 (496)
                      .|..++++|
T Consensus       408 ~v~~~~~s~  416 (741)
T 1yr2_A          408 SASGLSGRP  416 (741)
T ss_dssp             EEEEEECCB
T ss_pred             EEEEeecCC
Confidence            677777765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.28  E-value=2.3e-10  Score=106.21  Aligned_cols=222  Identities=10%  Similarity=0.098  Sum_probs=142.0

Q ss_pred             ceeeeecCC-CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          199 EFALAMCPT-EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       199 v~~l~~~p~-~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      ..+..|+|+ +.++++...++.|..||..++..                                         ..+ ..
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------------------------------------~~~-~~   52 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------------------------------------QRV-TM   52 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------------------------------------EEE-EC
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------------------------------------EEE-eC
Confidence            458899996 45666777889999999875422                                         111 23


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc--CCCCeEEEEecCCCCcEEEEEcCC---------C
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HDADLHCVDWNPLDDNLILTGSAD---------N  346 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~i~~sp~~~~~l~sgs~d---------g  346 (496)
                      ...+.++++++++ .++++ . ++.|.+||..+++...+.....  ....++.++++| +++++++....         .
T Consensus        53 ~~~~~~i~~~~dG-~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~  128 (297)
T 3g4e_A           53 DAPVSSVALRQSG-GYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERH  128 (297)
T ss_dssp             SSCEEEEEEBTTS-SEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTT
T ss_pred             CCceEEEEECCCC-CEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCC
Confidence            4578999999998 54444 3 5689999988765211111111  124578999999 88876654321         2


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC-CCCcccCCCCCCCCCCCeeEEE
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-KVGKKVEQGPRTTNYPAGLFFQ  425 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~  425 (496)
                      .-.||.+..      ...+..+..+......++|+|+++.++++.+.++.|.+||+. ..+...         ....+..
T Consensus       129 ~~~l~~~d~------~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~---------~~~~~~~  193 (297)
T 3g4e_A          129 QGALYSLFP------DHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS---------NRRSVYK  193 (297)
T ss_dssp             CEEEEEECT------TSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE---------EEEEEEE
T ss_pred             CcEEEEEEC------CCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc---------CcEEEEE
Confidence            345555443      112223333445578999999999887788878999999974 211110         0123333


Q ss_pred             ecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          426 HAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       426 ~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                      +..+......+++.++|. +.++...       ++.|.+|++.      +++.+..+..+...+++++|.
T Consensus       194 ~~~~~~~p~g~~~d~~G~-lwva~~~-------~~~v~~~d~~------tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          194 LEKEEQIPDGMCIDAEGK-LWVACYN-------GGRVIRLDPV------TGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             CCGGGCEEEEEEEBTTSC-EEEEEET-------TTEEEEECTT------TCCEEEEEECSSSBEEEEEEE
T ss_pred             CCCCCCCCCeeEECCCCC-EEEEEcC-------CCEEEEEcCC------CceEEEEEECCCCCceEEEEe
Confidence            333445678899999885 5554433       3789999987      466666666666678888885

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.24  E-value=4.4e-09  Score=97.88  Aligned_cols=230  Identities=9%  Similarity=0.070  Sum_probs=146.0

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .+...........|+|+...+++++..++.|..|+....              ...+..+.. .+.+++++++|+++++.
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~--------------~~~~~~~~~-~~~gl~~d~dG~l~v~~  103 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT--------------VDVLLDATA-FTNGNAVDAQQRLVHCE  103 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC--------------EEEEEESCS-CEEEEEECTTSCEEEEE
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC--------------EEEEeCCCC-ccceeeECCCCCEEEEE
Confidence            344455667789999944447888888999999987322              123333444 47899999999876666


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-CCCceeEEEEccCCCce
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-HEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~  293 (496)
                      ..++.|.+|+.+ +......                                     ....+ ....++++++.++| .+
T Consensus       104 ~~~~~v~~~~~~-g~~~~~~-------------------------------------~~~~~~~~~~~~~i~~d~dG-~l  144 (305)
T 3dr2_A          104 HGRRAITRSDAD-GQAHLLV-------------------------------------GRYAGKRLNSPNDLIVARDG-AI  144 (305)
T ss_dssp             TTTTEEEEECTT-SCEEEEE-------------------------------------CEETTEECSCCCCEEECTTS-CE
T ss_pred             CCCCEEEEECCC-CCEEEEE-------------------------------------eccCCCccCCCCCEEECCCC-CE
Confidence            666889999875 2211000                                     00000 11346789999998 66


Q ss_pred             EEE----EcC-------------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC------CcEEE
Q 010997          294 FCS----VGD-------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD------NSVRM  350 (496)
Q Consensus       294 l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d------g~i~i  350 (496)
                      +++    |..             .+.|..||..+++  .....  .....+.++|+| ++..|+.+...      +.|.+
T Consensus       145 ~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--~~~~~--~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~  219 (305)
T 3dr2_A          145 WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--LQRMA--DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITA  219 (305)
T ss_dssp             EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--CEEEE--EESSEEEEEECT-TSSEEEEEECCC---CCCEEEE
T ss_pred             EEeCcCCCccccccccccccccCCCeEEEEcCCCCc--EEEEe--cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEE
Confidence            665    332             2567777776665  22222  345678999999 88877666554      78999


Q ss_pred             EeCCCCCCCCCCCCce---Ee-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997          351 FDRRNLTSNGVGSPIN---KF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  426 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~---~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  426 (496)
                      ||+..      .. +.   .+ .........++++++|. |++ +..+ .|.+|+...                ..+...
T Consensus       220 ~~~~~------~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv-~~~~-gv~~~~~~g----------------~~~~~~  273 (305)
T 3dr2_A          220 FAWRD------GA-LHDRRHFASVPDGLPDGFCVDRGGW-LWS-SSGT-GVCVFDSDG----------------QLLGHI  273 (305)
T ss_dssp             EEEET------TE-EEEEEEEECCSSSCCCSEEECTTSC-EEE-CCSS-EEEEECTTS----------------CEEEEE
T ss_pred             EEecC------CC-ccCCeEEEECCCCCCCeEEECCCCC-EEE-ecCC-cEEEECCCC----------------CEEEEE
Confidence            99875      22 11   11 11234456789999998 554 4444 499999753                223333


Q ss_pred             cCCCCCcceEEecCCCCcEEEEec
Q 010997          427 AGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       427 ~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      ..+. .+.+++|.+++..|+++++
T Consensus       274 ~~~~-~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          274 PTPG-TASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             ECSS-CCCEEEECTTSCEEEEEET
T ss_pred             ECCC-ceeEEEEeCCCCEEEEEcC
Confidence            3333 5889999998888887654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.23  E-value=3.3e-10  Score=103.72  Aligned_cols=182  Identities=8%  Similarity=-0.003  Sum_probs=129.1

Q ss_pred             CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC-CceeEEE
Q 010997          207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVT  285 (496)
Q Consensus       207 ~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~  285 (496)
                      .+++|++++.|+.|.+||.++++..                                        ..+..+. ..+.++.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~----------------------------------------w~~~~~~~~~~~~~~   43 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIV----------------------------------------WEYPLEKGWECNSVA   43 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEE----------------------------------------EEEECCTTCCCCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEE----------------------------------------EEeCCCccCCCcCeE
Confidence            3578999999999999998766543                                        3333343 4678899


Q ss_pred             EccCCCceEEEEcCCCeEEEEEccCCCccceeeeccC-CCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCC
Q 010997          286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~  363 (496)
                      +.|+| ++++  +.++.|..||. +++  .+..+..+ ...+.++.+.| +++++++.+. ++.|..+|..       ++
T Consensus        44 ~~pdG-~ilv--s~~~~V~~~d~-~G~--~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~-------Gk  109 (276)
T 3no2_A           44 ATKAG-EILF--SYSKGAKMITR-DGR--ELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNMK-------GE  109 (276)
T ss_dssp             ECTTS-CEEE--ECBSEEEEECT-TSC--EEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECTT-------SC
T ss_pred             ECCCC-CEEE--eCCCCEEEECC-CCC--EEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeCC-------CC
Confidence            99998 6777  35788999998 666  45555443 35788999999 8999998877 7788888753       56


Q ss_pred             CceEecc------CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEE
Q 010997          364 PINKFEG------HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFH  437 (496)
Q Consensus       364 ~~~~~~~------h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  437 (496)
                      .+.++..      +......+++.++|. ++++...++.|.+||.. +               +.+..+... ..+.++.
T Consensus       110 ~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G---------------~~~w~~~~~-~~~~~~~  171 (276)
T 3no2_A          110 VLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN-G---------------QLLNSVKLS-GTPFSSA  171 (276)
T ss_dssp             EEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT-S---------------CEEEEEECS-SCCCEEE
T ss_pred             EEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC-C---------------CEEEEEECC-CCcccee
Confidence            6655541      222345667889998 56788889999999987 4               345555443 3456778


Q ss_pred             ecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          438 WNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       438 ~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ..+++..++ +++       .++.|..+|..
T Consensus       172 ~~~~g~~~v-~~~-------~~~~v~~~d~~  194 (276)
T 3no2_A          172 FLDNGDCLV-ACG-------DAHCFVQLNLE  194 (276)
T ss_dssp             ECTTSCEEE-ECB-------TTSEEEEECTT
T ss_pred             EcCCCCEEE-EeC-------CCCeEEEEeCc
Confidence            888776554 332       34788888887

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.16  E-value=3.4e-09  Score=102.81  Aligned_cols=192  Identities=9%  Similarity=0.054  Sum_probs=127.9

Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  278 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  278 (496)
                      ...|+|+++++++++...++.|++||..++...                                         .+....
T Consensus       133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------------------------------------~~~~~~  171 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------------------------------------TVHPGF  171 (409)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------------------------------------EEEETC
T ss_pred             ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------------------------------------EeeccC
Confidence            578999999998888888899999998754321                                         111112


Q ss_pred             CceeEEEEccCCCceEEEEcCCC--eEEEEEccCCCccceeee----ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDDS--CLILWDARVGTSPVIKVE----KAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  352 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~----~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd  352 (496)
                      .... ++|++++ ..|+++..++  .|.++|......  ....    ......+.+++++| ++..|+.+..++.|..||
T Consensus       172 ~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p-~~g~lyv~d~~~~I~~~d  246 (409)
T 3hrp_A          172 KGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDE-TEEWLYFVDSNKNFGRFN  246 (409)
T ss_dssp             CBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECT-TSSEEEEECTTCEEEEEE
T ss_pred             CCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCce--eEEeeeccchhcCCcEEEEEeC-CCCeEEEEECCCcEEEEE
Confidence            2233 8999998 5677766655  899998876552  2222    22456788999999 444555577789999999


Q ss_pred             CCCCCCCCCCCCceEe-----ccCCCCE-E-EEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997          353 RRNLTSNGVGSPINKF-----EGHSAAV-L-CVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  425 (496)
Q Consensus       353 ~~~~~~~~~~~~~~~~-----~~h~~~i-~-~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  425 (496)
                      ...      +. ...+     .++...- . .++|+|++..|+++...++.|+.|+....                 +..
T Consensus       247 ~~~------~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-----------------~~~  302 (409)
T 3hrp_A          247 VKT------QE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-----------------CEW  302 (409)
T ss_dssp             TTT------CC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----------------EEE
T ss_pred             CCC------CC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-----------------EEE
Confidence            886      32 2222     1222222 3 99999976668888888899999987642                 011


Q ss_pred             ecCC---------------CCCcceEEecCCCCcEEEEec-CCCCCCCCCCeEEEeecC
Q 010997          426 HAGH---------------RDKVVDFHWNASDPWTVVSVS-DDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       426 ~~~h---------------~~~V~~~~~~p~~~~l~~s~s-~d~~sgg~Dg~i~iw~~~  468 (496)
                      ..++               -.....++++|++. ++++-+ .       ++.|+.|++.
T Consensus       303 ~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~-------~~~I~~~~~~  353 (409)
T 3hrp_A          303 FCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFK-------GYCLRKLDIL  353 (409)
T ss_dssp             EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTT-------TCEEEEEETT
T ss_pred             EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCC-------CCEEEEEECC
Confidence            1111               13467899999887 565543 3       4899999965

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.16  E-value=8.1e-10  Score=104.66  Aligned_cols=252  Identities=11%  Similarity=-0.025  Sum_probs=150.2

Q ss_pred             EEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC------CCcceeeeecCCC
Q 010997          145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ------DNAEFALAMCPTE  208 (496)
Q Consensus       145 ~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~------~~~v~~l~~~p~~  208 (496)
                      .+.++| +++.++.+.          .++.|.+||+.+.            +....+..+.      ......++++|||
T Consensus        69 ~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~------------~vv~~I~v~~~~~~~~g~~P~~ia~SpDG  135 (368)
T 1mda_H           69 LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------LPIADIELPDAPRFSVGPRVHIIGNCASS  135 (368)
T ss_dssp             EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTC------------CEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred             ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCC------------CEEEEEECCCccccccCCCcceEEEcCCC
Confidence            799999 666666664          3678999999998            4455554320      0124689999999


Q ss_pred             CceEEecC--CCcEEE--EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEE
Q 010997          209 PYVLSGGK--DKSVVL--WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  284 (496)
Q Consensus       209 ~~l~sg~~--Dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  284 (496)
                      ++|+.+..  +..|.+  +|..+ .                                          ..+.. .+   ++
T Consensus       136 k~lyVan~~~~~~v~V~~iD~~t-v------------------------------------------~~i~v-~~---~~  168 (368)
T 1mda_H          136 ACLLFFLFGSSAAAGLSVPGASD-D------------------------------------------QLTKS-AS---CF  168 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEE-E------------------------------------------EEEEC-SS---CC
T ss_pred             CEEEEEccCCCCeEEEEEEchhh-c------------------------------------------eEEEC-CC---ce
Confidence            99988864  467888  88864 1                                          11110 00   11


Q ss_pred             EEccCCCceEEEEcCCCeEEEEEccC-----CCccce--eeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997          285 TFCPSSAQEFCSVGDDSCLILWDARV-----GTSPVI--KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  357 (496)
Q Consensus       285 ~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~--~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~  357 (496)
                      .+.|++...+++.+.||.+.+.|+.+     ++....  ........+.   . .+ ++..++..+. +.|.+.|+....
T Consensus       169 ~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~-~~~~~~~vs~-~~V~viD~~~~~  242 (368)
T 1mda_H          169 HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN-YPGMLVWAVA-SSILQGDIPAAG  242 (368)
T ss_dssp             CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET-TTTEEEECBS-SCCEEEECCSSC
T ss_pred             EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc-cCCEEEEEcC-CEEEEEECCCCc
Confidence            23456656677778888888888876     221000  0011112233   3 55 4455555555 999999986411


Q ss_pred             CCCCCCCceEecc-------C---CCCEEEEEEcCCCCCEEEEEe-C-------CCcEEEEECCCCCcccCCCCCCCCCC
Q 010997          358 SNGVGSPINKFEG-------H---SAAVLCVQWSPDKSSVFGSSA-E-------DGLLNIWDYEKVGKKVEQGPRTTNYP  419 (496)
Q Consensus       358 ~~~~~~~~~~~~~-------h---~~~i~~l~~sp~~~~llas~~-~-------dg~i~iwd~~~~~~~~~~~~~~~~~~  419 (496)
                          ...+..+..       +   ......++|+|++.+++++.. .       ++.+.++|+.+.              
T Consensus       243 ----~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~--------------  304 (368)
T 1mda_H          243 ----ATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG--------------  304 (368)
T ss_dssp             ----CEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC--------------
T ss_pred             ----ceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC--------------
Confidence                111111110       0   111122689999998886644 2       235669999885              


Q ss_pred             CeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          420 AGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       420 ~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                       +.+..+... .....++|+|++..+++++..      .++.|.++|+.      +.+.++++.....+ ..++++
T Consensus       305 -~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~------~~~~VsVID~~------t~kvv~~I~vg~~P-~~i~~~  365 (368)
T 1mda_H          305 -QTSGPISNG-HDSDAIIAAQDGASDNYANSA------GTEVLDIYDAA------SDQDQSSVELDKGP-ESLSVQ  365 (368)
T ss_dssp             -CEEECCEEE-EEECEEEECCSSSCEEEEEET------TTTEEEEEESS------SCEEEEECCCCSCC-CEEECC
T ss_pred             -eEEEEEECC-CCcceEEECCCCCEEEEEccC------CCCeEEEEECC------CCcEEEEEECCCCC-CEEEee
Confidence             222222111 147899999999888876551      24999999999      66777666655443 444443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.15  E-value=4.4e-09  Score=101.31  Aligned_cols=245  Identities=10%  Similarity=0.025  Sum_probs=147.9

Q ss_pred             EEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecC------CCCcceeeeecCCC
Q 010997          145 RIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH------QDNAEFALAMCPTE  208 (496)
Q Consensus       145 ~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h------~~~~v~~l~~~p~~  208 (496)
                      .++++| +++.|+.+.          .++.|.++|..+.            +....+.-.      ....-..+.++|+|
T Consensus       122 gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~------------~vv~~I~v~g~~r~~~g~~P~~~~~spDG  188 (426)
T 3c75_H          122 HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTF------------LPIADIELPDAPRFLVGTYQWMNALTPDN  188 (426)
T ss_dssp             EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGSEECTTS
T ss_pred             ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCC------------cEEEEEECCCccccccCCCcceEEEcCCC
Confidence            799999 666665554          3678999999988            333333211      01124689999999


Q ss_pred             CceEEecC--CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997          209 PYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       209 ~~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  286 (496)
                      ++|+.+..  +++|.+.|+.+.+..                                        ..+.--  .  +...
T Consensus       189 k~lyV~n~~~~~~VsVID~~t~kvv----------------------------------------~~I~v~--g--~~~~  224 (426)
T 3c75_H          189 KNLLFYQFSPAPAVGVVDLEGKTFD----------------------------------------RMLDVP--D--CYHI  224 (426)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEE----------------------------------------EEEECC--S--EEEE
T ss_pred             CEEEEEecCCCCeEEEEECCCCeEE----------------------------------------EEEEcC--C--ceee
Confidence            99888764  678999999865432                                        111110  0  1234


Q ss_pred             ccCCCceEEEEcCCCeEEEEEccCCCccceee----eccCCCC-eEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKV----EKAHDAD-LHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  361 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~-v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~  361 (496)
                      .|++...+++.+.||.+.+.+...++  ....    +.....+ ...+.+.+ ++..++..+..+.|.+.|+....    
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~~~~~--v~~~~~~~~~v~~~p~~~~~~~~~-dg~~~~~~s~~g~V~ViD~~~~~----  297 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDFADGE--TKVTNTEVFHTEDELLINHPAFSL-RSGRLVWPTYTGKIFQADLTAEG----  297 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEECCTTC--CEEEECCCCSCTTSCBCSCCEECT-TTCEEEEEBTTSEEEEEEECSSC----
T ss_pred             ccCCCcEEEEEcCCCCEEEEECCCCc--EEEEeeeeeccCCCceeeEeeecC-CCCEEEEEeCCCcEEEEeccCCc----
Confidence            45555667777788888888884443  2211    1111111 12356788 66666666778999999986511    


Q ss_pred             CCCceEec----------cCCCCEEEEEEcCCCCCEEEEEeC---------CCcEEEEECCCCCcccCCCCCCCCCCCee
Q 010997          362 GSPINKFE----------GHSAAVLCVQWSPDKSSVFGSSAE---------DGLLNIWDYEKVGKKVEQGPRTTNYPAGL  422 (496)
Q Consensus       362 ~~~~~~~~----------~h~~~i~~l~~sp~~~~llas~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  422 (496)
                      ...+..+.          ........++++|++.+++++...         ++.|.+.|+.+.               +.
T Consensus       298 ~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---------------kv  362 (426)
T 3c75_H          298 ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---------------ER  362 (426)
T ss_dssp             EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------------CE
T ss_pred             eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---------------eE
Confidence            00111110          001122236899999888876531         357999999885               22


Q ss_pred             EEEecCCCCCcceEEecCCCC-cEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH
Q 010997          423 FFQHAGHRDKVVDFHWNASDP-WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  482 (496)
Q Consensus       423 ~~~~~~h~~~V~~~~~~p~~~-~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l  482 (496)
                      +..+.. ......++|+|++. .++++...       ++.|.|+|+.      +.+.++++
T Consensus       363 v~~I~v-g~~P~gia~spDg~~~lyv~n~~-------s~~VsVID~~------t~kvv~tI  409 (426)
T 3c75_H          363 INKIEL-GHEIDSINVSQDAEPLLYALSAG-------TQTLHIYDAA------TGEELRSV  409 (426)
T ss_dssp             EEEEEE-EEEECEEEECCSSSCEEEEEETT-------TTEEEEEETT------TCCEEEEE
T ss_pred             EEEEEC-CCCcCeEEEccCCCEEEEEEcCC-------CCeEEEEECC------CCCEEEEe
Confidence            322221 12478999999998 55543323       4999999998      45555443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.11  E-value=1.1e-09  Score=114.12  Aligned_cols=201  Identities=12%  Similarity=0.111  Sum_probs=127.6

Q ss_pred             cceeeeecCCCCceEE-----ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCee
Q 010997          198 AEFALAMCPTEPYVLS-----GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG  272 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~s-----g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (496)
                      .+.+++|+|||++||-     |+.+..|++||+.++....                                       .
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~---------------------------------------~  170 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE---------------------------------------T  170 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE---------------------------------------E
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc---------------------------------------c
Confidence            5778899999998873     3334689999998754210                                       0


Q ss_pred             eeecCCCceeEEEEccCCCceEEEEcCCC-------------eEEEEEccCCCccceeee--cc-CCCCeEEEEecCCCC
Q 010997          273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDS-------------CLILWDARVGTSPVIKVE--KA-HDADLHCVDWNPLDD  336 (496)
Q Consensus       273 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-------------~i~iwd~~~~~~~~~~~~--~~-~~~~v~~i~~sp~~~  336 (496)
                      .+..  .....++|+ ++ ..|+.++.+.             .|++|++.+........+  .. |...+..+.|+| ++
T Consensus       171 ~~~~--~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg  245 (693)
T 3iuj_A          171 PLKD--VKFSGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DD  245 (693)
T ss_dssp             EEEE--EESCCCEEE-TT-TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TS
T ss_pred             ccCC--ceeccEEEe-CC-CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CC
Confidence            1111  113577899 88 5566665553             499999877653222222  23 445678999999 88


Q ss_pred             cEEEEEcC----CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC---CcEEEEECCCCCccc
Q 010997          337 NLILTGSA----DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED---GLLNIWDYEKVGKKV  409 (496)
Q Consensus       337 ~~l~sgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d---g~i~iwd~~~~~~~~  409 (496)
                      .+|+....    +..|.++|+....     .....+..+....... |++++..+++.+..+   +.|..+|+...... 
T Consensus       246 ~~l~~~~~~~~~~~~i~~~d~~~~~-----~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-  318 (693)
T 3iuj_A          246 RFLLISAANSTSGNRLYVKDLSQEN-----APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-  318 (693)
T ss_dssp             CEEEEEEESSSSCCEEEEEETTSTT-----CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-
T ss_pred             CEEEEEEccCCCCcEEEEEECCCCC-----CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-
Confidence            87754332    3589999998722     2455666666666555 677777777666554   67999998874210 


Q ss_pred             CCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          410 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                                  ....+..|...+.  .|++++..++++..++     .-..|++|++.
T Consensus       319 ------------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~-----g~~~l~~~d~~  358 (693)
T 3iuj_A          319 ------------HWRDLIPERQQVL--TVHSGSGYLFAEYMVD-----ATARVEQFDYE  358 (693)
T ss_dssp             ------------GCEEEECCCSSCE--EEEEETTEEEEEEEET-----TEEEEEEECTT
T ss_pred             ------------ccEEEecCCCCEE--EEEEECCEEEEEEEEC-----CeeEEEEEECC
Confidence                        0112334555554  8888888888766654     01268888876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.09  E-value=3.6e-08  Score=92.58  Aligned_cols=196  Identities=12%  Similarity=0.154  Sum_probs=124.8

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe-cCCCCcceeeeecCCCCceEEecC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      .+...|.++++.| +++++++. .+ .|.+||..++....          ..... +.....+..++++|+|+++++...
T Consensus        87 ~~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~----------~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~  153 (326)
T 2ghs_A           87 ALPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTL----------HAELESDLPGNRSNDGRMHPSGALWIGTMG  153 (326)
T ss_dssp             ECSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEE----------EECSSTTCTTEEEEEEEECTTSCEEEEEEE
T ss_pred             ECCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEE----------EeeCCCCCCCCCCCCEEECCCCCEEEEeCC
Confidence            3456799999999 77777654 44 49999987762110          00000 111224788999999986665432


Q ss_pred             C----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          217 D----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       217 D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +    +...||.+.++..                                         ..+..+......++|+|++..
T Consensus       154 ~~~~~~~~~l~~~~~g~~-----------------------------------------~~~~~~~~~~~~i~~s~dg~~  192 (326)
T 2ghs_A          154 RKAETGAGSIYHVAKGKV-----------------------------------------TKLFADISIPNSICFSPDGTT  192 (326)
T ss_dssp             TTCCTTCEEEEEEETTEE-----------------------------------------EEEEEEESSEEEEEECTTSCE
T ss_pred             CcCCCCceEEEEEeCCcE-----------------------------------------EEeeCCCcccCCeEEcCCCCE
Confidence            1    2334444332211                                         111122234678999999954


Q ss_pred             eEEEEcCCCeEEEEEcc--CC-Ccc---ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce
Q 010997          293 EFCSVGDDSCLILWDAR--VG-TSP---VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN  366 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~--~~-~~~---~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~  366 (496)
                      ++++.+.++.|.+||+.  ++ ...   ....+......+..+++++ ++++.++...++.|..||..       +..+.
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~-------g~~~~  264 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-------GNHIA  264 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-------CCEEE
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCC-------CCEEE
Confidence            55666778999999986  44 211   1112222345678899999 78877777677889999983       46677


Q ss_pred             EeccCCCCEEEEEEc-CCCCCEEEEEeCCC
Q 010997          367 KFEGHSAAVLCVQWS-PDKSSVFGSSAEDG  395 (496)
Q Consensus       367 ~~~~h~~~i~~l~~s-p~~~~llas~~~dg  395 (496)
                      .+..+...+++++|+ |++..|+++...++
T Consensus       265 ~i~~~~~~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          265 RYEVPGKQTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             EEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred             EEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence            777777789999998 88887776666553

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.08  E-value=7.4e-09  Score=98.08  Aligned_cols=249  Identities=8%  Similarity=0.048  Sum_probs=144.2

Q ss_pred             CceeEEEecCCCCcEEEEEe--CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC--
Q 010997          141 GEVNRIRELPQNTKIVATHT--DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK--  216 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~--  216 (496)
                      ..+..++++| +++++++..  .++.++||.+..+. .... ..  ..  ....+|.. .+.+++++++++++++-..  
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~-p~--~~--~~~~~~~~-~p~gv~~d~~g~L~v~D~g~~   88 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDG-LIPF-PP--QS--GNAIITFD-TVLGIKSDGNGIVWMLDNGNQ   88 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTE-EEES-CC--CC--SSCCCCCS-CEEEEEECSSSEEEEEECHHH
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCC-eecC-CC--cc--cCccccee-EeeEEEEcCCCcEEEEcCCCC
Confidence            6789999999 788888864  23435666654321 1100 00  00  01123334 4789999999886665433  


Q ss_pred             ---CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          217 ---DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       217 ---Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                         ++.|.+||+.++.........                                  .....+...+.++++++++...
T Consensus        89 ~~~~~~i~~~d~~tg~~~~~~~~~----------------------------------~~~~~~~~~~~~v~vd~~~g~~  134 (343)
T 2qe8_A           89 SKSVPKLVAWDTLNNQLSRVIYLP----------------------------------PPITLSNSFVNDLAVDLIHNFV  134 (343)
T ss_dssp             HTSCCEEEEEETTTTEEEEEEECC----------------------------------TTTSCTTCCCCEEEEETTTTEE
T ss_pred             cCCCCeEEEEECCCCeEEEEEECC----------------------------------hhhcccccccceEEEecCCCEE
Confidence               579999999865421111000                                  0000123456889999865466


Q ss_pred             EEEEc---CCCeEEEEEccCCCccceeeeccC-----------------------------CCCeEEEEecCCCCcEEEE
Q 010997          294 FCSVG---DDSCLILWDARVGTSPVIKVEKAH-----------------------------DADLHCVDWNPLDDNLILT  341 (496)
Q Consensus       294 l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~-----------------------------~~~v~~i~~sp~~~~~l~s  341 (496)
                      +++-.   .++.|.+||+.+++  .......|                             ...++.|+|+| ++..|+.
T Consensus       135 yvtd~~~~~~~~i~v~d~~~g~--~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~  211 (343)
T 2qe8_A          135 YISDPAPDDKAALIRVDLQTGL--AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYL  211 (343)
T ss_dssp             EEEECCSGGGCEEEEEETTTCC--EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEE
T ss_pred             EEEcCccCCCCeEEEEECCCCC--EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEE
Confidence            67766   68899999998665  22222111                             12468899999 8887777


Q ss_pred             EcCCC-cEEEEeCCCCCCCCC--CCCce--EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCC
Q 010997          342 GSADN-SVRMFDRRNLTSNGV--GSPIN--KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  416 (496)
Q Consensus       342 gs~dg-~i~iwd~~~~~~~~~--~~~~~--~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~  416 (496)
                      +..++ .|..++.........  .....  ...++......++++++|. ++++...++.|.+||.... +         
T Consensus       212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G-~---------  280 (343)
T 2qe8_A          212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR-A---------  280 (343)
T ss_dssp             EESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT-E---------
T ss_pred             EeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC-C---------
Confidence            76665 555555321110000  00000  1123444567899999986 7878888999999998332 1         


Q ss_pred             CCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          417 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       417 ~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                         ...+.. ..+...+.+++|.+++. ++++.+
T Consensus       281 ---~~~~~~-~~~~~~p~~va~~~~g~-l~v~~~  309 (343)
T 2qe8_A          281 ---YKLLVT-DEKLSWTDSFNFGSDGY-LYFDCN  309 (343)
T ss_dssp             ---EEEEEE-CGGGSCEEEEEECTTSC-EEEEEC
T ss_pred             ---EEEEEE-CCceecCCeeEECCCCc-EEEEeC
Confidence               012221 11244678999999765 555444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.06  E-value=6.2e-08  Score=92.31  Aligned_cols=234  Identities=11%  Similarity=0.043  Sum_probs=140.2

Q ss_pred             CCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe------cCCCCcceeeeecCCCCceEEecCC------
Q 010997          150 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT------GHQDNAEFALAMCPTEPYVLSGGKD------  217 (496)
Q Consensus       150 p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~------~h~~~~v~~l~~~p~~~~l~sg~~D------  217 (496)
                      +....++++|..++.|+|+|+.+.+...        +...+++      ......-..+...|+| .++++..+      
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p--------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~  163 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREP--------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGP  163 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSC--------EEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCc--------eeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCC
Confidence            5455567778889999999997663222        2222331      0000012456778999 77776655      


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      |.|.+.|.++..........                                     .....--.++.|+|++ +.+++.
T Consensus       164 g~v~vlD~~T~~v~~~~~~~-------------------------------------~~~~~~~Yd~~~~p~~-~~mvsS  205 (462)
T 2ece_A          164 GGILMLDHYSFEPLGKWEID-------------------------------------RGDQYLAYDFWWNLPN-EVLVSS  205 (462)
T ss_dssp             CEEEEECTTTCCEEEECCSB-------------------------------------CTTCCCCCCEEEETTT-TEEEEC
T ss_pred             CeEEEEECCCCeEEEEEccC-------------------------------------CCCccccceEEECCCC-CEEEEc
Confidence            78999998765433221110                                     0011223468889998 566666


Q ss_pred             c-------------------CCCeEEEEEccCCCccceeeeccC--CCCeEEEEe--cCCCCcEEEEEc------CCCcE
Q 010997          298 G-------------------DDSCLILWDARVGTSPVIKVEKAH--DADLHCVDW--NPLDDNLILTGS------ADNSV  348 (496)
Q Consensus       298 ~-------------------~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~i~~--sp~~~~~l~sgs------~dg~i  348 (496)
                      .                   .+.+|.+||+.+++  ....+...  ......|.|  +| ++.++.+++      .+++|
T Consensus       206 ~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k--~~~tI~vg~~g~~P~~i~f~~~P-dg~~aYV~~e~~~~~Lss~V  282 (462)
T 2ece_A          206 EWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK--RIHSLTLGEENRMALELRPLHDP-TKLMGFINMVVSLKDLSSSI  282 (462)
T ss_dssp             BCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE--EEEEEESCTTEEEEEEEEECSST-TCCEEEEEEEEETTTCCEEE
T ss_pred             cCcCccccccccchhhhhhccCCEEEEEECCCCc--EeeEEecCCCCCccceeEeeECC-CCCEEEEEEeeeccCCCceE
Confidence            3                   47899999998765  34333321  123445544  99 777766655      56788


Q ss_pred             EEEeCCCCCCCCCCCCceEe--c----------------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccC
Q 010997          349 RMFDRRNLTSNGVGSPINKF--E----------------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVE  410 (496)
Q Consensus       349 ~iwd~~~~~~~~~~~~~~~~--~----------------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~  410 (496)
                      .+|......    ......+  .                +-......|.+||++++|+++.-..+.|.+||+...+.   
T Consensus       283 ~v~~~d~g~----~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~---  355 (462)
T 2ece_A          283 WLWFYEDGK----WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFK---  355 (462)
T ss_dssp             EEEEEETTE----EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTS---
T ss_pred             EEEEecCCc----eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCC---
Confidence            766554200    1111111  0                00245788999999999998888899999999974311   


Q ss_pred             CCCCCCCCCCeeEEEe-cC-------C------CCCcceEEecCCCCcEEEEe
Q 010997          411 QGPRTTNYPAGLFFQH-AG-------H------RDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       411 ~~~~~~~~~~~~~~~~-~~-------h------~~~V~~~~~~p~~~~l~~s~  449 (496)
                               ..++... .|       |      ...-..++++|+|++++++.
T Consensus       356 ---------~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          356 ---------PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ---------CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ---------cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                     1222222 11       1      01357899999999999876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.02  E-value=1.6e-07  Score=89.78  Aligned_cols=269  Identities=7%  Similarity=-0.042  Sum_probs=148.8

Q ss_pred             CCcEEEEEeC--CC---cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec----------C
Q 010997          152 NTKIVATHTD--SP---DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------K  216 (496)
Q Consensus       152 ~~~~lat~~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~----------~  216 (496)
                      +++.+.....  ..   .|.+||..++            +.+..+..-.. +  .++++|++++|+.+.          .
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~------------~~~~~i~~g~~-p--~i~~spDg~~lyv~n~~~~~~~rg~~   95 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGSG------------SILGHVNGGFL-P--NPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCCC------------eEEEEecCCCC-C--CeEECCCCCEEEEEeccccccccCCC
Confidence            5565555543  22   8899999887            33344443222 2  899999999888775          3


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      ++.|.+||..+.........                               .......  +......+.|+|++ .+|+.
T Consensus        96 ~~~v~viD~~t~~~~~~i~~-------------------------------~~~~~~~--~g~~p~~~~~spDG-~~l~v  141 (373)
T 2mad_H           96 TDYVEVFDPVTFLPIADIEL-------------------------------PDAPRFD--VGPYSWMNANTPNN-ADLLF  141 (373)
T ss_pred             CCeEEEEECCCCcEEEEEEC-------------------------------CCccccc--cCCCccceEECCCC-CEEEE
Confidence            67899999875432211100                               0000000  01234578999999 45555


Q ss_pred             Ec-C-CCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec----
Q 010997          297 VG-D-DSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE----  369 (496)
Q Consensus       297 ~~-~-dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~----  369 (496)
                      +. . ++.|.++| .+++  .... .. ...   ++.+.|.....+++.+.||.+.++|. .      +..+....    
T Consensus       142 ~n~~~~~~v~viD-~t~~--~~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~------g~~~~~~~~~~~  207 (373)
T 2mad_H          142 FQFAAGPAVGLVV-QGGS--SDDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A------GGAAGAGLVGAM  207 (373)
T ss_pred             EecCCCCeEEEEE-CCCC--EEeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-C------CcEEEEEecccc
Confidence            54 3 58899999 8776  3333 32 212   34455534566777888999999999 6      44432211    


Q ss_pred             -cCCCC-EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          370 -GHSAA-VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       370 -~h~~~-i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                       ....+ .....+.+++..++... ..+.+.+.|+......... .... .. .......-.......++++|++..+++
T Consensus       208 ~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~-~~~~-~~-~~~~~~~~~p~g~~~~~~s~d~~~lyV  283 (373)
T 2mad_H          208 LTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKA-PIDA-LS-GGRKADTWRPGGWQQVAYLKSSDGIYL  283 (373)
T ss_pred             ccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEee-eeee-cC-CcccccceecCceEeEEECCCCCEEEE
Confidence             11222 23356677766554444 5789999998653111100 0000 00 000000001122344788999888887


Q ss_pred             EecCCCCCC----CCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          448 SVSDDCDST----GGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       448 s~s~d~~sg----g~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +....  ..    ..++.|.++|+.      +.+.++++... .....++|+|
T Consensus       284 ~~~~~--~~~~~~~~~~~V~VID~~------t~~vv~~i~~g-~~p~~i~~s~  327 (373)
T 2mad_H          284 LTSEQ--SAWKLHAAAKEVTSVTGL------VGQTSSQISLG-HDVDAISVAQ  327 (373)
T ss_pred             EeccC--CcccccCCCCeEEEEECC------CCEEEEEEECC-CCcCeEEECC
Confidence            65421  00    124689999998      56665665422 2356677665

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.01  E-value=3.8e-10  Score=108.06  Aligned_cols=183  Identities=14%  Similarity=0.064  Sum_probs=98.5

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      ++..|++++.||.|+.||..++            +....+..  + .+.+..+..++..+++++.||.|..||..++...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG------------~~~W~~~~--~-~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~   72 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG------------SIKWTLKE--D-PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL   72 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC------------CEEEEEEC--C-CSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred             eCCEEEEEcCCCEEEEEECCCC------------CEEEEecC--C-CceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence            4568889999999999999988            44445554  2 3556666677878888899999999999876543


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCC
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVG  311 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~  311 (496)
                      .......                                 ... ....++    +. .+ ..+++++.|+.|+.||.+++
T Consensus        73 w~~~~~~---------------------------------~~~-~~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG  112 (369)
T 2hz6_A           73 TKLPFTI---------------------------------PEL-VQASPC----RS-SD-GILYMGKKQDIWYVIDLLTG  112 (369)
T ss_dssp             EECSCCH---------------------------------HHH-HTTCSC----C-------CCCCEEEEEEEEECCC--
T ss_pred             eeeeccC---------------------------------ccc-cccCce----Ee-cC-CEEEEEeCCCEEEEEECCCC
Confidence            2211100                                 000 001111    11 22 35777888999999999988


Q ss_pred             CccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCC---CCEE
Q 010997          312 TSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDK---SSVF  388 (496)
Q Consensus       312 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~---~~ll  388 (496)
                      +  ....+..+.    ...++| ++..+++++.|+.|+.||.++      ++.+..+..+.  .....++++.   ..++
T Consensus       113 ~--~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~t------G~~~W~~~~~~--~~~~~~~~~~~~~~~v~  177 (369)
T 2hz6_A          113 E--KQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKT------RELRWNATYFD--YAASLPEDDVDYKMSHF  177 (369)
T ss_dssp             ---------------------------EEEEEEEEEEECCCSSS------SSCCCEEEEEE--ECCBCCCCCTTCCCCEE
T ss_pred             c--EEEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCC------CCEEEeEeccc--ccCccccCCccccceEE
Confidence            7  333333332    245677 788889999999999999998      66665554221  1223334432   3354


Q ss_pred             EEEeCCCcEEEEECCCC
Q 010997          389 GSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       389 as~~~dg~i~iwd~~~~  405 (496)
                       +++.||.|..||..++
T Consensus       178 -~~~~dg~v~a~d~~tG  193 (369)
T 2hz6_A          178 -VSNGDGLVVTVDSESG  193 (369)
T ss_dssp             -EEETSCEEEEECTTTC
T ss_pred             -EECCCCEEEEEECCCC
Confidence             6778999999999874

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.98  E-value=2.3e-08  Score=93.03  Aligned_cols=194  Identities=11%  Similarity=0.040  Sum_probs=124.5

Q ss_pred             cceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997          198 AEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  276 (496)
Q Consensus       198 ~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (496)
                      ...+..|+|+++ +++++..++.|..|+... .                                         ...+..
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-~-----------------------------------------~~~~~~   83 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-T-----------------------------------------VDVLLD   83 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETTS-C-----------------------------------------EEEEEE
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCCC-C-----------------------------------------EEEEeC
Confidence            356899999988 677888889999998732 1                                         133444


Q ss_pred             CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc----CCCCeEEEEecCCCCcEEEE----EcC----
Q 010997          277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HDADLHCVDWNPLDDNLILT----GSA----  344 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~i~~sp~~~~~l~s----gs~----  344 (496)
                      +...+..+++++++ .++++...++.|.+||.. ++  .......    ....++.++++| ++.++++    |..    
T Consensus        84 ~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~--~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~  158 (305)
T 3dr2_A           84 ATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQ--AHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQ  158 (305)
T ss_dssp             SCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC--EEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGG
T ss_pred             CCCccceeeECCCC-CEEEEECCCCEEEEECCC-CC--EEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCcccccc
Confidence            55678999999998 666666666889999975 44  1111111    123567899999 8888886    442    


Q ss_pred             ---------CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC-----CCcEEEEECCCCCcccC
Q 010997          345 ---------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE-----DGLLNIWDYEKVGKKVE  410 (496)
Q Consensus       345 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~-----dg~i~iwd~~~~~~~~~  410 (496)
                               .+.|..||..+      +.... +. .......++|+|++..|+++.+.     .+.|.+|++...+  ..
T Consensus       159 ~~~~~~~~~~~~v~~~d~~~------g~~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~  228 (305)
T 3dr2_A          159 GCPADPELAHHSVYRLPPDG------SPLQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LH  228 (305)
T ss_dssp             SCCCCCSSSCEEEEEECSSS------CCCEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EE
T ss_pred             ccccccccCCCeEEEEcCCC------CcEEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--cc
Confidence                     25677787755      33322 22 34567899999999876655443     2789999987531  00


Q ss_pred             CCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                              . ...+. .........+++.++|. +.++.        . +.|.+|+..
T Consensus       229 --------~-~~~~~-~~~~~~pdgi~~d~~G~-lwv~~--------~-~gv~~~~~~  266 (305)
T 3dr2_A          229 --------D-RRHFA-SVPDGLPDGFCVDRGGW-LWSSS--------G-TGVCVFDSD  266 (305)
T ss_dssp             --------E-EEEEE-CCSSSCCCSEEECTTSC-EEECC--------S-SEEEEECTT
T ss_pred             --------C-CeEEE-ECCCCCCCeEEECCCCC-EEEec--------C-CcEEEECCC
Confidence                    0 11111 11233456789999887 44322        1 348999886

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.91  E-value=2.6e-08  Score=94.26  Aligned_cols=264  Identities=10%  Similarity=0.042  Sum_probs=153.2

Q ss_pred             ecCCCCcEEEEEeC-----CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec-------
Q 010997          148 ELPQNTKIVATHTD-----SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-------  215 (496)
Q Consensus       148 ~~p~~~~~lat~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~-------  215 (496)
                      ..| +++.+.....     ++.|.+.|..+.            +.+..+..-.. +  .++++|+|++|+.+.       
T Consensus        40 ~~p-d~~~vyV~~~~~~~~~~~V~ViD~~t~------------~v~~~I~vG~~-P--~va~spDG~~lyVan~~~~r~~  103 (386)
T 3sjl_D           40 PAP-DARRVYVNDPAHFAAVTQQFVIDGEAG------------RVIGMIDGGFL-P--NPVVADDGSFIAHASTVFSRIA  103 (386)
T ss_dssp             CCC-CTTEEEEEECGGGCSSEEEEEEETTTT------------EEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETT
T ss_pred             cCC-CCCEEEEEcCcccCCCCEEEEEECCCC------------eEEEEEECCCC-C--cEEECCCCCEEEEEcccccccc
Confidence            356 5555555544     679999999888            44555554333 3  499999999887765       


Q ss_pred             ---CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec-------CCCceeEEE
Q 010997          216 ---KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG-------HEDTVEDVT  285 (496)
Q Consensus       216 ---~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~  285 (496)
                         .++.|.+||..+....                                        ..+.-       .......+.
T Consensus       104 ~G~~~~~VsviD~~t~~v~----------------------------------------~~I~v~~g~r~~~g~~P~~~a  143 (386)
T 3sjl_D          104 RGERTDYVEVFDPVTLLPT----------------------------------------ADIELPDAPRFLVGTYPWMTS  143 (386)
T ss_dssp             EEEEEEEEEEECTTTCCEE----------------------------------------EEEEETTCCCCCBSCCGGGEE
T ss_pred             cCCCCCEEEEEECCCCeEE----------------------------------------EEEECCCccccccCCCCceEE
Confidence               3678999999865432                                        11110       012355789


Q ss_pred             EccCCCceEEEEc-CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 010997          286 FCPSSAQEFCSVG-DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  364 (496)
Q Consensus       286 ~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~  364 (496)
                      |+|+|..++++.. .++.|.++|+.+.+  .+...... .   |....|.....+++.+.||.+.+.++....     ..
T Consensus       144 ~spDGk~lyVan~~~~~~VsVID~~t~~--vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g-----~v  212 (386)
T 3sjl_D          144 LTPDGKTLLFYQFSPAPAVGVVDLEGKA--FKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEG-----TP  212 (386)
T ss_dssp             ECTTSSEEEEEECSSSCEEEEEETTTTE--EEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSS-----CC
T ss_pred             EcCCCCEEEEEEcCCCCeEEEEECCCCc--EEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCC-----eE
Confidence            9999954444443 37899999999887  44444221 1   122234255677788889999999987521     22


Q ss_pred             ceEe----ccCCCCEE-EEEEc-CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe----cC-CCCCc
Q 010997          365 INKF----EGHSAAVL-CVQWS-PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH----AG-HRDKV  433 (496)
Q Consensus       365 ~~~~----~~h~~~i~-~l~~s-p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~-h~~~V  433 (496)
                      ....    ..-..++. ..+|. ++|+.++  .+.+|.|.+.|+.........       + ..++..    .+ .....
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~--vs~~g~V~v~d~~~~~~~v~~-------~-~~~~~~~~~~~g~~p~g~  282 (386)
T 3sjl_D          213 EITHTEVFHPEDEFLINHPAYSQKAGRLVW--PTYTGKIHQIDLSSGDAKFLP-------A-VEALTEAERADGWRPGGW  282 (386)
T ss_dssp             EEEECCCCSCTTSCBCSCCEEETTTTEEEE--EBTTSEEEEEECTTSSCEECC-------C-EESSCHHHHHTTEEECSS
T ss_pred             EEeecceeccccccccccceeEcCCCcEEE--EeCCCEEEEEECCCCcceeec-------c-eeccccccccccccCCCc
Confidence            1111    11112222 24664 6776434  445799999999763211100       0 000000    00 12244


Q ss_pred             ceEEecCCCCcEEEEecCCCCCCC---CCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          434 VDFHWNASDPWTVVSVSDDCDSTG---GGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       434 ~~~~~~p~~~~l~~s~s~d~~sgg---~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ..+++++++..++++..++- -++   ..+.|.+.|+.      +.+.++++..- .++++|+|+|
T Consensus       283 q~~a~~~~~~~lyV~~~~~~-~~~hk~~~~~V~viD~~------t~kv~~~i~vg-~~~~~lavs~  340 (386)
T 3sjl_D          283 QQVAYHRALDRIYLLVDQRD-EWRHKTASRFVVVLDAK------TGERLAKFEMG-HEIDSINVSQ  340 (386)
T ss_dssp             SCEEEETTTTEEEEEEEECC-TTCTTSCEEEEEEEETT------TCCEEEEEEEE-EEECEEEECS
T ss_pred             ceeeECCCCCeEEEEecccc-ccccCCCCCEEEEEECC------CCeEEEEEECC-CCcceEEECC
Confidence            56788998888887643210 001   12579999998      56666665532 3567777765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.89  E-value=1.2e-06  Score=79.54  Aligned_cols=196  Identities=8%  Similarity=-0.043  Sum_probs=123.8

Q ss_pred             ceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          199 EFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       199 v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      ..+++|++++. ++++-...+.|..+++......                                        ..+...
T Consensus        38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~----------------------------------------~~~~~~   77 (267)
T 1npe_A           38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT----------------------------------------TIIRQD   77 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE----------------------------------------EEECTT
T ss_pred             EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE----------------------------------------EEEECC
Confidence            57899999755 4455556789999998643210                                        111112


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC--CCcEEEEeCCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA--DNSVRMFDRRN  355 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~--dg~i~iwd~~~  355 (496)
                      ......+++++++..++++-...+.|.++++....  ..............++++|..+.++++...  .+.|..+++..
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~--~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ--RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC--EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence            24578899999765777777788999999986543  122222223567899999933444444433  46888888764


Q ss_pred             CCCCCCCCCceEec-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997          356 LTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  434 (496)
Q Consensus       356 ~~~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  434 (496)
                             .....+. ..-.....++++|++..|+++-...+.|.++|+.....             ..+.  .+ .....
T Consensus       156 -------~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-------------~~~~--~~-~~~P~  212 (267)
T 1npe_A          156 -------TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-------------RKVL--EG-LQYPF  212 (267)
T ss_dssp             -------CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-------------EEEE--EC-CCSEE
T ss_pred             -------CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-------------EEEe--cC-CCCce
Confidence                   2223222 22346789999998887887887788999999875210             1111  11 12234


Q ss_pred             eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          435 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       435 ~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .++..  +..++++....       +.|.+++..
T Consensus       213 gi~~d--~~~lyva~~~~-------~~v~~~d~~  237 (267)
T 1npe_A          213 AVTSY--GKNLYYTDWKT-------NSVIAMDLA  237 (267)
T ss_dssp             EEEEE--TTEEEEEETTT-------TEEEEEETT
T ss_pred             EEEEe--CCEEEEEECCC-------CeEEEEeCC
Confidence            56554  56677654433       789999987

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.83  E-value=1.5e-06  Score=77.82  Aligned_cols=208  Identities=9%  Similarity=0.023  Sum_probs=136.2

Q ss_pred             cceEEEecCCCc--eeEEEecCCCCcEEEEEeC--CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC
Q 010997          131 VKKHKTIIHPGE--VNRIRELPQNTKIVATHTD--SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP  206 (496)
Q Consensus       131 ~~~~~~~~h~~~--V~~l~~~p~~~~~lat~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p  206 (496)
                      .+++..+.|...  ...++|+| ++.++++.+.  ++.|.++|+.++            +....+.-....-..++++..
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg------------~v~~~i~l~~~~fgeGi~~~g   75 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTG------------KVENIHKMDDSYFGEGLTLLN   75 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTC------------CEEEEEECCTTCCEEEEEEET
T ss_pred             ceEEEEEECCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCC------------CEEEEEecCCCcceEEEEEeC
Confidence            456777888865  57999998 5666666553  579999999988            333333211111122455542


Q ss_pred             CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997          207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       207 ~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  286 (496)
                       +...++.-.++.+.++|..+.+..                                        ..+.....  ....+
T Consensus        76 -~~lyv~t~~~~~v~viD~~t~~v~----------------------------------------~~i~~g~~--~g~gl  112 (266)
T 2iwa_A           76 -EKLYQVVWLKNIGFIYDRRTLSNI----------------------------------------KNFTHQMK--DGWGL  112 (266)
T ss_dssp             -TEEEEEETTCSEEEEEETTTTEEE----------------------------------------EEEECCSS--SCCEE
T ss_pred             -CEEEEEEecCCEEEEEECCCCcEE----------------------------------------EEEECCCC--CeEEE
Confidence             234445557899999998765332                                        22211101  12335


Q ss_pred             ccCCCceEEEEcCCCeEEEEEccCCCccceeeecc--C---CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--H---DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV  361 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~---~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~  361 (496)
                      ++++..+++ +..++.|.++|..+.+  .......  .   -..++.+.|.  ++.+++....++.|.+.|..+      
T Consensus       113 t~Dg~~l~v-s~gs~~l~viD~~t~~--v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~t------  181 (266)
T 2iwa_A          113 ATDGKILYG-SDGTSILYEIDPHTFK--LIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKD------  181 (266)
T ss_dssp             EECSSSEEE-ECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTT------
T ss_pred             EECCCEEEE-ECCCCeEEEEECCCCc--EEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCC------
Confidence            567745554 4568899999998876  3333221  1   1246788887  466667776788999999998      


Q ss_pred             CCCceEeccC-------------CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          362 GSPINKFEGH-------------SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       362 ~~~~~~~~~h-------------~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ++.+..+...             ......|+|+|++..+|+++...+.|.+.++...
T Consensus       182 g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          182 GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            6777776531             1356899999999999999998999999998763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.82  E-value=1.7e-07  Score=88.72  Aligned_cols=213  Identities=10%  Similarity=0.047  Sum_probs=124.0

Q ss_pred             cceeeeecCCCCceEEec--CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee
Q 010997          198 AEFALAMCPTEPYVLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN  275 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (496)
                      ....++++++|+.+++..  .++.++||.+.++... .. +                              ...  ....
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~-p------------------------------~~~--~~~~   63 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PF-P------------------------------PQS--GNAI   63 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ES-C------------------------------CCC--SSCC
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cC-C------------------------------Ccc--cCcc
Confidence            468999999999888864  2343666665432210 00 0                              000  0112


Q ss_pred             cCCCceeEEEEccCCCceEEEEcC-----CCeEEEEEccCCCccceeeec------cCCCCeEEEEecCCCCcEEEEEc-
Q 010997          276 GHEDTVEDVTFCPSSAQEFCSVGD-----DSCLILWDARVGTSPVIKVEK------AHDADLHCVDWNPLDDNLILTGS-  343 (496)
Q Consensus       276 ~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~i~~sp~~~~~l~sgs-  343 (496)
                      .+...+.++++.+++ .++++-..     ++.|.+||+.+++  ....+.      .+...++.++++|.++..+++.. 
T Consensus        64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence            355689999999998 56665433     5799999998776  233222      12345789999983455556655 


Q ss_pred             --CCCcEEEEeCCCCCCCCCCCCceEeccC-----------------------------CCCEEEEEEcCCCCCEEEEEe
Q 010997          344 --ADNSVRMFDRRNLTSNGVGSPINKFEGH-----------------------------SAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       344 --~dg~i~iwd~~~~~~~~~~~~~~~~~~h-----------------------------~~~i~~l~~sp~~~~llas~~  392 (496)
                        .++.|.+||+.+      +.....+.+|                             ...+..|+|+|+++.|+++..
T Consensus       141 ~~~~~~i~v~d~~~------g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          141 PDDKAALIRVDLQT------GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             SGGGCEEEEEETTT------CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES
T ss_pred             cCCCCeEEEEECCC------CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC
Confidence              678999999876      3322222221                             124688999999987664444


Q ss_pred             CCCcEEEEECCCCCcccCCCCCCCCCCCee--EEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGL--FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       393 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ....|..++....... ..      .....  .+...++......+++++++ .++++...+       +.|.+|+..
T Consensus       215 ~~~~l~~~~~~~~~~~-~~------~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~-------~~V~~~d~~  277 (343)
T 2qe8_A          215 HSTSMYRIKSADLSNL-QL------TDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAH-------SAIGVITSA  277 (343)
T ss_dssp             SCSEEEEEEHHHHTCT-TC------CHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGG-------TEEEEEETT
T ss_pred             CCCeEEEEEHHHhcCC-CC------ChhhhhcceEecccCCCCceEEECCCC-CEEEEccCC-------CeEEEEECC
Confidence            3445544443211000 00      00000  00112334456789999986 466655544       899999993

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.78  E-value=2.2e-06  Score=81.70  Aligned_cols=169  Identities=17%  Similarity=0.189  Sum_probs=108.3

Q ss_pred             ceeEEEEccCCCceEEEEcCC------CeEEEEEccCCCccceeeeccC--C-CCeEEEEecCCCCcEEEEEc-------
Q 010997          280 TVEDVTFCPSSAQEFCSVGDD------SCLILWDARVGTSPVIKVEKAH--D-ADLHCVDWNPLDDNLILTGS-------  343 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~i~~sp~~~~~l~sgs-------  343 (496)
                      .-..+.+.|++  +++++..+      |.|.++|..+.+  .+......  . .--..+.|+| +++.+++..       
T Consensus       139 ~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~--v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~  213 (462)
T 2ece_A          139 RLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFE--PLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTI  213 (462)
T ss_dssp             EEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCC--EEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHH
T ss_pred             cccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCe--EEEEEccCCCCccccceEEECC-CCCEEEEccCcCcccc
Confidence            34566788988  56666555      789999999887  44444322  1 2234588899 888888874       


Q ss_pred             ------------CCCcEEEEeCCCCCCCCCCCCceEeccC--CCCEEEEEE--cCCCCCEEEEEe-----CCCcEEEEEC
Q 010997          344 ------------ADNSVRMFDRRNLTSNGVGSPINKFEGH--SAAVLCVQW--SPDKSSVFGSSA-----EDGLLNIWDY  402 (496)
Q Consensus       344 ------------~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~i~~l~~--sp~~~~llas~~-----~dg~i~iwd~  402 (496)
                                  ...+|.+||+.+      ++.+.++..-  ......+.|  +|++++.++++-     .++.|.+|..
T Consensus       214 ~~g~~~~~~~~~~~d~V~v~D~~~------~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~  287 (462)
T 2ece_A          214 EDGLKLEHLKDRYGNRIHFWDLRK------RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY  287 (462)
T ss_dssp             TTCCCTTTHHHHSCCEEEEEETTT------TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ccccchhhhhhccCCEEEEEECCC------CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence                        368999999997      5666666542  123445555  999998887777     7888988776


Q ss_pred             CCCCcccCCCCCCCCCCCeeEE-Ee-------cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          403 EKVGKKVEQGPRTTNYPAGLFF-QH-------AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~-~~-------~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .. +........ + .+..... .+       .+-.....++.+++++++|.+|.-..       +.|.+||+.+
T Consensus       288 d~-g~~~~~~vI-d-i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-------d~VavfdV~d  352 (462)
T 2ece_A          288 ED-GKWNAEKVI-E-IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-------GEVRQYDISN  352 (462)
T ss_dssp             ET-TEEEEEEEE-E-ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-------TEEEEEECSS
T ss_pred             cC-CceeEEEEE-e-CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-------CEEEEEEecC
Confidence            54 211000000 0 0000000 00       00023578999999999999987655       8999999963

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.78  E-value=1.9e-05  Score=71.52  Aligned_cols=200  Identities=6%  Similarity=0.000  Sum_probs=125.6

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSV  220 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i  220 (496)
                      .+..+++.+.++.++++-..++.|.++++....            ....+..... ...++++++++. .+++-...+.|
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~------------~~~~~~~~~~-~p~~ia~d~~~~~lyv~d~~~~~I  103 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE------------PTTIIRQDLG-SPEGIALDHLGRTIFWTDSQLDRI  103 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC------------CEEEECTTCC-CEEEEEEETTTTEEEEEETTTTEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC------------cEEEEECCCC-CccEEEEEecCCeEEEEECCCCEE
Confidence            578999999667777777778899999987651            1122222112 357899998755 44555567889


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC-
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD-  299 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-  299 (496)
                      .+++++.....                                        ............++++|++..++++... 
T Consensus       104 ~~~~~~g~~~~----------------------------------------~~~~~~~~~P~~i~vd~~~g~lyv~~~~~  143 (267)
T 1npe_A          104 EVAKMDGTQRR----------------------------------------VLFDTGLVNPRGIVTDPVRGNLYWTDWNR  143 (267)
T ss_dssp             EEEETTSCSCE----------------------------------------EEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred             EEEEcCCCCEE----------------------------------------EEEECCCCCccEEEEeeCCCEEEEEECCC
Confidence            99987632110                                        0111112356899999976465665544 


Q ss_pred             -CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997          300 -DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  378 (496)
Q Consensus       300 -dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l  378 (496)
                       .+.|..+++....  ............+.++++|..+.++++-...+.|..+|+..      ......+.. ......+
T Consensus       144 ~~~~I~~~~~dg~~--~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g------~~~~~~~~~-~~~P~gi  214 (267)
T 1npe_A          144 DNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ------PGRRKVLEG-LQYPFAV  214 (267)
T ss_dssp             SSCEEEEEETTSCC--CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE------EEEEEEEEC-CCSEEEE
T ss_pred             CCcEEEEEecCCCC--cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC------CceEEEecC-CCCceEE
Confidence             4788888876433  11112123356789999993345556666778999999875      222222222 2344667


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          379 QWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       379 ~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +..  +.+++++....+.|.++|....
T Consensus       215 ~~d--~~~lyva~~~~~~v~~~d~~~g  239 (267)
T 1npe_A          215 TSY--GKNLYYTDWKTNSVIAMDLAIS  239 (267)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             EEe--CCEEEEEECCCCeEEEEeCCCC
Confidence            654  4567777767789999998764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.73  E-value=2.2e-07  Score=89.51  Aligned_cols=260  Identities=9%  Similarity=0.020  Sum_probs=145.3

Q ss_pred             CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec----------CCCcEEEEecCCccccc
Q 010997          163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDKSVVLWSIQDHITSS  232 (496)
Q Consensus       163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~----------~Dg~i~iwd~~~~~~~~  232 (496)
                      +.|.++|..+.            +.+..+..-.. +  .+.++|++++|+.+.          .++.|.++|..+.+...
T Consensus        99 ~~VsVID~~t~------------~vv~~I~vG~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~  163 (426)
T 3c75_H           99 TQQFVIDGSTG------------RILGMTDGGFL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA  163 (426)
T ss_dssp             EEEEEEETTTT------------EEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred             CeEEEEECCCC------------EEEEEEECCCC-C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE
Confidence            69999999988            44455543333 3  899999999887775          46799999998654321


Q ss_pred             cCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc-C-CCeEEEEEccC
Q 010997          233 ATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG-D-DSCLILWDARV  310 (496)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~-dg~i~iwd~~~  310 (496)
                      ......                               . ..+ ........+.|+|++. +++.+. . ++.|.+.|+.+
T Consensus       164 ~I~v~g-------------------------------~-~r~-~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t  209 (426)
T 3c75_H          164 DIELPD-------------------------------A-PRF-LVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEG  209 (426)
T ss_dssp             EEEETT-------------------------------C-CCC-CBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTT
T ss_pred             EEECCC-------------------------------c-ccc-ccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCC
Confidence            110000                               0 000 0012345789999994 555544 3 68999999998


Q ss_pred             CCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCce----EeccCCCCE-EEEEEcCCCC
Q 010997          311 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPIN----KFEGHSAAV-LCVQWSPDKS  385 (496)
Q Consensus       311 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~----~~~~h~~~i-~~l~~sp~~~  385 (496)
                      .+  ....+..- .   +....|.....+++.+.||.+.+.+...      ++...    .+.....++ ..+.|.+++.
T Consensus       210 ~k--vv~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~~------~~v~~~~~~~~~v~~~p~~~~~~~~~dg~  277 (426)
T 3c75_H          210 KT--FDRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFAD------GETKVTNTEVFHTEDELLINHPAFSLRSG  277 (426)
T ss_dssp             TE--EEEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECCT------TCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred             Ce--EEEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECCC------CcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence            87  44443221 1   1233342345666777888888888843      22221    121111221 2356789888


Q ss_pred             CEEEEEeCCCcEEEEECCCCCcccCCCCCC-CCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCC---CCCe
Q 010997          386 SVFGSSAEDGLLNIWDYEKVGKKVEQGPRT-TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTG---GGGT  461 (496)
Q Consensus       386 ~llas~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg---~Dg~  461 (496)
                      .++++ +..+.|.+.|+............. .......-+    .......++++|++..++++....- .++   .++.
T Consensus       278 ~~~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~----~p~g~~~va~s~dg~rlyVa~~~~~-~gthk~~s~~  351 (426)
T 3c75_H          278 RLVWP-TYTGKIFQADLTAEGATFRAPIEALTEAERADDW----RPGGWQQTAYHRQSDRIYLLVDQRD-EWKHKAASRF  351 (426)
T ss_dssp             EEEEE-BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE----EECSSSCEEEEGGGTEEEEEEEECC-TTCTTSCEEE
T ss_pred             EEEEE-eCCCcEEEEeccCCceEEeeeeeecccccccccc----ccCCceeeEEcCCCCEEEEEecccc-cccccCCCCE
Confidence            76544 567899999986532111000000 000000000    0112334789999888887754210 011   2368


Q ss_pred             EEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          462 LQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       462 i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      |.+.|+.      +.+.++++.... ....++|+|
T Consensus       352 VsVID~~------T~kvv~~I~vg~-~P~gia~sp  379 (426)
T 3c75_H          352 VVVLNAE------TGERINKIELGH-EIDSINVSQ  379 (426)
T ss_dssp             EEEEETT------TCCEEEEEEEEE-EECEEEECC
T ss_pred             EEEEECC------CCeEEEEEECCC-CcCeEEEcc
Confidence            9999998      566666665332 356666665

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.68  E-value=2.7e-05  Score=72.67  Aligned_cols=251  Identities=8%  Similarity=-0.063  Sum_probs=137.2

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCc--------eEEecCCCCcceeeeecC-CCCce
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPD--------LILTGHQDNAEFALAMCP-TEPYV  211 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------~~l~~h~~~~v~~l~~~p-~~~~l  211 (496)
                      .....+++.+ +++++.++..++.|..||..+.......... .....        ........ ...++++.+ +++ |
T Consensus        19 ~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~p~gi~~~~~~g~-l   94 (322)
T 2fp8_A           19 YAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYAS-PYWNKAFCENSTDAEKRPLCG-RTYDISYNLQNNQ-L   94 (322)
T ss_dssp             SCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESC-TTCCHHHHTTCCCGGGHHHHC-CEEEEEEETTTTE-E
T ss_pred             CCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEeccc-ccccccccccccchhccccCC-CCceEEEcCCCCc-E
Confidence            3466788888 6787778888999999987754111000000 00000        00000011 357899997 555 4


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEcc-C
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCP-S  289 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~-~  289 (496)
                      +.+...+.|..+|..++......                                     .... .......++++.+ +
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~-------------------------------------~~~~~~~~~~p~~i~~d~~~  137 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLA-------------------------------------TSVDGVPFKWLYAVTVDQRT  137 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEE-------------------------------------SEETTEECSCEEEEEECTTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEec-------------------------------------ccCCCCcccccceEEEecCC
Confidence            44444455888886643211000                                     0000 0112467899999 8


Q ss_pred             CCceEEEEcC-----------------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEE
Q 010997          290 SAQEFCSVGD-----------------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMF  351 (496)
Q Consensus       290 ~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iw  351 (496)
                      + .++++-..                 ++.|..||..++.  .. .........+.|+|+| ++..| ++-+..+.|..|
T Consensus       138 G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~-~~~~~~~~p~gia~~~-dg~~lyv~d~~~~~I~~~  212 (322)
T 2fp8_A          138 G-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE--TT-LLLKELHVPGGAEVSA-DSSFVLVAEFLSHQIVKY  212 (322)
T ss_dssp             C-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--EE-EEEEEESCCCEEEECT-TSSEEEEEEGGGTEEEEE
T ss_pred             C-EEEEECCcccccccccceehcccCCCceEEEEeCCCCE--EE-EeccCCccCcceEECC-CCCEEEEEeCCCCeEEEE
Confidence            7 56655432                 3678888876554  11 1112223457899999 77754 454667899999


Q ss_pred             eCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC----------CCcEEEEECCCCCcccCCCCCCCCCCCe
Q 010997          352 DRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE----------DGLLNIWDYEKVGKKVEQGPRTTNYPAG  421 (496)
Q Consensus       352 d~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~  421 (496)
                      |+....    ......+....+ ...+++.++|. |+++...          .+.|..+|...                .
T Consensus       213 ~~~~~~----~~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G----------------~  270 (322)
T 2fp8_A          213 WLEGPK----KGTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFG----------------N  270 (322)
T ss_dssp             ESSSTT----TTCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTS----------------C
T ss_pred             ECCCCc----CCccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCC----------------C
Confidence            987521    011122221223 78899999997 5555543          35677777542                1


Q ss_pred             eEEEecCC----CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          422 LFFQHAGH----RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       422 ~~~~~~~h----~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .+..+...    ...++.+++.  +..|+++...       .+.|.++++.
T Consensus       271 ~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~-------~~~i~~~~~~  312 (322)
T 2fp8_A          271 ILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLF-------HGSVGILVYD  312 (322)
T ss_dssp             EEEEEECCTTTTTSCCCEEEEE--TTEEEEECSS-------CSEEEEEEC-
T ss_pred             EEEEEECCCCCccccceEEEEe--CCEEEEeecC-------CCceEEEecc
Confidence            22222211    2346667663  4456664433       4889999987

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.67  E-value=5.2e-06  Score=74.26  Aligned_cols=198  Identities=12%  Similarity=0.053  Sum_probs=125.6

Q ss_pred             ceeeeecCCCCceEEecC--CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997          199 EFALAMCPTEPYVLSGGK--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  276 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (496)
                      ..+|.|++++.++++.+.  +++|.+.|+.+++......                                      +..
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~--------------------------------------l~~   64 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK--------------------------------------MDD   64 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE--------------------------------------CCT
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe--------------------------------------cCC
Confidence            468999998765555543  6899999998765422110                                      111


Q ss_pred             CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997          277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                      + .....+++.  +..++++.-.++.+.++|..+.+  .+..+......-..  +++ ++..++++..++.|.++|..+ 
T Consensus        65 ~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--v~~~i~~g~~~g~g--lt~-Dg~~l~vs~gs~~l~viD~~t-  135 (266)
T 2iwa_A           65 S-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--NIKNFTHQMKDGWG--LAT-DGKILYGSDGTSILYEIDPHT-  135 (266)
T ss_dssp             T-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE--EEEEEECCSSSCCE--EEE-CSSSEEEECSSSEEEEECTTT-
T ss_pred             C-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCc--EEEEEECCCCCeEE--EEE-CCCEEEEECCCCeEEEEECCC-
Confidence            1 112345554  43567777789999999998876  34444222122223  444 455455555788999999988 


Q ss_pred             CCCCCCCCceEeccCC-----CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC---
Q 010997          357 TSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG---  428 (496)
Q Consensus       357 ~~~~~~~~~~~~~~h~-----~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---  428 (496)
                           .+.+..+..-.     ..++.+.|. ++ .+++....++.|.+-|..+....            ..+ ...+   
T Consensus       136 -----~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~------------~~I-~~~g~~~  195 (266)
T 2iwa_A          136 -----FKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLL------------GWI-LLPNLRK  195 (266)
T ss_dssp             -----CCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEE------------EEE-ECHHHHH
T ss_pred             -----CcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEE------------EEE-ECCCccc
Confidence                 55666654221     246788888 66 47877777889999999885211            111 1111   


Q ss_pred             ------C--CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          429 ------H--RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       429 ------h--~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                            +  ....+.++|+|++..+++++..       .+.|.+-++...
T Consensus       196 ~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~-------~~~v~~i~l~~~  238 (266)
T 2iwa_A          196 KLIDEGFRDIDVLNGIAWDQENKRIFVTGKL-------WPKLFEIKLHLV  238 (266)
T ss_dssp             HHHHTTCTTCCCEEEEEEETTTTEEEEEETT-------CSEEEEEEEEEC
T ss_pred             ccccccccccCceEEEEEcCCCCEEEEECCC-------CCeEEEEEEecc
Confidence                  0  1355899999999988886544       489999998754

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.66  E-value=1.9e-09  Score=103.12  Aligned_cols=141  Identities=13%  Similarity=0.089  Sum_probs=70.4

Q ss_pred             CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997          207 TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       207 ~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  286 (496)
                      ++..+++++.||.|..||..+++....                                        +..  +.+.+..+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~----------------------------------------~~~--~~~~s~p~   45 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWT----------------------------------------LKE--DPVLQVPT   45 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEE----------------------------------------EEC--CCSCCCC-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE----------------------------------------ecC--CCceecce
Confidence            467899999999999999987754322                                        111  22333333


Q ss_pred             ccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCC-CeE-EEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDA-DLH-CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSP  364 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~-~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~  364 (496)
                      ..++ .++++++.||.|+.||..+++.  ......+.. .+. +..+.  .+..+++|+.|+.|+.||..+      ++.
T Consensus        46 ~~~g-~~~v~~s~dg~l~a~d~~tG~~--~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~t------G~~  114 (369)
T 2hz6_A           46 HVEE-PAFLPDPNDGSLYTLGSKNNEG--LTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLT------GEK  114 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-----CC--SEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------
T ss_pred             EcCC-CEEEEeCCCCEEEEEECCCCce--eeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCC------CcE
Confidence            4455 5778888999999999988772  222211110 010 00111  345677888899999999998      777


Q ss_pred             ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       365 ~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +..+..+.    ...++|++..+ ++++.|+.|+.||..++
T Consensus       115 ~w~~~~~~----~~~~~p~~~~v-~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A          115 QQTLSSAF----ADSLSPSTSLL-YLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             ----------------------E-EEEEEEEEEECCCSSSS
T ss_pred             EEEecCCC----cccccccCCEE-EEEecCCEEEEEECCCC
Confidence            77766543    24566777754 57788999999999874

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.63  E-value=5e-06  Score=73.49  Aligned_cols=192  Identities=11%  Similarity=0.134  Sum_probs=122.5

Q ss_pred             cceEEEecCCCce--eEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC
Q 010997          131 VKKHKTIIHPGEV--NRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP  206 (496)
Q Consensus       131 ~~~~~~~~h~~~V--~~l~~~p~~~~~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p  206 (496)
                      .++++.+.|...-  ..+.|+  ++.++.+.+.+|  .|+++|+.++            +....+.-..  ..++....+
T Consensus        31 ~~vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tg------------kv~~~~~l~~--~~FgeGit~   94 (262)
T 3nol_A           31 YQIVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESG------------KTLQQIELGK--RYFGEGISD   94 (262)
T ss_dssp             EEEEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTC------------CEEEEEECCT--TCCEEEEEE
T ss_pred             eEEEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCC------------cEEEEEecCC--ccceeEEEE
Confidence            3567777887655  778887  457777777766  8999999998            3333443322  234433333


Q ss_pred             CCCceE-EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997          207 TEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  285 (496)
Q Consensus       207 ~~~~l~-sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  285 (496)
                      +++.|. ..-.++.+.++|..+.+..                                        ..+....   ....
T Consensus        95 ~g~~ly~ltw~~~~v~v~D~~t~~~~----------------------------------------~ti~~~~---eG~g  131 (262)
T 3nol_A           95 WKDKIVGLTWKNGLGFVWNIRNLRQV----------------------------------------RSFNYDG---EGWG  131 (262)
T ss_dssp             ETTEEEEEESSSSEEEEEETTTCCEE----------------------------------------EEEECSS---CCCC
T ss_pred             eCCEEEEEEeeCCEEEEEECccCcEE----------------------------------------EEEECCC---CceE
Confidence            455444 4446889999999764332                                        2222211   2223


Q ss_pred             EccCCCceEEEEcCCCeEEEEEccCCCccceeeecc--CC---CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997          286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  360 (496)
Q Consensus       286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~  360 (496)
                      +++++. .|+.+..++.|.++|..+.+  .......  ..   ..++.+.|.  ++.+++..-.+..|.+.|.++     
T Consensus       132 lt~dg~-~L~~SdGs~~i~~iDp~T~~--v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~t-----  201 (262)
T 3nol_A          132 LTHNDQ-YLIMSDGTPVLRFLDPESLT--PVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPET-----  201 (262)
T ss_dssp             EEECSS-CEEECCSSSEEEEECTTTCS--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTT-----
T ss_pred             EecCCC-EEEEECCCCeEEEEcCCCCe--EEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCC-----
Confidence            345663 44444457889999998876  3333222  11   345667776  577777776788999999998     


Q ss_pred             CCCCceEeccC------------CCCEEEEEEcCCCCCEEEEEe
Q 010997          361 VGSPINKFEGH------------SAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       361 ~~~~~~~~~~h------------~~~i~~l~~sp~~~~llas~~  392 (496)
                       ++.+..+...            ....+.|+|+|++..||++|-
T Consensus       202 -G~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          202 -GKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             -CBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             -CcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence             6666666431            235689999999998887774

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.62  E-value=2.6e-06  Score=84.16  Aligned_cols=153  Identities=14%  Similarity=0.162  Sum_probs=92.0

Q ss_pred             CeEEEEEccC--CCccceeeeccCCCCeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCCC------CCCCCCceEeccC
Q 010997          301 SCLILWDARV--GTSPVIKVEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTS------NGVGSPINKFEGH  371 (496)
Q Consensus       301 g~i~iwd~~~--~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~dg~i~iwd~~~~~~------~~~~~~~~~~~~h  371 (496)
                      +.|.+.|.++  +. ...... .-.....++.++| ++.+++ ++..+.+|.++|+.+...      ......+..+. -
T Consensus       254 ~~V~VID~~~~~~~-~~~~~I-pvg~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-v  329 (595)
T 1fwx_A          254 NGVKVVDGRKEASS-LFTRYI-PIANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L  329 (595)
T ss_dssp             TTEEEEECSGGGCC-SSEEEE-EEESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-C
T ss_pred             CcEEEEeCcccCCc-eeEEEE-ecCCCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-C
Confidence            3488888887  33 112222 2234567899999 777655 455688999999996210      00001122232 2


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC-----CCCcceEEecCCCCcEE
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH-----RDKVVDFHWNASDPWTV  446 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~~~~~p~~~~l~  446 (496)
                      ......++|+|+| +++++.-.|+.|.+||+.........+     ...+.+..+.-|     ...-..+..+|+|.+|+
T Consensus       330 G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~-----~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          330 GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGE-----KVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  403 (595)
T ss_dssp             CSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTC-----SCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             CCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhccc-----ccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence            3467899999999 788888889999999987621111000     011334444333     32334567799999988


Q ss_pred             EEecCCCCCCCCCCeE----------EEeecC
Q 010997          447 VSVSDDCDSTGGGGTL----------QIWRMS  468 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i----------~iw~~~  468 (496)
                      ++..     ++.|+.+          +++|++
T Consensus       404 ~~Nk-----~skdr~~~~gp~~~~~~ql~dis  430 (595)
T 1fwx_A          404 CLSK-----FSKDRFLNVGPLKPENDQLIDIS  430 (595)
T ss_dssp             EEES-----CCTTSSCCCCSSCCEEEEEEECS
T ss_pred             EcCC-----CCccccccCCCCCCCcceEEEcC
Confidence            7753     3334432          888886

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.61  E-value=4.1e-05  Score=72.22  Aligned_cols=198  Identities=7%  Similarity=-0.018  Sum_probs=125.9

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc-eEEecCCCc
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKDKS  219 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~-l~sg~~Dg~  219 (496)
                      +...|.+..+ .+.++++  ....|+..++...            .....+.+...  ..+++|++.+.. +++-...+.
T Consensus        34 d~~~C~~~~~-~~~ll~~--~~~~I~~i~~~g~------------~~~~~~~~~~~--~~~l~~d~~~~~ly~~D~~~~~   96 (349)
T 3v64_C           34 DRRSCKALGP-EPVLLFA--NRIDIRQVLPHRS------------EYTLLLNNLEN--AIALDFHHRRELVFWSDVTLDR   96 (349)
T ss_dssp             TSSCEEESSS-CCEEEEE--CBSCEEEECTTSC------------CEEEEECSCSC--EEEEEEETTTTEEEEEETTTTE
T ss_pred             CCCccccccc-CceeEee--cccceEEEeCCCC------------eeEEeecCCCc--eEEEEEeccccEEEEEeccCCc
Confidence            3455666555 5544444  2346887777654            22223333332  579999976554 445556788


