Citrus Sinensis ID: 010998

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MGTLKPPTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKDNVSKKIVFSDSSPPSLKNDEVSGEVESKNGVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQTI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccccEEccccccccccccccccccccccccccHHcHHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEccccHHHHHHccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHcccccccHHHHHcccccccccHHHHHHHHHHHHHcccEEEEEccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEEccccccccccccccEEEEEccEEEccccccccccEEEEEEEEEccccEEEEEEEEEcccEEEccEEEEEccccccEEEEEEccccccccccccccccccEEEEEEEEEccccccccccccccccccccEEEEEEccccEEEEEcccccccEEEcccEEEEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccccEEEEccccccccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEccccccHHHHHHHcccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHcHHccccHHHHHHHHHHHHHcccEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEccccccccEcccccccEEEEEEEEEEEEccccccHHcEEEEEEEcccccEEEEEEEEEcccEEEccEEEEEEEcccccEEEEEcccccccccccccccccccEEEEEEEccccccccccccEEEEccccccEEEEcccccEEEEEEcccccccccccEEEEEEEEEccccEEEEcccccHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mgtlkpptlptrthilkapllhstfnpqlhTLFNRCITlsstiscklrtsqdvkkkkdnvskkivfsdssppslkndevsgeveskngviglvkRLPRRVLAALSNLPLAIGEMAAIAALMALGTAieqgevpdfyfqkypednpvfgfFTWRWILTLgfdhmfsspIFLGLLVMMGLSLMactyttqipLVKVARRWSFLHSAEAIRKqefsdtlprasiQDLGVILMGAGYevflkgpslyafkglvgrfapIGVHLAMLLIMAGgtlsatgsfrgsvtvpqglnfvvgdvlgpngflstptdafsteVHVNKFYMDyydsgevkqfhsdlslfdiggkevmrktisvndplryggitiyqtdwSFSALQVLkndegpfnlamaplkvngdkklfgtflplgdvnspnvkGISMLARDLQSIVIydqegkftgvrrpnsklpididgtKIVIVDAIgstgldlktdpgvpivyAGFGALMLTTCISflshtqti
Flexible Loop (DISEMBL)
mgtlkpptlptrTHILKAPLLHSTFNPQLHTLFNRCITLSStiscklrtsqdvkkkkdnvskkivfsdssppslkndevsgeveskngviglvkrlpRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAirkqefsdtlpraSIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKtisvndplrYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDqegkftgvrrpnsklpididgTKIVIVDAIGstgldlktdpGVPIVYAGFGALMLTTCISFLSHTQTI
Low Complexity Region (SEG)
MGTLKPPTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQdvkkkkdnvskkIVFSDSSPPSLKNDEVSGEVESKNGVIGLVKRLPRRVLAALSNLPlaigemaaiaalmalgtaiEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFlgllvmmglslmACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQTI
Disordered region (IsUnstruct)
************THILKAPLLHSTFNPQLHTLFNRCITLSSTISCKL****************************************GVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLS*****
Disordered Region (DISOPRED)
*******TLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSS*****************************************************RLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSF*************DTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNS**********RDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQTI
Disordered Region (DISEMBL)
MGTLKPPTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLR************SKKIVFSD***************ESKNGVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQTI
Disordered Region (DISPRO)
*GTLKPPTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKDNVSKKIVFSDSSPPSLKNDEVSGEVESKNGVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHT***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTLKPPTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKDNVSKKIVFSDSSPPSLKNDEVSGEVESKNGVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQTI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
Q9XIA4	547	Cytochrome c biogenesis p	yes	no	0.957	0.868	0.719	0.0
Q75KA9	564	Cytochrome c biogenesis p	yes	no	0.872	0.767	0.751	0.0
Q8GTZ9	613	Cytochrome c biogenesis p	N/A	no	0.907	0.734	0.425	1e-100
B1WRN9	451	Cytochrome c biogenesis p	yes	no	0.786	0.864	0.413	4e-86
Q2JXK6	478	Cytochrome c biogenesis p	yes	no	0.760	0.788	0.417	8e-84
Q118K5	472	Cytochrome c biogenesis p	yes	no	0.818	0.860	0.407	3e-81
O68616	462	Cytochrome c biogenesis p	yes	no	0.786	0.844	0.4	7e-81
P73912	458	Cytochrome c biogenesis p	N/A	no	0.731	0.792	0.411	3e-80
B0JHI7	447	Cytochrome c biogenesis p	yes	no	0.731	0.812	0.414	4e-80
Q2JNP5	469	Cytochrome c biogenesis p	yes	no	0.762	0.805	0.401	5e-80

>sp|Q9XIA4|CCS1_ARATH Cytochrome c biogenesis protein CCS1, chloroplastic OS=Arabidopsis thaliana GN=CCS1 PE=2 SV=1

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/495 (71%), Positives = 408/495 (82%), Gaps = 20/495 (4%)

Query: 15  ILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKD---NVSKKIVFSDSSP 71
           IL    +H    P  +    R ++L +  +CKL+  QD  ++     N++K I  SDS+P
Sbjct: 9   ILHFSKIHPFSRPSSYLCRTRNVSLIT--NCKLQKPQDGNQRSSSNRNLTKTISLSDSAP 66

Query: 72  PSLKNDEVSGEVESKNGVIG------------LVKRLPRRVLAALSNLPLAIGEMAAIAA 119
           P     E +G+   K G  G             +K LPR+VL+ LSNLPLAI EM  IAA
Sbjct: 67  PV---TEETGDGIVKGGGNGGGGGGDGRGGLGFLKILPRKVLSVLSNLPLAITEMFTIAA 123

Query: 120 LMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLS 179
           LMALGT IEQGE PDFYFQKYPEDNPV GFFTWRWI TLG DHM+S+PIFLG+LV++  S
Sbjct: 124 LMALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAPIFLGMLVLLAAS 183

Query: 180 LMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKG 239
           LMACTYTTQIPLVKVARRWSF+ S EAI+KQEF+DTLPRASIQDLG+ILMG G+EVF+KG
Sbjct: 184 LMACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMILMGDGFEVFMKG 243

Query: 240 PSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGF 299
           PSLYAFKGL GRFAPIGVH+AMLLIM GGTLSATGSFRGSVTVPQGLNFV+GDVL P GF
Sbjct: 244 PSLYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDVLAPIGF 303

Query: 300 LSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGI 359
            S PTDAF+TEVHVN+F MDYYDSGEV QFHSDLSL D+ GKEV+RKTISVNDPLRYGG+
Sbjct: 304 FSIPTDAFNTEVHVNRFTMDYYDSGEVSQFHSDLSLRDLNGKEVLRKTISVNDPLRYGGV 363

Query: 360 TIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLAR 419
           T+YQTDWSFSALQV K+ EGPFNLAMAP+K+NGDKKL+GTFLP+GD N+PNVKGISMLAR
Sbjct: 364 TVYQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTNAPNVKGISMLAR 423

Query: 420 DLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFG 479
           DLQSIV+YD +GKF G+RRP+SKLPI+I+G KIVI DAIGSTGL+LKTDPGVP+VYAGFG
Sbjct: 424 DLQSIVVYDLDGKFAGIRRPSSKLPIEINGMKIVIEDAIGSTGLELKTDPGVPVVYAGFG 483

Query: 480 ALMLTTCISFLSHTQ 494
           ALMLTTCIS+LSH+Q
Sbjct: 484 ALMLTTCISYLSHSQ 498

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
Arabidopsis thaliana (taxid: 3702)

>sp|Q75KA9|CCS1_ORYSJ Cytochrome c biogenesis protein CCS1, chloroplastic OS=Oryza sativa subsp. japonica GN=CCS1 PE=2 SV=1

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/446 (75%), Positives = 378/446 (84%), Gaps = 13/446 (2%)

Query: 62  KKIVFSDSSPPSLKNDEVSGEV-------------ESKNGVIGLVKRLPRRVLAALSNLP 108
           K++VF D++PP  +     G                 +N  +GLV+RL +R L+ LSNLP
Sbjct: 67  KQVVFFDAAPPVSQRGGGGGGEGEGEGEGEGKVARRKENAALGLVRRLTKRTLSLLSNLP 126

Query: 109 LAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPI 168
           LAI EM AIAALMALGT I+QGE P +YF+K+PEDNPVFGF TWRWILT GFDHMFSSP+
Sbjct: 127 LAISEMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDHMFSSPV 186

Query: 169 FLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVIL 228
           FLGLL ++  SLMACTYTTQIP+VKVARRWSF+HSA +IRKQEF+++LPRASIQDLGVIL
Sbjct: 187 FLGLLALLAASLMACTYTTQIPIVKVARRWSFMHSAGSIRKQEFAESLPRASIQDLGVIL 246

Query: 229 MGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNF 288
           MG GYEVF KGPSLYAFKGL GRFAPIGVH+AM+ IMAG TLSATGSF+GSV VPQGLNF
Sbjct: 247 MGYGYEVFTKGPSLYAFKGLAGRFAPIGVHIAMIFIMAGATLSATGSFKGSVDVPQGLNF 306

Query: 289 VVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTI 348
           V+GDV+ P G LS   D F+TEVHVN+FYM+YYDSGEV QF+SDLSLFD+ GKEVMRKTI
Sbjct: 307 VIGDVMKPKGVLSFVPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFDLDGKEVMRKTI 366

Query: 349 SVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNS 408
            VNDPLRYGG+TIYQTDW FSALQV KN EGPFNLAMAPLK+NGDKKLFGT LPL +  S
Sbjct: 367 KVNDPLRYGGVTIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTLLPLENSGS 426

Query: 409 PNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTD 468
            NVKGISMLARDLQSIV+YDQEGKF GVRRP+SKLPI+IDG +IVI DAIGSTGLDLKTD
Sbjct: 427 SNVKGISMLARDLQSIVLYDQEGKFVGVRRPSSKLPIEIDGNEIVIEDAIGSTGLDLKTD 486

Query: 469 PGVPIVYAGFGALMLTTCISFLSHTQ 494
           PG+PIVYAGFGALMLTTCIS+LSH+Q
Sbjct: 487 PGIPIVYAGFGALMLTTCISYLSHSQ 512

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GTZ9|CCS1_CHLRE Cytochrome c biogenesis protein CCS1, chloroplastic OS=Chlamydomonas reinhardtii GN=CCS1 PE=1 SV=2

 Score =  366 bits (940), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/520 (42%), Positives = 294/520 (56%), Gaps = 70/520 (13%)

Query: 43  ISCKLRTSQDVKKKKDNVSKKIVFSDSSP-------------PSLKNDEVSGEVESKNGV 89
           + C  +  Q   KKK NV+ K+   ++ P             PS  +D  S       G 
Sbjct: 36  VRCFAKGGQPGDKKKLNVTDKLRLGNTPPTLDVLKAPRPTDAPSAIDDAPSTSGLGLGGG 95

Query: 90  IGLVKRLP---------RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKY 140
           +   + L          RR++  LS+LP AI  MA IA L  LGT I Q +  ++Y   Y
Sbjct: 96  VASPRTLVQSNAVQVAWRRLMKELSSLPRAIAIMALIAVLSGLGTFIPQNKSIEYYLVNY 155

Query: 141 PED-NPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWS 199
           P+    V GF T   ILTL  DH++++  F   + ++  SL ACTYT Q P VKVA+RW 
Sbjct: 156 PDGAEKVLGFLTGDLILTLQLDHIYTADYFYLSMGLLAASLAACTYTRQWPAVKVAQRWR 215

Query: 200 FLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHL 259
           FL   +++ KQ  ++ LP A + DLG IL+  GY+VF+K  SLY FKGL G+  PIGVH 
Sbjct: 216 FLTQPKSLLKQGRTEVLPNARVSDLGAILLQRGYQVFVKDGSLYGFKGLAGKLGPIGVHA 275

Query: 260 AMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMD 319
           A+LL + G   S  G+ +G+V  P+G +F V   L P+  +++   + S  +HVNKF +D
Sbjct: 276 ALLLCLFGTAWSGFGTLKGNVMCPEGQDFQVASFLQPSSPIASMPASASNVIHVNKFTID 335

Query: 320 YYDSGEVKQFHSDLSLFD--IGGKEVMRKTISVNDPLRYGGITIYQTDWSFSA--LQVLK 375
           Y   G V QF+SDLSL D   GGKE+MRKTISVNDP R+ G+T+YQTDWS SA  L+VL 
Sbjct: 336 YRPDGSVAQFYSDLSLLDPAQGGKEMMRKTISVNDPFRFNGVTMYQTDWSLSAVTLRVLG 395

Query: 376 ND-----------------------------------EGPFNLAMAPL--KVNGDKKLFG 398
            D                                      FNL MA L  K     +L+ 
Sbjct: 396 QDAPLARAAQAAEAQAAASTSGPTSSASSTSDALPQQRTAFNLPMASLEGKPGVAGRLWA 455

Query: 399 TFLPLG----DVNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVI 454
           TFLPL     D ++P  KGIS+LARD QS+V YD +G+F GVRRP S  PI+++G  +V+
Sbjct: 456 TFLPLAEPGQDGSAP--KGISILARDPQSVVFYDAKGQFVGVRRPGSGKPIEVEGLALVV 513

Query: 455 VDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQ 494
            D  G+TGL+LK+DPGVP VYAGFG LM+TT IS+LSH+Q
Sbjct: 514 EDVTGATGLELKSDPGVPAVYAGFGGLMVTTLISYLSHSQ 553

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|B1WRN9|CCS1_CYAA5 Cytochrome c biogenesis protein CcsB OS=Cyanothece sp. (strain ATCC 51142) GN=ccsB PE=3 SV=1

