Citrus Sinensis ID: 011011

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
Protein Sequence
MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Secondary Structure (PSIPRED)
cEEEEEEEcccccccccccccccEEcHHHHHHHcHHHHcccccccHHHHHHHHcccccccEEEEEEccccccccccEEEccHHHHHHHHHcccccccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccEEEEEccccccccccccccccccccccccccccccEEEEEEcccccccccccccEEEEccccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEEcccHHHHHcccccccccHHHHHHHHccccccEEEEEEcccccEEEEEEccHHHHHHHHHHcccccccHHHHHcHHHHHHHHHHHHHHccccccccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccccccccEEEEHHHHHHHcHHHHHHHHHccccHccccccccccccEEEEEEEcccccccccEEEcHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEEcHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHccEEEEEccccccccEEEEccccccccccccccccccEEEEEccccccccccccccEEEEEcccHcccccccHHHHHHHHccccccccccccEEccccccccccccccEEEEEcccccEEEEcccccccccHHHHHHHccccHcEEEEEcccccEEEEEEEccHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHHccccHHHcccEEEEccccEcccccEEc
Coil and Loop (DISEMBL)
MRFIILLwgkkssvapdiveeipvfsYDEIIDLGREsrkafsdsndarkhykyetigsddiatyvytsgttgnpkgvMLTHKNLLHQIRSLydivpaengdkflsmlppwhvyeRACGYFIFSRGIELMYTAVRNLKDDlqryqphymisvPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFcltrnqkqpSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIgiskagvsgggslpmHIDLFYEAIGVKVQVgygltesspviaarrptcnvlgsvghpinhteikivdaetnevlpagskgivkvrgsqvmqgyfknpsatkqaldedgwlntgdigwiaphhsrgrsrrcggvlvlegrakdtivlstgenveplELEEAALRSSLIRQIVVIgqdqrrpgaiivpdKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKwtskcsfqigpihvvdepftVNFLCLAL
Flexible Loop (DISEMBL)
mrfiillwgkkssvapdiveeipvFSYDEIIDLGResrkafsdsndarkhykyetigsddiaTYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGwiaphhsrgrsrrCGGVLVLegrakdtivlstgenveplELEEAALRSSLIRQIvvigqdqrrpgaiivpDKEEVLMAAKRLSIvhadaselskekTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Low Complexity Region (SEG)
MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSaarrvvaraliriSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHsrgrsrrcggVLVLEGRAKDTIVLSTGENVEPleleeaalRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered region (IsUnstruct)
**FIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGR*************KHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA*
Disordered Region (DISOPRED)
MRFIILLWGKKS******VEEIPVFSYDEIIDLGRESRKAFSDSN**RKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQK******AARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered Region (DISEMBL)
MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Disordered Region (DISPRO)
MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDS*DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	495	2.2.26 [Sep-21-2011]
Q9LK39	722	Probable acyl-activating	yes	no	0.981	0.673	0.693	0.0
Q8W471	727	Long-chain-fatty-acid--[a	no	no	0.963	0.656	0.678	0.0
P44446	607	Putative long-chain-fatty	yes	no	0.723	0.589	0.313	2e-42
B2HGV4	600	Long-chain-fatty-acid--Co	no	no	0.668	0.551	0.311	1e-40
Q7TYX8	600	Long-chain-fatty-acid--Co	no	no	0.660	0.545	0.310	2e-39
O53521	600	Long-chain-fatty-acid--Co	yes	no	0.660	0.545	0.307	1e-38
P33121	698	Long-chain-fatty-acid--Co	yes	no	0.765	0.542	0.286	1e-37
P41216	699	Long-chain-fatty-acid--Co	yes	no	0.785	0.556	0.282	2e-37
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.769	0.543	0.294	2e-37
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.822	0.581	0.297	5e-37

>sp|Q9LK39|AAE16_ARATH Probable acyl-activating enzyme 16, chloroplastic OS=Arabidopsis thaliana GN=AAE16 PE=2 SV=1

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/489 (69%), Positives = 408/489 (83%), Gaps = 3/489 (0%)

Query: 2   RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI 61
           +F+ILLWG+KSS+        PV+SY+EI   G+E R  F+ SND+ K Y+YE I  DDI
Sbjct: 208 KFVILLWGEKSSLV-TAGRHTPVYSYNEIKKFGQERRAKFARSNDSGK-YEYEYIDPDDI 265

Query: 62  ATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI 121
           AT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSMLP WH YERAC YFI
Sbjct: 266 ATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFI 325

Query: 122 FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI 181
           F+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYETLYSGIQKQI  SS AR+ +A  LI
Sbjct: 326 FTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYETLYSGIQKQISASSPARKFLALTLI 385

Query: 182 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 241
           ++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+
Sbjct: 386 KVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIR 445

Query: 242 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP 301
           S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHP
Sbjct: 446 SSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHP 505

Query: 302 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
           I  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GW
Sbjct: 506 IKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGW 565

Query: 362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ 421
           I P HS GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS+LI+QIVVIGQDQ
Sbjct: 566 ITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQ 625

Query: 422 RRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 480
           RR GAI++P+KE    AAK ++S V ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ 
Sbjct: 626 RRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKETITSMVYEELRKWTSQCSFQVGPVL 685

Query: 481 VVDEPFTVN 489
           +VDEPFT++
Sbjct: 686 IVDEPFTID 694

May be involved in the activation of fatty acids to acyl-carrier-protein.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q8W471|AAE15_ARATH Long-chain-fatty-acid--[acyl-carrier-protein] ligase AEE15, chloroplastic OS=Arabidopsis thaliana GN=AAE15 PE=1 SV=1

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/489 (67%), Positives = 400/489 (81%), Gaps = 12/489 (2%)

Query: 1   MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD 60
           +RF+ILLWG+KSS+    ++ IPV+SY EII+ G+ESR   S SND R  Y+ + I SDD
Sbjct: 223 LRFLILLWGEKSSLVTQGMQ-IPVYSYAEIINQGQESRAKLSASNDTRS-YRNQFIDSDD 280

Query: 61  IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF 120
            A  +YTSGTTGNPKGVMLTH+NLLHQI+ L   VPA+ GDKFLSMLP WH YERA  YF
Sbjct: 281 TAAIMYTSGTTGNPKGVMLTHRNLLHQIKHLSKYVPAQAGDKFLSMLPSWHAYERASEYF 340

Query: 121 IFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARAL 180
           IF+ G+E MYT++R LKDDL+RYQP+Y++SVPLVYETLYSGIQKQI  SSA R+ +A  L
Sbjct: 341 IFTCGVEQMYTSIRYLKDDLKRYQPNYIVSVPLVYETLYSGIQKQISASSAGRKFLALTL 400

Query: 181 IRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKI 240
           I++S AY   KRIYEG CLT+ QK P Y+VA +DWLWAR+I A+LWPLH+LA+KL+YKKI
Sbjct: 401 IKVSMAYMEMKRIYEGMCLTKEQKPPMYIVAFVDWLWARVIAALLWPLHMLAKKLIYKKI 460

Query: 241 QSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGH 300
            S+IGISKAG+SGGGSLP+H+D F+EAIGV +Q GYGLTE+SPV+ AR  +CNVLGS GH
Sbjct: 461 HSSIGISKAGISGGGSLPIHVDKFFEAIGVILQNGYGLTETSPVVCARTLSCNVLGSAGH 520

Query: 301 PINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG 360
           P++ TE KIVD ETN VLP GSKGI+KVRG QVM+GY+KNPS TKQ L+E GW NTGD G
Sbjct: 521 PMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGYYKNPSTTKQVLNESGWFNTGDTG 580

Query: 361 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD 420
           WIAPHHS+GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS +I QIVVIGQD
Sbjct: 581 WIAPHHSKGRSRHCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSRVIEQIVVIGQD 640

Query: 421 QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 480
           +RR GAII+P+KEE    A+R+        E SKE   SL+Y ELRKWTS+CSFQ+GP+ 
Sbjct: 641 RRRLGAIIIPNKEE----AQRVD------PETSKETLKSLVYQELRKWTSECSFQVGPVL 690

Query: 481 VVDEPFTVN 489
           +VD+PFT++
Sbjct: 691 IVDDPFTID 699

Probably involved in the activation of fatty acids to acyl-carrier-protein prior to fatty acid elongation in plastids. Acts on medium- to long-chain fatty acids.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 0

>sp|P44446|LCFH_HAEIN Putative long-chain-fatty-acid--CoA ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0002 PE=3 SV=1

 Score =  174 bits (441), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 127/405 (31%), Positives = 191/405 (47%), Gaps = 47/405 (11%)

Query: 60  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY 119
           D+ T +YTSGTTG PKGVML + NL HQ+ +    +   + D  LS LP  H++ERA   
Sbjct: 186 DLFTIIYTSGTTGEPKGVMLDYANLAHQLETHDLSLNVTDQDISLSFLPFSHIFERAWAA 245

Query: 120 FIFSRGIELMYTAVRN-LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVAR 178
           +I  RG  L Y    N ++  L   +P  M +VP  YE +Y+ +  ++  +   R+++  
Sbjct: 246 YILHRGAILCYLEDTNQVRSALTEIRPTLMCAVPRFYEKIYAAVLDKVQKAPKLRQIMFH 305

Query: 179 ALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYK 238
             I +   Y         F L  N K   +L               L     LA+KLV  
Sbjct: 306 WAISVGQKY---------FDLRANNKAIPFL---------------LKKQFALADKLVLS 341

Query: 239 KIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS 297
           K++  +G   K    GG  L   I LF+ AIG+ +++GYG+TE++  ++          S
Sbjct: 342 KLRQLLGGRIKMMPCGGAKLEPAIGLFFHAIGINIKLGYGMTETTATVSCWHDFQFNPNS 401

Query: 298 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 357
           +G  +   E+KI   E NE+L         VRG  VM+GY+K P  T QA  EDG+L TG
Sbjct: 402 IGTLMPKAEVKI--GENNEIL---------VRGGMVMKGYYKKPEETAQAFTEDGFLKTG 450

Query: 358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 417
           D G               G L +  R K+ +  S G+ + P  +E    +   I QI +I
Sbjct: 451 DAGEFDEQ----------GNLFITDRIKELMKTSNGKYIAPQYIESKIGKDKFIEQIAII 500

Query: 418 GQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLY 462
              ++   A+IVP  + +   AK+L+I + D  EL K   I  ++
Sbjct: 501 ADAKKYVSALIVPCFDSLEEYAKQLNIKYHDRLELLKNSDILKMF 545

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|B2HGV4|FAC15_MYCMM Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=fadD15 PE=3 SV=1

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 184/388 (47%), Gaps = 57/388 (14%)

Query: 52  KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPP 109
           + + + S D AT +YTSGTTG PKG  LTH NLLH+IR   + +P     G + L  LP 
Sbjct: 174 RLDALRSSDPATLIYTSGTTGRPKGCQLTHSNLLHEIRGTQECLPTLLTPGQRLLVFLPL 233

Query: 110 WHVYERACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFT 168
            HV  RA     F+  + + +T+ ++NL      ++P  ++SVP V+E +Y+  ++    
Sbjct: 234 AHVLARALTLSAFASKVTVGFTSDIKNLLPLFAVFKPTVVVSVPRVFEKVYNTAEQNASN 293

Query: 169 SS--AARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW 226
               A  ++ A+  +  S A+              +  +P  L               L 
Sbjct: 294 DGKGAIFKLAAQTAVDWSRAW--------------DDGRPGLL---------------LR 324

Query: 227 PLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVI 285
             H L ++LVY K+++A+G    A VSGG  L   +  FY  +G+ +  GYGLTE+S  +
Sbjct: 325 AKHALFDRLVYHKLRAALGGDCHAAVSGGAPLGARLGHFYRGVGLTIYEGYGLTETSAAV 384

Query: 286 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 345
              +     +G+VG  +    ++I D            G + VRG  V  GY++N  AT 
Sbjct: 385 TVNQIDALKIGTVGKLVPGNSLRIAD-----------DGELLVRGGVVFSGYWRNEQATD 433

Query: 346 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 405
           +A   DGW  TGD+G I             G L + GR K+ IV + G+NV P  LE+  
Sbjct: 434 EAF-TDGWFRTGDLGAIDDD----------GFLSITGRKKELIVTAGGKNVAPAVLEDQL 482

Query: 406 LRSSLIRQIVVIGQDQRRPGAIIVPDKE 433
               LI Q +V+G  +   GA+I  D E
Sbjct: 483 RAHPLISQAMVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium marinum (strain ATCC BAA-535 / M) (taxid: 216594)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q7TYX8|FAC15_MYCBO Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fadD15 PE=3 SV=2

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 181/380 (47%), Gaps = 53/380 (13%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYER 115
           S D AT +YTSGTTG PKG  LT  NL+H+I+      P     G++ L  LP  HV  R
Sbjct: 180 STDPATLIYTSGTTGRPKGCQLTQSNLVHEIKGARAYHPTLLRKGERLLVFLPLAHVLAR 239

Query: 116 ACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 174
           A     F   + + +T+ ++NL   L  ++P  ++SVP V+E +Y+  ++    +   R 
Sbjct: 240 AISMAAFHSKVTVGFTSDIKNLLPMLAVFKPTVVVSVPRVFEKVYNTAEQNAANAGKGRI 299

Query: 175 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 234
               A   + ++           C   ++  P  L               L   H + ++
Sbjct: 300 FAIAAQTAVDWSEA---------C---DRGGPGLL---------------LRAKHAVFDR 332

Query: 235 LVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN 293
           LVY+K+++A+G + +A VSGG  L   +  FY   G+ +  GYGL+E+S  +A  +    
Sbjct: 333 LVYRKLRAALGGNCRAAVSGGAPLGARLGHFYRGAGLTIYEGYGLSETSGGVAISQFNDL 392

Query: 294 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW 353
            +G+VG P+    ++I D            G + VRG  V  GY++N  AT +A   DGW
Sbjct: 393 KIGTVGKPVPGNSLRIAD-----------DGELLVRGGVVFSGYWRNEQATTEAF-TDGW 440

Query: 354 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 413
             TGD+G +             G L + GR K+ IV + G+NV P  LE+      LI Q
Sbjct: 441 FKTGDLGAVDED----------GFLTITGRKKEIIVTAGGKNVAPAVLEDQLRAHPLISQ 490