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      |..++++.....                                        ..+.........+++.+.+..++++-..
T Consensus        97 I~r~~~~g~~~~----------------------------------------~~~~~~~~~p~glavd~~~g~ly~~d~~  136 (349)
T 3v64_C           97 ILRANLNGSNVE----------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSG  136 (349)
T ss_dssp             EEEEETTSCSCE----------------------------------------EEECSSCSCCCEEEEETTTTEEEEEETT
T ss_pred             eEEEecCCCCce----------------------------------------EEEeCCCCCccEEEEecCCCeEEEEcCC
Confidence            888887643210                                        1111122345788888766577788788


Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEec-cCCCCEEE
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLC  377 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~  377 (496)
                      .+.|.+.++....  ........-...+.|+++|..+.++.+-... +.|..+++..       .....+. ..-.....
T Consensus       137 ~~~I~~~~~dG~~--~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~~~~PnG  207 (349)
T 3v64_C          137 TSRIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTHLFWPNG  207 (349)
T ss_dssp             TTEEEEEETTSCS--CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEESCCSSCSCEEE
T ss_pred             CCeEEEEcCCCCc--eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECCCCCcce
Confidence            8899999987544  2222323445679999999555666665555 7898888774       3333332 22345789


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      |+|+|++..|+++-...+.|..+|+..
T Consensus       208 la~d~~~~~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          208 LTIDYAGRRMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            999998887887777788999999875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.59  E-value=2.8e-05  Score=74.52  Aligned_cols=196  Identities=7%  Similarity=-0.021  Sum_probs=123.9

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEE
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVV  221 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~  221 (496)
                      -.|.+..+ .+.++++  ....|+..++...            .....+.+..  ...+++|.+.+. ++++-...+.|.
T Consensus        79 ~~C~~~~~-~~~l~~~--~~~~I~~i~~~~~------------~~~~~~~~~~--~~~gl~~d~~~~~ly~~D~~~~~I~  141 (386)
T 3v65_B           79 RSCKALGP-EPVLLFA--NRIDIRQVLPHRS------------EYTLLLNNLE--NAIALDFHHRRELVFWSDVTLDRIL  141 (386)
T ss_dssp             SCEEECSS-CCEEEEE--CBSCEEEECTTSC------------CCEEEECSCS--CEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CeECCccc-cceeEee--cCccceeeccCCC------------cEEEEecCCC--ccEEEEEecCCCeEEEEeCCCCcEE
Confidence            44555444 4444433  3357888888765            2223333333  357999997655 445555678898


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      .++++.....                                        ..+.........+++.+.+..++++-...+
T Consensus       142 r~~~~g~~~~----------------------------------------~~~~~~~~~p~glavd~~~g~lY~~d~~~~  181 (386)
T 3v65_B          142 RANLNGSNVE----------------------------------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTS  181 (386)
T ss_dssp             EEETTSCCEE----------------------------------------EEECSSCSCCCCEEEETTTTEEEEEETTTT
T ss_pred             EEecCCCCcE----------------------------------------EEEeCCCCCccEEEEEeCCCeEEEEcCCCC
Confidence            8888643210                                        111112234567888876657778877888


Q ss_pred             eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEE
Q 010997          302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQ  379 (496)
Q Consensus       302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~  379 (496)
                      .|.+.++....  ............+.|+++|..+.++++-... +.|..+++..       .....+ ...-.....|+
T Consensus       182 ~I~~~~~dg~~--~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~~~~PnGla  252 (386)
T 3v65_B          182 RIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTHLFWPNGLT  252 (386)
T ss_dssp             EEEECBTTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSSCSCEEEEE
T ss_pred             eEEEEeCCCCc--eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECCCCCeeeEE
Confidence            99998886544  2222333446789999998455555665555 7888888774       333333 22334578999


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          380 WSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       380 ~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      |+|++..|+++-+..+.|..+|+..
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          253 IDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCC
Confidence            9998887887777788999999865

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.58  E-value=2.2e-06  Score=88.61  Aligned_cols=187  Identities=11%  Similarity=0.052  Sum_probs=95.6

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecC-CCCcceeeeecC--CCCceEEecC------CCcEEEE
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCP--TEPYVLSGGK------DKSVVLW  223 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h-~~~~v~~l~~~p--~~~~l~sg~~------Dg~i~iw  223 (496)
                      +..|+.++.|+.|..+|..++            +.+..+..+ .......+.-.|  .+..++.++.      +|.|..+
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG------------~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~  195 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATG------------KEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAY  195 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTC------------CEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCC------------CEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEE
Confidence            346777888999999999988            333333332 100001111111  2344555543      7999999


Q ss_pred             ecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC--
Q 010997          224 SIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS--  301 (496)
Q Consensus       224 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--  301 (496)
                      |..+++.....................      ......|.. ... .....+.......+++.|++ .+++.+..++  
T Consensus       196 D~~tG~~~W~~~~~~~~~~~~~~~~~~------~~g~~~w~~-~g~-~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~  266 (677)
T 1kb0_A          196 DAETGERKWRWFSVPGDPSKPFEDESM------KRAARTWDP-SGK-WWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSP  266 (677)
T ss_dssp             ETTTCCEEEEEESSCCCTTSCCSSHHH------HHHHTTSCG-GGC-HHHHCEECCCCSCEEEETTT-TEEEEECCCEES
T ss_pred             ECCCCcEEEEeccCCCCcccccccccc------ccccccccc-cCc-eeEeCCCcccccceeEcCCC-CEEEEECCCCcc
Confidence            999887654433211000000000000      000000000 000 00000112223467788877 5666666553  


Q ss_pred             -----------------eEEEEEccCCCccceeeec--cCC-------CCeEEEEecCCCC---cEEEEEcCCCcEEEEe
Q 010997          302 -----------------CLILWDARVGTSPVIKVEK--AHD-------ADLHCVDWNPLDD---NLILTGSADNSVRMFD  352 (496)
Q Consensus       302 -----------------~i~iwd~~~~~~~~~~~~~--~~~-------~~v~~i~~sp~~~---~~l~sgs~dg~i~iwd  352 (496)
                                       .|..+|.++++  ....+.  .|.       .....+.... ++   ..++.++.+|.|+++|
T Consensus       267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD  343 (677)
T 1kb0_A          267 WSHKVRSPKGGDNLYLASIVALDPDTGK--YKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLD  343 (677)
T ss_dssp             SCHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEE
T ss_pred             ccCCCCCccCCCCeeeEEEEEEECCCCC--EEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEE
Confidence                             59999999988  333322  221       1222333333 45   6899999999999999


Q ss_pred             CCCCCCCCCCCCceEec
Q 010997          353 RRNLTSNGVGSPINKFE  369 (496)
Q Consensus       353 ~~~~~~~~~~~~~~~~~  369 (496)
                      ..+      ++.+..+.
T Consensus       344 ~~t------G~~l~~~~  354 (677)
T 1kb0_A          344 RTN------GKFISAKN  354 (677)
T ss_dssp             TTT------CCEEEEEE
T ss_pred             CCC------CCEecccc
Confidence            998      66655443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.58  E-value=5.4e-06  Score=85.82  Aligned_cols=176  Identities=10%  Similarity=0.087  Sum_probs=90.3

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecC-CCCcceeeeecC---CCCceEEec------CCCcEEE
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCP---TEPYVLSGG------KDKSVVL  222 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h-~~~~v~~l~~~p---~~~~l~sg~------~Dg~i~i  222 (496)
                      +..|+.++.|+.|+.+|..++.            .+..+... .......+..+|   ++. ++.++      .+|.|..
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~------------~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a  187 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQ------------RAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTA  187 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCC------------EEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCC------------EeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEE
Confidence            3467788899999999999883            22222221 000111222223   444 44443      3789999


Q ss_pred             EecCCccccccCCcccc-ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997          223 WSIQDHITSSATDPATA-KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       223 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      ||..+++.......... .............       ...+..   ..-....++......+++.|+. .+++.+..++
T Consensus       188 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~-------~~~~~g---~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g  256 (689)
T 1yiq_A          188 YDAETGKEAWRFYTVPGDPKLPPEGKGMEIA-------AKTWFG---DAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNG  256 (689)
T ss_dssp             EETTTCCEEEEEESSCCCTTSCCCSHHHHHH-------HTTCCS---STHHHHCEECCCCSCEEEETTT-TEEEEECCCE
T ss_pred             EECCCCcEEEEecccCCCccccccccccccc-------ccccCC---ceeeecCCCCccccceeEcCCC-CEEEEeCCCC
Confidence            99999876554321100 0000000000000       000000   0000000111222357788877 5777777765


Q ss_pred             -------------------eEEEEEccCCCccceeeecc--CC-------CCeEEEEecCCCCc---EEEEEcCCCcEEE
Q 010997          302 -------------------CLILWDARVGTSPVIKVEKA--HD-------ADLHCVDWNPLDDN---LILTGSADNSVRM  350 (496)
Q Consensus       302 -------------------~i~iwd~~~~~~~~~~~~~~--~~-------~~v~~i~~sp~~~~---~l~sgs~dg~i~i  350 (496)
                                         .|..+|.++++  ....+..  |.       ..+....... ++.   .++.++.+|.+++
T Consensus       257 ~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~--~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~  333 (689)
T 1yiq_A          257 SLWDPKWRSQAKGDNLFLSSIVAVNADTGE--YVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYV  333 (689)
T ss_dssp             ESSCHHHHHTTCSCCTTTTEEEEEETTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEE
T ss_pred             CccccCCCCCCCCCceeeeeEEEEEccCCc--eeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEE
Confidence                               39999999988  3333322  21       1222222222 343   7889999999999


Q ss_pred             EeCCC
Q 010997          351 FDRRN  355 (496)
Q Consensus       351 wd~~~  355 (496)
                      +|.++
T Consensus       334 lD~~t  338 (689)
T 1yiq_A          334 IDRAT  338 (689)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            99988

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.51  E-value=1.7e-05  Score=74.07  Aligned_cols=216  Identities=7%  Similarity=-0.019  Sum_probs=131.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccccc
Q 010997          154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA  233 (496)
Q Consensus       154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~  233 (496)
                      ..|..++.++.|..+|.. +            +.......+.. .+.++...+++. |..|+.++.|..+|.. +...  
T Consensus       108 ~~l~v~t~~~~l~~~d~~-g------------~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~--  169 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTD-G------------TEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEK--  169 (330)
T ss_dssp             TEEEEECTTSEEEEECTT-S------------CEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT-SCEE--
T ss_pred             CEEEEEecCCEEEEEcCC-C------------CEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEe--
Confidence            356677788899999987 5            22223333332 356666766665 6667778999999976 3221  


Q ss_pred             CCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc
Q 010997          234 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS  313 (496)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  313 (496)
                                                            ..+......+.++...+++ . +..++  +.|..+| .++. 
T Consensus       170 --------------------------------------~~~~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~~d-~~g~-  205 (330)
T 3hxj_A          170 --------------------------------------WRFKTNDAITSAASIGKDG-T-IYFGS--DKVYAIN-PDGT-  205 (330)
T ss_dssp             --------------------------------------EEEECSSCCCSCCEECTTC-C-EEEES--SSEEEEC-TTSC-
T ss_pred             --------------------------------------EEEecCCCceeeeEEcCCC-E-EEEEe--CEEEEEC-CCCc-
Confidence                                                  1122223345566666666 4 44454  7899999 5555 


Q ss_pred             cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeC
Q 010997          314 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE  393 (496)
Q Consensus       314 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~  393 (496)
                       ...........+.++...+ ++. |..++.++.|..+|..       +..+..+......+..+.+.+++. |+ .++.
T Consensus       206 -~~~~~~~~~~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t~  273 (330)
T 3hxj_A          206 -EKWNFYAGYWTVTRPAISE-DGT-IYVTSLDGHLYAINPD-------GTEKWRFKTGKRIESSPVIGNTDT-IY-FGSY  273 (330)
T ss_dssp             -EEEEECCSSCCCSCCEECT-TSC-EEEEETTTEEEEECTT-------SCEEEEEECSSCCCSCCEECTTSC-EE-EECT
T ss_pred             -EEEEEccCCcceeceEECC-CCe-EEEEcCCCeEEEECCC-------CCEeEEeeCCCCccccceEcCCCe-EE-EecC
Confidence             3333434456678888887 554 5556667788888743       455555554444445566666665 54 6777


Q ss_pred             CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          394 DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       394 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +|.|..+|. ..               ..+.........+.++...+++. +.+        |+.+|.+++....
T Consensus       274 ~ggl~~~d~-~g---------------~~~~~~~~~~~~~~~~~~d~~g~-l~~--------gt~~G~~~~~~~~  323 (330)
T 3hxj_A          274 DGHLYAINP-DG---------------TEKWNFETGSWIIATPVIDENGT-IYF--------GTRNGKFYALFNL  323 (330)
T ss_dssp             TCEEEEECT-TS---------------CEEEEEECSSCCCSCCEECTTCC-EEE--------ECTTSCEEEEEC-
T ss_pred             CCCEEEECC-CC---------------cEEEEEEcCCccccceEEcCCCE-EEE--------EcCCCeEEEEecc
Confidence            888999985 32               12223333345677777777654 453        3345899988776

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.51  E-value=8.9e-05  Score=65.85  Aligned_cols=208  Identities=9%  Similarity=0.097  Sum_probs=130.1

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceE--EecCCCCcceeeeecCCCCceEEec
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI--LTGHQDNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--l~~h~~~~v~~l~~~p~~~~l~sg~  215 (496)
                      +-.+++..++|.|+++.++|+...++.|...|.. +            +....  +.+..+  .-+|++.+++.++++.-
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g------------~v~~~i~l~g~~D--~EGIa~~~~g~~~vs~E   88 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G------------DLIRTIPLDFVKD--LETIEYIGDNQFVISDE   88 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C------------CEEEEEECSSCSS--EEEEEECSTTEEEEEET
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C------------CEEEEEecCCCCC--hHHeEEeCCCEEEEEEC
Confidence            4446799999999666777778888999999987 4            22222  234333  46889988888777777


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      .++.+.++++............                             .. ++. ..........|+|.|.+. .|+
T Consensus        89 ~~~~l~~~~v~~~~~i~~~~~~-----------------------------~~-~~~-~~~~N~g~EGLA~d~~~~-~L~  136 (255)
T 3qqz_A           89 RDYAIYVISLTPNSEVKILKKI-----------------------------KI-PLQ-ESPTNCGFEGLAYSRQDH-TFW  136 (255)
T ss_dssp             TTTEEEEEEECTTCCEEEEEEE-----------------------------EC-CCS-SCCCSSCCEEEEEETTTT-EEE
T ss_pred             CCCcEEEEEcCCCCeeeeeeee-----------------------------cc-ccc-cccccCCcceEEEeCCCC-EEE
Confidence            7889999987643210000000                             00 000 012345578999999984 444


Q ss_pred             EEcCCCeEEEEEccCC-Cccceeee-------ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          296 SVGDDSCLILWDARVG-TSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~-~~~~~~~~-------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      ++.+.....||.+... ........       ..+...+..++++|..+.+++.......|..+|...       ..+..
T Consensus       137 va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-------~~~~~  209 (255)
T 3qqz_A          137 FFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-------EVIGE  209 (255)
T ss_dssp             EEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-------CEEEE
T ss_pred             EEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-------CEEEE
Confidence            4554444455554311 00011111       123456789999998888889999999999999774       54444


Q ss_pred             eccCC---------CCEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997          368 FEGHS---------AAVLCVQWSPDKSSVFGSSAEDGLLNIWD  401 (496)
Q Consensus       368 ~~~h~---------~~i~~l~~sp~~~~llas~~~dg~i~iwd  401 (496)
                      +.-..         ...-.|+|.++|. |+++ ++-+.+++|.
T Consensus       210 ~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          210 MSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETTTEEEEEE
T ss_pred             EEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCCceEEEEE
Confidence            43221         3568999999997 6655 5666655554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.49  E-value=4.1e-05  Score=67.03  Aligned_cols=192  Identities=9%  Similarity=0.088  Sum_probs=120.7

Q ss_pred             cceEEEecCCCc--eeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC
Q 010997          131 VKKHKTIIHPGE--VNRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP  206 (496)
Q Consensus       131 ~~~~~~~~h~~~--V~~l~~~p~~~~~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p  206 (496)
                      .++++.+.|...  ...+.|++  +.++.+.+.+|  .|+++|+.++            +....+.-...  .++....+
T Consensus         9 ~~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tg------------kv~~~~~l~~~--~fgeGi~~   72 (243)
T 3mbr_X            9 YRVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETG------------RILQRAEVPPP--YFGAGIVA   72 (243)
T ss_dssp             EEEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTC------------CEEEEEECCTT--CCEEEEEE
T ss_pred             eEEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCC------------CEEEEEeCCCC--cceeEEEE
Confidence            456777788755  44888876  56677777654  8999999998            33333332222  23333333


Q ss_pred             CCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997          207 TEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  285 (496)
Q Consensus       207 ~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  285 (496)
                      .++ ..+..-.++.+.++|.++....                                        ..+.... .-..+ 
T Consensus        73 ~~~~ly~ltw~~~~v~v~D~~tl~~~----------------------------------------~ti~~~~-~Gwgl-  110 (243)
T 3mbr_X           73 WRDRLIQLTWRNHEGFVYDLATLTPR----------------------------------------ARFRYPG-EGWAL-  110 (243)
T ss_dssp             ETTEEEEEESSSSEEEEEETTTTEEE----------------------------------------EEEECSS-CCCEE-
T ss_pred             eCCEEEEEEeeCCEEEEEECCcCcEE----------------------------------------EEEeCCC-CceEE-
Confidence            344 4444557899999998765332                                        2222211 11333 


Q ss_pred             EccCCCceEEEEcCCCeEEEEEccCCCccceeeecc--CC---CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC
Q 010997          286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG  360 (496)
Q Consensus       286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~  360 (496)
                       ++++..+++| ..++.|.++|..+.+  .......  +.   ..++.+.|.  ++.+++..-.+..|.+.|.++     
T Consensus       111 -t~dg~~L~vS-dgs~~l~~iDp~t~~--~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~t-----  179 (243)
T 3mbr_X          111 -TSDDSHLYMS-DGTAVIRKLDPDTLQ--QVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPAS-----  179 (243)
T ss_dssp             -EECSSCEEEE-CSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTT-----
T ss_pred             -eeCCCEEEEE-CCCCeEEEEeCCCCe--EEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCC-----
Confidence             3566444444 558899999998876  3333222  11   345677776  567777666788999999998     


Q ss_pred             CCCCceEecc-------------CCCCEEEEEEcCCCCCEEEEEe
Q 010997          361 VGSPINKFEG-------------HSAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       361 ~~~~~~~~~~-------------h~~~i~~l~~sp~~~~llas~~  392 (496)
                       ++.+..+..             -..-.+.|+++|++..||+||-
T Consensus       180 -G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          180 -GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             -CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             -CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence             666666541             1235689999999888887774

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.49  E-value=0.00041  Score=64.33  Aligned_cols=183  Identities=5%  Similarity=-0.045  Sum_probs=114.3

Q ss_pred             CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCcccccc
Q 010997          163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKS  241 (496)
Q Consensus       163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~  241 (496)
                      ..|+..|+...            .....+..-.  ...+++|++.+. .+++-...+.|..+++......          
T Consensus        10 ~~I~~i~~~~~------------~~~~~~~~~~--~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~----------   65 (316)
T 1ijq_A           10 HEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV----------   65 (316)
T ss_dssp             SSEEEEETTSC------------CCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC----------------
T ss_pred             CeEEEEECCCc------------ceEehhcCCC--ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC----------
Confidence            46888888776            2222333322  357999998755 4555566789999988641000          


Q ss_pred             CCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc
Q 010997          242 AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA  321 (496)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  321 (496)
                                                ......+.........+++.+.+.+++++-...+.|.++|+....  .......
T Consensus        66 --------------------------~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~--~~~~~~~  117 (316)
T 1ijq_A           66 --------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRE  117 (316)
T ss_dssp             ----------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEEC
T ss_pred             --------------------------cccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc--eEEEEEC
Confidence                                      000011111223457888887665777777888999999987543  2222223


Q ss_pred             CCCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 010997          322 HDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI  399 (496)
Q Consensus       322 ~~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~i  399 (496)
                      .......++++|..+.++++.... +.|..+++..       .....+ ...-.....|+++|++..|+++-+..+.|..
T Consensus       118 ~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-------~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~  190 (316)
T 1ijq_A          118 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  190 (316)
T ss_dssp             TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-------CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence            345778999998445555554443 7888888763       333333 2233467899999988878877777889999


Q ss_pred             EECCC
Q 010997          400 WDYEK  404 (496)
Q Consensus       400 wd~~~  404 (496)
                      +|+..
T Consensus       191 ~d~dg  195 (316)
T 1ijq_A          191 IDVNG  195 (316)
T ss_dssp             EETTS
T ss_pred             EecCC
Confidence            99875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.49  E-value=1.6e-05  Score=70.27  Aligned_cols=190  Identities=7%  Similarity=0.037  Sum_probs=122.2

Q ss_pred             ceEEEecCCCce--eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC
Q 010997          132 KKHKTIIHPGEV--NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP  209 (496)
Q Consensus       132 ~~~~~~~h~~~V--~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~  209 (496)
                      ++++.+.|...-  ..+.|.  ++.++.+.+.+|.|+++|+.++            +....+ -..  ..++....++++
T Consensus        44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tg------------kv~~~~-l~~--~~FgeGit~~g~  106 (268)
T 3nok_A           44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESA------------QPVWME-RLG--NIFAEGLASDGE  106 (268)
T ss_dssp             EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCS------------SCSEEE-ECT--TCCEEEEEECSS
T ss_pred             EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCC------------cEEeEE-CCC--CcceeEEEEeCC
Confidence            466777786554  577776  4678888889999999999998            333333 111  233422333444


Q ss_pred             -ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          210 -YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       210 -~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                       ..+..-.++.+.++|.++.+..                                        ..+... ..-..++  +
T Consensus       107 ~Ly~ltw~~~~v~V~D~~Tl~~~----------------------------------------~ti~~~-~eGwGLt--~  143 (268)
T 3nok_A          107 RLYQLTWTEGLLFTWSGMPPQRE----------------------------------------RTTRYS-GEGWGLC--Y  143 (268)
T ss_dssp             CEEEEESSSCEEEEEETTTTEEE----------------------------------------EEEECS-SCCCCEE--E
T ss_pred             EEEEEEccCCEEEEEECCcCcEE----------------------------------------EEEeCC-CceeEEe--c
Confidence             3444557899999999865432                                        222211 1113333  4


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCCccceeeecc--CC---CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA--HD---ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~  363 (496)
                      ++ ..|+.+..++.|.++|..+.+  .......  +.   ..++.+.|.  ++.+++..-.+..|.+.|.++      ++
T Consensus       144 Dg-~~L~vSdGs~~l~~iDp~T~~--v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~T------G~  212 (268)
T 3nok_A          144 WN-GKLVRSDGGTMLTFHEPDGFA--LVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPAT------GT  212 (268)
T ss_dssp             ET-TEEEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTT------CB
T ss_pred             CC-CEEEEECCCCEEEEEcCCCCe--EEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCC------Cc
Confidence            56 445555568999999998877  3333221  22   245777877  567777776788999999998      67


Q ss_pred             CceEeccC-------------CCCEEEEEEcCCCCCEEEEEe
Q 010997          364 PINKFEGH-------------SAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       364 ~~~~~~~h-------------~~~i~~l~~sp~~~~llas~~  392 (496)
                      .+..+...             ..-.+.|+|+|++..||+||-
T Consensus       213 V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          213 VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            66665421             235789999999888998774

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.48  E-value=0.00014  Score=67.15  Aligned_cols=242  Identities=9%  Similarity=0.018  Sum_probs=136.8

Q ss_pred             cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      .+....+.-......+++.+ +++++++-..++.|..||.....             ...+.. .. ...++++.+++++
T Consensus        22 ~~~~~~~p~~~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~-------------~~~~~~-~~-~p~gia~~~dG~l   85 (306)
T 2p4o_A           22 AKIITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQ-------------QIHATV-EG-KVSGLAFTSNGDL   85 (306)
T ss_dssp             EEEEEEECTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCE-------------EEEEEC-SS-EEEEEEECTTSCE
T ss_pred             ceEeEeCCCCCCcceEEECC-CCCEEEEeCCCCeEEEECCCCce-------------EEEEeC-CC-CceeEEEcCCCcE
Confidence            34455555456788999999 77888887788999999876541             111211 12 4679999999986


Q ss_pred             eEEecCC-C-cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          211 VLSGGKD-K-SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       211 l~sg~~D-g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      +++.... + .|..+|..++.....                                      ..+ ........++..+
T Consensus        86 ~vad~~~~~~~v~~~d~~~g~~~~~--------------------------------------~~~-~~~~~~~g~~~~~  126 (306)
T 2p4o_A           86 VATGWNADSIPVVSLVKSDGTVETL--------------------------------------LTL-PDAIFLNGITPLS  126 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEE--------------------------------------EEC-TTCSCEEEEEESS
T ss_pred             EEEeccCCcceEEEEcCCCCeEEEE--------------------------------------EeC-CCccccCcccccC
Confidence            5554332 2 465566554322100                                      000 0111223444444


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCCcccee--------eeccCCCCeEEEEecCCCC-cEEEEEcCCCcEEEEeCCCCCCC
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGTSPVIK--------VEKAHDADLHCVDWNPLDD-NLILTGSADNSVRMFDRRNLTSN  359 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~~~~~~~v~~i~~sp~~~-~~l~sgs~dg~i~iwd~~~~~~~  359 (496)
                      .+ ..+++-..++.|..+|...+......        .....-...+.|  +| ++ .++++-+..+.|..||+..... 
T Consensus       127 ~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~-dg~~lyv~d~~~~~I~~~~~~~~g~-  201 (306)
T 2p4o_A          127 DT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR-FGNFLYVSNTEKMLLLRIPVDSTDK-  201 (306)
T ss_dssp             SS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE-ETTEEEEEETTTTEEEEEEBCTTSC-
T ss_pred             CC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc-CCCEEEEEeCCCCEEEEEEeCCCCC-
Confidence            44 45566556888988887653210110        000111244556  67 55 4556666788999999874110 


Q ss_pred             CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEec
Q 010997          360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN  439 (496)
Q Consensus       360 ~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~  439 (496)
                        ......+.. ......++++++|. ++++....+.|.++|...  +.            ..+..........++++|.
T Consensus       202 --~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G--~~------------~~~~~~~~~~~~p~~~a~~  263 (306)
T 2p4o_A          202 --PGEPEIFVE-QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDR--ST------------TIIAQAEQGVIGSTAVAFG  263 (306)
T ss_dssp             --BCCCEEEEE-SCCCSSEEEBTTCC-EEEECBTTCCEEEECTTC--CE------------EEEECGGGTCTTEEEEEEC
T ss_pred             --CCccEEEec-cCCCCCeEECCCCC-EEEEeCCCCeEEEECCCC--CE------------EEEeecccccCCceEEEEe
Confidence              011122211 13456789999996 676766678899998652  11            1111122223457899998


Q ss_pred             ---CCCCcEEEEec
Q 010997          440 ---ASDPWTVVSVS  450 (496)
Q Consensus       440 ---p~~~~l~~s~s  450 (496)
                         |++..|+++.+
T Consensus       264 g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          264 QTEGDCTAIYVVTN  277 (306)
T ss_dssp             CSTTTTTEEEEEEC
T ss_pred             cccCCCCEEEEECC
Confidence               78788887764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.47  E-value=2e-05  Score=69.67  Aligned_cols=191  Identities=10%  Similarity=0.078  Sum_probs=114.1

Q ss_pred             ceeeeecCCCCceEEecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997          199 EFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  276 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (496)
                      ..+|.|+ ++.++.+.+.+|  +|+++|+.+++....                                        +.-
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~----------------------------------------~~l   83 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ----------------------------------------IEL   83 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE----------------------------------------EEC
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE----------------------------------------Eec
Confidence            4678888 677777777776  999999987654321                                        111


Q ss_pred             CCCce--eEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCC
Q 010997          277 HEDTV--EDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR  354 (496)
Q Consensus       277 h~~~v--~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~  354 (496)
                      . ...  ..+..  .+..++++.-.++.+.+||..+.+  .+..+... ..-..++  + ++..|+.+..++.|.++|..
T Consensus        84 ~-~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~-~eG~glt--~-dg~~L~~SdGs~~i~~iDp~  154 (262)
T 3nol_A           84 G-KRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLR--QVRSFNYD-GEGWGLT--H-NDQYLIMSDGTPVLRFLDPE  154 (262)
T ss_dssp             C-TTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCC--EEEEEECS-SCCCCEE--E-CSSCEEECCSSSEEEEECTT
T ss_pred             C-CccceeEEEE--eCCEEEEEEeeCCEEEEEECccCc--EEEEEECC-CCceEEe--c-CCCEEEEECCCCeEEEEcCC
Confidence            1 112  22333  344566666678999999999887  44444322 2223444  3 45555555557889999999


Q ss_pred             CCCCCCCCCCceEeccC--C---CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCC
Q 010997          355 NLTSNGVGSPINKFEGH--S---AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGH  429 (496)
Q Consensus       355 ~~~~~~~~~~~~~~~~h--~---~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h  429 (496)
                      +      .+.+.++...  .   ..++.+.|. +|. |+|..-.++.|.+.|..++........... .+...  ....-
T Consensus       155 T------~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L-~~~~~--~~~~~  223 (262)
T 3nol_A          155 S------LTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGI-LAEAG--PLPSP  223 (262)
T ss_dssp             T------CSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTG-GGGSC--SCCSS
T ss_pred             C------CeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcC-ccccc--cccCc
Confidence            8      5666665432  1   345668887 564 887776788999999988421110000000 00000  00011


Q ss_pred             CCCcceEEecCCCCcEEEEec
Q 010997          430 RDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       430 ~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      ....+.+||+|++..+++++-
T Consensus       224 ~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          224 IDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CCCEEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEcCCCCEEEEECC
Confidence            235688999999888888653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.44  E-value=2.3e-06  Score=80.10  Aligned_cols=250  Identities=13%  Similarity=0.061  Sum_probs=135.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccC
Q 010997          155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT  234 (496)
Q Consensus       155 ~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~  234 (496)
                      .|..++.++.|..|| .++..            ......+.. .+.++...+++. |..++.+  |..+|. ++......
T Consensus        32 ~l~v~t~~~~l~~~d-~~g~~------------~~~~~~~~~-~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           32 TIYLGSSNKNLYAIN-TDGSV------------KWFFKSGEI-IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRF   93 (330)
T ss_dssp             CEECSSTTTTTEEEC-TTSCE------------EESSCGGGE-EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGS
T ss_pred             eEEEEcCCCEEEEEC-CCCcE------------EEEEecCCC-cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEE
Confidence            466677788899999 66521            111111222 346666766665 4445444  888886 44332222


Q ss_pred             CccccccCCC--CCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCC
Q 010997          235 DPATAKSAGS--SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT  312 (496)
Q Consensus       235 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~  312 (496)
                      ..........  ....+...  ...+.+..++.. ......+......+.++...+++  .+..++.++.|..+|.. ++
T Consensus        94 ~~~~~~~~~~~~~~~~l~v~--t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~  167 (330)
T 3hxj_A           94 DTKKAIVSDFTIFEDILYVT--SMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GT  167 (330)
T ss_dssp             CC-----CCEEEETTEEEEE--CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SC
T ss_pred             ECCCCcccCceEECCEEEEE--ecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CC
Confidence            1111000000  00001110  112223333333 33334444444556666776666  36677888999999988 55


Q ss_pred             ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997          313 SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       313 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~  392 (496)
                        ...........+.++...+ ++.++ .++  +.|..+| .+      +..+..+......+.++...+++. ++ .++
T Consensus       168 --~~~~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~------g~~~~~~~~~~~~~~~~~~~~~g~-l~-v~t  232 (330)
T 3hxj_A          168 --EKWRFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PD------GTEKWNFYAGYWTVTRPAISEDGT-IY-VTS  232 (330)
T ss_dssp             --EEEEEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TT------SCEEEEECCSSCCCSCCEECTTSC-EE-EEE
T ss_pred             --EeEEEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CC------CcEEEEEccCCcceeceEECCCCe-EE-EEc
Confidence              3333334455677777776 56544 444  7899999 55      566666665566788888888876 55 566


Q ss_pred             CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       393 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .++.|..+|...                ..+.........+..+...+++ .+.++        +.+|.|..++..
T Consensus       233 ~~~gl~~~~~~g----------------~~~~~~~~~~~~~~~~~~~~~g-~l~v~--------t~~ggl~~~d~~  283 (330)
T 3hxj_A          233 LDGHLYAINPDG----------------TEKWRFKTGKRIESSPVIGNTD-TIYFG--------SYDGHLYAINPD  283 (330)
T ss_dssp             TTTEEEEECTTS----------------CEEEEEECSSCCCSCCEECTTS-CEEEE--------CTTCEEEEECTT
T ss_pred             CCCeEEEECCCC----------------CEeEEeeCCCCccccceEcCCC-eEEEe--------cCCCCEEEECCC
Confidence            677888887432                1222233333334455565544 44432        224678888753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.44  E-value=0.00028  Score=67.81  Aligned_cols=184  Identities=5%  Similarity=-0.041  Sum_probs=116.4

Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEecCCccccccCCccccc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSATDPATAK  240 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~  240 (496)
                      ...|+..++...            .....+.+..  .+.+|+|++.+..| ++-...+.|..+++......         
T Consensus        91 ~~~I~~i~l~~~------------~~~~~~~~~~--~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---------  147 (400)
T 3p5b_L           91 RHEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------  147 (400)
T ss_dssp             TTEEEEECTTSC------------SCEEEECSCS--CEEEEEEETTTTEEEEEETTTTEEEEEEC---------------
T ss_pred             cceeEEEccCCc------------ceeEeccccC--cceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---------
Confidence            357888888765            2222333332  36799999865544 45456788888887642100         


Q ss_pred             cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec
Q 010997          241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  320 (496)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  320 (496)
                                                 ......+.........+++.+.+.+++++-...+.|.+.++....  ......
T Consensus       148 ---------------------------~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~--~~~l~~  198 (400)
T 3p5b_L          148 ---------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFR  198 (400)
T ss_dssp             ---------------------------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS--EEEEEE
T ss_pred             ---------------------------CcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc--eEEEEe
Confidence                                       000122222334677899988655778888888999999987654  222233


Q ss_pred             cCCCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997          321 AHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN  398 (496)
Q Consensus       321 ~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~  398 (496)
                      ........|+++|..+.++.+-.. .+.|...++..       .....+ ...-.....|+++|++..|+.+-...+.|.
T Consensus       199 ~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG-------~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~  271 (400)
T 3p5b_L          199 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  271 (400)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-------CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-------CccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEE
Confidence            344568899999944555555433 47888888874       333333 333356789999998887887777788999


Q ss_pred             EEECCC
Q 010997          399 IWDYEK  404 (496)
Q Consensus       399 iwd~~~  404 (496)
                      .+|+..
T Consensus       272 ~~d~dG  277 (400)
T 3p5b_L          272 SIDVNG  277 (400)
T ss_dssp             EEETTS
T ss_pred             EEeCCC
Confidence            999875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.43  E-value=0.00067  Score=63.85  Aligned_cols=204  Identities=3%  Similarity=-0.059  Sum_probs=129.5

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGK  216 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~  216 (496)
                      .....+..++|.+.++.++.+-...+.|+.+++....            ....+..... ...++++.+.+ +++++-..
T Consensus        70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~------------~~~~~~~~~~-~p~glavd~~~g~ly~~d~~  136 (349)
T 3v64_C           70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN------------VEEVVSTGLE-SPGGLAVDWVHDKLYWTDSG  136 (349)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------CEEEECSSCS-CCCEEEEETTTTEEEEEETT
T ss_pred             cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCC------------ceEEEeCCCC-CccEEEEecCCCeEEEEcCC
Confidence            3345578999998677777777778899999987652            1112221112 24688888754 45556666


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      .+.|.+.+++.....                                        ..+........++++.|.+..++++
T Consensus       137 ~~~I~~~~~dG~~~~----------------------------------------~l~~~~l~~P~~iavdp~~g~ly~t  176 (349)
T 3v64_C          137 TSRIEVANLDGAHRK----------------------------------------VLLWQSLEKPRAIALHPMEGTIYWT  176 (349)
T ss_dssp             TTEEEEEETTSCSCE----------------------------------------EEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             CCeEEEEcCCCCceE----------------------------------------EEEeCCCCCcceEEEecCcCeEEEe
Confidence            788999887642110                                        1112223456899999976567777


Q ss_pred             EcCC-CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997          297 VGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  375 (496)
Q Consensus       297 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i  375 (496)
                      -... +.|..+++....  ........-...+.|+++|..+.+.++-+..+.|..+|+..      ......+...-...
T Consensus       177 d~~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG------~~~~~~~~~~~~~P  248 (349)
T 3v64_C          177 DWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHP  248 (349)
T ss_dssp             ECSSSCEEEEEETTSCS--CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEECSSCSSE
T ss_pred             ccCCCCEEEEEeCCCCC--cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC------CceEEEEeCCCCCc
Confidence            6666 889999886543  22222223456789999984556666666778899999874      22222233334556


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ..|++.  +..++.+-...+.|..++...
T Consensus       249 ~giav~--~~~ly~td~~~~~V~~~~~~~  275 (349)
T 3v64_C          249 FAITVF--EDSLYWTDWHTKSINSANKFT  275 (349)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEE--CCEEEEecCCCCeEEEEEccC
Confidence            788883  334777777788888888544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.42  E-value=2.6e-05  Score=80.48  Aligned_cols=101  Identities=12%  Similarity=0.058  Sum_probs=62.4

Q ss_pred             CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEE
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQ  425 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  425 (496)
                      |.|..||+.+      ++.+.++. +..++....+...+..+ +.++.||.+++||..+.               +.+..
T Consensus       457 g~l~A~D~~t------G~~~W~~~-~~~~~~~g~~~~~g~~v-~~g~~dg~l~a~D~~tG---------------~~lw~  513 (677)
T 1kb0_A          457 GRLLAWDPVA------QKAAWSVE-HVSPWNGGTLTTAGNVV-FQGTADGRLVAYHAATG---------------EKLWE  513 (677)
T ss_dssp             EEEEEEETTT------TEEEEEEE-ESSSCCCCEEEETTTEE-EEECTTSEEEEEETTTC---------------CEEEE
T ss_pred             cEEEEEeCCC------CcEEeecC-CCCCCcCcceEeCCCEE-EEECCCCcEEEEECCCC---------------ceeee
Confidence            7899999988      67666665 33444455566677644 57889999999999985               33443


Q ss_pred             ec-CCCCCcceEEecCCCCcEEEEecCC---------CCCCCCCCeEEEeecCC
Q 010997          426 HA-GHRDKVVDFHWNASDPWTVVSVSDD---------CDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       426 ~~-~h~~~V~~~~~~p~~~~l~~s~s~d---------~~sgg~Dg~i~iw~~~~  469 (496)
                      +. ++...-.-+.|..+|..+++..+.-         .......+.+.+|.+..
T Consensus       514 ~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          514 APTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG  567 (677)
T ss_dssp             EECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred             eeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence            33 3333334566667776555543220         00011147888898874

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.41  E-value=0.00035  Score=66.83  Aligned_cols=204  Identities=3%  Similarity=-0.059  Sum_probs=128.7

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGK  216 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~  216 (496)
                      .-...+..++|.+.++.++.+-...+.|+.+++....            ....+..... ...++++.+.+. ++++-..
T Consensus       113 ~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~------------~~~~~~~~~~-~p~glavd~~~g~lY~~d~~  179 (386)
T 3v65_B          113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN------------VEEVVSTGLE-SPGGLAVDWVHDKLYWTDSG  179 (386)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC------------EEEEECSSCS-CCCCEEEETTTTEEEEEETT
T ss_pred             cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC------------cEEEEeCCCC-CccEEEEEeCCCeEEEEcCC
Confidence            3345678999998677777777778899999987651            1111221112 236788887544 4455556


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      .+.|.+.+++.....                                        ..+........++++.|.+..++++
T Consensus       180 ~~~I~~~~~dg~~~~----------------------------------------~l~~~~l~~P~giavdp~~g~ly~t  219 (386)
T 3v65_B          180 TSRIEVANLDGAHRK----------------------------------------VLLWQSLEKPRAIALHPMEGTIYWT  219 (386)
T ss_dssp             TTEEEECBTTSCSCE----------------------------------------EEECSSCSCEEEEEEETTTTEEEEE
T ss_pred             CCeEEEEeCCCCceE----------------------------------------EeecCCCCCCcEEEEEcCCCeEEEe
Confidence            778888777532110                                        1122223457899999877566776


Q ss_pred             EcCC-CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997          297 VGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  375 (496)
Q Consensus       297 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i  375 (496)
                      -... +.|..+++....  ........-...+.|+|+|..+.++++-+..+.|..+|+..      ......+.......
T Consensus       220 d~~~~~~I~r~~~dG~~--~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG------~~~~~~~~~~~~~P  291 (386)
T 3v65_B          220 DWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQGLPHP  291 (386)
T ss_dssp             ECSSSCEEEEEETTSCS--CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS------CSCEEEECSSCSSE
T ss_pred             ccCCCCEEEEEeCCCCC--cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC------CeeEEEEECCCCCc
Confidence            6555 789888886544  22222233456789999984556666666778899999864      22222233334456


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ..|++.  +..++.+....+.|..+|...
T Consensus       292 ~giav~--~~~ly~td~~~~~V~~~~~~~  318 (386)
T 3v65_B          292 FAITVF--EDSLYWTDWHTKSINSANKFT  318 (386)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             eEEEEE--CCEEEEeeCCCCeEEEEECCC
Confidence            788883  334777877788898888544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.40  E-value=3.8e-05  Score=73.28  Aligned_cols=219  Identities=11%  Similarity=0.004  Sum_probs=116.6

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccc
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSS  232 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~  232 (496)
                      +..++.++.++.|..+|..++.            .......... .......  .+..++.++.++.|..+|..++....
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~------------~~W~~~~~~~-~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W  167 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGT------------VAWQTKVAGE-ALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKW  167 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCC------------EEEEEECSSC-CCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCC------------EEEEEeCCCc-eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence            3466778889999999998883            2223322221 1111122  24467788889999999998876544


Q ss_pred             cCCcccccc-CC--CC----CceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC-------ceeEEEEcc--CCCceEEE
Q 010997          233 ATDPATAKS-AG--SS----GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED-------TVEDVTFCP--SSAQEFCS  296 (496)
Q Consensus       233 ~~~~~~~~~-~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-------~v~~l~~~~--~~~~~l~s  296 (496)
                      ......... ..  ..    ...+...  ...+.+..++..+.+.+........       .+.++...|  .+ ..++.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~v~~g--~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~  244 (376)
T 3q7m_A          168 TVNLDMPSLSLRGESAPTTAFGAAVVG--GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFA  244 (376)
T ss_dssp             EEECCC-----CCCCCCEEETTEEEEC--CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEE
T ss_pred             EEeCCCCceeecCCCCcEEECCEEEEE--cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEE
Confidence            332211100 00  00    0011111  1122233333333433333221100       000000111  12 45777


Q ss_pred             EcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc-CCCCE
Q 010997          297 VGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-HSAAV  375 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~i  375 (496)
                      ++.++.+..+|.++++  ......  ......+..   .+..+..++.++.|..+|..+      ++.+..... ....+
T Consensus       245 ~~~~g~l~~~d~~tG~--~~w~~~--~~~~~~~~~---~~~~l~~~~~~g~l~~~d~~t------G~~~w~~~~~~~~~~  311 (376)
T 3q7m_A          245 LAYNGNLTALDLRSGQ--IMWKRE--LGSVNDFIV---DGNRIYLVDQNDRVMALTIDG------GVTLWTQSDLLHRLL  311 (376)
T ss_dssp             ECTTSCEEEEETTTCC--EEEEEC--CCCEEEEEE---ETTEEEEEETTCCEEEEETTT------CCEEEEECTTTTSCC
T ss_pred             EecCcEEEEEECCCCc--EEeecc--CCCCCCceE---ECCEEEEEcCCCeEEEEECCC------CcEEEeecccCCCcc
Confidence            7889999999999887  333322  233444544   356677778899999999988      666655542 12222


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ......  +..| ..++.+|.|.++|..+.
T Consensus       312 ~~~~~~--~~~l-~v~~~~g~l~~~d~~tG  338 (376)
T 3q7m_A          312 TSPVLY--NGNL-VVGDSEGYLHWINVEDG  338 (376)
T ss_dssp             CCCEEE--TTEE-EEECTTSEEEEEETTTC
T ss_pred             cCCEEE--CCEE-EEEeCCCeEEEEECCCC
Confidence            223332  3334 47788999999999874

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.39  E-value=5.4e-05  Score=72.23  Aligned_cols=222  Identities=13%  Similarity=0.070  Sum_probs=115.9

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC--------CCcceeeeecCCCCceEEecCCCcEEEEe
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--------DNAEFALAMCPTEPYVLSGGKDKSVVLWS  224 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~--------~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd  224 (496)
                      +..|..++.++.|..+|..++...            .......        ...+.+ ....++..++.++.++.|..+|
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~------------W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d  119 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEI------------WSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALN  119 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEE------------EEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCcee------------eeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEE
Confidence            346667778889999999887322            2222110        111111 1112455777888899999999


Q ss_pred             cCCccccccCCccccccCCC--CCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCce-----eEEEEccCCCceEEEE
Q 010997          225 IQDHITSSATDPATAKSAGS--SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTV-----EDVTFCPSSAQEFCSV  297 (496)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~l~~~~~~~~~l~s~  297 (496)
                      ..+++...............  ....+...  ...+.+..++..+.+.+..+.......     ......  + ..++.+
T Consensus       120 ~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~--~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g  194 (376)
T 3q7m_A          120 TSDGTVAWQTKVAGEALSRPVVSDGLVLIH--TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVG  194 (376)
T ss_dssp             TTTCCEEEEEECSSCCCSCCEEETTEEEEE--CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEEC
T ss_pred             CCCCCEEEEEeCCCceEcCCEEECCEEEEE--cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEE
Confidence            98876544332211100000  00011110  112233333444444433333221110     111222  2 357778


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCC-------CeEEEEecCC-CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDA-------DLHCVDWNPL-DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~v~~i~~sp~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      +.++.|..+|..+++  ..........       .+..+.-.|. .+..+..++.++.|..+|.++      ++.+....
T Consensus       195 ~~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t------G~~~w~~~  266 (376)
T 3q7m_A          195 GDNGRVSAVLMEQGQ--MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS------GQIMWKRE  266 (376)
T ss_dssp             CTTTEEEEEETTTCC--EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT------CCEEEEEC
T ss_pred             cCCCEEEEEECCCCc--EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC------CcEEeecc
Confidence            889999999999887  3322221110       0000111110 246677788899999999988      66665554


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                        ......+...  +..++ .++.++.|..+|..+.
T Consensus       267 --~~~~~~~~~~--~~~l~-~~~~~g~l~~~d~~tG  297 (376)
T 3q7m_A          267 --LGSVNDFIVD--GNRIY-LVDQNDRVMALTIDGG  297 (376)
T ss_dssp             --CCCEEEEEEE--TTEEE-EEETTCCEEEEETTTC
T ss_pred             --CCCCCCceEE--CCEEE-EEcCCCeEEEEECCCC
Confidence              2334455443  44354 6677899999999874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.37  E-value=3e-05  Score=80.24  Aligned_cols=83  Identities=6%  Similarity=0.001  Sum_probs=53.7

Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  424 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  424 (496)
                      +|.|..||+.+      ++.+.++..+. ++....+...+. ++..++.||.++.||.+++               +++.
T Consensus       454 ~g~l~A~D~~t------G~~~W~~~~~~-~~~~g~~~tagg-lvf~gt~dg~l~a~D~~tG---------------~~lw  510 (689)
T 1yiq_A          454 SGKLIAWDPVK------QQAAWEVPYVT-IFNGGTLSTAGN-LVFEGSADGRVIAYAADTG---------------EKLW  510 (689)
T ss_dssp             EEEEEEEETTT------TEEEEEEEESS-SCCCCEEEETTT-EEEEECTTSEEEEEETTTC---------------CEEE
T ss_pred             ceeEEEEECCC------CCeEeEccCCC-CccCccceECCC-EEEEECCCCcEEEEECCCC---------------ccce
Confidence            37799999998      77777665443 233334555666 4558899999999999985               3444


Q ss_pred             EecCC-CCCcceEEecCCCCcEEEEec
Q 010997          425 QHAGH-RDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       425 ~~~~h-~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      .+... .....-+.|..+|...++..+
T Consensus       511 ~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          511 EQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             EEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             eeeCCCCcccCceEEEECCEEEEEEEe
Confidence            44332 222345677777776665543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.36  E-value=8.9e-05  Score=65.49  Aligned_cols=181  Identities=5%  Similarity=0.001  Sum_probs=116.1

Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  278 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  278 (496)
                      ..+|.|+ ++.++++.+.+|.|+++|+++++.....                                       +.. .
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---------------------------------------l~~-~   95 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME---------------------------------------RLG-N   95 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE---------------------------------------ECT-T
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE---------------------------------------CCC-C
Confidence            3578887 4567778888999999999876543211                                       111 1


Q ss_pred             CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCC
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTS  358 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~  358 (496)
                      .--..+.+  .+..++++.-.++.+.+||..+.+  .+..+.. ...-..+++   ++..|+.+..++.|.++|..+   
T Consensus        96 ~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~-~~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T---  164 (268)
T 3nok_A           96 IFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQ--RERTTRY-SGEGWGLCY---WNGKLVRSDGGTMLTFHEPDG---  164 (268)
T ss_dssp             CCEEEEEE--CSSCEEEEESSSCEEEEEETTTTE--EEEEEEC-SSCCCCEEE---ETTEEEEECSSSEEEEECTTT---
T ss_pred             cceeEEEE--eCCEEEEEEccCCEEEEEECCcCc--EEEEEeC-CCceeEEec---CCCEEEEECCCCEEEEEcCCC---
Confidence            11123444  344567777789999999999877  4444432 222234454   456666666789999999998   


Q ss_pred             CCCCCCceEeccCC-----CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec------
Q 010997          359 NGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA------  427 (496)
Q Consensus       359 ~~~~~~~~~~~~h~-----~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------  427 (496)
                         .+.+.++....     ..++.+.|. +|. |+|..-.++.|.+-|..++.-..             ...+.      
T Consensus       165 ---~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~-------------~Idl~~L~~~~  226 (268)
T 3nok_A          165 ---FALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVG-------------VIDASALTRAV  226 (268)
T ss_dssp             ---CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEE-------------EEECHHHHHHH
T ss_pred             ---CeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEE-------------EEECCCCcccc
Confidence               56666654321     245778887 664 88777678899999998742110             01111      


Q ss_pred             -----CCCCCcceEEecCCCCcEEEEe
Q 010997          428 -----GHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       428 -----~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                           .-.+..+.+||+|++..|++++
T Consensus       227 ~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          227 AGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             cccccCcCCceEEEEEcCCCCEEEEeC
Confidence                 1123568999999988888865

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.35  E-value=0.00018  Score=75.39  Aligned_cols=197  Identities=13%  Similarity=0.120  Sum_probs=109.6

Q ss_pred             ceeEEEec-CCCCcEEEEEe-CCC----cEEEEeCCCC-CCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          142 EVNRIREL-PQNTKIVATHT-DSP----DVLIWDVEAQ-PNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       142 ~V~~l~~~-p~~~~~lat~~-~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .+...+|+ | ++++||-+. .+|    .|+++|+.++ ....        .   .+..    ....++|+|||+.|+..
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--------~---~~~~----~~~~~~WspDg~~l~y~  238 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--------D---KVSG----TNGEIVWGPDHTSLFYV  238 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--------C---CEEE----ECSCCEECSSTTEEEEE
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--------c---cccC----ceeeEEEecCCCEEEEE
Confidence            57788999 8 777776443 333    4999999876 3110        0   1111    23578999999877766


Q ss_pred             cCC-----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEcc
Q 010997          215 GKD-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCP  288 (496)
Q Consensus       215 ~~D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~  288 (496)
                      ..|     ..|.++++.++...                                      ....+. ........+.|+|
T Consensus       239 ~~d~~~~~~~v~~~~lgt~~~~--------------------------------------~~lv~~~~~~~~~~~~~~Sp  280 (751)
T 2xe4_A          239 TKDETLRENKVWRHVMGKLQSE--------------------------------------DVCLYEEHNPLFSAFMYKAA  280 (751)
T ss_dssp             EECTTCCEEEEEEEETTSCGGG--------------------------------------CEEEEECCCTTCEEEEEECT
T ss_pred             EECCCCCCCEEEEEECCCCchh--------------------------------------cEEEEecCCCceEEEEEECC
Confidence            655     25667776543210                                      011222 1223456789999


Q ss_pred             CCCceEEEEc--CCCeEEEEEccCCCccc--eeeeccCCCCeEEEEecCCCCcEEEEEcCC--C--cEEEEeCCCCCCCC
Q 010997          289 SSAQEFCSVG--DDSCLILWDARVGTSPV--IKVEKAHDADLHCVDWNPLDDNLILTGSAD--N--SVRMFDRRNLTSNG  360 (496)
Q Consensus       289 ~~~~~l~s~~--~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d--g--~i~iwd~~~~~~~~  360 (496)
                      ++..++++..  ....|.++|+.++....  .............+.|+. ++.+++....+  +  .|..+|+.+     
T Consensus       281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~-----  354 (751)
T 2xe4_A          281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ-----  354 (751)
T ss_dssp             TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS-----
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC-----
Confidence            9954444443  23468888987753222  222233445566676655 44455555443  3  566666653     


Q ss_pred             CCCCceE-eccCCCC--EEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997          361 VGSPINK-FEGHSAA--VLCVQWSPDKSSVFGSSAEDGLLNIWD  401 (496)
Q Consensus       361 ~~~~~~~-~~~h~~~--i~~l~~sp~~~~llas~~~dg~i~iwd  401 (496)
                       ...... +..+...  +..+.+  .+..|+++...++..+||-
T Consensus       355 -~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          355 -PSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             -TTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEE
T ss_pred             -cccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEE
Confidence             111222 2233333  444444  4566777888888655443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.31  E-value=7.1e-06  Score=77.57  Aligned_cols=258  Identities=9%  Similarity=-0.062  Sum_probs=138.8

Q ss_pred             cEEEEEeCCC----cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec----------CCCc
Q 010997          154 KIVATHTDSP----DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG----------KDKS  219 (496)
Q Consensus       154 ~~lat~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~----------~Dg~  219 (496)
                      ..+++-..++    .|.+.|..+.            +.+..+..-.. +  .+.++|++++++.+.          .++.
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~------------~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~   97 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCG------------VTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTT------------EEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             eEEEECCccCCccceEEEEECCCC------------eEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCE
Confidence            3444544444    8889999888            45555554443 4  799999999888775          4789


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC-------CCceeEEEEccCCCc
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH-------EDTVEDVTFCPSSAQ  292 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~  292 (496)
                      |.+||+.+.+..                                        ..+.-.       ......+.++|++. 
T Consensus        98 VsviD~~T~~vv----------------------------------------~~I~v~~~~~~~~g~~P~~ia~SpDGk-  136 (368)
T 1mda_H           98 VEVFDPVTFLPI----------------------------------------ADIELPDAPRFSVGPRVHIIGNCASSA-  136 (368)
T ss_dssp             EEEECTTTCCEE----------------------------------------EEEEETTSCSCCBSCCTTSEEECTTSS-
T ss_pred             EEEEECCCCCEE----------------------------------------EEEECCCccccccCCCcceEEEcCCCC-
Confidence            999999875432                                        222111       12345789999994 


Q ss_pred             eEEEEc-C-CCeEEE--EEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc---
Q 010997          293 EFCSVG-D-DSCLIL--WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI---  365 (496)
Q Consensus       293 ~l~s~~-~-dg~i~i--wd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---  365 (496)
                      +++.+. . +..|.+  +|+.+ .    ..... ...   +.+.|.....+++.+.||.+.+.|+....... ++..   
T Consensus       137 ~lyVan~~~~~~v~V~~iD~~t-v----~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~-~~v~~~~  206 (368)
T 1mda_H          137 CLLFFLFGSSAAAGLSVPGASD-D----QLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA-GIVGAQC  206 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTEE-E----EEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC-EECCCCS
T ss_pred             EEEEEccCCCCeEEEEEEchhh-c----eEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccC-CeEEEEe
Confidence            555554 3 467888  88876 1    11111 111   22334234566677788888888887500000 0111   


Q ss_pred             -eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC-CCCCcceEEecCCCC
Q 010997          366 -NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDP  443 (496)
Q Consensus       366 -~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~  443 (496)
                       ..+.....+.   . ++++..++ ..+. +.|.+.|+.............. .....   ..+ +......++++|++.
T Consensus       207 t~~i~vg~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~-~~~~~---~~~~~p~g~~~v~~s~dg~  276 (368)
T 1mda_H          207 TGAQNCSSQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGN-ESGRK---ADNFRSAGFQMVAKLKNTD  276 (368)
T ss_dssp             CTTSCBCSCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSS-CTHHH---HTTEEECSSSCEEEETTTT
T ss_pred             eeeeeCCCCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEec-ccccc---ccccccCcceeeEEcCCCC
Confidence             0111123343   3 56665544 3444 8999999865211100000000 00000   000 011222378999999


Q ss_pred             cEEEEec---CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          444 WTVVSVS---DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       444 ~l~~s~s---~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      .++++..   ..+ -+. ++.+.++|+.      +.+.++++.... ....++|+|
T Consensus       277 ~lyV~~~~~~~~~-~~~-~~~~~ViD~~------t~~vv~~i~vg~-~p~gi~~s~  323 (368)
T 1mda_H          277 GIMILTVEHSRSC-LAA-AENTSSVTAS------VGQTSGPISNGH-DSDAIIAAQ  323 (368)
T ss_dssp             EEEEEEEECSSCT-TSC-EEEEEEEESS------SCCEEECCEEEE-EECEEEECC
T ss_pred             EEEEEeccccCcc-ccc-CCCEEEEECC------CCeEEEEEECCC-CcceEEECC
Confidence            8887643   100 000 1345599998      556666665443 456666665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.31  E-value=0.00025  Score=62.09  Aligned_cols=195  Identities=9%  Similarity=-0.022  Sum_probs=113.6

Q ss_pred             cceeeeecCCCCceEEecCCC--cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee
Q 010997          198 AEFALAMCPTEPYVLSGGKDK--SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN  275 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (496)
                      -..+|.|++ +.++.+.+.+|  +|+.+|+.+++......                                      +.
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~--------------------------------------l~   62 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE--------------------------------------VP   62 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE--------------------------------------CC
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe--------------------------------------CC
Confidence            355889986 56666777654  99999998765432111                                      00


Q ss_pred             cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCC
Q 010997          276 GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       276 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~  355 (496)
                      .+ .--..+.+.  +..+++..-.++.+.+||..+.+  .+..+... ..-..++.   ++..|+.+..++.|.++|..+
T Consensus        63 ~~-~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~--~~~ti~~~-~~Gwglt~---dg~~L~vSdgs~~l~~iDp~t  133 (243)
T 3mbr_X           63 PP-YFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT--PRARFRYP-GEGWALTS---DDSHLYMSDGTAVIRKLDPDT  133 (243)
T ss_dssp             TT-CCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE--EEEEEECS-SCCCEEEE---CSSCEEEECSSSEEEEECTTT
T ss_pred             CC-cceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc--EEEEEeCC-CCceEEee---CCCEEEEECCCCeEEEEeCCC
Confidence            11 011233333  33566677789999999998877  44444322 22245554   445555555688999999998


Q ss_pred             CCCCCCCCCceEeccCC-----CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCC
Q 010997          356 LTSNGVGSPINKFEGHS-----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR  430 (496)
Q Consensus       356 ~~~~~~~~~~~~~~~h~-----~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  430 (496)
                            .+.+.++....     ..++.+.|. +|. ++|..-.+..|.+.|..++.......-... .+.... ....-.
T Consensus       134 ------~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l-~~~~~~-~~~~~~  203 (243)
T 3mbr_X          134 ------LQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQAL-VPDADA-LTDSTN  203 (243)
T ss_dssp             ------CCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGG-STTTTS-CCCTTS
T ss_pred             ------CeEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcC-cccccc-ccCCcC
Confidence                  55666664321     345677776 554 777776678899999988421110000000 000000 000112


Q ss_pred             CCcceEEecCCCCcEEEEec
Q 010997          431 DKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       431 ~~V~~~~~~p~~~~l~~s~s  450 (496)
                      ...+.++|+|++..+++++-
T Consensus       204 ~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          204 DVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             SCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEcCCCCEEEEECC
Confidence            35688999999888888653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.30  E-value=4.3e-05  Score=75.55  Aligned_cols=168  Identities=13%  Similarity=0.102  Sum_probs=101.8

Q ss_pred             ceeEEEE-c-cCCCceEEEE-----------------cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEE
Q 010997          280 TVEDVTF-C-PSSAQEFCSV-----------------GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLIL  340 (496)
Q Consensus       280 ~v~~l~~-~-~~~~~~l~s~-----------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~  340 (496)
                      ....+++ + |++..+++++                 -.++.+.+.|..+.+  ......... ....++++| ++.+++
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~--v~~qI~Vgg-~pd~~~~sp-dGk~~~  210 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWE--VAWQVLVSG-NLDNCDADY-EGKWAF  210 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTE--EEEEEEESS-CCCCEEECS-SSSEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCe--EEEEEEeCC-CccceEECC-CCCEEE
Confidence            4567776 4 7774444442                 345689999998765  333332212 345677888 777777


Q ss_pred             EEcCCC--------------------------------------cEEEEeCCCCCCCCCCCC-ceEeccCCCCEEEEEEc
Q 010997          341 TGSADN--------------------------------------SVRMFDRRNLTSNGVGSP-INKFEGHSAAVLCVQWS  381 (496)
Q Consensus       341 sgs~dg--------------------------------------~i~iwd~~~~~~~~~~~~-~~~~~~h~~~i~~l~~s  381 (496)
                      +.+.+.                                      .|.+.|.++..    +.. +..+.. .....++.++
T Consensus       211 vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~----~~~~~~~Ipv-g~~PhGv~~s  285 (595)
T 1fwx_A          211 STSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA----SSLFTRYIPI-ANNPHGCNMA  285 (595)
T ss_dssp             EEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG----CCSSEEEEEE-ESSCCCEEEC
T ss_pred             EEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC----CceeEEEEec-CCCceEEEEc
Confidence            776443                                      36666666411    122 333432 2345689999


Q ss_pred             CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCe
Q 010997          382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGT  461 (496)
Q Consensus       382 p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~  461 (496)
                      |||+++++++..+..|.++|+.+........   . .+...+.....-......++|+|+| ++.++.--       |+.
T Consensus       286 PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~---l-~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l-------dsq  353 (595)
T 1fwx_A          286 PDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN---A-DPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL-------DSQ  353 (595)
T ss_dssp             TTSSEEEEECTTSSBEEEEEGGGHHHHHHSC---C-CGGGGEEECCBCCSCEEEEEECTTS-EEEEEETT-------TTE
T ss_pred             CCCCEEEEeCCCCCeEEEEECcccccccccc---c-CcccceEEEcCCCCCcceEEECCCC-eEEEEEec-------CCc
Confidence            9999999888889999999998631100000   0 0011111111223457889999999 76665544       599


Q ss_pred             EEEeecC
Q 010997          462 LQIWRMS  468 (496)
Q Consensus       462 i~iw~~~  468 (496)
                      |.+|++.
T Consensus       354 V~kwdi~  360 (595)
T 1fwx_A          354 VVKWNIE  360 (595)
T ss_dssp             EEEEEHH
T ss_pred             EEEEEhh
Confidence            9999987

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.29  E-value=0.0019  Score=59.76  Aligned_cols=207  Identities=8%  Similarity=-0.025  Sum_probs=126.2

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGK  216 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~  216 (496)
                      .....+..++|.+.++.++.+-...+.|..+++......        ......+...-. ...++++.+.+. ++++-..
T Consensus        27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--------~~~~~~~~~~~~-~p~glavd~~~~~ly~~d~~   97 (316)
T 1ijq_A           27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTDSV   97 (316)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CCCEEEEETTTTEEEEEETT
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC--------cccEEEEeCCCC-CcCEEEEeecCCeEEEEECC
Confidence            344567899999866777777777889999998762000        011112222112 246888886544 4455566


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      .+.|.+.+++.....                                        ..+........++++.|.+..++++
T Consensus        98 ~~~I~~~~~~g~~~~----------------------------------------~~~~~~~~~P~~iavdp~~g~ly~~  137 (316)
T 1ijq_A           98 LGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMYWT  137 (316)
T ss_dssp             TTEEEEEETTSSSEE----------------------------------------EEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCCCCceE----------------------------------------EEEECCCCCcceEEeCCCCCEEEEE
Confidence            789999887632110                                        1112223456899999876566666


Q ss_pred             EcCC-CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---cCC
Q 010997          297 VGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHS  372 (496)
Q Consensus       297 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~  372 (496)
                      .... +.|...++....  ........-...+.|+++|..+.++++-+..+.|..+|+..       .....+.   ..-
T Consensus       138 d~~~~~~I~~~~~dG~~--~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-------~~~~~~~~~~~~~  208 (316)
T 1ijq_A          138 DWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRL  208 (316)
T ss_dssp             ECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEEECTTTT
T ss_pred             ccCCCCeEEEEcCCCCC--eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-------CceEEEeecCCcc
Confidence            5444 788888875433  11122223456789999984455556666778999999874       2233332   123


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      .....+++.  +..++++-...+.|..++...
T Consensus       209 ~~P~giav~--~~~ly~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          209 AHPFSLAVF--EDKVFWTDIINEAIFSANRLT  238 (316)
T ss_dssp             SSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             CCcEEEEEE--CCEEEEEECCCCeEEEEeCCC
Confidence            456788885  345777777788999998755

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.26  E-value=0.00022  Score=65.85  Aligned_cols=198  Identities=13%  Similarity=0.043  Sum_probs=117.2

Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  278 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  278 (496)
                      ..+++|+++++++++-..++.|..||......                                         . .....
T Consensus        34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------------------------------------~-~~~~~   71 (306)
T 2p4o_A           34 LENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------------------------------------I-HATVE   71 (306)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------------------------------------E-EEECS
T ss_pred             cceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------------------------------------E-EEeCC
Confidence            57899999998777777789999998764211                                         1 11122


Q ss_pred             CceeEEEEccCCCceEEEEcCC--CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDD--SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                      ..+..+++.+++ +++++....  ..|..+|..+++....... ........++..+ ++..+++-..++.|..+|....
T Consensus        72 ~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           72 GKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             SEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTT
T ss_pred             CCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCC
Confidence            457899999998 555554332  2466777766652111111 1223345555555 5555666656889999997641


Q ss_pred             CCCCCCCCce--------EeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecC
Q 010997          357 TSNGVGSPIN--------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAG  428 (496)
Q Consensus       357 ~~~~~~~~~~--------~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (496)
                      .    .....        .....-.....+  +|++.+|+++-...+.|..|++...+..         .....+...  
T Consensus       149 ~----~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~---------~~~~~~~~~--  211 (306)
T 2p4o_A          149 S----GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP---------GEPEIFVEQ--  211 (306)
T ss_dssp             E----EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB---------CCCEEEEES--
T ss_pred             c----EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC---------CccEEEecc--
Confidence            0    01100        000111234556  8888888888888899999998752111         111222221  


Q ss_pred             CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          429 HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       429 h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                        .....+++.++|. ++++...       .+.|.+++..
T Consensus       212 --~~P~gi~vd~dG~-l~va~~~-------~~~V~~~~~~  241 (306)
T 2p4o_A          212 --TNIDDFAFDVEGN-LYGATHI-------YNSVVRIAPD  241 (306)
T ss_dssp             --CCCSSEEEBTTCC-EEEECBT-------TCCEEEECTT
T ss_pred             --CCCCCeEECCCCC-EEEEeCC-------CCeEEEECCC
Confidence              3467889999885 4554332       3789999876

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.26  E-value=6.8e-05  Score=77.35  Aligned_cols=74  Identities=14%  Similarity=0.150  Sum_probs=48.7

Q ss_pred             EEEecCCCCcEEEEEeCCC-----------cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          145 RIRELPQNTKIVATHTDSP-----------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       145 ~l~~~p~~~~~lat~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      .+++.|.++++++.|+.+.           .+.+||..+..          ......+.........++++.++++.++.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~----------w~~~~~~~~~~~~~~~~~~~~~~g~lyv~  259 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI----------VSDRTVTVTKHDMFCPGISMDGNGQIVVT  259 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC----------BCCCEEEECSCCCSSCEEEECTTSCEEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc----------EEeCcccCCCCCCccccccCCCCCCEEEe
Confidence            5566665778888887643           58899988772          23333333322212335677788998999


Q ss_pred             ecC-CCcEEEEecCCc
Q 010997          214 GGK-DKSVVLWSIQDH  228 (496)
Q Consensus       214 g~~-Dg~i~iwd~~~~  228 (496)
                      |+. +..+.+||..+.
T Consensus       260 GG~~~~~v~~yd~~t~  275 (656)
T 1k3i_A          260 GGNDAKKTSLYDSSSD  275 (656)
T ss_dssp             CSSSTTCEEEEEGGGT
T ss_pred             CCCCCCceEEecCcCC
Confidence            884 568999998754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.23  E-value=0.00054  Score=63.50  Aligned_cols=183  Identities=5%  Similarity=-0.024  Sum_probs=115.8

Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAK  240 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~  240 (496)
                      ...|+..++.....          .....+.+-.  ...+++|.+.+. ++.+-...+.|..++++.....         
T Consensus        12 ~~~I~~i~l~~~~~----------~~~~~~~~~~--~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~---------   70 (318)
T 3sov_A           12 RRDLRLVDATNGKE----------NATIVVGGLE--DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---------   70 (318)
T ss_dssp             EEEEEEEETTCTTS----------CCEEEEEEEE--EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC---------
T ss_pred             cCeEEEEECCCCce----------EEEEEecCCC--ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce---------
Confidence            35789999876520          1112223322  246899998644 5556566788888887643110         


Q ss_pred             cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec
Q 010997          241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  320 (496)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  320 (496)
                                                    ...+.........+++.+.+..++++-...+.|.++++....  ......
T Consensus        71 ------------------------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~l~~  118 (318)
T 3sov_A           71 ------------------------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFW  118 (318)
T ss_dssp             ------------------------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEEC
T ss_pred             ------------------------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc--EEEEEe
Confidence                                          011222223467888887665777887788899999987544  222222


Q ss_pred             cCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997          321 AHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN  398 (496)
Q Consensus       321 ~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~  398 (496)
                      ........++++|..+.++.+-. ..+.|...++..       .....+ ...-.....|+|+|++..|+.+-+..+.|.
T Consensus       119 ~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~  191 (318)
T 3sov_A          119 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-------SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  191 (318)
T ss_dssp             SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-------CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-------CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence            44466789999984444445442 357888888763       333333 222345789999998887887777788999


Q ss_pred             EEECCC
Q 010997          399 IWDYEK  404 (496)
Q Consensus       399 iwd~~~  404 (496)
                      .+|+..
T Consensus       192 ~~d~dG  197 (318)
T 3sov_A          192 KSNLDG  197 (318)
T ss_dssp             EEETTS
T ss_pred             EEcCCC
Confidence            999875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.19  E-value=0.0039  Score=59.77  Aligned_cols=209  Identities=9%  Similarity=-0.017  Sum_probs=127.8

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEec
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGG  215 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~  215 (496)
                      +.....+..++|.+.++.++.+-...+.|+.+++......        ......+..... ...+|++.+. ++++++-.
T Consensus       108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~--------~~~~~~~~~~~~-~p~glavD~~~~~lY~~d~  178 (400)
T 3p5b_L          108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTDS  178 (400)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CCCEEEECSSCS-CEEEEEEETTTTEEEEEET
T ss_pred             ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--------CcceEEEeCCCC-CcccEEEEecCCceEEEEC
Confidence            4456678999999867777777777889999998753100        011122221222 3468888874 44555656


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      ..+.|.+.+++.....                                        ..+........+|++.|.++.+++
T Consensus       179 ~~~~I~~~~~~g~~~~----------------------------------------~l~~~~~~~P~~iavdp~~g~ly~  218 (400)
T 3p5b_L          179 VLGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMYW  218 (400)
T ss_dssp             TTTEEEEECTTTCSEE----------------------------------------EEEECSSCCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEeCCCCceE----------------------------------------EEEeCCCCCcceEEEecccCeEEE
Confidence            6788888887642210                                        112223345789999997656666


Q ss_pred             EEcC-CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-c--cC
Q 010997          296 SVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-E--GH  371 (496)
Q Consensus       296 s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~--~h  371 (496)
                      +-.. .+.|...++....  ........-...+.|+++|..+.+.++-+..+.|..+|+..       .....+ .  ..
T Consensus       219 td~~~~~~I~~~~~dG~~--~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~  289 (400)
T 3p5b_L          219 TDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKR  289 (400)
T ss_dssp             EECSSSCCEEEEETTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CCCEEEEECSST
T ss_pred             EeCCCCCEEEEEeCCCCc--cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC-------CccEEEEeCCCC
Confidence            6533 4788888886544  22222233457899999984455555556678899999874       223333 2  12


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      -.....|++.  +..++.+....+.|..+|..++
T Consensus       290 l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          290 LAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             TSSEEEEEEE--TTEEEEEESSSCSEEEEESSSC
T ss_pred             CCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCC
Confidence            3445677773  4457778877889999986553

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.17  E-value=0.00092  Score=69.70  Aligned_cols=184  Identities=5%  Similarity=-0.049  Sum_probs=116.2

Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAK  240 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~  240 (496)
                      ...|+..++...            .....+.+..  .+.+|+|.+.+. ++++-...+.|..+++......         
T Consensus       403 ~~~Ir~i~l~~~------------~~~~l~~~~~--~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---------  459 (791)
T 3m0c_C          403 RHEVRKMTLDRS------------EYTSLIPNLR--NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------  459 (791)
T ss_dssp             BSSEEEECTTSC------------CCEEEECSCS--SEEEEEEETTTTEEEEEETTTTEEEEEEC---------------
T ss_pred             ccceeEeeccCC------------cceeeecCCC--ceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---------
Confidence            346777777654            2222333333  357899988544 4555566788888887642100         


Q ss_pred             cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec
Q 010997          241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  320 (496)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  320 (496)
                                                 ......+.........|++.+.+.+++++-...+.|.+.++....  ......
T Consensus       460 ---------------------------~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~--~~~l~~  510 (791)
T 3m0c_C          460 ---------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFR  510 (791)
T ss_dssp             -----------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEE
T ss_pred             ---------------------------cceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe--EEEEEe
Confidence                                       000122222344567889988776788888888999999987554  222222


Q ss_pred             cCCCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEec-cCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997          321 AHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLN  398 (496)
Q Consensus       321 ~~~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~llas~~~dg~i~  398 (496)
                      ........|+++|..+.++++-... +.|...++..       .....+. ..-.....|++++.+..|+++-...+.|.
T Consensus       511 ~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-------~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~  583 (791)
T 3m0c_C          511 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  583 (791)
T ss_dssp             CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-------CceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence            3445688999999445555554333 7888888874       3343333 23357889999988887887766678899


Q ss_pred             EEECCC
Q 010997          399 IWDYEK  404 (496)
Q Consensus       399 iwd~~~  404 (496)
                      ..++..
T Consensus       584 ~~d~dG  589 (791)
T 3m0c_C          584 SIDVNG  589 (791)
T ss_dssp             EEETTS
T ss_pred             EEecCC
Confidence            999865

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.17  E-value=0.00021  Score=66.50  Aligned_cols=114  Identities=13%  Similarity=0.051  Sum_probs=72.8

Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC----------CCcEE
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA----------DNSVR  349 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~----------dg~i~  349 (496)
                      ....|+|+|++..++++-...+.|.+|++..........+..... ...+++++ ++++.++...          .+.|.
T Consensus       186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~  263 (322)
T 2fp8_A          186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGI  263 (322)
T ss_dssp             CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred             cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCccEEE
Confidence            356789999984456666777899999987532111122211223 78899999 7877666544          46688


Q ss_pred             EEeCCCCCCCCCCCCceEeccCC----CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          350 MFDRRNLTSNGVGSPINKFEGHS----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       350 iwd~~~~~~~~~~~~~~~~~~h~----~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      .+|..       +..+..+....    ..++.+++. ++ .|+++....+.|.++++..
T Consensus       264 ~~d~~-------G~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          264 KFDEF-------GNILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EECTT-------SCEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC--
T ss_pred             EECCC-------CCEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEeccc
Confidence            88764       45565554332    346667663 44 4777777788999999875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.14  E-value=7.5e-05  Score=77.01  Aligned_cols=176  Identities=10%  Similarity=0.090  Sum_probs=88.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEEecC------CCcEEEEec
Q 010997          154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGGK------DKSVVLWSI  225 (496)
Q Consensus       154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~sg~~------Dg~i~iwd~  225 (496)
                      ..|+.++.|+.|..+|..++.            .+..+..........+.-.|  .+..++.+..      +|.|..+|.
T Consensus       118 ~~v~v~~~dg~l~alD~~tG~------------~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~  185 (668)
T 1kv9_A          118 DKVYVGTLDGRLIALDAKTGK------------AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDA  185 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCC------------EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred             CEEEEEcCCCEEEEEECCCCC------------EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEEC
Confidence            467778889999999999883            22232221100011111122  1334444432      589999999


Q ss_pred             CCccccccCCcccc-ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC---
Q 010997          226 QDHITSSATDPATA-KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS---  301 (496)
Q Consensus       226 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---  301 (496)
                      .+++.......... ............       ....+.   ......+.++......+++.|.. .+++.++.++   
T Consensus       186 ~tG~~~W~~~~~~~~p~~~~~~~~~~~-------~~~~~~---g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w  254 (668)
T 1kv9_A          186 DTGKLAWRFYTVPGDPALPYEHPELRE-------AAKTWQ---GDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPW  254 (668)
T ss_dssp             TTCCEEEEEESSCCCTTSCCSSHHHHH-------HHTTCC---SSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESS
T ss_pred             CCCcEEEEecccCCCCCcccccccccc-------ccccCC---ccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCcc
Confidence            98876554332100 000000000000       000000   00000001122223456787776 5677776665   


Q ss_pred             ----------------eEEEEEccCCCccceeeecc--CC-------CCeEEEEecCCCCc---EEEEEcCCCcEEEEeC
Q 010997          302 ----------------CLILWDARVGTSPVIKVEKA--HD-------ADLHCVDWNPLDDN---LILTGSADNSVRMFDR  353 (496)
Q Consensus       302 ----------------~i~iwd~~~~~~~~~~~~~~--~~-------~~v~~i~~sp~~~~---~l~sgs~dg~i~iwd~  353 (496)
                                      .|..+|.++++  ....+..  |.       .++....+.. ++.   .++.++.+|.+.++|.
T Consensus       255 ~~~~~~~~~gd~l~~~~v~AlD~~tG~--~~W~~~~~~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~  331 (668)
T 1kv9_A          255 NREVRSPGGGDNLYLSSILAIRPDTGK--LAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDR  331 (668)
T ss_dssp             CHHHHSTTCCCCTTTTEEEEECTTTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEET
T ss_pred             ccCCCCCCCCCceeeeeEEEEcCCCCc--eeeEeecCCCccccccCCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEEC
Confidence                            49999999988  3333322  22       2222222222 443   6889999999999999