 Score =  319 bits (817), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 165/399 (41%), Positives = 244/399 (61%), Gaps = 9/399 (2%)

Query: 98  RRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILT 157
           R+++  +++L LAI  + AIA     GT IEQGE   FY Q YPED  +FGF TW+ IL 
Sbjct: 21  RQLIKIVADLRLAIVLLLAIALFSISGTVIEQGETISFYQQNYPEDPALFGFLTWKVILI 80

Query: 158 LGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP 217
           LG +H++++  FL LLV+ G SL  CT+T Q P +K AR+W+F   A    K   S  L 
Sbjct: 81  LGLNHVYTTWWFLSLLVLFGTSLTTCTFTRQFPALKAARKWNFYQKARQFEKLALSTELA 140

Query: 218 RASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFR 277
              ++ +  +L   GY+ F +  ++YA KG++G+  PI VH AML+I+ G    A   F 
Sbjct: 141 INDLKFVNNLLEQKGYKTFQENQAIYARKGIIGKIGPIVVHAAMLIILGGAIWGALTGFL 200

Query: 278 GSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFD 337
               VP G  F V +++   G LS P       + VN+F++DY   G + QF+SDLS+ +
Sbjct: 201 AQAMVPTGSEFKVNNII-EAGPLSQPQIPKDWGIRVNRFWIDYTPDGTIDQFYSDLSVIN 259

Query: 338 IGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLF 397
             G+E+  KTI VN+PLRY G+T YQTDW  + +Q   N+   F L MA L  NG+ +++
Sbjct: 260 NDGEELKHKTIYVNEPLRYHGVTFYQTDWGIAGVQAQVNNSPIFQLPMALLNTNGNGRIW 319

Query: 398 GTFLPLGDVNSPNV-KGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIV 455
           GT++P      P++ +G+S+LA+DLQ ++++YDQ+G      RP   + +DI+G ++ I 
Sbjct: 320 GTWIP----TKPDLSEGVSLLAKDLQGTMMVYDQKGDLYSAVRPG--MILDINGVRLKIY 373

Query: 456 DAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQ 494
             IGSTGL +K DPG+P VY GFG LM+   +S++SH+Q
Sbjct: 374 QLIGSTGLQIKADPGIPFVYTGFGLLMMGVIMSYVSHSQ 412

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Cyanothece sp. (strain ATCC 51142) (taxid: 43989)

>sp|Q2JXK6|CCS1_SYNJA Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain JA-3-3Ab) GN=ccsB PE=3 SV=1

 Score =  311 bits (797), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 165/395 (41%), Positives = 237/395 (60%), Gaps = 18/395 (4%)

Query: 110 AIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIF 169
           AIG   AIA L A+GT IEQ E   FY   YPE   +FGF TWR IL LG DH++ +  F
Sbjct: 33  AIGLFLAIALLSAVGTVIEQEETVAFYQAHYPEHPALFGFLTWRLILKLGLDHVYRTSWF 92

Query: 170 LGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILM 229
           L LL++ G SL AC+ T Q P++KVARRWS+L    + ++  F   LP+ S+Q L   L 
Sbjct: 93  LALLILFGSSLAACSLTRQWPMLKVARRWSYLTRPHSFQRLPFWTYLPQRSLQGLPQRLR 152

Query: 230 GAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFV 289
             GY VF  G  LYA KGL+GRF PI VH+++LLI+ G    +   F+    +P G    
Sbjct: 153 QRGYAVFQDGSRLYARKGLIGRFGPILVHVSLLLILLGAIWGSLAGFKAQALIPSGSVAA 212

Query: 290 VGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTIS 349
           +  V G       PT     ++ VN+F++DY   G VKQF+SDLS+ D GG+EV R+TIS
Sbjct: 213 IEQVTGAGDLAHLPT----WQIRVNRFWIDYAPDGRVKQFYSDLSILD-GGQEVKRQTIS 267

Query: 350 VNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSP 409
           VN PL Y G+T+YQ DWS  ++++  N+  PF + + P+      KL+G F+P      P
Sbjct: 268 VNHPLSYRGVTLYQADWSIDSIRIRLNNSPPFQIPVVPVPTQAGSKLWGAFVP----TRP 323

Query: 410 NV-KGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDI-------DGTKIVIVDAIGS 460
           ++ +G+++L  DLQ + ++YD +G++ G  R    L +D        +   + + + IG+
Sbjct: 324 DLSEGLTLLLPDLQGTALLYDTQGQWIGSLRQGMSLALDEVAPQRFPNRLTLHLDEVIGA 383

Query: 461 TGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQT 495
           TGL +K+DPG+P+VY GFG LML   +S+ S++Q 
Sbjct: 384 TGLQIKSDPGIPLVYLGFGLLMLGVAMSYFSYSQV 418

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)

>sp|Q118K5|CCS1_TRIEI Cytochrome c biogenesis protein CcsB OS=Trichodesmium erythraeum (strain IMS101) GN=ccsB PE=3 SV=1

 Score =  302 bits (774), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 169/415 (40%), Positives = 248/415 (59%), Gaps = 9/415 (2%)

Query: 82  EVESKNGVIGLVKRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYP 141
           E   KN +I  ++   R +L  L++L LAI  +  IA     GT IEQGE   FY + YP
Sbjct: 4   EDSDKNSLINPLRIFKREILPLLADLRLAIALLLIIAICSISGTVIEQGESIAFYQENYP 63

Query: 142 EDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFL 201
           E   +FGF TW+ IL L  DH++ +  FL +L++ G SL ACT+T Q+P +K A RW F 
Sbjct: 64  EKPALFGFLTWKVILLLELDHVYRTWWFLSILILFGASLTACTFTRQLPALKSANRWKFY 123

Query: 202 HSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAM 261
           +  +  +    S  +  AS+  L  IL   GY+   +G  LY  KG++G+  PI VH +M
Sbjct: 124 NKKQQFKNLALSAEIETASLDSLEEILQKRGYKTSKEGDKLYGRKGIIGKVGPIIVHASM 183

Query: 262 LLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYY 321
           L+I+AG  + +   F G   VP G  F V +++   G  +      +  V VN+F++DY 
Sbjct: 184 LIILAGSIIGSMTGFLGQEIVPSGETFQVKNIIDA-GIFAKSQIPKNWSVRVNRFWIDYT 242

Query: 322 DSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPF 381
            SG + QF+SDLS+ D  G+EV RKTI VN P+RY G+T+YQ DW+ +A++V  N    F
Sbjct: 243 PSGGIDQFYSDLSILDKSGEEVDRKTIFVNQPMRYHGVTMYQADWAIAAVKVRVNKSPVF 302

Query: 382 NLAMAPLKVNGDKKLFGTFLPLGDVNSPNV-KGISMLARDLQ-SIVIYDQEGKFTGVRRP 439
            L MA L   G  K++GT++P+     P++ +G+S+LA+DLQ ++++YD  GK     R 
Sbjct: 303 RLPMAQLNTEGGGKIWGTWVPI----KPDLSEGVSLLAKDLQGNVLVYDTSGKLVASVRE 358

Query: 440 NSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQ 494
              + I++ G  + I   IGSTGL +K DPG+PIVY GFG LML+  +S++SH+Q
Sbjct: 359 G--MFIEVSGVTLFIDKIIGSTGLQIKADPGIPIVYLGFGLLMLSVLMSYVSHSQ 411

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

>sp|O68616|CCS1_SYNP2 Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ccsB PE=3 SV=1

 Score =  301 bits (772), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 162/405 (40%), Positives = 242/405 (59%), Gaps = 15/405 (3%)

Query: 96  LPRRV----LAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFT 151
            PR+V    L  +++L +AI  +  I+    LGT IEQG    FY + YPED  + GF +
Sbjct: 15  FPRKVWRTGLKWIADLRVAIALLLLISVFSILGTVIEQGSTIQFYQENYPEDPALLGFLS 74

Query: 152 WRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQE 211
           W+ +L LG DH++++  +L LL+  G+SL+ACT+  Q+P +K AR W++   A    K  
Sbjct: 75  WKVLLGLGLDHVYTTWWYLVLLLAFGVSLIACTFRRQLPALKTARNWNYYSQARQFNKLA 134

Query: 212 FSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLS 271
            S  L   S+Q L   L    Y++F  G  LYA KG+VGR  PI VH+ M++ + G    
Sbjct: 135 LSTELDHGSLQSLKPQLEKKRYKIFQDGEKLYARKGIVGRIGPIIVHIGMIVTLVGSIWG 194

Query: 272 ATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHS 331
           A G F     +P G+NF V +V    G  S     +S  V+VN+F++DY  +G++ QF+S
Sbjct: 195 AFGGFMAQEMIPSGVNFKVNNVF-KAGIFSESDRPWS--VNVNRFWIDYTPTGDIDQFYS 251

Query: 332 DLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVN 391
           DLS+ D  G+E+ RKTISVN PLRY GIT YQT WS   +QV  N+   F L  A +   
Sbjct: 252 DLSVVDGEGQELERKTISVNHPLRYDGITFYQTSWSIGGVQVQLNNSPIFQLPAAQIPTE 311

Query: 392 GDKKLFGTFLPLGDVNSPNVK-GISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDG 449
              KL+G+++P+     P++  G+S+L +DLQ S ++Y+++G+  G  R   +L  D+  
Sbjct: 312 NGAKLWGSWVPI----KPDMSAGVSILMQDLQGSAIVYNEQGELVGAVRVGDRL--DVGD 365

Query: 450 TKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQ 494
             + +VD +GSTGL +K DPGVP+VY GF  +ML   +S++S++Q
Sbjct: 366 ISLKLVDLVGSTGLQIKADPGVPVVYTGFLLVMLGVVMSYVSYSQ 410

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

>sp|P73912|CCS1_SYNY3 Cytochrome c biogenesis protein CcsB OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ccsB PE=1 SV=1

 Score =  299 bits (766), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 227/374 (60%), Gaps = 11/374 (2%)

Query: 124 GTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC 183
           GT IEQGE   FY Q YPED  +FGF +W+ IL LG + ++ +  FLGLL++ G SL AC
Sbjct: 43  GTVIEQGESLSFYQQNYPEDPALFGFLSWQVILQLGLNQVYRTWWFLGLLILFGSSLTAC 102

Query: 184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLY 243
           T+  Q P +K AR W F H     +K   S +LP   I  +  +L   GY++F +G S+Y
Sbjct: 103 TFNRQFPALKAARSWQFYHQPRQFKKLALSFSLPDGDINKIESLLRDRGYKIFQEGDSVY 162

Query: 244 AFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL--GPNGFLS 301
           A KGL+G+  PI VH AML+I+ G    A   F     +P G  F V +++  GP     
Sbjct: 163 ARKGLMGKVGPIIVHGAMLIILGGAIWGALTGFFAQHMIPSGETFQVSNIIEKGPLADSQ 222

Query: 302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITI 361
            P D     + VN+F+++Y ++G + QF+SDLS+ +  G+E+ R+TISVN PLR+ G+T 
Sbjct: 223 IPKD---WGIKVNRFWINYTENGAIDQFYSDLSVVNNQGEELDRQTISVNHPLRHRGVTF 279

Query: 362 YQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDL 421
           YQT+W  + ++V  N+     L MAPL+     +L+G ++P     +   +G ++L +DL
Sbjct: 280 YQTNWGIAGVKVQLNNSPVLQLPMAPLQTANGGQLWGAYIP---TKTDFSEGAALLVKDL 336

Query: 422 Q-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGA 480
           Q +++IYDQEG  T   R  S   ++I+G  I I + +GSTGL +K DPG+P VY GFG 
Sbjct: 337 QGTMIIYDQEGNLTDAVRAGST--VEINGVNITIKELVGSTGLQIKADPGIPFVYLGFGL 394

Query: 481 LMLTTCISFLSHTQ 494
           LM+   +S++SH+Q
Sbjct: 395 LMVGVMMSYVSHSQ 408

Probably not involved in heme transport or reduction as mutants deleted for the first 24 residues cannot be rescued by growth in the presence of heme or reductant.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|B0JHI7|CCS1_MICAN Cytochrome c biogenesis protein CcsB OS=Microcystis aeruginosa (strain NIES-843) GN=ccsB PE=3 SV=1

 Score =  299 bits (765), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 226/374 (60%), Gaps = 11/374 (2%)

Query: 124 GTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC 183
           GT IEQG+   FY   YPE   +FGF TW+ +L LG +H++S+  +L LL++ G SL AC
Sbjct: 45  GTVIEQGQSLSFYQANYPEKPALFGFLTWKVLLLLGLNHVYSTWWYLSLLILFGSSLTAC 104

Query: 184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLY 243
           T+  Q+P +K AR W F   +   +K   S  L   S++ L  +L   GY+VFL+  SLY
Sbjct: 105 TFRRQLPALKAARNWQFYQQSRQFQKLALSAELETGSLESLTPLLEKKGYKVFLENNSLY 164

Query: 244 AFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL--GPNGFLS 301
           A KGL+G+  PI VH AML+I+AG    A   F     V  G +F V +++  GP    S
Sbjct: 165 ARKGLIGKIGPIIVHAAMLIILAGAIWGALTGFFAQEMVASGDSFQVKNIIEAGPLSKNS 224

Query: 302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITI 361
            P D     + VN+F++DY   G+++QF+SDLS+ D  G+E+ RKTI VN PL + G+T 
Sbjct: 225 LPKDW---GIKVNRFWIDYSPKGDIEQFYSDLSVIDNQGQEIDRKTIQVNQPLHHKGVTF 281