Query: 414 IVVIGQDQRRPGAIIVPDKE 433
            VV+G  +   GA+I  D E
Sbjct: 491 AVVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium bovis (taxid: 1765)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O53521|FAC15_MYCTU Long-chain-fatty-acid--CoA ligase FadD15 OS=Mycobacterium tuberculosis GN=fadD15 PE=1 SV=3

 Score =  161 bits (407), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/380 (30%), Positives = 180/380 (47%), Gaps = 53/380 (13%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYER 115
           S D AT +YTSGTTG PKG  LT  NL+H+I+      P     G++ L  LP  HV  R
Sbjct: 180 STDPATLIYTSGTTGRPKGCQLTQSNLVHEIKGARAYHPTLLRKGERLLVFLPLAHVLAR 239

Query: 116 ACGYFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 174
           A     F   + + +T+ ++NL   L  ++P  ++SVP V+E +Y+  ++    +   R 
Sbjct: 240 AISMAAFHSKVTVGFTSDIKNLLPMLAVFKPTVVVSVPRVFEKVYNTAEQNAANAGKGRI 299

Query: 175 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 234
               A   + ++           C   ++  P  L               L   H + ++
Sbjct: 300 FAIAAQTAVDWSEA---------C---DRGGPGLL---------------LRAKHAVFDR 332

Query: 235 LVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN 293
           LVY+K+++A+G + +A VSGG  L   +  FY   G+ +  GYGL+ +S  +A  +    
Sbjct: 333 LVYRKLRAALGGNCRAAVSGGAPLGARLGHFYRGAGLTIYEGYGLSGTSGGVAISQFNDL 392

Query: 294 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW 353
            +G+VG P+    ++I D            G + VRG  V  GY++N  AT +A   DGW
Sbjct: 393 KIGTVGKPVPGNSLRIAD-----------DGELLVRGGVVFSGYWRNEQATTEAF-TDGW 440

Query: 354 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 413
             TGD+G +             G L + GR K+ IV + G+NV P  LE+      LI Q
Sbjct: 441 FKTGDLGAVDED----------GFLTITGRKKEIIVTAGGKNVAPAVLEDQLRAHPLISQ 490

Query: 414 IVVIGQDQRRPGAIIVPDKE 433
            VV+G  +   GA+I  D E
Sbjct: 491 AVVVGDAKPFIGALITIDPE 510

Catalyzes the activation of long-chain fatty acids as acyl-coenzyme A (acyl-CoA), which are then transferred to the multifunctional polyketide synthase (PKS) type III for further chain extension.

Mycobacterium tuberculosis (taxid: 1773)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1

 Score =  158 bits (399), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/446 (28%), Positives = 198/446 (44%), Gaps = 67/446 (15%)

Query: 22  IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTH 81
           + V S   + DLGR +R+            K +    +D+A   +TSGTTGNPKG M+TH
Sbjct: 243 VEVTSMKAMEDLGRANRR------------KPKPPAPEDLAVICFTSGTTGNPKGAMVTH 290

Query: 82  KNLLHQ----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRN 135
           +N++      +++  + V     D  +S LP  H++ER     +   G ++ +    +R 
Sbjct: 291 RNIVSDCSAFVKATENTVNPCPDDTLISFLPLAHMFERVVECVMLCHGAKIGFFQGDIRL 350

Query: 136 LKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYE 195
           L DDL+  QP     VP +   ++  I  Q                    A T  KR   
Sbjct: 351 LMDDLKVLQPTVFPVVPRLLNRMFDRIFGQ--------------------ANTTLKRWLL 390

Query: 196 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGG 254
            F   R + +    +   + LW R               L++ K+QS++G   +  V+G 
Sbjct: 391 DFASKRKEAELRSGIIRNNSLWDR---------------LIFHKVQSSLGGRVRLMVTGA 435

Query: 255 GSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAE 313
             +   +  F  A +G +   GYG TE +       P     G VG P+    IK+VD E
Sbjct: 436 APVSATVLTFLRAALGCQFYEGYGQTECTAGCCLTMPGDWTAGHVGAPMPCNLIKLVDVE 495

Query: 314 TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRR 373
               + A  +G V V+G  V QGY K+P+ T +ALD+DGWL+TGDIG   P+        
Sbjct: 496 EMNYMAAEGEGEVCVKGPNVFQGYLKDPAKTAEALDKDGWLHTGDIGKWLPN-------- 547

Query: 374 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDK 432
             G L +  R K    L+ GE + P ++E   +RS  + Q+ V G+  Q    AI+VPD 
Sbjct: 548 --GTLKIIDRKKHIFKLAQGEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDV 605

Query: 433 EEVLMAAKRLSIVHADASELSKEKTI 458
           E +   A++         EL + K +
Sbjct: 606 ETLCSWAQKRGF-EGSFEELCRNKDV 630

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitoleate, oleate and linoleate.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 206/463 (44%), Gaps = 74/463 (15%)

Query: 12  SSVAPDIVEE-----IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY 66
            S   D+VE      + + S   + DLGR +R             K +    +D+A   +
Sbjct: 229 DSYGSDLVERGKKCGVEIISLKALEDLGRVNR------------VKPKPPEPEDLAIICF 276

Query: 67  TSGTTGNPKGVMLTHKNLLHQ----IRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIF 122
           TSGTTGNPKG M+TH+N+++     I++      A   D  +S LP  H++E      + 
Sbjct: 277 TSGTTGNPKGAMITHQNIINDCSGFIKATESAFIASTDDVLISFLPLAHMFETVVECVML 336

Query: 123 SRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARAL 180
             G ++ +    +R L DDL+  QP     VP +   ++  I  Q               
Sbjct: 337 CHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQ--------------- 381

Query: 181 IRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKI 240
                A T+ KR    F   R + +    +   + LW               +KL++ KI
Sbjct: 382 -----ANTSLKRWLLDFASKRKEAELRSGIVRNNSLW---------------DKLIFHKI 421

Query: 241 QSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS 297
           QS++G  K  +   G+ P+    +     A+G +   GYG TE +       P     G 
Sbjct: 422 QSSLG-GKVRLMITGAAPVSATVLTFLRTALGCQFYEGYGQTECTAGCCLSLPGDWTAGH 480

Query: 298 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 357
           VG P+    +K+VD E    L +  +G V V+G+ V +GY K+P+ T +ALD+DGWL+TG
Sbjct: 481 VGAPMPCNYVKLVDVEEMNYLASKGEGEVCVKGANVFKGYLKDPARTAEALDKDGWLHTG 540

Query: 358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 417
           DIG   P+          G L +  R K    L+ GE + P ++E   LRS  + Q+ V 
Sbjct: 541 DIGKWLPN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYLRSEAVAQVFVH 590

Query: 418 GQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS 459
           G+  Q    A++VPD E +   A++  +      EL + K I+
Sbjct: 591 GESLQAFLIAVVVPDVESLPSWAQKRGL-QGSFEELCRNKDIN 632

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 196/445 (44%), Gaps = 64/445 (14%)

Query: 22  IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTH 81
           + V SY  +++ GR + + F                 DD+AT  YTSGTTG PKGV+LTH
Sbjct: 236 VKVVSYSVLLNQGRSNPQRFFPPK------------PDDVATICYTSGTTGTPKGVVLTH 283

Query: 82  KNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLK--DD 139
            NL+  +      V   + D ++S LP  H+YERA        G+ + +    N+K  DD
Sbjct: 284 ANLIANVAGSSFSVKFFSSDVYISYLPLAHIYERANQILTVYFGVAVGFYQGDNMKLLDD 343

Query: 140 LQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCL 199
           L   +P    SVP +Y  +Y+GI   + TS   +  +  A      AY A K+       
Sbjct: 344 LAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFNA------AYNAKKQ------- 390

Query: 200 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGS--L 257
                      AL++   A  I    W      ++LV+ KI+  +G     ++ G S   
Sbjct: 391 -----------ALLNGKSASPI----W------DRLVFNKIKDRLGGRVRFMTSGASPLS 429

Query: 258 PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEV 317
           P  ++      G +V  GYG+TE+S VI+      N+ G VG P    E+K+VD      
Sbjct: 430 PEVMEFLKVCFGGRVTEGYGMTETSCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489

Query: 318 LPAGS---KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 374
             A     +G + VRG  +  GY+K+   TK+ +DEDGWL+TGDIG   P          
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLWLP---------- 539

Query: 375 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEE 434
           GG L +  R K+   L+ GE + P ++E    +   + Q  + G         +V    +
Sbjct: 540 GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVGQCFIYGDSFNSSLVAVVSVDPD 599

Query: 435 VLMA-AKRLSIVHADASELSKEKTI 458
           VL + A    I   D  EL     +
Sbjct: 600 VLKSWAASEGIKGGDLRELCNNPRV 624

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  155 bits (393), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 144/484 (29%), Positives = 214/484 (44%), Gaps = 77/484 (15%)

Query: 22  IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTH 81
           + + SY +++  GR S   FS                +DIAT  YTSGTTG PKGV+LTH
Sbjct: 236 VTIVSYQKLLSQGRSSLHPFSPPK------------PEDIATICYTSGTTGTPKGVVLTH 283

Query: 82  KNLLHQIRSLYDIVPAE--NGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLK 137
            NL+  +      V AE    D ++S LP  H+YERA        G+ + +    V  L 
Sbjct: 284 GNLIANVAG--SSVEAEFFPSDVYISYLPLAHIYERANQIMGVYGGVAVGFYQGDVFKLM 341

Query: 138 DDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGF 197
           DD    +P    SVP +Y  +Y GI   + +S     VV + L  I  AY + K+     
Sbjct: 342 DDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSG----VVKKRLFEI--AYNSKKQA---- 391

Query: 198 CLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSL 257
               N + PS                  W      +KLV+ KI+  +G  +    G G+ 
Sbjct: 392 --IINGRTPS----------------AFW------DKLVFNKIKEKLG-GRVRFMGSGAS 426

Query: 258 PMH---IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAE- 313
           P+    +D      G  V+ GYG+TE+S VI+A     N+ G VG P    E+K+VD   
Sbjct: 427 PLSPDVMDFLRICFGCSVREGYGMTETSCVISAMDDGDNLSGHVGSPNPACEVKLVDVPE 486

Query: 314 ---TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 370
              T++  P   +G + VRG  + +GY+K+   T++ LD DGWL+TGDIG   P      
Sbjct: 487 MNYTSDDQPY-PRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLP------ 539

Query: 371 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVP 430
               GG L +  R K+   L+ GE + P ++E    +   + Q  + G         IV 
Sbjct: 540 ----GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYTKCRFVSQCFIHGDSFNSSLVAIVS 595

Query: 431 DKEEVLMA-AKRLSIVHADASELSKE----KTISLLYGELRKWTSKCSFQIG-PIHVVDE 484
              EV+   A    I +    +L  +    KT+     +L +      F+    + +V E
Sbjct: 596 VDPEVMKDWAASEGIKYEHLGQLCNDPRVRKTVLAEMDDLGREAQLRGFEFAKAVTLVPE 655

Query: 485 PFTV 488
           PFT+
Sbjct: 656 PFTL 659

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
224129204	706	predicted protein [Populus trichocarpa]	0.985	0.691	0.75	0.0
296089272	730	unnamed protein product [Vitis vinifera]	0.987	0.669	0.736	0.0
225439252	691	PREDICTED: long-chain-fatty-acid--CoA li	0.987	0.707	0.736	0.0
224055821	694	predicted protein [Populus trichocarpa]	0.985	0.703	0.731	0.0
356512427	733	PREDICTED: putative acyl-CoA synthetase	0.987	0.667	0.709	0.0
449527657	672	PREDICTED: probable acyl-activating enzy	0.987	0.727	0.687	0.0
449441378	731	PREDICTED: probable acyl-activating enzy	0.987	0.668	0.687	0.0
22331297	722	AMP-dependent synthetase and ligase fami	0.981	0.673	0.693	0.0
20799733	722	acyl-CoA synthetase-like protein [Arabid	0.981	0.673	0.693	0.0
357462831	720	Annotation was added to scaffolds in Nov	0.987	0.679	0.681	0.0

>gi|224129204|ref|XP_002328916.1| predicted protein [Populus trichocarpa] gi|222839346|gb|EEE77683.1| predicted protein [Populus trichocarpa]

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/488 (75%), Positives = 423/488 (86%)

Query: 2   RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI 61
           RF+ILLWG+KS +A + +E IP+FSY EIIDLG+ES KAFSDS+DAR+HYKYETI SDDI
Sbjct: 191 RFVILLWGEKSHLAINRMEGIPIFSYKEIIDLGQESCKAFSDSDDARQHYKYETISSDDI 250

Query: 62  ATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI 121
           AT VYTSGTTGNPKGVMLTHKNLLHQI +L+D+VPA+  D+FLSMLPPWH YERA  YFI
Sbjct: 251 ATLVYTSGTTGNPKGVMLTHKNLLHQINNLWDVVPAQPADRFLSMLPPWHAYERAAEYFI 310

Query: 122 FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI 181
           F+ G E +YT VRNLK DLQ+YQPHY+I+VPLV+ETLYSGIQKQ+ TSSA R+++A   I
Sbjct: 311 FTHGTEQVYTTVRNLKVDLQQYQPHYLITVPLVFETLYSGIQKQLSTSSALRKILAFMFI 370

Query: 182 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 241
           +IS  Y   KRIYEG  L R++K+P Y V+++DWLWARII AIL P+H+LA+KLVY KI 
Sbjct: 371 KISLTYMEMKRIYEGTYLVRSRKEPPYFVSMLDWLWARIIAAILLPVHMLAKKLVYSKIH 430

Query: 242 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP 301
           SAIGISKAGVSGGGSLP H+D F+EAIGV VQ GYG+TESSPV AARRP+ NVLGS+G P
Sbjct: 431 SAIGISKAGVSGGGSLPSHVDKFFEAIGVVVQNGYGMTESSPVTAARRPSNNVLGSIGLP 490

Query: 302 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
           I HTE KIVDAET E LP GSKGIVKVRG QVM+GY+KNP ATKQA+DEDGWLN+GDIGW
Sbjct: 491 IRHTEFKIVDAETGEALPHGSKGIVKVRGPQVMKGYYKNPLATKQAVDEDGWLNSGDIGW 550