Q ss_pred             CC
Q 010997          354 RN  355 (496)
Q Consensus       354 ~~  355 (496)
                      .+
T Consensus       332 ~t  333 (668)
T 1kv9_A          332 TN  333 (668)
T ss_dssp             TT
T ss_pred             CC
Confidence            88

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.13  E-value=1.4e-05  Score=82.63  Aligned_cols=115  Identities=4%  Similarity=-0.054  Sum_probs=74.8

Q ss_pred             eeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-CcEEEEeCCCCCCC
Q 010997          281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-NSVRMFDRRNLTSN  359 (496)
Q Consensus       281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~  359 (496)
                      ...|++.+.+..++++-...+.|.++++....  ..............|+++|..+.++++-... +.|..+++..    
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~--~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG----  528 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----  528 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC--EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS----
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCc--eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC----
Confidence            45677776554677776777899999987554  2222222234567889998445555544333 7788887764    


Q ss_pred             CCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          360 GVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       360 ~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                         .....+ ...-.....|+|+|++..|+++-+..+.|.++++..
T Consensus       529 ---~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          529 ---VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             ---CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred             ---CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence               222222 122234678999998888887877788999999865

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.12  E-value=0.004  Score=57.58  Aligned_cols=201  Identities=6%  Similarity=-0.024  Sum_probs=126.3

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-CCceEEecCCCcE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-EPYVLSGGKDKSV  220 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-~~~l~sg~~Dg~i  220 (496)
                      .+..++|.+.++.++.+-...+.|..+++.....           ....+...-. ...++++.+. ++++++-...+.|
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-----------~~~~~~~~l~-~p~glavd~~~g~ly~~d~~~~~I  103 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-----------VQNVVVSGLL-SPDGLACDWLGEKLYWTDSETNRI  103 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-----------CCEEEEECCS-CCCEEEEETTTTEEEEEETTTTEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-----------eEEEEcCCCC-CccEEEEEcCCCeEEEEECCCCEE
Confidence            4678899986777777777788999999876511           1111222112 2467888875 4455565667889


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE-cC
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV-GD  299 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~~  299 (496)
                      .+++++.....                                        ..+........++++.|.++.++++- +.
T Consensus       104 ~~~~~dG~~~~----------------------------------------~l~~~~~~~P~giavdp~~g~ly~td~~~  143 (318)
T 3sov_A          104 EVSNLDGSLRK----------------------------------------VLFWQELDQPRAIALDPSSGFMYWTDWGE  143 (318)
T ss_dssp             EEEETTSCSCE----------------------------------------EEECSSCSSEEEEEEEGGGTEEEEEECSS
T ss_pred             EEEECCCCcEE----------------------------------------EEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence            99987642110                                        11112334568999998764555554 23


Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEE
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCV  378 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l  378 (496)
                      .+.|...++....  ........-...+.|+++|.++.+.++=+..+.|..+|+..       .....+ .+.......+
T Consensus       144 ~~~I~r~~~dG~~--~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~~P~gl  214 (318)
T 3sov_A          144 VPKIERAGMDGSS--RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-------TNRQAVVKGSLPHPFAL  214 (318)
T ss_dssp             SCEEEEEETTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEECSCCSCEEEE
T ss_pred             CCEEEEEEcCCCC--eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-------CceEEEecCCCCCceEE
Confidence            6788888876433  22222223356789999984555666666778999999874       222322 2234556788


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          379 QWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       379 ~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ++..  ..++.+-...+.|..++..++
T Consensus       215 av~~--~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          215 TLFE--DILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             EEET--TEEEEEETTTTEEEEEETTTC
T ss_pred             EEeC--CEEEEEecCCCeEEEEECCCC
Confidence            8753  347777777889999998653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.03  E-value=0.0022  Score=62.17  Aligned_cols=157  Identities=5%  Similarity=-0.009  Sum_probs=92.3

Q ss_pred             ceeEEEecC-CCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC-CC-
Q 010997          142 EVNRIRELP-QNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DK-  218 (496)
Q Consensus       142 ~V~~l~~~p-~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-Dg-  218 (496)
                      ....|+++| .++.++++-.. +.|+.+|+...            .. ..+..... ....|+|++++++|+.+.. ++ 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~------------~v-~~~~~~~~-~P~~ia~d~~G~~lyvad~~~~~  202 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKE------------YV-STVYSGLS-KVRTICWTHEADSMIITNDQNNN  202 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTT------------EE-EEEECCCS-CEEEEEECTTSSEEEEEECCSCT
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCC------------EE-EEEecCCC-CcceEEEeCCCCEEEEEeCCCCc
Confidence            456788887 35555554443 78888988765            11 12222222 3579999999995555443 22 


Q ss_pred             ---cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          219 ---SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       219 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                         .+.+.+.. +...                                      ....+.. .....+++++|++..+++
T Consensus       203 ~~~~v~~~~~~-g~~~--------------------------------------~~~~l~~-~~~p~giavdp~~g~lyv  242 (430)
T 3tc9_A          203 DRPNNYILTRE-SGFK--------------------------------------VITELTK-GQNCNGAETHPINGELYF  242 (430)
T ss_dssp             TSEEEEEEEGG-GTSC--------------------------------------SEEEEEE-CSSCCCEEECTTTCCEEE
T ss_pred             ccceEEEEeCC-Ccee--------------------------------------eeeeecc-CCCceEEEEeCCCCEEEE
Confidence               23223322 1100                                      0011111 234567889994437777


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCC
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRN  355 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~  355 (496)
                      +-..++.|..+|........... .......+.|+|+| +++ ++++-...+.|..++...
T Consensus       243 ~d~~~~~V~~~~~~~~~~~~~~~-~~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          243 NSWNAGQVFRYDFTTQETTPLFT-IQDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEE-CSSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred             EECCCCEEEEEECCCCcEEEEEE-cCCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCCc
Confidence            77788999999987654211111 12224578999999 787 556666778999988763

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.01  E-value=0.00026  Score=74.08  Aligned_cols=158  Identities=15%  Similarity=0.066  Sum_probs=90.5

Q ss_pred             cceeeeec-CCCCceEEec-CC----CcEEEEecCCc-cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997          198 AEFALAMC-PTEPYVLSGG-KD----KSVVLWSIQDH-ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  270 (496)
Q Consensus       198 ~v~~l~~~-p~~~~l~sg~-~D----g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (496)
                      .+...+|+ |||++|+-+. .+    .+|+++|+.++ ...    .                                  
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l----~----------------------------------  216 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI----A----------------------------------  216 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC----C----------------------------------
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC----C----------------------------------
Confidence            35678999 9999877433 22    35999999865 310    0                                  


Q ss_pred             eeeeecCCCceeEEEEccCCCceEEEEcCC-----CeEEEEEccCCCccceeeec-cCCCCeEEEEecCCCCcEEEEEcC
Q 010997          271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDD-----SCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~sgs~  344 (496)
                       ..+..   ...++.|+|++..++++ ..|     ..|.++++.++.......+. ........+.|+| ++.+|+..+.
T Consensus       217 -~~~~~---~~~~~~WspDg~~l~y~-~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~  290 (751)
T 2xe4_A          217 -DKVSG---TNGEIVWGPDHTSLFYV-TKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-DTNTLCIGSQ  290 (751)
T ss_dssp             -CCEEE---ECSCCEECSSTTEEEEE-EECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-TSSEEEEEEE
T ss_pred             -ccccC---ceeeEEEecCCCEEEEE-EECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC-CCCEEEEEec
Confidence             01111   13468899999544444 443     35778888765422122222 2334567889999 8887776553


Q ss_pred             ---CCcEEEEeCCCCCCCCCCCC-ceEe-ccCCCCEEEEEEcCCCCCEEEEEeCC----CcEEEEECCC
Q 010997          345 ---DNSVRMFDRRNLTSNGVGSP-INKF-EGHSAAVLCVQWSPDKSSVFGSSAED----GLLNIWDYEK  404 (496)
Q Consensus       345 ---dg~i~iwd~~~~~~~~~~~~-~~~~-~~h~~~i~~l~~sp~~~~llas~~~d----g~i~iwd~~~  404 (496)
                         ...|.++|+....    ... +..+ ........++.|+. +..|++....+    ..|..+|+..
T Consensus       291 ~~~~~~l~~~d~~~~~----~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          291 SPETAEVHLLDLRKGN----AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CSSCEEEEEEESSSCT----TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCceEEEEECCCCC----CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence               3468888987621    122 1333 23345556666654 44455555444    3566666653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.00  E-value=0.006  Score=59.10  Aligned_cols=201  Identities=9%  Similarity=0.049  Sum_probs=112.1

Q ss_pred             ceeEEEecCC--CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC--
Q 010997          142 EVNRIRELPQ--NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD--  217 (496)
Q Consensus       142 ~V~~l~~~p~--~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D--  217 (496)
                      ....|++.|+  ++.++++-.. +.|+.+|..++.            . ..+..... ...+++++++++++++....  
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~------------v-~~~~~~~~-~P~giavd~dG~lyVad~~~~~  204 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQY------------V-DIKTTNIG-QCADVNFTLNGDMVVVDDQSSD  204 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTE------------E-EEECCCCS-CEEEEEECTTCCEEEEECCSCT
T ss_pred             CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCE------------E-EEeecCCC-CccEEEECCCCCEEEEcCCCCc
Confidence            4568888883  4555555443 789999986651            1 12222222 35799999999944444311  


Q ss_pred             -Cc-EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          218 -KS-VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       218 -g~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                       .. +...+......                                    .   ...+. .......++++|.+..+++
T Consensus       205 ~~~gv~~~~~~~~~~------------------------------------~---~~~~~-~~~~P~giavd~~~G~lyv  244 (433)
T 4hw6_A          205 TNTGIYLFTRASGFT------------------------------------E---RLSLC-NARGAKTCAVHPQNGKIYY  244 (433)
T ss_dssp             TSEEEEEECGGGTTC------------------------------------C---EEEEE-ECSSBCCCEECTTTCCEEE
T ss_pred             ccceEEEEECCCCee------------------------------------c---ccccc-ccCCCCEEEEeCCCCeEEE
Confidence             11 22222111000                                    0   01111 2234567889994436777


Q ss_pred             EEcCCCeEEEEEccCCCccceeeec-cCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC--
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH--  371 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h--  371 (496)
                      +-..++.|+.+|..++... ..... .....-..++|+| +++ ++++-...+.|..+|+......  ......+.+.  
T Consensus       245 ~d~~~~~V~~~d~~~g~~~-~~~~~~~~~~~~~~ia~dp-dG~~LYvad~~~~~I~~~~~d~~~~~--~~~~~~~ag~~g  320 (433)
T 4hw6_A          245 TRYHHAMISSYDPATGTLT-EEEVMMDTKGSNFHIVWHP-TGDWAYIIYNGKHCIYRVDYNRETGK--LAVPYIVCGQHS  320 (433)
T ss_dssp             CBTTCSEEEEECTTTCCEE-EEEEECSCCSSCEEEEECT-TSSEEEEEETTTTEEEEEEBCTTTCC--BCCCEEEEECTT
T ss_pred             EECCCCEEEEEECCCCeEE-EEEeccCCCCCcccEEEeC-CCCEEEEEeCCCCEEEEEeCCCCCcc--cCcEEEEEecCC
Confidence            7777889999998766520 11111 1222335799999 777 5566666789999887631100  0001112111  


Q ss_pred             -------------CCCEEEEEE---------cCCCCCEEEEEeCCCcEEEEEC
Q 010997          372 -------------SAAVLCVQW---------SPDKSSVFGSSAEDGLLNIWDY  402 (496)
Q Consensus       372 -------------~~~i~~l~~---------sp~~~~llas~~~dg~i~iwd~  402 (496)
                                   -.....+++         .+++. |+++-...+.|+.++.
T Consensus       321 ~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          321 SPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             CCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECT
T ss_pred             CCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECC
Confidence                         123677999         56665 6767667788999885

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.98  E-value=0.006  Score=63.61  Aligned_cols=210  Identities=9%  Similarity=-0.014  Sum_probs=128.2

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEe
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSG  214 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg  214 (496)
                      ++.....+..|+|.+.++.++.+-...+.|+.+++......        ......+..... ...+|++.+.++ ++++-
T Consensus       419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~--------~~~~~vi~~~l~-~P~GLAvD~~~~~LY~tD  489 (791)
T 3m0c_C          419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--------SSYDTVISRDIQ-APDGLAVDWIHSNIYWTD  489 (791)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CCCEEEEETTTTEEEEEE
T ss_pred             eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC--------cceeEEEecCCC-CcceeeeeecCCcEEEEe
Confidence            34455677889999867777777777788999988753110        011222222222 346888887764 55565


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      ...+.|.+.+++.....                                        ..+........+|++.|.++.++
T Consensus       490 ~~~~~I~v~~ldG~~~~----------------------------------------~l~~~~l~~P~gIaVDp~~g~LY  529 (791)
T 3m0c_C          490 SVLGTVSVADTKGVKRK----------------------------------------TLFRENGSKPRAIVVDPVHGFMY  529 (791)
T ss_dssp             TTTTEEEEEETTSSSEE----------------------------------------EEEECTTCCEEEEEEETTTTEEE
T ss_pred             cCCCeEEEEeCCCCeEE----------------------------------------EEEeCCCCCcceEEEecCCCCEE
Confidence            66789999888642210                                        11222334578999999865666


Q ss_pred             EEEcCC-CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-cc--
Q 010997          295 CSVGDD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EG--  370 (496)
Q Consensus       295 ~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~--  370 (496)
                      ++-... +.|...++....  ........-...+.|++++..+.++++-...+.|..+|+..       .....+ ..  
T Consensus       530 wtD~g~~~~I~~~~~dG~~--~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-------~~~~~v~~~~~  600 (791)
T 3m0c_C          530 WTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEK  600 (791)
T ss_dssp             EEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEEECTT
T ss_pred             EecCCCCCeEEEEecCCCc--eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-------CceEEEecCCC
Confidence            665333 789988886544  22233333467899999984555666656677899999874       333333 21  


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      .-.....|++.  +.+|+++-...+.|...|...+
T Consensus       601 ~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          601 RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC
Confidence            22345577764  3457877777788888886553

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.93  E-value=0.00073  Score=69.63  Aligned_cols=74  Identities=16%  Similarity=0.108  Sum_probs=46.1

Q ss_pred             eeEEEecCCCCcEEEEEeC-CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec-CC---
Q 010997          143 VNRIRELPQNTKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KD---  217 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~-~D---  217 (496)
                      ...+++.+ ++++++.|+. +..+.+||..+..-.          ....+  +....-.+++..++++.++.|+ .+   
T Consensus       245 ~~~~~~~~-~g~lyv~GG~~~~~v~~yd~~t~~W~----------~~~~~--~~~R~~~s~~~~~dg~iyv~GG~~~~~~  311 (656)
T 1k3i_A          245 CPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWI----------PGPDM--QVARGYQSSATMSDGRVFTIGGSWSGGV  311 (656)
T ss_dssp             SCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEE----------ECCCC--SSCCSSCEEEECTTSCEEEECCCCCSSS
T ss_pred             cccccCCC-CCCEEEeCCCCCCceEEecCcCCcee----------ECCCC--CccccccceEEecCCeEEEEeCcccCCc
Confidence            33466667 7888888884 558999998765211          11111  1111123456667889888888 44   


Q ss_pred             --CcEEEEecCCcc
Q 010997          218 --KSVVLWSIQDHI  229 (496)
Q Consensus       218 --g~i~iwd~~~~~  229 (496)
                        ..+.+||..+..
T Consensus       312 ~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          312 FEKNGEVYSPSSKT  325 (656)
T ss_dssp             CCCCEEEEETTTTE
T ss_pred             ccccceEeCCCCCc
Confidence              578999987643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.91  E-value=0.017  Score=60.82  Aligned_cols=250  Identities=8%  Similarity=0.061  Sum_probs=142.8

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  220 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i  220 (496)
                      ..|.++...+ ++.+.+ |+.+ -|.+||..+...........  .    ..+-....|.++...++|. |-.|+.++-|
T Consensus       263 ~~i~~i~~d~-~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~--~----~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl  332 (795)
T 4a2l_A          263 NYIRSLAMDS-QNRLWI-GTFN-DLNIYHEGTDSFASYSSNPV--E----NGSLSQRSVRSIFMDSQGG-MWLGTYFGGL  332 (795)
T ss_dssp             SBEEEEEECT-TSCEEE-EESS-CEEEEETTTTEEEEECCCTT--S----TTSCSSSCEEEEEECTTSC-EEEEESSSCE
T ss_pred             CeEEEEEEcC-CCCEEE-EeCC-hhheEcCCCCeEEEEecCCC--C----CCCCCCCcEEEEEEeCCcC-EEEEECCCCe
Confidence            5689998877 555443 4455 58889976652110000000  0    0011123588998888776 5556667788


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  300 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  300 (496)
                      ..++..+.........                             ...   ..  -....|.++...+++  .|..|+.+
T Consensus       333 ~~~~~~~~~~~~~~~~-----------------------------~~~---~~--l~~~~V~~i~~d~~g--~lWiGt~~  376 (795)
T 4a2l_A          333 NYYHPIRNRFKNIRNI-----------------------------PYK---NS--LSDNVVSCIVEDKDK--NLWIGTND  376 (795)
T ss_dssp             EEECGGGGSSEEECCC-----------------------------TTS---SS--CSCSSEEEEEECTTS--CEEEEESS
T ss_pred             EEeCCCcccceEEcCC-----------------------------CCC---CC--CCCCeeEEEEECCCC--CEEEEECC
Confidence            8888764322110000                             000   00  023468888888777  36667778


Q ss_pred             CeEEEEEccCCCccceeeec--------cCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---
Q 010997          301 SCLILWDARVGTSPVIKVEK--------AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---  369 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~~--------~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---  369 (496)
                      +-|..||..++.  ......        .....|.++...+ ++.+|..|+.++-|.+||..+      +. +..+.   
T Consensus       377 ~Gl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~------~~-~~~~~~~~  446 (795)
T 4a2l_A          377 GGLNLYNPITQR--FTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNS------GQ-VENFNQRN  446 (795)
T ss_dssp             SCEEEECTTTCC--EEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTT------CC-EEEECTTT
T ss_pred             CCeEEEcCCCCc--EEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCC------Cc-EEEeecCC
Confidence            789999987665  221110        1245789999887 677566777777799999876      22 33332   


Q ss_pred             --cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          370 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       370 --~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                        .....|.++...+++. |. .|+.+ -+.+||.... .........  .+      ..-....|.++...+++...++
T Consensus       447 ~~l~~~~v~~i~~d~~g~-lw-igt~~-Gl~~~~~~~~-~~~~~~~~~--~~------~~~~~~~i~~i~~d~~g~lWig  514 (795)
T 4a2l_A          447 SQLVNENVYAILPDGEGN-LW-LGTLS-ALVRFNPEQR-SFTTIEKEK--DG------TPVVSKQITTLFRDSHKRLWIG  514 (795)
T ss_dssp             SCCSCSCEEEEEECSSSC-EE-EEESS-CEEEEETTTT-EEEECCBCT--TC------CBCCCCCEEEEEECTTCCEEEE
T ss_pred             CCcCCCeeEEEEECCCCC-EE-EEecC-ceeEEeCCCC-eEEEccccc--cc------cccCCceEEEEEECCCCCEEEE
Confidence              2345799999998887 55 34444 5888997653 110000000  00      0112356888888887765553


Q ss_pred             EecCCCCCCCCCCeEEEeecC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      + .         +-|..|+..
T Consensus       515 t-~---------~Gl~~~~~~  525 (795)
T 4a2l_A          515 G-E---------EGLSVFKQE  525 (795)
T ss_dssp             E-S---------SCEEEEEEE
T ss_pred             e-C---------CceEEEeCC
Confidence            3 1         247777765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.85  E-value=0.0003  Score=72.77  Aligned_cols=205  Identities=8%  Similarity=-0.033  Sum_probs=118.0

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEecCCC
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGGKDK  218 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~~Dg  218 (496)
                      ...+..|+|.+..+.++++-...+.|+.+++.......        .....+..... ...+|++.+.+ +++++-...+
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~--------~~~~~i~~~~~-~P~glavD~~~g~LY~tD~~~~  475 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------SYDTVISRDIQ-APDGLAVDWIHSNIYWTDSVLG  475 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C--------CCCCBCCSCC---CCCEECCCSSSBCEECCTTTS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc--------ceEEEEeCCCC-CcceEEEEeeCCcEEEEeccCC
Confidence            34567888988566666665667899999987521000        00111111111 23577777554 4455555678


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      .|.+.++......                                        ..+.........|++.|.+..++++-.
T Consensus       476 ~I~v~d~dg~~~~----------------------------------------~l~~~~~~~P~giavDp~~g~ly~td~  515 (699)
T 1n7d_A          476 TVSVADTKGVKRK----------------------------------------TLFREQGSKPRAIVVDPVHGFMYWTDW  515 (699)
T ss_dssp             CEEEEBSSSCCEE----------------------------------------EECCCSSCCCCCEECCSSSSCCEECCC
T ss_pred             eEEEEecCCCceE----------------------------------------EEEeCCCCCcceEEEccCCCcEEEccc
Confidence            8999887643211                                        011111233567888887655555543


Q ss_pred             CC-CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---cCCCC
Q 010997          299 DD-SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHSAA  374 (496)
Q Consensus       299 ~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~  374 (496)
                      .. +.|..+++.....  .......-...+.|+|+|..+.++++-+..+.|..+|+..       .....+.   ..-..
T Consensus       516 ~~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG-------~~~~~~~~~~~~~~~  586 (699)
T 1n7d_A          516 GTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-------GNRKTILEDEKRLAH  586 (699)
T ss_dssp             SSSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS-------SCCEEECCCSSSCSS
T ss_pred             CCCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC-------CceEEEEecCCcCCC
Confidence            33 7788877754331  1111122345678999985566777777788999999864       2222222   11223


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ...|++..+  .|+++....+.|..+|..+
T Consensus       587 P~glavd~~--~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          587 PFSLAVFED--KVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             CCCCEEETT--EEEEECSTTTCEEEEETTT
T ss_pred             ceEeEEECC--EEEEEeCCCCeEEEEEccC
Confidence            345566443  5777877788999999765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.85  E-value=0.0097  Score=60.56  Aligned_cols=183  Identities=9%  Similarity=-0.013  Sum_probs=117.3

Q ss_pred             CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc-eEEecCCCcEEEEecCCccccccCCcccc
Q 010997          161 DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY-VLSGGKDKSVVLWSIQDHITSSATDPATA  239 (496)
Q Consensus       161 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~-l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~  239 (496)
                      ....|+..++.+....          ....+.+-.  ...+|+|++.+.. +++-..++.|..++++.....        
T Consensus        13 ~~~~I~~i~l~~~~~~----------~~~~~~~~~--~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~--------   72 (628)
T 4a0p_A           13 RRADIRRISLETNNNN----------VAIPLTGVK--EASALDFDVTDNRIYWTDISLKTISRAFMNGSALE--------   72 (628)
T ss_dssp             ETTEEEEEESSCTTCE----------EECCCCSCS--CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--------
T ss_pred             eCCcEEEEECCCCCcc----------eEEEcCCCC--ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--------
Confidence            4458999998765210          011112222  3579999987554 445566788988887642110        


Q ss_pred             ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeee
Q 010997          240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE  319 (496)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  319 (496)
                                                      ..+.........|++.+.+.+++++-...+.|.+.++....  .....
T Consensus        73 --------------------------------~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~--~~~l~  118 (628)
T 4a0p_A           73 --------------------------------HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH--RQVLV  118 (628)
T ss_dssp             --------------------------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT--CEEEE
T ss_pred             --------------------------------EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc--EEEEE
Confidence                                            11111223467888887766777887888999999987554  22222


Q ss_pred             ccCCCCeEEEEecCCCCcEEEEE-cCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997          320 KAHDADLHCVDWNPLDDNLILTG-SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN  398 (496)
Q Consensus       320 ~~~~~~v~~i~~sp~~~~~l~sg-s~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~  398 (496)
                      ...-.....|+++|..+.++.+- +..+.|...++..       .....+...-.....|++++++..|+.+-...+.|.
T Consensus       119 ~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG-------~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~  191 (628)
T 4a0p_A          119 WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDG-------SERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIE  191 (628)
T ss_dssp             CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCC-------CceEEEECCCCCcceEEEccccCEEEEEECCCCEEE
Confidence            23445678999999455555554 2356788888764       333333334556889999998887887777788999


Q ss_pred             EEECCC
Q 010997          399 IWDYEK  404 (496)
Q Consensus       399 iwd~~~  404 (496)
                      .+|+..
T Consensus       192 ~~d~dG  197 (628)
T 4a0p_A          192 SSNMLG  197 (628)
T ss_dssp             EEETTS
T ss_pred             EEcCCC
Confidence            999876

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.82  E-value=0.0017  Score=65.44  Aligned_cols=70  Identities=11%  Similarity=0.109  Sum_probs=39.8

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEEecC------CCcEEEEe
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGGK------DKSVVLWS  224 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~sg~~------Dg~i~iwd  224 (496)
                      +..|+.++.|+.|..+|..++..            ...........-..+.-+|  .+..++.++.      ++.|..+|
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D  182 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKI------------NWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFD  182 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCE------------EEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCE------------EEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEE
Confidence            34677778899999999988832            2222211000001111122  1334555544      79999999


Q ss_pred             cCCccccccC
Q 010997          225 IQDHITSSAT  234 (496)
Q Consensus       225 ~~~~~~~~~~  234 (496)
                      ..+++.....
T Consensus       183 ~~tG~~~W~~  192 (571)
T 2ad6_A          183 LKTGELKWRA  192 (571)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCcEEEEE
Confidence            9988765543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.78  E-value=0.014  Score=61.42  Aligned_cols=245  Identities=7%  Similarity=0.050  Sum_probs=136.0

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEE
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVL  222 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~i  222 (496)
                      |.++...+ ++.+.+ |+.++-|..||..+.....          ... ..+. ..|.++...+++.+.+ |+.++-|.+
T Consensus       175 i~~i~~d~-~g~lwi-gt~~~Gl~~~~~~~~~~~~----------~~~-~~~~-~~i~~i~~d~~g~lwi-gt~~~Gl~~  239 (795)
T 4a2l_A          175 IASTLYRQ-GDQIYI-GTSTDGLYTYSITQKTFEK----------VIP-ILGT-KQIQAILQQSPTRIWV-ATEGAGLFL  239 (795)
T ss_dssp             CEEEEEEE-TTEEEE-EESSSCEEEEETTTCCEEE----------CC-----C-CCEEEEEEEETTEEEE-EEBSSCEEE
T ss_pred             eEEEEECC-CCCEEE-EECCCCEEEEeCCCCeEEE----------ecC-CCCC-CeeEEEEEcCCCCEEE-EECCCCeEE
Confidence            78887777 665555 5555568899977652110          000 0112 2578888877776554 444444888


Q ss_pred             EecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCe
Q 010997          223 WSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSC  302 (496)
Q Consensus       223 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  302 (496)
                      ||..+..........                            ...   .  .-....|.++...+++ . +..|+.+ -
T Consensus       240 ~~~~~~~~~~~~~~~----------------------------~~~---~--~l~~~~i~~i~~d~~g-~-lWigt~~-G  283 (795)
T 4a2l_A          240 INPKTKEIKNYLHSP----------------------------SNP---K--SISSNYIRSLAMDSQN-R-LWIGTFN-D  283 (795)
T ss_dssp             EETTTTEEEEECCCT----------------------------TCT---T--SCSCSBEEEEEECTTS-C-EEEEESS-C
T ss_pred             EeCCCCeEEEeecCC----------------------------CCc---c--ccCCCeEEEEEEcCCC-C-EEEEeCC-h
Confidence            887654321100000                            000   0  0123568899888877 3 4445555 5


Q ss_pred             EEEEEccCCCccceeee-------ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc-----
Q 010997          303 LILWDARVGTSPVIKVE-------KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG-----  370 (496)
Q Consensus       303 i~iwd~~~~~~~~~~~~-------~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~-----  370 (496)
                      |.+||..+..  .....       ......|.++..++ ++. |..|+.++-|..||...       .....+..     
T Consensus       284 l~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~-------~~~~~~~~~~~~~  352 (795)
T 4a2l_A          284 LNIYHEGTDS--FASYSSNPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIR-------NRFKNIRNIPYKN  352 (795)
T ss_dssp             EEEEETTTTE--EEEECCCTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGG-------GSSEEECCCTTSS
T ss_pred             hheEcCCCCe--EEEEecCCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCc-------ccceEEcCCCCCC
Confidence            8889977654  21111       11235799999988 555 55677777799998765       22222221     


Q ss_pred             --CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe-cCCCCCcceEEecCCCC-cEE
Q 010997          371 --HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHRDKVVDFHWNASDP-WTV  446 (496)
Q Consensus       371 --h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~-~l~  446 (496)
                        ....|.++...++|. |. .|+.++-|..||.....-.......        .... .-....|.++...+++. ..+
T Consensus       353 ~l~~~~V~~i~~d~~g~-lW-iGt~~~Gl~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~v~~i~~d~~g~~lWi  422 (795)
T 4a2l_A          353 SLSDNVVSCIVEDKDKN-LW-IGTNDGGLNLYNPITQRFTSYTLQE--------DESARGIGSNNIKAVYVDEKKSLVYI  422 (795)
T ss_dssp             SCSCSSEEEEEECTTSC-EE-EEESSSCEEEECTTTCCEEEECCC--------------CCSCSCEEEEEEETTTTEEEE
T ss_pred             CCCCCeeEEEEECCCCC-EE-EEECCCCeEEEcCCCCcEEEEecCC--------CCcccCCCCccEEEEEEcCCCCEEEE
Confidence              245699999998887 54 6777777999997653110000000        0000 01134688888887666 333


Q ss_pred             EEecCCCCCCCCCCeEEEeecC
Q 010997          447 VSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ++         .++-|.+|+..
T Consensus       423 gt---------~~~Gl~~~d~~  435 (795)
T 4a2l_A          423 GT---------HAGGLSILHRN  435 (795)
T ss_dssp             EE---------TTTEEEEEETT
T ss_pred             Ee---------CcCceeEEeCC
Confidence            22         12557778766

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.78  E-value=0.015  Score=51.39  Aligned_cols=206  Identities=11%  Similarity=0.069  Sum_probs=122.7

Q ss_pred             ecCCCCcceeeeecCCCCceE-EecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC
Q 010997          192 TGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP  270 (496)
Q Consensus       192 ~~h~~~~v~~l~~~p~~~~l~-sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (496)
                      .+-.. .+.+++|+|++..|+ +...++.|...|.. +...                                       
T Consensus        23 ~g~~~-~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~---------------------------------------   61 (255)
T 3qqz_A           23 AGITN-NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI---------------------------------------   61 (255)
T ss_dssp             TTCCS-CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE---------------------------------------
T ss_pred             CCccc-CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE---------------------------------------
Confidence            34444 478999999866444 46668888888876 2211                                       


Q ss_pred             eeeee-cCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc-ceeee------ccCCCCeEEEEecCCCCcEEEEE
Q 010997          271 RGIYN-GHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-VIKVE------KAHDADLHCVDWNPLDDNLILTG  342 (496)
Q Consensus       271 ~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~------~~~~~~v~~i~~sp~~~~~l~sg  342 (496)
                       ..+. +-......|++.+++ .++++.-.++.+.++++...... .....      .........|+|+| .++.|.++
T Consensus        62 -~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va  138 (255)
T 3qqz_A           62 -RTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFF  138 (255)
T ss_dssp             -EEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEE
T ss_pred             -EEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEE
Confidence             1111 112457888998877 56677667788999988665420 01111      12345678999999 56555555


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCCceEec-------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCC
Q 010997          343 SADNSVRMFDRRNLTSNGVGSPINKFE-------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT  415 (496)
Q Consensus       343 s~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~  415 (496)
                      .......||.+.....   ...+..+.       .+...+.+++++|....+++.+...+.+.++|....  .       
T Consensus       139 ~E~~p~~i~~~~g~~~---~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~-------  206 (255)
T 3qqz_A          139 KEKNPIEVYKVNGLLS---SNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--V-------  206 (255)
T ss_dssp             EESSSEEEEEEESTTC---SSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--E-------
T ss_pred             ECcCCceEEEEccccc---CCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--E-------
Confidence            5544455555442100   11222221       123457899999988888888888899999997752  1       


Q ss_pred             CCCCCeeEEEec-CC------CCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          416 TNYPAGLFFQHA-GH------RDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       416 ~~~~~~~~~~~~-~h------~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                           .-...+. +.      -..--.|+|.++|. ++++ |+-       +.++++..
T Consensus       207 -----~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~-------n~~y~f~~  251 (255)
T 3qqz_A          207 -----IGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEP-------NRFYRFTP  251 (255)
T ss_dssp             -----EEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETT-------TEEEEEEC
T ss_pred             -----EEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCC-------ceEEEEEe
Confidence                 1122222 21      12456899999886 5544 333       66666644

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.75  E-value=0.0015  Score=67.37  Aligned_cols=53  Identities=9%  Similarity=0.006  Sum_probs=36.2

Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +|.|..||+.+      ++.+-++..+ .++....+...+. ++..++.|+.+++||..+.
T Consensus       437 ~g~l~A~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg-~vf~g~~dg~l~a~d~~tG  489 (668)
T 1kv9_A          437 SGALLAWDPVK------QKAAWKVPYP-THWNGGTLSTAGN-LVFQGTAAGQMHAYSADKG  489 (668)
T ss_dssp             EEEEEEEETTT------TEEEEEEEES-SSCCCCEEEETTT-EEEEECTTSEEEEEETTTC
T ss_pred             cceEEEEeCCC------CcEEEEccCC-CCCcCceeEeCCC-EEEEECCcccchhhhhhcC
Confidence            47899999988      6666665533 2233333444555 4457889999999999885

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=0.025  Score=55.14  Aligned_cols=163  Identities=10%  Similarity=0.054  Sum_probs=94.8

Q ss_pred             eeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC--CCcceeeee-------cCCCCceE
Q 010997          143 VNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--DNAEFALAM-------CPTEPYVL  212 (496)
Q Consensus       143 V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~--~~~v~~l~~-------~p~~~~l~  212 (496)
                      ...|+|.|. +++++++....+.|++.|+....            ....+..-.  -.....|+|       ++++++|+
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~------------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ly  208 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM------------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMI  208 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE------------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE------------EEEEEccCccccCCCcEEEEeecccccCCCCCEEE
Confidence            568889883 56666666655678888987751            111111111  113578999       99998666


Q ss_pred             EecCCC-c------EEEEecCC-ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEE
Q 010997          213 SGGKDK-S------VVLWSIQD-HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDV  284 (496)
Q Consensus       213 sg~~Dg-~------i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  284 (496)
                      .+...+ .      |.+.+... +...                                .....   ..+.. -.....+
T Consensus       209 vad~~~~~~~~~~~V~~i~r~~~G~~~--------------------------------~~~~~---~~v~~-~~~p~gi  252 (496)
T 3kya_A          209 VAIDYDGKGDESPSVYIIKRNADGTFD--------------------------------DRSDI---QLIAA-YKQCNGA  252 (496)
T ss_dssp             EEECCCTTGGGEEEEEEEECCTTSCCS--------------------------------TTSCE---EEEEE-ESCCCCE
T ss_pred             EEeCCCCCcccCceEEEEecCCCCcee--------------------------------ecccc---eeecc-CCCceEE
Confidence            555443 2      44554321 0000                                00000   11111 1234678


Q ss_pred             EEccCCCceEEEEcCCCeEEEEEcc-------CCCc-----cc----e-eee-ccCCCCeEEEEecCCCCcE-EEEEcCC
Q 010997          285 TFCPSSAQEFCSVGDDSCLILWDAR-------VGTS-----PV----I-KVE-KAHDADLHCVDWNPLDDNL-ILTGSAD  345 (496)
Q Consensus       285 ~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~-----~~----~-~~~-~~~~~~v~~i~~sp~~~~~-l~sgs~d  345 (496)
                      +++|++..++++-..++.|..+|+.       ++..     +.    . ... .........|+|+| ++++ +++-+..
T Consensus       253 avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p-~G~~lYvaD~~~  331 (496)
T 3kya_A          253 TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP-TGKYAYFGVINN  331 (496)
T ss_dssp             EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECT-TSSEEEEEETTT
T ss_pred             EEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcC-CCCEEEEEeCCC
Confidence            8899665788888889999999997       4442     00    0 111 12234568999999 8884 5555667


Q ss_pred             CcEEEEeCC
Q 010997          346 NSVRMFDRR  354 (496)
Q Consensus       346 g~i~iwd~~  354 (496)
                      ..|+.+|..
T Consensus       332 h~I~kid~d  340 (496)
T 3kya_A          332 HYFMRSDYD  340 (496)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEecC
Confidence            889987654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.65  E-value=0.0078  Score=60.77  Aligned_cols=59  Identities=19%  Similarity=0.210  Sum_probs=36.6

Q ss_pred             CeEEEEEccCCCccceeeec--cCCC-------CeEEEEec-CCCC---cEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          301 SCLILWDARVGTSPVIKVEK--AHDA-------DLHCVDWN-PLDD---NLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~~--~~~~-------~v~~i~~s-p~~~---~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      +.|..+|.++++  ..-.++  .|..       ...-+... . ++   ..++.++.+|.+.++|.++      ++.+..
T Consensus       278 ~sv~Ald~~TG~--~~W~~q~~~~d~wd~d~~~~p~l~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~t------G~~lw~  348 (599)
T 1w6s_A          278 MTIFGRDADTGE--AKFGYQKTPHDEWDYAGVNVMMLSEQKDK-DGKARKLLTHPDRNGIVYTLDRTD------GALVSA  348 (599)
T ss_dssp             SEEEEEETTTCC--EEEEEESSTTCSSCCCCCCCCEEEEEECT-TSCEEEEEEEECTTSEEEEEETTT------CCEEEE
T ss_pred             ceEEEEeCCCCc--eeeEeecCCCccccccCCCccEEEecccc-CCcEEEEEEEECCCcEEEEEECCC------CCEeec
Confidence            489999999988  333322  2211       11112222 3 45   5778899999999999988      555544


Q ss_pred             e
Q 010997          368 F  368 (496)
Q Consensus       368 ~  368 (496)
                      .
T Consensus       349 ~  349 (599)
T 1w6s_A          349 N  349 (599)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.63  E-value=0.002  Score=62.54  Aligned_cols=157  Identities=11%  Similarity=0.121  Sum_probs=98.2

Q ss_pred             ceeeeecC-CCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          199 EFALAMCP-TEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       199 v~~l~~~p-~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      ...|+++| ++..|+.+...+.|+.+|+.....                                         ..+...
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-----------------------------------------~~~~~~  177 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-----------------------------------------STVYSG  177 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-----------------------------------------EEEECC
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-----------------------------------------EEEecC
Confidence            36889998 455566555557888888865322                                         222223


Q ss_pred             CCceeEEEEccCCCceEEEEcCCC----eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDS----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  353 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~  353 (496)
                      ......|+|++++..++++...++    .+..++. .+.......+. .......++++|.++.++++-..++.|..+|.
T Consensus       178 ~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          178 LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            456789999999843556554333    3333443 33311112221 23456788899956777777777889999998


Q ss_pred             CCCCCCCCCCCceEec-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          354 RNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       354 ~~~~~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ..      ........ ........++|+|++.+|+++-...+.|..++...
T Consensus       256 ~~------~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          256 TT------QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TT------TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CC------CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            75      22211111 11234679999999997777777788999988764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.56  E-value=0.018  Score=58.49  Aligned_cols=183  Identities=5%  Similarity=-0.016  Sum_probs=111.4

Q ss_pred             CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-EecCCCcEEEEecCCccccccCCccccc
Q 010997          162 SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATAK  240 (496)
Q Consensus       162 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg~~Dg~i~iwd~~~~~~~~~~~~~~~~  240 (496)
                      ...|++.++.....          .......+-.  ...+|+|++.+..|+ +=...+.|..++++....          
T Consensus        17 ~~~I~~i~~~~~~~----------~~~~~~~~~~--~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~----------   74 (619)
T 3s94_A           17 RRDLRLVDATNGKE----------NATIVVGGLE--DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES----------   74 (619)
T ss_dssp             SSBEEEECCC-------------------CBCCS--CEEEEEEETTTTEEEEEETTTTEEEEEEC---------------
T ss_pred             cccEEEEeCCCCcc----------eEEEEEcCCC--ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc----------
Confidence            45788888875410          0111222222  246899998766555 444567888888764210          


Q ss_pred             cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec
Q 010997          241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  320 (496)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  320 (496)
                                                   ....+.........|++.+.+.+++++-...+.|.+.++....  ......
T Consensus        75 -----------------------------~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~--~~~l~~  123 (619)
T 3s94_A           75 -----------------------------VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL--RKVLFW  123 (619)
T ss_dssp             -----------------------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEEC
T ss_pred             -----------------------------eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC--EEEEEe
Confidence                                         0012222234678999998765788888888999999987654  222222


Q ss_pred             cCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997          321 AHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN  398 (496)
Q Consensus       321 ~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~  398 (496)
                      ..-.....|+++|..+.++.+-- ..+.|...++.-       .....+ ...-.....|++++++..|+++-...+.|.
T Consensus       124 ~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-------~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~  196 (619)
T 3s94_A          124 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-------SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  196 (619)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-------CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence            34456789999994455555542 246777777663       333333 223456789999998777887777788899


Q ss_pred             EEECCC
Q 010997          399 IWDYEK  404 (496)
Q Consensus       399 iwd~~~  404 (496)
                      .+|+..
T Consensus       197 ~~~~dG  202 (619)
T 3s94_A          197 KSNLDG  202 (619)
T ss_dssp             EESSSC
T ss_pred             EecCCC
Confidence            999875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.50  E-value=0.018  Score=55.74  Aligned_cols=156  Identities=10%  Similarity=0.131  Sum_probs=94.5

Q ss_pred             ceeeeecCC--CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeec
Q 010997          199 EFALAMCPT--EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNG  276 (496)
Q Consensus       199 v~~l~~~p~--~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (496)
                      ..+|+|+|+  +..|+.+...+.|+.+|..++..                                         ..+..
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-----------------------------------------~~~~~  179 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-----------------------------------------DIKTT  179 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-----------------------------------------EEECC
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-----------------------------------------EEeec
Confidence            368999984  34455554448899999865432                                         12222


Q ss_pred             CCCceeEEEEccCCCceEEEEcCC---C-eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEe
Q 010997          277 HEDTVEDVTFCPSSAQEFCSVGDD---S-CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD  352 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s~~~d---g-~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd  352 (496)
                      ......++++++++ .++++....   . .+...+...... ..... ........++++|.++.++++-..++.|+.+|
T Consensus       180 ~~~~P~giavd~dG-~lyVad~~~~~~~~gv~~~~~~~~~~-~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d  256 (433)
T 4hw6_A          180 NIGQCADVNFTLNG-DMVVVDDQSSDTNTGIYLFTRASGFT-ERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYD  256 (433)
T ss_dssp             CCSCEEEEEECTTC-CEEEEECCSCTTSEEEEEECGGGTTC-CEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEEC
T ss_pred             CCCCccEEEECCCC-CEEEEcCCCCcccceEEEEECCCCee-ccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEE
Confidence            33457899999999 466655422   1 233333322211 01111 22345677888985566666666788999999


Q ss_pred             CCCCCCCCCCCCceEe-c-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          353 RRNLTSNGVGSPINKF-E-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       353 ~~~~~~~~~~~~~~~~-~-~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ..+      +.....+ . +....-..++|+|++.+|+++-...+.|+.+++..
T Consensus       257 ~~~------g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~  304 (433)
T 4hw6_A          257 PAT------GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR  304 (433)
T ss_dssp             TTT------CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred             CCC------CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence            875      3331222 1 11222357999999987787777788999988763

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.46  E-value=0.079  Score=55.62  Aligned_cols=246  Identities=7%  Similarity=0.018  Sum_probs=137.0

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  219 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~  219 (496)
                      ...|.++...+ ++. |-.|+.++-|..|+............... ..   ..+-....|.++...++|. |..|+.++-
T Consensus       312 ~~~v~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~-~~---~~~l~~~~v~~i~~d~~g~-lWigt~~~G  384 (781)
T 3v9f_A          312 NASARYIFQDS-FNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ-MN---ESSLSNKVVSSVCDDGQGK-LWIGTDGGG  384 (781)
T ss_dssp             SSCEEEEEECS-SCC-EEEEEBSSCEEEECSSCCSCEEEC----C-CC---SSCCSSSCEEEEEECTTSC-EEEEEBSSC
T ss_pred             CCeEEEEEEeC-CCC-EEEEecCCeEEEeCCCCCcceeeccCccc-cc---cCCCCCcceEEEEEcCCCC-EEEEeCCCc
Confidence            35688888777 554 44566667788888765521110000000 00   0011223588888877775 555665667


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      |..+|..+.........                                     .......|.++...+++ . |..|+.
T Consensus       385 l~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~v~~i~~d~~g-~-lWigt~  425 (781)
T 3v9f_A          385 INVFENGKRVAIYNKEN-------------------------------------RELLSNSVLCSLKDSEG-N-LWFGTY  425 (781)
T ss_dssp             EEEEETTEEEEECC------------------------------------------CCCSBEEEEEECTTS-C-EEEEET
T ss_pred             EEEEECCCCeEEEccCC-------------------------------------CCCCCcceEEEEECCCC-C-EEEEec
Confidence            88888765322110000                                     01123568888887776 3 555776


Q ss_pred             CCeEEEEEccCCCccceeee--ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC-----C
Q 010997          300 DSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-----S  372 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h-----~  372 (496)
                      ++-|..+|..+++  .....  ......|.++...+ ++.+ ..|+. +-|..||..+      +.........     .
T Consensus       426 ~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~-~g~l-wigt~-~Gl~~~~~~~------~~~~~~~~~~~~~~~~  494 (781)
T 3v9f_A          426 LGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDK-NKKI-WIGTH-AGVFVIDLAS------KKVIHHYDTSNSQLLE  494 (781)
T ss_dssp             TEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECT-TSEE-EEEET-TEEEEEESSS------SSCCEEECTTTSSCSC
T ss_pred             cCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECC-CCCE-EEEEC-CceEEEeCCC------CeEEecccCccccccc
Confidence            6778999887654  21111  12346789999887 5554 44555 4588899876      2222211111     3


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec---C-CCCCcceEEecCCCCcEEEE
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA---G-HRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~-h~~~V~~~~~~p~~~~l~~s  448 (496)
                      ..|.++...++|. |. .|+.++-|..||.... .               +..+.   + ....|.++...+++...+++
T Consensus       495 ~~i~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~-~---------------~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T  556 (781)
T 3v9f_A          495 NFVRSIAQDSEGR-FW-IGTFGGGVGIYTPDMQ-L---------------VRKFNQYEGFCSNTINQIYRSSKGQMWLAT  556 (781)
T ss_dssp             SCEEEEEECTTCC-EE-EEESSSCEEEECTTCC-E---------------EEEECTTTTCSCSCEEEEEECTTSCEEEEE
T ss_pred             ceeEEEEEcCCCC-EE-EEEcCCCEEEEeCCCC-e---------------EEEccCCCCCCCCeeEEEEECCCCCEEEEE
Confidence            6799999999887 54 4554444777887652 1               11111   1 13467888888777644432


Q ss_pred             ecCCCCCCCCCCeEEEeecCC
Q 010997          449 VSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       449 ~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                       .        +|.|..|+...
T Consensus       557 -~--------~Glv~~~d~~~  568 (781)
T 3v9f_A          557 -G--------EGLVCFPSARN  568 (781)
T ss_dssp             -T--------TEEEEESCTTT
T ss_pred             -C--------CCceEEECCCC
Confidence             2        24447777653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.44  E-value=0.052  Score=55.09  Aligned_cols=203  Identities=6%  Similarity=-0.035  Sum_probs=120.8

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCC
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDK  218 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg  218 (496)
                      -+.+..++|.+.++.++.+-...+.|..+++....           .....+..... ...+|++.+.+. ++++-...+
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~-----------~~~~v~~~~~~-~P~GlAvD~~~~~ly~~d~~~~  106 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-----------SVQNVVVSGLL-SPDGLACDWLGEKLYWTDSETN  106 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEEEECSSCS-CEEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC-----------ceEEEEeCCCC-CcCeEEEEecCCEEEEEeCCCC
Confidence            34578899999677677676667889999887541           01112222212 357899988655 555556678


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE-
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV-  297 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-  297 (496)
                      .|.+.+++.....                                        ..+........+|++.|.++.++++- 
T Consensus       107 ~I~v~~~dG~~~~----------------------------------------~l~~~~l~~P~~Iavdp~~g~ly~tD~  146 (619)
T 3s94_A          107 RIEVSNLDGSLRK----------------------------------------VLFWQELDQPRAIALDPSSGFMYWTDW  146 (619)
T ss_dssp             EEEEEETTSCSCE----------------------------------------EEECSSCSCCCCEEEETTTTEEEEEEC
T ss_pred             EEEEEECCCCCEE----------------------------------------EEEeCCCCCCceEEEecCCCeEEEecc
Confidence            9999998643211                                        11112334567899998764666664 


Q ss_pred             cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEE
Q 010997          298 GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVL  376 (496)
Q Consensus       298 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~  376 (496)
                      +..+.|...++....  ........-...+.|++++..+.++++-+..+.|..+|+...       ....+ .+......
T Consensus       147 g~~~~I~r~~~dG~~--~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~-------~~~~~~~~~~~~P~  217 (619)
T 3s94_A          147 GEVPKIERAGMDGSS--RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT-------NRQAVVKGSLPHPF  217 (619)
T ss_dssp             SSSCEEEEEETTSCS--CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC-------EEC---------CC
T ss_pred             CCCCEEEEEECCCCc--eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC-------ccEEEEeCCCCCce
Confidence            234677777775443  222222334567899999845566666666788999998752       11111 11122234


Q ss_pred             EEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          377 CVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      .|++..+  .++.+-...+.|...|..++
T Consensus       218 gi~~~~~--~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          218 ALTLFED--ILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             CEEESSS--EEEEECTTTCSEEEEESSSC
T ss_pred             EEEEeCC--EEEEecCCCCEEEEEECCCC
Confidence            6677655  57777777888999998764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.1  Score=54.74  Aligned_cols=246  Identities=9%  Similarity=0.007  Sum_probs=132.4

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCC---CceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSR---PDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      ...|.++...+ ++.+ -.|+..+-|.++|..+.........  ...   ....-.+-....|.++...++|. |-.|+.
T Consensus       257 ~~~i~~i~~d~-~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~--~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~  331 (781)
T 3v9f_A          257 SSYIFSIKQLK-DNKL-WIATELNGIMILDLQQNQFLLPEQI--RFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTW  331 (781)
T ss_dssp             CCCEEEEEECT-TSEE-EEEESSSCEEEEETTCC-----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEB
T ss_pred             CceEEEEEECC-CCCE-EEEeCCCCeEEECCCCCeeeeeecc--ccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEec
Confidence            35688888776 5554 4556645688899876521110000  000   00000011223588888888776 556666


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      ++-|..++.............                             ...  ....-....|.++...+++  .|..
T Consensus       332 ~~Gl~~~~~~~~~~~~~~~~~-----------------------------~~~--~~~~l~~~~v~~i~~d~~g--~lWi  378 (781)
T 3v9f_A          332 GGGINFISNAPPTFHTWSYSP-----------------------------TQM--NESSLSNKVVSSVCDDGQG--KLWI  378 (781)
T ss_dssp             SSCEEEECSSCCSCEEEC---------------------------------CC--CSSCCSSSCEEEEEECTTS--CEEE
T ss_pred             CCeEEEeCCCCCcceeeccCc-----------------------------ccc--ccCCCCCcceEEEEEcCCC--CEEE
Confidence            777888887643221100000                             000  0000123468888887776  3666


Q ss_pred             EcCCCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---cCC
Q 010997          297 VGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHS  372 (496)
Q Consensus       297 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~  372 (496)
                      |+.++-|..||..+........ .......|.++...+ ++.+. .|+.++-|..+|..+      + .+..+.   ...
T Consensus       379 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~------~-~~~~~~~~~~~~  449 (781)
T 3v9f_A          379 GTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLW-FGTYLGNISYYNTRL------K-KFQIIELEKNEL  449 (781)
T ss_dssp             EEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEE-EEETTEEEEEECSSS------C-EEEECCSTTTCC
T ss_pred             EeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEE-EEeccCCEEEEcCCC------C-cEEEeccCCCCC
Confidence            6766778889876543111100 012346789999887 55544 466666788998875      2 233332   234


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEec---CCCCCcceEEecCCCCcEEEE
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA---GHRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~~~~~p~~~~l~~s  448 (496)
                      ..|.++...+++. |. .|+. +-|..||.....-             .......   .....|.++...+++...+++
T Consensus       450 ~~v~~i~~d~~g~-lw-igt~-~Gl~~~~~~~~~~-------------~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt  512 (781)
T 3v9f_A          450 LDVRVFYEDKNKK-IW-IGTH-AGVFVIDLASKKV-------------IHHYDTSNSQLLENFVRSIAQDSEGRFWIGT  512 (781)
T ss_dssp             CCEEEEEECTTSE-EE-EEET-TEEEEEESSSSSC-------------CEEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred             CeEEEEEECCCCC-EE-EEEC-CceEEEeCCCCeE-------------EecccCcccccccceeEEEEEcCCCCEEEEE
Confidence            6799999988886 44 4444 4588898765311             0111000   113568888888877655543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.41  E-value=0.019  Score=52.92  Aligned_cols=123  Identities=11%  Similarity=0.167  Sum_probs=78.7

Q ss_pred             CceeEEEE--ccCCC-ceEEEEcCCCeEEEEEccCC---C--ccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEE
Q 010997          279 DTVEDVTF--CPSSA-QEFCSVGDDSCLILWDARVG---T--SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  350 (496)
Q Consensus       279 ~~v~~l~~--~~~~~-~~l~s~~~dg~i~iwd~~~~---~--~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~i  350 (496)
                      ..+..+++  +|... .+++....+|.+..|++...   .  ...+..+ ...+.+-.+...+ ....|..+-.+.-|..
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~  205 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEGMAADD-EYGRLYIAEEDEAIWK  205 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcceEEEcC-CCCeEEEecccceEEE
Confidence            45667777  66442 36777888899999998532   1  1133444 3456788888888 6778888888866666


Q ss_pred             EeCCCCCCCCCCCCceEec-cC-CCCEEEEEE--cCCCC-CEEEEEeCCCcEEEEECCC
Q 010997          351 FDRRNLTSNGVGSPINKFE-GH-SAAVLCVQW--SPDKS-SVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~~~~-~h-~~~i~~l~~--sp~~~-~llas~~~dg~i~iwd~~~  404 (496)
                      +|.+-... .....+..+. ++ ...+..|++  .+++. +||+|+-.++...+||...
T Consensus       206 ~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          206 FSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            66543110 0123444432 22 246888888  45555 6887776688999999963

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.41  E-value=0.0039  Score=56.97  Aligned_cols=162  Identities=10%  Similarity=0.085  Sum_probs=100.1

Q ss_pred             eeeeecCCCC-ceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997          200 FALAMCPTEP-YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  278 (496)
Q Consensus       200 ~~l~~~p~~~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  278 (496)
                      .+++|++... ++++.-..++|..||...+.......+      .                      ..    .. ....
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~------~----------------------~s----~~-g~~~   62 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID------G----------------------AS----SN-GDGE   62 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT------T----------------------TC----CS-SCCS
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC------C----------------------cc----cc-CCCc
Confidence            5789987555 445555799999999864321110000      0                      00    00 0011


Q ss_pred             CceeEEEE---ccCCCceEEEEc-------------CCCeEEEEEcc---CCCccceeeecc-----------CCCCeEE
Q 010997          279 DTVEDVTF---CPSSAQEFCSVG-------------DDSCLILWDAR---VGTSPVIKVEKA-----------HDADLHC  328 (496)
Q Consensus       279 ~~v~~l~~---~~~~~~~l~s~~-------------~dg~i~iwd~~---~~~~~~~~~~~~-----------~~~~v~~  328 (496)
                      ..+..|.|   .|++ .++++..             .+..|..||+.   +++......+..           -....+.
T Consensus        63 ~~~sGl~~~~~D~~g-rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nD  141 (334)
T 2p9w_A           63 QQMSGLSLLTHDNSK-RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQ  141 (334)
T ss_dssp             EEEEEEEESSSSSCC-EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEE
T ss_pred             ceeeEEEEeccCCCC-cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCce
Confidence            23578899   5775 6666433             26789999998   665221122111           1135889


Q ss_pred             EEecCCCCcEEEEEcCC-CcEEEEeCCCCCCCCCCCCceEec------cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEE
Q 010997          329 VDWNPLDDNLILTGSAD-NSVRMFDRRNLTSNGVGSPINKFE------GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD  401 (496)
Q Consensus       329 i~~sp~~~~~l~sgs~d-g~i~iwd~~~~~~~~~~~~~~~~~------~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd  401 (496)
                      ++..+ +++..++++.- +.|..++...       +.+..+.      ......+.|+++|++..|++..+ .|.+..+|
T Consensus       142 vavD~-~GnaYVt~s~~~~~I~rV~pdG-------~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD  212 (334)
T 2p9w_A          142 SAQDR-DGNSYVAFALGMPAIARVSADG-------KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFD  212 (334)
T ss_dssp             EEECT-TSCEEEEEEESSCEEEEECTTS-------CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEE
T ss_pred             eEECC-CCCEEEeCCCCCCeEEEEeCCC-------CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEc
Confidence            99999 89999988888 8877777663       3233221      11234679999999987765555 99999999


Q ss_pred             CCC
Q 010997          402 YEK  404 (496)
Q Consensus       402 ~~~  404 (496)
                      +..
T Consensus       213 ~~~  215 (334)
T 2p9w_A          213 VSK  215 (334)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            884

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.39  E-value=0.017  Score=58.06  Aligned_cols=54  Identities=19%  Similarity=0.112  Sum_probs=35.0

Q ss_pred             CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          344 ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       344 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      .+|.|..||+.+      ++.+.++... ..+.+..+...+..++ .++.|+.|+.||..++
T Consensus       442 ~~g~l~a~D~~t------G~~~W~~~~~-~~~~~~~~~t~gg~v~-~g~~dg~l~a~D~~tG  495 (571)
T 2ad6_A          442 EMGQIRAFDLTT------GKAKWTKWEK-FAAWGGTLYTKGGLVW-YATLDGYLKALDNKDG  495 (571)
T ss_dssp             CCEEEEEECTTT------CCEEEEEEES-SCCCSBCEEETTTEEE-EECTTSEEEEEETTTC
T ss_pred             CCCeEEEEECCC------CCEEEEecCC-CCccceeEEECCCEEE-EEcCCCeEEEEECCCC
Confidence            357899999988      6666665432 2222222233344454 6888999999999885

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.38  E-value=0.078  Score=49.06  Aligned_cols=116  Identities=14%  Similarity=0.201  Sum_probs=62.3

Q ss_pred             CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997          277 HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       277 h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                      ....+..+.+.+++ .+++.+...+..+-.|-.....  ..........+..+++.+ ++.+++. +.+|.+.+.+....
T Consensus       161 ~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~tW--~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~G~~~~s~~D~G  235 (327)
T 2xbg_A          161 AIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQTAW--EPHNRTTSRRLHNMGFTP-DGRLWMI-VNGGKIAFSDPDNS  235 (327)
T ss_dssp             CCCCEEEEEECTTS-CEEEEETTSSEEEEECTTCSSC--EEEECCSSSCEEEEEECT-TSCEEEE-ETTTEEEEEETTEE
T ss_pred             CCcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCCce--eECCCCCCCccceeEECC-CCCEEEE-eCCceEEEecCCCC
Confidence            34467889999877 5666554444334444211111  111224556788999988 6766554 46788877642210


Q ss_pred             CCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997          357 TSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  403 (496)
Q Consensus       357 ~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~  403 (496)
                      .   ....+..- ..+...+.++.+.+++. +++++. ++.| ++...
T Consensus       236 ~---tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g~-~g~i-~~S~D  277 (327)
T 2xbg_A          236 E---NWGELLSPLRRNSVGFLDLAYRTPNE-VWLAGG-AGAL-LCSQD  277 (327)
T ss_dssp             E---EECCCBCTTSSCCSCEEEEEESSSSC-EEEEES-TTCE-EEESS
T ss_pred             C---eeEeccCCcccCCcceEEEEecCCCE-EEEEeC-CCeE-EEeCC
Confidence            0   01111110 01234588999998776 665554 6766 34433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.35  E-value=0.04  Score=55.54  Aligned_cols=52  Identities=21%  Similarity=0.229  Sum_probs=33.3

Q ss_pred             CeEEEEEccCCCccceeeec--cCC-------CCeEEEEec-CCCC---cEEEEEcCCCcEEEEeCCC
Q 010997          301 SCLILWDARVGTSPVIKVEK--AHD-------ADLHCVDWN-PLDD---NLILTGSADNSVRMFDRRN  355 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~~--~~~-------~~v~~i~~s-p~~~---~~l~sgs~dg~i~iwd~~~  355 (496)
                      +.|..+|..+++  ..-.++  .|.       ....-+... . ++   .+++.++.+|.++++|..+
T Consensus       291 ~~v~AlD~~TG~--~~W~~q~~~~d~wd~~~~~~p~l~~~~~~-~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          291 SGQVGVDPSSGE--VKWFYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SEEEEECTTTCC--EEEEEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ceEEEEeCCCCC--EEEEEeCCCCCcccccCCCCcEEEeeecC-CCCEEEEEEEECCCceEEEEECCC
Confidence            689999999988  333322  232       111112222 2 45   4788899999999999987

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.31  E-value=0.042  Score=50.69  Aligned_cols=155  Identities=7%  Similarity=0.107  Sum_probs=91.8

Q ss_pred             EEEEcC--CCeEEEEEccCCCccceeeecc------CC-CCeEEEEe--cCCCCc-EEEEEcCCCcEEEEeCCCCCCC-C
Q 010997          294 FCSVGD--DSCLILWDARVGTSPVIKVEKA------HD-ADLHCVDW--NPLDDN-LILTGSADNSVRMFDRRNLTSN-G  360 (496)
Q Consensus       294 l~s~~~--dg~i~iwd~~~~~~~~~~~~~~------~~-~~v~~i~~--sp~~~~-~l~sgs~dg~i~iwd~~~~~~~-~  360 (496)
                      +++.-.  +++|.+|++.....+ +.....      .. ..+..+++  +|..+. ++++...+|.+..|++...... .
T Consensus        90 ~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~  168 (355)
T 3amr_A           90 AASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI  168 (355)
T ss_dssp             EEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE
T ss_pred             EEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc
Confidence            344444  689999987422211 222211      11 56667777  774443 6777888899999998542110 1


Q ss_pred             CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe-cCCC-CCcceEEe
Q 010997          361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-AGHR-DKVVDFHW  438 (496)
Q Consensus       361 ~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~-~~V~~~~~  438 (496)
                      ..+.+++|.. .+.+-.+...+....|+ .+-++.-|..++......          ....++... .++. ..+..|+.
T Consensus       169 ~~~lVR~f~l-gsq~EgcvvDd~~g~Ly-v~eEd~GIw~~da~p~~~----------~~~~~v~~~~~g~l~aDvEGLai  236 (355)
T 3amr_A          169 SGKKVRAFKM-NSQTEGMAADDEYGRLY-IAEEDEAIWKFSAEPDGG----------SNGTVIDRADGRHLTRDIEGLTI  236 (355)
T ss_dssp             EEEEEEEEEC-SSCEEEEEEETTTTEEE-EEETTTEEEEEECSTTSC----------SCCEEEEEBSSSSBCSCEEEEEE
T ss_pred             cceEEEEecC-CCCcceEEEcCCCCeEE-EecccceEEEEeCCcCCC----------CCceEEEEecCCccccCcceEEE
Confidence            1456677764 45788899998777665 777775554445332110          112333333 2332 36777877


Q ss_pred             --cCCCC-cEEEEecCCCCCCCCCCeEEEeecC
Q 010997          439 --NASDP-WTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       439 --~p~~~-~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                        .+++. ++++|+-.+       +++.|||..
T Consensus       237 ~~~~~g~gyLivSsQG~-------~s~~Vydr~  262 (355)
T 3amr_A          237 YYAADGKGYLMASSQGN-------SSYAIYDRQ  262 (355)
T ss_dssp             EECGGGCEEEEEEEGGG-------TEEEEEESS
T ss_pred             EecCCCCEEEEEEcCCC-------CEEEEEECC
Confidence              44455 788877555       899999996

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.30  E-value=0.022  Score=57.42  Aligned_cols=53  Identities=17%  Similarity=0.110  Sum_probs=32.4

Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +|.|..||+.+      ++.+-+... ..++..-...-.+..+| .++.|+.++.||.+++
T Consensus       452 ~G~l~A~D~~t------G~~~W~~~~-~~~~~~g~~~tagg~vf-~gt~dg~l~A~D~~tG  504 (599)
T 1w6s_A          452 LGQIKAYNAIT------GDYKWEKME-RFAVWGGTMATAGDLVF-YGTLDGYLKARDSDTG  504 (599)
T ss_dssp             CEEEEEECTTT------CCEEEEEEE-SSCCCSBCEEETTTEEE-EECTTSEEEEEETTTC
T ss_pred             cCeEEEEECCC------CCEEeEecC-CCCccCcceEecCCEEE-EECCCCeEEEEECCCC
Confidence            46788888887      666555532 11111111122344344 6888999999999985

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.30  E-value=0.19  Score=50.99  Aligned_cols=200  Identities=6%  Similarity=-0.065  Sum_probs=127.4

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCC-ceEEecCCCc
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP-YVLSGGKDKS  219 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~-~l~sg~~Dg~  219 (496)
                      ..+..|+|.+.++.++.+-..++.|+.+++....            ....+..... ...+|++.+.+. ++++-...+.
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~------------~~~v~~~g~~-~P~GlAvD~~~~~LY~tD~~~~~  103 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSA------------LEHVVEFGLD-YPEGMAVDWLGKNLYWADTGTNR  103 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------CEEEECSSCS-CCCEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCC------------cEEEEeCCCC-CcceEEEEeCCCEEEEEECCCCE
Confidence            4578999999777777787788999999987541            1112221112 246788876654 4455556788


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE-c
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV-G  298 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~-~  298 (496)
                      |.+.+++.....                                        ..+........+|++.|..+.++++- +
T Consensus       104 I~v~~~dG~~~~----------------------------------------~l~~~~l~~P~~iavdp~~G~lY~tD~g  143 (628)
T 4a0p_A          104 IEVSKLDGQHRQ----------------------------------------VLVWKDLDSPRALALDPAEGFMYWTEWG  143 (628)
T ss_dssp             EEEEETTSTTCE----------------------------------------EEECSSCCCEEEEEEETTTTEEEEEECS
T ss_pred             EEEEecCCCcEE----------------------------------------EEEeCCCCCcccEEEccCCCeEEEeCCC
Confidence            888887642110                                        11112234568999998664666654 3


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEE
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV  378 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l  378 (496)
                      ..+.|...++....  ..... ..-...+.|++++..+.+.++-...+.|..+|+..       .....+...-.....|
T Consensus       144 ~~~~I~r~~~dG~~--~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG-------~~~~v~~~~l~~P~gl  213 (628)
T 4a0p_A          144 GKPKIDRAAMDGSE--RTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG-------LNREVIADDLPHPFGL  213 (628)
T ss_dssp             SSCEEEEEETTSCS--CEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS-------CSCEEEEECCSCEEEE
T ss_pred             CCCEEEEEeCCCCc--eEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC-------CceEEeeccCCCceEE
Confidence            36788888876554  22222 34567889999994455556666678999999875       2223333334456688


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          379 QWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       379 ~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ++..  .+++.+-...+.|...|..++
T Consensus       214 av~~--~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          214 TQYQ--DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             EEET--TEEEEEETTTTEEEEEETTTC
T ss_pred             EEEC--CEEEEecCCCCEEEEEECCCC
Confidence            8865  357777777888999987653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.20  E-value=0.035  Score=50.70  Aligned_cols=166  Identities=13%  Similarity=0.110  Sum_probs=104.3

Q ss_pred             eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc----CC--CCeEEEEe---cCCCCcEEEEEc-
Q 010997          274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA----HD--ADLHCVDW---NPLDDNLILTGS-  343 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~--~~v~~i~~---sp~~~~~l~sgs-  343 (496)
                      +.....--.++.|++....++++.-..++|..||...+..... .+..    ..  ..+..|.|   .| ++.++++.. 
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~   85 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKN   85 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEE
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcc
Confidence            3344445678899886645666666899999999875541111 2211    11  13579999   68 677777543 


Q ss_pred             ------------CCCcEEEEeCC---CCCCCCCCCCceEec--c-----------CCCCEEEEEEcCCCCCEEEEEeCC-
Q 010997          344 ------------ADNSVRMFDRR---NLTSNGVGSPINKFE--G-----------HSAAVLCVQWSPDKSSVFGSSAED-  394 (496)
Q Consensus       344 ------------~dg~i~iwd~~---~~~~~~~~~~~~~~~--~-----------h~~~i~~l~~sp~~~~llas~~~d-  394 (496)
                                  .+..|..||+.   +      ++.+....  .           -......++..++|. .+++++.- 
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~t------g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~  158 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSEN------SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGM  158 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTT------CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESS
T ss_pred             cccccccccccCCCCEEEEEcCCcCCC------CCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCC
Confidence                        26779999998   5      44444332  1           112478999999998 67788776 


Q ss_pred             CcEEEEECCCCCcccCCCCCCCCCCCeeEEEe---cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          395 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH---AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       395 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      +.|...+...  +..           ...+..   .......+.++++|++..|++.-+        .|.|..+|+..
T Consensus       159 ~~I~rV~pdG--~~~-----------~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~--------~g~L~~fD~~~  215 (334)
T 2p9w_A          159 PAIARVSADG--KTV-----------STFAWESGNGGQRPGYSGITFDPHSNKLIAFGG--------PRALTAFDVSK  215 (334)
T ss_dssp             CEEEEECTTS--CCE-----------EEEEECCCCSSSCCSCSEEEEETTTTEEEEESS--------SSSEEEEECSS
T ss_pred             CeEEEEeCCC--CEE-----------eeeeecCCCcccccCcceEEEeCCCCEEEEEcC--------CCeEEEEcCCC
Confidence            6665555443  111           111110   112234779999999988887544        49999999873

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.19  E-value=0.041  Score=55.42  Aligned_cols=82  Identities=11%  Similarity=0.148  Sum_probs=46.7

Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  424 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  424 (496)
                      +|.|..||+.+      ++.+-+..... ++..-.....+. ++..++.|+.++.||.+++               +.+.
T Consensus       465 ~G~l~A~D~~t------G~~~W~~~~~~-~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG---------------~~lW  521 (582)
T 1flg_A          465 VGSLRAMDPVS------GKVVWEHKEHL-PLWAGVLATAGN-LVFTGTGDGYFKAFDAKSG---------------KELW  521 (582)
T ss_dssp             SEEEEEECTTT------CCEEEEEEESS-CCCSCCEEETTT-EEEEECTTSEEEEEETTTC---------------CEEE
T ss_pred             cceEEEEECCC------CCEEEEecCCC-CCcccceEeCCC-EEEEECCCCcEEEEECCCC---------------CEEE
Confidence            57899999988      66665554322 221111112344 3446889999999999885               3344


Q ss_pred             EecCCCCC-cceEEecCCCCcEEEEe
Q 010997          425 QHAGHRDK-VVDFHWNASDPWTVVSV  449 (496)
Q Consensus       425 ~~~~h~~~-V~~~~~~p~~~~l~~s~  449 (496)
                      .+...... -.-+.|..+|...++..
T Consensus       522 ~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          522 KFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             EEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EecCCCCcccCceEEEECCEEEEEEE
Confidence            44332221 12366666676555543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.15  E-value=0.11  Score=48.15  Aligned_cols=196  Identities=10%  Similarity=0.156  Sum_probs=103.0

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      +++.+..+.+.+ ++.+++.+. +|.|.. ....+. .          -.....++.. .+..+.+.+++.+++.+...+
T Consensus       120 ~~~~~~~i~~~~-~~~~~~~~~-~g~v~~-S~DgG~-t----------W~~~~~~~~~-~~~~~~~~~~~~~~~~g~~G~  184 (327)
T 2xbg_A          120 LPGSPRLIKALG-NGSAEMITN-VGAIYR-TKDSGK-N----------WQALVQEAIG-VMRNLNRSPSGEYVAVSSRGS  184 (327)
T ss_dssp             CSSCEEEEEEEE-TTEEEEEET-TCCEEE-ESSTTS-S----------EEEEECSCCC-CEEEEEECTTSCEEEEETTSS
T ss_pred             CCCCeEEEEEEC-CCCEEEEeC-CccEEE-EcCCCC-C----------CEEeecCCCc-ceEEEEEcCCCcEEEEECCCc
Confidence            345677888776 566666654 554432 111221 0          0111122333 478899999888777665444


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      ..+-+|-. +.                                     ....+  -......+..+.+.+++ . ++.++
T Consensus       185 ~~~S~d~g-G~-------------------------------------tW~~~--~~~~~~~~~~~~~~~~g-~-~~~~~  222 (327)
T 2xbg_A          185 FYSTWEPG-QT-------------------------------------AWEPH--NRTTSRRLHNMGFTPDG-R-LWMIV  222 (327)
T ss_dssp             EEEEECTT-CS-------------------------------------SCEEE--ECCSSSCEEEEEECTTS-C-EEEEE
T ss_pred             EEEEeCCC-CC-------------------------------------ceeEC--CCCCCCccceeEECCCC-C-EEEEe
Confidence            33434321 10                                     00000  11234567888888887 4 44555


Q ss_pred             CCCeEEEEEccCCC-ccceeee-ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---cCCC
Q 010997          299 DDSCLILWDARVGT-SPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHSA  373 (496)
Q Consensus       299 ~dg~i~iwd~~~~~-~~~~~~~-~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~  373 (496)
                      .+|.+.+.+...+. ....... ......+.++++.+ ++.+++++. +|.| ++....      +..-..+.   ....
T Consensus       223 ~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i-~~S~Dg------G~tW~~~~~~~~~~~  293 (327)
T 2xbg_A          223 NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL-LCSQDG------GQTWQQDVDVKKVPS  293 (327)
T ss_dssp             TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE-EEESST------TSSCEECGGGTTSSS
T ss_pred             CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE-EEeCCC------CcccEEcCccCCCCC
Confidence            67888776422121 0001000 01234688999998 677777664 6766 333333      22223332   2345


Q ss_pred             CEEEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997          374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDY  402 (496)
Q Consensus       374 ~i~~l~~sp~~~~llas~~~dg~i~iwd~  402 (496)
                      .+.++.|.+++. ++ .++.+|.|.-++-
T Consensus       294 ~~~~v~~~~~~~-~~-~~G~~G~i~~~~~  320 (327)
T 2xbg_A          294 NFYKILFFSPDQ-GF-ILGQKGILLRYVT  320 (327)
T ss_dssp             CCCEEEEEETTE-EE-EECSTTEEEEECC
T ss_pred             CeEEEEEECCCc-eE-EEcCCceEEEEcC
Confidence            678898976554 44 6667888776654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.07  E-value=0.017  Score=56.34  Aligned_cols=173  Identities=8%  Similarity=0.063  Sum_probs=98.4

Q ss_pred             ceeEEEEccC-CCceEEEEcCCCeEEEEEccCCCccceeeecc---CCCCeEEEEe-------cCCCCcEEEEEcCCC-c
Q 010997          280 TVEDVTFCPS-SAQEFCSVGDDSCLILWDARVGTSPVIKVEKA---HDADLHCVDW-------NPLDDNLILTGSADN-S  347 (496)
Q Consensus       280 ~v~~l~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~i~~-------sp~~~~~l~sgs~dg-~  347 (496)
                      ....|+|.|. +.+++++-...+.|++.|+..+.  +......   .......|+|       ++ ++..|+++...+ .
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCC
Confidence            4678999984 43556665555789999988766  2222211   1235899999       99 777555554443 2


Q ss_pred             ------EEEEeCCCCCCCCCCC--C-ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC-------CCCcccCC
Q 010997          348 ------VRMFDRRNLTSNGVGS--P-INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE-------KVGKKVEQ  411 (496)
Q Consensus       348 ------i~iwd~~~~~~~~~~~--~-~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~-------~~~~~~~~  411 (496)
                            |.+++......   ..  . ...+.... ....++++|++.+|+++-..++.|..+|+.       .. .....
T Consensus       217 ~~~~~~V~~i~r~~~G~---~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg-~~~tp  291 (496)
T 3kya_A          217 GDESPSVYIIKRNADGT---FDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG-GSWDP  291 (496)
T ss_dssp             GGGEEEEEEEECCTTSC---CSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT-CCCCC
T ss_pred             cccCceEEEEecCCCCc---eeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc-eeecc
Confidence                  66776332000   11  0 01222112 335778899777788888888999999987       32 11000


Q ss_pred             CCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          412 GPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       412 ~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ...........++.. +....-..++|+|++..++++-+..       +.|+.+++.
T Consensus       292 ~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~-------h~I~kid~d  340 (496)
T 3kya_A          292 IVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINN-------HYFMRSDYD  340 (496)
T ss_dssp             BGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTT-------TEEEEEEEE
T ss_pred             cccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCC-------CEEEEEecC
Confidence            000000001123333 2233457899999998767655443       788886654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.99  E-value=0.28  Score=53.49  Aligned_cols=80  Identities=15%  Similarity=0.138  Sum_probs=49.6

Q ss_pred             EEecCCCceeEEEecCCC-----CcEEEEEeC-CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec--C
Q 010997          135 KTIIHPGEVNRIRELPQN-----TKIVATHTD-SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC--P  206 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~-----~~~lat~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~--p  206 (496)
                      ....-.++|.|+++.|..     ..++|.|.. |++|+|+++.......          ...+.+.  ....++.+.  .
T Consensus       548 ~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~----------~~~L~~~--~~p~si~l~~~~  615 (1158)
T 3ei3_A          548 SHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH----------KEMLGGE--IIPRSILMTTFE  615 (1158)
T ss_dssp             EEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE----------EEECCSS--CCEEEEEEEEET
T ss_pred             cccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE----------EEECCCC--CCCcEEEEEEeC
Confidence            334456789999998632     478999997 9999999997542110          1111111  112233322  2


Q ss_pred             CCCceEEecCCCcEEEEecC
Q 010997          207 TEPYVLSGGKDKSVVLWSIQ  226 (496)
Q Consensus       207 ~~~~l~sg~~Dg~i~iwd~~  226 (496)
                      ...+|..|-.||.+.-+.++
T Consensus       616 ~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          616 SSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             TEEEEEEEETTSEEEEEEEC
T ss_pred             CCcEEEEEeCCCeEEEEEEc
Confidence            33588899999998777654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.98  E-value=0.24  Score=46.28  Aligned_cols=243  Identities=10%  Similarity=0.086  Sum_probs=118.6