Query: 362 YQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDL 421
           YQT W  + ++V  N+     L MA L   G+ +++GT++P     +   +G+S+L RDL
Sbjct: 282 YQTSWGIAGVKVQVNNSPILQLPMASLDTKGNGQIWGTWIP---TKTDLSEGVSLLTRDL 338

Query: 422 Q-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGA 480
           Q ++++YD +G  T   R    +P  I+G  + IV+ +GSTGL +K DPGVPIVY GF  
Sbjct: 339 QGTVIVYDAQGDLTSAVREGMTIP--INGVNLKIVELVGSTGLQIKADPGVPIVYLGFAL 396

Query: 481 LMLTTCISFLSHTQ 494
           LM+   +S+ SH+Q
Sbjct: 397 LMMGVVMSYFSHSQ 410

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

>sp|Q2JNP5|CCS1_SYNJB Cytochrome c biogenesis protein CcsB OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=ccsB PE=3 SV=1

 Score =  298 bits (764), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 158/394 (40%), Positives = 235/394 (59%), Gaps = 16/394 (4%)

Query: 110 AIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIF 169
           AIG + AIA L A GT IEQ E   FY   YPE   +FGF TWR IL+LG DH++ +P F
Sbjct: 33  AIGLLLAIAVLSATGTVIEQEETAAFYQAHYPEHPALFGFLTWRVILSLGLDHVYRTPWF 92

Query: 170 LGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILM 229
           L +L++ G SL AC+ T Q P++K ARRWS+L   ++ ++  F   LP+ S+Q L   L 
Sbjct: 93  LAILILFGSSLAACSLTRQWPMLKRARRWSYLTRPQSFQRLPFRTYLPQQSLQGLPQQLR 152

Query: 230 GAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFV 289
             GY VF +G  LYA KGL+GR  PI VH++MLLI+ G    +   F+    +P G    
Sbjct: 153 RQGYLVFQEGHYLYARKGLIGRIGPILVHVSMLLILLGAIWGSISGFKAQELIPSGGVAS 212

Query: 290 VGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTIS 349
           +  + G           +  ++  N+F++DY   G VKQF+SDLS+ D  G+EV R+TIS
Sbjct: 213 IQHLTGAGDLARAHLPTW--QIRANRFWIDYAADGRVKQFYSDLSILD-QGQEVKRQTIS 269

Query: 350 VNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSP 409
           VN PL Y G+T+YQ DWS  ++++  N+   F + + P++     KL+G F+P      P
Sbjct: 270 VNHPLSYRGVTLYQADWSIDSIRIRINNSPTFQIPVVPVRTEAGNKLWGAFVP----TQP 325

Query: 410 NV-KGISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTK-------IVIVDAIGS 460
           ++ +G+++L  DLQ + ++YD EG++ G  R    L +D    +       + + + IG+
Sbjct: 326 DMSQGLTLLLPDLQGTALLYDTEGQWMGSLRQGMSLALDEVAPQRFPNPLTLYLDEVIGA 385

Query: 461 TGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQ 494
           TGL +K+DPG+P VY GFG LM+   +S+ S++Q
Sbjct: 386 TGLQIKSDPGIPAVYLGFGLLMVGVVMSYFSYSQ 419

Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
255556127	556	conserved hypothetical protein [Ricinus	0.991	0.884	0.780	0.0
225428564	557	PREDICTED: cytochrome c biogenesis prote	0.989	0.881	0.756	0.0
356538823	563	PREDICTED: cytochrome c biogenesis prote	0.981	0.865	0.742	0.0
449506421	560	PREDICTED: cytochrome c biogenesis prote	0.973	0.862	0.757	0.0
449438715	557	PREDICTED: cytochrome c biogenesis prote	0.973	0.867	0.737	0.0
297847228	550	cytochrome c biogenesis protein family [	0.961	0.867	0.722	0.0
18402618	547	cytochrome c biogenesis protein CCS1 [Ar	0.957	0.868	0.719	0.0
242032857	561	hypothetical protein SORBIDRAFT_01g00688	0.872	0.771	0.760	0.0
226528547	549	uncharacterized protein LOC100275725 [Ze	0.872	0.788	0.756	0.0
224103463	432	predicted protein [Populus trichocarpa]	0.768	0.881	0.845	0.0

>gi|255556127|ref|XP_002519098.1| conserved hypothetical protein [Ricinus communis] gi|223541761|gb|EEF43309.1| conserved hypothetical protein [Ricinus communis]

 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/506 (78%), Positives = 446/506 (88%), Gaps = 14/506 (2%)

Query: 1   MGTLKP--PTLPTRTHILK-APLLHST--FNPQLHTLFNRCITLSSTISCKLRTSQDVKK 55
           M TLKP  P+ P +TH +   P ++ST   NPQ+H L NR   LS ++SCKL+TS++V+ 
Sbjct: 1   MKTLKPTKPS-PLKTHFINFHPFINSTIKLNPQIHILCNRR-ALSLSVSCKLKTSKEVEN 58

Query: 56  KKDNVSKKIVFSDSSPPSLKNDEV--SGEVESK-----NGVIGLVKRLPRRVLAALSNLP 108
           K  NVS+KI+ S+S+PP  +      +GE+  K      G +   KRLPR+VL+ LSNLP
Sbjct: 59  KDKNVSRKILLSNSAPPVSEEGGAGNNGEIPDKAAKGGGGPLRFFKRLPRKVLSVLSNLP 118

Query: 109 LAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPI 168
           LAIGEM AIA LMALGT I+QG+ P+ YFQ YPE+NPV GFFTWRWILTLGFDHMFSSP+
Sbjct: 119 LAIGEMFAIAGLMALGTVIDQGQAPEIYFQNYPEENPVLGFFTWRWILTLGFDHMFSSPV 178

Query: 169 FLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVIL 228
           FLG+L ++GLSLMACTYTTQIPLVKVARRW+FLHSAEAIRKQEF+DTLP+ASIQD+GVIL
Sbjct: 179 FLGMLALLGLSLMACTYTTQIPLVKVARRWNFLHSAEAIRKQEFADTLPQASIQDVGVIL 238

Query: 229 MGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNF 288
           MGAGYEVFLKGPSLYAFKGL GRFAPIGVHLAMLLIMAG TL+ATGSFRGSVTVPQGLNF
Sbjct: 239 MGAGYEVFLKGPSLYAFKGLAGRFAPIGVHLAMLLIMAGATLTATGSFRGSVTVPQGLNF 298

Query: 289 VVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTI 348
           VVGDVLGP+GFLSTPT+AF+TEVHVNKFYMDYYDSGEV QF+SDLSL+DI GKEV+RKTI
Sbjct: 299 VVGDVLGPSGFLSTPTEAFNTEVHVNKFYMDYYDSGEVSQFYSDLSLYDIDGKEVLRKTI 358

Query: 349 SVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNS 408
           SVN+PLRYGG TIYQTDWSFSALQ+ KNDEGPFNLAMAPLK+NGDKKLFGTFLP+GDVNS
Sbjct: 359 SVNNPLRYGGFTIYQTDWSFSALQIRKNDEGPFNLAMAPLKINGDKKLFGTFLPVGDVNS 418

Query: 409 PNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTD 468
           PNVKGISMLARDLQSIV+YDQEGKF GVRRPNSKLPIDIDGT+IVI DAIGSTGL+LKTD
Sbjct: 419 PNVKGISMLARDLQSIVLYDQEGKFVGVRRPNSKLPIDIDGTRIVIEDAIGSTGLELKTD 478

Query: 469 PGVPIVYAGFGALMLTTCISFLSHTQ 494
           PGVP+VYAGFGALMLTTCIS+LSH+Q
Sbjct: 479 PGVPVVYAGFGALMLTTCISYLSHSQ 504

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428564|ref|XP_002281077.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic [Vitis vinifera] gi|297741415|emb|CBI32546.3| unnamed protein product [Vitis vinifera]

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/509 (75%), Positives = 438/509 (86%), Gaps = 18/509 (3%)

Query: 1   MGTLKPPTLPTRTHILKAPLLHSTFNPQLH----TLFNRCIT--LSSTISCKLRTSQDVK 54
           M TLKP    ++T  LK+PLL S+F PQ       + + C +  LS +I+CKL+TS+D K
Sbjct: 1   MYTLKPSF--SKTLFLKSPLLRSSFKPQFFPYTTQISSPCSSTPLSFSITCKLKTSEDGK 58

Query: 55  KKKDNVSKKIVFSDSSPPSLKNDEVSGEVESKNG---------VIGLVKRLPRRVLAALS 105
             K +++KKIV S+ +P   ++   +GE + K             GLVKR PR+VL+ LS
Sbjct: 59  SSK-SLAKKIVLSEGAPAVSEDGAGNGEAQPKPASKGGGGGGGFGGLVKRFPRKVLSRLS 117

Query: 106 NLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFS 165
           NLPLAIGEM  +AALMALGTAI+QGE PD+YFQK+PEDNPV GFFTWRW+LTLGFDHMFS
Sbjct: 118 NLPLAIGEMFTVAALMALGTAIDQGEAPDYYFQKFPEDNPVLGFFTWRWVLTLGFDHMFS 177

Query: 166 SPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLG 225
           SPIFLG+L ++  SLMACTYTTQIPLVKVARRW+FLHSAEAIRKQEFS++LP+AS++DLG
Sbjct: 178 SPIFLGMLALLATSLMACTYTTQIPLVKVARRWNFLHSAEAIRKQEFSESLPKASVRDLG 237

Query: 226 VILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQG 285
           V+LMGAGYEVFLKGPSLYAFKGL GRFAPIGVHLAMLLIM GGTLSATGSFRGSVTVPQG
Sbjct: 238 VVLMGAGYEVFLKGPSLYAFKGLAGRFAPIGVHLAMLLIMVGGTLSATGSFRGSVTVPQG 297

Query: 286 LNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMR 345
           LNFV+GDVL P+GFLSTPT AF TEVHVN+FYMDYYDSGEV QFH+DLSLFD+ GKEVMR
Sbjct: 298 LNFVMGDVLSPSGFLSTPTKAFDTEVHVNRFYMDYYDSGEVLQFHTDLSLFDLNGKEVMR 357

Query: 346 KTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGD 405
           KTISVNDPLR+ GITIYQTDWSFSALQ+ K+DEGPFNLAMAPLK+NGDKKLFGTFLP+GD
Sbjct: 358 KTISVNDPLRFDGITIYQTDWSFSALQIRKDDEGPFNLAMAPLKLNGDKKLFGTFLPVGD 417

Query: 406 VNSPNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDL 465
            +SPNVKGISMLARDLQSIV+YD+EGKF GVRRPNS LPIDIDGT+IVI DAIGS+GLDL
Sbjct: 418 SDSPNVKGISMLARDLQSIVLYDKEGKFAGVRRPNSNLPIDIDGTRIVIEDAIGSSGLDL 477

Query: 466 KTDPGVPIVYAGFGALMLTTCISFLSHTQ 494
           KTDPGVPIVYAGFGALMLTTCIS+LSHTQ
Sbjct: 478 KTDPGVPIVYAGFGALMLTTCISYLSHTQ 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538823|ref|XP_003537900.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like [Glycine max]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/500 (74%), Positives = 433/500 (86%), Gaps = 13/500 (2%)

Query: 7   PTLPTRTHILKAPLLHS--TFNPQLHTLF--NRCITLSSTISCKLRTSQDVKKKKDNVSK 62
           P LP +TH LK P+ H    F P  ++     R  TL  TISCKL+ SQ++K K  +VS+
Sbjct: 14  PCLP-QTHFLKVPIFHPFFRFKPFSNSSHGAKRAHTLPLTISCKLKNSQEMKNKGKSVSQ 72

Query: 63  KIVFSDSSPPSLKNDE--------VSGEVESKNGVIGLVKRLPRRVLAALSNLPLAIGEM 114
           KIV S++SPP L  D+        V    + K G+ G+   L R+ L  LSNLPLAIGEM
Sbjct: 73  KIVLSEASPPPLTEDDKNNGDSKDVPESSKKKGGLSGVANMLRRKTLQILSNLPLAIGEM 132

Query: 115 AAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLV 174
            A+A+LMALGT I+QGE PDFYFQKYPED+PVFGFFTWRW+LTLGFDHMF+SPIFLG+L 
Sbjct: 133 FAVASLMALGTFIDQGEAPDFYFQKYPEDHPVFGFFTWRWVLTLGFDHMFTSPIFLGVLA 192

Query: 175 MMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYE 234
           ++G SLMACTYTTQ+PL+KV+RRWSFLHSAEAIRKQEFS++LPRASIQD+G ILMGAGYE
Sbjct: 193 LLGASLMACTYTTQLPLIKVSRRWSFLHSAEAIRKQEFSESLPRASIQDVGTILMGAGYE 252

Query: 235 VFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL 294
           VFLKGPSLYAF+GL GR AP+GVH+A+LLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL
Sbjct: 253 VFLKGPSLYAFQGLAGRLAPVGVHIALLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL 312

Query: 295 GPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPL 354
            P GFLS+PTDAF+TE+HVNKF MDYY+SGEV QFH+DLSL ++ GKEVMRKTISVNDPL
Sbjct: 313 APFGFLSSPTDAFNTEIHVNKFSMDYYESGEVSQFHTDLSLRNMDGKEVMRKTISVNDPL 372

Query: 355 RYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGI 414
           RYGGITIYQTDWS SALQ+LK++EGP+NLAMAPL++NGDKKLFGTFLP+GD+NSP+VKGI
Sbjct: 373 RYGGITIYQTDWSISALQILKDNEGPYNLAMAPLQINGDKKLFGTFLPVGDINSPDVKGI 432