Query: 362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ 421
           IAP+HSRGRSR CGGV+VLEGRAKDTIVL TGENVEPLELEEAA+RSSLI+QIVVIGQDQ
Sbjct: 551 IAPYHSRGRSRHCGGVIVLEGRAKDTIVLLTGENVEPLELEEAAMRSSLIQQIVVIGQDQ 610

Query: 422 RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHV 481
           RR GAI+VP+K+EVL AAK+ SIV  DA+ELSK++  SLL  ELRKWTS CSFQIGPI V
Sbjct: 611 RRLGAIVVPNKDEVLEAAKKWSIVDPDATELSKKQITSLLNEELRKWTSGCSFQIGPILV 670

Query: 482 VDEPFTVN 489
           +DEPFT++
Sbjct: 671 IDEPFTID 678

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089272|emb|CBI39044.3| unnamed protein product [Vitis vinifera]

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/489 (73%), Positives = 417/489 (85%)

Query: 1   MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD 60
           +RF++LLWG+KS +  ++++ +PVF+Y EIIDLGRE R  F DS+ ARK+Y YE I S+D
Sbjct: 214 IRFVVLLWGEKSCLPSEVMDRVPVFNYKEIIDLGRECRSVFLDSHYARKNYIYEAISSND 273

Query: 61  IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF 120
           IAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPAE GD+FLSMLP WH YERA  YF
Sbjct: 274 IATLVYTSGTTGNPKGVMLTHQNLLHQIKNLWDIVPAEPGDRFLSMLPSWHAYERASEYF 333

Query: 121 IFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARAL 180
           IF+ GIE +YT V NLK+DL+RYQP Y+ISVPLVYETLYSGIQKQI TSS  R++VA   
Sbjct: 334 IFTHGIEQVYTTVPNLKEDLRRYQPQYLISVPLVYETLYSGIQKQISTSSTVRKLVALTF 393

Query: 181 IRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKI 240
           IRIS AY   KRIYEG  L ++QKQ SY+ ++ DWLWA+II AILWP+H+L +KLVY KI
Sbjct: 394 IRISLAYMELKRIYEGKFLQKSQKQYSYIASIFDWLWAKIIAAILWPVHMLGKKLVYSKI 453

Query: 241 QSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGH 300
            SAIGISKAGVSGGGSLP H+D F+EAI +KVQ GYGLTE SPV AARRPTCNVLGSVGH
Sbjct: 454 HSAIGISKAGVSGGGSLPSHVDRFFEAIDIKVQNGYGLTECSPVTAARRPTCNVLGSVGH 513

Query: 301 PINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG 360
           PI HTEIKIVD+ET+E+LP GSKGIVKV+G  VM+GY+KN  ATK+ LDEDGWLNTGDIG
Sbjct: 514 PIRHTEIKIVDSETDELLPPGSKGIVKVKGPHVMKGYYKNELATKKVLDEDGWLNTGDIG 573

Query: 361 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD 420
           WIAPHHS GRSR CGGV+VLEGRAKDTIVLSTGENVEP ELEEAA+RS+LI+QIVVIGQD
Sbjct: 574 WIAPHHSVGRSRHCGGVIVLEGRAKDTIVLSTGENVEPTELEEAAMRSTLIQQIVVIGQD 633

Query: 421 QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 480
           QRR GAIIVP+KEEVL AAKRLSI++A+ SELSKEK   LL+ E+R WT   SFQIGPI 
Sbjct: 634 QRRLGAIIVPNKEEVLAAAKRLSILNANTSELSKEKITGLLHEEIRTWTEGFSFQIGPIL 693

Query: 481 VVDEPFTVN 489
           VVDEPFT++
Sbjct: 694 VVDEPFTID 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439252|ref|XP_002263501.1| PREDICTED: long-chain-fatty-acid--CoA ligase FadD15-like [Vitis vinifera]

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/489 (73%), Positives = 417/489 (85%)

Query: 1   MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD 60
           +RF++LLWG+KS +  ++++ +PVF+Y EIIDLGRE R  F DS+ ARK+Y YE I S+D
Sbjct: 175 IRFVVLLWGEKSCLPSEVMDRVPVFNYKEIIDLGRECRSVFLDSHYARKNYIYEAISSND 234

Query: 61  IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF 120
           IAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPAE GD+FLSMLP WH YERA  YF
Sbjct: 235 IATLVYTSGTTGNPKGVMLTHQNLLHQIKNLWDIVPAEPGDRFLSMLPSWHAYERASEYF 294

Query: 121 IFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARAL 180
           IF+ GIE +YT V NLK+DL+RYQP Y+ISVPLVYETLYSGIQKQI TSS  R++VA   
Sbjct: 295 IFTHGIEQVYTTVPNLKEDLRRYQPQYLISVPLVYETLYSGIQKQISTSSTVRKLVALTF 354

Query: 181 IRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKI 240
           IRIS AY   KRIYEG  L ++QKQ SY+ ++ DWLWA+II AILWP+H+L +KLVY KI
Sbjct: 355 IRISLAYMELKRIYEGKFLQKSQKQYSYIASIFDWLWAKIIAAILWPVHMLGKKLVYSKI 414

Query: 241 QSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGH 300
            SAIGISKAGVSGGGSLP H+D F+EAI +KVQ GYGLTE SPV AARRPTCNVLGSVGH
Sbjct: 415 HSAIGISKAGVSGGGSLPSHVDRFFEAIDIKVQNGYGLTECSPVTAARRPTCNVLGSVGH 474

Query: 301 PINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG 360
           PI HTEIKIVD+ET+E+LP GSKGIVKV+G  VM+GY+KN  ATK+ LDEDGWLNTGDIG
Sbjct: 475 PIRHTEIKIVDSETDELLPPGSKGIVKVKGPHVMKGYYKNELATKKVLDEDGWLNTGDIG 534

Query: 361 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD 420
           WIAPHHS GRSR CGGV+VLEGRAKDTIVLSTGENVEP ELEEAA+RS+LI+QIVVIGQD
Sbjct: 535 WIAPHHSVGRSRHCGGVIVLEGRAKDTIVLSTGENVEPTELEEAAMRSTLIQQIVVIGQD 594

Query: 421 QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 480
           QRR GAIIVP+KEEVL AAKRLSI++A+ SELSKEK   LL+ E+R WT   SFQIGPI 
Sbjct: 595 QRRLGAIIVPNKEEVLAAAKRLSILNANTSELSKEKITGLLHEEIRTWTEGFSFQIGPIL 654

Query: 481 VVDEPFTVN 489
           VVDEPFT++
Sbjct: 655 VVDEPFTID 663

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055821|ref|XP_002298670.1| predicted protein [Populus trichocarpa] gi|222845928|gb|EEE83475.1| predicted protein [Populus trichocarpa]

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/488 (73%), Positives = 418/488 (85%)

Query: 2   RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI 61
           RF+ILLWG+KSS+  + +E IP+F+Y EIIDLGRESRKAF DS DAR+HYKYETI SDDI
Sbjct: 179 RFVILLWGEKSSLTINAMEGIPIFNYKEIIDLGRESRKAFFDSGDARQHYKYETISSDDI 238

Query: 62  ATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI 121
           AT VYTSGTTGNPKGVMLTHKNLLHQI + ++IVPA+  D+FLSMLPPWH YERAC YFI
Sbjct: 239 ATLVYTSGTTGNPKGVMLTHKNLLHQINNFWEIVPAQPADRFLSMLPPWHAYERACEYFI 298

Query: 122 FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI 181
           F+ G E +YT VRN K DLQ+YQPHY+ISVPLV+ETLYSGIQKQI  SS  R+++A   I
Sbjct: 299 FANGAEQVYTTVRNFKVDLQQYQPHYLISVPLVFETLYSGIQKQISKSSTLRKLLAFTFI 358

Query: 182 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 241
           +IS AY   KRIYEG  LTR+Q + SY V+++ WL ARI  AIL P+H+LAEKLVY KIQ
Sbjct: 359 KISLAYMEMKRIYEGTYLTRSQNEQSYFVSILGWLRARIFAAILLPVHMLAEKLVYSKIQ 418

Query: 242 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP 301
           SAIGI KAGVSGGGSLP H+D F+EAIGV +  GYG+TESSPV+AAR+ + NVLGSVGHP
Sbjct: 419 SAIGIRKAGVSGGGSLPAHVDKFFEAIGVVLLNGYGMTESSPVLAARQLSNNVLGSVGHP 478

Query: 302 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
           I HTE KIVDAET + LP GSKGIV+VRG QVM+GY+KNP ATKQA+DEDGWLNTGD+GW
Sbjct: 479 IRHTEFKIVDAETGKSLPYGSKGIVRVRGPQVMKGYYKNPLATKQAVDEDGWLNTGDLGW 538

Query: 362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ 421
           IAP+HSRG+S RCGG++VLEGRAKDTIVLSTGENVEPLELEEAA++SSLI+QIVVIGQDQ
Sbjct: 539 IAPYHSRGKSCRCGGIIVLEGRAKDTIVLSTGENVEPLELEEAAMKSSLIQQIVVIGQDQ 598

Query: 422 RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHV 481
           RR GAI+VP+KEEVL  AK+LSIV ADA+ELSK++  +LL  ELRKWTS+ SFQIGP+ V
Sbjct: 599 RRLGAIVVPNKEEVLEVAKKLSIVDADATELSKKQIANLLDKELRKWTSEASFQIGPVLV 658

Query: 482 VDEPFTVN 489
           +DE FT++
Sbjct: 659 IDESFTID 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512427|ref|XP_003524920.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Glycine max]

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/489 (70%), Positives = 415/489 (84%)

Query: 1   MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD 60
           MRFIILLWG+K+ +     + +PVF++ E+IDLGR+SR+A S+++DA + Y YE I +D 
Sbjct: 217 MRFIILLWGEKAELVGQENKHVPVFTFMEVIDLGRQSRRALSNAHDAGQRYIYEAINTDS 276

Query: 61  IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF 120
           IAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPAE GD+FLSMLPPWH YERAC YF
Sbjct: 277 IATLVYTSGTTGNPKGVMLTHRNLLHQIKNLWDIVPAEAGDRFLSMLPPWHAYERACEYF 336

Query: 121 IFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARAL 180
           IF+ GIE +YT VRNLKDDLQRYQP Y+ISVPLV+ETLYSGI KQI T S  R++VA   
Sbjct: 337 IFTCGIEQVYTTVRNLKDDLQRYQPQYLISVPLVFETLYSGIMKQISTGSVVRKLVALTF 396

Query: 181 IRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKI 240
           IR S AY  +KRIYEG CLT+N+KQ SY  +++DWLWAR I  IL PLH+LA+KLVY KI
Sbjct: 397 IRSSIAYMEYKRIYEGKCLTKNKKQASYAYSMLDWLWARTIATILLPLHILAKKLVYSKI 456

Query: 241 QSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGH 300
            SAIGISKAG+SGGGSLP  +D F+EAIGVKVQ GYGLTE+SPVIAARRP CNV+GSVGH
Sbjct: 457 HSAIGISKAGISGGGSLPWEVDKFFEAIGVKVQNGYGLTETSPVIAARRPRCNVIGSVGH 516

Query: 301 PINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG 360
           PI HTE KIVD+ET+EVLP GSKGI+KVRG QVM+GYFKN  AT QALD DGWLNTGDIG
Sbjct: 517 PIRHTEFKIVDSETDEVLPPGSKGILKVRGPQVMEGYFKNSLATNQALDGDGWLNTGDIG 576

Query: 361 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD 420
           WI PHHS GRSR   GV+V+EGRAKDTIVLSTGENVEPLELEEAA+RSS+I+QIVV+GQD
Sbjct: 577 WIVPHHSTGRSRNSSGVIVVEGRAKDTIVLSTGENVEPLELEEAAMRSSIIQQIVVVGQD 636

Query: 421 QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 480
           +RR GA+IVP+KEEVL  A++LSI+ +++S++S+EK  SL+Y EL+ WTS+  FQIGPI 
Sbjct: 637 KRRLGAVIVPNKEEVLKVARKLSIIDSNSSDVSEEKVTSLIYKELKTWTSESPFQIGPIL 696

Query: 481 VVDEPFTVN 489
           +V+EPFT++
Sbjct: 697 LVNEPFTID 705

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527657|ref|XP_004170826.1| PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like, partial [Cucumis sativus]

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/489 (68%), Positives = 411/489 (84%)

Query: 1   MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD 60
           MR +ILLWG+KSS+A + V+ I VF Y++I+D+GRESRK    S+DA++ Y YE I SDD
Sbjct: 156 MRCVILLWGEKSSLANEGVDGITVFDYNDIMDMGRESRKVMLGSHDAKQCYTYEPINSDD 215

Query: 61  IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF 120
           IAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPA+ GDKFLSMLPPWH YERAC YF
Sbjct: 216 IATLVYTSGTTGNPKGVMLTHRNLLHQIKNLWDIVPAKVGDKFLSMLPPWHAYERACEYF 275

Query: 121 IFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARAL 180
           IF+ G+E  YT +RNLKDDL+ YQP Y+ISVPLVYETLYSGIQKQI  SS  R+++  A 
Sbjct: 276 IFTFGVEQAYTTIRNLKDDLRHYQPDYLISVPLVYETLYSGIQKQILASSNLRKLIVLAF 335

Query: 181 IRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKI 240
           I +S AY   KRIYEG  LTR+  QP++LV+ +DWL+AR+  +ILWP+H+LA+ +VY K+
Sbjct: 336 INVSLAYMELKRIYEGTYLTRSNVQPTHLVSALDWLFARMTASILWPIHMLAKIIVYSKV 395

Query: 241 QSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGH 300
           QSAIGI KAG+SGGGSLP H+DLF+EAIG+ VQ GYGLTE SPV+AARRPTCNVLGSVGH
Sbjct: 396 QSAIGIWKAGISGGGSLPSHVDLFFEAIGITVQNGYGLTECSPVVAARRPTCNVLGSVGH 455

Query: 301 PINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG 360
           PI HTE +IVD ET + LP GS+GIV+VRG QVM+GY+KN SAT+Q LD++GW ++GDIG
Sbjct: 456 PIRHTEFRIVDMETGDALPPGSRGIVEVRGPQVMKGYYKNSSATQQVLDKEGWFSSGDIG 515