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE---ecCCCCcceeeeecCC---CCceEEe
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL---TGHQDNAEFALAMCPT---EPYVLSG  214 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l---~~h~~~~v~~l~~~p~---~~~l~sg  214 (496)
                      .....++|.| +++++++ ..+|.|++++  .+. .         ..+..+   ..... ....|+|+|+   +..|+.+
T Consensus        31 ~~P~~ia~~p-dG~l~V~-e~~g~I~~i~--~g~-~---------~~~~~~~v~~~g~~-~p~gia~~pdf~~~g~lYv~   95 (352)
T 2ism_A           31 EVPWALAFLP-DGGMLIA-ERPGRIRLFR--EGR-L---------STYAELSVYHRGES-GLLGLALHPRFPQEPYVYAY   95 (352)
T ss_dssp             SCEEEEEECT-TSCEEEE-ETTTEEEEEE--TTE-E---------EEEEECCCCCSTTC-SEEEEEECTTTTTSCEEEEE
T ss_pred             CCceEEEEcC-CCeEEEE-eCCCeEEEEE--CCC-c---------cEeecceEeecCCC-CceeEEECCCCCCCCEEEEE
Confidence            3467899999 7776655 4569999998  221 0         111111   11112 3579999998   4444443


Q ss_pred             cC-C-----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee---cCCCceeEEE
Q 010997          215 GK-D-----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN---GHEDTVEDVT  285 (496)
Q Consensus       215 ~~-D-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~  285 (496)
                      .. .     +.|..++.......   ...                               ..+..+.   +.......++
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~---~~~-------------------------------~l~~~~p~~~~~~h~~~~l~  141 (352)
T 2ism_A           96 RTVAEGGLRNQVVRLRHLGERGV---LDR-------------------------------VVLDGIPARPHGLHSGGRIA  141 (352)
T ss_dssp             EEECTTSSEEEEEEEEECSSCEE---EEE-------------------------------EEEEEECCCTTCCCCCCCEE
T ss_pred             EecCCCCCccEEEEEEeCCCCcC---ceE-------------------------------EEEEeCCCCCCCCcCCceEE
Confidence            32 2     56777776532100   000                               0000011   1111236899


Q ss_pred             EccCCCceEEEEcC-------------CCeEEEEEccCC------------CccceeeeccCCCCeEEEEecCCCCcEEE
Q 010997          286 FCPSSAQEFCSVGD-------------DSCLILWDARVG------------TSPVIKVEKAHDADLHCVDWNPLDDNLIL  340 (496)
Q Consensus       286 ~~~~~~~~l~s~~~-------------dg~i~iwd~~~~------------~~~~~~~~~~~~~~v~~i~~sp~~~~~l~  340 (496)
                      |.|++ .++++.+.             .|.|.-++....            ....+. ..++ .....++|+|.++.+++
T Consensus       142 ~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~-a~G~-rnp~g~a~d~~~g~l~v  218 (352)
T 2ism_A          142 FGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVY-SLGH-RNPQGLAWHPKTGELFS  218 (352)
T ss_dssp             ECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEE-EECC-SEECCCEECTTTCCEEE
T ss_pred             ECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEE-EEcC-CCcccEEEECCCCCEEE
Confidence            99998 66666432             245666665420            001111 1122 23567899984456555


Q ss_pred             EEcCCCc--------EEEEeCCCCC----------CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEEC
Q 010997          341 TGSADNS--------VRMFDRRNLT----------SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY  402 (496)
Q Consensus       341 sgs~dg~--------i~iwd~~~~~----------~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~  402 (496)
                      +-.....        |.+...-..-          ......++..+. +......++| .++. ++++.-..+.|...++
T Consensus       219 ~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~-~~G~-l~v~~~~~~~v~~v~~  295 (352)
T 2ism_A          219 SEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAF-FRGD-LYVAGLRGQALLRLVL  295 (352)
T ss_dssp             EEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEE-ETTE-EEEEETTTTEEEEEEE
T ss_pred             EEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEE-ECCE-EEEEECCCCEEEEEEE
Confidence            5433332        4433211100          000012444443 3345678888 4554 6666666777888777


Q ss_pred             CCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          403 EKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                      ...+.....      .....+.   .-...+.++++.|+|..+++
T Consensus       296 ~~~~~~~~~------~~~~~~~---~~~~rp~~v~~~pdG~lyv~  331 (352)
T 2ism_A          296 EGERGRWRV------LRVETAL---SGFGRLREVQVGPDGALYVT  331 (352)
T ss_dssp             EEETTEEEE------EEEEEEE---ESSCCEEEEEECTTSCEEEE
T ss_pred             CCCCcceee------cchheec---ccCCCeeEEEECCCCcEEEE
Confidence            653210000      0001111   22357899999998854443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.68  E-value=0.17  Score=45.87  Aligned_cols=103  Identities=12%  Similarity=0.130  Sum_probs=54.1

Q ss_pred             ceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCCCCCC
Q 010997          292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV  361 (496)
Q Consensus       292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~  361 (496)
                      .+++.|+.+     ..+.+||+.+.+...+...........++.+   ++.+++.|+.+     ..+.+||+.+..    
T Consensus       114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~----  186 (301)
T 2vpj_A          114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGH----  186 (301)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred             EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCc----
Confidence            677777644     3688999887663222222111112222332   56777777755     458889987632    


Q ss_pred             CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997          362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  404 (496)
Q Consensus       362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~  404 (496)
                      ...+..+.........+.+  ++ .|++.|+.+     ..+.+||+.+
T Consensus       187 W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          187 WTNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred             EEeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCC
Confidence            2222112111111122222  33 477777764     4688999876

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.63  E-value=0.3  Score=45.49  Aligned_cols=115  Identities=7%  Similarity=0.027  Sum_probs=70.2

Q ss_pred             ceeEEEEcc--CCCc-eEEEEcC--CCeEEEEEccCCCcc--ceeeecc-CCCCeEEEEecCCCCcEEEEEcC-------
Q 010997          280 TVEDVTFCP--SSAQ-EFCSVGD--DSCLILWDARVGTSP--VIKVEKA-HDADLHCVDWNPLDDNLILTGSA-------  344 (496)
Q Consensus       280 ~v~~l~~~~--~~~~-~l~s~~~--dg~i~iwd~~~~~~~--~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~-------  344 (496)
                      ....+.+.+  ++.. ++++-..  +.+|.+|++......  .+....+ .-...+.+++.+ ++.+.++...       
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCccc
Confidence            455666655  3322 3444333  578888888765321  1222221 124678999999 7887777541       


Q ss_pred             ----------CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          345 ----------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       345 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                                .|.|.-+|...         +..+...-...+.++|+|+++.++++-+..+.|..|++..
T Consensus       192 ~~~e~~~~~~~g~vyr~d~~~---------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSPND---------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECTTC---------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccchhhccCCccEEEEEECCe---------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                      24455554321         2222222345789999999998888887889999999875

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.62  E-value=0.37  Score=45.56  Aligned_cols=156  Identities=12%  Similarity=0.131  Sum_probs=92.8

Q ss_pred             CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecC--CC-CcceeeeecCCCCceEEecCCCcEEEEecCCc
Q 010997          152 NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--QD-NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH  228 (496)
Q Consensus       152 ~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h--~~-~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~  228 (496)
                      ++.-++.+- ++.||.-++....            .-+.+...  -. ..|..+..+|+|++||..+ +..|.|-.+..+
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~------------~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~   96 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDS------------LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWG   96 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCS------------SCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCC------------cceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCc
Confidence            444444443 3578877777541            12233322  11 1477899999999999887 568999888632


Q ss_pred             cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee------cCCCceeEEEEccCCC--ceEEEEcCC
Q 010997          229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN------GHEDTVEDVTFCPSSA--QEFCSVGDD  300 (496)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~~~~--~~l~s~~~d  300 (496)
                      ........  .   ...                      .. .+.+.      ....+|..+.|||-+.  ..|++-..|
T Consensus        97 ~~~~~~~~--~---~~~----------------------~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD  148 (452)
T 3pbp_A           97 YSNVEDVS--I---QDA----------------------FQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED  148 (452)
T ss_dssp             CSCCCCHH--H---HHT----------------------TE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT
T ss_pred             cccCcccc--c---ccc----------------------cc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC
Confidence            11100000  0   000                      00 01111      1357899999999763  378999999


Q ss_pred             CeEEEEEccCCCccceeee---------ccCCCCeEEEEecCCCCcEEEE--EcCCCcEEEE
Q 010997          301 SCLILWDARVGTSPVIKVE---------KAHDADLHCVDWNPLDDNLILT--GSADNSVRMF  351 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~---------~~~~~~v~~i~~sp~~~~~l~s--gs~dg~i~iw  351 (496)
                      +.|++||+........ .+         ......|.+++|.+ ++-.|..  .+..|.|.-.
T Consensus       149 ~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          149 DTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred             CEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence            9999999986331111 21         12236788999998 7766666  4478888655

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.60  E-value=0.24  Score=44.96  Aligned_cols=103  Identities=9%  Similarity=0.087  Sum_probs=52.7

Q ss_pred             ceEEEEcCCC-----eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-------CcEEEEeCCCCCCC
Q 010997          292 QEFCSVGDDS-----CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-------NSVRMFDRRNLTSN  359 (496)
Q Consensus       292 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-------g~i~iwd~~~~~~~  359 (496)
                      .+++.|+.++     .+.+||+.+.+...+...........++.+   ++.+++.|+.+       ..+.+||+.+..  
T Consensus       110 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--  184 (302)
T 2xn4_A          110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE--  184 (302)
T ss_dssp             EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE--
T ss_pred             EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc--
Confidence            6777776553     577888877653222111111112222232   56777777653       358889987632  


Q ss_pred             CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997          360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  404 (496)
Q Consensus       360 ~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~  404 (496)
                        ...+..+.........+.+  ++ .|++.|+.+     ..+.+||+.+
T Consensus       185 --W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~  229 (302)
T 2xn4_A          185 --WTYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTT  229 (302)
T ss_dssp             --EEEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTT
T ss_pred             --EEECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCC
Confidence              1222112111111122222  33 377777764     3688899876

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.42  E-value=0.39  Score=43.57  Aligned_cols=103  Identities=13%  Similarity=0.129  Sum_probs=52.6

Q ss_pred             ceEEEEcCC------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC---------CCcEEEEeCCCC
Q 010997          292 QEFCSVGDD------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA---------DNSVRMFDRRNL  356 (496)
Q Consensus       292 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~---------dg~i~iwd~~~~  356 (496)
                      .+++.|+.+      ..+.+||..+.................++.+   ++.+++.|+.         -..+.+||+.+.
T Consensus       103 ~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          103 KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred             EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence            677777765      4688999887652222111111111222232   5677777764         345889998873


Q ss_pred             CCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997          357 TSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  404 (496)
Q Consensus       357 ~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~  404 (496)
                      .    ...+..+......-..+.+  ++. |++.|+.+     ..+.+||+.+
T Consensus       180 ~----W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          180 T----WTELCPMIEARKNHGLVFV--KDK-IFAVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             E----EEEECCCSSCCBSCEEEEE--TTE-EEEECCEETTEEBCCEEEEETTT
T ss_pred             e----EEECCCccchhhcceEEEE--CCE-EEEEeCCCCCCCCceEEEeeCCC
Confidence            2    1222211111111122222  343 77777653     3588899876

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.36  E-value=0.28  Score=44.72  Aligned_cols=103  Identities=10%  Similarity=0.108  Sum_probs=53.3

Q ss_pred             ceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCCCCCC
Q 010997          292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV  361 (496)
Q Consensus       292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~  361 (496)
                      .+++.|+.+     ..+.+||+.+.+.............-.++.+   ++.+++.|+.+     ..+.+||+.+..    
T Consensus       123 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~----  195 (308)
T 1zgk_A          123 HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE----  195 (308)
T ss_dssp             EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE----
T ss_pred             EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe----
Confidence            566776643     3588899887652221111111112223333   46777777764     458889987632    


Q ss_pred             CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997          362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  404 (496)
Q Consensus       362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~  404 (496)
                      ...+..+.........+.+  ++ .|++.|+.+     ..+.+||+.+
T Consensus       196 W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~  240 (308)
T 1zgk_A          196 WRMITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVET  240 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTT
T ss_pred             EeeCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCC
Confidence            1112111111111222333  34 377777764     4588999876

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.25  E-value=0.76  Score=42.85  Aligned_cols=247  Identities=10%  Similarity=0.071  Sum_probs=121.6

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEe--cCCCCcceeeeecCC---CCceEEe
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILT--GHQDNAEFALAMCPT---EPYVLSG  214 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~--~h~~~~v~~l~~~p~---~~~l~sg  214 (496)
                      -.....++|.| +++++++ ..+|.|++++. .+.  .         .+..+.  .........|+++|+   +..|+.+
T Consensus        28 l~~P~~ia~~p-dG~l~V~-e~~g~I~~~d~-~G~--~---------~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~   93 (354)
T 3a9g_A           28 LEVPWSIAPLG-GGRYLVT-ERPGRLVLISP-SGK--K---------LVASFDVANVGEAGLLGLALHPEFPKKSWVYLY   93 (354)
T ss_dssp             CSCEEEEEEEE-TTEEEEE-ETTTEEEEECS-SCE--E---------EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCCCeEEEEcC-CCeEEEE-eCCCEEEEEeC-CCc--e---------EeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence            34568899999 7776655 45589999873 331  0         111110  111113578999997   4444443


Q ss_pred             cC----C----CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCe-eeee-cCCCceeEE
Q 010997          215 GK----D----KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR-GIYN-GHEDTVEDV  284 (496)
Q Consensus       215 ~~----D----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~h~~~v~~l  284 (496)
                      ..    +    ..|..|+.........                                 ..+.+ ..+. ........|
T Consensus        94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~---------------------------------~~~~l~~~~~~~~~h~~~~l  140 (354)
T 3a9g_A           94 ASYFAEGGHIRNRVIRGRLDGSTFKLK---------------------------------EVKTLIDGIPGAYIHNGGRI  140 (354)
T ss_dssp             EEEECGGGCEEEEEEEEEECSSSCCEE---------------------------------EEEEEEEEEECCSSCCCCCE
T ss_pred             EeccCCCCCcceEEEEEEECCCCcCcC---------------------------------ccEEEEEcCCCCCCcCCceE
Confidence            32    3    5666666543210000                                 00000 0111 111234678


Q ss_pred             EEccCCCceEEEEcC-------------CCeEEEEEccCCC-------ccceeeeccCCCCeEEEEecCCCCcEEEEEcC
Q 010997          285 TFCPSSAQEFCSVGD-------------DSCLILWDARVGT-------SPVIKVEKAHDADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       285 ~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~  344 (496)
                      .|.|++ .++++.+.             .|.|.-++....-       ...+. ..++ .....++|+|.++.++++-..
T Consensus       141 ~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~-a~G~-rnp~Gla~d~~~g~l~v~d~g  217 (354)
T 3a9g_A          141 RFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIW-SYGH-RNPQGIDWHRASGVMVATEHG  217 (354)
T ss_dssp             EECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEE-EECC-SCCCEEEECTTTCCEEEEECC
T ss_pred             EECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEE-EEcc-CCcceEEEeCCCCCEEEEecC
Confidence            999998 56666443             2455555543210       00111 1233 235689999844565555333


Q ss_pred             CC---cEEEEeCCCCC----------CCCCCCCceEeccCCCCEEEEEEc-------CCCCCEEEEEeCCCcEEEEECCC
Q 010997          345 DN---SVRMFDRRNLT----------SNGVGSPINKFEGHSAAVLCVQWS-------PDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       345 dg---~i~iwd~~~~~----------~~~~~~~~~~~~~h~~~i~~l~~s-------p~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ..   .|.+...-..-          ......++..+.........++|.       .++. +|++.-..+.|...++..
T Consensus       218 ~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          218 PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECG
T ss_pred             CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECC
Confidence            22   24433211100          000012444442223467888884       4554 665666677888888765


Q ss_pred             CCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          405 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      .+...           .....+.+-...+.++++.|+|. |+++.
T Consensus       297 ~g~~~-----------~~~~~~~~~~~rp~~v~~~pDG~-lyv~~  329 (354)
T 3a9g_A          297 NMEVR-----------KISTFFKNVFGRLRDVVIDDDGG-ILIST  329 (354)
T ss_dssp             GGCEE-----------EEEEECTTTSCCEEEEEECTTSC-EEEEE
T ss_pred             CCccc-----------ceeeeccCCCCCeeEEEECCCCc-EEEEE
Confidence            32110           00111223345789999999885 45443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.15  E-value=0.92  Score=42.88  Aligned_cols=139  Identities=13%  Similarity=0.091  Sum_probs=83.2

Q ss_pred             CCeEEEEEccCCCccceeeeccC----CCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC------CCceEec
Q 010997          300 DSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG------SPINKFE  369 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~------~~~~~~~  369 (496)
                      ++.||.-++....  ..+.+..-    -..|..+..|| +|.+||..+. ..|.|..+.........      -..+.+.
T Consensus        40 ~n~iR~~~i~~~~--~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~  115 (452)
T 3pbp_A           40 DNIIRWYNVLTDS--LYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYS  115 (452)
T ss_dssp             TTEEEEEETTTCS--SCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEE
T ss_pred             CCEEEEEECCCCC--cceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEE
Confidence            4788888887543  23332221    23688899999 9999999864 47888888732111100      1112222


Q ss_pred             c------CCCCEEEEEEcCCCCC--EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCC
Q 010997          370 G------HSAAVLCVQWSPDKSS--VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS  441 (496)
Q Consensus       370 ~------h~~~i~~l~~sp~~~~--llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~  441 (496)
                      -      ...+|..+.|+|-+..  -|++-..|+.|++||+........    ..... .-.+....+...|.+++|..+
T Consensus       116 l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~----~L~k~-~~~fg~d~~~~ev~S~~Fg~~  190 (452)
T 3pbp_A          116 IDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI----VLNKP-NNSFGLDARVNDITDLEFSKD  190 (452)
T ss_dssp             GGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE----EESCC-CSEEESCSSCCCEEEEEECTT
T ss_pred             cCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc----chhcc-ccccCCCcccceEEEEEEcCC
Confidence            1      2578999999996532  456777899999999987211110    00000 112333444567889999996


Q ss_pred             CCcEEE
Q 010997          442 DPWTVV  447 (496)
Q Consensus       442 ~~~l~~  447 (496)
                      +-.|.+
T Consensus       191 ~lTLYv  196 (452)
T 3pbp_A          191 GLTLYC  196 (452)
T ss_dssp             SSCEEE
T ss_pred             CcEEEE
Confidence            554544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.80  E-value=0.41  Score=43.34  Aligned_cols=103  Identities=14%  Similarity=0.192  Sum_probs=53.5

Q ss_pred             ceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCCCCCC
Q 010997          292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV  361 (496)
Q Consensus       292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~  361 (496)
                      .+++.|+.+     ..+.+||+.+.....+...........++.+   ++.+++.|+.+     ..+.+||+.+..    
T Consensus       161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~----  233 (301)
T 2vpj_A          161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS----  233 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc----
Confidence            677777654     4588999887653222111111112223333   56777888764     468999988632    


Q ss_pred             CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997          362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  404 (496)
Q Consensus       362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~  404 (496)
                      ...+..+.........+.+  ++. |++.|+.+     ..|.+||+.+
T Consensus       234 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          234 WTTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTT
T ss_pred             EEECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCC
Confidence            2222112111111222222  344 67777755     3567788765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.69  E-value=1.3  Score=41.07  Aligned_cols=111  Identities=10%  Similarity=0.189  Sum_probs=65.0

Q ss_pred             CceeEEEEccCCCceEEEEc-----------------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-E
Q 010997          279 DTVEDVTFCPSSAQEFCSVG-----------------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-L  340 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~  340 (496)
                      ...+++.+.++| .++++..                 ..|.|.-+|.  ++  . ......-...+.|+|+| ++..| +
T Consensus       165 ~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~--~-~~~~~~l~~pNGia~sp-Dg~~lYv  237 (355)
T 3sre_A          165 PSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND--V-RVVAEGFDFANGINISP-DGKYVYI  237 (355)
T ss_dssp             SSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC--C-EEEEEEESSEEEEEECT-TSSEEEE
T ss_pred             CCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce--E-EEeecCCcccCcceECC-CCCEEEE
Confidence            457899999998 5666543                 1244555554  33  2 22223345679999999 77655 4


Q ss_pred             EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC-CCCCEEEEEeCC-CcEEEEE
Q 010997          341 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAED-GLLNIWD  401 (496)
Q Consensus       341 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~llas~~~d-g~i~iwd  401 (496)
                      +-+..+.|..||+.....   ......+ ...+..-.+++.+ +|. +.+++..+ +.|..|+
T Consensus       238 adt~~~~I~~~~~~~~g~---l~~~~~~-~~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          238 AELLAHKIHVYEKHANWT---LTPLRVL-SFDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             EEGGGTEEEEEEECTTSC---EEEEEEE-ECSSEEEEEEECTTTCC-EEEEEESCHHHHHSCC
T ss_pred             EeCCCCeEEEEEECCCCc---EecCEEE-eCCCCCceEEEeCCCCc-EEEEecCCceEEEEEC
Confidence            455678999999874110   1112233 2245677888888 477 56555433 3343343

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.69  E-value=1.5  Score=41.60  Aligned_cols=208  Identities=14%  Similarity=0.196  Sum_probs=128.0

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC---CcceeeeecCCCCc
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD---NAEFALAMCPTEPY  210 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~---~~v~~l~~~p~~~~  210 (496)
                      ++....+..|.-=+|..  .+.|+-.+. ..|+-|++....           .|...+..|..   .-|.....+++.++
T Consensus        99 lks~~~~e~VvfWkWis--~~~l~lVT~-taVyHWsi~~~s-----------~P~kvFdR~~~L~~~QIInY~~d~~~kW  164 (494)
T 1bpo_A           99 MKAHTMTDDVTFWKWIS--LNTVALVTD-NAVYHWSMEGES-----------QPVKMFDRHSSLAGCQIINYRTDAKQKW  164 (494)
T ss_dssp             EEEEECSSCCCEEEEEE--TTEEEEECS-SEEEEEESSSSC-----------CCEEEEECCGGGTTCEEEEEEECTTSSE
T ss_pred             hcceecCCCceEEEecC--CCeEEEEcC-CeeEEecccCCC-----------CchhheecchhcccceEEEEEECCCCCe
Confidence            34444456677777765  335655554 489999997531           55666665542   23556677788886


Q ss_pred             eEEec-------CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeE
Q 010997          211 VLSGG-------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVED  283 (496)
Q Consensus       211 l~sg~-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  283 (496)
                      ++-.|       -.|.+.+|..+....                                         +.+.+|......
T Consensus       165 ~~l~GI~~~~~~v~G~mQLYS~er~~s-----------------------------------------Q~ieGhaa~F~~  203 (494)
T 1bpo_A          165 LLLTGISAQQNRVVGAMQLYSVDRKVS-----------------------------------------QPIEGHAASFAQ  203 (494)
T ss_dssp             EEEEEEEEETTEEEEEEEEEESTTCCE-----------------------------------------EEECCSEEEEEE
T ss_pred             EEEEeecccCCcccceEEEeecccccc-----------------------------------------chheeeeeeeEE
Confidence            65333       357788888875432                                         567777665554


Q ss_pred             EEEccC--CCceEEEEcC---CCeEEEEEccCC---Ccccee----e---eccCCCCeEEEEecCCCCcEEEEEcCCCcE
Q 010997          284 VTFCPS--SAQEFCSVGD---DSCLILWDARVG---TSPVIK----V---EKAHDADLHCVDWNPLDDNLILTGSADNSV  348 (496)
Q Consensus       284 l~~~~~--~~~~l~s~~~---dg~i~iwd~~~~---~~~~~~----~---~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i  348 (496)
                      +...-.  ...+|+.+..   .+.++|.++...   ..+..+    .   ...-.+-..++..++ ....+..-+.-|.|
T Consensus       204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i  282 (494)
T 1bpo_A          204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYI  282 (494)
T ss_dssp             EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEE
T ss_pred             EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceE
Confidence            444211  1123443333   378999998653   111101    0   112345567888898 77788888899999


Q ss_pred             EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ++||+.+      +.++..-+-....|..-+-+....-++ .....|.|.--.+..
T Consensus       283 ~lyDleT------gt~i~~nrIs~~~iF~t~~~~~~~Gi~-~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          283 HLYDLET------GTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEEETTT------CCEEEEEECCSSCEEEEEEETTTTEEE-EEETTCEEEEEEECT
T ss_pred             EEEeccc------ceeeeeecccCCceEEecccCCCCcEE-EEccCceEEEEEEcc
Confidence            9999999      788877766667776666655544454 444677666655544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.59  E-value=0.42  Score=43.36  Aligned_cols=103  Identities=13%  Similarity=0.115  Sum_probs=53.3

Q ss_pred             ceEEEEcC---------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCC
Q 010997          292 QEFCSVGD---------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLT  357 (496)
Q Consensus       292 ~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~  357 (496)
                      .+++.|+.         -..+.+||+.+.....+.........-.++.+   ++.+++.|+.+     ..+.+||+.+..
T Consensus       151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~  227 (306)
T 3ii7_A          151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLNE  227 (306)
T ss_dssp             EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred             EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence            56666653         34588999887753222111111111222333   46777777754     358899988632


Q ss_pred             CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997          358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  404 (496)
Q Consensus       358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~  404 (496)
                          ...+..+.........+.+  ++ .|++.|+.+     ..+.+||+..
T Consensus       228 ----W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          228 ----WKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             ----EEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTT
T ss_pred             ----EEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCC
Confidence                2222222211222223333  33 377788754     4578888876

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.57  E-value=0.3  Score=44.30  Aligned_cols=103  Identities=13%  Similarity=0.129  Sum_probs=52.7

Q ss_pred             ceEEEEcCC-------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCCCC
Q 010997          292 QEFCSVGDD-------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSN  359 (496)
Q Consensus       292 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~~~  359 (496)
                      .+++.|+.+       ..+.+||+.+.....+...........++.+   ++.+++.|+.+     ..+.+||+.+..  
T Consensus       157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~--  231 (302)
T 2xn4_A          157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNA--  231 (302)
T ss_dssp             EEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTE--
T ss_pred             EEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCC--
Confidence            566666543       3588999887653222111111112223333   56788888765     368899988622  


Q ss_pred             CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC-----cEEEEECCC
Q 010997          360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK  404 (496)
Q Consensus       360 ~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg-----~i~iwd~~~  404 (496)
                        ...+..+.........+.+  ++. |++.|+.++     .|.+||+.+
T Consensus       232 --W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          232 --WRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             --EEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTT
T ss_pred             --EeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCC
Confidence              1212111111111112222  343 677777553     478888876

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.21  E-value=1.1  Score=40.68  Aligned_cols=103  Identities=7%  Similarity=0.058  Sum_probs=52.9

Q ss_pred             ceEEEEcCC--------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-C-----CcEEEEeCCCCC
Q 010997          292 QEFCSVGDD--------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-D-----NSVRMFDRRNLT  357 (496)
Q Consensus       292 ~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-d-----g~i~iwd~~~~~  357 (496)
                      .+++.|+.+        ..+.+||..+.+...............++.+   ++.+++.|+. +     ..+.+||+.+..
T Consensus       100 ~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A          100 SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH---MDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE---CCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            567777642        4588999887652221111111112222332   5677778776 2     468899988632


Q ss_pred             CCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC-----cEEEEECCC
Q 010997          358 SNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG-----LLNIWDYEK  404 (496)
Q Consensus       358 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg-----~i~iwd~~~  404 (496)
                          ...+..+......-..+.+  ++. |++.|+.++     .+.+||+.+
T Consensus       177 ----W~~~~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          177 ----WKELAPMQTARSLFGATVH--DGR-IIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             ----EEECCCCSSCCBSCEEEEE--TTE-EEEEEEECSSSEEEEEEEEETTT
T ss_pred             ----EEECCCCCCchhceEEEEE--CCE-EEEEeccCCCCccceEEEEECCC
Confidence                2222222111111122222  343 777777654     478888876

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.17  E-value=2.2  Score=40.42  Aligned_cols=197  Identities=13%  Similarity=0.135  Sum_probs=115.0

Q ss_pred             ecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCC
Q 010997          148 ELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD  227 (496)
Q Consensus       148 ~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~  227 (496)
                      .+| ..++||--+ ..++.|||+++.            ..+..+.-..  .|.-=.|-.+. .|+-.+ +..|.-|++..
T Consensus        73 MnP-~~~iiALra-g~~lQiFnle~K------------~klks~~~~e--~VvfWkWis~~-~l~lVT-~taVyHWsi~~  134 (494)
T 1bpo_A           73 MNP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTD--DVTFWKWISLN-TVALVT-DNAVYHWSMEG  134 (494)
T ss_dssp             ECS-SSSCEEEEE-TTEEEEEETTTT------------EEEEEEECSS--CCCEEEEEETT-EEEEEC-SSEEEEEESSS
T ss_pred             eCC-CCcEEEEec-CCeEEEEchHHh------------hhhcceecCC--CceEEEecCCC-eEEEEc-CCeeEEecccC
Confidence            356 566777665 569999999987            2223333333  34444554333 343333 56899999864


Q ss_pred             ccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC----CceeEEEEccCCCceEEEEc-----
Q 010997          228 HITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE----DTVEDVTFCPSSAQEFCSVG-----  298 (496)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~-----  298 (496)
                      .                                       ..|.+.+..|.    ..|..-..+++...++++|-     
T Consensus       135 ~---------------------------------------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~  175 (494)
T 1bpo_A          135 E---------------------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN  175 (494)
T ss_dssp             S---------------------------------------CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETT
T ss_pred             C---------------------------------------CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCC
Confidence            1                                       12234444332    34555566677644444442     


Q ss_pred             -CCCeEEEEEccCCCccceeeeccCCCCeEEEEecC--CCCcEEEEEcCC---CcEEEEeCCCC-CCCCC-CCC-ceEe-
Q 010997          299 -DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP--LDDNLILTGSAD---NSVRMFDRRNL-TSNGV-GSP-INKF-  368 (496)
Q Consensus       299 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~~l~sgs~d---g~i~iwd~~~~-~~~~~-~~~-~~~~-  368 (496)
                       -.|.+.+|..+...   ...+.+|......+.+.-  ....+|+.+...   +.++|.++... ..... .+. +..+ 
T Consensus       176 ~v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~f  252 (494)
T 1bpo_A          176 RVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF  252 (494)
T ss_dssp             EEEEEEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCC
T ss_pred             cccceEEEeeccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeC
Confidence             34789999987665   556678877666665542  112355555543   78999999764 11110 011 1111 


Q ss_pred             --ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          369 --EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       369 --~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                        ..-.+-..++..|+.... +..-..-|.|++||+.+.
T Consensus       253 ppe~~~DFPvamqvs~kygv-iyviTK~G~i~lyDleTg  290 (494)
T 1bpo_A          253 PPEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETG  290 (494)
T ss_dssp             CTTSTTCCEEEEEEETTTTE-EEEEETTSEEEEEETTTC
T ss_pred             CcccccCceeEEEecccCCE-EEEEecCceEEEEecccc
Confidence              112344568888888774 457777999999999996

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.85  E-value=1.9  Score=47.34  Aligned_cols=208  Identities=13%  Similarity=0.222  Sum_probs=113.8

Q ss_pred             eeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC--CC
Q 010997          202 LAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH--ED  279 (496)
Q Consensus       202 l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~  279 (496)
                      .-.+|..+.|+--+ ..++.|+|+++...                                           +..|  ..
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~k-------------------------------------------lks~~~~e  106 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSK-------------------------------------------MKAHTMTD  106 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhh-------------------------------------------hcccccCC
Confidence            34677776665544 67999999986432                                           2222  23


Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccC----CCCeEEEEecCCCCcEEEEEc-------CCCcE
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----DADLHCVDWNPLDDNLILTGS-------ADNSV  348 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~i~~sp~~~~~l~sgs-------~dg~i  348 (496)
                      +|.-=.|-..  +.|+..+ +..|..|++..... +.+.+..|    ...|..-..++ +..+++..|       -.|.+
T Consensus       107 ~VvfWkWis~--~~l~lVT-~~aVyHW~~~~~s~-P~k~fdR~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~m  181 (1630)
T 1xi4_A          107 DVTFWKWISL--NTVALVT-DNAVYHWSMEGESQ-PVKMFDRHSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAM  181 (1630)
T ss_pred             CceEEEecCC--CeeEEEc-CCeEEEeccCCCCc-cHHHHhcchhcccCeeEEeeeCC-CCCeEEEEeeccCCCccccee
Confidence            4544455433  3444443 46899999975433 33344444    46677777788 666665433       34788


Q ss_pred             EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEc--CCCCCEEEEEeC---CCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997          349 RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS--PDKSSVFGSSAE---DGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  423 (496)
Q Consensus       349 ~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~s--p~~~~llas~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  423 (496)
                      .+|....       ..-..+.||.+....+...  +....+|+-+..   .+.++|-++............   ....+.
T Consensus       182 QLyS~er-------~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k---k~~~~~  251 (1630)
T 1xi4_A          182 QLYSVDR-------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---KAVDVF  251 (1630)
T ss_pred             eeeeccc-------ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc---cccccc
Confidence            8998886       4555677776665444443  222335543332   368999998653111100000   011111


Q ss_pred             EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHH
Q 010997          424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAEL  482 (496)
Q Consensus       424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l  482 (496)
                      +....-.+--.++..++..+.+.+-+-        -|.|+++|+.      ++.++..-
T Consensus       252 ~~~~~~~Dfpv~~~vs~k~g~iy~itk--------~G~~~~~d~~------t~~~i~~~  296 (1630)
T 1xi4_A          252 FPPEAQNDFPVAMQISEKHDVVFLITK--------YGYIHLYDLE------TGTCIYMN  296 (1630)
T ss_pred             CCcccccCcceEEEeccccCEEEEEec--------CceEEEEecc------cchhhhhc
Confidence            111122333446677776554443322        2899999998      56555443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.63  E-value=0.77  Score=42.79  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=21.5

Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEecC
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSIQ  226 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~  226 (496)
                      ...|+|.|+|++|+.+...|.|++++..
T Consensus        20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~   47 (353)
T 2g8s_A           20 PWALAFLPDNHGMLITLRGGELRHWQAG   47 (353)
T ss_dssp             EEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred             cEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence            3799999999844455568999998853

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.62  E-value=0.99  Score=41.76  Aligned_cols=154  Identities=14%  Similarity=0.207  Sum_probs=80.2

Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  278 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  278 (496)
                      -++|+|.|+|.+|++--..|.|++++..++........                                  -..+....
T Consensus        34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~----------------------------------~~v~~~g~   79 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEV----------------------------------PGVSPSGE   79 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------------------------------TTCCCBTT
T ss_pred             ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeeccc----------------------------------CceeecCC
Confidence            47999999998777665589999987654321100000                                  01122234


Q ss_pred             CceeEEEEccC---CCceEEEE--cCCCeEEEEEccCCC--------ccce-eeec-cCCCCeEEEEecCCCCcEEEEEc
Q 010997          279 DTVEDVTFCPS---SAQEFCSV--GDDSCLILWDARVGT--------SPVI-KVEK-AHDADLHCVDWNPLDDNLILTGS  343 (496)
Q Consensus       279 ~~v~~l~~~~~---~~~~l~s~--~~dg~i~iwd~~~~~--------~~~~-~~~~-~~~~~v~~i~~sp~~~~~l~sgs  343 (496)
                      .....|+++|+   +..++++-  ..++.|.-|.+....        ...+ ..+. ........|+|.| ++.+.++.+
T Consensus        80 ~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~G  158 (347)
T 3das_A           80 GGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTG  158 (347)
T ss_dssp             BSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECB
T ss_pred             CCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEEC
Confidence            56789999995   32444432  245566666665421        0111 1111 1122356799999 787777644


Q ss_pred             C-------------CCcEEEEeCCCCCC--CCC-CCCceEeccCCCCEEEEEEcCCCCCEEEE
Q 010997          344 A-------------DNSVRMFDRRNLTS--NGV-GSPINKFEGHSAAVLCVQWSPDKSSVFGS  390 (496)
Q Consensus       344 ~-------------dg~i~iwd~~~~~~--~~~-~~~~~~~~~h~~~i~~l~~sp~~~~llas  390 (496)
                      .             .|.|.-++....-.  +.- ...+. -.+|.. ...++|+|++. |+++
T Consensus       159 d~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~-a~G~RN-p~Gla~dp~G~-L~~~  218 (347)
T 3das_A          159 ESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVY-SYGHRN-VQGLAWDDKQR-LFAS  218 (347)
T ss_dssp             CTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEE-EBCCSB-CCEEEECTTCC-EEEE
T ss_pred             CCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEE-eeCCCC-cceEEECCCCC-EEEE
Confidence            2             24444444432100  000 01111 124544 45899999876 5533

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.57  E-value=2.9  Score=38.78  Aligned_cols=65  Identities=9%  Similarity=0.015  Sum_probs=37.7

Q ss_pred             CCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEE
Q 010997          324 ADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS  391 (496)
Q Consensus       324 ~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~  391 (496)
                      .....++|.  ++.++++.-..+.|...++..............+-.-...+..+++.|+|. |+++.
T Consensus       268 ~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~~  332 (352)
T 2ism_A          268 FPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA-LYVTT  332 (352)
T ss_dssp             CCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC-EEEEE
T ss_pred             CCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc-EEEEE
Confidence            356677773  577777777777888888764110000000122212235788999999997 55444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.42  E-value=4.1  Score=44.87  Aligned_cols=196  Identities=13%  Similarity=0.130  Sum_probs=105.6

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCc
Q 010997          149 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH  228 (496)
Q Consensus       149 ~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~  228 (496)
                      +| ..++||--+ ..++.|||+++..            .+..+.-..  .|.-=.|-.... |+-.+ +..|.-|++...
T Consensus        74 nP-~~~iiALra-g~~lQiFnl~~k~------------klks~~~~e--~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~  135 (1630)
T 1xi4_A           74 NP-ASKVIALKA-GKTLQIFNIEMKS------------KMKAHTMTD--DVTFWKWISLNT-VALVT-DNAVYHWSMEGE  135 (1630)
T ss_pred             CC-CcceEEEec-CCeEEEeehHHhh------------hhcccccCC--CceEEEecCCCe-eEEEc-CCeEEEeccCCC
Confidence            55 556777665 5699999998872            222222222  244445543333 33332 568999999641


Q ss_pred             cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC----CCceeEEEEccCCCceEEEEc------
Q 010997          229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH----EDTVEDVTFCPSSAQEFCSVG------  298 (496)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~l~s~~------  298 (496)
                      .                                       .|.+.+..|    ...|..-..+++...++++|-      
T Consensus       136 s---------------------------------------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~  176 (1630)
T 1xi4_A          136 S---------------------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  176 (1630)
T ss_pred             C---------------------------------------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCc
Confidence            1                                       111222222    234555555666644444432      


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEec--CCCCcEEEEEcC---CCcEEEEeCCCC-CCCCC--CCCceEecc
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN--PLDDNLILTGSA---DNSVRMFDRRNL-TSNGV--GSPINKFEG  370 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s--p~~~~~l~sgs~---dg~i~iwd~~~~-~~~~~--~~~~~~~~~  370 (496)
                      -.|.+.+|....+.   ...+.+|.+....+...  +....+++.+..   .+.++|.++... ..++.  .+.+..+..
T Consensus       177 v~G~mQLyS~er~~---sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~  253 (1630)
T 1xi4_A          177 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  253 (1630)
T ss_pred             ccceeeeeeccccc---chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC
Confidence            45889999987665   33455666555444442  212234443332   268999998764 11110  011111111


Q ss_pred             ---CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          371 ---HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       371 ---h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                         -..-..++..++.... +..-+.-|.|++||+.++
T Consensus       254 ~~~~~Dfpv~~~vs~k~g~-iy~itk~G~~~~~d~~t~  290 (1630)
T 1xi4_A          254 PEAQNDFPVAMQISEKHDV-VFLITKYGYIHLYDLETG  290 (1630)
T ss_pred             cccccCcceEEEeccccCE-EEEEecCceEEEEecccc
Confidence               1233457777877664 446677899999999985

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.39  E-value=0.63  Score=39.69  Aligned_cols=62  Identities=10%  Similarity=0.088  Sum_probs=39.3

Q ss_pred             eeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc-----eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcE
Q 010997          281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVEKAHDADLHCVDWNPLDDNLILTGSADNSV  348 (496)
Q Consensus       281 v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i  348 (496)
                      ..++.|.|++ .+.++  .||.|.-++-.+.....     ...-...=..+..|.+.| ++.+.++.  |+.+
T Consensus        90 F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~l  156 (236)
T 1tl2_A           90 FQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQF  156 (236)
T ss_dssp             CSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEE
T ss_pred             ceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcE
Confidence            4788999998 55555  56988877753322110     111111115679999999 88888877  7764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.16  E-value=0.94  Score=41.09  Aligned_cols=103  Identities=13%  Similarity=0.099  Sum_probs=52.5

Q ss_pred             ceEEEEcCC-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCCCCCCCC
Q 010997          292 QEFCSVGDD-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRNLTSNGV  361 (496)
Q Consensus       292 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~  361 (496)
                      .+++.|+.+     ..+.+||+.+.+...+...........++.+   ++.+++.|+.+     ..+.+||+.+..    
T Consensus       170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~----  242 (308)
T 1zgk_A          170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET----  242 (308)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred             EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc----
Confidence            677777654     4588999877652221111111112223333   56777888765     468999988632    


Q ss_pred             CCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997          362 GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  404 (496)
Q Consensus       362 ~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~  404 (496)
                      ...+..+.........+.+  ++. |++.|+.+     ..|.+||+.+
T Consensus       243 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          243 WTFVAPMKHRRSALGITVH--QGR-IYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTT
T ss_pred             EEECCCCCCCccceEEEEE--CCE-EEEEcCcCCCcccceEEEEcCCC
Confidence            2222222111111122222  333 67777643     3467777765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.77  E-value=3.8  Score=37.14  Aligned_cols=103  Identities=8%  Similarity=0.120  Sum_probs=50.6

Q ss_pred             ceEEEEcCC-------CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC------CCcEEEEeCCCCCC
Q 010997          292 QEFCSVGDD-------SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDRRNLTS  358 (496)
Q Consensus       292 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~------dg~i~iwd~~~~~~  358 (496)
                      .+++.|+.+       ..+.+||..+.+.............-.++..   ++.+++.|+.      -..+.+||+.+.. 
T Consensus       111 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-  186 (318)
T 2woz_A          111 KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH---NGMIYCLGGKTDDKKCTNRVFIYNPKKGD-  186 (318)
T ss_dssp             EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE---TTEEEEECCEESSSCBCCCEEEEETTTTE-
T ss_pred             EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE---CCEEEEEcCCCCCCCccceEEEEcCCCCE-
Confidence            667777654       3578888877652211111110111122222   5677777764      2358899988732 


Q ss_pred             CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCC-----CcEEEEECCC
Q 010997          359 NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAED-----GLLNIWDYEK  404 (496)
Q Consensus       359 ~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~d-----g~i~iwd~~~  404 (496)
                         ...+..+.........+.+  ++ .|++.|+.+     ..+.+||+.+
T Consensus       187 ---W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          187 ---WKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             ---EEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTT
T ss_pred             ---EEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCC
Confidence               2222111111111122222  33 367777653     3467888876

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.67  E-value=4.7  Score=38.88  Aligned_cols=29  Identities=14%  Similarity=0.111  Sum_probs=21.1

Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEecCC
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSIQD  227 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~  227 (496)
                      .++|+|.|+|+++++-...+.|.+++..+
T Consensus        29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~   57 (454)
T 1cru_A           29 PHALLWGPDNQIWLTERATGKILRVNPES   57 (454)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             ceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence            47999999998776654445788887543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=93.55  E-value=5.8  Score=43.32  Aligned_cols=203  Identities=6%  Similarity=0.013  Sum_probs=106.1

Q ss_pred             CceeEEEecC---CCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC
Q 010997          141 GEVNRIRELP---QNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT  207 (496)
Q Consensus       141 ~~V~~l~~~p---~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~  207 (496)
                      ..+.|++...   +...+|+.|+          ..|.|.+|++...            +..........++|++|+-- +
T Consensus       829 E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~------------kL~lv~~~~v~g~v~al~~~-~  895 (1158)
T 3ei3_A          829 EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG------------KLQTVAEKEVKGAVYSMVEF-N  895 (1158)
T ss_dssp             EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT------------EEEEEEEEEESSCEEEEEEE-T
T ss_pred             cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC------------EEEEEEEEEcCCcCEEEeee-C
Confidence            3455555332   3356888886          3578999998733            22222222223467777643 3


Q ss_pred             CCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997          208 EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  287 (496)
Q Consensus       208 ~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  287 (496)
                      | +|++|- ..+|++|++......                                        ..-..+-..|..+...
T Consensus       896 g-~Lla~i-g~~l~vy~l~~~~~L----------------------------------------~~~~~~~~~i~~~~l~  933 (1158)
T 3ei3_A          896 G-KLLASI-NSTVRLYEWTTEKEL----------------------------------------RTECNHYNNIMALYLK  933 (1158)
T ss_dssp             T-EEEEEE-TTEEEEEEECTTSCE----------------------------------------EEEEEECCCSCEEEEE
T ss_pred             C-EEEEEc-CCEEEEEECCCCceE----------------------------------------EEEeeccccEEEEEEe
Confidence            4 454443 479999998643210                                        0000001112222222


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCC-CCCc
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGV-GSPI  365 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~~  365 (496)
                      ..+ ++++.|..-..|.++..+......... ...+...++++.+-.  ...++.+..+|.|.++.......... +..+
T Consensus       934 ~~~-~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L 1010 (1158)
T 3ei3_A          934 TKG-DFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDSAATTDEERQHL 1010 (1158)
T ss_dssp             EET-TEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECTTCCSTTGGGBE
T ss_pred             ccC-CEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCCCCCCcccccee
Confidence            234 578888777777776554433212221 123556788888864  45788899999999987664221110 1111


Q ss_pred             e-EeccC-CCCEEEEE---EcCCC--------CCEEEEEeCCCcEEEEE
Q 010997          366 N-KFEGH-SAAVLCVQ---WSPDK--------SSVFGSSAEDGLLNIWD  401 (496)
Q Consensus       366 ~-~~~~h-~~~i~~l~---~sp~~--------~~llas~~~dg~i~iwd  401 (496)
                      . .-.-| ...|+++.   +.+.+        ...++-++.+|.|-+.-
T Consensus      1011 ~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~ 1059 (1158)
T 3ei3_A         1011 QEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVT 1059 (1158)
T ss_dssp             EEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEE
T ss_pred             eeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEE
Confidence            1 11122 44567765   33322        22344667788877653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.50  E-value=0.69  Score=39.43  Aligned_cols=105  Identities=6%  Similarity=0.087  Sum_probs=62.2

Q ss_pred             CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCC--------eEEEEecCCCCcEEEEEcCCCcEEE
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD--------LHCVDWNPLDDNLILTGSADNSVRM  350 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------v~~i~~sp~~~~~l~sgs~dg~i~i  350 (496)
                      ..+.+++|+|++ .+.+.  .+|.+.-.+..+....  .-+ +....        ..++.|.| ++.+.++  .||.|.-
T Consensus        41 ~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~--~W~-~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr  111 (236)
T 1tl2_A           41 SNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDND--NWM-GRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYK  111 (236)
T ss_dssp             TTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC--CHH-HHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEE
T ss_pred             ccceeEEECCCc-cEEEE--eCCeEEEECCCCCCcc--ccc-ccccEecccccccceEEEECC-CCCEEEe--CCCEEEE
Confidence            367799999987 54444  7787766665443311  111 11222        47899999 8888887  5698887


Q ss_pred             EeCCCCCCCCCCCCce---Ee-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997          351 FDRRNLTSNGVGSPIN---KF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLN  398 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~---~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~  398 (496)
                      ++..+...   ..-+.   .+ ..-=..+..|.|.|+|. |.|..  |+.+.
T Consensus       112 ~~pP~~~~---~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~ly  157 (236)
T 1tl2_A          112 ASPPQSDT---DNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFY  157 (236)
T ss_dssp             ESCCCSTT---CCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEE
T ss_pred             eCCCcCCC---CceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEE
Confidence            77533111   11111   11 11114679999999997 66544  77743

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.98  E-value=2  Score=39.05  Aligned_cols=61  Identities=8%  Similarity=0.143  Sum_probs=34.8

Q ss_pred             ceEEEEcC-C-----CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCC-----cEEEEeCCC
Q 010997          292 QEFCSVGD-D-----SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADN-----SVRMFDRRN  355 (496)
Q Consensus       292 ~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg-----~i~iwd~~~  355 (496)
                      .+++.|+. +     ..+.+||+.+.+...+...........++.+   ++.+++.|+.++     .+.+||+.+
T Consensus       150 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          150 LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             EEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             EEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCC
Confidence            56777765 2     4688999887652222111111112223333   567778877654     588899876

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.76  E-value=7.3  Score=37.52  Aligned_cols=119  Identities=8%  Similarity=0.146  Sum_probs=63.6

Q ss_pred             eeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec------cCCCCeEEEEecCC---CCcEEEEEc
Q 010997          273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK------AHDADLHCVDWNPL---DDNLILTGS  343 (496)
Q Consensus       273 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~i~~sp~---~~~~l~sgs  343 (496)
                      .+...-.....|+|.|++ .++++-...+.|++++...+....+..+.      .....+..|+|+|.   ++.+.++-+
T Consensus        21 ~~a~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s   99 (454)
T 1cru_A           21 VILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT   99 (454)
T ss_dssp             EEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred             EEECCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence            333334567799999999 66666555457888876544422222221      12456789999993   344444433


Q ss_pred             C------------CCcEEEEeCCCCCCC-CCCCCce-Eec-cCCCCEEEEEEcCCCCCEEEEEeC
Q 010997          344 A------------DNSVRMFDRRNLTSN-GVGSPIN-KFE-GHSAAVLCVQWSPDKSSVFGSSAE  393 (496)
Q Consensus       344 ~------------dg~i~iwd~~~~~~~-~~~~~~~-~~~-~h~~~i~~l~~sp~~~~llas~~~  393 (496)
                      .            ...|.-|+....... ...+.+. .+. ........|+|.|+|. |+++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd  163 (454)
T 1cru_A          100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGD  163 (454)
T ss_dssp             EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECC
T ss_pred             ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECC
Confidence            2            234555554321000 0001111 122 1123578999999997 6656543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=92.75  E-value=6.1  Score=36.57  Aligned_cols=62  Identities=11%  Similarity=0.012  Sum_probs=36.2

Q ss_pred             CCEEEEEEcC-------CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997          373 AAVLCVQWSP-------DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT  445 (496)
Q Consensus       373 ~~i~~l~~sp-------~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l  445 (496)
                      ..+..++|..       ++. +|++.-..+.|...++... ...           .....+.+....+.++++.|+|..+
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~-l~v~~~~~~~v~~~~~~~~-~~~-----------~~~~~~~~~~~rp~~v~~~pdG~ly  337 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQK-LFIGALKDKDVIVMSVNGD-KVT-----------EDGRILTDRGQRIRDVRTGPDGYLY  337 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTE-EEEEETTTTEEEEEEEETT-EEE-----------EEEEESGGGCCCEEEEEECTTSCEE
T ss_pred             cCcceeEEECCccCcccCCc-EEEEEccCCEEEEEEeCCC-eEe-----------eeEEcccCCCCceeEEEECCCCcEE
Confidence            4677888864       344 5656656777777777642 111           0001112223478999999988744


Q ss_pred             EE
Q 010997          446 VV  447 (496)
Q Consensus       446 ~~  447 (496)
                      ++
T Consensus       338 v~  339 (353)
T 2g8s_A          338 VL  339 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.23  E-value=3.5  Score=37.42  Aligned_cols=61  Identities=15%  Similarity=0.313  Sum_probs=33.6

Q ss_pred             ceEEEEcC------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----CcEEEEeCCC
Q 010997          292 QEFCSVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----NSVRMFDRRN  355 (496)
Q Consensus       292 ~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----g~i~iwd~~~  355 (496)
                      .+++.|+.      -..+.+||+.+.+...+...........++.+   ++.+++.|+.+     ..+.+||+.+
T Consensus       160 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             EEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             EEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCC
Confidence            56677664      23589999987653222111111111222333   56777777654     3577889876

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=91.70  E-value=6.2  Score=36.38  Aligned_cols=51  Identities=14%  Similarity=0.019  Sum_probs=26.8

Q ss_pred             CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC------CCcEEEEeC
Q 010997          301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA------DNSVRMFDR  353 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~------dg~i~iwd~  353 (496)
                      ..+.+||..+.+...+.........-.+++..  ++.+++.|+.      ...+.+||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEe
Confidence            57899999877633222221111110223332  4667777764      345777876

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.28  E-value=13  Score=38.17  Aligned_cols=66  Identities=11%  Similarity=0.178  Sum_probs=39.0

Q ss_pred             CCCceEEEEcCCC--eEEEEEccCCCccceee---eccCCCCeEEEEecCCCCcEEEEEcC--C-----CcEEEEeCCC
Q 010997          289 SSAQEFCSVGDDS--CLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDDNLILTGSA--D-----NSVRMFDRRN  355 (496)
Q Consensus       289 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~---~~~~~~~v~~i~~sp~~~~~l~sgs~--d-----g~i~iwd~~~  355 (496)
                      ++ .+++.|+.++  .+.+||..+........   .........++.+....+.+++.|+.  +     ..+.+||+.+
T Consensus       500 ~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~  577 (695)
T 2zwa_A          500 DG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA  577 (695)
T ss_dssp             TS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred             CC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence            44 6777777654  68999998765322211   11112222345555523677788876  2     3588999887

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.80  E-value=17  Score=33.50  Aligned_cols=252  Identities=11%  Similarity=0.125  Sum_probs=124.6

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE----ecCCCCcceeeeecCC---CCce
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL----TGHQDNAEFALAMCPT---EPYV  211 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l----~~h~~~~v~~l~~~p~---~~~l  211 (496)
                      --.....|+|.| ++.++++--..|.|++++...+..          ..+..+    ..... ....|+++|+   +.+|
T Consensus        30 gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~----------~~v~~~~~v~~~g~~-GllGia~~Pdf~~~g~l   97 (347)
T 3das_A           30 GLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRK----------TELGEVPGVSPSGEG-GLLGIALSPDYASDHMV   97 (347)
T ss_dssp             CCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE----------EEEEECTTCCCBTTB-SEEEEEECTTHHHHCEE
T ss_pred             CCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcE----------eeecccCceeecCCC-CceeeEeccccccCCEE
Confidence            345678999999 788887766589999998654411          011111    11122 3579999996   3334


Q ss_pred             EEe---cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCC-eeeee-cCCCceeEEEE
Q 010997          212 LSG---GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGP-RGIYN-GHEDTVEDVTF  286 (496)
Q Consensus       212 ~sg---~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~h~~~v~~l~~  286 (496)
                      ...   ..++.|.-|.+........                              .....+. +..+. ........|.|
T Consensus        98 Yv~yt~~~~~~v~R~~~~~~~~~~~------------------------------~~~~~~~i~~~~p~~~~H~g~~l~f  147 (347)
T 3das_A           98 YAYFTSASDNRIVRMLYDEKKPSGE------------------------------QLGAPDTVFRGIPKGVIHNGGRIAF  147 (347)
T ss_dssp             EEEEECSSSEEEEEEEBCTTSCTTC------------------------------CBCCCEEEEEEECCCSSCCCCCEEE
T ss_pred             EEEEecCCCCEEEEEEeCCCCcccc------------------------------cCCCcEEEEEcCCCCCCccCccccC
Confidence            332   2344555555443110000                              0000000 00111 11123467999


Q ss_pred             ccCCCceEEEEcC-------------CCeEEEEEccCCC---cc---ceeeeccCCCCeEEEEecCCCCcEEEEEc-CCC
Q 010997          287 CPSSAQEFCSVGD-------------DSCLILWDARVGT---SP---VIKVEKAHDADLHCVDWNPLDDNLILTGS-ADN  346 (496)
Q Consensus       287 ~~~~~~~l~s~~~-------------dg~i~iwd~~~~~---~~---~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg  346 (496)
                      .|++ .++++.++             -|.|.-.+....-   .+   ......+|. ....++|+| ++.++++=. .|+
T Consensus       148 gpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp-~G~L~~~d~g~~~  224 (347)
T 3das_A          148 GPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDD-KQRLFASEFGQDT  224 (347)
T ss_dssp             CTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECT-TCCEEEEECCSSS
T ss_pred             CCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECC-CCCEEEEecCCCC
Confidence            9998 66666542             2444444443210   00   011122443 356889999 777666532 233


Q ss_pred             cEEEEeCCCCCC------------CCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCC
Q 010997          347 SVRMFDRRNLTS------------NGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR  414 (496)
Q Consensus       347 ~i~iwd~~~~~~------------~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~  414 (496)
                      -=.|--+.....            .....++..+..+......++|.. +. +|...-..+.|....+...+. .     
T Consensus       225 ~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~-~-----  296 (347)
T 3das_A          225 WDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAA-A-----  296 (347)
T ss_dssp             CEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-TE-EEEEESTTCSEEEEEEETTEE-S-----
T ss_pred             CceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-Cc-eeeccccCCEEEEEEecCCce-e-----
Confidence            222222221100            001234445544435677888874 44 665665566666666654211 0     


Q ss_pred             CCCCCCeeEEEecCCCCCcceEEecCCCCcEEEE
Q 010997          415 TTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVS  448 (496)
Q Consensus       415 ~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s  448 (496)
                         ...+  ..+.+....+.+|+..|+|..++++
T Consensus       297 ---~~~e--~~l~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          297 ---ADPQ--AFLEGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             ---SCCE--EESTTTSSCEEEEEEEETTEEEEEE
T ss_pred             ---cceE--EeecCCCCCccEEEECCCCcEEEEE
Confidence               0111  1233445689999999988654443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=87.50  E-value=18  Score=33.44  Aligned_cols=63  Identities=10%  Similarity=-0.005  Sum_probs=40.4

Q ss_pred             CCeEEEEecC------CCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc--eEe-ccCCCCEEEEEEcCCCCCEEEEEe
Q 010997          324 ADLHCVDWNP------LDDNLILTGSADNSVRMFDRRNLTSNGVGSPI--NKF-EGHSAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       324 ~~v~~i~~sp------~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--~~~-~~h~~~i~~l~~sp~~~~llas~~  392 (496)
                      .....++|..      .++.++++.-..+.|...++...     +...  ..+ .+....+..+++.|+|. |+++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~-----g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN-----MEVRKISTFFKNVFGRLRDVVIDDDGG-ILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG-----GCEEEEEEECTTTSCCEEEEEECTTSC-EEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC-----CcccceeeeccCCCCCeeEEEECCCCc-EEEEEe
Confidence            4577888842      25777777777788888888741     1111  222 22245789999999996 665553

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.05  E-value=4.5  Score=37.32  Aligned_cols=22  Identities=9%  Similarity=0.086  Sum_probs=15.5

Q ss_pred             CCcEEEEEeC-C---------CcEEEEeCCCC
Q 010997          152 NTKIVATHTD-S---------PDVLIWDVEAQ  173 (496)
Q Consensus       152 ~~~~lat~~~-d---------g~i~iwd~~~~  173 (496)
                      ++.+++.|+. +         ..+.+||..+.
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5667777765 2         46889998775

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=83.82  E-value=28  Score=32.45  Aligned_cols=72  Identities=14%  Similarity=0.054  Sum_probs=35.9

Q ss_pred             CceeEEEEccCC-CceEEEEcCCCeEEEEEccCCCccceeeec----------------cCCCCeEEEEecCCCCcEEEE
Q 010997          279 DTVEDVTFCPSS-AQEFCSVGDDSCLILWDARVGTSPVIKVEK----------------AHDADLHCVDWNPLDDNLILT  341 (496)
Q Consensus       279 ~~v~~l~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~v~~i~~sp~~~~~l~s  341 (496)
                      ..|.++++.|.+ +..+..++..+.|...+-.......+....                .....+.+|.++|.+...|..
T Consensus       115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v  194 (394)
T 3b7f_A          115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI  194 (394)
T ss_dssp             CEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred             cceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence            357888888742 345666666665554432111111111000                122457899999844444455


Q ss_pred             EcCCCcEEE
Q 010997          342 GSADNSVRM  350 (496)
Q Consensus       342 gs~dg~i~i  350 (496)
                      +..++.|..
T Consensus       195 g~~~ggl~~  203 (394)
T 3b7f_A          195 GMSSGGVFE  203 (394)
T ss_dssp             EEETBEEEE
T ss_pred             EECCCCEEE
Confidence            544443433

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.42  E-value=16  Score=37.47  Aligned_cols=65  Identities=14%  Similarity=0.265  Sum_probs=34.7

Q ss_pred             CCcEEEEEeCCC------cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC--cEEEE
Q 010997          152 NTKIVATHTDSP------DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK--SVVLW  223 (496)
Q Consensus       152 ~~~~lat~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg--~i~iw  223 (496)
                      ++.+++.|+.++      .+.+||..+..-.          ....+....  .-.+++...++..++.|+.++  .+.+|
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~----------~~~~~p~~R--~~h~~~~~~~~~iyv~GG~~~~~~v~~y  518 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWS----------MIKSLSHTR--FRHSACSLPDGNVLILGGVTEGPAMLLY  518 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEE----------ECCCCSBCC--BSCEEEECTTSCEEEECCBCSSCSEEEE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEE----------ECCCCCCCc--ccceEEEEcCCEEEEECCCCCCCCEEEE
Confidence            556777776532      5788888765111          000011100  112223323677788887655  68888


Q ss_pred             ecCCc
Q 010997          224 SIQDH  228 (496)
Q Consensus       224 d~~~~  228 (496)
                      |..+.
T Consensus       519 d~~t~  523 (695)
T 2zwa_A          519 NVTEE  523 (695)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            88764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=81.60  E-value=14  Score=33.87  Aligned_cols=59  Identities=10%  Similarity=0.130  Sum_probs=34.2

Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCC--C-----CeEEEEec---C-CCCcEEEEEcCCCcEEEEe
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHD--A-----DLHCVDWN---P-LDDNLILTGSADNSVRMFD  352 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~-----~v~~i~~s---p-~~~~~l~sgs~dg~i~iwd  352 (496)
                      ..+++|+.+|.+...|+++++  .+..+....  .     ...|....   . ..+..++.|..+..+.+.+
T Consensus       112 g~Vy~Gs~~g~l~ald~~tG~--~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          112 EKVYTGSMRTIMYTINMLNGE--IISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS  181 (339)
T ss_dssp             EEEEECEEEEEEEEEETTTCC--EEEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred             CEEEEEecCCEEEEEECCCCc--EEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence            578999999999999999998  444442211  0     01111111   0 1245677777777777766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	496
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.002
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 3e-17
 Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 9/147 (6%)

Query: 255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP 314
             D + K  D      R  + GHE  +  + F P+    F +  DD+   L+D R     
Sbjct: 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQEL 261

Query: 315 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374
           +          +  V ++     L+L G  D +  ++D                 GH   
Sbjct: 262 MTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNR 314

Query: 375 VLCVQWSPDKSSVFGSSAEDGLLNIWD 401
           V C+  + D  +V  + + D  L IW+
Sbjct: 315 VSCLGVTDDGMAVA-TGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 39/294 (13%), Positives = 84/294 (28%), Gaps = 36/294 (12%)

Query: 180 LGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD----HITSSATD 235
           +G    R    L GH     +A+        ++S  +D  +++W        H     + 
Sbjct: 40  VGRIQMRTRRTLRGHLA-KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS 98

Query: 236 PATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC 295
                +   SG+ +         +           R        T            +  
Sbjct: 99  WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158

Query: 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355
           +   D+   LWD   G           D     +  +     L ++G+ D S +++D R 
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD---TRLFVSGACDASAKLWDVRE 215

Query: 356 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 415
                 G     F GH + +  + + P+  + F + ++D    ++D              
Sbjct: 216 ------GMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDL------------- 255

Query: 416 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469
                 + + H      +    ++ S    +++  DD           +W    
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRL-LLAGYDD-------FNCNVWDALK 301

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 14/112 (12%)

Query: 113 VAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEA 172
             + +   +  +      +  +        +  +        ++A + D  +  +WD   
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF-NCNVWDAL- 300

Query: 173 QPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS 224
                       +    +L GH +     L +      V +G  D  + +W+
Sbjct: 301 -----------KADRAGVLAGHDNRV-SCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 20/169 (11%), Positives = 39/169 (23%), Gaps = 53/169 (31%)

Query: 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 198
           H  ++N I   P          D+   L      Q                    +    
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT------------YSHDNIICG 272

Query: 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDG 258
             +++   +   +L+G  D +  +W                                   
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVW----------------------------------- 297

Query: 259 NDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWD 307
                D       G+  GH++ V  +           +   DS L +W+
Sbjct: 298 -----DALKADRAGVLAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.1 bits (175), Expect = 1e-14
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 35/221 (15%)

Query: 204 MCPTEPYVLSGGKDKSVVLWSIQDH----ITSSATDPATAKSAGSSGSIIKQSPKPGDGN 259
           + P   +++S  +DK++ +W +Q        +   +          G++I       D  
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS--NDQT 166

Query: 260 DKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE-------------------FCSVGDD 300
            +     +   +     H   VE +++ P S+                       S   D
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD 226

Query: 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360
             + +WD   G    +     HD  +  V ++      IL+ + D ++R++D +N     
Sbjct: 227 KTIKMWDVSTGM--CLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKN----- 278

Query: 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
               +     H   V  + +      V  + + D  + +W+
Sbjct: 279 -KRCMKTLNAHEHFVTSLDFHKTAPYVV-TGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 48/326 (14%), Positives = 92/326 (28%), Gaps = 59/326 (18%)

Query: 191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH-ITSSATDPATAKSAGSSGSII 249
           L+GH+      +   P    ++S  +D ++ +W  +      +      +    S     
Sbjct: 13  LSGHRSPV-TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 250 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 309
           K                            D          +     S   D  + +W+ +
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 310 VGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE 369
             T   +K    H   +  V  N  D  LI + S D +VR++               +  
Sbjct: 132 --TGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKE------CKAELR 182

Query: 370 GHSAAVLCVQWSPDKS-------------------SVFGSSAEDGLLNIWDYEKVGKKVE 410
            H   V C+ W+P+ S                       S + D  + +WD    G  + 
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCL- 240

Query: 411 QGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL 470
                            GH + V    +++   + ++S +DD        TL++W   + 
Sbjct: 241 -------------MTLVGHDNWVRGVLFHSGGKF-ILSCADD-------KTLRVWDYKN- 278

Query: 471 IYRPQDEVLAELEKFKAHVISCTSKP 496
                   +  L   +  V S     
Sbjct: 279 -----KRCMKTLNAHEHFVTSLDFHK 299

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 35/245 (14%), Positives = 72/245 (29%), Gaps = 54/245 (22%)

Query: 266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDAD 325
           P    +   +GH   V  V F P       S  +D+ + +WD   G     +  K H   
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGD--FERTLKGHTDS 61

Query: 326 LHCVDWNPL-----------------------------------------DDNLILTGSA 344
           +  + ++                                           + + I++ S 
Sbjct: 62  VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 121

Query: 345 DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404
           D +++M++ +       G  +  F GH   V  V+ + D  ++  S + D  + +W    
Sbjct: 122 DKTIKMWEVQT------GYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVAT 174

Query: 405 VGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQI 464
              K E            +   + +           S+            S     T+++
Sbjct: 175 KECKAELREHRHVVECISWAPESSY---SSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231

Query: 465 WRMSD 469
           W +S 
Sbjct: 232 WDVST 236

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.5 bits (176), Expect = 2e-14
 Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 23/151 (15%)

Query: 270 PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV----------IKVE 319
                 GH+D+V  V F     Q   S   D  + LW+ +   +                
Sbjct: 246 ENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 320 KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQ 379
             H   +  V     +D  IL+GS D  V  +D+++      G+P+   +GH  +V+ V 
Sbjct: 305 IGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKS------GNPLLMLQGHRNSVISVA 357

Query: 380 WSPDKS-----SVFGSSAEDGLLNIWDYEKV 405
            +   S     +VF + + D    IW Y+K+
Sbjct: 358 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 52/323 (16%), Positives = 98/323 (30%), Gaps = 38/323 (11%)

Query: 188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH-----------ITSSATDP 236
           +L  +    +    +       Y+ +G  +K+  ++ + D                  + 
Sbjct: 54  ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL 112

Query: 237 ATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS 296
            T+ S  S   I      P DG   A        R     +   V  +            
Sbjct: 113 NTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 171

Query: 297 VGDDSCLILWDARV------GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM 350
                 L+              +    +  + +  +  V  +P D   I  GS D +VR+
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231

Query: 351 FDRRNLTSNG-VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKV 409
           +D         + S      GH  +V  V ++ D  SV  S + D  + +W+ +    K 
Sbjct: 232 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVKLWNLQNANNKS 290

Query: 410 EQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD 469
           +     +         + GH+D V+      +D + ++S S D         +  W    
Sbjct: 291 DSKTPNSGTC---EVTYIGHKDFVLSVATTQNDEY-ILSGSKD-------RGVLFWDKKS 339

Query: 470 LIYRPQDEVLAELEKFKAHVISC 492
                    L  L+  +  VIS 
Sbjct: 340 ------GNPLLMLQGHRNSVISV 356

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 10/124 (8%), Positives = 37/124 (29%), Gaps = 7/124 (5%)

Query: 328 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSV 387
            +D +       L    ++   +++        +   ++K   H++ V CV++S D   +
Sbjct: 20  LLDLDSQSVPDALKKQTNDYYILYNPA--LPREIDVELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 388 FGSSAEDGLLNIWD---YEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 444
             ++  +    ++       V +  +      +               +    ++    +
Sbjct: 78  --ATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135

Query: 445 TVVS 448
               
Sbjct: 136 LATG 139

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 35/179 (19%), Positives = 60/179 (33%), Gaps = 25/179 (13%)

Query: 150 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209
           P + K +A  +    V +WD E                +   TGH+D + +++       
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVE-----RLDSENESGTGHKD-SVYSVVFTRDGQ 267

Query: 210 YVLSGGKDKSVVLWSIQD-------HITSSATDPATAKSAGSSGSIIKQSPKP------- 255
            V+SG  D+SV LW++Q+          +S T   T          +  +          
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327

Query: 256 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA-----QEFCSVGDDSCLILWDAR 309
            D      D  S  P  +  GH ++V  V     S+       F +   D    +W  +
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 315 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA 374
           ++++E+A    +  +   P   +L+L  S D S+ ++             + +   +   
Sbjct: 3   IVQIEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYK---FDIQAKNVDLLQSLRYKHP 58

Query: 375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403
           +LC  +  +           G +   D  
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 1e-07
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGT-SPVIKVEKAHDADLHCVDW 331
           I    +D + D+   PS          D  L ++   +   +  +     +   L C ++
Sbjct: 6   IEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 332 NPLDDNLILTGSADNSVRMFDRRN 355
               D  I  G+    +   D   
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIG 88

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 8/89 (8%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 365 INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFF 424
           +   +     +  ++  P   S+   ++ DG L ++ ++   K V+              
Sbjct: 4   VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVD------------LL 50

Query: 425 QHAGHRDKVVDFHWNASDPWTVVSVSDDC 453
           Q   ++  ++  ++  +    +   +   
Sbjct: 51  QSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 34/188 (18%)

Query: 299 DDSCLILWDARVGTSPVIKVEKAHDADLH-CVDWNPLDDNLILTGSADNSVRMFDRRNLT 357
           ++S +  +   +       +E++        V   P +       S D  V +    +  
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 358 SNGVGSPINKF---------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK 408
            +   S    F            +  V  +++SP    ++ +   DG+++ W+ +   KK
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQT-RKK 285

Query: 409 VEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD-------CDSTGGGGT 461
           ++   +              + D VV    +  D    ++ SDD        D T     
Sbjct: 286 IKNFAK-------------FNEDSVVKIACS--DNILCLATSDDTFKTNAAIDQTIELNA 330

Query: 462 LQIWRMSD 469
             I+ + D
Sbjct: 331 SSIYIIFD 338

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 29/285 (10%), Positives = 73/285 (25%), Gaps = 21/285 (7%)

Query: 190 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQD---------HITSSATDPATAK 240
           I    +D     + + P++  +L    D S+ ++              +           
Sbjct: 6   IEQAPKD-YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64

Query: 241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD 300
              +   I   + +           PS         +        +           G  
Sbjct: 65  IDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLI 124

Query: 301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG 360
             +   +   G   V  +   +    + +     + + ++ G  ++ V+ F    L    
Sbjct: 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR---LPLCE 181

Query: 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPA 420
             +   +  G    +  V   P +   +  S+ DG + +  ++  G       R      
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241

Query: 421 GLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIW 465
            L  +       V    ++      + +   D       G +  W
Sbjct: 242 RLNLKDTNLAYPVNSIEFS-PRHKFLYTAGSD-------GIISCW 278

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.5 bits (129), Expect = 1e-08
 Identities = 40/328 (12%), Positives = 87/328 (26%), Gaps = 24/328 (7%)

Query: 144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALA 203
             I  +        + +    + +WD +   N +    + +         H D  +    
Sbjct: 15  ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIER 74

Query: 204 MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKA- 262
                  V +      ++ + I         +  T K       ++    K         
Sbjct: 75  DAFELCLVATTSFSGDLLFYRIT-------REDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 263 -ADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA 321
            A    +    +          +      A E  S+  +    L          ++    
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE-----LQGTVESPMT 182

Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
                  VD +     LI TG  + +V++ +   L         +    +S ++  V++S
Sbjct: 183 PSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240

Query: 382 PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNAS 441
           P  S +  +   +    I  YE    +         + +        H   V+   +N S
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300

Query: 442 DPWTVVSVSDDCDSTGGGGTLQIWRMSD 469
                 +  D        G L+ W +  
Sbjct: 301 GETLCSAGWD--------GKLRFWDVKT 320

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 16/145 (11%), Positives = 43/145 (29%), Gaps = 10/145 (6%)

Query: 314 PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS- 372
                 KAHDAD+  V       +  ++ S D  ++++D + L +            H  
Sbjct: 5   ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 373 -----AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427
                  +  ++    +  +  +++  G L  +   +  +  +      +       +H 
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH- 120

Query: 428 GHRDKVVDFHWNASDPWTVVSVSDD 452
                      +      +V+    
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVK 145

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 16/289 (5%), Positives = 53/289 (18%), Gaps = 57/289 (19%)

Query: 190 ILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSII 249
               H  +     ++     + +S   D  + +W           D     +        
Sbjct: 9   AGKAHDADI---FSVSACNSFTVSCSGDGYLKVW-----------DNKLLDNENPKDKSY 54

Query: 250 KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDAR 309
                    +                 H D ++ +           +      L+ +   
Sbjct: 55  SHFVHKSGLH-----------------HVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97

Query: 310 VGTSPV--------IKVEKAHDADLHCVDWNPLDD----NLILTGSADNSVRMFDRRNLT 357
                         +            + W   +D    + ++      +  ++      
Sbjct: 98  REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 157

Query: 358 SNG------------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 405
                          +   +      S     V  S       G +  +G + I +   +
Sbjct: 158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFN--NGTVQISELSTL 215

Query: 406 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD 454
                   + +        +      +                   + +
Sbjct: 216 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 39/337 (11%), Positives = 82/337 (24%), Gaps = 53/337 (15%)

Query: 125 EARSPFVKKHKTIIHPGEVNRIRELP------QNTKIVATHTDSPDVLIWDVEAQPNRHA 178
           +  +P  K +   +H   ++ +  L           +VAT + S D+L + +  +     
Sbjct: 45  DNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 104

Query: 179 VLGATNSRPDLILTGHQDNAEFALAMCPTEP--YVLSGGKDKSVVLWSIQDHITSSATDP 236
           V+       D  +  H   A    A         +++     +  +W        S +  
Sbjct: 105 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164

Query: 237 ATAKSAGSSGSIIKQSPKPGD--------GNDKAADGPSVGPRGIYNGHEDTVEDVTFCP 288
                       ++    P               A G + G   I               
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQ 224

Query: 289 SSAQEFC----------------SVGDDSC--------------LILWDARVGTSPVIKV 318
            S                        D +               +        +S     
Sbjct: 225 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 284

Query: 319 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378
           E AH + +  + +N      + +   D  +R +D +          I     H   +   
Sbjct: 285 EFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKT------KERITTLNMHCDDIEIE 337

Query: 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 415
           +          S AE G+ ++   +K  +        
Sbjct: 338 EDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
           H++ +  + +        ++   DN +  +          G+ I +    S++VL    S
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPY------GASIFQS-KESSSVLSCDIS 315

Query: 382 PDKSSVFGSSAEDGLLNIWD 401
            D   +  + + D    +++
Sbjct: 316 VDDKYIV-TGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 44/342 (12%), Positives = 96/342 (28%), Gaps = 46/342 (13%)

Query: 131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLI 190
            ++  T+ H   V  +      T+ V T      V +WD+    N+  V         L 
Sbjct: 42  ARQINTLNHGEVVCAVTISN-PTRHVYTGGKG-CVKVWDISHPGNKSPVSQ-------LD 92

Query: 191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIK 250
                DN   +  + P    ++ GG+  ++ +W +         +  ++  A  + +I  
Sbjct: 93  CLNR-DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151

Query: 251 QSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV 310
            S                              D   C   + +   +          +  
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211

Query: 311 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370
                   +    + +  + + P  +          +V M        +       +   
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEW--------LAVGMESSNVEVLHVNKPDKYQLHL 263

Query: 371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHR 430
           H + VL ++++      F S+ +D LLN W                    G     +   
Sbjct: 264 HESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPY----------------GASIFQSKES 306

Query: 431 DKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY 472
             V+    +  D + +V+ S D           ++   ++IY
Sbjct: 307 SSVLSCDISVDDKY-IVTGSGD-------KKATVY---EVIY 337

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 52/327 (15%), Positives = 99/327 (30%), Gaps = 45/327 (13%)

Query: 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 198
                  +  L  + + + +      + IWD                    ILTGH  + 
Sbjct: 11  RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTGS- 57

Query: 199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDG 258
              L +   E  +++G  D +V +W +      +              +         D 
Sbjct: 58  --VLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR 115

Query: 259 NDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV 318
           +    D  S     +          V       +   S   D  + +W+         + 
Sbjct: 116 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC-----EF 170

Query: 319 EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCV 378
            +  +     +      D L+++GS+DN++R++D         G+ +   EGH   V C+
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC------GACLRVLEGHEELVRCI 224

Query: 379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW 438
           ++   +     S A DG + +WD                           H  +V    +
Sbjct: 225 RFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTL------CLRTLVEHSGRVFRLQF 275

Query: 439 NASDPWTVVSVSDDCDSTGGGGTLQIW 465
              D + +VS S D        T+ IW
Sbjct: 276 ---DEFQIVSSSHD-------DTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 14/149 (9%)

Query: 256 GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV 315
           GD   K  +  +       NGH+  +  + +     +   S   D+ + LWD        
Sbjct: 156 GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC----- 207

Query: 316 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRR---NLTSNGVGSPINKFEGHS 372
               +  +     V     D+  I++G+ D  ++++D     +  +      +     HS
Sbjct: 208 GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 267

Query: 373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
             V  +Q+         SS+ D  + IWD
Sbjct: 268 GRVFRLQFDE---FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 316 IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV 375
           I         ++C+ +   DD  I++G  DN+++++D+                GH+ +V
Sbjct: 8   IHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNT------LECKRILTGHTGSV 58

Query: 376 LCVQWSPDK 384
           LC+Q+    
Sbjct: 59  LCLQYDERV 67

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 13/156 (8%)

Query: 204 MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAA 263
           +   + Y++S   D+++ +W+          +      A              D   +  
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW 203

Query: 264 DGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP-------VI 316
           D        +  GHE+ V  + F     +   S   D  + +WD      P        +
Sbjct: 204 DIECGACLRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL 260