Query: 415 SMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIV 474
           SMLARDLQSIV+YD+EGKF GVRRPNSKLPI+IDG++IVIVDAIGS+GL+LKTDPGVP+V
Sbjct: 433 SMLARDLQSIVLYDKEGKFAGVRRPNSKLPINIDGSEIVIVDAIGSSGLELKTDPGVPVV 492

Query: 475 YAGFGALMLTTCISFLSHTQ 494
           YAGFGALM+TTCIS+LSH+Q
Sbjct: 493 YAGFGALMITTCISYLSHSQ 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506421|ref|XP_004162745.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like [Cucumis sativus]

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/495 (75%), Positives = 429/495 (86%), Gaps = 12/495 (2%)

Query: 7   PTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKDNVSKKIVF 66
           P+L ++  +LK   LHS F+ Q+ TL    I  S +++CK + SQD  KK  N S KIV 
Sbjct: 21  PSL-SKPFLLKTSFLHSVFSHQI-TLRTAQIR-SFSVTCKNKASQD--KKLKNASNKIVL 75

Query: 67  SDSSPP-----SLKNDEVSGEVESKNGV--IGLVKRLPRRVLAALSNLPLAIGEMAAIAA 119
           S+++PP     S K+     EV+  NG   + LVKRLP+R+L ALSNLPLAIGEM  IAA
Sbjct: 76  SEAAPPLAEEESDKSGNAEAEVKPGNGSRSMKLVKRLPKRILGALSNLPLAIGEMFTIAA 135

Query: 120 LMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLS 179
           LMALGT I+QGE PDFYFQKYPEDNP++GFF WRWILTLGFDHM+SS IFLG+L ++G+S
Sbjct: 136 LMALGTVIDQGEAPDFYFQKYPEDNPLWGFFNWRWILTLGFDHMYSSTIFLGMLALLGIS 195

Query: 180 LMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKG 239
           LMACTYTTQIPLVKVARRW+FL S E IRK E SD LPRAS+QDLGV+LMGAGYEVF+KG
Sbjct: 196 LMACTYTTQIPLVKVARRWNFLQSGETIRKLECSDILPRASVQDLGVVLMGAGYEVFIKG 255

Query: 240 PSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGF 299
           P+LYAFKGL GRFAPIGVHLAMLLIMAG TLSATGSFRGSVTVPQGLNFVVGDVL P+GF
Sbjct: 256 PTLYAFKGLAGRFAPIGVHLAMLLIMAGATLSATGSFRGSVTVPQGLNFVVGDVLNPSGF 315

Query: 300 LSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGI 359
           L+ PT+AF+TEVHVNKFYM+YYDSGE+KQF+SDLSLFD+ GKEVMRKTISVN+PLRYGG 
Sbjct: 316 LAKPTEAFNTEVHVNKFYMNYYDSGEIKQFYSDLSLFDLNGKEVMRKTISVNNPLRYGGF 375

Query: 360 TIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLAR 419
           TIYQTDW FSALQ+LKNDEGPFNLA+APLK+NGDKKL+GTFLP+GDVNSP+VKGISMLAR
Sbjct: 376 TIYQTDWGFSALQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVNSPDVKGISMLAR 435

Query: 420 DLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFG 479
           DLQSIV+YDQEGKF GVRRP+S+LPIDI+G KI IVDAIGSTGL+LKTDPGVPIVYAGFG
Sbjct: 436 DLQSIVLYDQEGKFVGVRRPSSRLPIDINGIKIEIVDAIGSTGLELKTDPGVPIVYAGFG 495

Query: 480 ALMLTTCISFLSHTQ 494
           ALMLTTC+S+LSH+Q
Sbjct: 496 ALMLTTCVSYLSHSQ 510

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438715|ref|XP_004137133.1| PREDICTED: cytochrome c biogenesis protein CCS1, chloroplastic-like [Cucumis sativus]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/502 (73%), Positives = 424/502 (84%), Gaps = 19/502 (3%)

Query: 7   PTLPTRTHILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKDNVSKKIVF 66
           P+L ++  +LK   LHS F+ Q+ TL    I  S +++CK + SQD  KK  N S KIV 
Sbjct: 11  PSL-SKPFLLKTSFLHSVFSHQI-TLRTAQIR-SFSVTCKNKASQD--KKLKNASNKIVL 65

Query: 67  SDSSPP-----SLKNDEVSGEVESKNGV--IGLVKRLPRRVLAALSNLPLAIGEMAAIAA 119
           S+++PP     S K+     EV+  NG   + LVKRLP+R+L ALSNLPLAIGEM  IAA
Sbjct: 66  SEAAPPLAEEESDKSGNAEAEVKPGNGSRSMKLVKRLPKRILGALSNLPLAIGEMFTIAA 125

Query: 120 LMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLS 179
           LMALGT I+QGE PDFYFQKYPEDNP++GFF WRWILTLGFDHM+SS IFLG+L ++G+S
Sbjct: 126 LMALGTVIDQGEAPDFYFQKYPEDNPLWGFFNWRWILTLGFDHMYSSTIFLGMLALLGIS 185

Query: 180 LMACTYTTQIPLVKVA-------RRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAG 232
           LMACTYTTQIPLV            W+FL S E IRK E SD LPRAS+QDLGV+LMGAG
Sbjct: 186 LMACTYTTQIPLVFFFFLFLSLKHTWNFLQSGETIRKLECSDILPRASVQDLGVVLMGAG 245

Query: 233 YEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGD 292
           YEVF+KGP+LYAFKGL GRFAPIGVHLAMLLIMAG TLSATGSFRGSVTVPQGLNFVVGD
Sbjct: 246 YEVFIKGPTLYAFKGLAGRFAPIGVHLAMLLIMAGATLSATGSFRGSVTVPQGLNFVVGD 305

Query: 293 VLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVND 352
           VL P+GFL+ PT+AF+TEVHVNKFYM+YYDSGE+KQF+SDLSLFD+ GKEVMRKTISVN+
Sbjct: 306 VLNPSGFLAKPTEAFNTEVHVNKFYMNYYDSGEIKQFYSDLSLFDLNGKEVMRKTISVNN 365

Query: 353 PLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVK 412
           PLRYGG TIYQTDW FSALQ+LKNDEGPFNLA+APLK+NGDKKL+GTFLP+GDVNSP+VK
Sbjct: 366 PLRYGGFTIYQTDWGFSALQILKNDEGPFNLAVAPLKINGDKKLYGTFLPVGDVNSPDVK 425

Query: 413 GISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVP 472
           GISMLARDLQSIV+YDQEGKF GVRRP+S+LPIDI+G KI IVDAIGSTGL+LKTDPGVP
Sbjct: 426 GISMLARDLQSIVLYDQEGKFVGVRRPSSRLPIDINGIKIEIVDAIGSTGLELKTDPGVP 485

Query: 473 IVYAGFGALMLTTCISFLSHTQ 494
           IVYAGFGALMLTTC+S+LSH+Q
Sbjct: 486 IVYAGFGALMLTTCVSYLSHSQ 507

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847228|ref|XP_002891495.1| cytochrome c biogenesis protein family [Arabidopsis lyrata subsp. lyrata] gi|297337337|gb|EFH67754.1| cytochrome c biogenesis protein family [Arabidopsis lyrata subsp. lyrata]

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/498 (72%), Positives = 409/498 (82%), Gaps = 21/498 (4%)

Query: 14  HILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKD---NVSKKIVFSDSS 70
           +IL    LHS      +    R ++L  T +CKL+  Q+  ++     N++K I  SDS+
Sbjct: 8   NILHFSKLHSFSRSSSYFYRTRNVSL--TTNCKLQKPQNGNQRSSSNGNLTKTISLSDSA 65

Query: 71  PPSLKNDEVSGEVESKNGVIG--------------LVKRLPRRVLAALSNLPLAIGEMAA 116
           PP    +E  GEV    G  G               +K LPR+VL+ LSNLPLAI EM  
Sbjct: 66  PPV--TEETVGEVSGDGGGNGGGGGGGGDGRGGLGFLKILPRKVLSVLSNLPLAITEMFT 123

Query: 117 IAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMM 176
           IAALMALGT IEQGE PDFYFQKYPEDNPV GFFTWRWI TLG DHM+S+PIFLG+LV++
Sbjct: 124 IAALMALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAPIFLGMLVLL 183

Query: 177 GLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVF 236
             SLMACTYTTQIPLVKVARRWSF+ S EAI+KQEF+DTLPRASIQDLG+ILMG G+EVF
Sbjct: 184 AASLMACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMILMGDGFEVF 243

Query: 237 LKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGP 296
           +KGPSLYAFKGL GRFAPIGVH+AMLLIM GGTLSATGSFRGSVTVPQGLNFV+GDVL P
Sbjct: 244 MKGPSLYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDVLAP 303

Query: 297 NGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRY 356
            GF S PTDAF+TEVHVN+F MDYYDSGEV QFHSDLSL D+ GKEV+RKTISVNDPLRY
Sbjct: 304 VGFFSIPTDAFNTEVHVNRFTMDYYDSGEVSQFHSDLSLRDLNGKEVLRKTISVNDPLRY 363

Query: 357 GGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISM 416
           GG+T+YQTDWSFSALQV K+ EGPFNLAMAP+K+NGDKKL+GTFLP+GD N+PNVKGISM
Sbjct: 364 GGVTVYQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTNAPNVKGISM 423

Query: 417 LARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYA 476
           LARDLQSIV+YD EGKF G+RRPNSKLPI+I+G KIVI DAIGSTGL+LKTDPGVP+VYA
Sbjct: 424 LARDLQSIVVYDLEGKFAGIRRPNSKLPIEINGMKIVIEDAIGSTGLELKTDPGVPVVYA 483

Query: 477 GFGALMLTTCISFLSHTQ 494
           GFGALMLTTCIS+LSH+Q
Sbjct: 484 GFGALMLTTCISYLSHSQ 501

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402618|ref|NP_564544.1| cytochrome c biogenesis protein CCS1 [Arabidopsis thaliana] gi|75215676|sp|Q9XIA4.1|CCS1_ARATH RecName: Full=Cytochrome c biogenesis protein CCS1, chloroplastic; AltName: Full=C-type cytochrome synthesis protein 1; Flags: Precursor gi|5430762|gb|AAD43162.1|AC007504_17 Similar to CCS1 [Arabidopsis thaliana] gi|26449682|dbj|BAC41965.1| unknown protein [Arabidopsis thaliana] gi|332194302|gb|AEE32423.1| cytochrome c biogenesis protein CCS1 [Arabidopsis thaliana]

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/495 (71%), Positives = 408/495 (82%), Gaps = 20/495 (4%)

Query: 15  ILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQDVKKKKD---NVSKKIVFSDSSP 71
           IL    +H    P  +    R ++L +  +CKL+  QD  ++     N++K I  SDS+P
Sbjct: 9   ILHFSKIHPFSRPSSYLCRTRNVSLIT--NCKLQKPQDGNQRSSSNRNLTKTISLSDSAP 66

Query: 72  PSLKNDEVSGEVESKNGVIG------------LVKRLPRRVLAALSNLPLAIGEMAAIAA 119
           P     E +G+   K G  G             +K LPR+VL+ LSNLPLAI EM  IAA
Sbjct: 67  PV---TEETGDGIVKGGGNGGGGGGDGRGGLGFLKILPRKVLSVLSNLPLAITEMFTIAA 123

Query: 120 LMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLS 179
           LMALGT IEQGE PDFYFQKYPEDNPV GFFTWRWI TLG DHM+S+PIFLG+LV++  S
Sbjct: 124 LMALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAPIFLGMLVLLAAS 183

Query: 180 LMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKG 239
           LMACTYTTQIPLVKVARRWSF+ S EAI+KQEF+DTLPRASIQDLG+ILMG G+EVF+KG
Sbjct: 184 LMACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMILMGDGFEVFMKG 243

Query: 240 PSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGF 299
           PSLYAFKGL GRFAPIGVH+AMLLIM GGTLSATGSFRGSVTVPQGLNFV+GDVL P GF
Sbjct: 244 PSLYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDVLAPIGF 303

Query: 300 LSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGI 359
            S PTDAF+TEVHVN+F MDYYDSGEV QFHSDLSL D+ GKEV+RKTISVNDPLRYGG+
Sbjct: 304 FSIPTDAFNTEVHVNRFTMDYYDSGEVSQFHSDLSLRDLNGKEVLRKTISVNDPLRYGGV 363

Query: 360 TIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLAR 419
           T+YQTDWSFSALQV K+ EGPFNLAMAP+K+NGDKKL+GTFLP+GD N+PNVKGISMLAR
Sbjct: 364 TVYQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTNAPNVKGISMLAR 423

Query: 420 DLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFG 479
           DLQSIV+YD +GKF G+RRP+SKLPI+I+G KIVI DAIGSTGL+LKTDPGVP+VYAGFG
Sbjct: 424 DLQSIVVYDLDGKFAGIRRPSSKLPIEINGMKIVIEDAIGSTGLELKTDPGVPVVYAGFG 483

Query: 480 ALMLTTCISFLSHTQ 494
           ALMLTTCIS+LSH+Q
Sbjct: 484 ALMLTTCISYLSHSQ 498

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242032857|ref|XP_002463823.1| hypothetical protein SORBIDRAFT_01g006880 [Sorghum bicolor] gi|241917677|gb|EER90821.1| hypothetical protein SORBIDRAFT_01g006880 [Sorghum bicolor]

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/446 (76%), Positives = 382/446 (85%), Gaps = 13/446 (2%)