Query: 361 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD 420
           WIAPHHSRGRSRRCGGV+VL+GRAKDTIVL TGENVEP  +EEAA+RS+LI+QIVVIGQD
Sbjct: 516 WIAPHHSRGRSRRCGGVIVLDGRAKDTIVLLTGENVEPTVIEEAAMRSTLIQQIVVIGQD 575

Query: 421 QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 480
           QRR GAI+ P+KEEVL AAK+LS   +  S++S E   +L+Y E+RKWTS+C FQIGPI 
Sbjct: 576 QRRLGAIVFPNKEEVLSAAKKLSAEDSSTSDVSNETLTNLIYSEVRKWTSECPFQIGPIL 635

Query: 481 VVDEPFTVN 489
           +V+EPFT++
Sbjct: 636 IVNEPFTID 644

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441378|ref|XP_004138459.1| PREDICTED: probable acyl-activating enzyme 16, chloroplastic-like [Cucumis sativus]

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/489 (68%), Positives = 411/489 (84%)

Query: 1   MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD 60
           MR +ILLWG+KSS+A + V+ I VF Y++I+D+GRESRK    S+DA++ Y YE I SDD
Sbjct: 215 MRCVILLWGEKSSLANEGVDGITVFDYNDIMDMGRESRKVMLGSHDAKQCYTYEPINSDD 274

Query: 61  IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF 120
           IAT VYTSGTTGNPKGVMLTH+NLLHQI++L+DIVPA+ GDKFLSMLPPWH YERAC YF
Sbjct: 275 IATLVYTSGTTGNPKGVMLTHRNLLHQIKNLWDIVPAKVGDKFLSMLPPWHAYERACEYF 334

Query: 121 IFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARAL 180
           IF+ G+E  YT +RNLKDDL+ YQP Y+ISVPLVYETLYSGIQKQI  SS  R+++  A 
Sbjct: 335 IFTFGVEQAYTTIRNLKDDLRHYQPDYLISVPLVYETLYSGIQKQILASSNLRKLIVLAF 394

Query: 181 IRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKI 240
           I +S AY   KRIYEG  LTR+  QP++LV+ +DWL+AR+  +ILWP+H+LA+ +VY K+
Sbjct: 395 INVSLAYMELKRIYEGTYLTRSNVQPTHLVSALDWLFARMTASILWPIHMLAKIIVYSKV 454

Query: 241 QSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGH 300
           QSAIGI KAG+SGGGSLP H+DLF+EAIG+ VQ GYGLTE SPV+AARRPTCNVLGSVGH
Sbjct: 455 QSAIGIWKAGISGGGSLPSHVDLFFEAIGITVQNGYGLTECSPVVAARRPTCNVLGSVGH 514

Query: 301 PINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG 360
           PI HTE +IVD ET + LP GS+GIV+VRG QVM+GY+KN SAT+Q LD++GW ++GDIG
Sbjct: 515 PIRHTEFRIVDMETGDALPPGSRGIVEVRGPQVMKGYYKNSSATQQVLDKEGWFSSGDIG 574

Query: 361 WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD 420
           WIAPHHSRGRSRRCGGV+VL+GRAKDTIVL TGENVEP  +EEAA+RS+LI+QIVVIGQD
Sbjct: 575 WIAPHHSRGRSRRCGGVIVLDGRAKDTIVLLTGENVEPTVIEEAAMRSTLIQQIVVIGQD 634

Query: 421 QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 480
           QRR GAI+ P+KEEVL AAK+LS   +  S++S E   +L+Y E+RKWTS+C FQIGPI 
Sbjct: 635 QRRLGAIVFPNKEEVLSAAKKLSAEDSSTSDVSNETLTNLIYSEVRKWTSECPFQIGPIL 694

Query: 481 VVDEPFTVN 489
           +V+EPFT++
Sbjct: 695 IVNEPFTID 703

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331297|ref|NP_189021.2| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] gi|75311239|sp|Q9LK39.1|AAE16_ARATH RecName: Full=Probable acyl-activating enzyme 16, chloroplastic; Flags: Precursor gi|9293952|dbj|BAB01855.1| long-chain-fatty-acid CoA ligase [Arabidopsis thaliana] gi|332643293|gb|AEE76814.1| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/489 (69%), Positives = 408/489 (83%), Gaps = 3/489 (0%)

Query: 2   RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI 61
           +F+ILLWG+KSS+        PV+SY+EI   G+E R  F+ SND+ K Y+YE I  DDI
Sbjct: 208 KFVILLWGEKSSLV-TAGRHTPVYSYNEIKKFGQERRAKFARSNDSGK-YEYEYIDPDDI 265

Query: 62  ATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI 121
           AT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSMLP WH YERAC YFI
Sbjct: 266 ATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFI 325

Query: 122 FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI 181
           F+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYETLYSGIQKQI  SS AR+ +A  LI
Sbjct: 326 FTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYETLYSGIQKQISASSPARKFLALTLI 385

Query: 182 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 241
           ++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+
Sbjct: 386 KVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIR 445

Query: 242 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP 301
           S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHP
Sbjct: 446 SSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHP 505

Query: 302 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
           I  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GW
Sbjct: 506 IKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGW 565

Query: 362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ 421
           I P HS GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS+LI+QIVVIGQDQ
Sbjct: 566 ITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQ 625

Query: 422 RRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 480
           RR GAI++P+KE    AAK ++S V ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ 
Sbjct: 626 RRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKETITSMVYEELRKWTSQCSFQVGPVL 685

Query: 481 VVDEPFTVN 489
           +VDEPFT++
Sbjct: 686 IVDEPFTID 694

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20799733|gb|AAM28629.1|AF503771_1 acyl-CoA synthetase-like protein [Arabidopsis thaliana]

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/489 (69%), Positives = 408/489 (83%), Gaps = 3/489 (0%)

Query: 2   RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI 61
           +F+ILLWG+KSS+        PV+SY+EI   G+E R  F+ SND+ K Y+YE I  DDI
Sbjct: 208 KFVILLWGEKSSLV-TAGRHTPVYSYNEIKKFGQERRAKFARSNDSGK-YEYEYIDPDDI 265

Query: 62  ATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI 121
           AT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSMLP WH YERAC YFI
Sbjct: 266 ATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFI 325

Query: 122 FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI 181
           F+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYETLYSGIQKQI  SS AR+ +A  LI
Sbjct: 326 FTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYETLYSGIQKQISASSPARKFLALTLI 385

Query: 182 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 241
           ++S AYT  KR+YEG CLT+NQK P Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+
Sbjct: 386 KVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIR 445

Query: 242 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP 301
           S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHP
Sbjct: 446 SSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHP 505

Query: 302 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
           I  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GW
Sbjct: 506 IKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGW 565

Query: 362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ 421
           I P HS GRSR CGGV+VLEGRAKDTIVLSTGENVEPLE+EEAA+RS+LI+QIVVIGQDQ
Sbjct: 566 ITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQ 625

Query: 422 RRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 480
           RR GAI++P+KE    AAK ++S V ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ 
Sbjct: 626 RRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKETITSMVYEELRKWTSQCSFQVGPVL 685

Query: 481 VVDEPFTVN 489
           +VDEPFT++
Sbjct: 686 IVDEPFTID 694

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462831|ref|XP_003601697.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid CoA ligase [Medicago truncatula] gi|355490745|gb|AES71948.1| Annotation was added to scaffolds in November 2011~Long-chain-fatty-acid CoA ligase [Medicago truncatula]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/490 (68%), Positives = 409/490 (83%), Gaps = 1/490 (0%)

Query: 1   MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD 60
           +RFIILLWG+KSS+  +  + +P++++ E+I+ GR+SR+A   S+DAR+HY +ETI  DD
Sbjct: 203 IRFIILLWGEKSSLVNEADKGVPIYTFMEVINFGRQSRRALHTSDDAREHYIFETIKLDD 262

Query: 61  IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA-ENGDKFLSMLPPWHVYERACGY 119
           IAT VYTSGTTGNPKGVMLTH+NLLHQI+ L D+VP  E GDKFLSMLPPWH YERAC Y
Sbjct: 263 IATLVYTSGTTGNPKGVMLTHQNLLHQIKHLSDVVPTTEAGDKFLSMLPPWHAYERACEY 322

Query: 120 FIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARA 179
            +FSRG+E +YT VRNLKDDL RY+PH M+SVPLV+ETLYSGI KQI TSS  R++VA  
Sbjct: 323 LVFSRGLEHIYTTVRNLKDDLGRYKPHLMVSVPLVFETLYSGIMKQISTSSLVRKLVALT 382

Query: 180 LIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKK 239
            IR+S  Y   KRIYEG CLT+NQK PSYL A++DWLWARI+  IL+P+H+LA KLVY K
Sbjct: 383 FIRVSLGYMECKRIYEGKCLTKNQKAPSYLYAMLDWLWARIMATILYPVHMLANKLVYSK 442

Query: 240 IQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVG 299
           I+S IGIS A +SGGGSLP H+D F+EAIG+ +Q GYGLTE+SPVIAARR  C+V+GSVG
Sbjct: 443 IRSTIGISTAAISGGGSLPSHVDKFFEAIGLNLQNGYGLTETSPVIAARRLGCDVIGSVG 502

Query: 300 HPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI 359
           +P+ HTE K+VD+ET EVLP GSKGI+KVRG Q+M+GY+KNP AT + +D DGWLNTGDI
Sbjct: 503 YPLKHTEFKVVDSETGEVLPPGSKGILKVRGPQLMKGYYKNPLATNRVIDSDGWLNTGDI 562

Query: 360 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 419
           GWIA HHS GRSR  GGV+V+EGRAKDTIVLS+GENVEP ELEEAA RS+LI+QIVVIGQ
Sbjct: 563 GWIAAHHSTGRSRNSGGVIVVEGRAKDTIVLSSGENVEPGELEEAATRSNLIQQIVVIGQ 622

Query: 420 DQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPI 479
           D+RR GAIIVP+KEEVL AAK LSI+ +++S++S+EK  SL+Y ELR WTS   FQIGPI
Sbjct: 623 DKRRLGAIIVPNKEEVLKAAKELSIIDSNSSDVSQEKVTSLIYNELRTWTSGFPFQIGPI 682

Query: 480 HVVDEPFTVN 489
            +V++PFT++
Sbjct: 683 LLVNDPFTID 692

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
TAIR|locus:2095173	722	AAE16 "acyl activating enzyme	0.981	0.673	0.654	2.1e-173
TAIR|locus:2129371	727	AAE15 "acyl-activating enzyme	0.963	0.656	0.640	1.6e-166
UNIPROTKB|F1RSZ3	699	ACSL1 "Uncharacterized protein	0.434	0.307	0.339	4.3e-33
FB|FBgn0036821	704	CG3961 [Drosophila melanogaste	0.494	0.348	0.303	6.7e-33
UNIPROTKB|B7Z452	698	ACSL1 "Long-chain-fatty-acid--	0.436	0.309	0.323	1.8e-32
UNIPROTKB|Q0VCZ8	699	ACSL1 "Acyl-CoA synthetase lon	0.434	0.307	0.347	2.5e-32
UNIPROTKB|Q9KP89	601	VC_2484 "Long-chain-fatty-acid	0.460	0.379	0.303	3.3e-32
TIGR_CMR|VC_2484	601	VC_2484 "long-chain-fatty-acid	0.460	0.379	0.303	3.3e-32
UNIPROTKB|B7Z3Z9	527	ACSL1 "Long-chain-fatty-acid--	0.436	0.409	0.323	3.4e-32
ZFIN|ZDB-GENE-040801-88	729	zgc:101071 "zgc:101071" [Danio	0.492	0.334	0.320	8.5e-32

TAIR|locus:2095173 AAE16 "acyl activating enzyme 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 1685 (598.2 bits), Expect = 2.1e-173, P = 2.1e-173
 Identities = 320/489 (65%), Positives = 383/489 (78%)

Query:     2 RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI 61
             +F+ILLWG+KSS+        PV+SY+EI   G+E R  F+ SND+ K Y+YE I  DDI
Sbjct:   208 KFVILLWGEKSSLVT-AGRHTPVYSYNEIKKFGQERRAKFARSNDSGK-YEYEYIDPDDI 265

Query:    62 ATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI 121
             AT +YTSGTTGNPKGVMLTH+NLLHQIR+L D VPAE G++FLSMLP WH YERAC YFI
Sbjct:   266 ATIMYTSGTTGNPKGVMLTHQNLLHQIRNLSDFVPAEAGERFLSMLPSWHAYERACEYFI 325

Query:   122 FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSXXXXXXXXXXX 181
             F+ G+E  YT++R LKDDL+RYQPHY+ISVPLVYETLYSGIQKQI  SS           
Sbjct:   326 FTCGVEQKYTSIRFLKDDLKRYQPHYLISVPLVYETLYSGIQKQISASSPARKFLALTLI 385

Query:   182 XXSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 241
               S AYT  KR+YEG CLT+NQK P Y+V+L+DWLWAR++   LWPLH+LAEKLV++KI+
Sbjct:   386 KVSLAYTEMKRVYEGLCLTKNQKPPMYIVSLVDWLWARVVAFFLWPLHMLAEKLVHRKIR 445

Query:   242 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP 301
             S+IGI+KAGVSGGGSLPMH+D F+EAIGV VQ GYGLTE+SPV++ARR  CNVLGSVGHP
Sbjct:   446 SSIGITKAGVSGGGSLPMHVDKFFEAIGVNVQNGYGLTETSPVVSARRLRCNVLGSVGHP 505

Query:   302 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
             I  TE KIVD ET  VLP GSKGIVKVRG  VM+GY+KNP ATKQ +D+DGW NTGD+GW
Sbjct:   506 IKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYYKNPLATKQVIDDDGWFNTGDMGW 565

Query:   362 IAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQ 421
             I P H          V+VLEGRAKDTIVLSTGENVEP        RS+LI+QIVVIGQDQ
Sbjct:   566 ITPQHSTGRSRSCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSNLIQQIVVIGQDQ 625

Query:   422 RRPGAIIVPDKEEVLMAAK-RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 480
             RR GAI++P+KE    AAK ++S V ++ +ELSKE   S++Y ELRKWTS+CSFQ+GP+ 
Sbjct:   626 RRLGAIVIPNKEAAEGAAKQKISPVDSEVNELSKETITSMVYEELRKWTSQCSFQVGPVL 685