Query: 317 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352
           +    H   +  + +   D+  I++ S D+++ ++D
Sbjct: 261 RTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331
             ++   + +    +      +     ++  + +++        +   K H+  +  VDW
Sbjct: 1   AYHSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 59

Query: 332 NPLDDNLILTGSADNSVRMFDRRN 355
            P D N I+T   D +  ++  + 
Sbjct: 60  AP-DSNRIVTCGTDRNAYVWTLKG 82

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 13/129 (10%)

Query: 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345
               +     + G D   +L+        +    +                      +A 
Sbjct: 249 VTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS----------SQRGLTAR 298

Query: 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPD---KSSVFGSSAEDGLLNIWDY 402
              +  D++  +     +       H  +V  +        K S F ++  DG ++IWD 
Sbjct: 299 ERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

Query: 403 EKVGKKVEQ 411
             +   ++ 
Sbjct: 359 RSLESALKD 367

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 4/120 (3%)

Query: 194 HQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSP 253
             +          TE  +++ G D   VL++        +          SS   +    
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 299

Query: 254 KPGDGNDKA-ADGPSVGPRGIYNGHEDTVEDVTFCP---SSAQEFCSVGDDSCLILWDAR 309
           +  + + KA ++G +    G+ + H+++V  ++      +   +FC+ G D  + +WD R
Sbjct: 300 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 2e-07
 Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 8/130 (6%)

Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 333
           ++     V DV F P S +   +VG D  +  +D + G       +            + 
Sbjct: 201 HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW 260

Query: 334 LDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS--PDKSSVFGSS 391
           LD     T  AD ++R++D            + K+      +   Q       +    S 
Sbjct: 261 LDSQKFATVGADATIRVWDVTT------SKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 314

Query: 392 AEDGLLNIWD 401
           + DG LN ++
Sbjct: 315 SLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 13/121 (10%)

Query: 328 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH-SAAVLCVQWSPDKSS 386
            + ++P  + +         VR  D      +    P+ +F GH S+ V  V++SP K S
Sbjct: 22  HLSYDPTTNAIAYPCGKSAFVRCLD----DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 387 VF-GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT 445
            +  S  E G + +W              + +    +  +       + D  W+      
Sbjct: 78  QYLCSGDESGKVIVWG-------WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRL 130

Query: 446 V 446
            
Sbjct: 131 C 131

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 49/344 (14%), Positives = 92/344 (26%), Gaps = 49/344 (14%)

Query: 139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNA 198
                  +   P    I      S  V   D           G +   P +  TGH  + 
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLD----------DGDSKVPPVVQFTGHGSSV 65

Query: 199 EFALAMCPTEP--YVLSGGKDKSV------------VLWSIQDHITSSATDPATAKSAGS 244
              +   P +   Y+ SG +   V             +             P +  S   
Sbjct: 66  VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF 125

Query: 245 SGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLI 304
            G  +    +  D         S    G  +GH   +       S      +VGDD  ++
Sbjct: 126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185

Query: 305 LWDARVGTSPVIKVEK-AHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS 363
            +                  + +  V+++P     ++T  +D  +  FD ++        
Sbjct: 186 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 245

Query: 364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF 423
              +             S   S  F +   D  + +WD     K V++            
Sbjct: 246 DDQEPVQGG----IFALSWLDSQKFATVGADATIRVWDVTT-SKCVQK------------ 288

Query: 424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM 467
           +     +         A+    ++S+S D       GTL  + +
Sbjct: 289 WTLDKQQLGNQQVGVVATGNGRIISLSLD-------GTLNFYEL 325

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 4e-07
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
             + + C+ +   +DN ++TG+ D  +R++D  N         + +  GH   V  ++++
Sbjct: 12  MTSVITCLQF---EDNYVITGADDKMIRVYDSIN------KKFLLQLSGHDGGVWALKYA 62

Query: 382 PDKSSVFGSS 391
                V GS+
Sbjct: 63  HGGILVSGST 72

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLCVQW 380
           H  +L  +    + DN++++GS +N   +++ R+      G  +       +  +  V +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS------GKLVHANILKDADQIWSVNF 332

Query: 381 SPDKSSVFGSSAEDGLLNIWDY 402
                           L I D+
Sbjct: 333 KGKTLVAAVEKDGQSFLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNP 333
           ++ H   +  +T    S     S G ++   +++ R G   V          +  V++  
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGK-LVHANILKDADQIWSVNFKG 334

Query: 334 LDDNLILTGSADNSVRM 350
               L+     D    +
Sbjct: 335 --KTLVAAVEKDGQSFL 349

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 7e-07
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWS 381
                   +   ++++L+ TGS D ++ ++  +          I     H   V  + W 
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR-----PMKIIKALNAHKDGVNNLLWE 267

Query: 382 PDKSSVFGSSAEDGLLNIWD 401
               S   SS  D  +  W+
Sbjct: 268 TP--STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 5e-06
 Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 284 VTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS 343
                       +   D+ + ++  +      IK   AH   ++ + W     + +++  
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKI-IKALNAHKDGVNNLLWET--PSTLVSSG 276

Query: 344 ADNSVRMFD 352
           AD  ++ ++
Sbjct: 277 ADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 16/79 (20%)

Query: 311 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG 370
           G   V+K    H+  +  +  NPL     ++GS D  +  +              +  + 
Sbjct: 1   GHDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSS-----------SMHQD 44

Query: 371 HSAAVLCVQWSPDKSSVFG 389
           HS  ++ +  S  +     
Sbjct: 45  HSNLIVSLDNSKAQEYSSI 63

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 360 GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 407
           G    +    GH+  +  +  +P       S + DG +  W    + +
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 8e-07
 Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 10/132 (7%)

Query: 309 RVGTSPVIKVEKAH-DADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK 367
           R G     KV K H D  + C+ +     N I++GS DN+++++          G  +  
Sbjct: 2   RRGELKSPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVT------GKCLRT 52

Query: 368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA 427
             GH+  V   Q   +      +     + N    E +                     +
Sbjct: 53  LVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112

Query: 428 GHRDKVVDFHWN 439
           G RD  +     
Sbjct: 113 GSRDATLRVWDI 124

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 19/156 (12%)

Query: 257 DGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVI 316
           D + +  D  +        GH+     +    +      S   DS + +WD +  T   +
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIK--TGQCL 250

Query: 317 KVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-----EGH 371
           +  +  +     V     + N ++T S D +V+++D +       G  I         G 
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT------GEFIRNLVTLESGGS 304

Query: 372 SAAVLCVQWSPDKSSVFGSSA---EDGLLNIWDYEK 404
              V  ++ S  K      S    E+  L + D++ 
Sbjct: 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 7e-06
 Identities = 38/218 (17%), Positives = 74/218 (33%), Gaps = 19/218 (8%)

Query: 186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSS 245
           +   +L GH D+    L  C     ++SG  D ++ +WS     T          + G  
Sbjct: 7   KSPKVLKGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSAV---TGKCLRTLVGHTGGVW 61

Query: 246 GSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL 305
            S ++ +       D+     +       +        V       +   S   D+ L +
Sbjct: 62  SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 121

Query: 306 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI 365
           WD   G     +        +  V     D   +++G+ D  V+++D    T       +
Sbjct: 122 WDIETG-----QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET------CL 170

Query: 366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE 403
           +  +GH+  V  +Q+         S + D  + +WD E
Sbjct: 171 HTLQGHTNRVYSLQFDG---IHVVSGSLDTSIRVWDVE 205

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 11/164 (6%)

Query: 191 LTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH--ITSSATDPATAKSAGSSGSI 248
           L GH +       +     +V+SG  D S+ +W ++    I +     +         +I
Sbjct: 173 LQGHTNRVYS---LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI 229

Query: 249 IKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDA 308
           +       D   K  D  +        G       VT    +     +  DD  + LWD 
Sbjct: 230 LVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287

Query: 309 RVGT---SPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR 349
           + G    + V          +  +  +     +   GS + +  
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEE 330

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 29/188 (15%), Positives = 50/188 (26%), Gaps = 16/188 (8%)

Query: 294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR 353
             ++ D   + L D       +  V     A +H    +      +     D  V M D 
Sbjct: 35  SVTLRDAGQIALIDGSTYE--IKTVLDTGYA-VHISRLSA-SGRYLFVIGRDGKVNMIDL 90

Query: 354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP 413
                  V   I       +         +       +       I D E +  K  Q  
Sbjct: 91  WMKEPTTVAE-IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 149

Query: 414 RTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYR 473
           R   Y     +        ++  H     P  +V+V +        G + +   +DL   
Sbjct: 150 RGMTYDEQ-EYHPEPRVAAILASH---YRPEFIVNVKET-------GKILLVDYTDLNNL 198

Query: 474 PQDEVLAE 481
              E+ AE
Sbjct: 199 KTTEISAE 206

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.5 bits (86), Expect = 0.003
 Identities = 26/201 (12%), Positives = 44/201 (21%), Gaps = 17/201 (8%)

Query: 281 VEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV---IKVEKAHDADLHCVDWNPLDDN 337
           V       S    F   G D  + + D  +        IK+     +          D  
Sbjct: 64  VHISRLSASGRYLFVI-GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122

Query: 338 LILTGSADNSVRMFDRRNLTSNGVGSPIN-----KFEGHSAAVLCVQWSPDKSSVFGSSA 392
            I          + D   L    + S        +       V  +  S  +     +  
Sbjct: 123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182

Query: 393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGL--------FFQHAGHRDKVVDFHWNASDPW 444
           E G + + DY  +            +            F   A  R+K+V          
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242

Query: 445 TVVSVSDDCDSTGGGGTLQIW 465
            +          G G      
Sbjct: 243 AIEDTGGQTPHPGRGANFVHP 263

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 6e-06
 Identities = 40/319 (12%), Positives = 73/319 (22%), Gaps = 40/319 (12%)

Query: 150 PQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEP 209
           P   KI   +  S  V    V             +     I T H           P+  
Sbjct: 27  PAGDKIQYCNGTS--VYTVPVG------------SLTDTEIYTEHSHQT-TVAKTSPSGY 71

Query: 210 YVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSG---SIIKQSPKPGDGNDKAADGP 266
           Y  SG    +V +W          T               S  K+    G+G ++     
Sbjct: 72  YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131

Query: 267 SVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADL 326
                            +            +   S         G     K         
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191

Query: 327 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 386
                   D +L  +   D ++ +++  + T  GV    +      +  +         +
Sbjct: 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 251

Query: 387 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 446
              S++ D  + IW+              T              D+ +   W       +
Sbjct: 252 KIASASADKTIKIWNVA------------TLKVEKTIPVGTRIEDQQLGIIW---TKQAL 296

Query: 447 VSVSDDCDSTGGGGTLQIW 465
           VS+S +       G +   
Sbjct: 297 VSISAN-------GFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 322 HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS-AAVLCVQW 380
             +          D   I + SAD ++++++                   +      +  
Sbjct: 236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT------LKVEKTIPVGTRIEDQQLGI 289

Query: 381 SPDKSSVFGSSAEDGLLNIWDYE 403
              K ++  S + +G +N  + E
Sbjct: 290 IWTKQALV-SISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 9/118 (7%)

Query: 327 HCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS 386
             +   P   + I   +   SV      +       +    +  HS      + SP    
Sbjct: 21  VVLGNTP-AGDKIQYCN-GTSVYTVPVGS------LTDTEIYTEHSHQTTVAKTSPSGYY 72

Query: 387 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW 444
              S    G + IWD  +    ++      + P       +  +              
Sbjct: 73  CA-SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 129

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 20/151 (13%), Positives = 37/151 (24%), Gaps = 6/151 (3%)

Query: 296 SVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRN 355
           ++ D   + L D       ++KV     A +H    +      +L    D  + M D   
Sbjct: 37  TLRDAGQIALVDGDSKK--IVKVIDTGYA-VHISRMSA-SGRYLLVIGRDARIDMIDLWA 92

Query: 356 LTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRT 415
                V   I       +         +       +       I D E +  K     R 
Sbjct: 93  KEPTKVA-EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151

Query: 416 TNYPAGLFFQHAGHRDKVVDFHWNASDPWTV 446
                   +        ++  H +      V
Sbjct: 152 MTVD-TQTYHPEPRVAAIIASHEHPEFIVNV 181

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 7e-05
 Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 8/131 (6%)

Query: 315 VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSA 373
           + +V   H+  +  +  +  D   + +  A+  +  +D         G     F + H+ 
Sbjct: 4   IDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDIST------GISNRVFPDVHAT 56

Query: 374 AVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKV 433
            +  ++ +        S  +   +       V        + ++ P GL     G     
Sbjct: 57  MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116

Query: 434 VDFHWNASDPW 444
             +   A    
Sbjct: 117 ACYKHIAIYSH 127

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 8/67 (11%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345
                     +   D+ +I+W+    +   I ++ AH            ++  I++   D
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQD 289

Query: 346 NSVRMFD 352
           ++++ ++
Sbjct: 290 SNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 5/116 (4%)

Query: 286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD 345
              ++     +      +I +                            D+  + TGS D
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245

Query: 346 NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 401
           NSV +++    + + +   I K     ++V  V W  + + V      D  +  W+
Sbjct: 246 NSVIVWNMNKPSDHPI---IIKGAHAMSSVNSVIWLNETTIVSAGQ--DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 361 VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 404
           +GS      GH+ A+  +  S D  ++F S+  +G +N WD   
Sbjct: 1   LGSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSWDIST 43

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 0.002
 Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 2/61 (3%)

Query: 273 IYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWN 332
           +  GH   +  ++      +   S   +  +  WD   G          H   +  +   
Sbjct: 7   VRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGI-SNRVFPDVHATMITGIKTT 64

Query: 333 P 333
            
Sbjct: 65  S 65

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 13/164 (7%), Positives = 30/164 (18%), Gaps = 22/164 (13%)

Query: 204 MCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP-------- 255
                  +                   S              GS       P        
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 256 -----GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS--AQEFCSVGDDSCLILWDA 308
                      +      G   +    E ++   +       A  +    +   L+ +D 
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305

Query: 309 RVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFD 352
           +               +L  +  +  D   ++    D  +  F 
Sbjct: 306 KTRK------VTEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFP 342

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 16/133 (12%)

Query: 276 GHEDTVEDVTFCPSSAQ----EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDW 331
               +       P S      E+            +   G   +I   ++          
Sbjct: 225 LIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVH 284

Query: 332 NPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSS 391
                           +  +D +            K       +  ++ S D+ +V    
Sbjct: 285 GE-FAAYYQGAPEKGVLLKYDVKT----------RKVTEVKNNLTDLRLSADRKTVM-VR 332

Query: 392 AEDGLLNIWDYEK 404
            +DG +  +  EK
Sbjct: 333 KDDGKIYTFPLEK 345

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	496
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.69
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.62
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.57
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.44
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.42
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.37
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.35
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.28
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.13
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.02
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.01
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.99
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.95
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.86
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.82
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.81
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.78
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.74
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.74
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.73
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.51
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.45
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.38
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.33
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.3
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.28
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.84
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.7
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.59
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.49
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.14
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.06
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.89
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.43
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.25
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.23
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.08
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.08
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.4
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.89
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.98
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.13
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.03
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.84
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.66
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.5
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	87.37
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	86.99
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	85.1
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.76
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.16
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	82.45
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	80.96

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-38  Score=302.33  Aligned_cols=275  Identities=19%  Similarity=0.332  Sum_probs=227.1

Q ss_pred             cceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          131 VKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       131 ~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      .+.+..+.|...|++++|+| ++++||+|+ ||.|+|||+........       .......+|.+ .|.+++|+|++++
T Consensus        42 ~~~~~~~~H~~~V~~v~fs~-~g~~latg~-dg~V~iWd~~~~~~~~~-------~~~~~~~~h~~-~I~~v~~s~dg~~  111 (337)
T d1gxra_          42 ARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSP-------VSQLDCLNRDN-YIRSCKLLPDGCT  111 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSC-------SEEEECSCTTS-BEEEEEECTTSSE
T ss_pred             ceEEEECCCCCcEEEEEECC-CCCEEEEEE-CCEEEEEEccCCcccce-------eEEeeecCCCC-cEEEEEEcCCCCE
Confidence            35667789999999999999 889999997 79999999987632211       12233456776 7999999999999


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      |++|+.||+|++||+....                                      ......+..|...|.+++|+|++
T Consensus       112 l~s~~~dg~i~iwd~~~~~--------------------------------------~~~~~~~~~~~~~v~~~~~~~~~  153 (337)
T d1gxra_         112 LIVGGEASTLSIWDLAAPT--------------------------------------PRIKAELTSSAPACYALAISPDS  153 (337)
T ss_dssp             EEEEESSSEEEEEECCCC----------------------------------------EEEEEEECSSSCEEEEEECTTS
T ss_pred             EEEeecccccccccccccc--------------------------------------ccccccccccccccccccccccc
Confidence            9999999999999986421                                      12235677899999999999998


Q ss_pred             CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          291 AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       291 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                       .++++++.|+.|++||+++++  .......|...|.+++|++ ++..+++|+.||.|++||+++      +..+..+. 
T Consensus       154 -~~l~s~~~d~~i~~~~~~~~~--~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~------~~~~~~~~-  222 (337)
T d1gxra_         154 -KVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLRE------GRQLQQHD-  222 (337)
T ss_dssp             -SEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT------TEEEEEEE-
T ss_pred             -ccccccccccccccccccccc--ccccccccccccccccccc-ccccccccccccccccccccc------ceeecccc-
Confidence             789999999999999999877  5666778999999999999 899999999999999999998      66666664 


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      |...|.+++|+|++.. |++++.|+.|++||++..                .......|...|++++|+|++.+++    
T Consensus       223 ~~~~i~~l~~~~~~~~-l~~~~~d~~i~i~d~~~~----------------~~~~~~~~~~~i~~v~~s~~g~~l~----  281 (337)
T d1gxra_         223 FTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKP----------------DKYQLHLHESCVLSLKFAYCGKWFV----  281 (337)
T ss_dssp             CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSS----------------CEEEECCCSSCEEEEEECTTSSEEE----
T ss_pred             cccceEEEEEcccccc-cceecccccccccccccc----------------ccccccccccccceEEECCCCCEEE----
Confidence            8899999999999984 679999999999999874                2335678999999999999887655    


Q ss_pred             CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                          +|+.||.|++||+.      .++.+..+ .|.++|.+++|+|
T Consensus       282 ----s~s~Dg~i~iwd~~------~~~~~~~~-~~~~~v~~~~~s~  316 (337)
T d1gxra_         282 ----STGKDNLLNAWRTP------YGASIFQS-KESSSVLSCDISV  316 (337)
T ss_dssp             ----EEETTSEEEEEETT------TCCEEEEE-ECSSCEEEEEECT
T ss_pred             ----EEeCCCeEEEEECC------CCCEEEEc-cCCCCEEEEEEeC
Confidence                44456999999998      44444443 4788999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.2e-38  Score=292.01  Aligned_cols=270  Identities=21%  Similarity=0.377  Sum_probs=239.3

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..+.+|.+.|++|+|+| ++++||||+.||+|+|||+.++            +....+.+|.. .|.+++|+|++.++++
T Consensus        11 ~~L~GH~~~I~~l~~sp-~~~~l~s~s~Dg~i~iWd~~~~------------~~~~~~~~h~~-~V~~~~~~~~~~~~~~   76 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETG------------DFERTLKGHTD-SVQDISFDHSGKLLAS   76 (317)
T ss_dssp             CEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTC------------CCCEEECCCSS-CEEEEEECTTSSEEEE
T ss_pred             EEEcCCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------------CEEEEEeCCCC-cEEEEeeecccccccc
Confidence            45679999999999999 8889999999999999999887            66788999988 7999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      ++.++.+.+|+......                                        ...+..|...+.++.|+|++ ..
T Consensus        77 ~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~-~~  115 (317)
T d1vyhc1          77 CSADMTIKLWDFQGFEC----------------------------------------IRTMHGHDHNVSSVSIMPNG-DH  115 (317)
T ss_dssp             EETTSCCCEEETTSSCE----------------------------------------EECCCCCSSCEEEEEECSSS-SE
T ss_pred             ccccccccccccccccc----------------------------------------ccccccccccceeeeccCCC-ce
Confidence            99999999999864322                                        24456788999999999998 78


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA  373 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  373 (496)
                      +++++.|+.+++||++++.  ....+..|...+.+++|+| ++.+|++++.|+.|++|++++      ...+..+.+|..
T Consensus       116 ~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~------~~~~~~~~~~~~  186 (317)
T d1vyhc1         116 IVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVAT------KECKAELREHRH  186 (317)
T ss_dssp             EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEEECCCSS
T ss_pred             EEeeccCcceeEeecccce--eeeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeecc------ceeeEEEecCCC
Confidence            9999999999999999887  5677788999999999999 899999999999999999998      788889999999


Q ss_pred             CEEEEEEcCCCC-------------------CEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc
Q 010997          374 AVLCVQWSPDKS-------------------SVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV  434 (496)
Q Consensus       374 ~i~~l~~sp~~~-------------------~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  434 (496)
                      .+.+++|+|++.                   .++++++.|+.|++||++..               .++..+.+|...|.
T Consensus       187 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---------------~~~~~~~~~~~~v~  251 (317)
T d1vyhc1         187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---------------MCLMTLVGHDNWVR  251 (317)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---------------EEEEEEECCSSCEE
T ss_pred             CceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---------------cEEEEEeCCCCCEE
Confidence            999999998643                   25679999999999999875               56777889999999


Q ss_pred             eEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          435 DFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       435 ~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +++|+|++.+++        +|+.||.|+|||+.      +++++.++.+|.++|++++|+|
T Consensus       252 ~~~~~~~~~~l~--------s~~~dg~i~iwd~~------~~~~~~~~~~h~~~V~~~~~s~  299 (317)
T d1vyhc1         252 GVLFHSGGKFIL--------SCADDKTLRVWDYK------NKRCMKTLNAHEHFVTSLDFHK  299 (317)
T ss_dssp             EEEECSSSSCEE--------EEETTTEEEEECCT------TSCCCEEEECCSSCEEEEEECS
T ss_pred             EEEECCCCCEEE--------EEECCCeEEEEECC------CCcEEEEEcCCCCCEEEEEEcC
Confidence            999999887765        45556999999998      5778888999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-37  Score=294.03  Aligned_cols=284  Identities=19%  Similarity=0.279  Sum_probs=219.1

Q ss_pred             EEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          134 HKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       134 ~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..+.+|.+.|++++|+| ++.+||||+.||+|+|||+.++            +....+.+|.. .|.+++|+|++++|++
T Consensus        49 ~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~------------~~~~~~~~~~~-~v~~v~~~~~~~~l~~  114 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTT------------NKVHAIPLRSS-WVMTCAYAPSGNYVAC  114 (340)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTT------------EEEEEEECSCS-CEEEEEECTTSSEEEE
T ss_pred             EEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccc------------eeEEEEecccc-cEEeeEeeccceeeee
Confidence            34568999999999999 8899999999999999999888            66778889987 7999999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccC------CCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQS------PKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  287 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  287 (496)
                      |+.|+.+++|+............. ..............      ..........+.............+...+....+.
T Consensus       115 ~~~d~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (340)
T d1tbga_         115 GGLDNICSIYNLKTREGNVRVSRE-LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA  193 (340)
T ss_dssp             EETTCCEEEEESSSSCSCCCEEEE-ECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred             ecccceeeccccccccccccccee-cccccccccccccccccccccccccccccccccccccccccccccceeEeeeccc
Confidence            999999999998764322111000 00000000000000      00011111122222333344555677888999998


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      +.+ .++++++.|+.|++||++++.  ....+.+|...|++++|+| ++.+|++|+.||.|++||++.      ...+..
T Consensus       194 ~~~-~~~~~~~~d~~v~i~d~~~~~--~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~------~~~~~~  263 (340)
T d1tbga_         194 PDT-RLFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRA------DQELMT  263 (340)
T ss_dssp             TTS-SEEEEEETTTEEEEEETTTTE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEEE
T ss_pred             ccc-ceeEEeecCceEEEEECCCCc--EEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecc------cccccc
Confidence            887 789999999999999999887  6677789999999999999 999999999999999999998      455544


Q ss_pred             e--ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997          368 F--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT  445 (496)
Q Consensus       368 ~--~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l  445 (496)
                      +  ..+...|.+++|+|++.+ |++|+.||.|+|||+...               .++..+.+|.+.|++++|+|++.++
T Consensus       264 ~~~~~~~~~i~~~~~s~~~~~-l~~g~~dg~i~iwd~~~~---------------~~~~~~~~H~~~V~~l~~s~d~~~l  327 (340)
T d1tbga_         264 YSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDALKA---------------DRAGVLAGHDNRVSCLGVTDDGMAV  327 (340)
T ss_dssp             ECCTTCCSCEEEEEECSSSCE-EEEEETTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEECTTSSCE
T ss_pred             cccccccCceEEEEECCCCCE-EEEEECCCEEEEEECCCC---------------cEEEEEcCCCCCEEEEEEeCCCCEE
Confidence            4  456778999999999984 679999999999999875               5677889999999999999988876


Q ss_pred             EEEecCCCCCCCCCCeEEEee
Q 010997          446 VVSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       446 ~~s~s~d~~sgg~Dg~i~iw~  466 (496)
                      +        |||.||+|+|||
T Consensus       328 ~--------s~s~Dg~v~iWd  340 (340)
T d1tbga_         328 A--------TGSWDSFLKIWN  340 (340)
T ss_dssp             E--------EEETTSCEEEEC
T ss_pred             E--------EEccCCEEEEeC
Confidence            5        455569999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.2e-37  Score=285.78  Aligned_cols=246  Identities=17%  Similarity=0.288  Sum_probs=201.1

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG  215 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~  215 (496)
                      ..+|.+.|++++|+| ++++||+|+.||+|+|||+....          ......+.+|.. .|.+++|+|++++|++++
T Consensus        54 ~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~~~----------~~~~~~~~~~~~-~v~~v~~s~d~~~l~~~~  121 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTT----------HILKTTIPVFSG-PVKDISWDSESKRIAAVG  121 (311)
T ss_dssp             ECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTT----------CCEEEEEECSSS-CEEEEEECTTSCEEEEEE
T ss_pred             EcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeeccc----------cccccccccccC-cccccccccccccccccc
Confidence            468999999999999 89999999999999999998872          122356788987 699999999999999887


Q ss_pred             C--CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          216 K--DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       216 ~--Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      .  ++.+++|+++++..                                        ...+.+|...|++++|+|+++..
T Consensus       122 ~~~~~~~~v~~~~~~~~----------------------------------------~~~l~~h~~~v~~v~~~~~~~~~  161 (311)
T d1nr0a1         122 EGRERFGHVFLFDTGTS----------------------------------------NGNLTGQARAMNSVDFKPSRPFR  161 (311)
T ss_dssp             CCSSCSEEEEETTTCCB----------------------------------------CBCCCCCSSCEEEEEECSSSSCE
T ss_pred             ccccccccccccccccc----------------------------------------cccccccccccccccccccceee
Confidence            5  56699999875432                                        24567899999999999999667


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-----
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-----  368 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-----  368 (496)
                      |++|+.|+.|++||+++.+  .......|...|++++|+| ++++|++|+.||.|++||++.      +..+..+     
T Consensus       162 l~sgs~d~~i~i~d~~~~~--~~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~------~~~~~~~~~~~~  232 (311)
T d1nr0a1         162 IISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVD------GTKTGVFEDDSL  232 (311)
T ss_dssp             EEEEETTSCEEEEETTTBE--EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------CCEEEECBCTTS
T ss_pred             ecccccccccccccccccc--cccccccccccccccccCc-ccccccccccccccccccccc------cccccccccccc
Confidence            9999999999999999877  5667778999999999999 999999999999999999987      4444443     


Q ss_pred             --ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCC---CcceEEecCCCC
Q 010997          369 --EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD---KVVDFHWNASDP  443 (496)
Q Consensus       369 --~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~~p~~~  443 (496)
                        .+|...|++++|+|++.+ |++|+.||.|+|||+++.               .++..+..|..   .+.++.|+  +.
T Consensus       233 ~~~~h~~~V~~~~~s~~~~~-l~tgs~Dg~v~iwd~~t~---------------~~~~~l~~~~~~~~~~~~~~~~--~~  294 (311)
T d1nr0a1         233 KNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATL---------------KVEKTIPVGTRIEDQQLGIIWT--KQ  294 (311)
T ss_dssp             SSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTT---------------EEEEEEECCSSGGGCEEEEEEC--SS
T ss_pred             ccccccccccccccCCCCCE-EEEEeCCCeEEEEECCCC---------------cEEEEEECCCCccceEEEEEec--CC
Confidence              468899999999999985 679999999999999874               44555555543   34455565  44


Q ss_pred             cEEEEecCCCCCCCCCCeEEEeecC
Q 010997          444 WTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       444 ~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .++        +++.||.|++||+.
T Consensus       295 ~l~--------s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         295 ALV--------SISANGFINFVNPE  311 (311)
T ss_dssp             CEE--------EEETTCCEEEEETT
T ss_pred             EEE--------EEECCCEEEEEeCC
Confidence            555        44446999999974

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-36  Score=283.64  Aligned_cols=248  Identities=18%  Similarity=0.345  Sum_probs=207.9

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      ......+|.+.|++++|+| ++++||+|+.||.|++||+....          .+....+.+|.. .+.+++|+|++.+|
T Consensus        89 ~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~-~v~~~~~~~~~~~l  156 (337)
T d1gxra_          89 SQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPT----------PRIKAELTSSAP-ACYALAISPDSKVC  156 (337)
T ss_dssp             EEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC------------EEEEEEECSSS-CEEEEEECTTSSEE
T ss_pred             EEeeecCCCCcEEEEEEcC-CCCEEEEeecccccccccccccc----------cccccccccccc-cccccccccccccc
Confidence            3445568999999999999 88999999999999999987651          234456778877 68999999999999


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ++++.|+.|++|++.+...                                        ......|...|.+++|++++ 
T Consensus       157 ~s~~~d~~i~~~~~~~~~~----------------------------------------~~~~~~~~~~v~~l~~s~~~-  195 (337)
T d1gxra_         157 FSCCSDGNIAVWDLHNQTL----------------------------------------VRQFQGHTDGASCIDISNDG-  195 (337)
T ss_dssp             EEEETTSCEEEEETTTTEE----------------------------------------EEEECCCSSCEEEEEECTTS-
T ss_pred             ccccccccccccccccccc----------------------------------------cccccccccccccccccccc-
Confidence            9999999999999975432                                        25566789999999999998 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      ..+++++.|+.|++||+++++  .+... .|...|.+++|+| ++.+|++|+.||.|++||++.      . .......|
T Consensus       196 ~~~~~~~~d~~v~i~d~~~~~--~~~~~-~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~------~-~~~~~~~~  264 (337)
T d1gxra_         196 TKLWTGGLDNTVRSWDLREGR--QLQQH-DFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNK------P-DKYQLHLH  264 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTS------S-CEEEECCC
T ss_pred             cccccccccccccccccccce--eeccc-ccccceEEEEEcc-cccccceeccccccccccccc------c-cccccccc
Confidence            789999999999999999877  34443 6889999999999 899999999999999999997      3 34566789


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecC
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSD  451 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~  451 (496)
                      ...|++++|+|++++ |++++.||.|++||+...               ..+.. .+|...|.+++|+|++.+++     
T Consensus       265 ~~~i~~v~~s~~g~~-l~s~s~Dg~i~iwd~~~~---------------~~~~~-~~~~~~v~~~~~s~d~~~l~-----  322 (337)
T d1gxra_         265 ESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPYG---------------ASIFQ-SKESSSVLSCDISVDDKYIV-----  322 (337)
T ss_dssp             SSCEEEEEECTTSSE-EEEEETTSEEEEEETTTC---------------CEEEE-EECSSCEEEEEECTTSCEEE-----
T ss_pred             ccccceEEECCCCCE-EEEEeCCCeEEEEECCCC---------------CEEEE-ccCCCCEEEEEEeCCCCEEE-----
Confidence            999999999999984 679999999999999874               23333 45788999999999887654     


Q ss_pred             CCCCCCCCCeEEEeecC
Q 010997          452 DCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       452 d~~sgg~Dg~i~iw~~~  468 (496)
                         |||.||+|+|||+-
T Consensus       323 ---t~s~D~~I~vWdl~  336 (337)
T d1gxra_         323 ---TGSGDKKATVYEVI  336 (337)
T ss_dssp             ---EEETTSCEEEEEEE
T ss_pred             ---EEeCCCeEEEEEEE
Confidence               44556999999973

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-36  Score=284.49  Aligned_cols=271  Identities=18%  Similarity=0.268  Sum_probs=216.5

Q ss_pred             CCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC
Q 010997          139 HPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK  218 (496)
Q Consensus       139 h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg  218 (496)
                      +.+.+..++++| +++.||.++ ++.|.+||+.+.            .....+.+|.. .|++++|+|+|++|++|+.||
T Consensus        16 ~r~~~~~~a~~~-~g~~l~~~~-~~~v~i~~~~~~------------~~~~~~~~H~~-~v~~~~~sp~g~~latg~~dg   80 (311)
T d1nr0a1          16 ARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSL------------TDTEIYTEHSH-QTTVAKTSPSGYYCASGDVHG   80 (311)
T ss_dssp             CTTCCCCCEECT-TSSEEEEEE-TTEEEEEETTCS------------SCCEEECCCSS-CEEEEEECTTSSEEEEEETTS
T ss_pred             CCCCeEEEEEcC-CCCEEEEEe-CCEEEEEECCCC------------ceeEEEcCCCC-CEEEEEEeCCCCeEeccccCc
Confidence            445677889999 777888775 457999999877            56678899988 799999999999999999999


Q ss_pred             cEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc
Q 010997          219 SVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG  298 (496)
Q Consensus       219 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  298 (496)
                      +|+|||+.+....                                      ....+..|..+|.+++|+|++ .+|++++
T Consensus        81 ~i~iwd~~~~~~~--------------------------------------~~~~~~~~~~~v~~v~~s~d~-~~l~~~~  121 (311)
T d1nr0a1          81 NVRIWDTTQTTHI--------------------------------------LKTTIPVFSGPVKDISWDSES-KRIAAVG  121 (311)
T ss_dssp             EEEEEESSSTTCC--------------------------------------EEEEEECSSSCEEEEEECTTS-CEEEEEE
T ss_pred             eEeeeeeeccccc--------------------------------------cccccccccCccccccccccc-ccccccc
Confidence            9999999754321                                      124577899999999999998 6777776


Q ss_pred             C--CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCE
Q 010997          299 D--DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAV  375 (496)
Q Consensus       299 ~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i  375 (496)
                      .  +..+++|++.+++  ....+.+|...|++++|+| ++. .|++|+.||.|++||+++      +.....+..|...|
T Consensus       122 ~~~~~~~~v~~~~~~~--~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~------~~~~~~~~~~~~~i  192 (311)
T d1nr0a1         122 EGRERFGHVFLFDTGT--SNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPP------FKFKSTFGEHTKFV  192 (311)
T ss_dssp             CCSSCSEEEEETTTCC--BCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTT------BEEEEEECCCSSCE
T ss_pred             cccccccccccccccc--ccccccccccccccccccc-cceeeecccccccccccccccc------cccccccccccccc
Confidence            5  4669999999877  4566778999999999999 555 689999999999999998      78888999999999


Q ss_pred             EEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCC
Q 010997          376 LCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDS  455 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~s  455 (496)
                      ++++|+|++. +|++++.|+.|++||+...........        ......+|...|++++|+|++.+++        +
T Consensus       193 ~~v~~~p~~~-~l~~~~~d~~v~~~d~~~~~~~~~~~~--------~~~~~~~h~~~V~~~~~s~~~~~l~--------t  255 (311)
T d1nr0a1         193 HSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFED--------DSLKNVAHSGSVFGLTWSPDGTKIA--------S  255 (311)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBC--------TTSSSCSSSSCEEEEEECTTSSEEE--------E
T ss_pred             cccccCcccc-ccccccccccccccccccccccccccc--------cccccccccccccccccCCCCCEEE--------E
Confidence            9999999998 567999999999999987432211100        0012357899999999999887655        4


Q ss_pred             CCCCCeEEEeecCCCCcCCchHHHHHHHhcc---ceEEEeccC
Q 010997          456 TGGGGTLQIWRMSDLIYRPQDEVLAELEKFK---AHVISCTSK  495 (496)
Q Consensus       456 gg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~---~~v~~~~~s  495 (496)
                      |+.||+|+|||++      +++++.++..|.   ..+.++.|+
T Consensus       256 gs~Dg~v~iwd~~------t~~~~~~l~~~~~~~~~~~~~~~~  292 (311)
T d1nr0a1         256 ASADKTIKIWNVA------TLKVEKTIPVGTRIEDQQLGIIWT  292 (311)
T ss_dssp             EETTSEEEEEETT------TTEEEEEEECCSSGGGCEEEEEEC
T ss_pred             EeCCCeEEEEECC------CCcEEEEEECCCCccceEEEEEec
Confidence            4556999999998      566777776554   345666654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-37  Score=294.41  Aligned_cols=293  Identities=19%  Similarity=0.325  Sum_probs=220.3

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCC------CCCCceEEecCCCCcceeeeec
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGAT------NSRPDLILTGHQDNAEFALAMC  205 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~l~~h~~~~v~~l~~~  205 (496)
                      .+++.++|.+.|+||+|+| ++++||+|+ |+.|+|||+.++..........      .........+|.. .|++++|+
T Consensus        54 ~l~~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~V~~l~~s  130 (388)
T d1erja_          54 ELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL-YIRSVCFS  130 (388)
T ss_dssp             EEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCC-BEEEEEEC
T ss_pred             eeEeeCCCCCcEEEEEECC-CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCC-CEEEEEEC
Confidence            4556778999999999999 889999987 8899999998874332221110      0111123345555 69999999


Q ss_pred             CCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997          206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  285 (496)
Q Consensus       206 p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  285 (496)
                      |++++|++|+.||.|++||...+..                                        ...+.+|...|.++.
T Consensus       131 ~~~~~l~s~~~dg~v~i~~~~~~~~----------------------------------------~~~~~~h~~~v~~~~  170 (388)
T d1erja_         131 PDGKFLATGAEDRLIRIWDIENRKI----------------------------------------VMILQGHEQDIYSLD  170 (388)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEE----------------------------------------EEEECCCSSCEEEEE
T ss_pred             CCCCcceeccccccccccccccccc----------------------------------------ccccccccccccccc
Confidence            9999999999999999999875432                                        356678999999999


Q ss_pred             EccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc
Q 010997          286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI  365 (496)
Q Consensus       286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  365 (496)
                      |++++ ..+++++.++.|++||+++..  ..... .+.....++.+.+.++.+|++|+.||.|++||.++      +..+
T Consensus       171 ~~~~~-~~~~~~~~~~~i~~~d~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~------~~~~  240 (388)
T d1erja_         171 YFPSG-DKLVSGSGDRTVRIWDLRTGQ--CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET------GFLV  240 (388)
T ss_dssp             ECTTS-SEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT------CCEE
T ss_pred             ccccc-ccccccccceeeeeeeccccc--ccccc-ccccccccccccCCCCCeEEEEcCCCeEEEeeccc------Cccc
Confidence            99998 789999999999999998776  34433 45556667777776889999999999999999997      4444


Q ss_pred             eEe-------ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe
Q 010997          366 NKF-------EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW  438 (496)
Q Consensus       366 ~~~-------~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  438 (496)
                      ..+       .+|...|.+++|+|++. +|++++.||.|++||+...........   ............|...|.+++|
T Consensus       241 ~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~  316 (388)
T d1erja_         241 ERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKT---PNSGTCEVTYIGHKDFVLSVAT  316 (388)
T ss_dssp             EEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC------------------CEEEEEECCSSCEEEEEE
T ss_pred             eeeccccccccCCCCCEEEEEECCCCC-EEEEEECCCcEEEEeccCCcccccccc---ccccceeeecccccceEEEEEE
Confidence            433       46889999999999998 467999999999999987433221110   1122445667789999999999


Q ss_pred             cCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccC
Q 010997          439 NASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSK  495 (496)
Q Consensus       439 ~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~s  495 (496)
                      +|++.+++        +|+.||.|+|||+.      +++++.++++|.+.|.+++++
T Consensus       317 s~~~~~l~--------sg~~dg~i~vwd~~------~~~~~~~l~~H~~~V~~~~~~  359 (388)
T d1erja_         317 TQNDEYIL--------SGSKDRGVLFWDKK------SGNPLLMLQGHRNSVISVAVA  359 (388)
T ss_dssp             CGGGCEEE--------EEETTSEEEEEETT------TCCEEEEEECCSSCEEEEEEC
T ss_pred             CCCCCEEE--------EEeCCCEEEEEECC------CCcEEEEEeCCCCCEEEEEEe
Confidence            99887655        44556999999998      678888999999999998753

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.3e-35  Score=280.22  Aligned_cols=251  Identities=13%  Similarity=0.167  Sum_probs=204.2

Q ss_pred             CCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997          140 PGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  219 (496)
Q Consensus       140 ~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~  219 (496)
                      ..+|+|++|+| ++++||+|+.||.|+|||+.++          .......+.+|.+ +|.+++|+|++++|++|+.|++
T Consensus         7 ~~pIt~~~~s~-dg~~la~~~~~~~i~iw~~~~~----------~~~~~~~l~gH~~-~V~~l~fsp~~~~l~s~s~D~~   74 (371)
T d1k8kc_           7 VEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGN----------KWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRN   74 (371)
T ss_dssp             SSCCCEEEECT-TSSEEEEECSSSEEEEEEEETT----------EEEEEEEEECCSS-CEEEEEEETTTTEEEEEETTSC
T ss_pred             CCCeEEEEECC-CCCEEEEEeCCCEEEEEECCCC----------CEEEEEEecCCCC-CEEEEEECCCCCEEEEEECCCe
Confidence            36799999999 8899999999999999999765          1234567899988 7999999999999999999999


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      |+|||+.+...                                      .....+.+|...|.+++|+|++ ..|++|+.
T Consensus        75 i~vWd~~~~~~--------------------------------------~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~  115 (371)
T d1k8kc_          75 AYVWTLKGRTW--------------------------------------KPTLVILRINRAARCVRWAPNE-KKFAVGSG  115 (371)
T ss_dssp             EEEEEEETTEE--------------------------------------EEEEECCCCSSCEEEEEECTTS-SEEEEEET
T ss_pred             EEEEeeccccc--------------------------------------cccccccccccccccccccccc-ccceeecc
Confidence            99999975321                                      1224456788999999999998 78999999


Q ss_pred             CCeEEEEEccCCCcc--ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC------------CCCCCc
Q 010997          300 DSCLILWDARVGTSP--VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN------------GVGSPI  365 (496)
Q Consensus       300 dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~------------~~~~~~  365 (496)
                      |+.|++|++......  .......|...|.+++|+| ++.+|++|+.||.|++||+......            ..+..+
T Consensus       116 d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (371)
T d1k8kc_         116 SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM  194 (371)
T ss_dssp             TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE
T ss_pred             cCcceeeeeecccccccccccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeee
Confidence            999999999876532  2233457889999999999 9999999999999999998753211            112345


Q ss_pred             eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcE
Q 010997          366 NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWT  445 (496)
Q Consensus       366 ~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l  445 (496)
                      .....|...|.+++|+|++.. |++++.|+.|++||+...               ..+..+.+|..+|.+++|+|++. +
T Consensus       195 ~~~~~~~~~v~~~~~s~~g~~-l~s~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~v~s~~fs~d~~-~  257 (371)
T d1k8kc_         195 FESSSSCGWVHGVCFSANGSR-VAWVSHDSTVCLADADKK---------------MAVATLASETLPLLAVTFITESS-L  257 (371)
T ss_dssp             EECCCCSSCEEEEEECSSSSE-EEEEETTTEEEEEEGGGT---------------TEEEEEECSSCCEEEEEEEETTE-E
T ss_pred             eeccCccCcEEEEEeeccccc-ccccccCCcceEEeeecc---------------cceeeeecccccceeeeecCCCC-E
Confidence            667789999999999999984 679999999999999874               45667788999999999999775 5


Q ss_pred             EEEecCCCCCCCCCCeEEEeec
Q 010997          446 VVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       446 ~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      +++++        |+.+++|..
T Consensus       258 la~g~--------d~~~~~~~~  271 (371)
T d1k8kc_         258 VAAGH--------DCFPVLFTY  271 (371)
T ss_dssp             EEEET--------TSSCEEEEE
T ss_pred             EEEEc--------CCceEEEEe
Confidence            55443        366666654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-34  Score=267.96  Aligned_cols=297  Identities=20%  Similarity=0.369  Sum_probs=238.8

Q ss_pred             ccccCChhHhHhhhhCcCCCCcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcc
Q 010997           46 HWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEE  125 (496)
Q Consensus        46 ~w~~~~~~ly~~~~~~~~~wps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~  125 (496)
                      .|..--|.-|. |..|.-  |..++.|.|.         .++++    +++.+..++||++.-.                
T Consensus         2 ~w~p~~~~~~~-L~GH~~--~I~~l~~sp~---------~~~l~----s~s~Dg~i~iWd~~~~----------------   49 (317)
T d1vyhc1           2 EWIPRPPEKYA-LSGHRS--PVTRVIFHPV---------FSVMV----SASEDATIKVWDYETG----------------   49 (317)
T ss_dssp             CCCCCSSCSCE-EECCSS--CEEEEEECSS---------SSEEE----EEESSSCEEEEETTTC----------------
T ss_pred             ccCCCCCccEE-EcCCCC--CeEEEEEcCC---------CCEEE----EEeCCCeEEEEECCCC----------------
Confidence            45444443332 233433  6667888774         12222    2346788999975321                


Q ss_pred             cCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeec
Q 010997          126 ARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMC  205 (496)
Q Consensus       126 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~  205 (496)
                           .....+.+|.+.|.+++|+| ++.++++++.++.+.+|+....            .....+.+|.. .+.++.|+
T Consensus        50 -----~~~~~~~~h~~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~  110 (317)
T d1vyhc1          50 -----DFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGF------------ECIRTMHGHDH-NVSSVSIM  110 (317)
T ss_dssp             -----CCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSS------------CEEECCCCCSS-CEEEEEEC
T ss_pred             -----CEEEEEeCCCCcEEEEeeec-cccccccccccccccccccccc------------ccccccccccc-cceeeecc
Confidence                 01224457999999999999 8899999999999999998876            44455667776 68899999


Q ss_pred             CCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEE
Q 010997          206 PTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVT  285 (496)
Q Consensus       206 p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  285 (496)
                      |+++++++++.|+.+++||++++.                                        ....+.+|...+.+++
T Consensus       111 ~~~~~~~~~~~d~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~  150 (317)
T d1vyhc1         111 PNGDHIVSASRDKTIKMWEVQTGY----------------------------------------CVKTFTGHREWVRMVR  150 (317)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTCC----------------------------------------EEEEEECCSSCEEEEE
T ss_pred             CCCceEEeeccCcceeEeecccce----------------------------------------eeeEEccCCCcceeee
Confidence            999999999999999999997542                                        2366788999999999


Q ss_pred             EccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC-------------------CCcEEEEEcCCC
Q 010997          286 FCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL-------------------DDNLILTGSADN  346 (496)
Q Consensus       286 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~-------------------~~~~l~sgs~dg  346 (496)
                      |+|++ .+|++++.|+.|++|++++..  ....+..|...+.+++|+|.                   .+.++++|+.||
T Consensus       151 ~~~~~-~~l~~~~~d~~v~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  227 (317)
T d1vyhc1         151 PNQDG-TLIASCSNDQTVRVWVVATKE--CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK  227 (317)
T ss_dssp             ECTTS-SEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred             cccCC-CEEEEEeCCCeEEEEeeccce--eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence            99998 799999999999999999887  56677789999999999873                   245799999999


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  426 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  426 (496)
                      .|++||+++      +.++.++.+|...|.+++|+|++.+ |++|+.||.|+|||+...               +++..+
T Consensus       228 ~i~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~---------------~~~~~~  285 (317)
T d1vyhc1         228 TIKMWDVST------GMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNK---------------RCMKTL  285 (317)
T ss_dssp             EEEEEETTT------TEEEEEEECCSSCEEEEEECSSSSC-EEEEETTTEEEEECCTTS---------------CCCEEE
T ss_pred             EEEEEECCC------CcEEEEEeCCCCCEEEEEECCCCCE-EEEEECCCeEEEEECCCC---------------cEEEEE
Confidence            999999998      7899999999999999999999986 579999999999999874               456677


Q ss_pred             cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997          427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~  466 (496)
                      .+|...|++++|+|++++++        |||.||+|+|||
T Consensus       286 ~~h~~~V~~~~~s~~~~~l~--------s~s~Dg~i~iWd  317 (317)
T d1vyhc1         286 NAHEHFVTSLDFHKTAPYVV--------TGSVDQTVKVWE  317 (317)
T ss_dssp             ECCSSCEEEEEECSSSSCEE--------EEETTSEEEEEC
T ss_pred             cCCCCCEEEEEEcCCCCEEE--------EEeCCCeEEEeC
Confidence            89999999999999888765        555569999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-34  Score=269.66  Aligned_cols=285  Identities=14%  Similarity=0.176  Sum_probs=197.6

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEE-ecCCCCcceeeeecCCCCceEE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLIL-TGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l-~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ...||.+.|++++|+| ++++||||+.||+|++||+.++            +....+ .+|.. .|++++|+|++. +++
T Consensus         7 ~~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~------------~~~~~~~~~h~~-~v~~v~~~~~g~-~~~   71 (299)
T d1nr0a2           7 VRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTG------------ISNRVFPDVHAT-MITGIKTTSKGD-LFT   71 (299)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTC------------CEEECSSCSCSS-CEEEEEECTTSC-EEE
T ss_pred             EcCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCC------------cEEEEEcCCCCC-cEEEEEeeccce-eec
Confidence            4568999999999999 8899999999999999999887            334444 35665 799999999986 556


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCC------CCCCCCCCCCCCcCCeeeeecCCCceeEEEEc
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP------GDGNDKAADGPSVGPRGIYNGHEDTVEDVTFC  287 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  287 (496)
                      ++.|+.+++|+..............  ........+......      ....+.+++...  ...  ......+.+++|+
T Consensus        72 ~~~d~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~--~~~~~~~~~~~~s  145 (299)
T d1nr0a2          72 VSWDDHLKVVPAGGSGVDSSKAVAN--KLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTE--VPISYNSSCVALS  145 (299)
T ss_dssp             EETTTEEEEECSSSSSSCTTSCCEE--ECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEE--EECSSCEEEEEEC
T ss_pred             ccceeeEEEeccCCccccccccccc--ccccccccccccccccccccccccccccccccc--ccc--ccccccccccccc
Confidence            6779999999987543211110000  000000001111000      011112222111  111  1234567899999


Q ss_pred             cCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          288 PSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       288 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      |++ .+|++|+.||.|++||+++.... ......|...|++++|+| ++.+|++++.||.|++||+.+...   ......
T Consensus       146 ~~~-~~l~~g~~dg~i~~~d~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~---~~~~~~  219 (299)
T d1nr0a2         146 NDK-QFVAVGGQDSKVHVYKLSGASVS-EVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFE---LAHTNS  219 (299)
T ss_dssp             TTS-CEEEEEETTSEEEEEEEETTEEE-EEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTE---ESCCCC
T ss_pred             ccc-ccccccccccccccccccccccc-cccccccccccccccccc-cccccccccccccccccccccccc---cccccc
Confidence            998 78999999999999999877622 223447899999999999 899999999999999999986221   123455


Q ss_pred             eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEE
Q 010997          368 FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVV  447 (496)
Q Consensus       368 ~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~  447 (496)
                      +.+|...|++++|+|++. +|++|+.||.|+|||+.....            .........+...|..+.|.+ +.+ ++
T Consensus       220 ~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~------------~~~~~~~~~~~~~v~~~~~~~-~~~-l~  284 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSD------------HPIIIKGAHAMSSVNSVIWLN-ETT-IV  284 (299)
T ss_dssp             CCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTS------------CCEEETTSSTTSCEEEEEEEE-TTE-EE
T ss_pred             cccccccccccccccccc-ceEEEcCCCEEEEEECCCCCc------------ceEEEecCCCCCcEEEEEECC-CCE-EE
Confidence            678999999999999998 567999999999999987421            122333334455677776654 555 45


Q ss_pred             EecCCCCCCCCCCeEEEeecC
Q 010997          448 SVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       448 s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +++       .||+|+|||+.
T Consensus       285 s~s-------~D~~i~iWdl~  298 (299)
T d1nr0a2         285 SAG-------QDSNIKFWNVP  298 (299)
T ss_dssp             EEE-------TTSCEEEEECC
T ss_pred             EEe-------CCCEEEEEecc
Confidence            444       45999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.4e-34  Score=275.01  Aligned_cols=306  Identities=15%  Similarity=0.218  Sum_probs=223.2

Q ss_pred             CcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeE
Q 010997           66 PSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNR  145 (496)
Q Consensus        66 ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  145 (496)
                      |..++.|.|+        ...|..|     +.+..+.||+....+                   ...+..+.+|.++|++
T Consensus         9 pIt~~~~s~d--------g~~la~~-----~~~~~i~iw~~~~~~-------------------~~~~~~l~gH~~~V~~   56 (371)
T d1k8kc_           9 PISCHAWNKD--------RTQIAIC-----PNNHEVHIYEKSGNK-------------------WVQVHELKEHNGQVTG   56 (371)
T ss_dssp             CCCEEEECTT--------SSEEEEE-----CSSSEEEEEEEETTE-------------------EEEEEEEECCSSCEEE
T ss_pred             CeEEEEECCC--------CCEEEEE-----eCCCEEEEEECCCCC-------------------EEEEEEecCCCCCEEE
Confidence            6778888775        1244333     356789999864211                   1123345689999999


Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEec
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSI  225 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~  225 (496)
                      ++|+| ++++||+|+.|++|+|||+.+..          ..+...+.+|.. .|++++|+|++++|++|+.|++|++|++
T Consensus        57 l~fsp-~~~~l~s~s~D~~i~vWd~~~~~----------~~~~~~~~~~~~-~v~~i~~~p~~~~l~~~s~d~~i~i~~~  124 (371)
T d1k8kc_          57 VDWAP-DSNRIVTCGTDRNAYVWTLKGRT----------WKPTLVILRINR-AARCVRWAPNEKKFAVGSGSRVISICYF  124 (371)
T ss_dssp             EEEET-TTTEEEEEETTSCEEEEEEETTE----------EEEEEECCCCSS-CEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred             EEECC-CCCEEEEEECCCeEEEEeecccc----------cccccccccccc-cccccccccccccceeecccCcceeeee
Confidence            99999 88999999999999999998661          133445667776 6899999999999999999999999998


Q ss_pred             CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997          226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL  305 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  305 (496)
                      +.....                                    .........|...|.+++|+|++ .+|++|+.|++|++
T Consensus       125 ~~~~~~------------------------------------~~~~~~~~~~~~~v~~v~~~p~~-~~l~s~s~D~~v~v  167 (371)
T d1k8kc_         125 EQENDW------------------------------------WVCKHIKKPIRSTVLSLDWHPNS-VLLAAGSCDFKCRI  167 (371)
T ss_dssp             ETTTTE------------------------------------EEEEEECTTCCSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred             eccccc------------------------------------ccccccccccccccccccccccc-cceeccccCcEEEE
Confidence            753211                                    01113345688999999999998 78999999999999


Q ss_pred             EEccCCCc----------------cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          306 WDARVGTS----------------PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       306 wd~~~~~~----------------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                      ||+.....                ........|...|++++|+| ++++|++++.||.|++||+..      +..+..+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~------~~~~~~~~  240 (371)
T d1k8kc_         168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADK------KMAVATLA  240 (371)
T ss_dssp             EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGG------TTEEEEEE
T ss_pred             EeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeeec------ccceeeee
Confidence            99875431                12344567889999999999 899999999999999999998      78899999


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCC----CCC----------------------CCCCeeE
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGP----RTT----------------------NYPAGLF  423 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~----~~~----------------------~~~~~~~  423 (496)
                      .|..+|.+++|+|++. +||+| .|+.+++|.............    ...                      .......
T Consensus       241 ~~~~~v~s~~fs~d~~-~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (371)
T d1k8kc_         241 SETLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA  318 (371)
T ss_dssp             CSSCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------C
T ss_pred             cccccceeeeecCCCC-EEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccc
Confidence            9999999999999997 56555 478777776544221111000    000                      0000001


Q ss_pred             EEecCCCCCcceEEecCCCC---cEEEEecCCCCCCCCCCeEEEeecC
Q 010997          424 FQHAGHRDKVVDFHWNASDP---WTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       424 ~~~~~h~~~V~~~~~~p~~~---~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .....|.+.|+++++.+.+.   ..++|++.       ||.|+||++.
T Consensus       319 ~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~-------Dg~v~iW~~~  359 (371)
T d1k8kc_         319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGM-------DGGMSIWDVR  359 (371)
T ss_dssp             CCSSSSSSCEEEEEEEESTTTSCSEEEEEET-------TSEEEEEEHH
T ss_pred             eecccccCCEEEEEEeCCCCcceEEEEEEcC-------CCeEEEEeCC
Confidence            11234888999999977543   35665554       5999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-34  Score=275.73  Aligned_cols=327  Identities=19%  Similarity=0.317  Sum_probs=226.8

Q ss_pred             hhhhhccccCChhHhHhhhhCcC--CCCcceEeccCCcccCCCcceEEEEEEeecCCCCCCeEEEEEEeccCcchhhhcc
Q 010997           41 DDKYTHWKSLVPVLYDWLANHNL--VWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEH  118 (496)
Q Consensus        41 ~~~~~~w~~~~~~ly~~~~~~~~--~wps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~  118 (496)
                      ++.+..|....|..++..+.+.+  .=+..++.|.|+        ...|..     |+ +..+.||++.-....      
T Consensus        37 ~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~d--------g~~las-----g~-d~~i~iW~~~~~~~~------   96 (388)
T d1erja_          37 NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND--------GEYLAT-----GC-NKTTQVYRVSDGSLV------   96 (388)
T ss_dssp             SSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTT--------SSEEEE-----EC-BSCEEEEETTTCCEE------
T ss_pred             CCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCC--------CCEEEE-----Ee-CCeEEEEEecccceE------
Confidence            44555666555544333222211  125668888775        122322     22 467899986432211      


Q ss_pred             ccccCcc----cCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecC
Q 010997          119 ISQFNEE----ARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGH  194 (496)
Q Consensus       119 ~~~~~~~----~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h  194 (496)
                       ..+...    .............|...|++++|+| ++++|++|+.||.|++||....            +....+.+|
T Consensus        97 -~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~~------------~~~~~~~~h  162 (388)
T d1erja_          97 -ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENR------------KIVMILQGH  162 (388)
T ss_dssp             -EEECC-----------------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTTT------------EEEEEECCC
T ss_pred             -eeecccccccccccccccccccCCCCCEEEEEECC-CCCcceeccccccccccccccc------------ccccccccc
Confidence             001110    0111223345567999999999999 8899999999999999999887            566778889


Q ss_pred             CCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeee
Q 010997          195 QDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIY  274 (496)
Q Consensus       195 ~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (496)
                      .. .|.+++|++++..+++|+.++.|++||..+...                                        ....
T Consensus       163 ~~-~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------------------------------------~~~~  201 (388)
T d1erja_         163 EQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC----------------------------------------SLTL  201 (388)
T ss_dssp             SS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------------------------------------EEEE
T ss_pred             cc-cccccccccccccccccccceeeeeeecccccc----------------------------------------cccc
Confidence            88 699999999999999999999999999875432                                        1222


Q ss_pred             ecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc-----eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEE
Q 010997          275 NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-----IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVR  349 (496)
Q Consensus       275 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~  349 (496)
                      . +.....++.+++..+.+|++++.||.|++||++++....     .....+|...|++++|+| ++.+|++|+.||.|+
T Consensus       202 ~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~  279 (388)
T d1erja_         202 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVK  279 (388)
T ss_dssp             E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTSEEE
T ss_pred             c-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CCCEEEEEECCCcEE
Confidence            3 344455666666555899999999999999999876211     112346889999999999 899999999999999


Q ss_pred             EEeCCCCCCCC------CCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997          350 MFDRRNLTSNG------VGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  423 (496)
Q Consensus       350 iwd~~~~~~~~------~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  423 (496)
                      +||++......      ..........|...|.+++|+|++.+ |++|+.||.|++||+.+.               .++
T Consensus       280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~sg~~dg~i~vwd~~~~---------------~~~  343 (388)
T d1erja_         280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRGVLFWDKKSG---------------NPL  343 (388)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSEEEEEETTTC---------------CEE
T ss_pred             EEeccCCccccccccccccceeeecccccceEEEEEECCCCCE-EEEEeCCCEEEEEECCCC---------------cEE
Confidence            99998743211      12344556678999999999999985 679999999999999875               567


Q ss_pred             EEecCCCCCcceEEe------cCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          424 FQHAGHRDKVVDFHW------NASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       424 ~~~~~h~~~V~~~~~------~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ..+.+|.+.|.++++      +|++. ++||++       .||+|+||+++
T Consensus       344 ~~l~~H~~~V~~~~~~~~~~~spd~~-~l~s~s-------~Dg~I~iW~~~  386 (388)
T d1erja_         344 LMLQGHRNSVISVAVANGSSLGPEYN-VFATGS-------GDCKARIWKYK  386 (388)
T ss_dssp             EEEECCSSCEEEEEECSSCTTCTTCE-EEEEEE-------TTSEEEEEEEE
T ss_pred             EEEeCCCCCEEEEEEecCcccCCCCC-EEEEEe-------CCCEEEEEeee
Confidence            788999999998875      56555 455444       45999999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-34  Score=268.32  Aligned_cols=299  Identities=19%  Similarity=0.258  Sum_probs=216.1

Q ss_pred             eEEEecCCCce-eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          133 KHKTIIHPGEV-NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       133 ~~~~~~h~~~V-~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      ...+.+|.+.| +|++|   ++++||||+.||+|+|||+.++            +++..+.+|.+ .|++++|+|+ .+|
T Consensus         5 ~~tL~GH~~~vitc~~~---~~~~l~tgs~Dg~i~vWd~~~~------------~~~~~l~~H~~-~V~~l~~s~~-~~l   67 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINK------------KFLLQLSGHDG-GVWALKYAHG-GIL   67 (355)
T ss_dssp             EEEEECCSSSCEEEEEE---ETTEEEEEETTTEEEEEETTTT------------EEEEEEECCSS-CEEEEEEETT-TEE
T ss_pred             cEEECCcCCCcEEEEEE---CCCEEEEEeCCCeEEEEECCCC------------cEEEEEECCCC-CEEEEEEcCC-CEE
Confidence            45667999886 66665   5679999999999999999887            67789999998 7999999985 589


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccc------cCCCCCceeccCCCCCCCCCCCCCCCCc-----------------
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAK------SAGSSGSIIKQSPKPGDGNDKAADGPSV-----------------  268 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  268 (496)
                      ++|+.||+|++|++...............      ........+.  ....++.+.+|+....                 
T Consensus        68 ~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d1nexb2          68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV--TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  145 (355)
T ss_dssp             EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEE--EEETTSEEEEEECCC-----------CCCEEES
T ss_pred             EEEecccccccccccccccccccccccccccccccccccccceee--eecCCCcEEEEEccCCceeccccccceecccee
Confidence            99999999999999876432211110000      0000000000  0011122222222211                 


Q ss_pred             ------CCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEE
Q 010997          269 ------GPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTG  342 (496)
Q Consensus       269 ------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg  342 (496)
                            ........|...+...  .+++ .+++++..|+.|++||+++.+  .......+...+.++.|+| ++.+++++
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~--~~~~-~~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~  219 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDH-ERKRCISA  219 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEET-TTTEEEEE
T ss_pred             ccccccceeeeeeecccccccc--cccc-ceeeeecccceeeeeeccccc--ceeeeeccccccccccccc-cceeeecc
Confidence                  1122333455555443  3445 689999999999999999877  5666678889999999999 89999999


Q ss_pred             cCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCee
Q 010997          343 SADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGL  422 (496)
Q Consensus       343 s~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  422 (496)
                      +.|+.|++||+++      +..+..+.+|...|.+++|+++   +|++|+.||.|++||+...               ..
T Consensus       220 ~~d~~i~i~d~~~------~~~~~~~~~h~~~v~~~~~~~~---~l~~~~~dg~i~iwd~~~~---------------~~  275 (355)
T d1nexb2         220 SMDTTIRIWDLEN------GELMYTLQGHTALVGLLRLSDK---FLVSAAADGSIRGWDANDY---------------SR  275 (355)
T ss_dssp             ETTSCEEEEETTT------CCEEEEECCCSSCCCEEEECSS---EEEEECTTSEEEEEETTTC---------------CE
T ss_pred             cccceEEeeeccc------cccccccccccccccccccccc---eeeeeeccccccccccccc---------------ce
Confidence            9999999999998      7889999999999999999764   5789999999999999874               11


Q ss_pred             EEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHH-HHHhccceEEEeccCC
Q 010997          423 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLA-ELEKFKAHVISCTSKP  496 (496)
Q Consensus       423 ~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~-~l~~h~~~v~~~~~sP  496 (496)
                        .+..|...+..+.+.+.+..++++++        ||.|+|||+.      +++++. .+.+|.++|.+++|+|
T Consensus       276 --~~~~~~~~~~~~~~~~~~~~~l~~g~--------d~~i~vwd~~------tg~~~~~~~~~~~~~V~~v~~~~  334 (355)
T d1nexb2         276 --KFSYHHTNLSAITTFYVSDNILVSGS--------ENQFNIYNLR------SGKLVHANILKDADQIWSVNFKG  334 (355)
T ss_dssp             --EEEEECTTCCCCCEEEECSSEEEEEE--------TTEEEEEETT------TCCBCCSCTTTTCSEEEEEEEET
T ss_pred             --ecccccCCceEEEEEcCCCCEEEEEe--------CCEEEEEECC------CCCEEEEEecCCCCCEEEEEEcC
Confidence              23345566666655444566775543        5899999998      566653 5788999999999987

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-32  Score=258.04  Aligned_cols=261  Identities=15%  Similarity=0.215  Sum_probs=197.1

Q ss_pred             eEEEecCC-CceeEEEecCC-CCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          133 KHKTIIHP-GEVNRIRELPQ-NTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       133 ~~~~~~h~-~~V~~l~~~p~-~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      .....+|. ..|++++|+|. ++.+||+|+.||+|+|||+..........    ......+..|.+ +|.+++|++++++
T Consensus        55 ~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~----~~~~~~~~~~~~-~v~~v~~s~~~~~  129 (325)
T d1pgua1          55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE----VNVKSEFQVLAG-PISDISWDFEGRR  129 (325)
T ss_dssp             EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE----EEEEEEEECCSS-CEEEEEECTTSSE
T ss_pred             eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeee----cccccccccccC-cEEEEEECCCCCc
Confidence            44556774 68999999983 67899999999999999997653221110    011223456766 6999999999998


Q ss_pred             eEEec--CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEcc
Q 010997          211 VLSGG--KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCP  288 (496)
Q Consensus       211 l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  288 (496)
                      |++++  .++.+++|+.+++.                                        .+..+.+|...|.+++|+|
T Consensus       130 l~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~h~~~v~~~~~~~  169 (325)
T d1pgua1         130 LCVVGEGRDNFGVFISWDSGN----------------------------------------SLGEVSGHSQRINACHLKQ  169 (325)
T ss_dssp             EEEEECCSSCSEEEEETTTCC----------------------------------------EEEECCSCSSCEEEEEECS
T ss_pred             cceeeccccceEEEEeecccc----------------------------------------cceeeeecccccccccccc
Confidence            88765  47789999987542                                        2366778999999999999


Q ss_pred             CCCceEEEEcCCCeEEEEEccCCCccc-eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE
Q 010997          289 SSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK  367 (496)
Q Consensus       289 ~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  367 (496)
                      +++.++++++.|+.|++||++..+... ......|...|.+++|+|..+.+|++|+.||.|++||+++      +..+..
T Consensus       170 ~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~------~~~~~~  243 (325)
T d1pgua1         170 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS------GEFLKY  243 (325)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT------CCEEEE
T ss_pred             cccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecc------cccccc
Confidence            987778899999999999988765211 1223467888999999995578999999999999999998      788899


Q ss_pred             eccCCCCEEEEEEc---CCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCC--cceEEecCCC
Q 010997          368 FEGHSAAVLCVQWS---PDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDK--VVDFHWNASD  442 (496)
Q Consensus       368 ~~~h~~~i~~l~~s---p~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~~~~~p~~  442 (496)
                      +.+|..++.++.|+   |++. +|++++.|+.|+|||++..               +++..+..|...  +..+++.+.+
T Consensus       244 l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~  307 (325)
T d1pgua1         244 IEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTS---------------KCVQKWTLDKQQLGNQQVGVVATG  307 (325)
T ss_dssp             CCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTT---------------EEEEEEECCTTCGGGCEEEEEEEE
T ss_pred             ccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCC---------------CEEEEEEecCCcccCeEEEEEECC
Confidence            99888877666665   6777 4679999999999999874               445445555443  4445555444


Q ss_pred             CcEEEEecCCCCCCCCCCeEEEeec
Q 010997          443 PWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       443 ~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      ...++|++.|       |+|+|||+
T Consensus       308 ~~~l~s~s~d-------g~i~vwdl  325 (325)
T d1pgua1         308 NGRIISLSLD-------GTLNFYEL  325 (325)
T ss_dssp             TTEEEEEETT-------SCEEEEET
T ss_pred             CCEEEEEECC-------CEEEEEEC
Confidence            4456655554       99999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-32  Score=258.13  Aligned_cols=234  Identities=16%  Similarity=0.280  Sum_probs=194.1

Q ss_pred             CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997          186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  265 (496)
Q Consensus       186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (496)
                      +...+|+||.+ .|++|+|+|++++|+||+.||+|+|||+.++.                                    
T Consensus        46 ~~~~tL~GH~~-~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~------------------------------------   88 (340)
T d1tbga_          46 RTRRTLRGHLA-KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN------------------------------------   88 (340)
T ss_dssp             CEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEEEEEETTTTE------------------------------------
T ss_pred             eeeEEECCCCC-CEEEEEECCCCCEEEEEECCCceeeeecccce------------------------------------
Confidence            55678999998 79999999999999999999999999997543                                    


Q ss_pred             CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc------------------------------
Q 010997          266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV------------------------------  315 (496)
Q Consensus       266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------------------------------  315 (496)
                          .+..+..|...|.+++|+|++ .++++|+.|+.+++|+........                              
T Consensus        89 ----~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (340)
T d1tbga_          89 ----KVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD  163 (340)
T ss_dssp             ----EEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETT
T ss_pred             ----eEEEEecccccEEeeEeeccc-eeeeeecccceeecccccccccccccceeccccccccccccccccccccccccc
Confidence                236778899999999999998 799999999999999976543110                              


Q ss_pred             -------------eeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC
Q 010997          316 -------------IKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP  382 (496)
Q Consensus       316 -------------~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp  382 (496)
                                   ......+...+....+.+ ...++++|+.|+.|++||+++      +.++.++.+|...|++++|+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~------~~~~~~~~~h~~~i~~v~~~p  236 (340)
T d1tbga_         164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE------GMCRQTFTGHESDINAICFFP  236 (340)
T ss_dssp             TEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTT------TEEEEEECCCSSCEEEEEECT
T ss_pred             ccccccccccccccccccccceeEeeecccc-ccceeEEeecCceEEEEECCC------CcEEEEEeCCCCCeEEEEECC
Confidence                         011123445677778888 889999999999999999998      788999999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeE
Q 010997          383 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTL  462 (496)
Q Consensus       383 ~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i  462 (496)
                      ++. +|++|+.||.|++||+.....             ...+....|...|.+++|+|++.+++        +|+.||.|
T Consensus       237 ~~~-~l~s~s~d~~i~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~~s~~~~~l~--------~g~~dg~i  294 (340)
T d1tbga_         237 NGN-AFATGSDDATCRLFDLRADQE-------------LMTYSHDNIICGITSVSFSKSGRLLL--------AGYDDFNC  294 (340)
T ss_dssp             TSS-EEEEEETTSCEEEEETTTTEE-------------EEEECCTTCCSCEEEEEECSSSCEEE--------EEETTSCE
T ss_pred             CCC-EEEEEeCCCeEEEEeeccccc-------------ccccccccccCceEEEEECCCCCEEE--------EEECCCEE
Confidence            998 567999999999999987411             22333456777899999999887655        44456999


Q ss_pred             EEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          463 QIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       463 ~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +|||+.      .++.+.++.+|.++|.+++|+|
T Consensus       295 ~iwd~~------~~~~~~~~~~H~~~V~~l~~s~  322 (340)
T d1tbga_         295 NVWDAL------KADRAGVLAGHDNRVSCLGVTD  322 (340)
T ss_dssp             EEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred             EEEECC------CCcEEEEEcCCCCCEEEEEEeC
Confidence            999998      6778888999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-32  Score=256.45  Aligned_cols=298  Identities=17%  Similarity=0.259  Sum_probs=211.1

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .+.+|.+.|.+ ++++ ++++||||+.||+|+|||+.++            +++.++.+|.. .|++++|+|+  +|++|
T Consensus        11 ~l~GH~~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~------------~~~~~~~~h~~-~V~~v~~~~~--~l~s~   73 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTG------------KCLRTLVGHTG-GVWSSQMRDN--IIISG   73 (342)
T ss_dssp             EEECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTC------------CEEEECCCCSS-CEEEEEEETT--EEEEE
T ss_pred             EECCcCCceEE-EEEE-CCCEEEEEeCCCeEEEEECCCC------------CEEEEEeCCCC-CEEEEEeCCC--ccccc
Confidence            45699999864 2455 6789999999999999999888            67788999998 6999999874  89999


Q ss_pred             cCCCcEEEEecCCccccccCCcccccc--CCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCc
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKS--AGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQ  292 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  292 (496)
                      +.|+.+++|+.................  ........  ........+.+++.........+..+.....  .+.+.. .
T Consensus        74 s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~  148 (342)
T d2ovrb2          74 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV--VSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDG-R  148 (342)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEE--EEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECS-S
T ss_pred             eecccccccccccccceecccccceeEeeeecccccc--cccccceeEEEeecccccceeeeecccccce--eecccc-c
Confidence            999999999987653322111100000  00000000  0011122233344444444444444433333  233344 5


Q ss_pred             eEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCC
Q 010997          293 EFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHS  372 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  372 (496)
                      .+++++.|+.|++||.+...  ....+.+|...+.++.+   ++.+|++|+.||.|++||++.      +.++..+.+|.
T Consensus       149 ~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~------~~~~~~~~~~~  217 (342)
T d2ovrb2         149 RVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVET------GNCIHTLTGHQ  217 (342)
T ss_dssp             CEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTT------CCEEEEECCCC
T ss_pred             eeeeecCCCeEEEeecccce--eeEEEcCcccccccccC---CCCEEEEEeCCCeEEEeeccc------ceeeeEecccc
Confidence            78999999999999998876  56667788877777666   568999999999999999998      78899999999


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCC
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDD  452 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d  452 (496)
                      ..|.+++++++   +|++++.|+.|++||+....            ....+..+..|...+.+++++++   +++++++ 
T Consensus       218 ~~v~~~~~~~~---~l~s~s~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~-  278 (342)
T d2ovrb2         218 SLTSGMELKDN---ILVSGNADSTVKIWDIKTGQ------------CLQTLQGPNKHQSAVTCLQFNKN---FVITSSD-  278 (342)
T ss_dssp             SCEEEEEEETT---EEEEEETTSCEEEEETTTCC------------EEEEECSTTSCSSCEEEEEECSS---EEEEEET-
T ss_pred             cceeEEecCCC---EEEEEcCCCEEEEEeccccc------------ccccccccceeeeceeecccCCC---eeEEEcC-
Confidence            99999988764   57899999999999998741            11223334456777888888752   5665554 


Q ss_pred             CCCCCCCCeEEEeecCCCCcCCchHHHHHH-----HhccceEEEeccCC
Q 010997          453 CDSTGGGGTLQIWRMSDLIYRPQDEVLAEL-----EKFKAHVISCTSKP  496 (496)
Q Consensus       453 ~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l-----~~h~~~v~~~~~sP  496 (496)
                            ||+|+|||+.      +++.++++     .+|.+.|++++|+|
T Consensus       279 ------Dg~i~iwd~~------tg~~i~~~~~~~~~~~~~~v~~v~~s~  315 (342)
T d2ovrb2         279 ------DGTVKLWDLK------TGEFIRNLVTLESGGSGGVVWRIRASN  315 (342)
T ss_dssp             ------TSEEEEEETT------TCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred             ------CCEEEEEECC------CCCEEEEEecccCCCCCCCEEEEEECC
Confidence                  5999999998      45555544     46888999999997

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-31  Score=246.68  Aligned_cols=279  Identities=20%  Similarity=0.346  Sum_probs=203.8

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ....|...|+|++|   ++++||||+.||+|+|||+.++            ++..++.+|.+ .|++++|  ++++|++|
T Consensus        10 ~~~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~------------~~~~~l~~H~~-~V~~v~~--~~~~l~s~   71 (293)
T d1p22a2          10 CRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTL------------ECKRILTGHTG-SVLCLQY--DERVIITG   71 (293)
T ss_dssp             CCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSC------------CEEEEECCCSS-CEEEEEC--CSSEEEEE
T ss_pred             ccCCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCC------------cEEEEEecCCC-CEeeeec--ccceeecc
Confidence            34568889999865   6789999999999999999887            77889999998 6889887  57899999


Q ss_pred             cCCCcEEEEecCCccccccCCccccc--cCCCCCceeccCCCCCCCCCCCCCCCCc---CCeeeeecCCCceeEEEEccC
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADGPSV---GPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      +.||.|++|++..+............  ..........  .....+...+++....   .....+..|...|..+.+.+ 
T Consensus        72 s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  148 (293)
T d1p22a2          72 SSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMV--TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-  148 (293)
T ss_dssp             ETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEE--EEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET-
T ss_pred             ccccccccccccccccccccccccccccccccccccee--ecccccceeEeeccccccccccccccccccccccceecc-
Confidence            99999999999876443222111100  0000000000  0112223333333322   23345567888888888764 


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE  369 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~  369 (496)
                        ..+++++.|+.|++||+++.+  ....+.++...+..+.+++   .++++++.||.|++||+++      ...+..+.
T Consensus       149 --~~~~~~s~d~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~------~~~~~~~~  215 (293)
T d1p22a2         149 --KYIVSASGDRTIKVWNTSTCE--FVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC------GACLRVLE  215 (293)
T ss_dssp             --TEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTT------CCEEEEEC
T ss_pred             --cccccccCCCceeeecCCCCc--EEEEEcccccccccccCCC---CeEEEecCCCEEEEEeccc------ceeeeeec
Confidence              468899999999999999887  5667778888998888864   6899999999999999998      78888899


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEe
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSV  449 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~  449 (496)
                      +|...|..+.  +++. .|++|+.||.|++||+.........      .....+..+.+|.+.|++++|++  .+ ++  
T Consensus       216 ~~~~~v~~~~--~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~~~H~~~V~~v~~d~--~~-l~--  281 (293)
T d1p22a2         216 GHEELVRCIR--FDNK-RIVSGAYDGKIKVWDLVAALDPRAP------AGTLCLRTLVEHSGRVFRLQFDE--FQ-IV--  281 (293)
T ss_dssp             CCSSCEEEEE--CCSS-EEEEEETTSCEEEEEHHHHTSTTSC------TTTTEEEEECCCSSCCCCEEECS--SC-EE--
T ss_pred             ccceeeeecc--ccce-EEEEEcCCCEEEEEECCCCcccccc------CCceeeEEecCCCCCEEEEEEcC--CE-EE--
Confidence            9998887654  4555 5779999999999998764322211      22346777899999999999964  44 45  