Query: 62  KKIVFSDSSPPSLKN-----DEVSGEVESK------NGVIGLVKRLPRRVLAALSNLPLA 110
           K+IVF D++PP  +      ++  GE  +       N  + L++R  +R LA LSNLPLA
Sbjct: 64  KQIVFFDAAPPVSQEGGAAVEKAGGEKPTTKVGSGGNAALALLRRATKRTLAVLSNLPLA 123

Query: 111 IGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFL 170
           I EM AIAALMALGT I+QGE P +YF+K+PEDNPVFGF TWRWILT GFDHMFSSP+FL
Sbjct: 124 ISEMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDHMFSSPVFL 183

Query: 171 GLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMG 230
           GLL ++  SLMACTYTTQ+P+VKVARRWSF HS E IRKQEF+D+LPRAS+QDLGVILMG
Sbjct: 184 GLLALLATSLMACTYTTQLPMVKVARRWSFTHSGERIRKQEFADSLPRASVQDLGVILMG 243

Query: 231 AGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVV 290
           AGYEVF KGPSLYAFKGL GR+APIGVHLAML IMAG TLSATGSF+GSV VPQGLNFV+
Sbjct: 244 AGYEVFTKGPSLYAFKGLAGRYAPIGVHLAMLFIMAGATLSATGSFKGSVDVPQGLNFVI 303

Query: 291 GDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISV 350
           GDV+ P G LS   D F+TEVHVN+FYM+YYDSGEV QF+SDLSLF++ GKEVMRKTI V
Sbjct: 304 GDVMKPRGVLSVAPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFNLDGKEVMRKTIKV 363

Query: 351 NDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNS-- 408
           NDPLRYGGITIYQTDW FSALQV KN EGPFNLAMAPLK+NGDKKLFGTFLPL DV+S  
Sbjct: 364 NDPLRYGGITIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTFLPLEDVDSSN 423

Query: 409 PNVKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTD 468
           PNVKGISMLARDLQSIV+YDQEGKF GVRRP+SKLPI+I+G +I+I DAIGSTGLDLKTD
Sbjct: 424 PNVKGISMLARDLQSIVLYDQEGKFVGVRRPSSKLPIEINGNEILIEDAIGSTGLDLKTD 483

Query: 469 PGVPIVYAGFGALMLTTCISFLSHTQ 494
           PGVPIVYAGFGALMLTTCIS+LSH+Q
Sbjct: 484 PGVPIVYAGFGALMLTTCISYLSHSQ 509

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226528547|ref|NP_001143217.1| uncharacterized protein LOC100275725 [Zea mays] gi|195616036|gb|ACG29848.1| hypothetical protein [Zea mays]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/444 (75%), Positives = 380/444 (85%), Gaps = 11/444 (2%)

Query: 62  KKIVFSDSSPPSLKN---------DEVSGEVESKNGVIGLVKRLPRRVLAALSNLPLAIG 112
           K+IVF D++PP  +           E   +V S N  + L++R  +R L+ LSNLPLAI 
Sbjct: 54  KQIVFFDAAPPVSQEGGGAVKKAGSEKLTQVGSGNAALALLRRATKRTLSVLSNLPLAIS 113

Query: 113 EMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGL 172
           EM AIAALMALGT I+QGE P +YF+K+PEDNPVFGF TWRWILT GFDHMFSSP+FLGL
Sbjct: 114 EMFAIAALMALGTVIDQGEAPSYYFEKFPEDNPVFGFITWRWILTPGFDHMFSSPVFLGL 173

Query: 173 LVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAG 232
           L ++  SLMACTYTTQ+P+VKVARRWSF HS E IRKQEF+D+LP+ASIQDLGVILMGAG
Sbjct: 174 LALLATSLMACTYTTQLPMVKVARRWSFTHSGERIRKQEFADSLPQASIQDLGVILMGAG 233

Query: 233 YEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGD 292
           YEVF KGPSLYAFKGL GR+APIGVHLAML IMAG TLSATGSF+GSV VPQGLNFV+GD
Sbjct: 234 YEVFTKGPSLYAFKGLAGRYAPIGVHLAMLFIMAGATLSATGSFKGSVDVPQGLNFVIGD 293

Query: 293 VLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVND 352
           V+ P G LS   D F+TEVHVN+FYM+YYDSGEV QF+SDLSLF++ GKEVMRKTI VND
Sbjct: 294 VMKPRGVLSVAPDVFNTEVHVNRFYMEYYDSGEVSQFYSDLSLFNLDGKEVMRKTIKVND 353

Query: 353 PLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNS--PN 410
           PLRYGG+TIYQTDW FSALQV KN EGPFNLAMAPLK+NGDKKLFGTFLPL D +S  PN
Sbjct: 354 PLRYGGVTIYQTDWGFSALQVKKNGEGPFNLAMAPLKLNGDKKLFGTFLPLEDSDSSNPN 413

Query: 411 VKGISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPG 470
           VKGISMLARDLQSIV+YDQ+GKF GVRRP+SKLPI+I+G +I+I DAIGSTGLDLKTDPG
Sbjct: 414 VKGISMLARDLQSIVLYDQDGKFVGVRRPSSKLPIEINGNEILIEDAIGSTGLDLKTDPG 473

Query: 471 VPIVYAGFGALMLTTCISFLSHTQ 494
           VPIVYAGFGALMLTTCIS+LSH+Q
Sbjct: 474 VPIVYAGFGALMLTTCISYLSHSQ 497

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103463|ref|XP_002313066.1| predicted protein [Populus trichocarpa] gi|222849474|gb|EEE87021.1| predicted protein [Populus trichocarpa]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/381 (84%), Positives = 363/381 (95%)

Query: 114 MAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLL 173
           M +IA LMALGT I+QGE P+FYFQK+PE+NP+ GFFTW+W+LTLGFDHM+SSP+FLG+L
Sbjct: 1   MFSIAVLMALGTLIDQGEAPEFYFQKFPEENPLLGFFTWKWVLTLGFDHMYSSPVFLGML 60

Query: 174 VMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGY 233
            ++G+SLMACTYTTQIPL KVARRW++LHSA+AIRKQEFSD LPRAS+QDLGVILMG+GY
Sbjct: 61  ALLGVSLMACTYTTQIPLAKVARRWNYLHSADAIRKQEFSDNLPRASVQDLGVILMGSGY 120

Query: 234 EVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDV 293
           EVFLKGPSLYAFKGL GRF+PIGVHLAMLLIMAG TLSATGSFRGSVTVPQGLNFVVGDV
Sbjct: 121 EVFLKGPSLYAFKGLAGRFSPIGVHLAMLLIMAGATLSATGSFRGSVTVPQGLNFVVGDV 180

Query: 294 LGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDP 353
           LGP+GFLSTPT+AF+TEVHVN+FYMDYYD G+VKQFH+DLSLFD+ GKEVMRKTISVNDP
Sbjct: 181 LGPSGFLSTPTEAFNTEVHVNRFYMDYYDGGDVKQFHTDLSLFDLNGKEVMRKTISVNDP 240

Query: 354 LRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKG 413
           LRYGGIT+YQTDWS SALQV K+DEGPFNLAMAPLK++GD KL+GTFLP+GDVNSPNVKG
Sbjct: 241 LRYGGITMYQTDWSISALQVRKDDEGPFNLAMAPLKISGDNKLYGTFLPVGDVNSPNVKG 300

Query: 414 ISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPI 473
           ISMLARDLQSIV+YDQEGKF GVRRPNSKLPIDIDG KI+I DAIGS+GL+LKTDPGVP+
Sbjct: 301 ISMLARDLQSIVLYDQEGKFVGVRRPNSKLPIDIDGMKIIIEDAIGSSGLELKTDPGVPV 360

Query: 474 VYAGFGALMLTTCISFLSHTQ 494
           VYAGFGALMLTTC+S+LSH+Q
Sbjct: 361 VYAGFGALMLTTCLSYLSHSQ 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
TAIR|locus:2010267	547	AT1G49380 "AT1G49380" [Arabido	0.961	0.872	0.669	8.9e-173
UNIPROTKB|Q74FJ5	454	GSU0613 "ResB-like family cyto	0.473	0.517	0.268	8.2e-11
TIGR_CMR|GSU_0613	454	GSU_0613 "ResB-like family pro	0.473	0.517	0.268	8.2e-11

TAIR|locus:2010267 AT1G49380 "AT1G49380" [Arabidopsis thaliana (taxid:3702)]

 Score = 1679 (596.1 bits), Expect = 8.9e-173, P = 8.9e-173
 Identities = 330/493 (66%), Positives = 378/493 (76%)

Query:    15 ILKAPLLHSTFNPQLHTLFNRCITLSSTISCKLRTSQXXXXXXXXX---XXXIVFSDSSP 71
             IL    +H    P  +    R ++L +  +CKL+  Q               I  SDS+P
Sbjct:     9 ILHFSKIHPFSRPSSYLCRTRNVSLIT--NCKLQKPQDGNQRSSSNRNLTKTISLSDSAP 66

Query:    72 PSLKN--DEV--------SGEVESKNGVIGLVKRLPRRVLAALSNLPXXXXXXXXXXXXX 121
             P  +   D +         G  + + G +G +K LPR+VL+ LSNLP             
Sbjct:    67 PVTEETGDGIVKGGGNGGGGGGDGRGG-LGFLKILPRKVLSVLSNLPLAITEMFTIAALM 125

Query:   122 XXXXXXEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFXXXXXXXXXXXX 181
                   EQGE PDFYFQKYPEDNPV GFFTWRWI TLG DHM+S+PIF            
Sbjct:   126 ALGTVIEQGETPDFYFQKYPEDNPVLGFFTWRWISTLGLDHMYSAPIFLGMLVLLAASLM 185

Query:   182 ACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPS 241
             ACTYTTQIPLVKVARRWSF+ S EAI+KQEF+DTLPRASIQDLG+ILMG G+EVF+KGPS
Sbjct:   186 ACTYTTQIPLVKVARRWSFMKSDEAIKKQEFADTLPRASIQDLGMILMGDGFEVFMKGPS 245

Query:   242 LYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLS 301
             LYAFKGL GRFAPIGVH+AMLLIM GGTLSATGSFRGSVTVPQGLNFV+GDVL P GF S
Sbjct:   246 LYAFKGLAGRFAPIGVHIAMLLIMVGGTLSATGSFRGSVTVPQGLNFVMGDVLAPIGFFS 305

Query:   302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITI 361
              PTDAF+TEVHVN+F MDYYDSGEV QFHSDLSL D+ GKEV+RKTISVNDPLRYGG+T+
Sbjct:   306 IPTDAFNTEVHVNRFTMDYYDSGEVSQFHSDLSLRDLNGKEVLRKTISVNDPLRYGGVTV 365

Query:   362 YQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKGISMLARDL 421
             YQTDWSFSALQV K+ EGPFNLAMAP+K+NGDKKL+GTFLP+GD N+PNVKGISMLARDL
Sbjct:   366 YQTDWSFSALQVTKDGEGPFNLAMAPIKINGDKKLYGTFLPVGDTNAPNVKGISMLARDL 425

Query:   422 QSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGAL 481
             QSIV+YD +GKF G+RRP+SKLPI+I+G KIVI DAIGSTGL+LKTDPGVP+VYAGFGAL
Sbjct:   426 QSIVVYDLDGKFAGIRRPSSKLPIEINGMKIVIEDAIGSTGLELKTDPGVPVVYAGFGAL 485

Query:   482 MLTTCISFLSHTQ 494
             MLTTCIS+LSH+Q
Sbjct:   486 MLTTCISYLSHSQ 498

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0017004 "cytochrome complex assembly" evidence=ISS

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q74FJ5 GSU0613 "ResB-like family cytochrome c biogenesis protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 180 (68.4 bits), Expect = 8.2e-11, P = 8.2e-11
 Identities = 73/272 (26%), Positives = 124/272 (45%)

Query:   242 LYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLS 301
             L+A K    R     VHL++++I  G  L +   ++  V + +G       V+   G   
Sbjct:   160 LFAQKSPYSRLGVYVVHLSIVIIFIGALLGSFFGYKAYVNIVEGSG--ASTVMSRKG--- 214

Query:   302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVM-RKTISVNDPLRYGGIT 360
              P D   T V    F + +YD+G  K+F S L++ D GGK V+ ++ + VN+PL Y GIT
Sbjct:   215 VPIDLGFT-VKCEDFSVSFYDTGAPKEFKSLLTVID-GGKVVIDKRPVIVNEPLTYKGIT 272

Query:   361 IYQTDWS------FSALQVLKNDEG-P--FNLAMAPLKVNGDKKL---------FGTFLP 402
              YQ+ +          L V +   G P   +L+M   KV  D             G F+P
Sbjct:   273 FYQSSYGPADEGGLYHLTVRERKGGAPVRLSLSMGERKVLPDGSAVQLLEATDEIGRFIP 332

Query:   403 LGDVNSPNVK-GISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGST 461
                   P V+  +   + + Q+ +++    +F  V+R    +    +G  + +      T
Sbjct:   333 --QFRGPAVRVAVEPKSGEPQAFIVFQNYPEFD-VQRGADHI-FTYEGADLKMF-----T 383

Query:   462 GLDLKTDPGVPIVYAGFGALMLTTCISF-LSH 492
             GL +  DPGV +V+ G   +++  C++F +SH
Sbjct:   384 GLQVAKDPGVWVVWLGCTLMVVGCCMAFFMSH 415

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0613 GSU_0613 "ResB-like family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 180 (68.4 bits), Expect = 8.2e-11, P = 8.2e-11
 Identities = 73/272 (26%), Positives = 124/272 (45%)

Query:   242 LYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLS 301
             L+A K    R     VHL++++I  G  L +   ++  V + +G       V+   G   
Sbjct:   160 LFAQKSPYSRLGVYVVHLSIVIIFIGALLGSFFGYKAYVNIVEGSG--ASTVMSRKG--- 214