Query:   481 VVDEPFTVN 489
             +VDEPFT++
Sbjct:   686 IVDEPFTID 694

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2129371 AAE15 "acyl-activating enzyme 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1620 (575.3 bits), Expect = 1.6e-166, P = 1.6e-166
 Identities = 313/489 (64%), Positives = 374/489 (76%)

Query:     1 MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDD 60
             +RF+ILLWG+KSS+    ++ IPV+SY EII+ G+ESR   S SND R  Y+ + I SDD
Sbjct:   223 LRFLILLWGEKSSLVTQGMQ-IPVYSYAEIINQGQESRAKLSASNDTRS-YRNQFIDSDD 280

Query:    61 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF 120
              A  +YTSGTTGNPKGVMLTH+NLLHQI+ L   VPA+ GDKFLSMLP WH YERA  YF
Sbjct:   281 TAAIMYTSGTTGNPKGVMLTHRNLLHQIKHLSKYVPAQAGDKFLSMLPSWHAYERASEYF 340

Query:   121 IFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSXXXXXXXXXX 180
             IF+ G+E MYT++R LKDDL+RYQP+Y++SVPLVYETLYSGIQKQI  SS          
Sbjct:   341 IFTCGVEQMYTSIRYLKDDLKRYQPNYIVSVPLVYETLYSGIQKQISASSAGRKFLALTL 400

Query:   181 XXXSFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKI 240
                S AY   KRIYEG CLT+ QK P Y+VA +DWLWAR+I A+LWPLH+LA+KL+YKKI
Sbjct:   401 IKVSMAYMEMKRIYEGMCLTKEQKPPMYIVAFVDWLWARVIAALLWPLHMLAKKLIYKKI 460

Query:   241 QSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGH 300
              S+IGISKAG+SGGGSLP+H+D F+EAIGV +Q GYGLTE+SPV+ AR  +CNVLGS GH
Sbjct:   461 HSSIGISKAGISGGGSLPIHVDKFFEAIGVILQNGYGLTETSPVVCARTLSCNVLGSAGH 520

Query:   301 PINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG 360
             P++ TE KIVD ETN VLP GSKGI+KVRG QVM+GY+KNPS TKQ L+E GW NTGD G
Sbjct:   521 PMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGYYKNPSTTKQVLNESGWFNTGDTG 580

Query:   361 WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQD 420
             WIAPHH          V+VLEGRAKDTIVLSTGENVEP        RS +I QIVVIGQD
Sbjct:   581 WIAPHHSKGRSRHCGGVIVLEGRAKDTIVLSTGENVEPLEIEEAAMRSRVIEQIVVIGQD 640

Query:   421 QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIH 480
             +RR GAII+P+KEE    A+R+        E SKE   SL+Y ELRKWTS+CSFQ+GP+ 
Sbjct:   641 RRRLGAIIIPNKEE----AQRVD------PETSKETLKSLVYQELRKWTSECSFQVGPVL 690

Query:   481 VVDEPFTVN 489
             +VD+PFT++
Sbjct:   691 IVDDPFTID 699

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0008922 "long-chain fatty acid [acyl-carrier-protein

GO:0009536 "plastid" evidence=IDA

GO:0030497 "fatty acid elongation" evidence=IDA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

UNIPROTKB|F1RSZ3 ACSL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 4.3e-33, Sum P(2) = 4.3e-33
 Identities = 79/233 (33%), Positives = 116/233 (49%)

Query:   231 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 287
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +   + 
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCSL 470

Query:   288 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 347
               P     G VG P+  + IK+VD E    L A  +G V V+G  V QGY K+P+ T +A
Sbjct:   471 TVPGDWTAGHVGAPMPCSLIKLVDVEEMNYLAAKGEGEVCVKGPNVFQGYLKDPAKTAEA 530

Query:   348 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 406
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYL 579

Query:   407 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 458
             RS  + Q+ V G+  Q    AI+VPD E +   A++   V     EL + K +
Sbjct:   580 RSEPVAQVFVHGESLQAFLIAIVVPDVETLGHWAQKRGFV-GSFEELCRNKDV 631

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

FB|FBgn0036821 CG3961 [Drosophila melanogaster (taxid:7227)]

 Score = 257 (95.5 bits), Expect = 6.7e-33, Sum P(2) = 6.7e-33
 Identities = 80/264 (30%), Positives = 123/264 (46%)

Query:   233 EKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRP 290
             +KLV+KK+  A G + +  V G   L  ++  F   A+G  V  GYG TE +  I     
Sbjct:   420 DKLVFKKVHQAFGGNLRLMVVGSAPLAGNVLTFMRCALGCLVLEGYGQTECTGAITLTVQ 479

Query:   291 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 350
               +V   VG P++   +K+VD    E     + G V VRGS V  GY+K+P  T +A+D 
Sbjct:   480 GDHVPNHVGPPVSCNAVKLVDVPEMEYFANQNTGEVCVRGSNVFHGYYKDPEKTAEAIDS 539

Query:   351 DGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSL 410
             +GW +TGD+G   P+            L +  R K    LS GE + P         S  
Sbjct:   540 EGWHHTGDVGMWLPN----------GTLRIIDRRKHIFKLSQGEYIVPEKIENIYTLSQY 589

Query:   411 IRQIVVIGQDQRRPG-AIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS-LLYGELRKW 468
             + Q+ V G+  +    A++VPD + VL      + V    S L   K +  L+  ++  W
Sbjct:   590 VNQVYVYGESLKSCIIAVVVPDTD-VLKQWATENNVRGTLSVLCNNKNVKELIMNDMLNW 648

Query:   469 TSKC---SF-QIGPIHVVDEPFTV 488
               +    SF Q+  I++  +PF+V
Sbjct:   649 GKQSGLKSFEQVKDIYLHPDPFSV 672

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

UNIPROTKB|B7Z452 ACSL1 "Long-chain-fatty-acid--CoA ligase 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
 Identities = 75/232 (32%), Positives = 113/232 (48%)

Query:   231 LAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAAR 288
             L ++L++ K+QS++G   +  V+G   +   +  F  A +G +   GYG TE +      
Sbjct:   411 LWDRLIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLT 470

Query:   289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 348
              P     G VG P+    IK+VD E    + A  +G V V+G  V QGY K+P+ T +AL
Sbjct:   471 MPGDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPNVFQGYLKDPAKTAEAL 530

Query:   349 DEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXR 407
             D+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        R
Sbjct:   531 DKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYMR 579

Query:   408 SSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 458
             S  + Q+ V G+  Q    AI+VPD E +   A++         EL + K +
Sbjct:   580 SEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGF-EGSFEELCRNKDV 630

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|Q0VCZ8 ACSL1 "Acyl-CoA synthetase long-chain family member 1" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 2.5e-32, Sum P(2) = 2.5e-32
 Identities = 81/233 (34%), Positives = 115/233 (49%)

Query:   231 LAEKLVYKKIQSAIGISKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAA 287
             L +KL++ KIQS++G  K  +   G+ P+    +     A+G +   GYG TE +     
Sbjct:   412 LWDKLIFHKIQSSLG-GKVRLMITGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCL 470

Query:   288 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 347
                     G VG P+  + IK+VD E    L A  +G V V+GS V QGY K+P  T +A
Sbjct:   471 TVAGDWTAGHVGPPMPCSIIKLVDVEEMNYLAAKGEGEVCVKGSNVFQGYLKDPVKTAEA 530

Query:   348 LDEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 406
             LD+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        
Sbjct:   531 LDKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYQ 579

Query:   407 RSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 458
             RS  I Q+ V G+  Q    AI+VPD E +   A++  IV     EL + K +
Sbjct:   580 RSEPIAQVFVHGESLQAFLIAIVVPDVETLGTWAQKRGIV-GSFEELCRNKDV 631

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0044539 "long-chain fatty acid import" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q9KP89 VC_2484 "Long-chain-fatty-acid--CoA ligase, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 247 (92.0 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
 Identities = 79/260 (30%), Positives = 123/260 (47%)

Query:   229 HLLAEKLVYKKIQSAIGISKAGVS--GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 286
             H  A+KLV  K+++ +G  +      GG  L   I  F+ AIG+ V++GYG+TE++  ++
Sbjct:   325 HQFADKLVLSKLRALLG-GRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVS 383

Query:   287 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 346
                  C    S+G  +   ++KI   E NE+L         VRG  VM+GY+K    T +
Sbjct:   384 CWDDHCFNPDSIGLSMPGAQVKI--GENNEIL---------VRGPMVMRGYYKLDKETTE 432

Query:   347 ALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 406
             + DE G+L TGD G I  +            L +  R K+ +  S G+ + P        
Sbjct:   433 SFDEQGFLKTGDAGHIDENGN----------LFITDRIKELMKTSGGKYIAPQVIEGAIG 482

Query:   407 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK--------EKTI 458
             +   I QI VI   ++   A+IVP  + +   AK L+I + D  EL K        EK +
Sbjct:   483 KDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRV 542

Query:   459 SLLYGELRKWTSKCSFQIGP 478
             + L  EL K+     F++ P
Sbjct:   543 NELQKELAKFEQVKKFRLLP 562

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

TIGR_CMR|VC_2484 VC_2484 "long-chain-fatty-acid--CoA ligase, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 247 (92.0 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
 Identities = 79/260 (30%), Positives = 123/260 (47%)

Query:   229 HLLAEKLVYKKIQSAIGISKAGVS--GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA 286
             H  A+KLV  K+++ +G  +      GG  L   I  F+ AIG+ V++GYG+TE++  ++
Sbjct:   325 HQFADKLVLSKLRALLG-GRINFMPCGGAKLDETIGRFFHAIGINVKLGYGMTETTATVS 383

Query:   287 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ 346
                  C    S+G  +   ++KI   E NE+L         VRG  VM+GY+K    T +
Sbjct:   384 CWDDHCFNPDSIGLSMPGAQVKI--GENNEIL---------VRGPMVMRGYYKLDKETTE 432

Query:   347 ALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXX 406
             + DE G+L TGD G I  +            L +  R K+ +  S G+ + P        
Sbjct:   433 SFDEQGFLKTGDAGHIDENGN----------LFITDRIKELMKTSGGKYIAPQVIEGAIG 482

Query:   407 RSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK--------EKTI 458
             +   I QI VI   ++   A+IVP  + +   AK L+I + D  EL K        EK +
Sbjct:   483 KDHFIEQIAVIADTRKFVSALIVPCFDSLEEYAKELNIKYHDRLELIKHSQVLEMFEKRV 542

Query:   459 SLLYGELRKWTSKCSFQIGP 478
             + L  EL K+     F++ P
Sbjct:   543 NELQKELAKFEQVKKFRLLP 562

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

UNIPROTKB|B7Z3Z9 ACSL1 "Long-chain-fatty-acid--CoA ligase 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
 Identities = 75/232 (32%), Positives = 113/232 (48%)

Query:   231 LAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAAR 288
             L ++L++ K+QS++G   +  V+G   +   +  F  A +G +   GYG TE +      
Sbjct:   240 LWDRLIFHKVQSSLGGRVRLMVTGAAPVSATVLTFLRAALGCQFYEGYGQTECTAGCCLT 299

Query:   289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 348
              P     G VG P+    IK+VD E    + A  +G V V+G  V QGY K+P+ T +AL
Sbjct:   300 MPGDWTAGHVGAPMPCNLIKLVDVEEMNYMAAEGEGEVCVKGPNVFQGYLKDPAKTAEAL 359

Query:   349 DEDGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXR 407
             D+DGWL+TGDIG W+ P+            L +  R K    L+ GE + P        R
Sbjct:   360 DKDGWLHTGDIGKWL-PN----------GTLKIIDRKKHIFKLAQGEYIAPEKIENIYMR 408

Query:   408 SSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI 458
             S  + Q+ V G+  Q    AI+VPD E +   A++         EL + K +
Sbjct:   409 SEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGF-EGSFEELCRNKDV 459

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0014070 "response to organic cyclic compound" evidence=IEA

GO:0015908 "fatty acid transport" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0034201 "response to oleic acid" evidence=IEA

GO:0042178 "xenobiotic catabolic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IEA

ZFIN|ZDB-GENE-040801-88 zgc:101071 "zgc:101071" [Danio rerio (taxid:7955)]

 Score = 257 (95.5 bits), Expect = 8.5e-32, Sum P(2) = 8.5e-32
 Identities = 85/265 (32%), Positives = 127/265 (47%)

Query:   233 EKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAARRP 290
             +K+++KK+Q+++G   +  V+G   +   +  F  A +G +   GYG TE +       P
Sbjct:   412 DKIIFKKVQASVGGCVRMMVTGAAPISEPVLTFLRAALGCQFYEGYGQTECTAGSTTTLP 471

Query:   291 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE 350
                  G VG P+   +IK+VD        A  +G V VRG    +GY K+P  TK+ALDE
Sbjct:   472 GDWTAGHVGAPLPCNDIKLVDVAEMNYYAANGEGEVCVRGPNAFKGYLKDPEKTKEALDE 531

Query:   351 DGWLNTGDIG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSS 409
             +GW++TGDIG W+ P+            L +  R K    L+ GE + P        RS 
Sbjct:   532 EGWVHTGDIGRWL-PNGS----------LKIVDRKKHIFKLAQGEYIAPEKIENIYIRSE 580

Query:   410 LIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTI--SLLYG--E 464
              + Q  V G   Q    AIIVPD + +   AK+  I      +L K K I  ++L    +
Sbjct:   581 AVVQAFVHGDSLQACLVAIIVPDPDFLPGWAKKRGI-EGTYEDLCKNKDIKKAILEDIIK 639

Query:   465 LRKWTSKCSF-QIGPIHVVDEPFTV 488
             L K +   SF Q+  I +  E FT+
Sbjct:   640 LGKESGLKSFEQVKDIALHSEMFTI 664