Q ss_pred             cCCCCCCCCCCeEEEee
Q 010997          450 SDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~  466 (496)
                           |||.||+|+|||
T Consensus       282 -----s~s~Dg~i~iWD  293 (293)
T d1p22a2         282 -----SSSHDDTILIWD  293 (293)
T ss_dssp             -----ECCSSSEEEEEC
T ss_pred             -----EEecCCEEEEeC
Confidence                 555669999997

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.6e-32  Score=254.50  Aligned_cols=265  Identities=15%  Similarity=0.219  Sum_probs=197.6

Q ss_pred             CceeEEEecCCCCcEEEEEeCCC-cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEEecCC
Q 010997          141 GEVNRIRELPQNTKIVATHTDSP-DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGGKD  217 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~sg~~D  217 (496)
                      +.+++++|+| +++.||.++.+. .|+.|+....          .......+.+|....|++++|+|  ++.+|++|+.|
T Consensus        18 ~~~t~l~~~~-~~~~la~~~~~~~~i~~~~~~~~----------~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~D   86 (325)
T d1pgua1          18 NFTTHLSYDP-TTNAIAYPCGKSAFVRCLDDGDS----------KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES   86 (325)
T ss_dssp             TCCCCCEEET-TTTEEEEEETTEEEEEECCSSCC----------SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETT
T ss_pred             CCeEEEEECC-CCCEEEEEeCCCEEEEEEeCCCC----------CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCC
Confidence            3468999999 677888776543 3555654443          22455678898766899999998  46799999999


Q ss_pred             CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEE
Q 010997          218 KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSV  297 (496)
Q Consensus       218 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  297 (496)
                      |+|+|||+..........                                ......+..|.++|.+++|++++ .+++++
T Consensus        87 g~i~iWd~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~  133 (325)
T d1pgua1          87 GKVIVWGWTFDKESNSVE--------------------------------VNVKSEFQVLAGPISDISWDFEG-RRLCVV  133 (325)
T ss_dssp             SEEEEEEEEEEGGGTEEE--------------------------------EEEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred             CCEEEeeecCCcceeeee--------------------------------cccccccccccCcEEEEEECCCC-Ccccee
Confidence            999999997654321111                                01113456788999999999998 556555


Q ss_pred             c--CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceE---eccCC
Q 010997          298 G--DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINK---FEGHS  372 (496)
Q Consensus       298 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~---~~~h~  372 (496)
                      +  .++.+++|+..+++  .+..+.+|...|++++|+|....++++++.|+.|++||+..      .+....   +..|.
T Consensus       134 ~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~------~~~~~~~~~~~~~~  205 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGN--SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP------FKFSASDRTHHKQG  205 (325)
T ss_dssp             ECCSSCSEEEEETTTCC--EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT------BEEEEEECSSSCTT
T ss_pred             eccccceEEEEeecccc--cceeeeecccccccccccccccceEEEeecccccccccccc------cccceecccccCCC
Confidence            4  47789999998877  66777889999999999994445688899999999999886      333333   35678


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEec---CCCCcEEEEe
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN---ASDPWTVVSV  449 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~---p~~~~l~~s~  449 (496)
                      ..|.+++|+|++..+|++++.|+.|++||++..               ..+..+.+|...+..+.|+   |++.++ +++
T Consensus       206 ~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---------------~~~~~l~~~~~~v~~~~~s~~~~dg~~l-~s~  269 (325)
T d1pgua1         206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---------------EFLKYIEDDQEPVQGGIFALSWLDSQKF-ATV  269 (325)
T ss_dssp             CCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---------------CEEEECCBTTBCCCSCEEEEEESSSSEE-EEE
T ss_pred             CccEEeeeccccceeccccccccceeeeeeccc---------------cccccccccccccccceeeeeccCCCEE-EEE
Confidence            889999999987667889999999999999874               4566778888877766665   556654 544


Q ss_pred             cCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhcc
Q 010997          450 SDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFK  486 (496)
Q Consensus       450 s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~  486 (496)
                             +.|+.|+|||+.      .++++..+..|.
T Consensus       270 -------s~D~~i~iwd~~------~~~~~~~~~~~~  293 (325)
T d1pgua1         270 -------GADATIRVWDVT------TSKCVQKWTLDK  293 (325)
T ss_dssp             -------ETTSEEEEEETT------TTEEEEEEECCT
T ss_pred             -------eCCCeEEEEECC------CCCEEEEEEecC
Confidence                   445999999998      556655554443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=8.1e-32  Score=260.45  Aligned_cols=291  Identities=12%  Similarity=0.147  Sum_probs=192.3

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC-----cceeeeecC-CCCc
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN-----AEFALAMCP-TEPY  210 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~-----~v~~l~~~p-~~~~  210 (496)
                      .+|.+.|+++++++   ++|+|++.|++|+|||..+......      .........|...     ....+..+. ++.+
T Consensus        11 ~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (393)
T d1sq9a_          11 KAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   81 (393)
T ss_dssp             SCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCG------GGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             CcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcc------cceeEeeeeccCCceEeeeEeeeccCCCCCcE
Confidence            48999999999854   5899999999999999876532211      1112222333321     111222222 2347


Q ss_pred             eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCC
Q 010997          211 VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSS  290 (496)
Q Consensus       211 l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  290 (496)
                      +++++.||.|++|++..............                              .......+...+..++|.++.
T Consensus        82 ~~s~~~dg~v~~w~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~  131 (393)
T d1sq9a_          82 VATTSFSGDLLFYRITREDETKKVIFEKL------------------------------DLLDSDMKKHSFWALKWGASN  131 (393)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEE------------------------------CCSCTTGGGSCEEEEEEECCC
T ss_pred             EEEEeCCCcEEEEEccCCCceeeeecccc------------------------------ceeeeccCCCceEEEEEecCC
Confidence            88999999999999865422111100000                              000111244567778887654


Q ss_pred             ----CceEEEEcCCCeEEEEEccCCCcc----------------ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEE
Q 010997          291 ----AQEFCSVGDDSCLILWDARVGTSP----------------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  350 (496)
Q Consensus       291 ----~~~l~s~~~dg~i~iwd~~~~~~~----------------~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~i  350 (496)
                          ..++++++.||.+++||+......                .......+...+++++|+| ++ +||+|+.||+|+|
T Consensus       132 ~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~i  209 (393)
T d1sq9a_         132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQI  209 (393)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEE
T ss_pred             CcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEE
Confidence                257899999999999998643210                0111224556789999999 65 8999999999999


Q ss_pred             EeCCCCCCCCCCCCce------EeccCCCCEEEEEEcCCCCCEEEEEeCCCc---EEEEECCCCCcccCCCCCCCCCCCe
Q 010997          351 FDRRNLTSNGVGSPIN------KFEGHSAAVLCVQWSPDKSSVFGSSAEDGL---LNIWDYEKVGKKVEQGPRTTNYPAG  421 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~------~~~~h~~~i~~l~~sp~~~~llas~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~  421 (496)
                      ||+++      +.++.      .+.+|..+|.+|+|+|++. +|++|+.|+.   |++||+............  .....
T Consensus       210 wd~~~------~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~--~~~~~  280 (393)
T d1sq9a_         210 SELST------LRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVP--THSSQ  280 (393)
T ss_dssp             EETTT------TEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred             Eeecc------cccccccccccccccccceEEEcccccccc-eeeeecCCCCcceeeecccccceeeeeeccc--ccccc
Confidence            99997      44444      4457999999999999998 5679988874   999999874322211110  01122


Q ss_pred             eEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEE
Q 010997          422 LFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVIS  491 (496)
Q Consensus       422 ~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~  491 (496)
                      ......||.+.|++++|+|++++| +       |||.|++|+|||+.      +++++.+|.+|.+.|..
T Consensus       281 ~~~~~~gH~~~V~~l~fspd~~~l-~-------S~s~D~~v~vWd~~------~g~~~~~l~gH~~~v~~  336 (393)
T d1sq9a_         281 ASLGEFAHSSWVMSLSFNDSGETL-C-------SAGWDGKLRFWDVK------TKERITTLNMHCDDIEI  336 (393)
T ss_dssp             ---CCBSBSSCEEEEEECSSSSEE-E-------EEETTSEEEEEETT------TTEEEEEEECCGGGCSS
T ss_pred             ceeeeecccCceeeeccCCCCCee-E-------EECCCCEEEEEECC------CCCEEEEECCcCCcccC
Confidence            334456899999999999988755 5       45556999999999      78899999999887753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.1e-30  Score=240.86  Aligned_cols=268  Identities=12%  Similarity=0.172  Sum_probs=188.6

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      .+.+|.++|++++|+|     |+||+.||+|++||+.+.                 ..+|.. .|.+++++++ ..++++
T Consensus         8 ~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----------------~~~h~~-~V~~~~~~~~-~~~~s~   63 (287)
T d1pgua2           8 TISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----------------HQDHSN-LIVSLDNSKA-QEYSSI   63 (287)
T ss_dssp             EECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----------------ECCCCS-CEEEEECCST-TCCEEE
T ss_pred             EECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-----------------CCCCCC-CEEEEEecCC-CeEEEE
Confidence            4568999999999987     899999999999998654                 357877 6899999865 468999


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceE
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l  294 (496)
                      +.|++|++|++........  +.... ..........   .....+..++......+..+..+ ..+  .++++++ ..+
T Consensus        64 s~D~~v~~w~~~~~~~~~~--~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~-~~~  133 (287)
T d1pgua2          64 SWDDTLKVNGITKHEFGSQ--PKVAS-ANNDGFTAVL---TNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQ-NYV  133 (287)
T ss_dssp             ETTTEEEETTEEEEECSSC--EEEEE-ECSSSEEEEE---ETTSEEEEEETTTCCEEEEEECS-SCE--EEEEECS-SEE
T ss_pred             eeccccccccccccccccc--eeeee-eccCCceEEE---eecccceeeeccceeeeeecccc-cee--eeeeccC-cce
Confidence            9999999999875432110  00000 0000011110   01112233344444444444433 233  4566776 445


Q ss_pred             EEEcC-CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCc-eEeccCC
Q 010997          295 CSVGD-DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEGHS  372 (496)
Q Consensus       295 ~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~~~~~h~  372 (496)
                      ++++. ++.|++|++..... .......|...+++++|+| ++.+|++|+.||.|++||+.+      +... ..+.+|.
T Consensus       134 ~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~------~~~~~~~~~~h~  205 (287)
T d1pgua2         134 AVGLEEGNTIQVFKLSDLEV-SFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQS------REVKTSRWAFRT  205 (287)
T ss_dssp             EEEETTTSCEEEEETTEEEE-EEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT------TEEEECCSCCCS
T ss_pred             eeeccccceeeeeeccccce-eeeeeeccCCceeEEEecc-Cccccccccccccccceeecc------cccccccccccc
Confidence            55554 56899999876542 2223345788999999999 999999999999999999987      4433 3467899


Q ss_pred             CCEEEEEEcCCC---------CCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCC
Q 010997          373 AAVLCVQWSPDK---------SSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDP  443 (496)
Q Consensus       373 ~~i~~l~~sp~~---------~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~  443 (496)
                      ..|.+++|+|.+         ..+||+|+.|+.|+|||+....              ..+..+.+|...|++++|+|++ 
T Consensus       206 ~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~--------------~~~~~~~~h~~~V~~v~~~~~~-  270 (287)
T d1pgua2         206 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--------------KIIKALNAHKDGVNNLLWETPS-  270 (287)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--------------CCEEETTSSTTCEEEEEEEETT-
T ss_pred             cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC--------------eEEEEeCCCCCCeEEEEECCCC-
Confidence            999999999864         2367899999999999997631              3556678999999999999965 


Q ss_pred             cEEEEecCCCCCCCCCCeEEEeec
Q 010997          444 WTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       444 ~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      . ++|++       .||+|++|++
T Consensus       271 ~-l~s~g-------~D~~v~iW~i  286 (287)
T d1pgua2         271 T-LVSSG-------ADACIKRWNV  286 (287)
T ss_dssp             E-EEEEE-------TTSCEEEEEE
T ss_pred             E-EEEEE-------CCCeEEEEEE
Confidence            4 45444       4599999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.3e-30  Score=240.14  Aligned_cols=289  Identities=10%  Similarity=0.116  Sum_probs=197.7

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC-CceEEec
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE-PYVLSGG  215 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~-~~l~sg~  215 (496)
                      -+|.+.|++|+|+| ++++||+|+.||+|+|||+......         .......+|.. +|.+++|+|++ .+|++|+
T Consensus         8 ~~h~d~I~~l~fsp-~~~~L~s~s~Dg~v~iwd~~~~~~~---------~~~~~~~~h~~-~V~~v~f~~~~~~~l~sg~   76 (342)
T d1yfqa_           8 QAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKN---------VDLLQSLRYKH-PLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             SCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTE---------EEEEEEEECSS-CEEEEEEEESSSEEEEEEE
T ss_pred             CCCCCCEEEEEEeC-CCCEEEEEECCCeEEEEEccCCCcc---------eEEEEecCCCC-CEEEEEEeCCCCCEEEEcc
Confidence            47999999999999 8899999999999999999876211         11233346877 79999999874 5899999


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC-CceeEEEEccCCCceE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE-DTVEDVTFCPSSAQEF  294 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l  294 (496)
                      .||.|++|++......                                        .....+. .......+.+.. ..+
T Consensus        77 ~d~~v~~w~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~  115 (342)
T d1yfqa_          77 VQGEILKVDLIGSPSF----------------------------------------QALTNNEANLGICRICKYGD-DKL  115 (342)
T ss_dssp             TTSCEEEECSSSSSSE----------------------------------------EECBSCCCCSCEEEEEEETT-TEE
T ss_pred             cccceeeeeccccccc----------------------------------------cccccccccccccccccccc-ccc
Confidence            9999999998754321                                        1122222 223344444555 789


Q ss_pred             EEEcCCCeEEEEEccCCCccceee--ecc--CCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          295 CSVGDDSCLILWDARVGTSPVIKV--EKA--HDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       295 ~s~~~dg~i~iwd~~~~~~~~~~~--~~~--~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      ++++.|+.+++||++.........  ...  .......+.+.+ .+..+++++.||.|++||++....   .........
T Consensus       116 ~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~~~~  191 (342)
T d1yfqa_         116 IAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCED---DNGTIEESG  191 (342)
T ss_dssp             EEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTT---CCCEEEECS
T ss_pred             cccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcc---cceeeeecc
Confidence            999999999999998765322221  111  223345566677 788999999999999999987431   122233345


Q ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEec
Q 010997          371 HSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVS  450 (496)
Q Consensus       371 h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s  450 (496)
                      +...+.+..+.+.....+++++.||.+.+|++.........................+|...|++++|+|++.+|+    
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~la----  267 (342)
T d1yfqa_         192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY----  267 (342)
T ss_dssp             CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE----
T ss_pred             cccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEE----
Confidence            5667777777776666788999999999999876433322111100000011112356777899999999988765    


Q ss_pred             CCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH-hccceEEEeccC
Q 010997          451 DDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE-KFKAHVISCTSK  495 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~-~h~~~v~~~~~s  495 (496)
                          |||.||.|+|||+.      .++.+.++. .|...+.+++++
T Consensus       268 ----sg~~Dg~v~vWD~~------~~~~l~~~~~~~~~~~~~~s~~  303 (342)
T d1yfqa_         268 ----TAGSDGIISCWNLQ------TRKKIKNFAKFNEDSVVKIACS  303 (342)
T ss_dssp             ----EEETTSCEEEEETT------TTEEEEECCCCSSSEEEEEEEC
T ss_pred             ----EECCCCEEEEEECC------CCcEEEEecCCCCCEEEEEEeC
Confidence                55566999999998      555666664 355667776665

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-29  Score=238.70  Aligned_cols=298  Identities=16%  Similarity=0.242  Sum_probs=208.5

Q ss_pred             CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997           95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP  174 (496)
Q Consensus        95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~  174 (496)
                      ++.+..++||+....                     ..+..+.+|.+.|++++|+| + .+|++|+.||.|++|++....
T Consensus        29 gs~Dg~i~vWd~~~~---------------------~~~~~l~~H~~~V~~l~~s~-~-~~l~s~s~D~~i~iw~~~~~~   85 (355)
T d1nexb2          29 GADDKMIRVYDSINK---------------------KFLLQLSGHDGGVWALKYAH-G-GILVSGSTDRTVRVWDIKKGC   85 (355)
T ss_dssp             EETTTEEEEEETTTT---------------------EEEEEEECCSSCEEEEEEET-T-TEEEEEETTCCEEEEETTTTE
T ss_pred             EeCCCeEEEEECCCC---------------------cEEEEEECCCCCEEEEEEcC-C-CEEEEEecccccccccccccc
Confidence            346788999874310                     12334568999999999998 4 489999999999999998762


Q ss_pred             CccccCCCCCCCCceEEecCCC-CcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCcccc-----ccCCCC---
Q 010997          175 NRHAVLGATNSRPDLILTGHQD-NAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATA-----KSAGSS---  245 (496)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~h~~-~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~---  245 (496)
                                  .......+.. .......+.+++.++++++.|+.|++||+.+............     ......   
T Consensus        86 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d1nexb2          86 ------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  153 (355)
T ss_dssp             ------------EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred             ------------cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccce
Confidence                        2222222221 1345567788889999999999999999987533221111000     000000   


Q ss_pred             --------Ccee-------ccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccC
Q 010997          246 --------GSII-------KQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARV  310 (496)
Q Consensus       246 --------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~  310 (496)
                              ..+.       .......++.+..++....+.+..+.++...+.++.|+|.+ ..+++++.|+.|++||+++
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~  232 (355)
T d1nexb2         154 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLEN  232 (355)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTT
T ss_pred             eeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccc-eeeecccccceEEeeeccc
Confidence                    0000       00011234556677777777788888899999999999998 7899999999999999998


Q ss_pred             CCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEE-cCCCCCEEE
Q 010997          311 GTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQW-SPDKSSVFG  389 (496)
Q Consensus       311 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~-sp~~~~lla  389 (496)
                      +.  ....+.+|...|.+++|++   ++|++|+.||.|++||+++      ..  ..+..|...+.++.+ ++++. +++
T Consensus       233 ~~--~~~~~~~h~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~------~~--~~~~~~~~~~~~~~~~~~~~~-~l~  298 (355)
T d1nexb2         233 GE--LMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDAND------YS--RKFSYHHTNLSAITTFYVSDN-ILV  298 (355)
T ss_dssp             CC--EEEEECCCSSCCCEEEECS---SEEEEECTTSEEEEEETTT------CC--EEEEEECTTCCCCCEEEECSS-EEE
T ss_pred             cc--ccccccccccccccccccc---ceeeeeecccccccccccc------cc--eecccccCCceEEEEEcCCCC-EEE
Confidence            87  6777889999999999965   6899999999999999987      33  345566677766654 55554 665


Q ss_pred             EEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE-EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeec
Q 010997          390 SSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF-FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRM  467 (496)
Q Consensus       390 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~  467 (496)
                      +|+ |+.|+|||++++ +              ++ ....+|...|.+++|+|+  .++++++.|       |+++||-+
T Consensus       299 ~g~-d~~i~vwd~~tg-~--------------~~~~~~~~~~~~V~~v~~~~~--~~~~~~s~d-------g~~~l~~~  352 (355)
T d1nexb2         299 SGS-ENQFNIYNLRSG-K--------------LVHANILKDADQIWSVNFKGK--TLVAAVEKD-------GQSFLEIL  352 (355)
T ss_dssp             EEE-TTEEEEEETTTC-C--------------BCCSCTTTTCSEEEEEEEETT--EEEEEEESS-------SCEEEEEE
T ss_pred             EEe-CCEEEEEECCCC-C--------------EEEEEecCCCCCEEEEEEcCC--eEEEEEECC-------CcEEEEEE
Confidence            655 899999999874 1              22 124688999999999984  467766655       88766644

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=6.2e-29  Score=230.36  Aligned_cols=242  Identities=14%  Similarity=0.160  Sum_probs=160.1

Q ss_pred             CceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC------CCCCCC
Q 010997          187 PDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK------PGDGND  260 (496)
Q Consensus       187 ~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  260 (496)
                      ...++.||.+ +|++|+|+|++++|+||+.||+|++||++++..........    ......+.+.+.      ..++.+
T Consensus         4 ~~~~~~GH~~-~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h----~~~v~~v~~~~~g~~~~~~~d~~v   78 (299)
T d1nr0a2           4 IDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH----ATMITGIKTTSKGDLFTVSWDDHL   78 (299)
T ss_dssp             EEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC----SSCEEEEEECTTSCEEEEETTTEE
T ss_pred             cceEcCCCCC-CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC----CCcEEEEEeeccceeecccceeeE
Confidence            4568999998 79999999999999999999999999998765432221100    000000000000      112222


Q ss_pred             CCCCCCCcCC--eeee-ecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc
Q 010997          261 KAADGPSVGP--RGIY-NGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN  337 (496)
Q Consensus       261 ~~~~~~~~~~--~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  337 (496)
                      .+|+......  .... ..+...+.+++|+|++ .++++ +.++.+.+|+....    ..  ......+.+++|+| ++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~-~~~~~i~~~~~~~~----~~--~~~~~~~~~~~~s~-~~~  149 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVA-ACYKHIAIYSHGKL----TE--VPISYNSSCVALSN-DKQ  149 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEE-EESSEEEEEETTEE----EE--EECSSCEEEEEECT-TSC
T ss_pred             EEeccCCcccccccccccccccccccccccccc-ccccc-cccccccccccccc----cc--cccccccccccccc-ccc
Confidence            3333222111  1111 1245556667777666 33333 33456667763221    11  12345678999999 899


Q ss_pred             EEEEEcCCCcEEEEeCCCCCCCCCCCCc-eEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCC
Q 010997          338 LILTGSADNSVRMFDRRNLTSNGVGSPI-NKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTT  416 (496)
Q Consensus       338 ~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~  416 (496)
                      +|++|+.||.|++||+++      .... .....|...|++++|+|++.+ |++++.|+.|++||+......        
T Consensus       150 ~l~~g~~dg~i~~~d~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~~--------  214 (299)
T d1nr0a2         150 FVAVGGQDSKVHVYKLSG------ASVSEVKTIVHPAEITSVAFSNNGAF-LVATDQSRKVIPYSVANNFEL--------  214 (299)
T ss_dssp             EEEEEETTSEEEEEEEET------TEEEEEEEEECSSCEEEEEECTTSSE-EEEEETTSCEEEEEGGGTTEE--------
T ss_pred             cccccccccccccccccc------cccccccccccccccccccccccccc-ccccccccccccccccccccc--------
Confidence            999999999999999987      3332 234568999999999999985 679999999999999874221        


Q ss_pred             CCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          417 NYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       417 ~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                          .....+.+|...|++++|+|++.+++        +|+.||.|+|||+..
T Consensus       215 ----~~~~~~~~h~~~v~~l~~s~~~~~l~--------sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         215 ----AHTNSWTFHTAKVACVSWSPDNVRLA--------TGSLDNSVIVWNMNK  255 (299)
T ss_dssp             ----SCCCCCCCCSSCEEEEEECTTSSEEE--------EEETTSCEEEEETTC
T ss_pred             ----cccccccccccccccccccccccceE--------EEcCCCEEEEEECCC
Confidence                12234568999999999999887654        455569999999984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.6e-28  Score=231.90  Aligned_cols=286  Identities=13%  Similarity=0.148  Sum_probs=187.1

Q ss_pred             CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEE------ecCCCCcEEEEEeCCCcEEEE
Q 010997           95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIR------ELPQNTKIVATHTDSPDVLIW  168 (496)
Q Consensus        95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~------~~p~~~~~lat~~~dg~i~iw  168 (496)
                      ++.+..++||+.....+               ..|.........|...+..+.      ..+.+..++++++.||.|++|
T Consensus        30 ~S~D~~iriWd~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w   94 (393)
T d1sq9a_          30 CSGDGYLKVWDNKLLDN---------------ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY   94 (393)
T ss_dssp             EETTSEEEEEESBCCTT---------------CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred             EECCCeEEEEECCCCCC---------------CcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEE
Confidence            34678999998654222               122334445556665544333      222244578899999999999


Q ss_pred             eCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCC-----CCceEEecCCCcEEEEecCCccccccCCccccccCC
Q 010997          169 DVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPT-----EPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAG  243 (496)
Q Consensus       169 d~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~-----~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  243 (496)
                      ++.............  ........+.. .++.++|.++     +.++++++.||+|++|++...........     ..
T Consensus        95 ~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~-----~~  166 (393)
T d1sq9a_          95 RITREDETKKVIFEK--LDLLDSDMKKH-SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-----LN  166 (393)
T ss_dssp             EEEECTTTCCEEEEE--ECCSCTTGGGS-CEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-----TC
T ss_pred             EccCCCceeeeeccc--cceeeeccCCC-ceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee-----ee
Confidence            987653221110000  00000111222 3567777765     35789999999999999864321100000     00


Q ss_pred             CCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc----ceeee
Q 010997          244 SSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP----VIKVE  319 (496)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~  319 (496)
                      .....                 ...........+...+.+++|+|++  +|++|+.||+|+|||+++++..    ....+
T Consensus       167 ~~~~~-----------------~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l  227 (393)
T d1sq9a_         167 WSPTL-----------------ELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSM  227 (393)
T ss_dssp             CCCEE-----------------EEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred             eccce-----------------ecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccccccccccccccc
Confidence            00000                 0000111223455678999999987  7999999999999999887621    11234


Q ss_pred             ccCCCCeEEEEecCCCCcEEEEEcCCCc---EEEEeCCCCCCCCCCCCceEe-------------ccCCCCEEEEEEcCC
Q 010997          320 KAHDADLHCVDWNPLDDNLILTGSADNS---VRMFDRRNLTSNGVGSPINKF-------------EGHSAAVLCVQWSPD  383 (496)
Q Consensus       320 ~~~~~~v~~i~~sp~~~~~l~sgs~dg~---i~iwd~~~~~~~~~~~~~~~~-------------~~h~~~i~~l~~sp~  383 (496)
                      .+|...|++++|+| ++.+|++|+.|++   |++||+++      +..+..+             .+|...|++|+|+|+
T Consensus       228 ~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lwd~~~------g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd  300 (393)
T d1sq9a_         228 INNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEF------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS  300 (393)
T ss_dssp             -CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTT------CCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred             ccccceEEEccccc-ccceeeeecCCCCcceeeeccccc------ceeeeeeccccccccceeeeecccCceeeeccCCC
Confidence            57899999999999 9999999999874   99999987      4555544             489999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcc----eEEecCCCCcE
Q 010997          384 KSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVV----DFHWNASDPWT  445 (496)
Q Consensus       384 ~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~----~~~~~p~~~~l  445 (496)
                      ++ +|+||+.|++|+|||+.++               +++..+.+|.+.|.    .++|+|++..+
T Consensus       301 ~~-~l~S~s~D~~v~vWd~~~g---------------~~~~~l~gH~~~v~~~~~~~~~~~~~~~~  350 (393)
T d1sq9a_         301 GE-TLCSAGWDGKLRFWDVKTK---------------ERITTLNMHCDDIEIEEDILAVDEHGDSL  350 (393)
T ss_dssp             SS-EEEEEETTSEEEEEETTTT---------------EEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred             CC-eeEEECCCCEEEEEECCCC---------------CEEEEECCcCCcccCCccEEEECCCCCEE
Confidence            98 5789999999999999885               67777888887765    36777766543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.2e-27  Score=220.96  Aligned_cols=299  Identities=19%  Similarity=0.271  Sum_probs=206.9

Q ss_pred             CCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCC
Q 010997           95 GSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQP  174 (496)
Q Consensus        95 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~  174 (496)
                      ++.+..++||++...+                     .+....+|.+.|.+++|+|   ++|++|+.|+.+++|+.... 
T Consensus        33 gs~Dg~i~vWd~~~~~---------------------~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~~~~~-   87 (342)
T d2ovrb2          33 GSDDNTLKVWSAVTGK---------------------CLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETG-   87 (342)
T ss_dssp             EETTSCEEEEETTTCC---------------------EEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTT-
T ss_pred             EeCCCeEEEEECCCCC---------------------EEEEEeCCCCCEEEEEeCC---Cccccceecccccccccccc-
Confidence            4567889999753210                     1234458999999999987   38999999999999998876 


Q ss_pred             CccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCC
Q 010997          175 NRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPK  254 (496)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (496)
                                 ........+.. .+....  .....++.+..|+.+.+|+..++..........................
T Consensus        88 -----------~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (342)
T d2ovrb2          88 -----------ECIHTLYGHTS-TVRCMH--LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG  153 (342)
T ss_dssp             -----------EEEEEECCCSS-CEEEEE--EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred             -----------cceecccccce-eEeeee--cccccccccccceeEEEeecccccceeeeecccccceeeccccceeeee
Confidence                       22222222322 233332  3455678888899999999887643222111000000000000000111


Q ss_pred             CCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC
Q 010997          255 PGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL  334 (496)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~  334 (496)
                      ...+.+.+++......+..+.+|...+..+.+  ++ ..+++++.||.|++||++..+  .+.....|...+.++++++ 
T Consensus       154 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~-~~l~s~~~dg~i~~~d~~~~~--~~~~~~~~~~~v~~~~~~~-  227 (342)
T d2ovrb2         154 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGN--CIHTLTGHQSLTSGMELKD-  227 (342)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCC--EEEEECCCCSCEEEEEEET-
T ss_pred             cCCCeEEEeecccceeeEEEcCcccccccccC--CC-CEEEEEeCCCeEEEeecccce--eeeEecccccceeEEecCC-
Confidence            23455566666667777888888877776655  44 689999999999999999887  6777889999999998865 


Q ss_pred             CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec---cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCC
Q 010997          335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE---GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQ  411 (496)
Q Consensus       335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~  411 (496)
                        ++|++|+.||.|++||+..      ......+.   .|...+.++.++++   ++++|+.||.|+|||++++      
T Consensus       228 --~~l~s~s~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~Dg~i~iwd~~tg------  290 (342)
T d2ovrb2         228 --NILVSGNADSTVKIWDIKT------GQCLQTLQGPNKHQSAVTCLQFNKN---FVITSSDDGTVKLWDLKTG------  290 (342)
T ss_dssp             --TEEEEEETTSCEEEEETTT------CCEEEEECSTTSCSSCEEEEEECSS---EEEEEETTSEEEEEETTTC------
T ss_pred             --CEEEEEcCCCEEEEEeccc------ccccccccccceeeeceeecccCCC---eeEEEcCCCEEEEEECCCC------
Confidence              6999999999999999998      55555554   46677888888754   5789999999999999874      


Q ss_pred             CCCCCCCCCeeEEEe-----cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          412 GPRTTNYPAGLFFQH-----AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       412 ~~~~~~~~~~~~~~~-----~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                               +++..+     .+|...|++++|+|++ .++|++++|   |+.+..|++||+.
T Consensus       291 ---------~~i~~~~~~~~~~~~~~v~~v~~s~~~-~~la~g~~d---Gt~~~~l~~~Df~  339 (342)
T d2ovrb2         291 ---------EFIRNLVTLESGGSGGVVWRIRASNTK-LVCAVGSRN---GTEETKLLVLDFD  339 (342)
T ss_dssp             ---------CEEEEEEECTTGGGTCEEEEEEECSSE-EEEEEECSS---SSSCCEEEEEECC
T ss_pred             ---------CEEEEEecccCCCCCCCEEEEEECCCC-CEEEEEeCC---CCCeeEEEEEeCC
Confidence                     222222     4688899999999976 466666654   5556679999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.5e-26  Score=212.43  Aligned_cols=281  Identities=12%  Similarity=0.038  Sum_probs=195.0

Q ss_pred             CCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 010997           96 SVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN  175 (496)
Q Consensus        96 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~  175 (496)
                      +.+..++||++....                  .........+|.++|.+++|+|.++.+|++|+.||.|++|++...  
T Consensus        30 s~Dg~v~iwd~~~~~------------------~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~--   89 (342)
T d1yfqa_          30 SWDGSLTVYKFDIQA------------------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS--   89 (342)
T ss_dssp             ETTSEEEEEEEETTT------------------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS--
T ss_pred             ECCCeEEEEEccCCC------------------cceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc--
Confidence            468899999875321                  122345567899999999999977889999999999999999877  


Q ss_pred             ccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCC
Q 010997          176 RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKP  255 (496)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (496)
                                ........+.........+.++...+++++.|+++++||++........                     
T Consensus        90 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~---------------------  138 (342)
T d1yfqa_          90 ----------PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA---------------------  138 (342)
T ss_dssp             ----------SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEE---------------------
T ss_pred             ----------cccccccccccccccccccccccccccccccccccceeeccccccceee---------------------
Confidence                      3333444444434456666777889999999999999998754321110                     


Q ss_pred             CCCCCCCCCCCCcCCeeeeec--CCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc-eeeeccCCCCeEEEEec
Q 010997          256 GDGNDKAADGPSVGPRGIYNG--HEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-IKVEKAHDADLHCVDWN  332 (496)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~i~~s  332 (496)
                                     ......  .......+.+.+.+ ..+++++.|+.|++||++...... ......+...+.+..+.
T Consensus       139 ---------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (342)
T d1yfqa_         139 ---------------VKNLNSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL  202 (342)
T ss_dssp             ---------------EEESCSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred             ---------------ecccccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEee
Confidence                           011111  12233455666666 689999999999999998776322 22333455667777777


Q ss_pred             CCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCC---------ceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECC
Q 010997          333 PLDDNLILTGSADNSVRMFDRRNLTSNGVGSP---------INKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYE  403 (496)
Q Consensus       333 p~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~---------~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~  403 (496)
                      +.++..+++++.||.+.+|++...........         ......|...|++|+|+|++.+ ||||+.||.|+|||+.
T Consensus       203 ~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEETT
T ss_pred             cCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccE-EEEECCCCEEEEEECC
Confidence            75788999999999999999876332111111         1122457778999999999995 6799999999999998


Q ss_pred             CCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          404 KVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +.               ..+..+..+ ..+..++|+|++..+++++++        +++++|...
T Consensus       282 ~~---------------~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sd--------d~~~~~~~~  322 (342)
T d1yfqa_         282 TR---------------KKIKNFAKF-NEDSVVKIACSDNILCLATSD--------DTFKTNAAI  322 (342)
T ss_dssp             TT---------------EEEEECCCC-SSSEEEEEEECSSEEEEEEEC--------THHHHCSSS
T ss_pred             CC---------------cEEEEecCC-CCCEEEEEEeCCCEEEEEEcC--------CcEEEeeee
Confidence            74               445444432 344557777777776654443        577888665

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.7e-26  Score=212.51  Aligned_cols=254  Identities=13%  Similarity=0.138  Sum_probs=160.7

Q ss_pred             CCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCC
Q 010997          186 RPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADG  265 (496)
Q Consensus       186 ~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (496)
                      +++.++.||.. +|++|+|+|    |+||+.||+|++||+.+............... ....++.   ...+..+.+|+.
T Consensus         4 ~~i~~l~gH~~-~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~~h~~~V~~~~~~-~~~~~~s---~s~D~~v~~w~~   74 (287)
T d1pgua2           4 EVLKTISGHNK-GITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS-KAQEYSS---ISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEEECCCSS-CEEEEETTT----TEEEETTSCEEETTTTEEECCCCSCEEEEECC-STTCCEE---EETTTEEEETTE
T ss_pred             ceeEEECCCCC-ceEEEEECc----EEEEeCCCeEEEEECCCCCCCCCCCEEEEEec-CCCeEEE---Eeeccccccccc
Confidence            67789999998 799999987    99999999999999875432100000000000 0000000   000111122211


Q ss_pred             CCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC
Q 010997          266 PSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD  345 (496)
Q Consensus       266 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d  345 (496)
                      .       .......+..+.+++++ ..+++ +.++.+.+|+...+.  ..... .+...+.  ++++ ++..+++++.+
T Consensus        75 ~-------~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~--~~~~~-~~~~~~~--~~~~-~~~~~~v~~~~  139 (287)
T d1pgua2          75 T-------KHEFGSQPKVASANNDG-FTAVL-TNDDDLLILQSFTGD--IIKSV-RLNSPGS--AVSL-SQNYVAVGLEE  139 (287)
T ss_dssp             E-------EEECSSCEEEEEECSSS-EEEEE-ETTSEEEEEETTTCC--EEEEE-ECSSCEE--EEEE-CSSEEEEEETT
T ss_pred             c-------ccccccceeeeeeccCC-ceEEE-eecccceeeecccee--eeeec-cccceee--eeec-cCcceeeeccc
Confidence            1       01123445666666665 33333 344556667666655  33333 2333443  4555 56677777666


Q ss_pred             -CcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeE
Q 010997          346 -NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLF  423 (496)
Q Consensus       346 -g~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  423 (496)
                       +.|++|++..      ......+ ..|...|++++|+|++.+ |++|+.||.|++||+....              ...
T Consensus       140 ~~~v~~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~g~~dg~i~i~d~~~~~--------------~~~  198 (287)
T d1pgua2         140 GNTIQVFKLSD------LEVSFDLKTPLRAKPSYISISPSETY-IAAGDVMGKILLYDLQSRE--------------VKT  198 (287)
T ss_dssp             TSCEEEEETTE------EEEEEECSSCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTE--------------EEE
T ss_pred             cceeeeeeccc------cceeeeeeeccCCceeEEEeccCccc-cccccccccccceeecccc--------------ccc
Confidence             4799999886      3333333 357889999999999985 6799999999999998741              122


Q ss_pred             EEecCCCCCcceEEecCCCC---------cEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997          424 FQHAGHRDKVVDFHWNASDP---------WTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  494 (496)
Q Consensus       424 ~~~~~h~~~V~~~~~~p~~~---------~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~  494 (496)
                      ....+|...|.+++|+|.+.         .+++       ||+.|++|+||++..     ..+.+..+.+|.+.|.+++|
T Consensus       199 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~-------sgs~D~~i~iw~~~~-----~~~~~~~~~~h~~~V~~v~~  266 (287)
T d1pgua2         199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVA-------TGSLDTNIFIYSVKR-----PMKIIKALNAHKDGVNNLLW  266 (287)
T ss_dssp             CCSCCCSSCEEEEEECCCC------CCSCCEEE-------EEETTSCEEEEESSC-----TTCCEEETTSSTTCEEEEEE
T ss_pred             ccccccccccceeeecccccccccccCCCCeeE-------eecCCCeEEEEECCC-----CCeEEEEeCCCCCCeEEEEE
Confidence            23568999999999998653         3455       455569999999973     34566778899999999999


Q ss_pred             CC
Q 010997          495 KP  496 (496)
Q Consensus       495 sP  496 (496)
                      +|
T Consensus       267 ~~  268 (287)
T d1pgua2         267 ET  268 (287)
T ss_dssp             EE
T ss_pred             CC
Confidence            86

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-24  Score=199.38  Aligned_cols=226  Identities=19%  Similarity=0.370  Sum_probs=169.1

Q ss_pred             ceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCC
Q 010997          188 DLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPS  267 (496)
Q Consensus       188 ~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (496)
                      +.....|.. .|+|++|  ++++||||+.||+|+|||+++++                                      
T Consensus         8 i~~~~~~~~-~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~--------------------------------------   46 (293)
T d1p22a2           8 IHCRSETSK-GVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE--------------------------------------   46 (293)
T ss_dssp             EECCCSSCC-CEEEEEC--CSSEEEEEESSSCEEEEESSSCC--------------------------------------
T ss_pred             EeccCCCCC-CEEEEEE--cCCEEEEEeCCCeEEEEECCCCc--------------------------------------
Confidence            344456666 5888765  78999999999999999997543                                      


Q ss_pred             cCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc---------------------------------
Q 010997          268 VGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP---------------------------------  314 (496)
Q Consensus       268 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------------  314 (496)
                        ++..+.+|.+.|.+++|+  + ++|++|+.|+.|++|+++.+...                                 
T Consensus        47 --~~~~l~~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (293)
T d1p22a2          47 --CKRILTGHTGSVLCLQYD--E-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD  121 (293)
T ss_dssp             --EEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEE
T ss_pred             --EEEEEecCCCCEeeeecc--c-ceeecccccccccccccccccccccccccccccccccccccceeecccccceeEee
Confidence              346788899999998874  3 68999999999999998765310                                 


Q ss_pred             --------ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCC
Q 010997          315 --------VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS  386 (496)
Q Consensus       315 --------~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~  386 (496)
                              .......|...+.++.+.   ...+++++.|+.|++||+++      +..+..+.++...|..+.+++.   
T Consensus       122 ~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~s~d~~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~---  189 (293)
T d1p22a2         122 MASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTST------CEFVRTLNGHKRGIACLQYRDR---  189 (293)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEEETT---
T ss_pred             ccccccccccccccccccccccceec---ccccccccCCCceeeecCCC------CcEEEEEcccccccccccCCCC---
Confidence                    011123455666666664   46788899999999999998      7889999999999999988754   


Q ss_pred             EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997          387 VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       387 llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~  466 (496)
                      .+++++.||.|++||++..               ..+....+|...|..+.+  ++. .++++       +.||.|+|||
T Consensus       190 ~l~~~~~dg~i~i~d~~~~---------------~~~~~~~~~~~~v~~~~~--~~~-~l~sg-------~~dg~i~iwd  244 (293)
T d1p22a2         190 LVVSGSSDNTIRLWDIECG---------------ACLRVLEGHEELVRCIRF--DNK-RIVSG-------AYDGKIKVWD  244 (293)
T ss_dssp             EEEEEETTSCEEEEETTTC---------------CEEEEECCCSSCEEEEEC--CSS-EEEEE-------ETTSCEEEEE
T ss_pred             eEEEecCCCEEEEEecccc---------------eeeeeecccceeeeeccc--cce-EEEEE-------cCCCEEEEEE
Confidence            4679999999999999874               456667788888876554  344 45544       4459999999


Q ss_pred             cCCCCc---CCchHHHHHHHhccceEEEeccCC
Q 010997          467 MSDLIY---RPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       467 ~~~~~~---~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      +.....   ......+..+.+|.++|++++|+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~  277 (293)
T d1p22a2         245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE  277 (293)
T ss_dssp             HHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS
T ss_pred             CCCCccccccCCceeeEEecCCCCCEEEEEEcC
Confidence            863211   112345667889999999999875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=4.5e-25  Score=209.22  Aligned_cols=260  Identities=13%  Similarity=0.096  Sum_probs=182.1

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCCC--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEE
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDSP--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~s  213 (496)
                      .++|.+.|.+++|+| +++.|++++.+.  .|++||+.++.             ...+..|.. .|.+++|+|++++|++
T Consensus        38 ~~~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~-------------~~~~~~~~~-~v~~~~~spdg~~l~~  102 (360)
T d1k32a3          38 KVPEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGK-------------AEKFEENLG-NVFAMGVDRNGKFAVV  102 (360)
T ss_dssp             ECSCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCC-------------EEECCCCCC-SEEEEEECTTSSEEEE
T ss_pred             EccCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCc-------------EEEeeCCCc-eEEeeeecccccccce
Confidence            358999999999999 888887665543  79999998762             235567776 6899999999999999


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      ++.++.+++|++.++..                                        ...+..|...+.+++|+|++ .+
T Consensus       103 ~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~spdg-~~  141 (360)
T d1k32a3         103 ANDRFEIMTVDLETGKP----------------------------------------TVIERSREAMITDFTISDNS-RF  141 (360)
T ss_dssp             EETTSEEEEEETTTCCE----------------------------------------EEEEECSSSCCCCEEECTTS-CE
T ss_pred             eccccccccccccccce----------------------------------------eeeeecccccccchhhccce-ee
Confidence            99999999999975432                                        25667788899999999999 56


Q ss_pred             EEEE----------cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCC-CC
Q 010997          294 FCSV----------GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNG-VG  362 (496)
Q Consensus       294 l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~-~~  362 (496)
                      |+.+          ..++.+++||+.+++   ......+...+..++|+| ++.+|++++.++.+++||........ ..
T Consensus       142 la~~~~~~~~~~~~~~~~~~~v~d~~~~~---~~~~~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~~~~~~~~  217 (360)
T d1k32a3         142 IAYGFPLKHGETDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVV  217 (360)
T ss_dssp             EEEEEEECSSTTCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSC
T ss_pred             eeeeccccccceeeccccceeeeccccCc---eeeecccccccccccccC-CCCEEEEEeCCCceEcccccccceeeccc
Confidence            6643          345679999998776   333446778889999999 99999999999999999865421000 00


Q ss_pred             ------------------------------------CCceEe----------ccCCCCEEEEEEcCCCCC--EEEEEeCC
Q 010997          363 ------------------------------------SPINKF----------EGHSAAVLCVQWSPDKSS--VFGSSAED  394 (496)
Q Consensus       363 ------------------------------------~~~~~~----------~~h~~~i~~l~~sp~~~~--llas~~~d  394 (496)
                                                          ..+..+          ..+.+.+..+.+.+.+..  ++++++.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (360)
T d1k32a3         218 SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEK  297 (360)
T ss_dssp             BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCC
T ss_pred             cceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCC
Confidence                                                001111          112222233333332221  24566678


Q ss_pred             CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCC
Q 010997          395 GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRP  474 (496)
Q Consensus       395 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~  474 (496)
                      +.|++||+...               + +.   .|.+.|.+++|+|||.+++        +++.||.|++|++.      
T Consensus       298 ~~i~~~d~~~~---------------~-~~---~~~~~v~~~~~SpDG~~l~--------~~~~Dg~i~v~d~~------  344 (360)
T d1k32a3         298 GVLLKYDVKTR---------------K-VT---EVKNNLTDLRLSADRKTVM--------VRKDDGKIYTFPLE------  344 (360)
T ss_dssp             EEEEEEETTTC---------------C-EE---EEEEEEEEEEECTTSCEEE--------EEETTSCEEEEESS------
T ss_pred             CEEEEEECCCC---------------e-EE---EecCCcCEEEECCCCCEEE--------EEECCCeEEEEECC------
Confidence            89999998873               1 11   2334589999999998765        44446999999998      


Q ss_pred             chHHHHHHHhccce
Q 010997          475 QDEVLAELEKFKAH  488 (496)
Q Consensus       475 ~~~~~~~l~~h~~~  488 (496)
                      .++...++..+..|
T Consensus       345 ~~~~~~~~~~d~~~  358 (360)
T d1k32a3         345 KPEDERTVETDKRP  358 (360)
T ss_dssp             CTTSCEECCCCSSC
T ss_pred             CCCcceEEEecccc
Confidence            44444444444333

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=5e-24  Score=201.87  Aligned_cols=193  Identities=10%  Similarity=0.024  Sum_probs=157.0

Q ss_pred             eEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCC--cEE
Q 010997          144 NRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDK--SVV  221 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg--~i~  221 (496)
                      ..-.|+|.+++++|+++. |.|++||+..+            ... . .+|.. .|.+++|+|||++|++++.+.  .|+
T Consensus         6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~------------~~~-~-~~~~~-~v~~~~~spDg~~l~~~~~~~g~~v~   69 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGT------------YVL-K-VPEPL-RIRYVRRGGDTKVAFIHGTREGDFLG   69 (360)
T ss_dssp             GEEEEEECGGGCEEEEET-TEEEEECTTSS------------BEE-E-CSCCS-CEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred             hcccccCCCCCEEEEEEC-CeEEEEECCCC------------cEE-E-ccCCC-CEEEEEECCCCCEEEEEEcCCCCEEE
Confidence            345699988999998875 79999999776            222 2 26776 689999999999988776553  799


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      +||.+++..                                         ..+..|...|.+++|+|++ .+|++++.++
T Consensus        70 v~d~~~~~~-----------------------------------------~~~~~~~~~v~~~~~spdg-~~l~~~~~~~  107 (360)
T d1k32a3          70 IYDYRTGKA-----------------------------------------EKFEENLGNVFAMGVDRNG-KFAVVANDRF  107 (360)
T ss_dssp             EEETTTCCE-----------------------------------------EECCCCCCSEEEEEECTTS-SEEEEEETTS
T ss_pred             EEECCCCcE-----------------------------------------EEeeCCCceEEeeeecccc-cccceecccc
Confidence            999976432                                         4566789999999999999 7999999999


Q ss_pred             eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc----------CCCcEEEEeCCCCCCCCCCCCceEeccC
Q 010997          302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS----------ADNSVRMFDRRNLTSNGVGSPINKFEGH  371 (496)
Q Consensus       302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs----------~dg~i~iwd~~~~~~~~~~~~~~~~~~h  371 (496)
                      .+++|++..+.  .......|...+.+++|+| ++.+|+.++          .++.+++||+..       .....+..+
T Consensus       108 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~-------~~~~~~~~~  177 (360)
T d1k32a3         108 EIMTVDLETGK--PTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-------RKIFAATTE  177 (360)
T ss_dssp             EEEEEETTTCC--EEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTT-------TEEEECSCS
T ss_pred             ccccccccccc--eeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeecccc-------Cceeeeccc
Confidence            99999998887  5566678889999999999 899988643          445799999987       344556667


Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ...+..++|+|+|++ |++++.|+.+.+||....
T Consensus       178 ~~~~~~~~~spdg~~-l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         178 NSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             SSBEEEEEECTTSCE-EEEEESCCCCCEECSSSS
T ss_pred             ccccccccccCCCCE-EEEEeCCCceEccccccc
Confidence            888999999999996 568899999999997653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=3.2e-23  Score=201.70  Aligned_cols=333  Identities=10%  Similarity=0.034  Sum_probs=203.4

Q ss_pred             CCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCC
Q 010997           96 SVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPN  175 (496)
Q Consensus        96 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~  175 (496)
                      +.++.+.||+...                      .+.+..+.+...+..++|+| |+++|++++.||+|++||+.+...
T Consensus        39 ~~dg~v~vwD~~t----------------------~~~~~~l~~g~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~   95 (426)
T d1hzua2          39 RDAGQIALVDGDS----------------------KKIVKVIDTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEP   95 (426)
T ss_dssp             TTTTEEEEEETTT----------------------CSEEEEEECCSSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSC
T ss_pred             cCCCEEEEEECCC----------------------CcEEEEEeCCCCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCce
Confidence            3678888887532                      13344455556799999999 899999999999999999998721


Q ss_pred             ccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-EecCCCcEEEEecCCccccccCCcccc------ccCCCCCce
Q 010997          176 RHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSATDPATA------KSAGSSGSI  248 (496)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg~~Dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~  248 (496)
                      ...       ..+....+|.. .+.+++|+|||++|+ ++..++.+++||..+............      ....+....
T Consensus        96 ~~~-------~~i~~~~~~~~-~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (426)
T d1hzua2          96 TKV-------AEIKIGIEARS-VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  167 (426)
T ss_dssp             EEE-------EEEECCSEEEE-EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             eEE-------EEEeCCCCCcc-eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeE
Confidence            110       00111235555 567899999999865 555899999999987644322111000      001111111


Q ss_pred             eccCCC--------CCCCCCCCCCCCCcC-CeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeee
Q 010997          249 IKQSPK--------PGDGNDKAADGPSVG-PRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE  319 (496)
Q Consensus       249 ~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  319 (496)
                      +.....        ...+.+......... .......+...+.++.|+|++..++++...+..+.+++..+++.......
T Consensus       168 i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         168 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence            111110        001111111111111 12234467778899999999966677777888999999988773222222


Q ss_pred             ccCCCCeEEEEecCCCCc--EEEEEcCCCcEEEEeCCCCCC-CCCCCCceEeccCCCCEEEEEEcCCCCCEEE------E
Q 010997          320 KAHDADLHCVDWNPLDDN--LILTGSADNSVRMFDRRNLTS-NGVGSPINKFEGHSAAVLCVQWSPDKSSVFG------S  390 (496)
Q Consensus       320 ~~~~~~v~~i~~sp~~~~--~l~sgs~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~i~~l~~sp~~~~lla------s  390 (496)
                      ..+......+.+.+....  ..++.+.|+.+.+|+...... ...++....+.+|...+..++|+|++.++++      +
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s  327 (426)
T d1hzua2         248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD  327 (426)
T ss_dssp             SSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSS
T ss_pred             CCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCC
Confidence            222222333333321222  223445688888888765321 1114667789999999999999999997543      3


Q ss_pred             EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          391 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       391 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ++.|++|+|||+.+.......      .+......+..|...|..++|+|+|.++++|+..   +++.||.|+|||..
T Consensus       328 ~~~~~tv~vwd~~t~~~~~~~------~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~---~~~~~~~i~v~D~~  396 (426)
T d1hzua2         328 ARISQSVAVFDLKNLDAKYQV------LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN---GKNDSSALVVVDDK  396 (426)
T ss_dssp             HHHHTCEEEEETTCTTSCCEE------ECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECC---CTTSCCEEEEEETT
T ss_pred             cccCCEEEEEECCCCCcCeEE------eccchhcccCCCCccEEEEEECCCCCEEEEEEec---CCCCCCeEEEEECC
Confidence            456889999999875221100      0000001234566779999999999999888743   35668999999998

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=2.2e-22  Score=195.70  Aligned_cols=284  Identities=8%  Similarity=0.033  Sum_probs=192.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCccccccC
Q 010997          155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSAT  234 (496)
Q Consensus       155 ~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~  234 (496)
                      ++++.+.||+|+|||+.++            +.+.++..|..  +.+++|+|||++|++++.|++|++||+.++......
T Consensus        34 ~~V~~~~dg~v~vwD~~t~------------~~~~~l~~g~~--~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~   99 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSK------------KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA   99 (426)
T ss_dssp             EEEEETTTTEEEEEETTTC------------SEEEEEECCSS--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             EEEEEcCCCEEEEEECCCC------------cEEEEEeCCCC--eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE
Confidence            5678889999999999998            67778888754  799999999999999999999999999875432110


Q ss_pred             CccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcc
Q 010997          235 DPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSP  314 (496)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  314 (496)
                                                         .+....+|...+.+++|+|+|..+++++..++.+++||.....  
T Consensus       100 -----------------------------------~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~--  142 (426)
T d1hzua2         100 -----------------------------------EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE--  142 (426)
T ss_dssp             -----------------------------------EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC--
T ss_pred             -----------------------------------EEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc--
Confidence                                               0122335667788889999996556777799999999998876  


Q ss_pred             ceeeeccCC-----------CCeEEEEecCCCCcEEEE-EcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC
Q 010997          315 VIKVEKAHD-----------ADLHCVDWNPLDDNLILT-GSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP  382 (496)
Q Consensus       315 ~~~~~~~~~-----------~~v~~i~~sp~~~~~l~s-gs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp  382 (496)
                      .......|.           .....+.+++ ++..++. ....+.+.+++.....     ........+...+..+.|+|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-d~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  216 (426)
T d1hzua2         143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASH-EHPEFIVNVKETGKVLLVNYKDID-----NLTVTSIGAAPFLADGGWDS  216 (426)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEECSSSS-----SCEEEEEECCSSEEEEEECT
T ss_pred             eeEEeeccCCCccceeecCCCceeEEEECC-CCCEEEEecCCCCeEEEEEecccc-----ceeeEEeccCCccEeeeECC
Confidence            343333333           3345556666 4444333 3334556666655421     22233446788899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcccCCCCC--------------------------C-------------CCCCCeeE
Q 010997          383 DKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPR--------------------------T-------------TNYPAGLF  423 (496)
Q Consensus       383 ~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~--------------------------~-------------~~~~~~~~  423 (496)
                      ++++++++...+..+.+++.............                          .             ........
T Consensus       217 ~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~  296 (426)
T d1hzua2         217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV  296 (426)
T ss_dssp             TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE
T ss_pred             CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe
Confidence            99988877777888999998763221100000                          0             00112456


Q ss_pred             EEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCch---HHHHHHHhccceEEEeccCC
Q 010997          424 FQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQD---EVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       424 ~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~---~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ..+.+|...+..++|+|++.+++++.+.. .+++.|++|+|||+.......+-   .....+..|...|.+++|||
T Consensus       297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~-~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp  371 (426)
T d1hzua2         297 AELQGQGGGSLFIKTHPKSSHLYVDTTFN-PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK  371 (426)
T ss_dssp             EEEECSSSCCCCEECCTTCSEEEECCTTC-SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS
T ss_pred             EEEecCCCceeEEEcCCCCceEEEeecCC-CCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC
Confidence            67889999999999999999887644321 13455799999999853221111   11233445677899999998

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=7.5e-21  Score=175.00  Aligned_cols=256  Identities=12%  Similarity=0.117  Sum_probs=188.2

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEE-EEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCc
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIV-ATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPY  210 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~l-at~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~  210 (496)
                      +..+.+...+.+..++|+| ++++| ++++.++.|++||+.+.            +....+..|..  +..++|++++.+
T Consensus        23 ~~~~~i~~g~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~------------~~~~~~~~~~~--~~~~~~~~~~~~   87 (301)
T d1l0qa2          23 KVTATIPVGSNPMGAVISP-DGTKVYVANAHSNDVSIIDTATN------------NVIATVPAGSS--PQGVAVSPDGKQ   87 (301)
T ss_dssp             EEEEEEECSSSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTT------------EEEEEEECSSS--EEEEEECTTSSE
T ss_pred             eEEEEEECCCCceEEEEeC-CCCEEEEEECCCCEEEEEECCCC------------ceeeeeecccc--cccccccccccc
Confidence            3455666667789999999 66655 67788999999999988            55667777765  579999999885


Q ss_pred             -eEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          211 -VLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       211 -l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                       ++++..++.+.+|+..++..                                        ...+. +...+.++.|+|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~-~~~~~~~~~~~~d  126 (301)
T d1l0qa2          88 VYVTNMASSTLSVIDTTSNTV----------------------------------------AGTVK-TGKSPLGLALSPD  126 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEE----------------------------------------EEEEE-CSSSEEEEEECTT
T ss_pred             ccccccccceeeeccccccee----------------------------------------eeecc-ccccceEEEeecC
Confidence             45667788999999875432                                        12333 3456788999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCCceEe
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      +..+++++..++.+.+|+..+..  ..... .+...+.+++++| ++..+++++. ++.+.+|+...      ......+
T Consensus       127 g~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  196 (301)
T d1l0qa2         127 GKKLYVTNNGDKTVSVINTVTKA--VINTV-SVGRSPKGIAVTP-DGTKVYVANFDSMSISVIDTVT------NSVIDTV  196 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTE--EEEEE-ECCSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEE
T ss_pred             CCeeeeeeccccceeeeeccccc--eeeec-ccCCCceEEEeec-cccceeeecccccccccccccc------eeeeecc
Confidence            97777888889999999998876  34443 4556789999999 6766666555 46777887776      3444444


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEe--CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEE
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSA--EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~  446 (496)
                      . ....+..++|++++..+++++.  .++.|.+||+.+.               +++..+.. ...+.+++|+|++.+++
T Consensus       197 ~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~---------------~~~~~~~~-~~~~~~va~spdg~~l~  259 (301)
T d1l0qa2         197 K-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---------------KITARIPV-GPDPAGIAVTPDGKKVY  259 (301)
T ss_dssp             E-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---------------EEEEEEEC-CSSEEEEEECTTSSEEE
T ss_pred             c-ccCCcceeeccccccccccccccceeeeeeeeecCCC---------------eEEEEEcC-CCCEEEEEEeCCCCEEE
Confidence            4 4566789999999997765543  3578999999874               33333333 34679999999999888


Q ss_pred             EEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHH
Q 010997          447 VSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELE  483 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~  483 (496)
                      ++++.|       ++|++||+.      ++++++++.
T Consensus       260 va~~~~-------~~i~v~D~~------t~~~~~~~~  283 (301)
T d1l0qa2         260 VALSFC-------NTVSVIDTA------TNTITATMA  283 (301)
T ss_dssp             EEETTT-------TEEEEEETT------TTEEEEEEE
T ss_pred             EEECCC-------CeEEEEECC------CCeEEEEEe
Confidence            866655       999999998      555555543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=6.2e-21  Score=185.25  Aligned_cols=290  Identities=10%  Similarity=-0.013  Sum_probs=181.3

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LS  213 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~s  213 (496)
                      ..+.....+..++|+| |+++|++++.||.|++||+.+......       ..+....+|.+ .+.+..|+|||++| ++
T Consensus        56 ~~~~~g~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~-------~~i~~~~~~~~-~~~s~~~SpDG~~l~vs  126 (432)
T d1qksa2          56 TVLDTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTV-------AEIKIGSEARS-IETSKMEGWEDKYAIAG  126 (432)
T ss_dssp             EEEECSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEE-------EEEECCSEEEE-EEECCSTTCTTTEEEEE
T ss_pred             EEEeCCCCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEE-------EEEecCCCCCC-eEEecccCCCCCEEEEE
Confidence            3343335699999999 999999999999999999987621110       01112234544 57788999999976 68


Q ss_pred             ecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCce
Q 010997          214 GGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       214 g~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  293 (496)
                      ++.+++|++||..++...........                             ........+......+.++|++..+
T Consensus       127 ~~~~~~v~i~d~~t~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~v~~s~dg~~~  177 (432)
T d1qksa2         127 AYWPPQYVIMDGETLEPKKIQSTRGM-----------------------------TYDEQEYHPEPRVAAILASHYRPEF  177 (432)
T ss_dssp             EEETTEEEEEETTTCCEEEEEECCEE-----------------------------CTTTCCEESCCCEEEEEECSSSSEE
T ss_pred             cCCCCeEEEEeCccccceeeeccCCc-----------------------------cccceeccCCCceeEEEECCCCCEE
Confidence            88899999999987654322111000                             0000112345567788999999777


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCceEec---
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFE---  369 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~~---  369 (496)
                      +++...++.|.+||....+...+... .+...+..++|+| ++.++++++ .++.+.++|..+      ...+..+.   
T Consensus       178 ~vs~~~~~~i~~~d~~~~~~~~~~~i-~~g~~~~~~~~sp-dg~~~~va~~~~~~v~v~d~~~------~~~~~~~~~g~  249 (432)
T d1qksa2         178 IVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG-SHRYFITAANARNKLVVIDTKE------GKLVAIEDTGG  249 (432)
T ss_dssp             EEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTT------TEEEEEEECSS
T ss_pred             EEEEccCCeEEEEEccCCCcceEEEE-cccCccccceECC-CCCEEEEeccccceEEEeeccc------ceEEEEeccCc
Confidence            78889999999999987763222232 5667889999999 888666655 456899999887      44443332   


Q ss_pred             --cCCCCEEEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEec-------
Q 010997          370 --GHSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-------  439 (496)
Q Consensus       370 --~h~~~i~~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~-------  439 (496)
                        .|........+...+. +.++.. .++.|.+|+........        ...........+.+....++.+       
T Consensus       250 ~~~~~~~~~~~~~~~~g~-~~~~~~lg~~~v~~~~~~~~~~~~--------~~~~v~~~~~~~~g~~~~~~s~p~~~~lw  320 (432)
T d1qksa2         250 QTPHPGRGANFVHPTFGP-VWATSHMGDDSVALIGTDPEGHPD--------NAWKILDSFPALGGGSLFIKTHPNSQYLY  320 (432)
T ss_dssp             SSBCCTTCEEEEETTTEE-EEEEEBSSSSEEEEEECCTTTCTT--------TBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred             cccccCcccceecCCCCc-eecccccCCceEEecccccccccc--------cccEEEEEEEcCCCCeEEEEecCCcccee
Confidence              2333444455554444 343433 36778888765432110        0011122222222222222222       


Q ss_pred             -----------------CCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          440 -----------------ASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       440 -----------------p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                                       |++..+.        +++.|+.+++|++.      ++   +.+..|..+|..++|||
T Consensus       321 ~~~~~~~~~~~~~sv~vpDg~~la--------~~s~d~~~k~w~~~------~~---~~l~~~~~~v~~~~fS~  377 (432)
T d1qksa2         321 VDATLNPEAEISGSVAVFDIKAMT--------GDGSDPEFKTLPIA------EW---AGITEGQPRVVQGEFNK  377 (432)
T ss_dssp             EECTTCSSHHHHTCEEEEEGGGCC--------CSSSCCCEEEECHH------HH---HTCCSSCCEEEEEEECT
T ss_pred             ecccCCCCCCeeeEEEEEechhhc--------ccccCCceEecccc------cc---cccCCCCCcEEEeEECC
Confidence                             4444333        78888999999886      33   44557888999999998

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.2e-18  Score=162.51  Aligned_cols=289  Identities=10%  Similarity=0.165  Sum_probs=195.3

Q ss_pred             eEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEE-EEEeCC
Q 010997           84 RQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIV-ATHTDS  162 (496)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~l-at~~~d  162 (496)
                      +|.+|+++    ...+.++||++...                   ..++.++++.|.+.|..|+|+| ++++| +++..|
T Consensus         3 ~~~v~v~~----~~~~~I~v~~~~~~-------------------~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d   58 (333)
T d1ri6a_           3 KQTVYIAS----PESQQIHVWNLNHE-------------------GALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPE   58 (333)
T ss_dssp             EEEEEEEE----GGGTEEEEEEECTT-------------------SCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTT
T ss_pred             ceEEEEEC----CCCCcEEEEEEcCC-------------------CCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCC
Confidence            57788865    35678889876421                   1245677889999999999999 77766 555568


Q ss_pred             CcEEEEeCCCCCCccccCCCCCCCCceEEecC--CCCcceeeeecCCCCceEEecC-CCcEEEEecCCccccccCCcccc
Q 010997          163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGH--QDNAEFALAMCPTEPYVLSGGK-DKSVVLWSIQDHITSSATDPATA  239 (496)
Q Consensus       163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h--~~~~v~~l~~~p~~~~l~sg~~-Dg~i~iwd~~~~~~~~~~~~~~~  239 (496)
                      +.|++|++....            ....+..+  ....+..++|+|+|++|++++. +++|.+|+.......        
T Consensus        59 ~~i~~~~i~~~~------------~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~--------  118 (333)
T d1ri6a_          59 FRVLAYRIAPDD------------GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV--------  118 (333)
T ss_dssp             TEEEEEEECTTT------------CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE--------
T ss_pred             CeEEEEEEeCCC------------CcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccce--------
Confidence            999999998762            11222211  1123578999999998888774 778999987643221        


Q ss_pred             ccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCcccee--
Q 010997          240 KSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIK--  317 (496)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--  317 (496)
                                                    .......+...+.++.++|++...++....+..|.+|+..........  
T Consensus       119 ------------------------------~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  168 (333)
T d1ri6a_         119 ------------------------------GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP  168 (333)
T ss_dssp             ------------------------------EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred             ------------------------------ecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeec
Confidence                                          112334566678889999999555555667788999998776521111  


Q ss_pred             --eeccCCCCeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCCCCCCCCCceEe------ccCCCCEEEEEEcCCCCCEE
Q 010997          318 --VEKAHDADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSNGVGSPINKF------EGHSAAVLCVQWSPDKSSVF  388 (496)
Q Consensus       318 --~~~~~~~~v~~i~~sp~~~~~l~-sgs~dg~i~iwd~~~~~~~~~~~~~~~~------~~h~~~i~~l~~sp~~~~ll  388 (496)
                        ...........++|++ ++.+++ +....+...+|+.......  .......      .........+++++++++++
T Consensus       169 ~~~~~~~g~~p~~i~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         169 AEVTTVEGAGPRHMVFHP-NEQYAYCVNELNSSVDVWELKDPHGN--IECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEECSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEESSCTTSC--CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeeeeecCCCccEEEEec-cceeEEeeccccCceEEEeecccccc--eeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence              1223456678999999 665554 5556678888887653210  0111111      12335677899999999888


Q ss_pred             EEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          389 GSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       389 as~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +++..++.+.+|++...+.            ...+..+..+...+.+++|+|+|++|++++++       ++.|+||++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~-------~~~v~v~~id  306 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGS------------VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK-------SHHISVYEIV  306 (333)
T ss_dssp             EEETTTTEEEEEEECTTSC------------CEEEEEEEECSSSCCCEEECTTSSEEEEECTT-------TCEEEEEEEE
T ss_pred             eecccCCeEEEEEEcCCCC------------EEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC-------CCeEEEEEEE
Confidence            8888899999999876422            22333333445668899999999998875554       4999999775

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=1.9e-19  Score=165.47  Aligned_cols=248  Identities=12%  Similarity=0.132  Sum_probs=183.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEecCCcccccc
Q 010997          155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITSSA  233 (496)
Q Consensus       155 ~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~~~~~~~~  233 (496)
                      ..++++.|++|.|||+.++            +.+..+.....  +.+++|+|+|++| ++++.++.|++||+.++..   
T Consensus         4 ~yV~~~~~~~v~v~D~~t~------------~~~~~i~~g~~--p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~---   66 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSN------------KVTATIPVGSN--PMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---   66 (301)
T ss_dssp             EEEEETTTTEEEEEETTTT------------EEEEEEECSSS--EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---
T ss_pred             EEEEECCCCEEEEEECCCC------------eEEEEEECCCC--ceEEEEeCCCCEEEEEECCCCEEEEEECCCCce---
Confidence            3457788999999999988            45556655433  5799999999977 5777899999999986533   


Q ss_pred             CCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc
Q 010997          234 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS  313 (496)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  313 (496)
                                                           +..+..+. .+..+.|++++..+++++..++.+.+|+..+++ 
T Consensus        67 -------------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  107 (301)
T d1l0qa2          67 -------------------------------------IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-  107 (301)
T ss_dssp             -------------------------------------EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-
T ss_pred             -------------------------------------eeeeeccc-cccccccccccccccccccccceeeecccccce-
Confidence                                                 24444444 468899999997778888899999999998876 


Q ss_pred             cceeeeccCCCCeEEEEecCCCCcE-EEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997          314 PVIKVEKAHDADLHCVDWNPLDDNL-ILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       314 ~~~~~~~~~~~~v~~i~~sp~~~~~-l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~  392 (496)
                       ..... .+...+.+++|+| ++.. ++++..++.+.+|+..+      ...+..+.. ...+..++++|++..+++++.
T Consensus       108 -~~~~~-~~~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  177 (301)
T d1l0qa2         108 -VAGTV-KTGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVT------KAVINTVSV-GRSPKGIAVTPDGTKVYVANF  177 (301)
T ss_dssp             -EEEEE-ECSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTT------TEEEEEEEC-CSSEEEEEECTTSSEEEEEET
T ss_pred             -eeeec-cccccceEEEeec-CCCeeeeeeccccceeeeeccc------cceeeeccc-CCCceEEEeeccccceeeecc
Confidence             34444 4556788999999 6655 46677788999999998      566666654 456789999999998776666


Q ss_pred             CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCc
Q 010997          393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIY  472 (496)
Q Consensus       393 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~  472 (496)
                      .++.+.+|+....               ....... +...+..++|++++..+++++.     ++.++.|++||+.    
T Consensus       178 ~~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~-----~~~~~~v~v~D~~----  232 (301)
T d1l0qa2         178 DSMSISVIDTVTN---------------SVIDTVK-VEAAPSGIAVNPEGTKAYVTNV-----DKYFNTVSMIDTG----  232 (301)
T ss_dssp             TTTEEEEEETTTT---------------EEEEEEE-CSSEEEEEEECTTSSEEEEEEE-----CSSCCEEEEEETT----
T ss_pred             cccccccccccce---------------eeeeccc-ccCCcceeeccccccccccccc-----cceeeeeeeeecC----
Confidence            6677888887663               2333333 3345778999999988776553     2346899999998    


Q ss_pred             CCchHHHHHHHhccceEEEeccCC
Q 010997          473 RPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       473 ~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                        +++.+..+..+ ..+.+++|+|
T Consensus       233 --t~~~~~~~~~~-~~~~~va~sp  253 (301)
T d1l0qa2         233 --TNKITARIPVG-PDPAGIAVTP  253 (301)
T ss_dssp             --TTEEEEEEECC-SSEEEEEECT
T ss_pred             --CCeEEEEEcCC-CCEEEEEEeC
Confidence              55555555544 4468899987

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=7.6e-19  Score=170.35  Aligned_cols=193  Identities=8%  Similarity=0.015  Sum_probs=148.1

Q ss_pred             cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCcccccc
Q 010997          154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSA  233 (496)
Q Consensus       154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~  233 (496)
                      -++++.+.+|+|.|||..++            +.+..+..|.  .+..++|+|||++|++++.|++|++||+.++.....
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~------------~v~~~~~~g~--~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~   98 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTY------------EIKTVLDTGY--AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV   98 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTC------------CEEEEEECSS--CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred             EEEEEEcCCCEEEEEECCCC------------cEEEEEeCCC--CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEE
Confidence            34689999999999999998            6777888775  479999999999999999999999999976432111


Q ss_pred             CCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc
Q 010997          234 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS  313 (496)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  313 (496)
                                                         ..+....+|.+.+.+..|+|||..++++++.++.|++||..+++ 
T Consensus        99 -----------------------------------~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-  142 (432)
T d1qksa2          99 -----------------------------------AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-  142 (432)
T ss_dssp             -----------------------------------EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-
T ss_pred             -----------------------------------EEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc-
Confidence                                               01122335666777788899996567889999999999999887 


Q ss_pred             cceeeec-----------cCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCc--eEeccCCCCEEEEE
Q 010997          314 PVIKVEK-----------AHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPI--NKFEGHSAAVLCVQ  379 (496)
Q Consensus       314 ~~~~~~~-----------~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~--~~~~~h~~~i~~l~  379 (496)
                       ......           .+......+.++| ++. ++++...++.|.+||...      ....  ..+ .+...+..++
T Consensus       143 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~~~vs~~~~~~i~~~d~~~------~~~~~~~~i-~~g~~~~~~~  213 (432)
T d1qksa2         143 -PKKIQSTRGMTYDEQEYHPEPRVAAILASH-YRPEFIVNVKETGKILLVDYTD------LNNLKTTEI-SAERFLHDGG  213 (432)
T ss_dssp             -EEEEEECCEECTTTCCEESCCCEEEEEECS-SSSEEEEEETTTTEEEEEETTC------SSEEEEEEE-ECCSSEEEEE
T ss_pred             -ceeeeccCCccccceeccCCCceeEEEECC-CCCEEEEEEccCCeEEEEEccC------CCcceEEEE-cccCccccce
Confidence             333322           2456677889999 555 456778889999999887      3333  333 3556789999


Q ss_pred             EcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          380 WSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       380 ~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      |+|+|+++++++..++.+.++|....
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             ECCCCCEEEEeccccceEEEeecccc
Confidence            99999988877777889999999874

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=1e-19  Score=169.95  Aligned_cols=243  Identities=13%  Similarity=0.120  Sum_probs=162.9

Q ss_pred             cEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC-CCcceeeeecCCCCce-EEecCCCcEEEEecCCcccc
Q 010997          154 KIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ-DNAEFALAMCPTEPYV-LSGGKDKSVVLWSIQDHITS  231 (496)
Q Consensus       154 ~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~-~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd~~~~~~~  231 (496)
                      +++++++.|++|+|||+.+.            +.+..+..+. ...+.+++|+|||++| ++++.++.|.+||+.+++..
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~   69 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE
T ss_pred             eEEEEEcCCCEEEEEECCCC------------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence            58999999999999999988            5556665542 2346799999999976 57788999999999876442


Q ss_pred             ccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc------------C
Q 010997          232 SATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG------------D  299 (496)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~------------~  299 (496)
                      .....                                   .....+...+..++|+|++ ..++++.            .
T Consensus        70 ~~~~~-----------------------------------~~~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~  113 (337)
T d1pbyb_          70 GRIDL-----------------------------------STPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             EEEEC-----------------------------------CBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEEC
T ss_pred             EEEec-----------------------------------CCCcccccceeeEEEcCCC-cEEEEeecCCcceeeecccc
Confidence            21111                                   0000112345578999998 5555554            4


Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC---------------CC---
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN---------------GV---  361 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~---------------~~---  361 (496)
                      +..+.+||..+..  ..... .+...+..++|+| ++.++++++.+  +.+||.......               ..   
T Consensus       114 ~~~~~~~d~~~~~--~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (337)
T d1pbyb_         114 PTRVALYDAETLS--RRKAF-EAPRQITMLAWAR-DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA  187 (337)
T ss_dssp             CCEEEEEETTTTE--EEEEE-ECCSSCCCEEECT-TSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred             ccceeeccccCCe--EEEec-cccCCceEEEEcC-CCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcce
Confidence            6788999998876  44444 4556788999999 89988888654  677887642100               00   


Q ss_pred             -----------------------------------------CC-CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEE
Q 010997          362 -----------------------------------------GS-PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNI  399 (496)
Q Consensus       362 -----------------------------------------~~-~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~i  399 (496)
                                                               +. ....+..+...+..+.++|++.. ++++  ++.|++
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~i~v  264 (337)
T d1pbyb_         188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLES  264 (337)
T ss_dssp             CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE-EEEE--ESEEEE
T ss_pred             eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceE-EEEc--cccEEE
Confidence                                                     00 00112234455667778888774 3333  588999


Q ss_pred             EECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHH
Q 010997          400 WDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVL  479 (496)
Q Consensus       400 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~  479 (496)
                      ||+.+.               ..+... .+...+.+++|+|+|.+++        +|+.||+|+|||+.      +.+.+
T Consensus       265 ~d~~~~---------------~~~~~~-~~~~~~~~~~~s~dG~~l~--------v~~~~~~i~v~D~~------t~~~v  314 (337)
T d1pbyb_         265 FDLEKN---------------ASIKRV-PLPHSYYSVNVSTDGSTVW--------LGGALGDLAAYDAE------TLEKK  314 (337)
T ss_dssp             EETTTT---------------EEEEEE-ECSSCCCEEEECTTSCEEE--------EESBSSEEEEEETT------TCCEE
T ss_pred             EECCCC---------------cEEEEE-cCCCCEEEEEECCCCCEEE--------EEeCCCcEEEEECC------CCcEE
Confidence            999884               333333 3556789999999999877        34446999999998      45555


Q ss_pred             HHHH
Q 010997          480 AELE  483 (496)
Q Consensus       480 ~~l~  483 (496)
                      .+++
T Consensus       315 ~~i~  318 (337)
T d1pbyb_         315 GQVD  318 (337)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=4e-19  Score=166.50  Aligned_cols=258  Identities=9%  Similarity=0.023  Sum_probs=162.1

Q ss_pred             EEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEecCCCcEEEEe
Q 010997          146 IRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGGKDKSVVLWS  224 (496)
Q Consensus       146 l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~~Dg~i~iwd  224 (496)
                      ++|++ ++++|++++.+++|.|||+.++            +.+.++..+....+.+++|+|||++| ++++.++.|.+||
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~------------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d   68 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASD------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID   68 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTT------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCC------------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEe
Confidence            46788 8899999999999999999988            66666664433346899999999976 5677899999999


Q ss_pred             cCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEc------
Q 010997          225 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVG------  298 (496)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~------  298 (496)
                      +.++.........                                  .....+...+..++|+|+|. ++++++      
T Consensus        69 ~~t~~~~~~~~~~----------------------------------~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~  113 (346)
T d1jmxb_          69 LDTCKNTFHANLS----------------------------------SVPGEVGRSMYSFAISPDGK-EVYATVNPTQRL  113 (346)
T ss_dssp             TTTTEEEEEEESC----------------------------------CSTTEEEECSSCEEECTTSS-EEEEEEEEEEEC
T ss_pred             CccCeeeeeeccc----------------------------------ccccccCCceEEEEEecCCC-EEEEEecCCcce
Confidence            9876443211110                                  00001122355788888884 444433      