Query:   302 TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVM-RKTISVNDPLRYGGIT 360
              P D   T V    F + +YD+G  K+F S L++ D GGK V+ ++ + VN+PL Y GIT
Sbjct:   215 VPIDLGFT-VKCEDFSVSFYDTGAPKEFKSLLTVID-GGKVVIDKRPVIVNEPLTYKGIT 272

Query:   361 IYQTDWS------FSALQVLKNDEG-P--FNLAMAPLKVNGDKKL---------FGTFLP 402
              YQ+ +          L V +   G P   +L+M   KV  D             G F+P
Sbjct:   273 FYQSSYGPADEGGLYHLTVRERKGGAPVRLSLSMGERKVLPDGSAVQLLEATDEIGRFIP 332

Query:   403 LGDVNSPNVK-GISMLARDLQSIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGST 461
                   P V+  +   + + Q+ +++    +F  V+R    +    +G  + +      T
Sbjct:   333 --QFRGPAVRVAVEPKSGEPQAFIVFQNYPEFD-VQRGADHI-FTYEGADLKMF-----T 383

Query:   462 GLDLKTDPGVPIVYAGFGALMLTTCISF-LSH 492
             GL +  DPGV +V+ G   +++  C++F +SH
Sbjct:   384 GLQVAKDPGVWVVWLGCTLMVVGCCMAFFMSH 415


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.139   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      496       453   0.00093  118 3  11 22  0.38    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  259 KB (2138 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.38u 0.12s 33.50t   Elapsed:  00:00:02
  Total cpu time:  33.38u 0.12s 33.50t   Elapsed:  00:00:02
  Start:  Tue May 21 09:01:39 2013   End:  Tue May 21 09:01:41 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q75KA9	CCS1_ORYSJ	No assigned EC number	0.7511	0.8729	0.7677	yes	no
Q9XIA4	CCS1_ARATH	No assigned EC number	0.7191	0.9576	0.8683	yes	no
Q7NJ11	CCS1_GLOVI	No assigned EC number	0.3756	0.8004	0.8375	yes	no
Q118K5	CCS1_TRIEI	No assigned EC number	0.4072	0.8185	0.8601	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036435001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (557 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	ccsA	cytochrome c biogenesis protein ; Required during biogenesis of c-type cytochromes (cytochrome [...] (314 aa)	•		•				•		0.789
	GSVIVG00006957001	SubName- Full=Chromosome chr1 scaffold_180, whole genome shotgun sequence; (194 aa)	•		•				•		0.669
	GSVIVG00028931001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (291 aa)	•		•	•					0.572
	GSVIVG00023910001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa)			•	•					0.539
	GSVIVG00037523001	SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (352 aa)	•			•					0.515
	GSVIVG00022834001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (353 aa)			•	•					0.497
	PsbP2	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)			•	•					0.482
	GSVIVG00029334001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (846 aa)				•			•		0.474
	GSVIVG00018549001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (235 aa)			•	•					0.467
	GSVIVG00029202001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (297 aa)			•	•					0.463

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	496
pfam05140	437	pfam05140, ResB, ResB-like family	1e-118
CHL00177	426	CHL00177, ccs1, c-type cytochrome biogenensis prot	1e-106
COG1333	478	COG1333, ResB, ResB protein required for cytochrom	7e-53

>gnl|CDD|218462 pfam05140, ResB, ResB-like family

 Score =  353 bits (908), Expect = e-118
 Identities = 143/419 (34%), Positives = 204/419 (48%), Gaps = 42/419 (10%)

Query: 107 LPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSS 166
           L LAI  +  +A    +GT I Q E   FY + Y       G F    I  LG   ++SS
Sbjct: 1   LRLAISLLLLLAIASIIGTVIPQREPVAFYIENY-------GPFLGPIIDRLGLFDVYSS 53

Query: 167 PIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPR----ASIQ 222
             FL LL ++ +SL+ C+   Q PL+K  RRW       ++ +   S  L       +++
Sbjct: 54  WWFLALLALLFVSLIGCSLRRQPPLLKALRRWPVRTPERSLSRLPLSAELTTPAPEEALE 113

Query: 223 DLGVILMGAGYEVFLKGP-SLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVT 281
            L  +L   GY VF +G  SLYA KG +GR  P+ VHL ++LI+ G  L +   FRG V 
Sbjct: 114 QLAALLKKRGYRVFEEGGRSLYAEKGRLGRLGPLVVHLGLILILIGAALGSLFGFRGQVI 173

Query: 282 VPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGK 341
           VP+G  F +       G L  P   FS  + +N F ++YY +G+ KQF SDL+L D GGK
Sbjct: 174 VPEGETFDIAYDSFRAGALVQPLP-FS--IRLNDFTIEYYPTGQPKQFASDLTLLDPGGK 230

Query: 342 EVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFN-----------LAMAPLKV 390
           EV RKTI VN PLRYGG+TIYQ  W ++  + + +  G              L    L +
Sbjct: 231 EVKRKTIRVNHPLRYGGVTIYQASWGYAPGETVTDTSGLVVFDTETVPFLPQLPGNLLSL 290

Query: 391 NGDK-----KLFGTFLPLGDVNS---------PNVKGISMLARDLQSIVIYDQEGKFTGV 436
            G+K     + +G FLP  + +          PN   +++   D     + D EG+    
Sbjct: 291 GGEKVGYQLEFWGFFLPTAEFDGGAPTSKFPDPNNPAVTLKVYDGDGG-LDDGEGQSVYS 349

Query: 437 RRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISF-LSHTQ 494
                   I+++G  +     +  TGL +K DPGVPIVY GF  LML   +S  + H +
Sbjct: 350 LDLGELEQIEVNGYSLTFDGVVRFTGLQVKRDPGVPIVYLGFALLMLGLLLSLYIRHRR 408

This family includes both ResB and cytochrome c biogenesis proteins. Mutations in ResB indicate that they are essential for growth. ResB is predicted to be a transmembrane protein. Length = 437

>gnl|CDD|214387 CHL00177, ccs1, c-type cytochrome biogenensis protein; Validated

 Score =  323 bits (831), Expect = e-106
 Identities = 157/405 (38%), Positives = 243/405 (60%), Gaps = 17/405 (4%)

Query: 94  KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWR 153
           K + +++L  L+NL  AI  +  IA    +GT IEQ +  +FY   YP  NP+FGF +W+
Sbjct: 1   KNMKQKLLKLLANLKFAIILLLLIAIFSVIGTIIEQDQSIEFYKNNYPLSNPIFGFLSWK 60

Query: 154 WILTLGFDHMFSSPIFLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFS 213
            IL LG DH++ +  FL LL++ GLSL+ CT   Q+P +K+ARRW F  +    +K + S
Sbjct: 61  IILKLGLDHIYKTWWFLSLLLLFGLSLLLCTLLQQLPSLKIARRWQFYTNKNQFKKLQIS 120

Query: 214 DTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSAT 273
             L + S+  L   L    Y +F +G  +YA+KGL+GR API VH +M+LI+ G  L A 
Sbjct: 121 TNLKKFSLSKLAYKLKSKNYSIFQQGNKIYAYKGLIGRIAPIIVHFSMILILIGSILGAL 180

Query: 274 GSFRGSVTVPQGLNFVVGDVLGPNGFLS-TPTDAFSTEVHVNKFYMDYYDSGEVKQFHSD 332
             F     +P+   F + +++  +G LS  P         VN F++ Y     +KQF+SD
Sbjct: 181 SGFTAQEIIPKTEIFHIQNIIS-SGQLSKIP----QESARVNDFWITYTPEKSIKQFYSD 235

Query: 333 LSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNG 392
           LS+ +  GKE+ RKTISVN PL+Y G+TIYQTDW+   L++   +     + +  ++ N 
Sbjct: 236 LSILNSEGKEIKRKTISVNHPLKYKGLTIYQTDWNIIGLRIKIGNSKIIQIPLIKIENNN 295

Query: 393 DKKLFGTFLPLGDVNSPNVKGISMLARDLQS-IVIYDQEGKFTGVRRPNSKL--PIDIDG 449
           + K++ T++PL   N  N  G++++ +DLQ  I +YD  G F G      +L  PI+++ 
Sbjct: 296 N-KIWLTWIPL---NKQNQSGLTLVIKDLQGKISLYDNNGNFLG----ILELNEPINLNN 347

Query: 450 TKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSHTQ 494
           T I +++ I STGL +K+DPG+PI+Y GF  LM++  IS++S++Q
Sbjct: 348 TPITLIEIISSTGLQIKSDPGIPIIYVGFFLLMISILISYISYSQ 392

Length = 426

>gnl|CDD|224252 COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]

 Score =  185 bits (471), Expect = 7e-53
 Identities = 117/426 (27%), Positives = 179/426 (42%), Gaps = 52/426 (12%)

Query: 109 LAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPI 168
           LAI  +  +A     GT + Q        Q YP+    FG    +WI  LG   ++SS  
Sbjct: 3   LAIALLLLLAIASIPGTVLPQRG----LNQPYPDYYAEFGGLWGQWIDQLGLFDVYSSWW 58

Query: 169 FLGLLVMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTL-----PRASIQD 223
           FL ++V++G+SL+ C+      L + A R   + +   + +   S  L     P A    
Sbjct: 59  FLAIIVLLGVSLVGCSLPRFPALYR-ALRAKPVRAPRNLARLRHSAELDVKIDPEAVKAK 117

Query: 224 LGVILMGAGYEVFLKGP-SLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSA--TGSFRGSV 280
           +  +L G GY++  +G  S+ A KG   R+ PI  H+A+L+I+ G  L     G      
Sbjct: 118 IEKLLRGKGYKIREEGSVSIAAEKGRFSRWGPIIFHIALLIILVGALLDFFYEG-MVVGE 176

Query: 281 TVPQGLNFVVGDVLGPNGFLSTPTDAFSTE------VHVNKFYMDYYDSGEVKQFHSDLS 334
            VP G           + F + PT            V VN+F +DY  +G+   F SD+S
Sbjct: 177 IVPDGETNCSALPAANDKFRAGPT--ADGTILLPFCVRVNRFGIDYLPTGQAYSFASDIS 234

Query: 335 LFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDK 394
           + D  G+EV   TI VN PLRYGG+ +YQ D+  +    +    G         + +  +
Sbjct: 235 VTDGQGEEVAEYTIRVNHPLRYGGVRVYQADYGIAPTFTVTFPLGATRTPTVLWRTDIPQ 294

Query: 395 KLF---------------GTFLPLGDVNSPNVKGISMLARDLQS-IVIYDQ--------- 429
            L                G  +P   +N  N  G+S   ++L +  VI D          
Sbjct: 295 TLLSSVFDPPNGMKVAIQGLLIPTKQLNGRN--GLSSRFKNLNAPAVIIDIYRGRLTASG 352

Query: 430 ---EGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTC 486
              E +   ++     L  D   TK+  ++A+G TGL +  DPG P VY G   LM+   
Sbjct: 353 PLGEIERVALQAGQEVLVNDGPETKVGFLEAVGFTGLQVSKDPGQPWVYVGGAILMVGLV 412

Query: 487 ISFLSH 492
            S    
Sbjct: 413 QSLYWR 418

Length = 478

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
CHL00177	426	ccs1 c-type cytochrome biogenensis protein; Valida	100.0
PF05140	464	ResB: ResB-like family ; InterPro: IPR007816 This	100.0
COG1333	478	ResB ResB protein required for cytochrome c biosyn	100.0
PRK10369	571	heme lyase subunit NrfE; Provisional	98.13
TIGR00353	576	nrfE c-type cytochrome biogenesis protein CcmF. Th	97.99
TIGR03145	628	cyt_nit_nrfE cytochrome c nitrate reductase biogen	97.54
COG1138	648	CcmF Cytochrome c biogenesis factor [Posttranslati	92.6

>CHL00177 ccs1 c-type cytochrome biogenensis protein; Validated

Probab=100.00  E-value=4.7e-92  Score=740.73  Aligned_cols=392  Identities=39%  Similarity=0.746  Sum_probs=363.2