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LK39	AAE16_ARATH	6, ., 2, ., 1, ., -	0.6932	0.9818	0.6731	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_880012	hypothetical protein (706 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0096010101	acyl-CoA oxidase (EC-1.3.3.6) (639 aa)						•			0.899
	fgenesh4_pg.C_scaffold_3547000001	annotation not avaliable (326 aa)						•			0.899
	fgenesh4_pg.C_LG_XIX000851	acyl-CoA oxidase (EC-1.3.3.6) (680 aa)						•			0.899
	eugene3.00100112	annotation not avaliable (252 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VII0199	acyl-CoA oxidase (EC-1.3.3.6) (689 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_V0077	acyl-CoA oxidase (EC-1.3.3.6) (691 aa)						•			0.899
	estExt_fgenesh4_pm.C_290034	acyl-CoA oxidase (EC-1.3.3.6) (664 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_VI1706	acyl-CoA oxidase (EC-1.3.3.6) (436 aa)						•			0.899
	gw1.XVI.1394.1	hypothetical protein (823 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	495
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-123
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-121
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	5e-77
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	4e-52
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	9e-51
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	2e-40
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	5e-40
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-39
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-36
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	2e-35
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	4e-35
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	5e-34
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	8e-34
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-33
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	8e-33
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	1e-32
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-31
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-31
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	3e-31
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	5e-31
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	9e-31
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	3e-30
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	6e-30
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	4e-29
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	5e-29
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-28
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-28
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	8e-28
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-27
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	5e-27
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	8e-27
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-26
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	7e-26
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	1e-25
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	9e-25
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	8e-24
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-23
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	8e-23
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-22
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-22
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-22
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	4e-22
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	5e-22
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	8e-22
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	9e-22
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-21
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	5e-21
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	1e-20
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-20
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	2e-20
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-20
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	4e-20
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-20
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	6e-20
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	8e-20
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-19
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-19
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-18
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	5e-18
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-17
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	8e-17
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	9e-17
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-16
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	2e-16
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-16
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	2e-16
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	2e-16
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-16
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	7e-16
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	8e-16
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-15
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-15
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-15
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-15
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	3e-15
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-15
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	4e-15
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	6e-15
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-14
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-14
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-14
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-14
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	2e-14
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-14
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	3e-14
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	4e-14
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	5e-14
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	6e-14
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-13
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-13
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	3e-13
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-13
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	7e-13
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-12
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-12
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-12
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-12
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	3e-12
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	3e-12
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	4e-12
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	6e-12
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	8e-12
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-11
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	2e-11
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-11
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-11
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-11
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-11
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-11
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	5e-11
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	7e-11
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	8e-11
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	8e-11
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-10
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	3e-10
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-10
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	5e-10
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	7e-10
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	8e-10
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	9e-10
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	9e-10
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	9e-10
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-09
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	1e-09
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-09
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-09
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	3e-09
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	4e-09
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-09
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	5e-09
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	9e-09
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	9e-09
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	9e-09
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-08
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-08
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-08
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-08
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	3e-08
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	3e-08
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-08
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	3e-08
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	3e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	4e-08
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-08
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	5e-08
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	6e-08
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	7e-08
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-07
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-07
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-07
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-07
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-07
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-07
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-07
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-07
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-07
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	3e-07
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	3e-07
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	5e-07
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	5e-07
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	6e-07
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-07
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	6e-07
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	6e-07
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	7e-07
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	7e-07
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	7e-07
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-06
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-06
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-06
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	2e-06
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-06
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-06
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	2e-06
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-06
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	3e-06
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	3e-06
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	5e-06
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	5e-06
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	5e-06
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	5e-06
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	6e-06
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	6e-06
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	7e-06
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-05
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-05
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-05
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	2e-05
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-05
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	2e-05
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	2e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-05
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-05
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-05
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	3e-05
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-05
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	3e-05
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	3e-05
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	4e-05
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-05
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	5e-05
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-05
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	7e-05
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	8e-05
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-04
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-04
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	1e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	1e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-04
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-04
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-04
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-04
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	2e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-04
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	3e-04
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-04
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	3e-04
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	3e-04
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	3e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	4e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	6e-04
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	8e-04
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	0.001
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	0.001
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.001
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	0.001
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	0.001
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	0.002
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	0.002
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	0.002
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	0.002
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	0.002
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	0.003
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.003
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	0.003
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.003
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	0.003
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.004
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.004
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	0.004

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  373 bits (961), Expect = e-123
 Identities = 152/469 (32%), Positives = 233/469 (49%), Gaps = 61/469 (13%)

Query: 27  YDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH 86
            +   D G       S   + R          DD+AT +YTSGTTG PKGVMLTH+NLL 
Sbjct: 163 LEVFPDEGISLFLIDSAGLEGRIAPP----KPDDLATIIYTSGTTGTPKGVMLTHRNLLA 218

Query: 87  QIRSLYDIVPA-ENGDKFLSMLPPWHVYERACGYFIF--SRGIELMYTAVRNLKDDLQRY 143
           Q+  + +++P    GD+ LS LP  H++ERA    +        L     R L +DL+  
Sbjct: 219 QVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEV 278

Query: 144 QPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ 203
           +P  MI VP V+E +Y GI +++  + A RR + R  +++++   +              
Sbjct: 279 RPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKIS-------------- 324

Query: 204 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSLPMHID 262
                           ++        L+A++LV++KI+ A+G   +  +SGG  L   + 
Sbjct: 325 --------------RALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELL 370

Query: 263 LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS 322
            F+ ++G+ +  GYGLTE+S V++   P   VLG+VG P+   E+KI D           
Sbjct: 371 HFFRSLGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD----------- 419

Query: 323 KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEG 382
            G + VRG  VM+GY+KNP AT +A  EDGW  TGD+G +             G LV+ G
Sbjct: 420 DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDE----------DGYLVITG 469

Query: 383 RAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRL 442
           R K+ I LS G+N+ P  +E    +S LI QI V+G D++   A+IVPD + +   A+ L
Sbjct: 470 RKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIVPDFDALEKWAESL 529

Query: 443 SIV-HADASELSK-EKTISLLYGELRK-WTSKCSF-QIGPIHVVDEPFT 487
           + V  A   EL++  K + L+   + K       F QI    ++ + FT
Sbjct: 530 NKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFT 578

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  362 bits (931), Expect = e-121
 Identities = 141/439 (32%), Positives = 207/439 (47%), Gaps = 91/439 (20%)

Query: 57  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA 116
             DD+AT +YTSGTTGNPKGVMLTH+NLL Q  +L +++P   GD+ LS LP  HV+E+ 
Sbjct: 86  KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLAHVFEQR 145

Query: 117 CG-YFIFSRGIELMYTA-VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 174
            G Y   S G  + +      L +DL+  +P    +VP V+E +Y+GI+ +         
Sbjct: 146 LGEYLPLSSGARVNFAESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAK--------- 196

Query: 175 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 234
            VA A           KR                   L  W       A+          
Sbjct: 197 -VAAA--------GPLKR------------------KLFRW-------ALG--------- 213

Query: 235 LVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV 294
                     G  +  VSGG  LP  +  F+ A+G+ +  GYGLTE+S V    RP    
Sbjct: 214 ---------GGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATVNRPGDIR 264

Query: 295 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 354
           +G+VG P+   E++I +            G + VRG  VM+GY+KNP AT +ALDEDGWL
Sbjct: 265 IGTVGKPLPGVEVRIAE-----------DGEILVRGPNVMKGYYKNPEATAEALDEDGWL 313

Query: 355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 414
           +TGDIG +             G LV+  R KD IV + G+N+ P  +E A   S  I Q 
Sbjct: 314 HTGDIGRLD----------EDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQA 363

Query: 415 VVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGE-----LRKWT 469
           VV+G D+    A+IV D E +   A++  +     ++L+++  +  L  +       +  
Sbjct: 364 VVVGDDRPYLTALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVEEANARLA 423

Query: 470 SKCSFQIGPIHVVDEPFTV 488
                QI    ++ + F++
Sbjct: 424 R--VEQIKKFVLLPKEFSI 440

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  250 bits (641), Expect = 5e-77
 Identities = 147/489 (30%), Positives = 217/489 (44%), Gaps = 77/489 (15%)

Query: 18  IVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGV 77
             + + V+S++E+ +LG++++   +                +D+AT +YTSGTTGNPKGV
Sbjct: 82  FCDAVKVYSFEELEELGKKNKVPPTPPK------------PEDLATIMYTSGTTGNPKGV 129

Query: 78  MLTHKNLLHQIRSLYDIVPAENG--DKFLSMLPPWHVYERACGYFIFSRGIELMYTA--V 133
           MLTH N++  +  +  IVP   G  D ++S LP  H++ER         G  + Y +   
Sbjct: 130 MLTHGNIVAGVAGINKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDT 189

Query: 134 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI 193
           R LK D++  +P   + VP V + +Y GI  ++      +R +       +FAY  +K  
Sbjct: 190 RGLKGDIKELKPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTL------FNFAY-NYKL- 241

Query: 194 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAG--- 250
                L R     S                       L +KLV+KKI++A+G    G   
Sbjct: 242 ---AALRRGHGYAS----------------------PLWDKLVFKKIKAALG----GRVR 272

Query: 251 --VSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEI 307
             +SGG  L      F     G  V  GYGLTE+        P     G VG P+   EI
Sbjct: 273 LMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHVGPPLPCCEI 332

Query: 308 KIVDAETNEVLPAGS--KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 365
           K+VD             +G + +RG  V +GY+KNP  T +A DEDGW +TGDIG   P 
Sbjct: 333 KLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLP- 391

Query: 366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRRP 424
                     G L +  R K+   LS GE V   +LE     S L+ QI V G   +   
Sbjct: 392 ---------DGTLKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLKSFL 442

Query: 425 GAIIVPDKEEVLMAAKRLSIVHADASEL-SKEKTISLLYGELRKWTSKC---SF-QIGPI 479
            AI+VPD++ +   A        D  EL + +K    +  +L +   +     F  +  I
Sbjct: 443 VAIVVPDEDVLEKWAAENGGGGGDFEELCNNKKLKKAILKDLNEIGKENGLKGFEIVKAI 502

Query: 480 HVVDEPFTV 488
           H+  EPFT 
Sbjct: 503 HLTPEPFTP 511

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  183 bits (467), Expect = 4e-52
 Identities = 119/446 (26%), Positives = 183/446 (41%), Gaps = 104/446 (23%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA-- 116
           +D+AT VYTSGTTG PKGVML+        +   +I+     D+ LS LP  H+ ER   
Sbjct: 137 EDLATIVYTSGTTGQPKGVMLSFGAFAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIV 196

Query: 117 ------CGYFI-FSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTS 169
                  G  + F   ++   T       DLQR +P    SVP     L++  Q+ I   
Sbjct: 197 EGGSLYSGAEVFFVESLD---TFAA----DLQRARPTVFFSVP----RLWTKFQQGILAK 245

Query: 170 SAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLH 229
               +                        L    K P                       
Sbjct: 246 LPPEK------------------------LNLLLKIP----------------------- 258

Query: 230 LLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL--FYEAIGVKVQVGYGLTESSPVIAA 287
            +   LV KKI   +G+ +A ++G G+ PM   L  +Y  +G+ +  GYG+TE+      
Sbjct: 259 -ILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTL 317

Query: 288 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA 347
             P    +G+VG PI   E+KI  +E  E+L         +R   +M GY+K+P  T +A
Sbjct: 318 NYPGDRRIGTVGKPIPGVELKI--SEDGEIL---------IRSPGLMSGYYKDPEKTAEA 366

Query: 348 LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 407
             EDGWL+TGD G I             G L + GR K+    S G+ V P  +E     
Sbjct: 367 FTEDGWLHTGDKGEIDED----------GFLKITGRVKELFKTSKGKYVAPAPIENLLSA 416

Query: 408 SSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK 467
           +  + Q+ V+G    +P A++V  +    +  + +        E S ++T++ +  EL  
Sbjct: 417 NPHVEQVCVVGSGLPQPVALVVLSEAADPLEREEV--------EESLQQTLAKVNSELES 468

Query: 468 WTSKCSFQIGPIHVVDEPFTVNFLCL 493
                  ++  + VV E +TV    L
Sbjct: 469 HE-----RLSALVVVKEAWTVENGLL 489

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  182 bits (465), Expect = 9e-51
 Identities = 144/494 (29%), Positives = 213/494 (43%), Gaps = 101/494 (20%)

Query: 24  VFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKN 83
           + +Y +++  GR S + F                 +D+AT  YTSGTTG PKGV+LTH N
Sbjct: 198 IVTYSKLLAQGRSSPQPFRPPK------------PEDVATICYTSGTTGTPKGVVLTHGN 245

Query: 84  LLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLK--DDLQ 141
           L+  +            D  +S LP  H+YER     +   G+ + +    NLK  DDL 
Sbjct: 246 LIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLA 305

Query: 142 RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR 201
             +P    SVP +Y  +Y GI   +  S      +   L     AY A K+  E      
Sbjct: 306 ALRPTIFCSVPRLYNRIYDGITNAVKESG----GLKERLFNA--AYNAKKQALE------ 353

Query: 202 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI 261
           N K PS                 +W      ++LV+ KI++ +G  +      G+ P+  
Sbjct: 354 NGKNPS----------------PMW------DRLVFNKIKAKLG-GRVRFMSSGASPLSP 390

Query: 262 DL--FYE-AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAE----T 314
           D+  F     G +V  GYG+TE+S VI+      N+ G VG P    E+K+VD      T
Sbjct: 391 DVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYT 450

Query: 315 NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 374
           +E  P   +G + VRG  + +GY+K+   T++ +DEDGWL+TGDIG   P          
Sbjct: 451 SEDQPY-PRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP---------- 499

Query: 375 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG--AIIVPDK 432
           GG L +  R K+   L+ GE + P ++E    +   + Q  V G D       A++V D 
Sbjct: 500 GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYG-DSLNSSLVAVVVVD- 557

Query: 433 EEVLM--AAKR----------------LSIVHADASELSKEKTISLLYGELRKWTSKCSF 474
            EVL   AA                   + V AD   + +E        +LR +      
Sbjct: 558 PEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGRE-------AQLRGFE----- 605

Query: 475 QIGPIHVVDEPFTV 488
               + +V EPFTV
Sbjct: 606 FAKAVTLVPEPFTV 619

Length = 651

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  153 bits (389), Expect = 2e-40
 Identities = 126/450 (28%), Positives = 201/450 (44%), Gaps = 82/450 (18%)

Query: 5   ILLWGKKSSVAPDIVEEIPV--FSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIA 62
           I+ +G  SS   +  EE+ V  FS++E   +G        D     K          DI 
Sbjct: 177 IVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL------DCELPPKQ-------KTDIC 223

Query: 63  TYVYTSGTTGNPKGVMLTHKNLLHQIRS------LYDIVPAENGDKFLSMLPPWHVYERA 116
           T +YTSGTTG PKGV+LT++ ++ ++ S      + D V  E  D + S LP  HVY++ 
Sbjct: 224 TIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEE-DSYFSYLPLAHVYDQV 282