Q ss_pred             ------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC-------------
Q 010997          299 ------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN-------------  359 (496)
Q Consensus       299 ------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~-------------  359 (496)
                            .++.+.+||..++..............+..+.+++ ++.+++++   +.+.+||+.+....             
T Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (346)
T d1jmxb_         114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD-DGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGY  189 (346)
T ss_dssp             SSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT-TSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTB
T ss_pred             eeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC-CCEEEEeC---CcceEEEccCCCEEEEEecCCCccceE
Confidence                  46778888887765221111112233444555555 44444432   33555554431100             


Q ss_pred             --CC----------------------------------------------CC-CceEeccCCCCEEEEEEcCCCCCEEEE
Q 010997          360 --GV----------------------------------------------GS-PINKFEGHSAAVLCVQWSPDKSSVFGS  390 (496)
Q Consensus       360 --~~----------------------------------------------~~-~~~~~~~h~~~i~~l~~sp~~~~llas  390 (496)
                        ..                                              +. ....+..|...+..+.+++++.+++ .
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  268 (346)
T d1jmxb_         190 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI-Y  268 (346)
T ss_dssp             CCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEE-E
T ss_pred             EeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEE-E
Confidence              00                                              11 1112234566778888999888754 4


Q ss_pred             EeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          391 SAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       391 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      +. ++.|.+||+...               +++... .+...+.+++|+|++.+++        +|+.||.|+|||+.  
T Consensus       269 ~~-~~~v~v~d~~~~---------------~~~~~~-~~~~~~~~va~s~DG~~l~--------v~~~d~~v~v~D~~--  321 (346)
T d1jmxb_         269 GV-LNRLAKYDLKQR---------------KLIKAA-NLDHTYYCVAFDKKGDKLY--------LGGTFNDLAVFNPD--  321 (346)
T ss_dssp             EE-ESEEEEEETTTT---------------EEEEEE-ECSSCCCEEEECSSSSCEE--------EESBSSEEEEEETT--
T ss_pred             ec-CCeEEEEECCCC---------------cEEEEE-cCCCCEEEEEEcCCCCEEE--------EEeCCCcEEEEECc--
Confidence            44 467999999874               333333 2345699999999999887        44556999999998  


Q ss_pred             CcCCchHHHHHHHhccc
Q 010997          471 IYRPQDEVLAELEKFKA  487 (496)
Q Consensus       471 ~~~~~~~~~~~l~~h~~  487 (496)
                          +.+.+.+++.+.+
T Consensus       322 ----t~~~i~~i~~p~g  334 (346)
T d1jmxb_         322 ----TLEKVKNIKLPGG  334 (346)
T ss_dssp             ----TTEEEEEEECSSS
T ss_pred             ----cCCEEEEEECCCC
Confidence                6676666664443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.76  E-value=7.9e-17  Score=152.80  Aligned_cols=302  Identities=8%  Similarity=-0.054  Sum_probs=183.4

Q ss_pred             ecCCCceeEEEecCCCCcEEEEE-----eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          137 IIHPGEVNRIRELPQNTKIVATH-----TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      -.+.+++..++++| +++.++..     +..+.|.+||..++            +.+..+.++..   ..++|+|||++|
T Consensus        17 ~~~~~p~~~~a~sp-dg~~~~~~~~~~~~~~~~v~v~D~~tg------------~~~~~~~~~~~---~~~a~SpDG~~l   80 (373)
T d2madh_          17 GAADGPTNDEAPGA-DGRRSYINLPAHHSAIIQQWVLDAGSG------------SILGHVNGGFL---PNPVAAHSGSEF   80 (373)
T ss_pred             ccCCCCccccccCC-CCCEEEEEcccccCCCceEEEEECCCC------------CEEEEEeCCCC---ccEEEcCCCCEE
Confidence            46888999999999 66665543     23457999999888            55666666654   379999999998


Q ss_pred             EEec----------CCCcEEEEecCCccccccCCccccc--cCCCCCceeccCCC---------CCCCCCCCCCCCCcCC
Q 010997          212 LSGG----------KDKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPK---------PGDGNDKAADGPSVGP  270 (496)
Q Consensus       212 ~sg~----------~Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~  270 (496)
                      ++++          .++.|.+||..+++...........  ........+.+...         .......+++..... 
T Consensus        81 ~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-  159 (373)
T d2madh_          81 ALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-  159 (373)
T ss_pred             EEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe-
Confidence            8764          4688999999987653322211100  00000000011011         011112222222211 


Q ss_pred             eeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeecc------CCCCeEEEEecCCCCcEEEEEcC
Q 010997          271 RGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKA------HDADLHCVDWNPLDDNLILTGSA  344 (496)
Q Consensus       271 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~i~~sp~~~~~l~sgs~  344 (496)
                         ...+.....++.++|++...+++.+.|+.+.+||.....  .......      .......+.+++ + ..++..+.
T Consensus       160 ---~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~  232 (373)
T d2madh_         160 ---DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGA--AGAGLVGAMLTAAQNLLTQPAQANK-S-GRIVWPVY  232 (373)
T ss_pred             ---EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCce--eeEEEeeeccccCccceeeeEEECC-C-ceEEEecC
Confidence               223444567889999997788999999999999998776  2222211      122234455555 4 44556668


Q ss_pred             CCcEEEEeCCCCCCCCCCCCceEeccC----------CCCEEEEEEcCCCCCEE---------EEEeCCCcEEEEECCCC
Q 010997          345 DNSVRMFDRRNLTSNGVGSPINKFEGH----------SAAVLCVQWSPDKSSVF---------GSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       345 dg~i~iwd~~~~~~~~~~~~~~~~~~h----------~~~i~~l~~sp~~~~ll---------as~~~dg~i~iwd~~~~  405 (496)
                      ++.+.+|+.....    ...+..+..+          ......++++|++..++         ++...++.|.+||+...
T Consensus       233 ~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~  308 (373)
T d2madh_         233 SGKILQADISAAG----ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             CceEEEEEcCCCe----EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC
Confidence            8999999988632    1112222222          12334456666655432         34555678899998774


Q ss_pred             CcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhc
Q 010997          406 GKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKF  485 (496)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h  485 (496)
                                     ..+.. ..+...+..++|+|+|..+++.      +++.|++|+|||+.      +++.++++.++
T Consensus       309 ---------------~~~~~-~~~~~~~~~~a~spDG~~~l~v------t~~~d~~v~v~D~~------tg~~~~~~~~~  360 (373)
T d2madh_         309 ---------------QTSSQ-ISLGHDVDAISVAQDGGPDLYA------LSAGTEVLHIYDAG------AGDQDQSTVEL  360 (373)
T ss_pred             ---------------cEEEE-ecCCCCeeEEEECCCCCEEEEE------EeCCCCeEEEEECC------CCCEEEEECCC
Confidence                           22222 2355678999999999875432      34446999999999      78888888877


Q ss_pred             cceEEEecc
Q 010997          486 KAHVISCTS  494 (496)
Q Consensus       486 ~~~v~~~~~  494 (496)
                      ......|+.
T Consensus       361 g~~P~~l~~  369 (373)
T d2madh_         361 GSGPQVLSV  369 (373)
T ss_pred             CCCCcEEEE
Confidence            655555543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.9e-16  Score=147.37  Aligned_cols=248  Identities=8%  Similarity=0.116  Sum_probs=161.7

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-EecCCCcEEEEecCCcccccc
Q 010997          155 IVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGKDKSVVLWSIQDHITSSA  233 (496)
Q Consensus       155 ~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg~~Dg~i~iwd~~~~~~~~~  233 (496)
                      ++++++.|++|+||++......         +. .....|.+ .+.+|+|+|||++|+ ++..|+.|++|++........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l---------~~-~~~~~~~~-~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~   74 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGAL---------TL-TQVVDVPG-QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT   74 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCE---------EE-EEEEECSS-CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCe---------EE-EEEEcCCC-CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence            5678889999999999765110         11 12224555 589999999999885 455689999999875322100


Q ss_pred             CCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCc
Q 010997          234 TDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTS  313 (496)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  313 (496)
                                                           ......+...+..++|+|++..+++++..++.|.+|+......
T Consensus        75 -------------------------------------~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~  117 (333)
T d1ri6a_          75 -------------------------------------FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP  117 (333)
T ss_dssp             -------------------------------------EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred             -------------------------------------EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccc
Confidence                                                 0111234455778999999954444445688999999877653


Q ss_pred             cceeeeccCCCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEe
Q 010997          314 PVIKVEKAHDADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSA  392 (496)
Q Consensus       314 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~  392 (496)
                      ........+...+.++.++| +++++++++ .+..|.+|+.........................++|++++..++.+..
T Consensus       118 ~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~  196 (333)
T d1ri6a_         118 VGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE  196 (333)
T ss_dssp             EEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             eecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc
Confidence            33344456777889999999 777766665 4567999998763210000000111234456789999999998776777


Q ss_pred             CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe------cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEee
Q 010997          393 EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH------AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWR  466 (496)
Q Consensus       393 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~  466 (496)
                      ..+...+|++.......           ......      .........+++++++.+++++...+       +.+.+|+
T Consensus       197 ~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~-------~~~~~~~  258 (333)
T d1ri6a_         197 LNSSVDVWELKDPHGNI-----------ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-------SLITVFS  258 (333)
T ss_dssp             TTTEEEEEESSCTTSCC-----------EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-------TEEEEEE
T ss_pred             ccCceEEEeecccccce-----------eeeeeeeeeecCCCccccceeEEEecccCceeeecccC-------CeEEEEE
Confidence            77888999876532111           111111      11233566788999999888766554       8999999


Q ss_pred             cCC
Q 010997          467 MSD  469 (496)
Q Consensus       467 ~~~  469 (496)
                      +..
T Consensus       259 ~~~  261 (333)
T d1ri6a_         259 VSE  261 (333)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            873

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.8e-15  Score=140.58  Aligned_cols=238  Identities=15%  Similarity=0.063  Sum_probs=139.6

Q ss_pred             cCCCceeEEEecCCCCcEE-EEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC----CcceeeeecCCCCceE
Q 010997          138 IHPGEVNRIRELPQNTKIV-ATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD----NAEFALAMCPTEPYVL  212 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~l-at~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~----~~v~~l~~~p~~~~l~  212 (496)
                      .+...+..++|+| +++++ ++++.++.|.+||+.++            +....+..+..    ..+..++|+|++++++
T Consensus        31 ~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~------------~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~   97 (337)
T d1pbyb_          31 DAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTG------------ETLGRIDLSTPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             TCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTC------------CEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred             CCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCC------------cEEEEEecCCCcccccceeeEEEcCCCcEEE
Confidence            3456788999999 76665 67788999999999988            44444444322    1356899999999888


Q ss_pred             EecC------------CCcEEEEecCCccccccCCccc---cccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          213 SGGK------------DKSVVLWSIQDHITSSATDPAT---AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       213 sg~~------------Dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      ++..            ++.+.+||..+...........   ..........+...    ......++.........+..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~~~~~d~~~~~~~~~~~~~  173 (337)
T d1pbyb_          98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL----GRDLHVMDPEAGTLVEDKPIQ  173 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE----SSSEEEEETTTTEEEEEECST
T ss_pred             EeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEE----cCCcceeeeecCcEEEEeecC
Confidence            7763            5678888877654321111000   00000000000000    011122222222222222111


Q ss_pred             CCceeEEEEccCCC-----------------------ceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC
Q 010997          278 EDTVEDVTFCPSSA-----------------------QEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL  334 (496)
Q Consensus       278 ~~~v~~l~~~~~~~-----------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~  334 (496)
                      .. .....+.|++.                       ..+..++.++.+.+||...+.. .......+...+.+++++| 
T Consensus       174 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  250 (337)
T d1pbyb_         174 SW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-AMREVRIMDVFYFSTAVNP-  250 (337)
T ss_dssp             TT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-EEEEEEECSSCEEEEEECT-
T ss_pred             Cc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE-EEEEecCCCcceEEEEecc-
Confidence            10 00001111110                       1111223344566666666552 1223345677788889999 


Q ss_pred             CCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          335 DDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       335 ~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ++.+++.+  ++.|++||+.+      +..+..+. +...+.+++|+|+|.+| ++++.|+.|+|||+.+.
T Consensus       251 ~~~~~~~~--~~~i~v~d~~~------~~~~~~~~-~~~~~~~~~~s~dG~~l-~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         251 AKTRAFGA--YNVLESFDLEK------NASIKRVP-LPHSYYSVNVSTDGSTV-WLGGALGDLAAYDAETL  311 (337)
T ss_dssp             TSSEEEEE--ESEEEEEETTT------TEEEEEEE-CSSCCCEEEECTTSCEE-EEESBSSEEEEEETTTC
T ss_pred             cceEEEEc--cccEEEEECCC------CcEEEEEc-CCCCEEEEEECCCCCEE-EEEeCCCcEEEEECCCC
Confidence            78877765  58899999998      67777765 56778999999999965 57888999999999884

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=5.9e-16  Score=145.47  Aligned_cols=294  Identities=9%  Similarity=0.045  Sum_probs=175.6

Q ss_pred             eEEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccceEEEecCCCceeEEEecCCCCcEEEEE----
Q 010997           84 RQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKHKTIIHPGEVNRIRELPQNTKIVATH----  159 (496)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~~p~~~~~lat~----  159 (496)
                      ..++|+.....+...+.+.|++...-                      +.+..+ +.+.+..++|+| ++++|++.    
T Consensus        13 g~~~~v~~~~~~~~~~~v~v~D~~tg----------------------~~~~~~-~~g~~~~~a~Sp-Dg~~l~v~~~~~   68 (355)
T d2bbkh_          13 ARRVYVNDPAHFAAVTQQFVIDGEAG----------------------RVIGMI-DGGFLPNPVVAD-DGSFIAHASTVF   68 (355)
T ss_dssp             TTEEEEEECGGGCSSEEEEEEETTTT----------------------EEEEEE-EECSSCEEEECT-TSSCEEEEEEEE
T ss_pred             CCEEEEEecccCCCcCeEEEEECCCC----------------------cEEEEE-ECCCCCceEEcC-CCCEEEEEeCCC
Confidence            35788877666666778888764211                      111111 223455799999 77766654    


Q ss_pred             ------eCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC------CcceeeeecCCCCceEEe--cCCCcEEEEec
Q 010997          160 ------TDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD------NAEFALAMCPTEPYVLSG--GKDKSVVLWSI  225 (496)
Q Consensus       160 ------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~------~~v~~l~~~p~~~~l~sg--~~Dg~i~iwd~  225 (496)
                            ..|+.|++||+.++            ++...+..+..      .....++|+|++++++.+  +.+..+.+|+.
T Consensus        69 ~~~~~g~~d~~v~v~D~~t~------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~  136 (355)
T d2bbkh_          69 SRIARGERTDYVEVFDPVTL------------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL  136 (355)
T ss_dssp             EETTEEEEEEEEEEECTTTC------------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred             ccccccCCCCEEEEEECCCC------------CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeec
Confidence                  34789999999988            33333332221      124578999999977665  45678999998


Q ss_pred             CCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEE
Q 010997          226 QDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLIL  305 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~i  305 (496)
                      .++........                               ..  ............+.+++++..+++....++.+.+
T Consensus       137 ~~~~~~~~~~~-------------------------------~~--~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~  183 (355)
T d2bbkh_         137 EGKAFKRMLDV-------------------------------PD--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI  183 (355)
T ss_dssp             TTTEEEEEEEC-------------------------------CS--EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CCCcEeeEEec-------------------------------CC--cceEeecCCcceEEEcCCCCEEEEEecCCCeEEE
Confidence            76543211000                               00  0000001223345566666444444555555666


Q ss_pred             EEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccC----------CCCE
Q 010997          306 WDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGH----------SAAV  375 (496)
Q Consensus       306 wd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h----------~~~i  375 (496)
                      ++.....       ..+...+....+.+ .+..++.++.++.+.+|++....    ...+.....+          ....
T Consensus       184 ~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~  251 (355)
T d2bbkh_         184 THTEVFH-------PEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGD----AKFLPAVEALTEAERADGWRPGGW  251 (355)
T ss_dssp             EECCCCS-------CTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSS----CEECCCEESSCHHHHHTTEEECSS
T ss_pred             Eeccccc-------ceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCc----EEEEeccCCcccceEeeeeeccce
Confidence            5544433       12334455567777 77888899999999999998732    1111222211          1233


Q ss_pred             EEEEEcCCCCCEEEEEeCC---------CcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCc-E
Q 010997          376 LCVQWSPDKSSVFGSSAED---------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPW-T  445 (496)
Q Consensus       376 ~~l~~sp~~~~llas~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~-l  445 (496)
                      ..++++|++..++++....         ..|.+||+.+.               +.+..+. +...+.+++|+|++.. +
T Consensus       252 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~---------------~~~~~~~-~~~~~~~~a~spDG~~~l  315 (355)
T d2bbkh_         252 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG---------------ERLAKFE-MGHEIDSINVSQDEKPLL  315 (355)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC---------------CEEEEEE-EEEEECEEEECCSSSCEE
T ss_pred             EEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCC---------------cEEEEec-CCCCEEEEEEcCCCCeEE
Confidence            4588999998766544322         36999999874               2222222 2345889999999986 4


Q ss_pred             EEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccc
Q 010997          446 VVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  487 (496)
Q Consensus       446 ~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~  487 (496)
                      ++++       +.|+.|+|||+.      +++.++++.++..
T Consensus       316 ~v~~-------~~d~~i~v~D~~------tg~~~~~i~~~G~  344 (355)
T d2bbkh_         316 YALS-------TGDKTLYIHDAE------SGEELRSVNQLGH  344 (355)
T ss_dssp             EEEE-------TTTTEEEEEETT------TCCEEEEECCCCS
T ss_pred             EEEE-------CCCCEEEEEECC------CCCEEEEEeCcCC
Confidence            5543       345999999998      6777777765533

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.62  E-value=5.2e-14  Score=130.99  Aligned_cols=239  Identities=11%  Similarity=0.048  Sum_probs=145.3

Q ss_pred             ecCCCceeEEEecCCCCcE-EEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC-----CcceeeeecCCCCc
Q 010997          137 IIHPGEVNRIRELPQNTKI-VATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD-----NAEFALAMCPTEPY  210 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~-lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~~v~~l~~~p~~~~  210 (496)
                      +.|...+.+++|+| ++++ +++++.++.|++||+.+..            ....+.....     ..+..++|+|+|++
T Consensus        36 ~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~------------~~~~~~~~~~~~~~~~~~~~v~~s~DG~~  102 (346)
T d1jmxb_          36 MPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCK------------NTFHANLSSVPGEVGRSMYSFAISPDGKE  102 (346)
T ss_dssp             CSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTE------------EEEEEESCCSTTEEEECSSCEEECTTSSE
T ss_pred             cCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCe------------eeeeecccccccccCCceEEEEEecCCCE
Confidence            45677889999999 6655 5677789999999998872            2222222111     12568899999998


Q ss_pred             eEEec------------CCCcEEEEecCCccccccCCccc------cccCCCCCceeccCCCCCCCCCCCCCCCCcCCee
Q 010997          211 VLSGG------------KDKSVVLWSIQDHITSSATDPAT------AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRG  272 (496)
Q Consensus       211 l~sg~------------~Dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (496)
                      |++++            .++.+.+|+..++..........      .........+...     ......++......+.
T Consensus       103 l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  177 (346)
T d1jmxb_         103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA-----GPDIYKMDVKTGKYTV  177 (346)
T ss_dssp             EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE-----SSSEEEECTTTCCEEE
T ss_pred             EEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe-----CCcceEEEccCCCEEE
Confidence            87664            47889999988764432211100      0000000001100     1112222333333333


Q ss_pred             eeecCCCceeEEEEccCC-------------------------CceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeE
Q 010997          273 IYNGHEDTVEDVTFCPSS-------------------------AQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLH  327 (496)
Q Consensus       273 ~~~~h~~~v~~l~~~~~~-------------------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  327 (496)
                      .+..+. ....+.++|++                         ...++++..++.+.+||+.++.. .......+...+.
T Consensus       178 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  255 (346)
T d1jmxb_         178 ALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT-HTQEFADLTELYF  255 (346)
T ss_dssp             EECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE-EEEEEEECSSCEE
T ss_pred             EEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCce-EEEEeecccceeE
Confidence            222211 11222222222                         13344555667788888887762 2334456888899


Q ss_pred             EEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          328 CVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       328 ~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      .+.+++ ++.+++.+. ++.|.+||+.+      ++.+..+. +...+.+++|+|||+++ ++++.|+.|+|||+.+.
T Consensus       256 ~~~~~~-~~~~~~~~~-~~~v~v~d~~~------~~~~~~~~-~~~~~~~va~s~DG~~l-~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         256 TGLRSP-KDPNQIYGV-LNRLAKYDLKQ------RKLIKAAN-LDHTYYCVAFDKKGDKL-YLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             EEEECS-SCTTEEEEE-ESEEEEEETTT------TEEEEEEE-CSSCCCEEEECSSSSCE-EEESBSSEEEEEETTTT
T ss_pred             EEEEeC-CCCEEEEec-CCeEEEEECCC------CcEEEEEc-CCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECccC
Confidence            999999 666666654 45799999998      66777665 45678999999999976 57888999999999885

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.57  E-value=3.3e-12  Score=120.30  Aligned_cols=259  Identities=10%  Similarity=-0.043  Sum_probs=147.2

Q ss_pred             eEEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCC------cceeeeecCC
Q 010997          144 NRIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDN------AEFALAMCPT  207 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~------~v~~l~~~p~  207 (496)
                      ..++|+| ++++|++++          .++.|.|||..++.            +...+..+...      ....+.|+++
T Consensus        69 ~~~a~Sp-DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~------------~~~~~~~~~~~~~~~~~~~~~~~~s~d  135 (373)
T d2madh_          69 PNPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL------------PIADIELPDAPRFDVGPYSWMNANTPN  135 (373)
T ss_pred             ccEEEcC-CCCEEEEEeecCCcccccccceEEEEEECCCCc------------EEEEEecCCcceeEeccCCCcEEEEeC
Confidence            3789999 888888764          35789999999883            33333333221      1245677888


Q ss_pred             CCceEEe--cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC------CC
Q 010997          208 EPYVLSG--GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH------ED  279 (496)
Q Consensus       208 ~~~l~sg--~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~  279 (496)
                      ++.++..  ..++.+.+|+.......................... .....++.+..++............+      ..
T Consensus       136 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (373)
T d2madh_         136 NADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTF-YLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNL  214 (373)
T ss_pred             CCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEE-EEEcCCCeEEEEEcCCceeeEEEeeeccccCccc
Confidence            7755444  345677888776543322111111000000000000 00112233333443333333332221      12


Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCC----------CCeEEEEecCC---------CCcEEE
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHD----------ADLHCVDWNPL---------DDNLIL  340 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~v~~i~~sp~---------~~~~l~  340 (496)
                      ....+.+.+++  .++..+.++.+.+|+..............+.          .....++++|.         .+..++
T Consensus       215 ~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  292 (373)
T d2madh_         215 LTQPAQANKSG--RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             eeeeEEECCCc--eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEE
Confidence            22334445444  5677778999999998876521111111111          12233444441         233445


Q ss_pred             EEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCC-EEEEEeCCCcEEEEECCCCCcccCCCCCCCCCC
Q 010997          341 TGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYP  419 (496)
Q Consensus       341 sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~-llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  419 (496)
                      +...++.|.+||..+      ++.+..+. +...+..++|+|||+. ++++++.|+.|+|||+.+.              
T Consensus       293 ~~~~~~~v~~~d~~t------~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg--------------  351 (373)
T d2madh_         293 LHAAAKEVTSVTGLV------GQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG--------------  351 (373)
T ss_pred             eecCCCeEEEEECCC------CcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC--------------
Confidence            566778899999988      67777765 6678899999999986 4578889999999999985              


Q ss_pred             CeeEEEecCCCCCcceEEecC
Q 010997          420 AGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       420 ~~~~~~~~~h~~~V~~~~~~p  440 (496)
                       +.+..+.++....+.+++.+
T Consensus       352 -~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         352 -DQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             -CEEEEECCCCCCCcEEEEec
Confidence             45666666666666666543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.44  E-value=1.4e-12  Score=123.02  Aligned_cols=251  Identities=10%  Similarity=-0.027  Sum_probs=150.6

Q ss_pred             eEEEecCCCCcEEEEEe----------CCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC------CcceeeeecCC
Q 010997          144 NRIRELPQNTKIVATHT----------DSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD------NAEFALAMCPT  207 (496)
Q Consensus       144 ~~l~~~p~~~~~lat~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~------~~v~~l~~~p~  207 (496)
                      ..++|+| +++.|++.+          .|+.|.+||..+.            ++...+..+..      .....++|+||
T Consensus        68 ~~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~------------~~~~~i~~p~~~~~~~g~~p~~~a~SpD  134 (368)
T d1mdah_          68 SLAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTF------------LPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             CEEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTC------------CEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             CcceECC-CCCEEEEEcccCccccccccCCeEEEEECCCC------------cEeeeecCCccceecccCCccceEECCC
Confidence            3588999 777777654          3678999999987            44444433321      12357899999


Q ss_pred             CCceEEec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEE
Q 010997          208 EPYVLSGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTF  286 (496)
Q Consensus       208 ~~~l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  286 (496)
                      |++|+.+. .++.|.+||+.+....                                        ..+..+...    .+
T Consensus       135 Gk~l~va~~~~~~v~~~d~~~~~~~----------------------------------------~~~~~~~~~----~~  170 (368)
T d1mdah_         135 SACLLFFLFGSSAAAGLSVPGASDD----------------------------------------QLTKSASCF----HI  170 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEEE----------------------------------------EEEECSSCC----CC
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcEe----------------------------------------EEeeccCcc----eE
Confidence            99888775 5799999999865432                                        222222111    12


Q ss_pred             ccCCCceEEEEcCCCeEEEEEccCCCcccee----eeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC
Q 010997          287 CPSSAQEFCSVGDDSCLILWDARVGTSPVIK----VEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG  362 (496)
Q Consensus       287 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  362 (496)
                      .|.+...++..+.||.+.++++.........    ....+...+..+.+.+ ++..+.+.  .+.+.++++....    .
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~--~~~v~~~~~~~~~----~  243 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWAV--ASSILQGDIPAAG----A  243 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT-TTEEEECB--SSCCEEEECCSSC----C
T ss_pred             ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc-CcEEEEec--CCCEEEEeecCCc----e
Confidence            2333456777778888888887665422211    1223444556677777 56555443  4556666655411    0


Q ss_pred             CCceEecc----------CCCCEEEEEEcCCCCCEEEEEeCC--------CcEEEEECCCCCcccCCCCCCCCCCCeeEE
Q 010997          363 SPINKFEG----------HSAAVLCVQWSPDKSSVFGSSAED--------GLLNIWDYEKVGKKVEQGPRTTNYPAGLFF  424 (496)
Q Consensus       363 ~~~~~~~~----------h~~~i~~l~~sp~~~~llas~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  424 (496)
                      ..+.....          .......++++|++..+++....+        ..|.+||..+..               .+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~---------------~~~  308 (368)
T d1mdah_         244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------------TSG  308 (368)
T ss_dssp             EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------------EEE
T ss_pred             EEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc---------------EeE
Confidence            11111111          112234578899988766554332        358899998742               222


Q ss_pred             EecCCCCCcceEEecCCCCc-EEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccc
Q 010997          425 QHAGHRDKVVDFHWNASDPW-TVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKA  487 (496)
Q Consensus       425 ~~~~h~~~V~~~~~~p~~~~-l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~  487 (496)
                      .+ .+...+.+++|+|+++. ++++.+.       |+.|+|||..      +++.+++++....
T Consensus       309 ~~-~~~~~~~~~a~spDG~~~ly~s~~~-------~~~v~v~D~~------tgk~~~~i~~g~~  358 (368)
T d1mdah_         309 PI-SNGHDSDAIIAAQDGASDNYANSAG-------TEVLDIYDAA------SDQDQSSVELDKG  358 (368)
T ss_dssp             CC-EEEEEECEEEECCSSSCEEEEEETT-------TTEEEEEESS------SCEEEEECCCCSC
T ss_pred             Ee-cCCCceeEEEECCCCCEEEEEEeCC-------CCeEEEEECC------CCCEEEEEECCCC
Confidence            22 12346889999999875 5565444       4999999998      6776666664443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.42  E-value=1.3e-10  Score=108.80  Aligned_cols=305  Identities=11%  Similarity=0.047  Sum_probs=168.8

Q ss_pred             EEEEEEeecCCCCCCeEEEEEEeccCcchhhhccccccCcccCCcccce--EEEecCCCceeEEEecCCCCcEEEEEeCC
Q 010997           85 QRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKK--HKTIIHPGEVNRIRELPQNTKIVATHTDS  162 (496)
Q Consensus        85 ~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~l~~~p~~~~~lat~~~d  162 (496)
                      |.||+||.+.+   ..|++...+.                +..  .+..  ...+.....+.-|+|+| ++++|.+... 
T Consensus         3 ~~l~vGtyt~~---~~i~~~~fd~----------------~~~--~l~~~~~~~~~~~~~~s~la~s~-d~~~ly~~~~-   59 (365)
T d1jofa_           3 HHLMIGTWTPP---GAIFTVQFDD----------------EKL--TCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAM-   59 (365)
T ss_dssp             EEEEEEESSSS---CEEEEEEEET----------------TTT--EEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEB-
T ss_pred             eEEEEEeecCC---CCEEEEEEcC----------------CCC--eEEEeeeeeccCCCCCCEEEEcC-CCCEEEEEeC-
Confidence            78999999853   3466655432                211  1222  22345566678899999 7777766654 


Q ss_pred             CcEEEEeCCCCCCccccCCCCCCCCceEEecC-CCCcceeeeecCCCCc--eEEec-CCCcEEEEecCCccccccCCccc
Q 010997          163 PDVLIWDVEAQPNRHAVLGATNSRPDLILTGH-QDNAEFALAMCPTEPY--VLSGG-KDKSVVLWSIQDHITSSATDPAT  238 (496)
Q Consensus       163 g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h-~~~~v~~l~~~p~~~~--l~sg~-~Dg~i~iwd~~~~~~~~~~~~~~  238 (496)
                      +.+..|.+.....            ......+ .+.....++++++++.  ++++. ..++|..+.+...........  
T Consensus        60 ~~~~~~~i~~~~~------------~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~--  125 (365)
T d1jofa_          60 KKWSSFAVKSPTE------------IVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFS--  125 (365)
T ss_dssp             TEEEEEEEEETTE------------EEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEE--
T ss_pred             CcEEEEEEeCCCC------------eEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEe--
Confidence            5788887765411            1111111 1113468899999883  44433 346666665432110000000  


Q ss_pred             cccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee-eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccc-e
Q 010997          239 AKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI-YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPV-I  316 (496)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~  316 (496)
                      .   ..                   .......... -......+.++.|+|++..++++......|.+|+........ .
T Consensus       126 ~---~~-------------------~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~  183 (365)
T d1jofa_         126 V---SE-------------------TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELV  183 (365)
T ss_dssp             E---CT-------------------TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             e---ee-------------------cceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeec
Confidence            0   00                   0000000011 111223467999999995555555556789998865433111 1


Q ss_pred             ee--eccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCCCCCCCceEec-----------------cCCCCEE
Q 010997          317 KV--EKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSNGVGSPINKFE-----------------GHSAAVL  376 (496)
Q Consensus       317 ~~--~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------~h~~~i~  376 (496)
                      ..  ..........++|+| ++.++ ++.-.+++|.+||+....    ...+....                 .+.....
T Consensus       184 ~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (365)
T d1jofa_         184 GSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPAT----HMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD  258 (365)
T ss_dssp             EEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTT----CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred             cceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecCCC----ceEEEEeeeeccccccccccccccccccCCcc
Confidence            11  112356789999999 77766 556678999999987632    11111110                 1222456


Q ss_pred             EEEEcCCCCCEEEEEeCCCc-----EEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC-CCCcEEEEec
Q 010997          377 CVQWSPDKSSVFGSSAEDGL-----LNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA-SDPWTVVSVS  450 (496)
Q Consensus       377 ~l~~sp~~~~llas~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p-~~~~l~~s~s  450 (496)
                      .+.++|+|++|+++...+..     |..|++...+....         ...+...........+++++| +|.+|+++..
T Consensus       259 ~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~---------~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK---------QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE---------EEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             ceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceee---------EeEeeEEEcCCCCccEEEecCCCCCEEEEEeC
Confidence            89999999988766543333     77777765321110         011122222334567899998 6787877554


Q ss_pred             CCCCCCCCCCeEEEeecCC
Q 010997          451 DDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       451 ~d~~sgg~Dg~i~iw~~~~  469 (496)
                      .       ++.|.+|++++
T Consensus       330 ~-------s~~v~v~~~~~  341 (365)
T d1jofa_         330 Q-------EGWLEIYRWKD  341 (365)
T ss_dssp             S-------SCEEEEEEEET
T ss_pred             C-------CCeEEEEEEeC
Confidence            4       49999999874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.37  E-value=2.2e-11  Score=118.58  Aligned_cols=77  Identities=6%  Similarity=0.021  Sum_probs=60.8

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeC---------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTD---------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTE  208 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~  208 (496)
                      .|...|.++.|+| |+++||.++.         ++.+.|||+.++.             ...+..|.. .+....|+|||
T Consensus        59 ~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-------------~~~l~~~~~-~~~~~~~SPDG  123 (470)
T d2bgra1          59 EFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-------------LITEERIPN-NTQWVTWSPVG  123 (470)
T ss_dssp             TSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-------------ECCSSCCCT-TEEEEEECSST
T ss_pred             hccCccceeEECC-CCCEEEEEECCcceeeeccCceEEEEECCCCc-------------ccccccCCc-cccccccccCc
Confidence            5677899999999 8888887743         5688999999872             123455665 57899999999


Q ss_pred             CceEEecCCCcEEEEecCCccc
Q 010997          209 PYVLSGGKDKSVVLWSIQDHIT  230 (496)
Q Consensus       209 ~~l~sg~~Dg~i~iwd~~~~~~  230 (496)
                      ++||.. .++.+.+|+..++..
T Consensus       124 ~~ia~~-~~~~l~~~~~~~g~~  144 (470)
T d2bgra1         124 HKLAYV-WNNDIYVKIEPNLPS  144 (470)
T ss_dssp             TCEEEE-ETTEEEEESSTTSCC
T ss_pred             ceeeEe-ecccceEEECCCCce
Confidence            999986 478999999887654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.35  E-value=1.1e-11  Score=116.71  Aligned_cols=250  Identities=8%  Similarity=-0.001  Sum_probs=148.3

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCcccc--CCCCC----------------CCCceEEecCCCCcceeeeecCCCCceEE-ec
Q 010997          155 IVATHTDSPDVLIWDVEAQPNRHAV--LGATN----------------SRPDLILTGHQDNAEFALAMCPTEPYVLS-GG  215 (496)
Q Consensus       155 ~lat~~~dg~i~iwd~~~~~~~~~~--~~~~~----------------~~~~~~l~~h~~~~v~~l~~~p~~~~l~s-g~  215 (496)
                      .+++|+.+|.|+||++.+++....+  +....                .........|.. .......+|||++|+. ..
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP-~~s~t~gtpDGr~lfV~d~   91 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHP-HISMTDGRYDGKYLFINDK   91 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCC-EEEEETTEEEEEEEEEEET
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCC-CcceecccCCCCEEEEEcC
Confidence            4678889999999999876432210  00000                000111122333 3456667899998754 45


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCCceE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQEF  294 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l  294 (496)
                      .+++|.++|+++.+..                                        ..+. .+...+..++|+|++...+
T Consensus        92 ~~~rVavIDl~t~k~~----------------------------------------~ii~iP~g~gphgi~~spdg~t~Y  131 (441)
T d1qnia2          92 ANTRVARIRLDIMKTD----------------------------------------KITHIPNVQAIHGLRLQKVPKTNY  131 (441)
T ss_dssp             TTTEEEEEETTTTEEE----------------------------------------EEEECTTCCCEEEEEECCSSBCCE
T ss_pred             CCCEEEEEECCCCcEe----------------------------------------eEEecCCCCCccceEEeccCCEEE
Confidence            7889999999875432                                        2222 3456788999999985544


Q ss_pred             EEEcCCCeE------------------EEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCC-----------
Q 010997          295 CSVGDDSCL------------------ILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSAD-----------  345 (496)
Q Consensus       295 ~s~~~dg~i------------------~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~d-----------  345 (496)
                      +++..+..+                  ..+|..+.+  ...... -...+..++|+| ++.++++++.+           
T Consensus       132 V~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~--v~~qI~-v~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t  207 (441)
T d1qnia2         132 VFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD--VAWQVI-VDGNLDNTDADY-TGKYATSTCYNSERAVDLAGTM  207 (441)
T ss_dssp             EEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS--EEEEEE-ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHT
T ss_pred             EEeccCCcccccCcccccccccccceEEeecCccce--eeEEEe-cCCCccceEECC-CCCEEEEEecCCCceEEEeccC
Confidence            444433333                  447776655  333322 234577899999 88877766543           


Q ss_pred             ------------------------------CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCC
Q 010997          346 ------------------------------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDG  395 (496)
Q Consensus       346 ------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg  395 (496)
                                                    +.+.+++...      ...+..+..... ...+.++|+|+++++++..++
T Consensus       208 ~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~------~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~  280 (441)
T d1qnia2         208 RNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE------SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSP  280 (441)
T ss_dssp             CSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS------CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSS
T ss_pred             cceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC------CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCC
Confidence                                          2333333332      344555555444 468999999999999999999


Q ss_pred             cEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          396 LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       396 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +|.|||+.+..+......    .+...+.......-.....+|.+++ +.+.|       .+.|..|..|++.
T Consensus       281 tvsv~d~~k~~~~~~~~~----~~~~~~~~~~~~glgplh~~fd~~g-~~yts-------~~~ds~v~kw~~~  341 (441)
T d1qnia2         281 TVSVIAIDKLDDLFEDKI----ELRDTIVAEPELGLGPLHTTFDGRG-NAYTT-------LFIDSQVCKWNIA  341 (441)
T ss_dssp             BEEEEEGGGHHHHTTTSS----CGGGGEEECCBCCSCEEEEEECSSS-EEEEE-------ETTTTEEEEEEHH
T ss_pred             cEEEEEeehhhhHhhccC----CcceEEEeecccccCcccceecCCc-eEEEc-------ccccceEEEeccc
Confidence            999999987432211110    1111111111122234456898866 45554       4456999999985

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.32  E-value=1.4e-11  Score=114.86  Aligned_cols=118  Identities=16%  Similarity=0.168  Sum_probs=83.8

Q ss_pred             CceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccC----------CCCeEEEEecCCCCcEEEEEcCC---
Q 010997          279 DTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH----------DADLHCVDWNPLDDNLILTGSAD---  345 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~i~~sp~~~~~l~sgs~d---  345 (496)
                      ..+....+.+++ ..++.++.++.+.+|++..+..........+          ......+++++ ++..++....+   
T Consensus       195 ~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~  272 (355)
T d2bbkh_         195 FLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDE  272 (355)
T ss_dssp             CBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCT
T ss_pred             ceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCc
Confidence            344555677766 5788889999999999988763222221111          12334578888 77766655433   


Q ss_pred             -------CcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCC-EEEEEeCCCcEEEEECCCC
Q 010997          346 -------NSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSS-VFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       346 -------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~-llas~~~dg~i~iwd~~~~  405 (496)
                             ..|.+||..+      ++.+..+. +...+.+++|+|+|+. ++++++.|+.|+|||+.++
T Consensus       273 ~~~~~~~~~v~v~d~~t------~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg  333 (355)
T d2bbkh_         273 WRHKTASRFVVVLDAKT------GERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG  333 (355)
T ss_dssp             TCTTSCEEEEEEEETTT------CCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             eeecCCCCeEEEEeCCC------CcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence                   3699999998      67777775 3456889999999985 5677788999999999885

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.7e-09  Score=96.33  Aligned_cols=243  Identities=12%  Similarity=0.062  Sum_probs=148.6

Q ss_pred             cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC-CC--cEEEEecCCccccccCCccccc
Q 010997          164 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK-DK--SVVLWSIQDHITSSATDPATAK  240 (496)
Q Consensus       164 ~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~-Dg--~i~iwd~~~~~~~~~~~~~~~~  240 (496)
                      .|.|-|....            .......+. . .+..-+|||||+.||-... .+  .+.+.+.....           
T Consensus        20 ~l~i~d~dG~------------~~~~l~~~~-~-~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-----------   74 (269)
T d2hqsa1          20 ELRVSDYDGY------------NQFVVHRSP-Q-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-----------   74 (269)
T ss_dssp             EEEEEETTSC------------SCEEEEEES-S-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-----------
T ss_pred             EEEEEcCCCC------------CcEEEecCC-C-ceeeeEECCCCCEEEEEEeeccCcceeeeecccCc-----------
Confidence            5777777654            333333443 3 4678999999999885543 33  34444443221           


Q ss_pred             cCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec
Q 010997          241 SAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK  320 (496)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  320 (496)
                                                    ...+..+........|+|++..+++....++...++........ .....
T Consensus        75 ------------------------------~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~  123 (269)
T d2hqsa1          75 ------------------------------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVT  123 (269)
T ss_dssp             ------------------------------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEECC
T ss_pred             ------------------------------eeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccc-ceeee
Confidence                                          24455677788899999999655555555555555444433321 22222


Q ss_pred             cCCCCeEEEEecCCCCcEEEEEcCCCcE--EEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997          321 AHDADLHCVDWNPLDDNLILTGSADNSV--RMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN  398 (496)
Q Consensus       321 ~~~~~v~~i~~sp~~~~~l~sgs~dg~i--~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~  398 (496)
                      ..........+++.....+++...+|..  .+.++..       .....+..+........|+|++..++.+....+...
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~  196 (269)
T d2hqsa1         124 DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-------GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH  196 (269)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-------SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred             eccccccccccccccccceecccccCCceEeeeeccc-------ccceeeecccccccccccccccceeEEEeecCCcee
Confidence            3444445556777344555666666654  4445543       344455556777888999999998776766667666


Q ss_pred             EEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHH
Q 010997          399 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEV  478 (496)
Q Consensus       399 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~  478 (496)
                      +|.+.....              .. ....+........|+|+|.+++.+....     ....|+++++..       ..
T Consensus       197 i~~~~~~~~--------------~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~-----~~~~l~~~~~dg-------~~  249 (269)
T d2hqsa1         197 IAKQDLATG--------------GV-QVLSSTFLDETPSLAPNGTMVIYSSSQG-----MGSVLNLVSTDG-------RF  249 (269)
T ss_dssp             EEEEETTTC--------------CE-EECCCSSSCEEEEECTTSSEEEEEEEET-----TEEEEEEEETTS-------CC
T ss_pred             eeEeecccc--------------cc-eEeecCccccceEECCCCCEEEEEEcCC-----CCcEEEEEECCC-------CC
Confidence            666554211              11 1223344567789999999887665432     245788898872       23


Q ss_pred             HHHHHhccceEEEeccCC
Q 010997          479 LAELEKFKAHVISCTSKP  496 (496)
Q Consensus       479 ~~~l~~h~~~v~~~~~sP  496 (496)
                      ...|....+.+...+|||
T Consensus       250 ~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         250 KARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EEECCCSSSEEEEEEECC
T ss_pred             EEEEeCCCCcEEeEEeCC
Confidence            345666677888999998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.17  E-value=3.1e-10  Score=106.49  Aligned_cols=291  Identities=7%  Similarity=-0.130  Sum_probs=160.5

Q ss_pred             cCCCceeEEEecCCCCcE---EEEEeCCCc--EEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          138 IHPGEVNRIRELPQNTKI---VATHTDSPD--VLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~---lat~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      .+.+....++..+ +++.   .++...+|.  |.+||..+.            +....+.++..   ..++|+|+|++|+
T Consensus        17 ~~~g~~~~~a~~~-~~~~~~v~~~~~~~g~~~~~~~d~~~~------------~~~~~~~~~~~---~~~a~spDg~~i~   80 (368)
T d1mdah_          17 ASDGSSCDHGPGA-ISRRSHITLPAYFAGTTENWVSCAGCG------------VTLGHSLGAFL---SLAVAGHSGSDFA   80 (368)
T ss_dssp             CCCCCCBCCCCCC-CTTEEEEEECTTTCSSEEEEEEETTTT------------EEEEEEEECTT---CEEEECTTSSCEE
T ss_pred             ccCCCccccccCC-CCcceeEEeeccCCCcceEEEEeCCCC------------cEEEEEeCCCC---CcceECCCCCEEE
Confidence            3555666666666 4443   223444554  666687777            55556666654   3689999999887


Q ss_pred             Ee----------cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCcee
Q 010997          213 SG----------GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE  282 (496)
Q Consensus       213 sg----------~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  282 (496)
                      ..          +.|+.|.+||..+.+........                             .    ...........
T Consensus        81 ~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p-----------------------------~----~~~~~~g~~p~  127 (368)
T d1mdah_          81 LASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP-----------------------------D----APRFSVGPRVH  127 (368)
T ss_dssp             EEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET-----------------------------T----SCSCCBSCCTT
T ss_pred             EEcccCccccccccCCeEEEEECCCCcEeeeecCC-----------------------------c----cceecccCCcc
Confidence            64          45788999999875432211100                             0    00000111234


Q ss_pred             EEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCC
Q 010997          283 DVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVG  362 (496)
Q Consensus       283 ~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  362 (496)
                      .++|+|+|..++++...++.+.+||+.+.+  .......+....    +.|.....++..+.||.+.++++.........
T Consensus       128 ~~a~SpDGk~l~va~~~~~~v~~~d~~~~~--~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~  201 (368)
T d1mdah_         128 IIGNCASSACLLFFLFGSSAAAGLSVPGAS--DDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             SEEECTTSSCEEEEECSSSCEEEEEETTTE--EEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCc--EeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeee
Confidence            689999995555555678999999999877  344443333221    22224567777888999988887763211000


Q ss_pred             CCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCC
Q 010997          363 SPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASD  442 (496)
Q Consensus       363 ~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~  442 (496)
                      .....+..+...+..+.+.+++.. +.  ..++.+.++++.............. ......  ..........+++++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~g~~-~~--~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~g~~~~a~~~~~  275 (368)
T d1mdah_         202 VGAQCTGAQNCSSQAAQANYPGML-VW--AVASSILQGDIPAAGATMKAAIDGN-ESGRKA--DNFRSAGFQMVAKLKNT  275 (368)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEE-EE--CBSSCCEEEECCSSCCEEECCCCSS-CTHHHH--TTEEECSSSCEEEETTT
T ss_pred             eecccccccccceeecccccCcEE-EE--ecCCCEEEEeecCCceEEEeecccc-cceeee--eeecCCCceeEEEcCCC
Confidence            011122334445567778888753 32  3356677777765321111000000 000000  00001223457888888


Q ss_pred             CcEEEEecCCC-CCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEeccCC
Q 010997          443 PWTVVSVSDDC-DSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTSKP  496 (496)
Q Consensus       443 ~~l~~s~s~d~-~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~sP  496 (496)
                      ..+++...++. ......+.|.+||..      +++.+.++. +...+.+++|+|
T Consensus       276 ~~~~v~~~~~~~~~~~~~~~v~v~D~~------t~~~~~~~~-~~~~~~~~a~sp  323 (368)
T d1mdah_         276 DGIMILTVEHSRSCLAAAENTSSVTAS------VGQTSGPIS-NGHDSDAIIAAQ  323 (368)
T ss_dssp             TEEEEEEEECSSCTTSCEEEEEEEESS------SCCEEECCE-EEEEECEEEECC
T ss_pred             CEEEEEecCCCceeecCCceEEEEECC------CCcEeEEec-CCCceeEEEECC
Confidence            87766544331 122233578999998      555555555 345688888887

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.13  E-value=2.3e-08  Score=90.64  Aligned_cols=244  Identities=8%  Similarity=0.013  Sum_probs=158.0

Q ss_pred             ceEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce
Q 010997          132 KKHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV  211 (496)
Q Consensus       132 ~~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l  211 (496)
                      +.+..+.-...+..+++.| +++++++...+++|..|+....              ...+..... .+.+++|.++|+++
T Consensus        19 ~v~~~~p~~~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~--------------~~~~~~~~~-~~~gla~~~dG~l~   82 (302)
T d2p4oa1          19 KIITSFPVNTFLENLASAP-DGTIFVTNHEVGEIVSITPDGN--------------QQIHATVEG-KVSGLAFTSNGDLV   82 (302)
T ss_dssp             EEEEEECTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCC--------------EEEEEECSS-EEEEEEECTTSCEE
T ss_pred             cEEEECCCCCCcCCEEECC-CCCEEEEeCCCCEEEEEeCCCC--------------EEEEEcCCC-CcceEEEcCCCCeE
Confidence            3445555445688899999 8899999999999988886543              122333333 57899999999988


Q ss_pred             EEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          212 LSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       212 ~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ++...++.+..|+........                                    .. ..........+++.+.+++ 
T Consensus        83 v~~~~~~~~~~~~~~~~~~~~------------------------------------~~-~~~~~~~~~~n~i~~~~~g-  124 (302)
T d2p4oa1          83 ATGWNADSIPVVSLVKSDGTV------------------------------------ET-LLTLPDAIFLNGITPLSDT-  124 (302)
T ss_dssp             EEEECTTSCEEEEEECTTSCE------------------------------------EE-EEECTTCSCEEEEEESSSS-
T ss_pred             EEecCCceEEEEEecccccce------------------------------------ee-ccccCCccccceeEEccCC-
Confidence            888888888888865321100                                    00 0111234567899999998 


Q ss_pred             ceEEEEcCCCeEEEEEccCCCccceee--------eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997          292 QEFCSVGDDSCLILWDARVGTSPVIKV--------EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       292 ~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~  363 (496)
                      +++++-+.++.+..+|...+.......        ........+.+.++.  +.++++.+..+.|..+++......   .
T Consensus       125 ~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~---~  199 (302)
T d2p4oa1         125 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKP---G  199 (302)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCB---C
T ss_pred             CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEEeccccccccc---c
Confidence            788888888999988887654111110        011223456777764  567778888899999988763210   1


Q ss_pred             CceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEe---cC
Q 010997          364 PINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHW---NA  440 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~---~p  440 (496)
                      ....+ ........++|.++|. |+++...++.|..++....              ...+..........++++|   ++
T Consensus       200 ~~~~~-~~~~~pdgia~d~dG~-l~va~~~~~~V~~i~p~G~--------------~~~~~~~~~~~~~pt~vafg~~~~  263 (302)
T d2p4oa1         200 EPEIF-VEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS--------------TTIIAQAEQGVIGSTAVAFGQTEG  263 (302)
T ss_dssp             CCEEE-EESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC--------------EEEEECGGGTCTTEEEEEECCSTT
T ss_pred             ccccc-cCCCCCcceEECCCCC-EEEEEcCCCcEEEECCCCC--------------EEEEEecCCCCCCceEEEEcCCCC
Confidence            11111 1234456899999997 6777777889998876542              0122222223345789999   66


Q ss_pred             CCCcEEEEec
Q 010997          441 SDPWTVVSVS  450 (496)
Q Consensus       441 ~~~~l~~s~s  450 (496)
                      +++.|+++.+
T Consensus       264 D~~~Lyvtt~  273 (302)
T d2p4oa1         264 DCTAIYVVTN  273 (302)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCCEEEEECC
Confidence            7777777643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.02  E-value=1.5e-07  Score=82.95  Aligned_cols=238  Identities=9%  Similarity=-0.027  Sum_probs=146.8

Q ss_pred             CceeEEEecCCCCcEEEE-EeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCc
Q 010997          141 GEVNRIRELPQNTKIVAT-HTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKS  219 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~  219 (496)
                      -.-..|++.+ ++++.++ .+..+.|..++......           ......+..  ...+++++++++++++....+.
T Consensus        14 ~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~--~p~gvav~~~g~i~v~d~~~~~   79 (260)
T d1rwia_          14 LSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGT-----------TVLPFNGLY--QPQGLAVDGAGTVYVTDFNNRV   79 (260)
T ss_dssp             CCEEEEEECT-TCCEEEEECSSSCEEEEEC----CE-----------EECCCCSCC--SCCCEEECTTCCEEEEETTTEE
T ss_pred             CCCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceE-----------EEeccCCcc--CceEEEEcCCCCEEEeeeeece
Confidence            3457889998 6776554 45567777777655411           111122222  2368899999988877777777


Q ss_pred             EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC
Q 010997          220 VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD  299 (496)
Q Consensus       220 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  299 (496)
                      +++++-.+....                                        .. ........++++.+++ +++++-..
T Consensus        80 i~~~~~~~~~~~----------------------------------------~~-~~~~~~p~~iavd~~g-~i~v~d~~  117 (260)
T d1rwia_          80 VTLAAGSNNQTV----------------------------------------LP-FDGLNYPEGLAVDTQG-AVYVADRG  117 (260)
T ss_dssp             EEECTTCSCCEE----------------------------------------CC-CCSCCSEEEEEECTTC-CEEEEEGG
T ss_pred             eeeeeeccceee----------------------------------------ee-eeeeeecccccccccc-eeEeeccc
Confidence            766654332110                                        00 1112456789999988 67777777


Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEE
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCV  378 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l  378 (496)
                      +..+..++.....  ..............++++| +++++++...++.|..+|...       .....+ ...-.....|
T Consensus       118 ~~~~~~~~~~~~~--~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~-------~~~~~~~~~~~~~p~gi  187 (260)
T d1rwia_         118 NNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAES-------NNQVVLPFTDITAPWGI  187 (260)
T ss_dssp             GTEEEEECTTCSS--CEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTT-------CCEEECCCSSCCSEEEE
T ss_pred             cccccccccccce--eeeeeecccCCcceeeecC-CCCEeeecccccccccccccc-------ceeeeeeccccCCCccc
Confidence            7778888765544  2222222334567899999 888888888889999999775       223333 2344567899


Q ss_pred             EEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCC
Q 010997          379 QWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGG  458 (496)
Q Consensus       379 ~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~  458 (496)
                      ++.++|. |+++....+.|..++......              .+. ....-....+|++++++. ++++-..+      
T Consensus       188 ~~d~~g~-l~vsd~~~~~i~~~~~~~~~~--------------~~~-~~~~~~~P~~i~~d~~g~-l~vad~~~------  244 (260)
T d1rwia_         188 AVDEAGT-VYVTEHNTNQVVKLLAGSTTS--------------TVL-PFTGLNTPLAVAVDSDRT-VYVADRGN------  244 (260)
T ss_dssp             EECTTCC-EEEEETTTTEEEEECTTCSCC--------------EEC-CCCSCCCEEEEEECTTCC-EEEEEGGG------
T ss_pred             eeeeeee-eeeeecCCCEEEEEeCCCCeE--------------EEE-ccCCCCCeEEEEEeCCCC-EEEEECCC------
Confidence            9999987 777777788888887654211              111 111223567899999875 55554333      


Q ss_pred             CCeEEEeecC
Q 010997          459 GGTLQIWRMS  468 (496)
Q Consensus       459 Dg~i~iw~~~  468 (496)
                       ++|+.++..
T Consensus       245 -~rI~~i~~~  253 (260)
T d1rwia_         245 -DRVVKLTSL  253 (260)
T ss_dssp             -TEEEEECCC
T ss_pred             -CEEEEEeCC
Confidence             666666554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.01  E-value=2.6e-10  Score=107.22  Aligned_cols=138  Identities=12%  Similarity=0.130  Sum_probs=84.4

Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEE-EEEcCCCcEEEEeCCCCCCC--CCCCCceEeccC---C
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLI-LTGSADNSVRMFDRRNLTSN--GVGSPINKFEGH---S  372 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~dg~i~iwd~~~~~~~--~~~~~~~~~~~h---~  372 (496)
                      .++.+.+++.....  ........ .....+.++| ++.++ +++..+++|.+||+.++...  ........+.++   .
T Consensus       236 ~~~v~vvd~~~~~~--v~~~IPvg-ksPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~g  311 (441)
T d1qnia2         236 DSKVPVVDGRGESE--FTRYIPVP-KNPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELG  311 (441)
T ss_dssp             TCCCCEEECSSSCS--SEEEECCB-SSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCC
T ss_pred             CCCcEEEEcccCCc--eEEEEeCC-CCccCceECC-CCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccc
Confidence            35566666554433  34444333 3457899999 78765 66788999999998763210  000111111111   2


Q ss_pred             CCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe-----cCCCCCcceEEecCCCCcEE
Q 010997          373 AAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH-----AGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       373 ~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~~~~~p~~~~l~  446 (496)
                      -.....+|.++|. .+.+...|..|..|++....+....+     .....+-.+     .||...+.+..++|+|+||+
T Consensus       312 lgplh~~fd~~g~-~yts~~~ds~v~kw~~~~~~~~~~~~-----~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~  384 (441)
T d1qnia2         312 LGPLHTTFDGRGN-AYTTLFIDSQVCKWNIADAIKHYNGD-----RVNYIRQKLDVQYQPGHNHASLTESRDADGKWLV  384 (441)
T ss_dssp             SCEEEEEECSSSE-EEEEETTTTEEEEEEHHHHHHHHTTC-----CCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEE
T ss_pred             cCcccceecCCce-EEEcccccceEEEeccchhhhhhccC-----CCceeEeccccccCCCCCccccccccCCCCcEEE
Confidence            2345678999986 67888899999999986421111110     011122222     58999999999999999876

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=7.6e-07  Score=78.52  Aligned_cols=225  Identities=12%  Similarity=0.040  Sum_probs=131.1

Q ss_pred             EecCCCceeEEEecCCCCcEEEEEeCC-C--cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE
Q 010997          136 TIIHPGEVNRIRELPQNTKIVATHTDS-P--DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL  212 (496)
Q Consensus       136 ~~~h~~~V~~l~~~p~~~~~lat~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~  212 (496)
                      +..+.+.+..-+||| ||+.||-.... +  .+.+.+....             ....+..+.. ......|+|+|..|+
T Consensus        34 l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANG-------------AVRQVASFPR-HNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTC-------------CEEEEECCSS-CEEEEEECTTSSEEE
T ss_pred             EecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccC-------------ceeEEeeeec-ccccceecCCCCeee
Confidence            345667788999999 77777755443 3  3555565544             1223444444 567899999999777


Q ss_pred             Eec-CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCC
Q 010997          213 SGG-KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSA  291 (496)
Q Consensus       213 sg~-~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~  291 (496)
                      ... .++...++.......                                       ................+++++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~  139 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASG---------------------------------------QIRQVTDGRSNNTEPTWFPDSQ  139 (269)
T ss_dssp             EEECTTSSCEEEEEETTTC---------------------------------------CEEECCCCSSCEEEEEECTTSS
T ss_pred             EeeecCCccceeecccccc---------------------------------------cceeeeeccccccccccccccc
Confidence            544 333333333221110                                       0011222333444556777775


Q ss_pred             ceEEEEcCCCeEEEE--EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcC-CCcEEEEeCCCCCCCCCCCCceEe
Q 010997          292 QEFCSVGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSA-DNSVRMFDRRNLTSNGVGSPINKF  368 (496)
Q Consensus       292 ~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-dg~i~iwd~~~~~~~~~~~~~~~~  368 (496)
                      ..+++...+|...+|  ++....   ...............|+| ++..++..+. .+...+|....      .......
T Consensus       140 ~~~~~~~~~g~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~------~~~~~~~  209 (269)
T d2hqsa1         140 NLAFTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDL------ATGGVQV  209 (269)
T ss_dssp             EEEEEECTTSSCEEEEEETTSSC---CEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEET------TTCCEEE
T ss_pred             cceecccccCCceEeeeeccccc---ceeeeccccccccccccc-ccceeEEEeecCCceeeeEeec------ccccceE
Confidence            666666666655555  444433   223334566677889999 7776666544 44555554443      1122334


Q ss_pred             ccCCCCEEEEEEcCCCCCEEEEEeC--CCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecC
Q 010997          369 EGHSAAVLCVQWSPDKSSVFGSSAE--DGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNA  440 (496)
Q Consensus       369 ~~h~~~i~~l~~sp~~~~llas~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p  440 (496)
                      ..+........|||||+.|+.++..  ...|.++++...                ....+....+.+...+|+|
T Consensus       210 ~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~----------------~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         210 LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR----------------FKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC----------------CEEECCCSSSEEEEEEECC
T ss_pred             eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC----------------CEEEEeCCCCcEEeEEeCC
Confidence            4456667888999999987655543  346788888763                1223444556778889998

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.95  E-value=1.5e-09  Score=105.30  Aligned_cols=153  Identities=12%  Similarity=0.188  Sum_probs=107.4

Q ss_pred             eeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997          200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  279 (496)
Q Consensus       200 ~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  279 (496)
                      ..+.|.+++.++..  .|+.|.+||+.++........                                   ..+..|..
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~-----------------------------------~~~~~~~~   62 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLEN-----------------------------------STFDEFGH   62 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECT-----------------------------------TTTTTSSS
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEch-----------------------------------hhhhhccC
Confidence            46889999987764  478899999988754322211                                   23456777


Q ss_pred             ceeEEEEccCCCceEEEEc---------CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEE
Q 010997          280 TVEDVTFCPSSAQEFCSVG---------DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRM  350 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~i  350 (496)
                      .|.++.|+||+ ..|+.++         .++.+.+||+.+++   ...+..+...+..+.||| ++..||.. .++.+.+
T Consensus        63 ~i~~~~~SpDg-~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~---~~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~  136 (470)
T d2bgra1          63 SINDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYV  136 (470)
T ss_dssp             CCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEE
T ss_pred             ccceeEECCCC-CEEEEEECCcceeeeccCceEEEEECCCCc---ccccccCCcccccccccc-CcceeeEe-ecccceE
Confidence            89999999999 6666664         35778999999876   344567889999999999 99999986 5678999


Q ss_pred             EeCCCCCCCCCCCCceEecc------------------CCCCEEEEEEcCCCCCEEEEEeCC-CcEEEEEC
Q 010997          351 FDRRNLTSNGVGSPINKFEG------------------HSAAVLCVQWSPDKSSVFGSSAED-GLLNIWDY  402 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~~~~~------------------h~~~i~~l~~sp~~~~llas~~~d-g~i~iwd~  402 (496)
                      |+...      +........                  ..+....+.|||||++| |....| ..|..|.+
T Consensus       137 ~~~~~------g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~i-a~~~~d~~~v~~~~~  200 (470)
T d2bgra1         137 KIEPN------LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL-AYAQFNDTEVPLIEY  200 (470)
T ss_dssp             ESSTT------SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEE-EEEEEECTTCCEEEE
T ss_pred             EECCC------CceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcc-ceeEecCCcCceEEE
Confidence            99887      333322211                  12334568899999975 455433 33544443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.86  E-value=7.8e-08  Score=86.99  Aligned_cols=219  Identities=12%  Similarity=0.033  Sum_probs=142.2

Q ss_pred             cceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          198 AEFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       198 ~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      .+..+++.|+|+++++...+++|..|+.....                                          ..+...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~------------------------------------------~~~~~~   66 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ------------------------------------------QIHATV   66 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE------------------------------------------EEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE------------------------------------------EEEEcC
Confidence            36789999999999999999999888865321                                          334455


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceee-eccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCC
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKV-EKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNL  356 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~  356 (496)
                      ...+.+++|.+++ +++++...++.+..++........... ........+.+++.+ +++++++.+.++.+..+|....
T Consensus        67 ~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~  144 (302)
T d2p4oa1          67 EGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQP  144 (302)
T ss_dssp             SSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTT
T ss_pred             CCCcceEEEcCCC-CeEEEecCCceEEEEEecccccceeeccccCCccccceeEEcc-CCCEEeeccccccceeeeccCC
Confidence            6788999999999 688888888889888876654222221 123456689999999 8999999888999988887752


Q ss_pred             CCCCCCCCceE----------eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997          357 TSNGVGSPINK----------FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  426 (496)
Q Consensus       357 ~~~~~~~~~~~----------~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  426 (496)
                            .....          ..........+.++.  ..++++.+..+.|..+++...+...         ......  
T Consensus       145 ------~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~---------~~~~~~--  205 (302)
T d2p4oa1         145 ------SGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPG---------EPEIFV--  205 (302)
T ss_dssp             ------EEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBC---------CCEEEE--
T ss_pred             ------cceeEecCCccceeeccCcccccccccccC--CceeeecCCCCeEEecccccccccc---------cccccc--
Confidence                  11110          011223456676654  4577788888999988877642211         111111  


Q ss_pred             cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceEEEecc
Q 010997          427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHVISCTS  494 (496)
Q Consensus       427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v~~~~~  494 (496)
                        .......+++.++|. ++++...       ++.|..++....     ...+..+...-...++++|
T Consensus       206 --~~~~pdgia~d~dG~-l~va~~~-------~~~V~~i~p~G~-----~~~~~~~~~~~~~pt~vaf  258 (302)
T d2p4oa1         206 --EQTNIDDFAFDVEGN-LYGATHI-------YNSVVRIAPDRS-----TTIIAQAEQGVIGSTAVAF  258 (302)
T ss_dssp             --ESCCCSSEEEBTTCC-EEEECBT-------TCCEEEECTTCC-----EEEEECGGGTCTTEEEEEE
T ss_pred             --CCCCCcceEECCCCC-EEEEEcC-------CCcEEEECCCCC-----EEEEEecCCCCCCceEEEE
Confidence              123467899999886 4443332       478888877631     1122223333334567776

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.82  E-value=2.1e-06  Score=77.59  Aligned_cols=250  Identities=10%  Similarity=0.079  Sum_probs=143.7

Q ss_pred             ceeEEEecCCCCcEEEEEeC-------CCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe
Q 010997          142 EVNRIRELPQNTKIVATHTD-------SPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      ..-.++|.| +++++++...       +|.|..||..+........        ........ .-..++|.++++.|+.+
T Consensus        19 g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~--------~~~~~~~g-~P~Gl~~~~dg~~l~va   88 (314)
T d1pjxa_          19 GAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK--------PEVNGYGG-IPAGCQCDRDANQLFVA   88 (314)
T ss_dssp             TCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC--------CEETTEEC-CEEEEEECSSSSEEEEE
T ss_pred             CCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEEC--------CccccCCC-cceeEEEeCCCCEEEEE
Confidence            355678888 7777765433       4678888887762111000        00000011 23579999999887777


Q ss_pred             cCCCcEEEEecCCccccccCCccc-c-------ccCCCCCceeccCCCCCC----C-------CCCCCCCCCcCCeeeee
Q 010997          215 GKDKSVVLWSIQDHITSSATDPAT-A-------KSAGSSGSIIKQSPKPGD----G-------NDKAADGPSVGPRGIYN  275 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~  275 (496)
                      ...+.|...+.+............ .       ........+.........    .       ...++..........+.
T Consensus        89 d~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~  168 (314)
T d1pjxa_          89 DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD  168 (314)
T ss_dssp             ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE
T ss_pred             ECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEee
Confidence            767778888887653322111100 0       000111111111000000    0       00000000001111122


Q ss_pred             cCCCceeEEEEccCCC----ceEEEEcCCCeEEEEEccCCCccce----eeec-cCCCCeEEEEecCCCCcEEEEEcCCC
Q 010997          276 GHEDTVEDVTFCPSSA----QEFCSVGDDSCLILWDARVGTSPVI----KVEK-AHDADLHCVDWNPLDDNLILTGSADN  346 (496)
Q Consensus       276 ~h~~~v~~l~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~-~~~~~v~~i~~sp~~~~~l~sgs~dg  346 (496)
                      ......+.++|+|++.    .++++-+..+.|..||+........    ..+. ........+++.. ++++.++....+
T Consensus       169 ~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g  247 (314)
T d1pjxa_         169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSS  247 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTT
T ss_pred             CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCC
Confidence            2223346789998763    2566667889999999865431111    1111 1223456899998 899888888889


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcc
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK  408 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~  408 (496)
                      .|.+||...      +..+..+......+++++|.|+++.|+++.+.+|.|..+++...+.+
T Consensus       248 ~I~~~dp~~------g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~  303 (314)
T d1pjxa_         248 HIEVFGPDG------GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKK  303 (314)
T ss_dssp             EEEEECTTC------BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCC
T ss_pred             EEEEEeCCC------CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChh
Confidence            999999886      56666677666788999999999888889888999999998876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.81  E-value=1.3e-05  Score=72.56  Aligned_cols=244  Identities=9%  Similarity=0.055  Sum_probs=145.9

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCC--Cc
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKD--KS  219 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~D--g~  219 (496)
                      .+..++|.+ ++++.++-...+.|+.|+..+.            .....+..... ...+|+++++|+++++...+  ..
T Consensus        41 ~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~------------~~~~~~~~~~~-~p~gla~~~dG~l~va~~~~~~~~  106 (319)
T d2dg1a1          41 QLEGLNFDR-QGQLFLLDVFEGNIFKINPETK------------EIKRPFVSHKA-NPAAIKIHKDGRLFVCYLGDFKST  106 (319)
T ss_dssp             CEEEEEECT-TSCEEEEETTTCEEEEECTTTC------------CEEEEEECSSS-SEEEEEECTTSCEEEEECTTSSSC
T ss_pred             CcEeCEECC-CCCEEEEECCCCEEEEEECCCC------------eEEEEEeCCCC-CeeEEEECCCCCEEEEecCCCccc
Confidence            346789988 7788888888899999988765            22222333333 35799999999877665332  23


Q ss_pred             --EEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee--cCCCceeEEEEccCCCceEE
Q 010997          220 --VVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN--GHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       220 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~  295 (496)
                        |...+.......                                        ....  .-....+++.+.++| .+++
T Consensus       107 ~~i~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~nd~~~d~~G-~l~v  145 (319)
T d2dg1a1         107 GGIFAATENGDNLQ----------------------------------------DIIEDLSTAYCIDDMVFDSKG-GFYF  145 (319)
T ss_dssp             CEEEEECTTSCSCE----------------------------------------EEECSSSSCCCEEEEEECTTS-CEEE
T ss_pred             eeEEEEcCCCceee----------------------------------------eeccCCCcccCCcceeEEecc-ceee
Confidence              333333321110                                        0010  112347789999998 5665


Q ss_pred             EEcC------CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCCceE-
Q 010997          296 SVGD------DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSPINK-  367 (496)
Q Consensus       296 s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-  367 (496)
                      +...      .+.+..++.....   .......-...+.|+|+| +++ +.++-+..+.|..||+....     ..... 
T Consensus       146 td~~~~~~~~~g~v~~~~~dg~~---~~~~~~~~~~pnGia~s~-dg~~lyvad~~~~~I~~~d~~~~g-----~~~~~~  216 (319)
T d2dg1a1         146 TDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNISVANGIALST-DEKVLWVTETTANRLHRIALEDDG-----VTIQPF  216 (319)
T ss_dssp             EECCCBTTBCCEEEEEECTTSCC---EEEEEEEESSEEEEEECT-TSSEEEEEEGGGTEEEEEEECTTS-----SSEEEE
T ss_pred             cccccccccCcceeEEEecccce---eEEEeeccceeeeeeecc-ccceEEEecccCCceEEEEEcCCC-----ceeccc
Confidence            5422      1234444443322   222222334568899999 776 45666778999999987521     11111 


Q ss_pred             ------eccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe------cCCCCCcce
Q 010997          368 ------FEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH------AGHRDKVVD  435 (496)
Q Consensus       368 ------~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~V~~  435 (496)
                            ..........+++.++|. |+++....+.|.+||-..  +              ++...      .++...+++
T Consensus       217 ~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~~g~V~~~~p~G--~--------------~l~~i~~P~~~~~~~~~~~~  279 (319)
T d2dg1a1         217 GATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRG--Y--------------PIGQILIPGRDEGHMLRSTH  279 (319)
T ss_dssp             EEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTS--C--------------EEEEEECTTGGGTCSCBCCE
T ss_pred             cceeeeccCCccceeeeeEcCCCC-EEEEEcCCCEEEEECCCC--c--------------EEEEEeCCCcCCCcCceeee
Confidence                  111123367899999997 777777889999999542  2              22211      255667889


Q ss_pred             EEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          436 FHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       436 ~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ++|.+....++++.++.  .....|.|...+..
T Consensus       280 ~~~~~~~~~~~~t~~~~--~~~~~g~l~~~~~~  310 (319)
T d2dg1a1         280 PQFIPGTNQLIICSNDI--EMGGGSMLYTVNGF  310 (319)
T ss_dssp             EEECTTSCEEEEEEECG--GGTCCEEEEEEECS
T ss_pred             EEEeCCCCEEEEEcCCC--CcCCceeEEEEeCC
Confidence            99999877777766543  34444555555543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.78  E-value=8.2e-06  Score=72.27  Aligned_cols=233  Identities=12%  Similarity=0.136  Sum_probs=148.0

Q ss_pred             eeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec------CCCCcceeeeecCC-CCceE-Ee
Q 010997          143 VNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG------HQDNAEFALAMCPT-EPYVL-SG  214 (496)
Q Consensus       143 V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~------h~~~~v~~l~~~p~-~~~l~-sg  214 (496)
                      ...|++.| +++++++-..+..|++||.+..             .+..+..      ... .-..+++.++ +.+++ ..
T Consensus        25 P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~-------------~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~   89 (279)
T d1q7fa_          25 PSGVAVNA-QNDIIVADTNNHRIQIFDKEGR-------------FKFQFGECGKRDSQLL-YPNRVAVVRNSGDIIVTER   89 (279)
T ss_dssp             EEEEEECT-TCCEEEEEGGGTEEEEECTTSC-------------EEEEECCBSSSTTCBS-SEEEEEEETTTTEEEEEEC
T ss_pred             ccEEEEcC-CCCEEEEECCCCEEEEEeCCCC-------------EEEEecccCCCccccc-ccccccccccccccceecc
Confidence            57889998 7888888777889999997533             1111111      000 1133444444 33333 33


Q ss_pred             cCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeee-cCCCceeEEEEccCCCce
Q 010997          215 GKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYN-GHEDTVEDVTFCPSSAQE  293 (496)
Q Consensus       215 ~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~  293 (496)
                      +.++.|.+++......                                         ..+. ........+++.+++ .+
T Consensus        90 ~~~~~i~~~~~~g~~~-----------------------------------------~~~~~~~~~~p~~~avd~~G-~i  127 (279)
T d1q7fa_          90 SPTHQIQIYNQYGQFV-----------------------------------------RKFGATILQHPRGVTVDNKG-RI  127 (279)
T ss_dssp             GGGCEEEEECTTSCEE-----------------------------------------EEECTTTCSCEEEEEECTTS-CE
T ss_pred             CCccccccccccccce-----------------------------------------eecCCCcccccceeccccCC-cE
Confidence            4455676666542111                                         1111 223456788888888 67


Q ss_pred             EEEEcCCCeEEEEEccCCCccceeee--ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec--
Q 010997          294 FCSVGDDSCLILWDARVGTSPVIKVE--KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE--  369 (496)
Q Consensus       294 l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~--  369 (496)
                      +++....+.+.+++... +  ....+  ..+......+++.+ +++++++....+.|.+||..       +..+.++.  
T Consensus       128 ~v~~~~~~~~~~~~~~g-~--~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~-------G~~~~~~g~~  196 (279)
T d1q7fa_         128 IVVECKVMRVIIFDQNG-N--VLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYE-------GQYLRQIGGE  196 (279)
T ss_dssp             EEEETTTTEEEEECTTS-C--EEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETT-------CCEEEEESCT
T ss_pred             EEEeeccceeeEeccCC-c--eeecccccccccccceeeecc-ceeEEeeeccccceeeeecC-------Cceeeeeccc
Confidence            77777778888887543 3  23322  34567788999999 88999999999999999976       46666663  


Q ss_pred             cCCCCEEEEEEcCCCCCEEEEEe-CCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe--cCCCCCcceEEecCCCCcEE
Q 010997          370 GHSAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH--AGHRDKVVDFHWNASDPWTV  446 (496)
Q Consensus       370 ~h~~~i~~l~~sp~~~~llas~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~~~~~p~~~~l~  446 (496)
                      +.......|++.|+|. |+++-. .++.|.+|+...                .++..+  .........+++.|++. ++
T Consensus       197 g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G----------------~~~~~~~~~~~~~~p~~vav~~dG~-l~  258 (279)
T d1q7fa_         197 GITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG----------------QLISALESKVKHAQCFDVALMDDGS-VV  258 (279)
T ss_dssp             TTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS----------------CEEEEEEESSCCSCEEEEEEETTTE-EE
T ss_pred             ccccCCcccccccCCe-EEEEECCCCcEEEEECCCC----------------CEEEEEeCCCCCCCEeEEEEeCCCc-EE
Confidence            3455688999999998 665544 355799998543                222222  22233568899999875 55


Q ss_pred             EEecCCCCCCCCCCeEEEeecCC
Q 010997          447 VSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       447 ~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      ++. .       +++|++|+...
T Consensus       259 V~~-~-------n~~v~~fr~~~  273 (279)
T d1q7fa_         259 LAS-K-------DYRLYIYRYVQ  273 (279)
T ss_dssp             EEE-T-------TTEEEEEECSC
T ss_pred             EEe-C-------CCeEEEEEeee
Confidence            432 2       48999999873

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.74  E-value=6.3e-07  Score=81.47  Aligned_cols=204  Identities=8%  Similarity=0.080  Sum_probs=123.0

Q ss_pred             ceeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC
Q 010997          199 EFALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE  278 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  278 (496)
                      ..+++|.++|++.++-...++|..|+.++...                                        ...+....
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~----------------------------------------~~~~~~~~   81 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEI----------------------------------------KRPFVSHK   81 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCE----------------------------------------EEEEECSS
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeE----------------------------------------EEEEeCCC
Confidence            35789999999777777889998888764321                                        12233344


Q ss_pred             CceeEEEEccCCCceEEEEcC----CCeEEEEEccCCCccceeeec--cCCCCeEEEEecCCCCcEEEEEcCC------C
Q 010997          279 DTVEDVTFCPSSAQEFCSVGD----DSCLILWDARVGTSPVIKVEK--AHDADLHCVDWNPLDDNLILTGSAD------N  346 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs~d------g  346 (496)
                      .....++++++| .++++...    .+.+...+.....  ......  .-...++.+++.+ ++++.++....      +
T Consensus        82 ~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g  157 (319)
T d2dg1a1          82 ANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDN--LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLG  157 (319)
T ss_dssp             SSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCS--CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCE
T ss_pred             CCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCce--eeeeccCCCcccCCcceeEEe-ccceeecccccccccCcc
Confidence            567899999998 66665433    2334454544443  222221  1234578899999 88877764321      2


Q ss_pred             cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe
Q 010997          347 SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH  426 (496)
Q Consensus       347 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  426 (496)
                      .+..++...       ..+..+...-...+.++|+|+++.|+++-+..+.|..||+...+.....      .........
T Consensus       158 ~v~~~~~dg-------~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~------~~~~~~~~~  224 (319)
T d2dg1a1         158 GVYYVSPDF-------RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP------FGATIPYYF  224 (319)
T ss_dssp             EEEEECTTS-------CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE------EEEEEEEEC
T ss_pred             eeEEEeccc-------ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecc------ccceeeecc
Confidence            355555442       3344443333456889999999888878888899999998754221100      000011111


Q ss_pred             cCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          427 AGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       427 ~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .+ ....-.+++.++|.. .++...       .+.|.+|+..
T Consensus       225 ~~-~~~PdGl~vD~~G~l-~Va~~~-------~g~V~~~~p~  257 (319)
T d2dg1a1         225 TG-HEGPDSCCIDSDDNL-YVAMYG-------QGRVLVFNKR  257 (319)
T ss_dssp             CS-SSEEEEEEEBTTCCE-EEEEET-------TTEEEEECTT
T ss_pred             CC-ccceeeeeEcCCCCE-EEEEcC-------CCEEEEECCC
Confidence            11 123457899998864 444333       3899999976