Q ss_pred             cchHHHHHHHhcChhHHHHHHHHHHHHhheeEEeccCCCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHH
Q 010998           94 KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLL  173 (496)
Q Consensus        94 ~~~~r~i~~~LsSmklaI~LL~lLav~siiGTlipQ~~~~~~y~~~y~~~~p~lG~~~~~~i~~Lgl~~vYsSwWF~~Ll  173 (496)
                      ++|++++|++|+|||+||+||++||++|++||+|||+++.++|.++||++.|.+|+.+|+++++|||+|||+||||.+|+
T Consensus         1 ~~~~~~~~~~l~Slr~ai~LL~~ia~~s~~GT~i~Q~~~~~~Y~~~yp~~~p~~G~~~~~~~~~LgL~~vY~s~WF~~ll   80 (426)
T CHL00177          1 KNMKQKLLKLLANLKFAIILLLLIAIFSVIGTIIEQDQSIEFYKNNYPLSNPIFGFLSWKIILKLGLDHIYKTWWFLSLL   80 (426)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEccCCCCHHHHHHhccccccccchhHHHHHHhcCCCccccCHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhcCchhHHHHhhccccccChHhhhccCCccccchhhHHHHHHHHhhCCeEEEeecceEEEEcCcccchh
Q 010998          174 VMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFA  253 (496)
Q Consensus       174 ~LL~inL~~Cti~R~~~~~k~~r~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~L~~~gyrv~~~~~~l~A~Kg~~~r~G  253 (496)
                      +||++||++||++|++|+||.+|+|+++++|++++|++.+.+++.+..+++++.|+++||+++++++.+||+||+++|+|
T Consensus        81 ~ll~isL~~Cs~~R~~p~lk~~r~~~~~~~~~~l~kl~~~~~~~~~~~~~~~~~L~~~gy~v~~~~~~l~A~KG~~gr~G  160 (426)
T CHL00177         81 LLFGLSLLLCTLLQQLPSLKIARRWQFYTNKNQFKKLQISTNLKKFSLSKLAYKLKSKNYSIFQQGNKIYAYKGLIGRIA  160 (426)
T ss_pred             HHHHHHHhheeecccHHHHHHHhcCcccCChhHhhcCccccccchhHHHHHHHHHHHCCeEEEEeCcEEEEecCcchhhh
Confidence            99999999999999999999999999999999999999999998888999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhcccccceEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCeeeEEEEE
Q 010998          254 PIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL  333 (496)
Q Consensus       254 ~~l~HlslvlILiG~llg~~~Gf~g~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~p~~f~Sdl  333 (496)
                      ++++|+|||+||+|+++|+++||+|+++++|||++++.++..+|. .+.+++   ++|+||||+++||++|+|+||+|||
T Consensus       161 ~~lvHlslIvIL~Gal~g~l~G~~g~~~i~eGe~~~i~~~~~~g~-~~~l~~---~svrl~~F~i~y~~~g~p~qF~Sdl  236 (426)
T CHL00177        161 PIIVHFSMILILIGSILGALSGFTAQEIIPKTEIFHIQNIISSGQ-LSKIPQ---ESARVNDFWITYTPEKSIKQFYSDL  236 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceEEEEEEcCCCceecccccCCCC-ccccCC---cEEEEeeEEEEEcCCCCcceEEEEE
Confidence            999999999999999999999999999999999998777655565 344444   3999999999999999999999999


Q ss_pred             EEEecCCceeEEEEEEeCcceEECCeEEEEccCCCceeEEEeCCCcceEeecCccccCCCccEEEEeecCCCCCCCCCcc
Q 010998          334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKG  413 (496)
Q Consensus       334 ti~~~~G~~v~~~~I~VN~PL~y~G~~~YQss~g~~~v~v~~~~~~~~~l~~~~~~~~g~~~~~~~~~P~~~~~~~~~~~  413 (496)
                      ++.|++|+++.+++|+|||||+|+|++|||+|||.++++++.+++..+++|+..++.+ ++++|++++|...+.   ..+
T Consensus       237 si~d~~g~e~~~~tI~VN~PL~y~G~~iYQss~~~~~~~v~~~~~~~~~~pl~~~~~~-~~~~~~~~lP~~~~~---~~~  312 (426)
T CHL00177        237 SILNSEGKEIKRKTISVNHPLKYKGLTIYQTDWNIIGLRIKIGNSKIIQIPLIKIENN-NNKIWLTWIPLNKQN---QSG  312 (426)
T ss_pred             EEEcCCCCeeeeEEEEecCCEEECCEEEEEeccccccEEEEeCCCceEEEEeccccCC-CCeeEeeecCCCCCC---Ccc
Confidence            9998889899999999999999999999999999999999988877899999877554 477999999964322   245


Q ss_pred             eeEEecCCc-eEEEEcCCCceeeeecCCCCCceeeCCeEEEEeeeeeeEEEEEeecCCchHHHHHHHHHHHHHhhhhccc
Q 010998          414 ISMLARDLQ-SIVIYDQEGKFTGVRRPNSKLPIDIDGTKIVIVDAIGSTGLDLKTDPGVPIVYAGFGALMLTTCISFLSH  492 (496)
Q Consensus       414 ~~~~~~d~~-~v~~~~~~g~~~~~~~l~~g~~i~l~g~~i~f~~~~~~tGLqVk~DPGvpiV~~Gf~Ll~lGL~lsf~sh  492 (496)
                      +.++.+|.+ ++.+||++|++++...+  |++.++++++++|++.+++|||||++|||+|+||+||++||+|+++||++|
T Consensus       313 ~~l~~~d~~~~~~~y~~~g~~~~~~~~--g~~~~~~~~~~~~~~~~~~TGLqi~~dPG~~~vy~G~~ll~lG~~~sy~~~  390 (426)
T CHL00177        313 LTLVIKDLQGKISLYDNNGNFLGILEL--NEPINLNNTPITLIEIISSTGLQIKSDPGIPIIYVGFFLLMISILISYISY  390 (426)
T ss_pred             EEEEEecCCcEEEEEcCCCcEeeEEec--CCcceecceEEEEEEEeecceEEEEcCCCCeehHHHHHHHHHHHheeeecc
Confidence            666788887 68899999999887666  788999999999999999999999999999999999999999999999999


Q ss_pred             eec
Q 010998          493 TQT  495 (496)
Q Consensus       493 rqi  495 (496)
                      ||+
T Consensus       391 ~~i  393 (426)
T CHL00177        391 SQI  393 (426)
T ss_pred             eEE
Confidence            997

>PF05140 ResB: ResB-like family ; InterPro: IPR007816 This domain is found in a number of known and suspected cytochrome c biogenesis proteins, including ResB []

Probab=100.00  E-value=2.3e-74  Score=617.68  Aligned_cols=372  Identities=33%  Similarity=0.514  Sum_probs=300.4

Q ss_pred             hhHHHHHHHHHHHHhheeEEeccCCCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHHHHHHHHhhhhhhc
Q 010998          107 LPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYT  186 (496)
Q Consensus       107 mklaI~LL~lLav~siiGTlipQ~~~~~~y~~~y~~~~p~lG~~~~~~i~~Lgl~~vYsSwWF~~Ll~LL~inL~~Cti~  186 (496)
                      ||+||+||++||++|++||+|||+++.++|.++|       |+.+++|+++|||+||||||||++|++||++||++||++
T Consensus         1 mklai~Ll~~la~~s~iGt~ipQ~~~~~~y~~~~-------g~~~~~i~~~Lgl~~vy~S~wF~~ll~ll~~sL~~Cs~~   73 (464)
T PF05140_consen    1 MKLAIFLLLLLAIASIIGTLIPQGQPPEFYQQNY-------GPFWGPIFDRLGLFDVYSSWWFLLLLVLLALSLIACSID   73 (464)
T ss_pred             CcHHHHHHHHHHHHHhceeeecCCCcHHHHHHHh-------CchHHHHHHHcCCCceEecHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999999       778899999999999999999999999999999999999


Q ss_pred             CchhHHHHhhccccccChHhhhccCCccccc-----hhhHHHHHHHHhhCCeEEEeecc----eEEEEcCcccchhhHHH
Q 010998          187 TQIPLVKVARRWSFLHSAEAIRKQEFSDTLP-----RASIQDLGVILMGAGYEVFLKGP----SLYAFKGLVGRFAPIGV  257 (496)
Q Consensus       187 R~~~~~k~~r~~~~~~~p~~~~~~~~~~~~~-----~~~~~~v~~~L~~~gyrv~~~~~----~l~A~Kg~~~r~G~~l~  257 (496)
                      |++++||.+|+++....++.+++++.+.+++     ++..+++++.|+++||||.++++    .+||+||+|++||++++
T Consensus        74 R~~~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gyrv~~~~~~~~~~l~a~kg~~~~~G~~l~  153 (464)
T PF05140_consen   74 RLPPLWKALRRPPPPKPARFLKRMPLSATFPVPGDPEEALERLAALLKKKGYRVRRQEDGGGVFLYAEKGRWGRWGSLLF  153 (464)
T ss_pred             HHHHHHHHHcCCCCCCChhHhhcCCceEEEEcCCChHHHHHHHHHHHHhCCcEEEEecCCCcEEEEEEcCcchhhhHHHH
Confidence            9999999999998888888899999988864     67789999999999999988765    49999999999999999


Q ss_pred             HHHHHHHHHhhhcccccceEEEEEEeCCceeeecccc-CCCCCcCCCCCCcceEEEEccEEEEEecCCCeeeEEEEEEEE
Q 010998          258 HLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVL-GPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLF  336 (496)
Q Consensus       258 HlslvlILiG~llg~~~Gf~g~v~l~eGe~~~~~~~~-~~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~p~~f~Sdlti~  336 (496)
                      |+|||+||+|+++++++||+|++.++|||+++..... ..|.++    ...||+++||+|+++||++|+|++|+|||++.
T Consensus       154 Hlslivil~G~~~~~~~g~~g~~~l~eG~~~~~~~~~~~~g~~~----~~~~f~i~l~~F~~~~~~~g~~~~~~S~v~i~  229 (464)
T PF05140_consen  154 HLSLIVILIGALLGSLFGFRGQVMLPEGETFDIPYDSFESGPLF----QPLPFSIRLDDFTIEYYPNGSPKQYASDVTIL  229 (464)
T ss_pred             HHHHHHHHHHHHhhcccceeEEEEEecCCccccccccccccccc----cccceEEEEeeEEEEecccccccceEEEEEEE
Confidence            9999999999999999999999999999998765432 234322    34688999999999999999999999999999


Q ss_pred             ecCCceeEEEEEEeCcceEECCeEEEEccCCCce-eEEEeCCCc-------ceEeec---CccccCCCc----c-EEEEe
Q 010998          337 DIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSA-LQVLKNDEG-------PFNLAM---APLKVNGDK----K-LFGTF  400 (496)
Q Consensus       337 ~~~G~~v~~~~I~VN~PL~y~G~~~YQss~g~~~-v~v~~~~~~-------~~~l~~---~~~~~~g~~----~-~~~~~  400 (496)
                      +++|+++++++|+|||||+|+|++|||+||| ++ .+++...+.       ...++.   ......+..    . ....+
T Consensus       230 ~~~~~~~~~~~I~VN~Pl~~~G~~~YQss~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  308 (464)
T PF05140_consen  230 DGGGGEVKRATISVNHPLRYKGYRFYQSSYG-APGFTVTDTSGKLIFDSGQPQFLPQVPGDSISLPGGYQDGYQLQFWDF  308 (464)
T ss_pred             cCCCCcceeEEEEecccEEECCEEEEeccCC-CCceEEEecCCcccccccccccccccccceecccccCCCccEEEEEEE
Confidence            9765889999999999999999999999999 76 355543322       112222   111111111    1 12334


Q ss_pred             ecCCCCC-------CCCCcceeEEecCCceEEEEcCCC--------ceeeeecCCCCCceeeCCe---------------
Q 010998          401 LPLGDVN-------SPNVKGISMLARDLQSIVIYDQEG--------KFTGVRRPNSKLPIDIDGT---------------  450 (496)
Q Consensus       401 ~P~~~~~-------~~~~~~~~~~~~d~~~v~~~~~~g--------~~~~~~~l~~g~~i~l~g~---------------  450 (496)
                      +|.....       ++.+.+|++      .+.++++++        +.+.......++++..+++               
T Consensus       309 ~~~~~~~~~g~~~~s~~~~nPa~------~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (464)
T PF05140_consen  309 FPDFVPNDNGPPSKSPDPNNPAV------VLEVYDGDGGVDGSGEPQNVYFLNVPEGEQIAVGGYNQQAFNLMGLFLLPG  382 (464)
T ss_pred             EcccccccCCCcccCCCCCCceE------EEEEECCCCcceeccccceeEEecCcccchhhcccchhhhhcccccccCCC
Confidence            4432111       122333433      244555432        2223333433444445555               


Q ss_pred             --EEEEeeee--eeEEEEEeecCCchHHHHHHHHHHHHHhhh-hccceecC
Q 010998          451 --KIVIVDAI--GSTGLDLKTDPGVPIVYAGFGALMLTTCIS-FLSHTQTI  496 (496)
Q Consensus       451 --~i~f~~~~--~~tGLqVk~DPGvpiV~~Gf~Ll~lGL~ls-f~shrqi~  496 (496)
                        +++|++.+  +||||||++|||+|+||+||+++|+||+++ |++|||+.
T Consensus       383 ~~~v~~~~~~~~~~tGLqV~~DPG~~~V~~G~~llv~Gl~~sfy~~hRRvW  433 (464)
T PF05140_consen  383 PYRVTFDGFRQRYYTGLQVKKDPGVPIVYLGFILLVVGLFLSFYIRHRRVW  433 (464)
T ss_pred             ceEEEEEEeccceEEEEEEEeCCCchHHHHHHHHHHHHHHHhheecceEEE
Confidence              89999777  899999999999999999999999999999 57999973

Mutations in ResB indicate that they are essential for growth []. ResB is predicted to be a transmembrane protein.