Query: 117 CGYFIFSRGIELMY--TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 174
              +  S+G  + +    +R L +D+Q  +P     VP VY+ +Y+GI ++I +    R+
Sbjct: 283 IETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRK 342

Query: 175 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 234
            +        FAY  +K       L + +  P                          ++
Sbjct: 343 KL------FDFAYN-YKLGNLRKGLKQEEASP------------------------RLDR 371

Query: 235 LVYKKIQSAI-GISKAGVSGGGSLPMHIDLFYEAIGVKVQV-GYGLTES-SPVIAARRPT 291
           LV+ KI+  + G  +  +SG   LP H++ F       V   GYGLTES      +    
Sbjct: 372 LVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIANV 431

Query: 292 CNVLGSVGHPINHTEIKIV-------DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSAT 344
            +++G+VG P+   E ++        DA ++  +P   +G + +RG+ +  GY K    T
Sbjct: 432 FSMVGTVGVPMTTIEARLESVPEMGYDALSD--VP---RGEICLRGNTLFSGYHKRQDLT 486

Query: 345 KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEA 404
           ++ L  DGW +TGDIG   P+          G + +  R K+   LS GE V    LE  
Sbjct: 487 EEVL-IDGWFHTGDIGEWQPN----------GAMKIIDRKKNIFKLSQGEYVAVENLENT 535

Query: 405 ALRSSLIRQIVVIGQD-QRRPGAIIVPDKE 433
             R  LI  I V G   +    A++VPD++
Sbjct: 536 YSRCPLIASIWVYGNSFESFLVAVVVPDRQ 565

Length = 660

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  152 bits (386), Expect = 5e-40
 Identities = 126/434 (29%), Positives = 208/434 (47%), Gaps = 71/434 (16%)

Query: 22  IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTH 81
           +  +S+ + + +G+E+    S++N  +           DI T +YTSGT+G+PKGV+LTH
Sbjct: 195 VKTYSWIDFLHMGKENP---SETNPPK---------PLDICTIMYTSGTSGDPKGVVLTH 242

Query: 82  KNLLHQIRSLYDIVPAENGDK------FLSMLPPWHVYERACGYFIFSRGIELMYTA--V 133
           + +   +R + D+   +  DK      +LS LP  H+ +R    + F +G  + Y    +
Sbjct: 243 EAVATFVRGV-DLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDL 301

Query: 134 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI 193
             L+DDL   +P  +  VP V+E ++ GIQK +   +  RR++  AL +   A+    R 
Sbjct: 302 NALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAW--MNRG 359

Query: 194 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVS 252
           Y       + K+ S                   P   +A+ L ++K+++ +G   +  +S
Sbjct: 360 Y-------SHKKAS-------------------P---MADFLAFRKVKAKLGGRLRLLIS 390

Query: 253 GGGSLPMHIDLFYEAIGVKVQV-GYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIV 310
           GG  L   I+ F         V GYGLTE+  P          +LG+VG P  + E+++ 
Sbjct: 391 GGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLE 450

Query: 311 DAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 368
           +       P G   +G + VRG  +  GY+KNP  T++ + +DGW +TGDIG I P+   
Sbjct: 451 EVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPN--- 506

Query: 369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG--A 426
                  GVL +  R K+ I LS GE V    LE    ++ ++  I V G D  +    A
Sbjct: 507 -------GVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYG-DSFKSMLVA 558

Query: 427 IIVPDKEEVLMAAK 440
           ++VP++E     AK
Sbjct: 559 VVVPNEENTNKWAK 572

Length = 660

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  146 bits (371), Expect = 1e-39
 Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 51/256 (19%)

Query: 248 KAGVSGGGSLPM-HIDLFYEAIGVK-VQVGYGLTESSPVIAARRPTCNV---LGSVGHPI 302
           + G+SGG  +P   +    E   +  +  GYG+TE+S V              G+VG P+
Sbjct: 120 RTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPL 179

Query: 303 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
              E+KIVD +  EV P G  G + VRG  VM+GY+ +P AT +A+D DGWL+TGD+G++
Sbjct: 180 PGVEVKIVDPDGGEV-PPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYM 238

Query: 363 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 422
                        G L + GR KD I +  GEN+ P E+EEA L    + +  V+G    
Sbjct: 239 DED----------GYLRIVGRIKDMI-IRGGENIYPAEIEEALLTHPAVAEAAVVG---- 283

Query: 423 RPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP-- 478
                 VPD+   EV+ A   L       + L++E        EL  +   C  ++    
Sbjct: 284 ------VPDERLGEVVAAFVVL----KPGATLTEE--------ELIAF---CRGRLARFK 322

Query: 479 ----IHVVDE-PFTVN 489
               +  VDE P T +
Sbjct: 323 VPRYVRFVDELPRTAS 338

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  141 bits (358), Expect = 1e-36
 Identities = 69/202 (34%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 248 KAGVSGGGSLPMHIDLFYEAIGVKVQV--GYGLTESSPVIAA--RRPTCNVLGSVGHPIN 303
           +  +SGG  LP  +   +E     + +  GYGLTE+SPV+            GSVG P+ 
Sbjct: 294 RLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLP 353

Query: 304 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 363
             E++IVD +  EVLP G  G + VRG  VM+GY+  P AT +A DEDGWL TGD+G++ 
Sbjct: 354 GVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVD 412

Query: 364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD--- 420
                       G L + GR KD I+   GEN+ P E+E        + +  V+G     
Sbjct: 413 ED----------GYLYIVGRLKDLIISG-GENIYPEEIEAVLAEHPAVAEAAVVGVPDER 461

Query: 421 -QRRPGAIIVPDKEEVLMAAKR 441
              R  A++V            
Sbjct: 462 WGERVVAVVVLKPGGDAELTAE 483

Length = 534

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  138 bits (350), Expect = 2e-35
 Identities = 100/420 (23%), Positives = 179/420 (42%), Gaps = 76/420 (18%)

Query: 21  EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLT 80
           E  ++S+ E ++LGR          D +     E+   +   T +YTSGTTG PKGVML+
Sbjct: 119 EPNLYSWKEFMELGR-------SIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLS 171

Query: 81  HKNLLHQIRSL---YDIVPAENGDKFLSMLPPWHVYER-----------ACGYFIFSRGI 126
           H N+    ++     D+      +  +S LP  H+  +            C YF  ++  
Sbjct: 172 HDNITWTAKAAVKHMDLRT-VGQESVVSYLPLSHIAAQILDIWLPISVGGCVYF--AQPD 228

Query: 127 ELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISF- 185
            L  T V+ L++     +P   + VP V+E +   ++     S+  +R +A     +   
Sbjct: 229 ALKGTLVKTLRE----VRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLE 284

Query: 186 AYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG 245
                        +      P                        LA+KLV+KK++ A+G
Sbjct: 285 TNLK--------LMGGESPPPMC--------------------FRLAKKLVFKKVRKALG 316

Query: 246 ISKAGVSGGGSLPMHIDL--FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPIN 303
           + +      G+ P+  +   F+ ++ + +   YG++E+S       P    L S G  + 
Sbjct: 317 LDRCQKFFTGAAPISRETLEFFLSLNIPIMELYGMSETSGPHTVSNPQNYRLLSCGKALP 376

Query: 304 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 363
             E KI + + + +      G + + G  V  GY      T++A+DEDGWL++GD+G++ 
Sbjct: 377 GCETKIHNPDADGI------GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLD 430

Query: 364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA-LRSSLIRQIVVIGQDQR 422
                       G L + GR K+ I+ + GENV P+ +EEA      +I   +++G  ++
Sbjct: 431 DD----------GFLYITGRIKELIITAGGENVPPVPIEEAVKKELPIISNAMLVGDKRK 480

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  136 bits (345), Expect = 4e-35
 Identities = 79/227 (34%), Positives = 108/227 (47%), Gaps = 49/227 (21%)

Query: 251 VSGGGSLPM-HIDLFYEAIGVKVQVGYGLTESSPVIAA------RRPTCNVLGSVGHPIN 303
           +SGG  LP+   + F E  G  +  GYGLTE+SPV         R+P     GS+G P+ 
Sbjct: 248 ISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKP-----GSIGLPLP 302

Query: 304 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 363
            TE+KIVD E NE+ P G  G + VRG QVM+GY+  P  T + L  DGWL TGDIG++ 
Sbjct: 303 GTEVKIVDDEGNEL-PPGEVGELVVRGPQVMKGYWNRPEETAEVLT-DGWLRTGDIGYMD 360

Query: 364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 423
                       G   +  R KD I +  G NV P E+EE       + +  V+G     
Sbjct: 361 ED----------GYFYIVDRKKDMI-IVGGFNVYPREIEEVLYSHPAVLEAAVVG----- 404

Query: 424 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 468
                VPD    E + A     +V  + + L++E        EL  +
Sbjct: 405 -----VPDPYRGEAVKAF----VVLKEGASLTEE--------ELIAF 434

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  132 bits (333), Expect = 5e-34
 Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 18/172 (10%)

Query: 251 VSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCN--VLGSVGHPINHTE 306
           +SGG  LP   +    E  G V +  GYG TE++ V  A  P       GS+G P+   E
Sbjct: 253 LSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVE 312

Query: 307 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN--TGDIGWIAP 364
           +K++D E   V P G  G + +RG  V +GY  +P  T +   EDGW    TGD+G    
Sbjct: 313 VKVLDEEGEPV-PPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDE 371

Query: 365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 416
                      G L + GR  D + +  GE +EP E+E   L    + +  V
Sbjct: 372 D----------GYLEILGRKDDQVKIR-GERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  134 bits (340), Expect = 8e-34
 Identities = 132/485 (27%), Positives = 208/485 (42%), Gaps = 80/485 (16%)

Query: 9   GKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTS 68
           G  S  +        V S+ E+  LG+E+     D +             +DIA  +YTS
Sbjct: 212 GVDSDSSLSGSSNWTVSSFSEVEKLGKENP---VDPDLPSP---------NDIAVIMYTS 259

Query: 69  GTTGNPKGVMLTHKNLLHQIRSLYDIVPA-ENGDKFLSMLPPWHVYERACGYFIFSRGIE 127
           G+TG PKGVM+TH N++  +  +  +VP     D +L+ LP  H+ E A    + + G  
Sbjct: 260 GSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAA 319

Query: 128 LMYTAVRNLKD-----------DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVV 176
           + Y +   L D           D    +P  M +VP + + +  G++K++     A+  +
Sbjct: 320 IGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKV----DAKGGL 375

Query: 177 ARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID--WLWARIICAILWPLHLLAEK 234
           A+ L  I     A+KR                 +A I+  W  A  +  +LW      + 
Sbjct: 376 AKKLFDI-----AYKR----------------RLAAIEGSWFGAWGLEKLLW------DA 408

Query: 235 LVYKKIQSAIGISKAGV-SGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVIAARRPTC 292
           LV+KKI++ +G     + SGG  L      F    +G  +  GYGLTE+           
Sbjct: 409 LVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDD 468

Query: 293 NVLGSVGHPINHTEIKIVDAETNEVLPAGS---KGIVKVRGSQVMQGYFKNPSATKQA-- 347
             +G VG P+    +K+V  E    L +     +G + + G  V  GYFKN   T +   
Sbjct: 469 TSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYK 528

Query: 348 LDEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 405
           +DE G  W  TGDIG   P           G L +  R KD + L  GE V  L   EAA
Sbjct: 529 VDERGMRWFYTGDIGQFHPD----------GCLEIIDRKKDIVKLQHGEYVS-LGKVEAA 577

Query: 406 LRSSLIRQIVVIGQDQRRPG--AIIVPDKEEVLMAAKRLSIVHADASEL-SKEKTISLLY 462
           L  S     +++  D       A++VP ++ +   AK+  I +++ +EL  KE+ +  + 
Sbjct: 578 LSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQ 637

Query: 463 GELRK 467
             L K
Sbjct: 638 QSLSK 642

Length = 696

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  128 bits (324), Expect = 2e-33
 Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 37/238 (15%)

Query: 248 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHT 305
           +  +SGG  L    ++ F E  G  +  GYGLTE+S V +    +     G+VG P+   
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGV 178

Query: 306 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 365
           E+++VD E    LP G  G + VRG  VM+GY+ NP  T  A  EDGW  TGD+G++   
Sbjct: 179 EVRVVDEEGKP-LPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEE 237

Query: 366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 425
                     G L + GR+KD I    GENV P E+E   L+   + +  V+G       
Sbjct: 238 ----------GYLYITGRSKDLIK-VGGENVYPAEVESVLLQHPAVAEAAVVG------- 279

Query: 426 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD 483
            +   D+ E ++A     +V    ++   E        EL+        ++ P  V  
Sbjct: 280 -VPDEDRGERIVAF----VVLRPGADALAE--------ELKAH---LRERLAPYKVPR 321

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  127 bits (322), Expect = 8e-33
 Identities = 79/250 (31%), Positives = 112/250 (44%), Gaps = 53/250 (21%)

Query: 248 KAGVSGGGSLPMHIDL---FYEAIGVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPI 302
           +  + G    PM  +L     E  G     GYG+TE+ P      P   +  LGSVG P+
Sbjct: 118 RLIIYGAA--PMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPV 175

Query: 303 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
              E++IVD +  E+ P G  G + VRG  VM GY+  P AT +AL  DGWL+TGD+G++
Sbjct: 176 PGVEVRIVDEDGREL-PPGEVGEIVVRGPAVMAGYWNRPEATAEAL-RDGWLHTGDLGYL 233

Query: 363 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 422
                        G L +  R KD I+ S GEN+ P E+E   L    +  + VIG    
Sbjct: 234 DED----------GYLYIVDRKKDMII-SGGENIYPAEVENVLLAHPAVADVAVIG---- 278

Query: 423 RPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP-- 478
                 VPD+E  E ++A     +V    + L  E        EL  +   C  ++    
Sbjct: 279 ------VPDEEWGEAVVAV----VVLRPGATLDAE--------ELIAF---CRERLAGYK 317

Query: 479 ----IHVVDE 484
               +  VDE
Sbjct: 318 VPKSVEFVDE 327

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  131 bits (331), Expect = 1e-32
 Identities = 114/408 (27%), Positives = 171/408 (41%), Gaps = 65/408 (15%)