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.74  E-value=1e-06  Score=77.51  Aligned_cols=196  Identities=10%  Similarity=0.025  Sum_probs=128.0

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVV  221 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~  221 (496)
                      ....+++.+ +++++++....+.+++++-....            ......+..  ...++++.++++++++-.....+.
T Consensus        58 ~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~------------~~~~~~~~~--~p~~iavd~~g~i~v~d~~~~~~~  122 (260)
T d1rwia_          58 QPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQ------------TVLPFDGLN--YPEGLAVDTQGAVYVADRGNNRVV  122 (260)
T ss_dssp             SCCCEEECT-TCCEEEEETTTEEEEECTTCSCC------------EECCCCSCC--SEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             CceEEEEcC-CCCEEEeeeeeceeeeeeeccce------------eeeeeeeee--ecccccccccceeEeecccccccc
Confidence            356788888 77888887777777766544431            111112222  357899999988777766667777


Q ss_pred             EEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCC
Q 010997          222 LWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDS  301 (496)
Q Consensus       222 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  301 (496)
                      .++........                                       . ...-.....++++.+++ +++++...++
T Consensus       123 ~~~~~~~~~~~---------------------------------------~-~~~~~~~p~~i~~~~~g-~~~v~~~~~~  161 (260)
T d1rwia_         123 KLAAGSKTQTV---------------------------------------L-PFTGLNDPDGVAVDNSG-NVYVTDTDNN  161 (260)
T ss_dssp             EECTTCSSCEE---------------------------------------C-CCCSCCSCCEEEECTTC-CEEEEEGGGT
T ss_pred             ccccccceeee---------------------------------------e-eecccCCcceeeecCCC-CEeeeccccc
Confidence            77654321100                                       0 00112334678999988 6888888889


Q ss_pred             eEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEec-cCCCCEEEEEE
Q 010997          302 CLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQW  380 (496)
Q Consensus       302 ~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~l~~  380 (496)
                      .|..+|.....  ..............|++++ +++++++....+.|..++...       .....+. ..-.....|++
T Consensus       162 ~i~~~d~~~~~--~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~-------~~~~~~~~~~~~~P~~i~~  231 (260)
T d1rwia_         162 RVVKLEAESNN--QVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGS-------TTSTVLPFTGLNTPLAVAV  231 (260)
T ss_dssp             EEEEECTTTCC--EEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTC-------SCCEECCCCSCCCEEEEEE
T ss_pred             cccccccccce--eeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCC-------CeEEEEccCCCCCeEEEEE
Confidence            99999977654  2222224456678999999 889988888889999887654       2222222 22345789999


Q ss_pred             cCCCCCEEEEEeCCCcEEEEECCC
Q 010997          381 SPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       381 sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      +++|. |+++-..+++|+.++...
T Consensus       232 d~~g~-l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         232 DSDRT-VYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CTTCC-EEEEEGGGTEEEEECCCG
T ss_pred             eCCCC-EEEEECCCCEEEEEeCCC
Confidence            99986 777766677777666543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.73  E-value=3.2e-07  Score=85.23  Aligned_cols=170  Identities=11%  Similarity=0.049  Sum_probs=105.1

Q ss_pred             ceeeeecCCCCceEEecC-CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecC
Q 010997          199 EFALAMCPTEPYVLSGGK-DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGH  277 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~-Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  277 (496)
                      +.++.|+|+|++|++++. ...|.+|+...........                                  . ......
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~----------------------------------~-~~~~~~  191 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG----------------------------------S-VDAPDP  191 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE----------------------------------E-EECSST
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc----------------------------------c-eeecCC
Confidence            679999999998877753 4578888765321100000                                  0 011123


Q ss_pred             CCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeec-----------------cCCCCeEEEEecCCCCcEEE
Q 010997          278 EDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEK-----------------AHDADLHCVDWNPLDDNLIL  340 (496)
Q Consensus       278 ~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~~v~~i~~sp~~~~~l~  340 (496)
                      ......+.|+|++..++++...+++|.+|++............                 .+......+.++| ++.+|+
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~ly  270 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMF  270 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECC-CCCEEE
Confidence            4567889999999666788888999999999766522111110                 1122356789999 888887


Q ss_pred             EEcC------CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcC-CCCCEEEEEeCCCcEEEEECCC
Q 010997          341 TGSA------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSP-DKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       341 sgs~------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ++..      .+.|..|++...........+............++++| +|++|+++...++.|.+|+++.
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            7642      23477787765210000000111112334567799998 7888887778899999999865

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.51  E-value=5.7e-06  Score=74.67  Aligned_cols=229  Identities=9%  Similarity=0.066  Sum_probs=130.7

Q ss_pred             ceeeeecCCCCceEEecC-------CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCe
Q 010997          199 EFALAMCPTEPYVLSGGK-------DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPR  271 (496)
Q Consensus       199 v~~l~~~p~~~~l~sg~~-------Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (496)
                      ..+++|.++|+++++...       +|+|..||..++.......+                                   
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~-----------------------------------   64 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP-----------------------------------   64 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC-----------------------------------
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC-----------------------------------
Confidence            467899999986665432       46788888775432111100                                   


Q ss_pred             eeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeee-ccC-CCCeEEEEecCCCCcEEEEEcC-----
Q 010997          272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE-KAH-DADLHCVDWNPLDDNLILTGSA-----  344 (496)
Q Consensus       272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~-~~~v~~i~~sp~~~~~l~sgs~-----  344 (496)
                       ......+....+.|.+++ +.++++...+.|..+|............ .+. -...+.+++.+ ++++.++-..     
T Consensus        65 -~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~  141 (314)
T d1pjxa_          65 -EVNGYGGIPAGCQCDRDA-NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAP  141 (314)
T ss_dssp             -EETTEECCEEEEEECSSS-SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTT
T ss_pred             -ccccCCCcceeEEEeCCC-CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCccc
Confidence             000111235789999998 5566666666788888765431111110 000 12367899999 7888776432     


Q ss_pred             ----------CCcEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCC----CEEEEEeCCCcEEEEECCCCCcccC
Q 010997          345 ----------DNSVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKS----SVFGSSAEDGLLNIWDYEKVGKKVE  410 (496)
Q Consensus       345 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~----~llas~~~dg~i~iwd~~~~~~~~~  410 (496)
                                .|.|..++..       +. ...+...-...+.++|+|++.    .|+++-+..+.|..||+...+....
T Consensus       142 ~~~~~~~~~~~G~v~~~~~d-------g~-~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~  213 (314)
T d1pjxa_         142 ADYTRSMQEKFGSIYCFTTD-------GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN  213 (314)
T ss_dssp             SCCCBTTSSSCEEEEEECTT-------SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred             ccccceeccCCceEEEEeec-------Cc-eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce
Confidence                      2334444332       22 222222333457899999864    4676777788999999865422110


Q ss_pred             CCCCCCCCCCeeEEEecC-CCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCCCCcCCchHHHHHHHhccceE
Q 010997          411 QGPRTTNYPAGLFFQHAG-HRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSDLIYRPQDEVLAELEKFKAHV  489 (496)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~~~~~~~~~~~~~l~~h~~~v  489 (496)
                               .+....+.+ +....-.+++..+|...++..+        .+.|.+|+..      .++.+.++.......
T Consensus       214 ---------~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~--------~g~I~~~dp~------~g~~~~~i~~p~~~~  270 (314)
T d1pjxa_         214 ---------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWG--------SSHIEVFGPD------GGQPKMRIRCPFEKP  270 (314)
T ss_dssp             ---------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEET--------TTEEEEECTT------CBSCSEEEECSSSCE
T ss_pred             ---------eeEEEEccccccccceeeEEecCCcEEEEEcC--------CCEEEEEeCC------CCEEEEEEECCCCCE
Confidence                     112222222 2223457899998865443322        2789999987      344444455555567


Q ss_pred             EEeccCC
Q 010997          490 ISCTSKP  496 (496)
Q Consensus       490 ~~~~~sP  496 (496)
                      ++++|.|
T Consensus       271 t~~afg~  277 (314)
T d1pjxa_         271 SNLHFKP  277 (314)
T ss_dssp             EEEEECT
T ss_pred             EEEEEeC
Confidence            7888865

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.45  E-value=3.2e-05  Score=68.31  Aligned_cols=199  Identities=12%  Similarity=0.166  Sum_probs=126.2

Q ss_pred             eeeeecCCCCceEEecCCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCC
Q 010997          200 FALAMCPTEPYVLSGGKDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHED  279 (496)
Q Consensus       200 ~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  279 (496)
                      ..|+++++++.+++-.....|++||.+..... .....                                  ..-.+...
T Consensus        26 ~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~-~~~~~----------------------------------~~~~~~~~   70 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF-QFGEC----------------------------------GKRDSQLL   70 (279)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTTSCEEE-EECCB----------------------------------SSSTTCBS
T ss_pred             cEEEEcCCCCEEEEECCCCEEEEEeCCCCEEE-Eeccc----------------------------------CCCccccc
Confidence            68999999998888777899999997532110 00000                                  00001112


Q ss_pred             ceeEEEEccCCCceEEE-EcCCCeEEEEEccCCCccceeee-ccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCC
Q 010997          280 TVEDVTFCPSSAQEFCS-VGDDSCLILWDARVGTSPVIKVE-KAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLT  357 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~  357 (496)
                      ....+++..+....+++ .+.++.|..++.. +.  ....+ .........+++.+ ++.++++....+.+.+++..   
T Consensus        71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~---  143 (279)
T d1q7fa_          71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQ--FVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN---  143 (279)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEECTT-SC--EEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT---
T ss_pred             ccccccccccccccceeccCCcccccccccc-cc--ceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC---
Confidence            23445555544344443 4455677777753 33  22222 23456678999998 88888888888889998865   


Q ss_pred             CCCCCCCceEe--ccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEe--cCCCCCc
Q 010997          358 SNGVGSPINKF--EGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQH--AGHRDKV  433 (496)
Q Consensus       358 ~~~~~~~~~~~--~~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V  433 (496)
                          +..+.++  ..+......+++.+++. ++++....+.|.+||...                ..+...  .++....
T Consensus       144 ----g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G----------------~~~~~~g~~g~~~~P  202 (279)
T d1q7fa_         144 ----GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEG----------------QYLRQIGGEGITNYP  202 (279)
T ss_dssp             ----SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTC----------------CEEEEESCTTTSCSE
T ss_pred             ----Cceeecccccccccccceeeecccee-EEeeeccccceeeeecCC----------------ceeeeecccccccCC
Confidence                4566665  34556788999999987 677888889999999764                223333  3445567


Q ss_pred             ceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          434 VDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       434 ~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ..+++.++|.. +++-+      ..++.|.+|+..
T Consensus       203 ~giavD~~G~i-~Vad~------~~~~~v~~f~~~  230 (279)
T d1q7fa_         203 IGVGINSNGEI-LIADN------HNNFNLTIFTQD  230 (279)
T ss_dssp             EEEEECTTCCE-EEEEC------SSSCEEEEECTT
T ss_pred             cccccccCCeE-EEEEC------CCCcEEEEECCC
Confidence            88999998874 44322      113578888865

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.38  E-value=0.00015  Score=64.37  Aligned_cols=232  Identities=9%  Similarity=0.034  Sum_probs=140.2

Q ss_pred             EEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEe
Q 010997          145 RIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWS  224 (496)
Q Consensus       145 ~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd  224 (496)
                      ...|.+.++.+..+--..+.|.-||..++.            . ..+.-  ...+.++++.++|.+++++ .+ .|.++|
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~------------~-~~~~~--~~~~~~i~~~~dg~l~va~-~~-gl~~~d   84 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGR------------K-TVHAL--PFMGSALAKISDSKQLIAS-DD-GLFLRD   84 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTE------------E-EEEEC--SSCEEEEEEEETTEEEEEE-TT-EEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCe------------E-EEEEC--CCCcEEEEEecCCCEEEEE-eC-ccEEee
Confidence            345777677776666667889999988762            1 12221  1246789998888776654 34 588889


Q ss_pred             cCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcC----C
Q 010997          225 IQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGD----D  300 (496)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~----d  300 (496)
                      ..++........                             .       -......++++.+.|+| ++.++...    .
T Consensus        85 ~~tg~~~~l~~~-----------------------------~-------~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~  127 (295)
T d2ghsa1          85 TATGVLTLHAEL-----------------------------E-------SDLPGNRSNDGRMHPSG-ALWIGTMGRKAET  127 (295)
T ss_dssp             TTTCCEEEEECS-----------------------------S-------TTCTTEEEEEEEECTTS-CEEEEEEETTCCT
T ss_pred             cccceeeEEeee-----------------------------e-------cCCCcccceeeEECCCC-CEEEEeccccccc
Confidence            876543211100                             0       00112357889999998 55444322    2


Q ss_pred             CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCc-EEEEEcCCCcEEEEeCCCCCCCCCCCC--ceEeccCCCCEEE
Q 010997          301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDN-LILTGSADNSVRMFDRRNLTSNGVGSP--INKFEGHSAAVLC  377 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~--~~~~~~h~~~i~~  377 (496)
                      +.-.+|.+..++  ..... ..-...+.++|++ ++. ++++-+..+.|..|++........+..  ...+.+..+....
T Consensus       128 ~~g~l~~~~~g~--~~~~~-~~~~~~Ng~~~s~-d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG  203 (295)
T d2ghsa1         128 GAGSIYHVAKGK--VTKLF-ADISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG  203 (295)
T ss_dssp             TCEEEEEEETTE--EEEEE-EEESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred             cceeEeeecCCc--EEEEe-eccCCcceeeecC-CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccc
Confidence            345566666554  22222 3334568999999 555 566777788999998754221111111  1223344556889


Q ss_pred             EEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEec-CCCCcEEEEecC
Q 010997          378 VQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWN-ASDPWTVVSVSD  451 (496)
Q Consensus       378 l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~-p~~~~l~~s~s~  451 (496)
                      +++..+|. |.++.-..+.|..||-..                +++....--...+++++|- ++...|+++++.
T Consensus       204 ~~vD~~Gn-lWva~~~~g~V~~~dp~G----------------~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         204 SVCDAEGH-IWNARWGEGAVDRYDTDG----------------NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEECTTSC-EEEEEETTTEEEEECTTC----------------CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             eEEcCCCC-EEeeeeCCCceEEecCCC----------------cEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            99999997 665655678899999643                2333333223468999995 666778887553

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.33  E-value=0.00018  Score=63.89  Aligned_cols=198  Identities=12%  Similarity=0.148  Sum_probs=125.7

Q ss_pred             EEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEec-CCCCcceeeeecCCCCceEE
Q 010997          135 KTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTG-HQDNAEFALAMCPTEPYVLS  213 (496)
Q Consensus       135 ~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~-h~~~~v~~l~~~p~~~~l~s  213 (496)
                      ..+..+..+.++++.+ ++.++++ +.+ .|.++|..++....          ...... .....++.+.+.|+|++.++
T Consensus        53 ~~~~~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~----------l~~~~~~~~~~~~nd~~vd~~G~iw~~  119 (295)
T d2ghsa1          53 TVHALPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTL----------HAELESDLPGNRSNDGRMHPSGALWIG  119 (295)
T ss_dssp             EEEECSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEE----------EECSSTTCTTEEEEEEEECTTSCEEEE
T ss_pred             EEEECCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeE----------EeeeecCCCcccceeeEECCCCCEEEE
Confidence            4455567789999888 7777765 444 58899988772110          000001 11113567788888876555


Q ss_pred             ecC----CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccC
Q 010997          214 GGK----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPS  289 (496)
Q Consensus       214 g~~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  289 (496)
                      ...    .+.-.+|.+..+..                                         ..+...-...+.+.|+++
T Consensus       120 ~~~~~~~~~~g~l~~~~~g~~-----------------------------------------~~~~~~~~~~Ng~~~s~d  158 (295)
T d2ghsa1         120 TMGRKAETGAGSIYHVAKGKV-----------------------------------------TKLFADISIPNSICFSPD  158 (295)
T ss_dssp             EEETTCCTTCEEEEEEETTEE-----------------------------------------EEEEEEESSEEEEEECTT
T ss_pred             eccccccccceeEeeecCCcE-----------------------------------------EEEeeccCCcceeeecCC
Confidence            332    12233444332211                                         112222334578999999


Q ss_pred             CCceEEEEcCCCeEEEEEccCCCc-----c-ceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCC
Q 010997          290 SAQEFCSVGDDSCLILWDARVGTS-----P-VIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGS  363 (496)
Q Consensus       290 ~~~~l~s~~~dg~i~iwd~~~~~~-----~-~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~  363 (496)
                      +..++++-+..+.|..|++.....     . ..............+++.. ++++.++.-..+.|..||..       ++
T Consensus       159 ~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp~-------G~  230 (295)
T d2ghsa1         159 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-------GN  230 (295)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-------CC
T ss_pred             CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecCC-------Cc
Confidence            966778888899999998754321     0 1111223345678899998 88888887778899999965       57


Q ss_pred             CceEeccCCCCEEEEEEc-CCCCCEEEEEeCC
Q 010997          364 PINKFEGHSAAVLCVQWS-PDKSSVFGSSAED  394 (496)
Q Consensus       364 ~~~~~~~h~~~i~~l~~s-p~~~~llas~~~d  394 (496)
                      .+..+.--...+++++|- |+...|++|.+..
T Consensus       231 ~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~  262 (295)
T d2ghsa1         231 HIARYEVPGKQTTCPAFIGPDASRLLVTSARE  262 (295)
T ss_dssp             EEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EeeEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence            888887666679999996 6777788876643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2e-05  Score=75.17  Aligned_cols=150  Identities=13%  Similarity=0.196  Sum_probs=86.6

Q ss_pred             EecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCC--CCcceeeeecCCCCceEEec---------
Q 010997          147 RELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQ--DNAEFALAMCPTEPYVLSGG---------  215 (496)
Q Consensus       147 ~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~--~~~v~~l~~~p~~~~l~sg~---------  215 (496)
                      .|.+ ++.++.. ..+|.|.+||+.++..            ...+..+.  .-.+....|+||+++++...         
T Consensus        23 ~W~~-~~~~~~~-~~~g~i~~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s   88 (465)
T d1xfda1          23 KWIS-DTEFIYR-EQKGTVRLWNVETNTS------------TVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS   88 (465)
T ss_dssp             CBSS-SSCBCCC-CSSSCEEEBCGGGCCC------------EEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred             EEeC-CCcEEEE-eCCCcEEEEECCCCCE------------EEEEcCccccccccceeEECCCCCeEEEEEcccceeEee
Confidence            5777 5555543 5578999999988732            12222221  11355778999999877653         


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      ..+.+.++|+.++.....                                      .........+....|+|+|. .+|
T Consensus        89 ~~~~~~i~d~~~~~~~~l--------------------------------------~~~~~~~~~l~~~~wSPDG~-~ia  129 (465)
T d1xfda1          89 YTGYYVLSKIPHGDPQSL--------------------------------------DPPEVSNAKLQYAGWGPKGQ-QLI  129 (465)
T ss_dssp             CCSEEEEEESSSCCCEEC--------------------------------------CCTTCCSCCCSBCCBCSSTT-CEE
T ss_pred             ccccEEEEEccCCceeec--------------------------------------cCccCCccccceeeeccCCc-eEE
Confidence            356788888876533211                                      00111223455678999995 454


Q ss_pred             EEcCCCeEEEEEccCCCccceeeeccCCCC-----------------eEEEEecCCCCcEEEEEcCC-CcEEEEe
Q 010997          296 SVGDDSCLILWDARVGTSPVIKVEKAHDAD-----------------LHCVDWNPLDDNLILTGSAD-NSVRMFD  352 (496)
Q Consensus       296 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------v~~i~~sp~~~~~l~sgs~d-g~i~iwd  352 (496)
                      -.. ++.|.+.+...+... ..+..+....                 -..+.||| ++..||....| ..|..+.
T Consensus       130 fv~-~~nl~~~~~~~~~~~-~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~  201 (465)
T d1xfda1         130 FIF-ENNIYYCAHVGKQAI-RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIME  201 (465)
T ss_dssp             EEE-TTEEEEESSSSSCCE-EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEE
T ss_pred             EEe-cceEEEEecCCCceE-EEecccCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceee
Confidence            443 567888887665521 1121121111                 25778999 89998886533 3344443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=0.00021  Score=67.83  Aligned_cols=296  Identities=12%  Similarity=0.054  Sum_probs=141.8

Q ss_pred             CceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC--------CcceeeeecCCCCceE
Q 010997          141 GEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD--------NAEFALAMCPTEPYVL  212 (496)
Q Consensus       141 ~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~--------~~v~~l~~~p~~~~l~  212 (496)
                      +.+....|+| +++.||-.. ++.|.+.+...+.........   .....+.|..+        ..-.++.|+|||++||
T Consensus       114 ~~l~~~~wSP-DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g---~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ia  188 (465)
T d1xfda1         114 AKLQYAGWGP-KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTG---KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA  188 (465)
T ss_dssp             CCCSBCCBCS-STTCEEEEE-TTEEEEESSSSSCCEEEECCC---BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred             cccceeeecc-CCceEEEEe-cceEEEEecCCCceEEEeccc---CcceeeccccchhhhhhhccccceEEECCCCCeEE
Confidence            4466788999 777777665 468888888765322111100   11112222221        0124678999999998


Q ss_pred             EecC-CCcEEEEecCCccccccCCccccc--cCCCCCceeccCCCCCCCCCCCCCCCCcCC------eeeeecCCCceeE
Q 010997          213 SGGK-DKSVVLWSIQDHITSSATDPATAK--SAGSSGSIIKQSPKPGDGNDKAADGPSVGP------RGIYNGHEDTVED  283 (496)
Q Consensus       213 sg~~-Dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~h~~~v~~  283 (496)
                      .... +..|..+.+...............  ..+...         ....+.+++......      .........-+..
T Consensus       189 f~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~n---------p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN---------PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC---------CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             EEEecccccceeecccccccccceeeeeeccccCCCC---------CceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            7753 455656554321100000000000  000000         000011111111100      0111122334678


Q ss_pred             EEEccCCCceEEEE-cCC---CeEEEEEccCCCccceeeeccCCCCe----EEEEecCCCCcEE--E-EEcCCC--cEEE
Q 010997          284 VTFCPSSAQEFCSV-GDD---SCLILWDARVGTSPVIKVEKAHDADL----HCVDWNPLDDNLI--L-TGSADN--SVRM  350 (496)
Q Consensus       284 l~~~~~~~~~l~s~-~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v----~~i~~sp~~~~~l--~-sgs~dg--~i~i  350 (496)
                      +.|++++ .+++.. ..+   ..|.++|..++....+... .....|    ....|+| ++..+  + ..-.+|  .+..
T Consensus       260 ~~W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e-~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~  336 (465)
T d1xfda1         260 VKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYH  336 (465)
T ss_dssp             EEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-ECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEE
T ss_pred             eEEcCCC-eEEEEEEccccccceEEEEcCCCCcEEEEEEE-cCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEE
Confidence            8999988 554443 222   3588889988873322221 222222    3457888 66532  2 222333  3444


Q ss_pred             EeCCCCCCCCCCCCceEeccCCCCEEEE-EEcCCCCCEEEEEeCCC--cEEEEECCCCCcccCCCCCCCCCCCeeEEEec
Q 010997          351 FDRRNLTSNGVGSPINKFEGHSAAVLCV-QWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHA  427 (496)
Q Consensus       351 wd~~~~~~~~~~~~~~~~~~h~~~i~~l-~~sp~~~~llas~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (496)
                      .++........+..+..+....-.|..+ .|++++..|+.++..++  .-+||.+...+..          ...++....
T Consensus       337 ~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~----------~~~~lt~~~  406 (465)
T d1xfda1         337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF----------NRQCLSCDL  406 (465)
T ss_dssp             EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC----------CCBCSSTTS
T ss_pred             EEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCC----------cceeecccc
Confidence            4433211111134445555445566665 68998887776776542  3456655432211          111111111


Q ss_pred             CCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          428 GHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       428 ~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      .......++.|||++.+++.+++.     -.--.+.+++..
T Consensus       407 ~~~~~~~~~~~S~~~~y~v~~~s~-----~~~P~~~~~~~~  442 (465)
T d1xfda1         407 VENCTYFSASFSHSMDFFLLKCEG-----PGVPMVTVHNTT  442 (465)
T ss_dssp             SSSCCCCEEEECTTSSEEEEECCS-----SSSCCEEEEETT
T ss_pred             CCCCCEEEEEECCCCCEEEEEeec-----CCCCeEEEEECC
Confidence            233457799999999999887753     222355666654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.84  E-value=0.00029  Score=61.51  Aligned_cols=65  Identities=6%  Similarity=0.045  Sum_probs=41.1

Q ss_pred             ecCCC--CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEec-CCC-----c
Q 010997          148 ELPQN--TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGG-KDK-----S  219 (496)
Q Consensus       148 ~~p~~--~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~-~Dg-----~  219 (496)
                      .+| +  |+.+|-.+ +|.|.+.|+.++            ++ ..|..+.. .+...+|+|||++||-.. .++     .
T Consensus         6 ~sP-di~G~~v~f~~-~~dl~~~d~~~g------------~~-~~Lt~~~~-~~~~p~~SPDG~~iaf~~~~~~~~~~~~   69 (281)
T d1k32a2           6 LNP-DIHGDRIIFVC-CDDLWEHDLKSG------------ST-RKIVSNLG-VINNARFFPDGRKIAIRVMRGSSLNTAD   69 (281)
T ss_dssp             EEE-EEETTEEEEEE-TTEEEEEETTTC------------CE-EEEECSSS-EEEEEEECTTSSEEEEEEEESTTCCEEE
T ss_pred             cCC-CCCCCEEEEEe-CCcEEEEECCCC------------CE-EEEecCCC-cccCEEECCCCCEEEEEEeeCCCCCceE
Confidence            467 5  66666544 457888899877            22 23444544 468899999999888543 222     3


Q ss_pred             EEEEecCCc
Q 010997          220 VVLWSIQDH  228 (496)
Q Consensus       220 i~iwd~~~~  228 (496)
                      |.+.+..++
T Consensus        70 i~~~~~~~g   78 (281)
T d1k32a2          70 LYFYNGENG   78 (281)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEEecCC
Confidence            555565544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.012  Score=50.59  Aligned_cols=224  Identities=4%  Similarity=-0.078  Sum_probs=131.4

Q ss_pred             cEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEe-cCCCcEEEEecCCccccccCCccccccC
Q 010997          164 DVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSG-GKDKSVVLWSIQDHITSSATDPATAKSA  242 (496)
Q Consensus       164 ~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg-~~Dg~i~iwd~~~~~~~~~~~~~~~~~~  242 (496)
                      .|+-.++.+.            .....+.+- . .+.+++|++.++.|+-. ...+.|.-.+++.....           
T Consensus        11 ~I~~~~l~~~------------~~~~~~~~~-~-~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~-----------   65 (266)
T d1ijqa1          11 EVRKMTLDRS------------EYTSLIPNL-R-NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------   65 (266)
T ss_dssp             SEEEEETTSC------------CCEEEECSC-S-SEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------
T ss_pred             eEEEEECCCC------------cceeeeCCC-C-ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC-----------
Confidence            5888888765            222223332 3 35689998877755544 34566666555421100           


Q ss_pred             CCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccC
Q 010997          243 GSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAH  322 (496)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  322 (496)
                                               ......+......+.+|++.+.+.++..+-...+.|.+.++....  ........
T Consensus        66 -------------------------~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~--~~~~~~~~  118 (266)
T d1ijqa1          66 -------------------------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFREN  118 (266)
T ss_dssp             ---------------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS--EEEEEECT
T ss_pred             -------------------------cceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCce--EEEEEcCC
Confidence                                     000122223334567888887776778887888999999987655  23333345


Q ss_pred             CCCeEEEEecCCCCcEEEEEc-CCCcEEEEeCCCCCCCCCCCCceEec-cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 010997          323 DADLHCVDWNPLDDNLILTGS-ADNSVRMFDRRNLTSNGVGSPINKFE-GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW  400 (496)
Q Consensus       323 ~~~v~~i~~sp~~~~~l~sgs-~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~llas~~~dg~i~iw  400 (496)
                      ......++++|..+.++.+.. ..+.|.-.++..       .....+. ..-.....+++.+.+..|+.+-...+.|...
T Consensus       119 ~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG-------s~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~  191 (266)
T d1ijqa1         119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI  191 (266)
T ss_dssp             TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-------CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCcceEEEEcccCeEEEeccCCCcceeEeccCC-------CceecccccccceeeEEEeeccccEEEEecCCcCEEEEE
Confidence            567889999995555555542 345566666653       3344443 2335678999999888788777778899999


Q ss_pred             ECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          401 DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       401 d~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ++.....             ..+...........++++.  +.+++.+-..+       +.|...+..
T Consensus       192 ~~dG~~~-------------~~~~~~~~~~~~p~~lav~--~~~ly~td~~~-------~~I~~~~~~  237 (266)
T d1ijqa1         192 DVNGGNR-------------KTILEDEKRLAHPFSLAVF--EDKVFWTDIIN-------EAIFSANRL  237 (266)
T ss_dssp             ETTSCSC-------------EEEEECTTTTSSEEEEEEE--TTEEEEEETTT-------TEEEEEETT
T ss_pred             ECCCCCE-------------EEEEeCCCcccccEEEEEE--CCEEEEEECCC-------CeEEEEECC
Confidence            9865311             2232222222334566665  45666654333       666666654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=0.017  Score=49.49  Aligned_cols=165  Identities=5%  Similarity=-0.011  Sum_probs=103.5

Q ss_pred             eecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeC
Q 010997          274 YNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDR  353 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~  353 (496)
                      +..+...+.+|+|.+....++.+-..++.|...++....  ...........+..++++...+.+..+-...+.|.+.++
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~--~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~  108 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE--PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC--CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC--cEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEec
Confidence            344445678899998775666666778899999987655  233333334568889988745666667777889999998


Q ss_pred             CCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE--ECCCCCcccCCCCCCCCCCCeeEEEecCCCC
Q 010997          354 RNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW--DYEKVGKKVEQGPRTTNYPAGLFFQHAGHRD  431 (496)
Q Consensus       354 ~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  431 (496)
                      ..      ......+...-..+..+++.|...+++.+-...+..+||  ++...+.             ..+ . ...-.
T Consensus       109 dg------~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-------------~~i-~-~~~~~  167 (263)
T d1npea_         109 DG------TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-------------RIL-A-QDNLG  167 (263)
T ss_dssp             TS------CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-------------EEE-E-CTTCS
T ss_pred             CC------ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-------------eee-e-eeccc
Confidence            75      222222333346789999999888777665433343455  4443211             111 1 11223


Q ss_pred             CcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          432 KVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       432 ~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      ...++++.+.+..+..+-+..       +.|...++.
T Consensus       168 ~P~glaiD~~~~~lYw~d~~~-------~~I~~~~~~  197 (263)
T d1npea_         168 LPNGLTFDAFSSQLCWVDAGT-------HRAECLNPA  197 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTT-------TEEEEEETT
T ss_pred             ccceEEEeecCcEEEEEeCCC-------CEEEEEECC
Confidence            456788887777776653332       677777776

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=0.023  Score=48.58  Aligned_cols=204  Identities=6%  Similarity=0.008  Sum_probs=122.7

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceE-EecC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVL-SGGK  216 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~-sg~~  216 (496)
                      .+...+..|+|.+.++.++.+-..++.|+..++...            .....+..-.. .+.++++..-+..|. +-..
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~------------~~~~v~~~~~~-~p~~iAvD~~~~~lY~~d~~   99 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG------------EPTTIIRQDLG-SPEGIALDHLGRTIFWTDSQ   99 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC------------CCEEEECTTCC-CEEEEEEETTTTEEEEEETT
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccC------------CcEEEEEeccc-cccEEEEeccCCeEEEeccC
Confidence            344457889999856666666667788998888765            22222322222 357888876555454 5556


Q ss_pred             CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEE
Q 010997          217 DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCS  296 (496)
Q Consensus       217 Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  296 (496)
                      .+.|.+.+++.....                                        ..+......+..+++.|..+.++.+
T Consensus       100 ~~~I~~~~~dg~~~~----------------------------------------~l~~~~l~~p~~l~vdp~~g~ly~t  139 (263)
T d1npea_         100 LDRIEVAKMDGTQRR----------------------------------------VLFDTGLVNPRGIVTDPVRGNLYWT  139 (263)
T ss_dssp             TTEEEEEETTSCSCE----------------------------------------EEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEecCCceEE----------------------------------------EEecccccCCcEEEEecccCcEEEe
Confidence            778999887643210                                        1122223567899999987566656


Q ss_pred             EcCCCeEEEE--EccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          297 VGDDSCLILW--DARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       297 ~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      -...+..+|+  ++....  ........-...+.|++++.++.+..+-...+.|...|+..      ......+.+. ..
T Consensus       140 ~~~~~~~~I~r~~~dG~~--~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g------~~~~~v~~~~-~~  210 (263)
T d1npea_         140 DWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ------PGRRKVLEGL-QY  210 (263)
T ss_dssp             ECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE------EEEEEEEECC-CS
T ss_pred             ecCCCCcEEEEecCCCCC--ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC------CCeEEEECCC-CC
Confidence            4333333444  554333  22222233456789999984444556656778999999875      2222223332 23


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      ..+|++.  +.+|+.+-...+.|...|....
T Consensus       211 P~~lav~--~~~lYwtd~~~~~I~~~~~~~g  239 (263)
T d1npea_         211 PFAVTSY--GKNLYYTDWKTNSVIAMDLAIS  239 (263)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred             cEEEEEE--CCEEEEEECCCCEEEEEECCCC
Confidence            4678775  4457777767788888888764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.14  E-value=0.034  Score=50.37  Aligned_cols=79  Identities=16%  Similarity=0.062  Sum_probs=48.4

Q ss_pred             cCCCceeEEEecCCCCcEEEEEeCC-CcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecC
Q 010997          138 IHPGEVNRIRELPQNTKIVATHTDS-PDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       138 ~h~~~V~~l~~~p~~~~~lat~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      .|.......++.+ ++.+++.|+.+ ..+.+||..+..-.          ....+....  .-.+.+..++|++++.|+.
T Consensus        73 ~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~----------~~~~~~~~r--~~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3          73 KHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWI----------PGPDMQVAR--GYQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             SCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEE----------ECCCCSSCC--SSCEEEECTTSCEEEECCC
T ss_pred             CcccceeEEEEec-CCcEEEeecCCCcceeEecCccCccc----------ccccccccc--cccceeeecCCceeeeccc
Confidence            3433334556777 88888888765 58999998876211          111111111  1235666778888888875


Q ss_pred             C------CcEEEEecCCcc
Q 010997          217 D------KSVVLWSIQDHI  229 (496)
Q Consensus       217 D------g~i~iwd~~~~~  229 (496)
                      +      ..+.+||..+..
T Consensus       140 ~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         140 WSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             CCSSSCCCCEEEEETTTTE
T ss_pred             cccccccceeeeecCCCCc
Confidence            3      368899987653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.06  E-value=0.01  Score=53.56  Aligned_cols=82  Identities=9%  Similarity=0.063  Sum_probs=50.8

Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCD  454 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~  454 (496)
                      ...+.++|||+++++++..+.++.|+|+++.........    .+...+..-......-..-+|...| ....       
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~----~~~~~~~~e~elglgPLht~fd~~g-~ayt-------  344 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA----DPRSAVVAEPELGLGPLHTAFDGRG-NAYT-------  344 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-----GGGGEEECCBCCSCEEEEEECTTS-EEEE-------
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccC----CccccEEeecccCcCccccccCCCc-eEEE-------
Confidence            467899999999999999999999999986433221100    1112222222222334456777655 3333       


Q ss_pred             CCCCCCeEEEeecC
Q 010997          455 STGGGGTLQIWRMS  468 (496)
Q Consensus       455 sgg~Dg~i~iw~~~  468 (496)
                      |---|..|--|++.
T Consensus       345 slfids~v~kw~~~  358 (459)
T d1fwxa2         345 SLFLDSQVVKWNIE  358 (459)
T ss_dssp             EETTTTEEEEEEHH
T ss_pred             EeeccceEEEEecc
Confidence            33346899999986

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.89  E-value=0.1  Score=44.35  Aligned_cols=71  Identities=10%  Similarity=0.108  Sum_probs=40.9

Q ss_pred             CCCeEEEEecCCCCcEEEEEcCCC--cEEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 010997          323 DADLHCVDWNPLDDNLILTGSADN--SVRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW  400 (496)
Q Consensus       323 ~~~v~~i~~sp~~~~~l~sgs~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iw  400 (496)
                      ........+++ + ..+.....++  .|.++|+..       ..+..+..+.. .....|+|+|+.|+.+.  ++.|.++
T Consensus       191 ~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~d~~g-------~~~~~lt~~~~-~~~~~~SpDG~~I~f~~--~~~l~~~  258 (281)
T d1k32a2         191 STHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDG-------KDLRKHTSFTD-YYPRHLNTDGRRILFSK--GGSIYIF  258 (281)
T ss_dssp             SSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTS-------CSCEECCCCCS-SCEEEEEESSSCEEEEE--TTEEEEE
T ss_pred             ccccceeeeec-c-ccceecccccccceEEEeCCC-------CceEEeecCCC-cccccCcCCCCEEEEEe--CCEEEEE
Confidence            33444555555 3 3333333333  577778775       33444433322 22346899999876544  6789999


Q ss_pred             ECCCC
Q 010997          401 DYEKV  405 (496)
Q Consensus       401 d~~~~  405 (496)
                      |+...
T Consensus       259 d~~~g  263 (281)
T d1k32a2         259 NPDTE  263 (281)
T ss_dssp             CTTTC
T ss_pred             ECCCC
Confidence            99874

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.43  E-value=0.22  Score=42.32  Aligned_cols=196  Identities=12%  Similarity=0.116  Sum_probs=112.8

Q ss_pred             cCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcEEEEecCCc
Q 010997          149 LPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDH  228 (496)
Q Consensus       149 ~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i~iwd~~~~  228 (496)
                      +| ..++||.-+ ..+++|||+++.            ..+..+.-..  .|.--.|-.+. .|+-.. +..|.-|+++..
T Consensus        71 hP-~~~IiALra-g~~LQiFnletK------------~klks~~~~e--~VvfWkWis~~-~L~lVT-~taVYHW~~~g~  132 (327)
T d1utca2          71 NP-ASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTD--DVTFWKWISLN-TVALVT-DNAVYHWSMEGE  132 (327)
T ss_dssp             CS-SSSEEEEEE-TTEEEEEETTTT------------EEEEEEECSS--CCCEEEESSSS-EEEEEC-SSEEEEEESSSS
T ss_pred             CC-CCcEEEEec-CCeEEEEehhHh------------hhhceEEcCC--CcEEEEecCCC-EEEEEc-CCceEEEcccCC
Confidence            56 677887766 348999999987            3333333333  34445665443 344333 568999998632


Q ss_pred             cccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC----CceeEEEEccCCCceEEEE------c
Q 010997          229 ITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE----DTVEDVTFCPSSAQEFCSV------G  298 (496)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~l~s~------~  298 (496)
                      .                                       .|.+.+..|.    ..|-.-..+++...++++|      +
T Consensus       133 s---------------------------------------~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~  173 (327)
T d1utca2         133 S---------------------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  173 (327)
T ss_dssp             C---------------------------------------CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTE
T ss_pred             C---------------------------------------CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCc
Confidence            1                                       1233443332    2444555556653333333      1


Q ss_pred             CCCeEEEEEccCCCccceeeeccCCCCeEEEEecCC--CCcEEEEEc---CCCcEEEEeCCCCCCCCCC--CCceEe-c-
Q 010997          299 DDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPL--DDNLILTGS---ADNSVRMFDRRNLTSNGVG--SPINKF-E-  369 (496)
Q Consensus       299 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs---~dg~i~iwd~~~~~~~~~~--~~~~~~-~-  369 (496)
                      -.|.+.+|......   ...+.+|.+....+.+.-.  ...+|+.+.   ..+.++|.++.........  +....+ - 
T Consensus       174 i~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fp  250 (327)
T d1utca2         174 VVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP  250 (327)
T ss_dssp             EEEEEEEEETTTTE---EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCC
T ss_pred             eeEEEEEEEeccCc---CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECC
Confidence            23778999887654   4566777766666655321  123444432   3368999999874321111  111111 1 


Q ss_pred             --cCCCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          370 --GHSAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       370 --~h~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                        .-.+-..++..|+... ++..-+.-|.|++||+.+.
T Consensus       251 pea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTg  287 (327)
T d1utca2         251 PEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG  287 (327)
T ss_dssp             TTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTC
T ss_pred             ccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccc
Confidence              1234456888888777 4557778999999999985

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.25  E-value=0.34  Score=42.66  Aligned_cols=34  Identities=12%  Similarity=0.104  Sum_probs=29.2

Q ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCcEEEEECCCC
Q 010997          372 SAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       372 ~~~i~~l~~sp~~~~llas~~~dg~i~iwd~~~~  405 (496)
                      -...+.|+++|++++|+++-+..++|++|++...
T Consensus       205 l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         205 FDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            3457899999999999888888999999998763

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.28  Score=41.52  Aligned_cols=211  Identities=9%  Similarity=-0.017  Sum_probs=120.9

Q ss_pred             ecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecCCCCce-EEec
Q 010997          137 IIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYV-LSGG  215 (496)
Q Consensus       137 ~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l-~sg~  215 (496)
                      +.....+..++|.+..+.+..+=...+.|+--++......         .....+....-..+.+|++.+.+..| .+-.
T Consensus        26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~---------~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~   96 (266)
T d1ijqa1          26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------SSYDTVISRDIQAPDGLAVDWIHSNIYWTDS   96 (266)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------CEEEECSSCSCCCEEEEETTTTEEEEEET
T ss_pred             eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCC---------cceEEEEeCCCCCcceEEEeeccceEEEEec
Confidence            3455667889999855555555556677777666543100         11112222221235678887655544 4445


Q ss_pred             CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEE
Q 010997          216 KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFC  295 (496)
Q Consensus       216 ~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  295 (496)
                      ..++|.+.+++....                                        ...+........+++++|..+.++.
T Consensus        97 ~~~~I~v~~~~g~~~----------------------------------------~~~~~~~~~~P~~l~vd~~~g~ly~  136 (266)
T d1ijqa1          97 VLGTVSVADTKGVKR----------------------------------------KTLFRENGSKPRAIVVDPVHGFMYW  136 (266)
T ss_dssp             TTTEEEEEETTSSSE----------------------------------------EEEEECTTCCEEEEEEETTTTEEEE
T ss_pred             CCCEEEeEecCCceE----------------------------------------EEEEcCCCCCcceEEEEcccCeEEE
Confidence            677899998864321                                        1223334456788999987645555


Q ss_pred             EE-cCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC
Q 010997          296 SV-GDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA  374 (496)
Q Consensus       296 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  374 (496)
                      +- +..+.|.-.++....  ........-...+.+++++..+.+..+-...+.|...|+....    ...+.........
T Consensus       137 ~~~~~~~~I~r~~~dGs~--~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~----~~~~~~~~~~~~~  210 (266)
T d1ijqa1         137 TDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN----RKTILEDEKRLAH  210 (266)
T ss_dssp             EECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEEECTTTTSS
T ss_pred             eccCCCcceeEeccCCCc--eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC----EEEEEeCCCcccc
Confidence            54 334567666765443  2222223346678999998445566666777899999987511    1112222222334


Q ss_pred             EEEEEEcCCCCCEEEEEeCCCcEEEEECCC
Q 010997          375 VLCVQWSPDKSSVFGSSAEDGLLNIWDYEK  404 (496)
Q Consensus       375 i~~l~~sp~~~~llas~~~dg~i~iwd~~~  404 (496)
                      ..+|++.  +.+|+.+-..++.|...+...
T Consensus       211 p~~lav~--~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         211 PFSLAVF--EDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEEE--CCEEEEEECCCCeEEEEECCC
Confidence            6677776  345777766778887777665

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.08  E-value=0.026  Score=50.97  Aligned_cols=79  Identities=15%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             CCeEEEEecCCCCcEEE-EEcCCCcEEEEeCCCCCCC-----CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcE
Q 010997          324 ADLHCVDWNPLDDNLIL-TGSADNSVRMFDRRNLTSN-----GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLL  397 (496)
Q Consensus       324 ~~v~~i~~sp~~~~~l~-sgs~dg~i~iwd~~~~~~~-----~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i  397 (496)
                      .....+..+| ++.+++ +|..+.++.++|++++...     .....+..-....-....-+|...|. .+.|---|..|
T Consensus       275 KsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~-aytslfids~v  352 (459)
T d1fwxa2         275 NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGN-AYTSLFLDSQV  352 (459)
T ss_dssp             SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSE-EEEEETTTTEE
T ss_pred             CCCCceEECC-CCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCce-EEEEeeccceE
Confidence            3456789999 777665 5566899999999853210     00011111111233456778988874 66677789999


Q ss_pred             EEEECCC
Q 010997          398 NIWDYEK  404 (496)
Q Consensus       398 ~iwd~~~  404 (496)
                      .-|++..
T Consensus       353 ~kw~~~~  359 (459)
T d1fwxa2         353 VKWNIED  359 (459)
T ss_dssp             EEEEHHH
T ss_pred             EEEecch
Confidence            9999864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.08  E-value=0.34  Score=41.12  Aligned_cols=203  Identities=15%  Similarity=0.215  Sum_probs=123.1

Q ss_pred             eEEEecCCCceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCC---CcceeeeecCCCC
Q 010997          133 KHKTIIHPGEVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQD---NAEFALAMCPTEP  209 (496)
Q Consensus       133 ~~~~~~h~~~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~---~~v~~l~~~p~~~  209 (496)
                      +++....+..|.-=+|..  .+.|+-.+.+ .|+-|+++..           ..|...+..|..   .-|.....+++.+
T Consensus        95 klks~~~~e~VvfWkWis--~~~L~lVT~t-aVYHW~~~g~-----------s~P~k~fdR~~~L~~~QIInY~~d~~~k  160 (327)
T d1utca2          95 KMKAHTMTDDVTFWKWIS--LNTVALVTDN-AVYHWSMEGE-----------SQPVKMFDRHSSLAGCQIINYRTDAKQK  160 (327)
T ss_dssp             EEEEEECSSCCCEEEESS--SSEEEEECSS-EEEEEESSSS-----------CCCEEEEECCGGGTTCEEEEEEECTTSC
T ss_pred             hhceEEcCCCcEEEEecC--CCEEEEEcCC-ceEEEcccCC-----------CCchhhhhhcccccCceEEEEEECCCCC
Confidence            445555667787777875  3456665544 8999999654           145666666643   2355667778888


Q ss_pred             ceEEec-------CCCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCcee
Q 010997          210 YVLSGG-------KDKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVE  282 (496)
Q Consensus       210 ~l~sg~-------~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  282 (496)
                      +++..|       -.|.+.+|..+....                                         +.+.+|.....
T Consensus       161 W~~l~GI~~~~~~i~G~mQLYS~er~~s-----------------------------------------Q~ieGhaa~F~  199 (327)
T d1utca2         161 WLLLTGISAQQNRVVGAMQLYSVDRKVS-----------------------------------------QPIEGHAASFA  199 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEETTTTEE-----------------------------------------EEECCSEEEEE
T ss_pred             EEEEEeEecCCCceeEEEEEEEeccCcC-----------------------------------------ccccceeeeeE
Confidence            665432       246788888775432                                         55666665544


Q ss_pred             EEEEccC--CCceEEEE---cCCCeEEEEEccCCC---cccee----ee---ccCCCCeEEEEecCCCCcEEEEEcCCCc
Q 010997          283 DVTFCPS--SAQEFCSV---GDDSCLILWDARVGT---SPVIK----VE---KAHDADLHCVDWNPLDDNLILTGSADNS  347 (496)
Q Consensus       283 ~l~~~~~--~~~~l~s~---~~dg~i~iwd~~~~~---~~~~~----~~---~~~~~~v~~i~~sp~~~~~l~sgs~dg~  347 (496)
                      .+.+.-.  ...+|+-+   ...+.++|.++....   .+..+    .+   ..-.+-..++..++ ...++..-+.-|.
T Consensus       200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~  278 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGY  278 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSE
T ss_pred             EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcE
Confidence            4443211  11223222   234789999887632   11101    11   12245567888888 7788888889999


Q ss_pred             EEEEeCCCCCCCCCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEE
Q 010997          348 VRMFDRRNLTSNGVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLN  398 (496)
Q Consensus       348 i~iwd~~~~~~~~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~  398 (496)
                      |++||+.+      +.++..-+--...|...+-+....-++ +-..+|.|.
T Consensus       279 i~lyDleT------gt~i~~nRIs~~~iF~~a~~~~~~Gi~-~VNr~GqVl  322 (327)
T d1utca2         279 IHLYDLET------GTCIYMNRISGETIFVTAPHEATAGII-GVNRKGQVL  322 (327)
T ss_dssp             EEEEETTT------CCEEEEEECCSSCEEEEEEETTTTEEE-EEETTSEEE
T ss_pred             EEEEEccc------ccEEEEeecCCCceEEeccCCCCceEE-EECCCCeEE
Confidence            99999999      778777666666666555554444354 344566553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.40  E-value=0.44  Score=43.50  Aligned_cols=210  Identities=10%  Similarity=0.026  Sum_probs=102.9

Q ss_pred             ceeeeecCCCCceEE-ecC----CCcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeee
Q 010997          199 EFALAMCPTEPYVLS-GGK----DKSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGI  273 (496)
Q Consensus       199 v~~l~~~p~~~~l~s-g~~----Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (496)
                      +.+++++|++++++- -+.    -..|++.|+.++....                                       ..
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~---------------------------------------~~  167 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP---------------------------------------DV  167 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE---------------------------------------EE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecc---------------------------------------cc
Confidence            345678999997773 222    3479999998764311                                       11


Q ss_pred             eecCCCceeEEEEccCCCceEEEEcC---------------CCeEEEEEccCCCccceeeeccCC--CCeEEEEecCCCC
Q 010997          274 YNGHEDTVEDVTFCPSSAQEFCSVGD---------------DSCLILWDARVGTSPVIKVEKAHD--ADLHCVDWNPLDD  336 (496)
Q Consensus       274 ~~~h~~~v~~l~~~~~~~~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~i~~sp~~~  336 (496)
                      +..  .....+.|.+++..++.+.-.               ...|..+.+.+....-...+....  ..+..+..++ ++
T Consensus       168 i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~  244 (430)
T d1qfma1         168 LER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DG  244 (430)
T ss_dssp             EEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TS
T ss_pred             ccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-Cc
Confidence            111  112467899998555555322               125778887776533333443332  3456677788 77


Q ss_pred             cEEEEEc---CCCc--EEEEeCCCCCCCCC--CCCceEeccCCCCEEEEEEcCCCCCEEEEEeC---CCcEEEEECCCCC
Q 010997          337 NLILTGS---ADNS--VRMFDRRNLTSNGV--GSPINKFEGHSAAVLCVQWSPDKSSVFGSSAE---DGLLNIWDYEKVG  406 (496)
Q Consensus       337 ~~l~sgs---~dg~--i~iwd~~~~~~~~~--~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~---dg~i~iwd~~~~~  406 (496)
                      .+++...   .++.  +.+.|+........  ......+......+.-+. +..+. +++....   ++.|...++....
T Consensus       245 ~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~Tn~~a~~~~L~~~~~~~~~  322 (430)
T d1qfma1         245 RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVT-NEGTV-FTFKTNRHSPNYRLINIDFTDPE  322 (430)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEE-EETTE-EEEEECTTCTTCEEEEEETTBCC
T ss_pred             ceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEe-cCCce-eecccCcccccceeEEecCCCCc
Confidence            7765432   2333  44455554221100  111222232233333332 22333 4433332   4667777776532


Q ss_pred             cccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          407 KKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      ..            ........+...+..-.+...+.+++++..++     .-+.|+++++..
T Consensus       323 ~~------------~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~-----~~~~l~v~~~~~  368 (430)
T d1qfma1         323 ES------------KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD-----VKNTLQLHDLAT  368 (430)
T ss_dssp             GG------------GCEEEECCCSSCEEEEEEEETTTEEEEEEEET-----TEEEEEEEETTT
T ss_pred             cc------------cceEEecccCcceeeeEEEEECCEEEEEEEcC-----CEeEEEEEECCC
Confidence            11            11111233344343333333345677666554     124678888764

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.89  E-value=0.27  Score=43.98  Aligned_cols=72  Identities=15%  Similarity=0.168  Sum_probs=46.2

Q ss_pred             EecCCCCcEEEEEeCCC-----------cEEEEeCCCCCCccccCCCCCCCCceEEe-cCCCCcceeeeecCCCCceEEe
Q 010997          147 RELPQNTKIVATHTDSP-----------DVLIWDVEAQPNRHAVLGATNSRPDLILT-GHQDNAEFALAMCPTEPYVLSG  214 (496)
Q Consensus       147 ~~~p~~~~~lat~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~l~-~h~~~~v~~l~~~p~~~~l~sg  214 (496)
                      +..+.++++++.|+.+.           .+.+||..++.-          .....+. .|.. ...+.++.+++.+++.|
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w----------~~~~~~~~~~~~-~~~~~~~~~~g~i~v~G   93 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV----------SDRTVTVTKHDM-FCPGISMDGNGQIVVTG   93 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB----------CCCEEEECSCCC-SSCEEEECTTSCEEEEC
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcE----------eecCCCCCCccc-ceeEEEEecCCcEEEee
Confidence            33455888888887532           378999988721          2222222 2222 23456788899998888


Q ss_pred             cCC-CcEEEEecCCcc
Q 010997          215 GKD-KSVVLWSIQDHI  229 (496)
Q Consensus       215 ~~D-g~i~iwd~~~~~  229 (496)
                      +.+ ..+.+||..+..
T Consensus        94 g~~~~~~~~yd~~~~~  109 (387)
T d1k3ia3          94 GNDAKKTSLYDSSSDS  109 (387)
T ss_dssp             SSSTTCEEEEEGGGTE
T ss_pred             cCCCcceeEecCccCc
Confidence            765 589999987653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.98  E-value=1.1  Score=39.08  Aligned_cols=161  Identities=12%  Similarity=0.125  Sum_probs=87.1

Q ss_pred             ceeEEEEccCCCceEEEEcC------------CCeEEEEEccCCCccceeeeccCC-------CCeEEEEe--cCCCCc-
Q 010997          280 TVEDVTFCPSSAQEFCSVGD------------DSCLILWDARVGTSPVIKVEKAHD-------ADLHCVDW--NPLDDN-  337 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~-------~~v~~i~~--sp~~~~-  337 (496)
                      ...+|...|++ ..+++++.            .|.|.++|+.+..... ..+....       -....+.+  .+ ++. 
T Consensus        36 G~EDi~~~~dg-~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~-~~l~~~~~~~~~~~f~PhGi~l~~~~-dg~~  112 (340)
T d1v04a_          36 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDD-DNTV  112 (340)
T ss_dssp             CCCEEEECTTS-EEEEEECCCC--------CCCCEEEEEETTSSSCCE-EECEEECSSSCGGGCCEEEEEEEECT-TCCE
T ss_pred             CcceEEECCCC-cEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcc-eEEEecCCCCCCcceeccceeEEEcC-CCcE
Confidence            46688888988 55555432            4899999998765222 1111111       12233333  33 333 


Q ss_pred             EEEEE---cCCCcEEEEeCCCCCCCCCCCCceEecc-CCCCEEEEEEcCCCCCEEEEEeC---C------------CcEE
Q 010997          338 LILTG---SADNSVRMFDRRNLTSNGVGSPINKFEG-HSAAVLCVQWSPDKSSVFGSSAE---D------------GLLN  398 (496)
Q Consensus       338 ~l~sg---s~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~i~~l~~sp~~~~llas~~~---d------------g~i~  398 (496)
                      +|++.   ....+|.+|++.....  ....+.++.. .....+.|++..++. +++|-..   +            +...
T Consensus       113 ~L~vvnH~~~~~~ieif~~~~~~~--~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~  189 (340)
T d1v04a_         113 YLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSF  189 (340)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEE
T ss_pred             EEEEEeccCCCceeEEEEEeCCCC--eEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCcee
Confidence            34433   2456788888765210  0111222221 224578898888887 5656311   0            1233


Q ss_pred             EEECCCCCcccCCCCCCCCCCCeeEEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          399 IWDYEKVGKKVEQGPRTTNYPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       399 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      +|..... .            ...+   ...-..-+.++++|++.+++++-+..       +.|++|++..
T Consensus       190 v~~~~~~-~------------~~~~---~~~l~~pNGI~~s~d~~~lyVa~t~~-------~~i~~y~~~~  237 (340)
T d1v04a_         190 VTYYSPN-D------------VRVV---AEGFDFANGINISPDGKYVYIAELLA-------HKIHVYEKHA  237 (340)
T ss_dssp             EEEECSS-C------------EEEE---EEEESSEEEEEECTTSSEEEEEEGGG-------TEEEEEEECT
T ss_pred             EEEEcCC-c------------eEEE---cCCCCccceeEECCCCCEEEEEeCCC-------CeEEEEEeCC
Confidence            3333321 0            0111   11223578899999999988876655       8899999873

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.13  E-value=2.1  Score=37.87  Aligned_cols=97  Identities=13%  Similarity=0.120  Sum_probs=60.0

Q ss_pred             ceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCC
Q 010997          280 TVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSN  359 (496)
Q Consensus       280 ~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~  359 (496)
                      .|..++|+.+   .++.. .++.+..++...-.  .......-..++..+.++|   ..++....+|.+.++++..... 
T Consensus        88 ~v~~vafs~d---~l~v~-~~~~l~~~~~~~l~--~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~-  157 (381)
T d1xipa_          88 DVIFVCFHGD---QVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKST-  157 (381)
T ss_dssp             TEEEEEEETT---EEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCE-
T ss_pred             CeEEEEeeCC---EEEEE-eCCCEEEEEeeccc--cccccccccccccceecCC---ceeEEEecCCCEEEEEeccCcc-
Confidence            5788899743   34433 45678888877654  2333334456788888887   4566677789999999987321 


Q ss_pred             CCCCCce----EeccCCCCEEEEEEcCCCCCEEEEE
Q 010997          360 GVGSPIN----KFEGHSAAVLCVQWSPDKSSVFGSS  391 (496)
Q Consensus       360 ~~~~~~~----~~~~h~~~i~~l~~sp~~~~llas~  391 (496)
                         ..+.    .+. -.+.+.+++|++.+..++ ++
T Consensus       158 ---~~~~~~v~~~~-~~~~~~~v~ws~kgkq~v-~~  188 (381)
T d1xipa_         158 ---KQLAQNVTSFD-VTNSQLAVLLKDRSFQSF-AW  188 (381)
T ss_dssp             ---EEEEESEEEEE-ECSSEEEEEETTSCEEEE-EE
T ss_pred             ---ccccCCcceEE-ecCCceEEEEeCCcEEEE-Ee
Confidence               1111    111 135577788887776543 44

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.03  E-value=4.1  Score=36.64  Aligned_cols=247  Identities=9%  Similarity=-0.007  Sum_probs=120.3

Q ss_pred             eeEEEecCCCCcEEE-EEeCCC----cEEEEeCCCCCCccccCCCCCCCCc-eEEecCCCCcceeeeecCCCCceEEecC
Q 010997          143 VNRIRELPQNTKIVA-THTDSP----DVLIWDVEAQPNRHAVLGATNSRPD-LILTGHQDNAEFALAMCPTEPYVLSGGK  216 (496)
Q Consensus       143 V~~l~~~p~~~~~la-t~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~-~~l~~h~~~~v~~l~~~p~~~~l~sg~~  216 (496)
                      +..++++| +++++| +-+..|    .|+++|+.++.            .+ ..+..-   ....++|.+++..|+-...
T Consensus       127 ~~~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~tg~------------~~~~~i~~~---~~~~~~W~~D~~~~~Y~~~  190 (430)
T d1qfma1         127 LRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAK------------ELPDVLERV---KFSCMAWTHDGKGMFYNAY  190 (430)
T ss_dssp             EEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTE------------EEEEEEEEE---CSCCEEECTTSSEEEEEEC
T ss_pred             ecceEecC-CCCEEEEEeccccCchheeEEeccCcce------------ecccccccc---cccceEEcCCCCEEEEEEe
Confidence            33456788 666665 444444    79999999982            11 122211   1246889999886654322


Q ss_pred             C----------------CcEEEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCC--
Q 010997          217 D----------------KSVVLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHE--  278 (496)
Q Consensus       217 D----------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--  278 (496)
                      |                ..|..|.+.+...                                      .....+....  
T Consensus       191 ~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~--------------------------------------~d~~v~~e~d~~  232 (430)
T d1qfma1         191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQS--------------------------------------EDILCAEFPDEP  232 (430)
T ss_dssp             CCCSSCCSSSCCCCCCCCEEEEEETTSCGG--------------------------------------GCEEEECCTTCT
T ss_pred             ccccCcccccccccCCcceEEEEECCCCcc--------------------------------------ccccccccccCC
Confidence            2                2455665543221                                      1112333222  


Q ss_pred             CceeEEEEccCCCceEEEEc--CCCe--EEEEEccCCCcc------ceeeeccCCCCeEEEEecCCCCcEEEEEc---CC
Q 010997          279 DTVEDVTFCPSSAQEFCSVG--DDSC--LILWDARVGTSP------VIKVEKAHDADLHCVDWNPLDDNLILTGS---AD  345 (496)
Q Consensus       279 ~~v~~l~~~~~~~~~l~s~~--~dg~--i~iwd~~~~~~~------~~~~~~~~~~~v~~i~~sp~~~~~l~sgs---~d  345 (496)
                      ..+..+..++++..++++..  .++.  +.+.|+......      .............-+...  ++.+++...   .+
T Consensus       233 ~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Tn~~a~~  310 (430)
T d1qfma1         233 KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNE--GTVFTFKTNRHSPN  310 (430)
T ss_dssp             TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEE--TTEEEEEECTTCTT
T ss_pred             ceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEecC--CceeecccCccccc
Confidence            24566777888854444432  2333  444455443211      111222222333333332  333444332   24


Q ss_pred             CcEEEEeCCCCCCCCCCCCceEe-ccCCCCEEEEEEcCCCCCEEEEEeCCC--cEEEEECCCCCcccCCCCCCCCCCCee
Q 010997          346 NSVRMFDRRNLTSNGVGSPINKF-EGHSAAVLCVQWSPDKSSVFGSSAEDG--LLNIWDYEKVGKKVEQGPRTTNYPAGL  422 (496)
Q Consensus       346 g~i~iwd~~~~~~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~llas~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~  422 (496)
                      +.|...++....    ......+ ..+...+..-.+...+.+|+++.-.++  .|+++++.....             ..
T Consensus       311 ~~L~~~~~~~~~----~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~-------------~~  373 (430)
T d1qfma1         311 YRLINIDFTDPE----ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL-------------LK  373 (430)
T ss_dssp             CEEEEEETTBCC----GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE-------------EE
T ss_pred             ceeEEecCCCCc----cccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcE-------------EE
Confidence            677777777632    1222333 334555655455555555665655564  478888876311             11


Q ss_pred             EEEecCCCCCcceEEecCCCCcEEEEecCCCCCCCCCCeEEEeecC
Q 010997          423 FFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDSTGGGGTLQIWRMS  468 (496)
Q Consensus       423 ~~~~~~h~~~V~~~~~~p~~~~l~~s~s~d~~sgg~Dg~i~iw~~~  468 (496)
                      +  ...-.+.|..+...++...+.++.+.    =-.=.++.-+|+.
T Consensus       374 ~--~~~~~~sv~~~~~~~~~~~~~~~~ss----~~tP~~~y~~Dl~  413 (430)
T d1qfma1         374 I--FPLEVGSVVGYSGQKKDTEIFYQFTS----FLSPGIIYHCDLT  413 (430)
T ss_dssp             E--ECCCSSEEEEEECCTTCSEEEEEEEC----SSCCCEEEEEETT
T ss_pred             e--cCCCCceEeeccCCCCCCEEEEEEcC----CCCCCeEEEEECC
Confidence            1  11122345555555555555555442    1123567777776

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.84  E-value=4.6  Score=35.06  Aligned_cols=126  Identities=8%  Similarity=0.123  Sum_probs=73.8

Q ss_pred             CeEEEEe--cCCCCc-EEEEEcCCCcEEEEeCCCCCCC-CCCCCceEeccCCCCEEEEEEcCCCCCEEEEEeCCCcEEEE
Q 010997          325 DLHCVDW--NPLDDN-LILTGSADNSVRMFDRRNLTSN-GVGSPINKFEGHSAAVLCVQWSPDKSSVFGSSAEDGLLNIW  400 (496)
Q Consensus       325 ~v~~i~~--sp~~~~-~l~sgs~dg~i~iwd~~~~~~~-~~~~~~~~~~~h~~~i~~l~~sp~~~~llas~~~dg~i~iw  400 (496)
                      .+..+|+  +|.++. ++++...+|.+..|.+...... .....++++. -...+-.|.+.+....|+ .+-++..|..+
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Ly-isEE~~Giw~~  206 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLY-IAEEDEAIWKF  206 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEE-EEETTTEEEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEE-EecCccceEEE
Confidence            4566666  674554 5666777899988877432211 0123445554 356788999999888766 66666555445


Q ss_pred             ECCCCCcccCCCCCCCCCCCeeEEEecC--CCCCcceEEecC--C-CCcEEEEecCCCCCCCCCCeEEEeecCC
Q 010997          401 DYEKVGKKVEQGPRTTNYPAGLFFQHAG--HRDKVVDFHWNA--S-DPWTVVSVSDDCDSTGGGGTLQIWRMSD  469 (496)
Q Consensus       401 d~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~~~p--~-~~~l~~s~s~d~~sgg~Dg~i~iw~~~~  469 (496)
                      ++.....          ....++....+  ....+-.++.-.  + ..+++||...+       ++..||+...
T Consensus       207 ~a~~~~~----------~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~-------n~f~vydr~~  263 (353)
T d1h6la_         207 SAEPDGG----------SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN-------SSYAIYERQG  263 (353)
T ss_dssp             ESSTTSC----------SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG-------TEEEEEESST
T ss_pred             EeccCCC----------ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC-------CeEEEEecCC
Confidence            5432111          12233333322  345666666432  2 34788876554       9999999864

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.66  E-value=8.2  Score=36.08  Aligned_cols=20  Identities=10%  Similarity=0.197  Sum_probs=16.8

Q ss_pred             eEEEEcCCCeEEEEEccCCC
Q 010997          293 EFCSVGDDSCLILWDARVGT  312 (496)
Q Consensus       293 ~l~s~~~dg~i~iwd~~~~~  312 (496)
                      .++.++.+|.+.++|..+++
T Consensus       318 ~v~~~~k~G~l~vlDr~tG~  337 (571)
T d2ad6a1         318 LLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCC
T ss_pred             ceeeccccceEEEEecCCCc
Confidence            46778889999999988876

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.50  E-value=8.2  Score=33.41  Aligned_cols=123  Identities=10%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             ceeEEEE--ccCCC-ceEEEEcCCCeEEEEEccCCCc-----cceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEE
Q 010997          280 TVEDVTF--CPSSA-QEFCSVGDDSCLILWDARVGTS-----PVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMF  351 (496)
Q Consensus       280 ~v~~l~~--~~~~~-~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iw  351 (496)
                      .+..+|+  ++... .+++....+|.+..|.+.....     ..++.+ .-...+-.+.+++ ....|..+-.+.-|..+
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvDd-e~~~LyisEE~~Giw~~  206 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAADD-EYGSLYIAEEDEAIWKF  206 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEET-TTTEEEEEETTTEEEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEeC-CCCcEEEecCccceEEE
Confidence            4667777  55443 3566777889999887743221     122233 3456788899998 66777777777666666


Q ss_pred             eCCCCCCCCCCCCceEecc--CCCCEEEEEEcC--C-CCCEEEEEeCCCcEEEEECCCC
Q 010997          352 DRRNLTSNGVGSPINKFEG--HSAAVLCVQWSP--D-KSSVFGSSAEDGLLNIWDYEKV  405 (496)
Q Consensus       352 d~~~~~~~~~~~~~~~~~~--h~~~i~~l~~sp--~-~~~llas~~~dg~i~iwd~~~~  405 (496)
                      +..-... .....+....+  ....+-.|+.-.  + ..+|+||.-.+++..|||....
T Consensus       207 ~a~~~~~-~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         207 SAEPDGG-SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             ESSTTSC-SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EeccCCC-ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            6543211 11122222222  355677777543  3 3378877777899999998763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.37  E-value=2  Score=40.62  Aligned_cols=81  Identities=14%  Similarity=0.125  Sum_probs=47.3

Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCC-CEEEE
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSA-AVLCV  378 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~i~~l  378 (496)
                      .|.|.-+|+.+++  ..-.. .......+-...- .+.++++|+.||.++.+|.++      ++.+-+++--.. .-.-+
T Consensus       443 ~G~l~AiD~~TG~--~~W~~-~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~t------Ge~lW~~~l~~~~~a~P~  512 (571)
T d2ad6a1         443 MGQIRAFDLTTGK--AKWTK-WEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKD------GKELWNFKMPSGGIGSPM  512 (571)
T ss_dssp             CEEEEEECTTTCC--EEEEE-EESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCE
T ss_pred             cccEEEeccCCCc--eeeEc-CCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCC------CcEEEEEECCCCceecce
Confidence            3678888988887  22222 1111111111111 466788899999999999999      888877753221 11124


Q ss_pred             EEcCCCCCEEEE
Q 010997          379 QWSPDKSSVFGS  390 (496)
Q Consensus       379 ~~sp~~~~llas  390 (496)
                      .|..+|+..++.
T Consensus       513 ty~~dGkqYi~v  524 (571)
T d2ad6a1         513 TYSFKGKQYIGS  524 (571)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EEEECCEEEEEE
Confidence            455577643333

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.99  E-value=12  Score=34.98  Aligned_cols=69  Identities=9%  Similarity=0.094  Sum_probs=38.5

Q ss_pred             CcEEEEEeCCCcEEEEeCCCCCCccccCCCCCCCCceEEecCCCCcceeeeecC--CCCceEEec------CCCcEEEEe
Q 010997          153 TKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCP--TEPYVLSGG------KDKSVVLWS  224 (496)
Q Consensus       153 ~~~lat~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~l~~h~~~~v~~l~~~p--~~~~l~sg~------~Dg~i~iwd  224 (496)
                      +.+|+.++.|+.|.-.|..+++            .+..+.......-..+.-.|  .+..++.|.      ..|.|+-+|
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~------------~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~D  188 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGE------------TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYD  188 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCC------------EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCc------------eeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEE
Confidence            3467788889999888988883            23332211000011111122  133455543      248899999


Q ss_pred             cCCcccccc
Q 010997          225 IQDHITSSA  233 (496)
Q Consensus       225 ~~~~~~~~~  233 (496)
                      +.+++....
T Consensus       189 a~TG~~~W~  197 (596)
T d1w6sa_         189 VKTGEQVWR  197 (596)
T ss_dssp             TTTCCEEEE
T ss_pred             CCCCcEEEE
Confidence            998876554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.10  E-value=12  Score=32.82  Aligned_cols=184  Identities=7%  Similarity=0.009  Sum_probs=95.6

Q ss_pred             ceeEEEecCCCCcEEEEEeCCCcEEEEeCCCCCCcccc-CCCCCCCCceEEecCCCCcceeeeecCCCCceEEecCCCcE
Q 010997          142 EVNRIRELPQNTKIVATHTDSPDVLIWDVEAQPNRHAV-LGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSV  220 (496)
Q Consensus       142 ~V~~l~~~p~~~~~lat~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~l~~h~~~~v~~l~~~p~~~~l~sg~~Dg~i  220 (496)
                      ..+-++.++ ...+++.|+.++ ++|-.+..-...... ......++...+    . .|..++|+.+  .|+.. .++.+
T Consensus        38 ~~~LLAVsn-~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p-~v~~vafs~d--~l~v~-~~~~l  107 (381)
T d1xipa_          38 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----P-DVIFVCFHGD--QVLVS-TRNAL  107 (381)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----T-TEEEEEEETT--EEEEE-ESSEE
T ss_pred             ccceEEEeC-CCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----C-CeEEEEeeCC--EEEEE-eCCCE
Confidence            466777787 445777777774 667664322111000 000111222221    1 3778888644  34443 45667


Q ss_pred             EEEecCCccccccCCccccccCCCCCceeccCCCCCCCCCCCCCCCCcCCeeeeecCCCceeEEEEccCCCceEEEEcCC
Q 010997          221 VLWSIQDHITSSATDPATAKSAGSSGSIIKQSPKPGDGNDKAADGPSVGPRGIYNGHEDTVEDVTFCPSSAQEFCSVGDD  300 (496)
Q Consensus       221 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d  300 (496)
                      ..++...-..                                        ......-..++..+.++|.   .++....+
T Consensus       108 ~~~~~~~l~~----------------------------------------~~~~~~~~~~~~~~~~~p~---~~~l~~~~  144 (381)
T d1xipa_         108 YSLDLEELSE----------------------------------------FRTVTSFEKPVFQLKNVNN---TLVILNSV  144 (381)
T ss_dssp             EEEESSSTTC----------------------------------------EEEEEECSSCEEEEEECSS---EEEEEETT
T ss_pred             EEEEeecccc----------------------------------------ccccccccccccceecCCc---eeEEEecC
Confidence            7777653211                                        0111222346777888764   46677778


Q ss_pred             CeEEEEEccCCCccceee---eccCCCCeEEEEecCCCCcEEEEEcCCCcEEE-EeCCCCCCCCCCCCceEeccCCCCEE
Q 010997          301 SCLILWDARVGTSPVIKV---EKAHDADLHCVDWNPLDDNLILTGSADNSVRM-FDRRNLTSNGVGSPINKFEGHSAAVL  376 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~---~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~i-wd~~~~~~~~~~~~~~~~~~h~~~i~  376 (496)
                      |.+.++++.......+..   ...-...+.+++|++ .+..++++..++ ..+ -++..      ...+.........|.
T Consensus       145 ~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~-kgkq~v~~~g~~-~q~k~~i~~------~~~~~~p~~~~~~v~  216 (381)
T d1xipa_         145 NDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKD-RSFQSFAWRNGE-MEKQFEFSL------PSELEELPVEEYSPL  216 (381)
T ss_dssp             SEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETT-SCEEEEEEETTE-EEEEEEECC------CHHHHTSCTTTSEEE
T ss_pred             CCEEEEEeccCccccccCCcceEEecCCceEEEEeC-CcEEEEEeCCCc-eeeccCCCC------ccccCCCcCCCccee
Confidence            999999998876211110   012236678888888 677777764332 211 12222      111111112344678


Q ss_pred             EEEEcCCCCC
Q 010997          377 CVQWSPDKSS  386 (496)
Q Consensus       377 ~l~~sp~~~~  386 (496)
                      +|.|-.+..+
T Consensus       217 sI~WL~~~~F  226 (381)
T d1xipa_         217 SVTILSPQDF  226 (381)
T ss_dssp             EEEESSSSEE
T ss_pred             EEEEecCceE
Confidence            8999876653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.76  E-value=8.2  Score=36.19  Aligned_cols=83  Identities=23%  Similarity=0.304  Sum_probs=50.1

Q ss_pred             CCeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEeccCCCC-EEEE
Q 010997          300 DSCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEGHSAA-VLCV  378 (496)
Q Consensus       300 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-i~~l  378 (496)
                      .|.|.-+|+.+++  ..-.... ..++..-..+. .+.++++|+.||.++.+|.++      ++.+-+++..... -.-+
T Consensus       465 ~G~l~AiD~~TG~--i~W~~~~-~~p~~~g~lst-agglVF~Gt~dg~l~A~Da~T------Ge~LW~~~~~~~~~~~P~  534 (582)
T d1flga_         465 VGSLRAMDPVSGK--VVWEHKE-HLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKS------GKELWKFQTGSGIVSPPI  534 (582)
T ss_dssp             SEEEEEECTTTCC--EEEEEEE-SSCCCSCCEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCSCCE
T ss_pred             CCeEEEEcCCCCc--EEeecCC-CCCCccceeEE-cCCeEEEeCCCCeEEEEECCC------CcEeEEEECCCCccccCE
Confidence            4678888988887  3333221 12222111222 567888899999999999999      8999887642221 1124


Q ss_pred             EEcCCCCC-EEEEEe
Q 010997          379 QWSPDKSS-VFGSSA  392 (496)
Q Consensus       379 ~~sp~~~~-llas~~  392 (496)
                      .|..+|+. |++.++
T Consensus       535 ty~~~G~qYv~i~ag  549 (582)
T d1flga_         535 TWEQDGEQYLGVTVG  549 (582)
T ss_dssp             EEEETTEEEEEEEEC
T ss_pred             EEEECCEEEEEEEeC
Confidence            56667754 433333

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=83.16  E-value=4.4  Score=38.07  Aligned_cols=60  Identities=15%  Similarity=0.254  Sum_probs=37.9

Q ss_pred             CeEEEEEccCCCccceeeeccCCCCeEEEEecCCCCcEEEEEcCCCcEEEEeCCCCCCCCCCCCceEecc
Q 010997          301 SCLILWDARVGTSPVIKVEKAHDADLHCVDWNPLDDNLILTGSADNSVRMFDRRNLTSNGVGSPINKFEG  370 (496)
Q Consensus       301 g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~  370 (496)
                      |.|.-||+.+++  .+-... +..+...=..+- .+.++++|+.||.++.+|.++      ++.+-++..
T Consensus       457 G~l~AiD~~tGk--~~W~~~-~~~p~~gg~lst-agglVF~G~~dg~l~A~Da~T------Ge~LW~~~~  516 (573)
T d1kb0a2         457 GRLLAWDPVAQK--AAWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAAT------GEKLWEAPT  516 (573)
T ss_dssp             EEEEEEETTTTE--EEEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTT------CCEEEEEEC
T ss_pred             ccEEEeCCCCCc--eEeeec-CCCCCCCceEEE-cCCEEEEECCCCeEEEEECCC------CcEeEEEEC
Confidence            466677777766  222221 111111111122 567888899999999999999      888888764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.45  E-value=10  Score=31.09  Aligned_cols=26  Identities=8%  Similarity=-0.167  Sum_probs=14.4

Q ss_pred             CcEEEEecCCCCCCCCCCeEEEeecCCC
Q 010997          443 PWTVVSVSDDCDSTGGGGTLQIWRMSDL  470 (496)
Q Consensus       443 ~~l~~s~s~d~~sgg~Dg~i~iw~~~~~  470 (496)
                      ..+++.++.+  ....-..|.+||+...
T Consensus       243 ~~l~v~GG~~--~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         243 GRIYVLGGYD--GHTFLDSVECYDPDTD  268 (288)
T ss_dssp             TEEEEECCBC--SSCBCCEEEEEETTTT
T ss_pred             CEEEEEecCC--CCeecceEEEEECCCC
Confidence            3455544433  2223345889998854

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.96  E-value=18  Score=32.42  Aligned_cols=61  Identities=8%  Similarity=0.129  Sum_probs=41.3

Q ss_pred             eeeecCCCceeEEEEccCCCceEEEEcCCCeEEEEEccCCCccceeee------ccCCCCeEEEEecC
Q 010997          272 GIYNGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGTSPVIKVE------KAHDADLHCVDWNP  333 (496)
Q Consensus       272 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~v~~i~~sp  333 (496)
                      ..+...-...++|+|.|++ .+|++--..|.|++++..++....+...      .........|+|+|
T Consensus        20 ~~ia~~L~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          20 KVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             EEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             EEEECCCCCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence            3444445677899999999 6777765679999998777653222211      12235678999998