>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-67  Score=547.90  Aligned_cols=378  Identities=29%  Similarity=0.437  Sum_probs=295.7

Q ss_pred             hhHHHHHHHHHHHHhheeEEeccC---CCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHHHHHHHHhhhh
Q 010998          107 LPLAIGEMAAIAALMALGTAIEQG---EVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC  183 (496)
Q Consensus       107 mklaI~LL~lLav~siiGTlipQ~---~~~~~y~~~y~~~~p~lG~~~~~~i~~Lgl~~vYsSwWF~~Ll~LL~inL~~C  183 (496)
                      ||+||+||++||++|++||++||+   ++.+.|..++       |+++|+|++.|||+|||+||||++|++||++||++|
T Consensus         1 mr~AI~LL~llaiaSi~GTvl~Q~~~N~~~~~y~~~f-------g~~~gq~~~~Lgl~~Vy~SwWfl~iivlL~VSLv~C   73 (478)
T COG1333           1 MRLAIALLLLLAIASIPGTVLPQRGLNQPYPDYYAEF-------GGLWGQWIDQLGLFDVYSSWWFLAIIVLLGVSLVGC   73 (478)
T ss_pred             ChhHHHHHHHHHHHhcccceeeccccCCCCcchHHHh-------CchHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhh
Confidence            799999999999999999999995   4444444444       667889999999999999999999999999999999


Q ss_pred             hhcCchhHHHHhhccccccChHhhhccCCccccc-----hhhHHHHHHHHhhCCeEEEee-cceEEEEcCcccchhhHHH
Q 010998          184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP-----RASIQDLGVILMGAGYEVFLK-GPSLYAFKGLVGRFAPIGV  257 (496)
Q Consensus       184 ti~R~~~~~k~~r~~~~~~~p~~~~~~~~~~~~~-----~~~~~~v~~~L~~~gyrv~~~-~~~l~A~Kg~~~r~G~~l~  257 (496)
                      +++|+++++|++| +++...|++++|++++.+++     +++.++++..|+++||+++++ +.+++||||+.+|||++++
T Consensus        74 ~lpr~~~~~ra~r-~~~~~~p~~l~r~~h~~~~~v~~~~~~~~~~i~~~L~~~~~kir~e~~~~i~AeKG~~~r~G~ii~  152 (478)
T COG1333          74 SLPRFPALYRALR-AKPVRAPRNLARLRHSAELDVKIDPEAVKAKIEKLLRGKGYKIREEGSVSIAAEKGRFSRWGPIIF  152 (478)
T ss_pred             cccccHHHHHHhh-cccccCchhHHhhhccCccccCCchHHHHHHHHHHHhcCCeEEEeccceeEEeccccccchhhHHH
Confidence            9999999999887 56789999999999998863     447889999999999999988 6799999999999999999


Q ss_pred             HHHHHHHHHhhhcc-cccceEEEEEEeCCcee-----eeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCeeeEEE
Q 010998          258 HLAMLLIMAGGTLS-ATGSFRGSVTVPQGLNF-----VVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHS  331 (496)
Q Consensus       258 HlslvlILiG~llg-~~~Gf~g~v~l~eGe~~-----~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~p~~f~S  331 (496)
                      |+|||+||+|++++ .+.|+....+|++||+.     ...+.++.|..++. ....||++++|+|.++|+++|++++|+|
T Consensus       153 HiaLliil~Gal~~~~~~Gm~~~~~V~~Ge~~~~~lpa~~~~fr~g~~~~~-~~l~~f~v~v~rf~~dy~~~g~~~~f~s  231 (478)
T COG1333         153 HIALLIILVGALLDFFYEGMVVGEIVPDGETNCSALPAANDKFRAGPTADG-TILLPFCVRVNRFGIDYLPTGQAYSFAS  231 (478)
T ss_pred             HHHHHHHHHHHHHhhcccceeEeEEecCCCcccccccccccccccCCccce-eeeehHHHHHHhcccccccccchhhhcC
Confidence            99999999999999 68899988899999998     22344555664443 2346899999999999999999999999


Q ss_pred             EEEEEecCCceeEEEEEEeCcceEECCeEEEEccCCCceeEEEeCCCcceEeecC---------c----cc-cCCC-ccE
Q 010998          332 DLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMA---------P----LK-VNGD-KKL  396 (496)
Q Consensus       332 dlti~~~~G~~v~~~~I~VN~PL~y~G~~~YQss~g~~~v~v~~~~~~~~~l~~~---------~----~~-~~g~-~~~  396 (496)
                      |+++.|.+++++.+++|+|||||+|+|++|||.+||.++........+..+.|..         .    .+ .+|. ..+
T Consensus       232 dI~v~~~~~~~~~~~~IrVN~PLr~~G~~vYq~d~G~~~~~t~~~~~~~~rt~~~~~~~~~~~~~l~~~fd~~~G~~v~i  311 (478)
T COG1333         232 DISVTDGQGEEVAEYTIRVNHPLRYGGVRVYQADYGIAPTFTVTFPLGATRTPTVLWRTDIPQTLLSSVFDPPNGMKVAI  311 (478)
T ss_pred             CceEEcCCcceeeeeeEEccCCEeecceEEEEecCccccceeEeccCcccccccccccccccccCccceecCCCcceEEe
Confidence            9999997789999999999999999999999999999985333211111111110         0    11 1222 235


Q ss_pred             EEEeecCCCCCCCCCcceeEEecCCc-eEEEEc-------CCCceee--eecCCCCCceeeCC---eEEEEeeeeeeEEE
Q 010998          397 FGTFLPLGDVNSPNVKGISMLARDLQ-SIVIYD-------QEGKFTG--VRRPNSKLPIDIDG---TKIVIVDAIGSTGL  463 (496)
Q Consensus       397 ~~~~~P~~~~~~~~~~~~~~~~~d~~-~v~~~~-------~~g~~~~--~~~l~~g~~i~l~g---~~i~f~~~~~~tGL  463 (496)
                      ++.+.|+......  ++++...++.+ ++.++|       .++....  ...+.+|++..+++   +++.|.+...+|||
T Consensus       312 ~g~~~Pt~~~~~~--~~~s~~~k~~~~Pav~~d~~~~~l~~~~~l~~~~rv~~~~g~~~~v~~~~~~~~~~~~~~~ftgl  389 (478)
T COG1333         312 QGLLIPTKQLNGR--NGLSSRFKNLNAPAVIIDIYRGRLTASGPLGEIERVALQAGQEVLVNDGPETKVGFLEAVGFTGL  389 (478)
T ss_pred             eccccCceeeccc--ccccccccccCCCEEEeehhhhhcccccccchhhhhhhccCceeeccCCcceeeeccccccccce
Confidence            6667785321110  11121122222 233344       3333322  12444677777765   35899999999999


Q ss_pred             EEeecCCchHHHHHHHHHHHHHhhhhc-cceec
Q 010998          464 DLKTDPGVPIVYAGFGALMLTTCISFL-SHTQT  495 (496)
Q Consensus       464 qVk~DPGvpiV~~Gf~Ll~lGL~lsf~-shrqi  495 (496)
                      ||++|||.||||.|++++|+|++.+++ .|||+
T Consensus       390 qV~~Dp~~~~v~vg~~i~Mvglv~s~~~~~rrv  422 (478)
T COG1333         390 QVSKDPGQPWVYVGGAILMVGLVQSLYWRHRRV  422 (478)
T ss_pred             eeccCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999976 45564

>PRK10369 heme lyase subunit NrfE; Provisional

Probab=98.13  E-value=4.7e-05  Score=83.75  Aligned_cols=73  Identities=14%  Similarity=0.175  Sum_probs=56.4

Q ss_pred             cchhhHHHHHHHHHHHHhhhcccccceEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCeeeE
Q 010998          250 GRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQF  329 (496)
Q Consensus       250 ~r~G~~l~HlslvlILiG~llg~~~Gf~g~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~p~~f  329 (496)
                      +++|.++.|+|+.++++|.+.++.++.+.++.+.+||+..++                +|+++.++.+.+-.+|-  ...
T Consensus       418 ~~~g~~laH~Gval~~~Gi~~ss~~~~e~~~~l~~G~~~~~~----------------~y~~~~~~~~~~~~~n~--~~~  479 (571)
T PRK10369        418 VQLPALLAHAGVLLFAAGIVVSSVSRQEISLNLQPGQQVTLA----------------GYTFRFERLDLQAKGNY--TSE  479 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccceeEEEEECCCCcEEEe----------------cEEEEEeeeeeccCCCc--eeE
Confidence            468999999999999999999999999999999999987653                24788888766544443  333


Q ss_pred             EEEEEEEecCCc
Q 010998          330 HSDLSLFDIGGK  341 (496)
Q Consensus       330 ~Sdlti~~~~G~  341 (496)
                      ++++++.+ ||+
T Consensus       480 ~a~~~v~~-~g~  490 (571)
T PRK10369        480 KAIIALFR-HQQ  490 (571)
T ss_pred             EEEEEEEE-CCE
Confidence            46677765 554

>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF

Probab=97.99  E-value=0.00012  Score=81.06  Aligned_cols=77  Identities=16%  Similarity=0.102  Sum_probs=60.0

Q ss_pred             cCcccchhhHHHHHHHHHHHHhhhcccccceEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCC
Q 010998          246 KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGE  325 (496)
Q Consensus       246 Kg~~~r~G~~l~HlslvlILiG~llg~~~Gf~g~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~  325 (496)
                      |...+++|.++.|+|+.++++|.+.++.++.+....+.+||+..++                +|+++.++.+....||..
T Consensus       421 ~~~~~~~g~~laH~Gval~~~Gi~~ss~~~~e~~~~L~pGet~~~~----------------~y~~~y~~~~~~~gpn~~  484 (576)
T TIGR00353       421 KIKRSQWGMLLAHLGVALTAAGIVFSQNFSVEIDVRLKPGQSVTLG----------------GYTFRFRCVDLEAGPNYT  484 (576)
T ss_pred             cCChhhhhhhhhHHHHHHHHHHHHHHcccceeEEEEECCCCcEEEc----------------CEEEEEeeeeecCCCCce
Confidence            3446789999999999999999999999999999999999987653                358888888776655554


Q ss_pred             eeeEEEEEEEEecCCc
Q 010998          326 VKQFHSDLSLFDIGGK  341 (496)
Q Consensus       326 p~~f~Sdlti~~~~G~  341 (496)
                      .  -++++++.+ ||+
T Consensus       485 a--~~a~~~V~k-~g~  497 (576)
T TIGR00353       485 G--EKAIIDVTK-DGQ  497 (576)
T ss_pred             E--EEEEEEEEE-CCE
Confidence            3  346666654 554

The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.

>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE

Probab=97.54  E-value=0.00069  Score=75.72  Aligned_cols=77  Identities=13%  Similarity=0.072  Sum_probs=59.4

Q ss_pred             cCcccchhhHHHHHHHHHHHHhhhcccccceEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCC
Q 010998          246 KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGE  325 (496)
Q Consensus       246 Kg~~~r~G~~l~HlslvlILiG~llg~~~Gf~g~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~~G~  325 (496)
                      |...+++|.++.|+|+.++++|.+.++.++.+-++.+.+||+..++                +|+++.++.+..-.||..
T Consensus       478 ~~~~~~~G~~laH~Gval~~~Gi~~ss~~~~e~~~~l~~Ge~~~~~----------------~y~~~~~~~~~~~~pn~~  541 (628)
T TIGR03145       478 TLKLRQLGMVLAHLGVAICAIGAIMVSYFGSEIGVRLAPQQQQPLG----------------GYEFRYQGFENVIGPNYT  541 (628)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHhccccceeEEEECCCCeEEEc----------------CEEEEEeeceecCCCCce
Confidence            3446789999999999999999999999999999999999987553                247887877665555543


Q ss_pred             eeeEEEEEEEEecCCc
Q 010998          326 VKQFHSDLSLFDIGGK  341 (496)
Q Consensus       326 p~~f~Sdlti~~~~G~  341 (496)
                        ..++++++.+ ||+
T Consensus       542 --~~~a~~~v~~-~g~  554 (628)
T TIGR03145       542 --AEQANFSVTK-NGK  554 (628)
T ss_pred             --eEEEEEEEEE-CCE
Confidence              3456777765 554

Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.

>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=92.60  E-value=0.31  Score=54.59  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=51.5

Q ss_pred             cCcccchhhHHHHHHHHHHHHhhhcccccceEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEec
Q 010998          246 KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYD  322 (496)
Q Consensus       246 Kg~~~r~G~~l~HlslvlILiG~llg~~~Gf~g~v~l~eGe~~~~~~~~~~g~~~~~~~~~~pf~i~l~~F~i~yy~  322 (496)
                      +-..+.+|..+.|++++++++|+++++.++++-.+.+.+|++..+.                .+++++++++.+..|
T Consensus       486 ~~~~s~~g~~LaH~Gv~l~~~Gi~~s~~~~~E~~v~l~~G~~~~l~----------------~y~~~~~~~~~~~gp  546 (648)
T COG1138         486 ALKRSAWGMVLAHLGVALIAVGIAMSSTYRYEREVRLRPGQSVTLA----------------GYTFTLDDVDIAQGP  546 (648)
T ss_pred             cCChhHHHHHHHHhhHHHhhhhhheehhhhheeeEEecCCceEEee----------------eEEEEEeeeeeccCC
Confidence            3446789999999999999999999999999999999999987653                247888888776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 46/292 (15%), Positives = 82/292 (28%), Gaps = 85/292 (29%)

Query: 4   LKPPTLPTRTHILK-APLLHSTFNPQLHTLFNR--------CITLSSTISCKLR--TSQD 52
            +P  LP    +L   P   S     +              C  L++ I   L      +
Sbjct: 313 CRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 53  VKKKKDNVSKKIVFSDSSP-PS-----LKNDEVSGEVESKNGVIGLVKRLPRRVLAALSN 106
            +K  D +S   VF  S+  P+     +  D +  +V        +V +L +  L     
Sbjct: 371 YRKMFDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMV------VVNKLHKYSLVEKQP 421

Query: 107 LPLAIG----------EMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWIL 156
               I           ++    AL    + ++   +P  +         +  +F      
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSH--- 476

Query: 157 TLGFDHM-----------FSSPIFLGL------LVMMGLSLMAC-----------TYTTQ 188
            +G  H+           F   +FL        +     +  A             Y   
Sbjct: 477 -IGH-HLKNIEHPERMTLFRM-VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 189 I----P----LVKVARRWSFLHSAEA-IRKQEFSDTLPRASIQDLGVILMGA 231
           I    P    LV       FL   E  +   +++D L  A + +   I   A
Sbjct: 534 ICDNDPKYERLVNAILD--FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00