Query: 41  FSD-SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD--IVPA 97
           F D + +   +YK +    D I + VYTSGT+G PKGVML++KNL + +  L    I   
Sbjct: 285 FDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKK 344

Query: 98  ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--VRNLKDDLQRYQPHYMISVPLVY 155
            N    LS LP  H+YER   Y  F  G  +   +  +     D+   + + +  VP V+
Sbjct: 345 YNPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVF 404

Query: 156 ETLYSGIQKQIFTSSAARRVVARALI--RISFAYTAFKRIYEGFCLTRNQKQPSYLVALI 213
             +Y+ I  +I      +R + + ++  R S     F +  EG  +T             
Sbjct: 405 NRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEG--ITH------------ 450

Query: 214 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAGVSGGGSL-PMHIDLFYEAIGVK 271
                                 +  KI+  +  + +  ++GGG L P   +     + V 
Sbjct: 451 ----------------------ISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVN 488

Query: 272 VQVGYGLTESS-PVIAARRPTCNVLGSVGHPIN-HTEIKIVDAET---NEVLPAGSKGIV 326
              GYGLTE++ P+        N   S+G PI+ +T+ K+   ET    + LP   KG +
Sbjct: 489 YYQGYGLTETTGPIFVQHADDNNTE-SIGGPISPNTKYKVRTWETYKATDTLP---KGEL 544

Query: 327 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 386
            ++   +  GYF     TK A  EDG+  TGDI  I  +          G L    R+K 
Sbjct: 545 LIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKN----------GSLTFLDRSKG 594

Query: 387 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR-PGAIIVPDKE 433
            + LS GE +E   L     + S I   VV G D    P AII  DK 
Sbjct: 595 LVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKY 642

Length = 746

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  126 bits (319), Expect = 2e-31
 Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 27/222 (12%)

Query: 230 LLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAAR 288
           LL     Y    S++   +  + GG +LP   +  F E  G+ +  GYG+TE+SPV++  
Sbjct: 269 LLKAPRAYFVDFSSL---RLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVL 325

Query: 289 RPTCNVLG------SVGHPINHTEIKIVDAETNEVLP-AGSKGIVKVRGSQVMQGYFKNP 341
            P   + G      S G P+   E +IVD + +E+ P  G  G + VRG  +MQGY+  P
Sbjct: 326 PPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRP 385

Query: 342 SATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLEL 401
            AT + +D  GWL+TGD+G+I             G L +  R KD I+ S GEN+ P EL
Sbjct: 386 EATAETID-GGWLHTGDVGYIDED----------GYLYITDRIKDVII-SGGENIYPREL 433

Query: 402 EEAALRSSLIRQIVVIGQ-DQR---RPGAIIVPDKEEVLMAA 439
           E+A      + ++ VIG  D++   RP A++V      L A 
Sbjct: 434 EDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAK 475

Length = 521

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  126 bits (319), Expect = 3e-31
 Identities = 75/229 (32%), Positives = 112/229 (48%), Gaps = 48/229 (20%)

Query: 272 VQVGYGLTESSPVIAARRPTCNV---LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 328
           V + YG+TE+SPV    R    +   + +VG  + H E+KIVD ET E +P G +G +  
Sbjct: 344 VTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCT 403

Query: 329 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 388
           RG  VM+GY+ +P  T +A+D DGW++TGD+  +             G + + GR KD I
Sbjct: 404 RGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEE----------GYVNIVGRIKDMI 453

Query: 389 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVH 446
           +   GEN+ P E+EE       I+ + V+G          VPD++  E + A   L    
Sbjct: 454 I-RGGENIYPREIEEFLYTHPKIQDVQVVG----------VPDEKYGEEVCAWIIL---R 499

Query: 447 ADASELSKEKTISLLYGELRKWTSKCSFQIG----P--IHVVDE-PFTV 488
             A  L++E        ++R +   C  +I     P  I  VDE P TV
Sbjct: 500 PGA-TLTEE--------DVRDF---CRGKIAHYKIPRYIRFVDEFPMTV 536

Length = 559

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  127 bits (319), Expect = 3e-31
 Identities = 126/495 (25%), Positives = 212/495 (42%), Gaps = 76/495 (15%)

Query: 14  VAPDIVEE-----IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTS 68
           V+ +  EE     + ++++DE + LG              K Y        DI T +YTS
Sbjct: 185 VSREQKEEAETFGLVIYAWDEFLKLGEG------------KQYDLPIKKKSDICTIMYTS 232

Query: 69  GTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG-----DKFLSMLPPWHVYERACGYFIFS 123
           GTTG+PKGVM+++++++  I  +  ++ + N      D +LS LP  H+++R        
Sbjct: 233 GTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQ 292

Query: 124 RG--IELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALI 181
            G  I      V+ L +DL   +P    +VP V + +YSG+QK++      ++ V  +  
Sbjct: 293 HGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAF 352

Query: 182 RISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ 241
              F                 +K  S++ A                   L +KLV+ K++
Sbjct: 353 SYKFGNM--------------KKGQSHVEA-----------------SPLCDKLVFNKVK 381

Query: 242 SAIGIS-KAGVSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARRP-TCNVLGSV 298
             +G + +  +SG   L  H++ F   +    V  GYGLTES        P   ++LG+V
Sbjct: 382 QGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTV 441

Query: 299 GHPINHTEIKI--VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 356
           G P+ + +I++  V     + L +  +G + +RG  +  GY+K    TK+ L  DGWL+T
Sbjct: 442 GPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI-DGWLHT 500

Query: 357 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 416
           GD+G   P+          G + +  R K+   LS GE V    +E        +  + V
Sbjct: 501 GDVGEWQPN----------GSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWV 550

Query: 417 IGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSK-EKTISLLYGELRKWTSKCSFQ 475
            G         I    +++L      + V  D + L + EK    + GEL K   +   +
Sbjct: 551 YGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMK 610

Query: 476 ----IGPIHVVDEPF 486
               I  IH+   PF
Sbjct: 611 GFEIIKAIHLDPVPF 625

Length = 666

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  123 bits (312), Expect = 5e-31
 Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 27/173 (15%)

Query: 269 GVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 326
           G+ +   YG+TE++  +A  +P      LGSVG P+   E++IV+ +  E+L        
Sbjct: 213 GIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKPLPGRELRIVNPQDGEIL-------- 264

Query: 327 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 386
            VRG  +  GY      T   LDEDGW +TGD+G++    + G        L + GR  D
Sbjct: 265 -VRGPSLFLGYLPQGGLT-PPLDEDGWFHTGDLGYL---DAEGY-------LYVLGRRDD 312

Query: 387 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV 435
            I+ S GEN+ P E+E   L+   + +  V+G        RP A +VP+ + V
Sbjct: 313 LII-SGGENIYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPV 364

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  125 bits (317), Expect = 9e-31
 Identities = 103/386 (26%), Positives = 169/386 (43%), Gaps = 89/386 (23%)

Query: 20  EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGS-DDIATYVYTSGTTGNPKGVM 78
           E   + ++ +++  G            A  H+      + DD+A  +YTSGTTG+PKGVM
Sbjct: 234 EGCRLVAWTDVVAKGHS----------AGSHHPLNIPENNDDLALIMYTSGTTGDPKGVM 283

Query: 79  LTHKNLLHQIRSLYD-----IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV 133
            TH +L   I +L D     I P E  + + S LP  H+ E        +RG  + + + 
Sbjct: 284 HTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSP 343

Query: 134 RNLKD-------DLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFA 186
           R L D       DL  ++P ++I VP +++T+   ++ ++    + +R V          
Sbjct: 344 RTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRV---------- 393

Query: 187 YTAFKRIYEGFCLTRNQKQPSYLVALID------WLWARIICAILWPLHLLAEKLVYKKI 240
              F   Y+           S L AL +      W                  + V+   
Sbjct: 394 ---FDHAYQ-----------SRLRALKEGKDTPYW-----------------NEKVFSAP 422

Query: 241 QSAIGIS-KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRP---TCNVL 295
           ++ +G   +A +SGGG L      F   + G+ +Q G+GLTE+      +R      N  
Sbjct: 423 RAVLGGRVRAMLSGGGPLSAATQEFVNVVFGMVIQ-GWGLTETVCCGGIQRTGDLEPN-- 479

Query: 296 GSVGHPINHTEIKIVDAE----TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED 351
            +VG  +   E+K++D E    T+   P   +G + +RG  + +GY+K    T++ LDED
Sbjct: 480 -AVGQLLKGVEMKLLDTEEYKHTDTPEP---RGEILLRGPFLFKGYYKQEELTREVLDED 535

Query: 352 GWLNTGDIGWIAPHHSRGRSRRCGGV 377
           GW +TGD+G IA +   G  R  G V
Sbjct: 536 GWFHTGDVGSIAAN---GTLRIIGRV 558

Length = 700

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  123 bits (310), Expect = 3e-30
 Identities = 77/215 (35%), Positives = 100/215 (46%), Gaps = 31/215 (14%)

Query: 251 VSGGGSLPM-HIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPINHTE 306
            SG   L     + F     GV++  GYG+TESSPV             GSVG  + + E
Sbjct: 281 GSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVE 340

Query: 307 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 366
            KIVD ET E LP    G + VRG QVM+GY  NP AT + +D+DGWL+TGD+G+     
Sbjct: 341 AKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDE-- 398

Query: 367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA 426
                    G L +  R K+ I    G  V P ELE   L    I    VI         
Sbjct: 399 --------DGYLFIVDRLKELIKYK-GFQVAPAELEALLLSHPEIADAAVIP-------- 441

Query: 427 IIVPDKE--EVLMAAKRLSIVHADASELSKEKTIS 459
              PD+E  E+ MA     +V    SELS+++ + 
Sbjct: 442 --YPDEEAGEIPMAF----VVRQPGSELSEDEVMQ 470

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  121 bits (307), Expect = 6e-30
 Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 29/217 (13%)

Query: 248 KAGVSGGGSLPMH-IDLFYEAIGVK-VQVGYGLTESSPVIA---ARRPTCNVLGSVGHPI 302
           +  V+G  S+P+  ++ F   +GV  V  GYGL+E+S V            V G++G  I
Sbjct: 284 RLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAI 343

Query: 303 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
              E KIV+    EV P G  G + VRG  VM+GY+ +P AT  A+D DGWL+TGD+G +
Sbjct: 344 AGVENKIVNELGEEV-PVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRL 402

Query: 363 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 422
                 G        L +  R KD   +  G NV P E+EE       + +  VIG    
Sbjct: 403 DE---EGY-------LYIVDRKKDMF-IVGGFNVYPAEVEEVLYEHPAVAEAAVIG---- 447

Query: 423 RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTIS 459
                 VPD  E L    +  +V    +EL++E+ I+
Sbjct: 448 ------VPD--ERLGEVGKAYVVLKPGAELTEEELIA 476

Length = 513

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  118 bits (299), Expect = 4e-29
 Identities = 61/173 (35%), Positives = 83/173 (47%), Gaps = 24/173 (13%)

Query: 276 YGLTE-----SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 330
           YG+TE     S+P+   RRP     G+VG P+   E++IVD +  E L AG  G ++VRG
Sbjct: 238 YGMTETGMALSNPLDGERRP-----GTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRG 292

Query: 331 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 390
             V   Y+  P AT +A  EDGW  TGD+G               G   + GR  D I+ 
Sbjct: 293 PNVFSEYWNKPEATAEAFTEDGWFKTGDVGV----------VDEDGYYRILGRKSDDIIK 342

Query: 391 STGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA 439
           S G  V  LE+EEA L    + ++ VIG           A++VP+    L  A
Sbjct: 343 SGGYKVSALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLA 395

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  119 bits (301), Expect = 5e-29
 Identities = 100/386 (25%), Positives = 146/386 (37%), Gaps = 89/386 (23%)

Query: 55  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE 114
           T   D++A  ++TSGT G PKGVMLTH N+L   R+    +     D F+   P  H   
Sbjct: 183 TTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGH--- 239

Query: 115 RACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR 174
            A G+                          H + +  L+       +   IFT  A   
Sbjct: 240 -ATGFL-------------------------HGVTAPFLIGARS---VLLDIFTPDACLA 270

Query: 175 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK 234
           ++ +         T F  IY+   L   +KQP+ L AL  +L                  
Sbjct: 271 LLEQQRCTCMLGATPF--IYDLLNLL--EKQPADLSALRFFL------------------ 308

Query: 235 LVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSP--VIAARRPTC 292
                             GG ++P  +    +  G+K+   YG TESSP  V+    P  
Sbjct: 309 -----------------CGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLS 351

Query: 293 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 352
             + + G+     EIK+VD     + P G +G    RG  V  GY   P  T +ALDE+G
Sbjct: 352 RFMHTDGYAAAGVEIKVVDEARKTL-PPGCEGEEASRGPNVFMGYLDEPELTARALDEEG 410

Query: 353 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 412
           W  +GD+  +      G  +       + GR KD IV   GEN+   E+E+  L+   I 
Sbjct: 411 WYYSGDLCRM---DEAGYIK-------ITGRKKDIIV-RGGENISSREVEDILLQHPKIH 459

Query: 413 QIVVIGQDQRRPG----AIIVPDKEE 434
              V+     R G    A +V     
Sbjct: 460 DACVVAMPDERLGERSCAYVVLKAPH 485

Length = 547

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  116 bits (292), Expect = 1e-28
 Identities = 63/189 (33%), Positives = 88/189 (46%), Gaps = 21/189 (11%)

Query: 252 SGGGSLPM-HIDLFYEAIGVKVQVGYGLTESSPVIAAR--RPTCNVLGSVGHPINHTEIK 308
           S    LP   +D   +  GV V   YG+TE++  IA+    P     GSVG P    E+ 
Sbjct: 125 SASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAG-VEVA 183

Query: 309 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 368
           I+D +    LP G +G + +RG  V  GY  NP A ++A   DGW  TGD+G++      
Sbjct: 184 ILD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAF-RDGWFRTGDLGYLDED--- 238

Query: 369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR---RP 424
                  G L L GR K+ I    GE + P E+EE  LR   + + VV G  D+      
Sbjct: 239 -------GYLFLTGRIKELINRG-GEKISPREVEEVLLRHPAVAEAVVFGVPDELYGEEV 290

Query: 425 GAIIVPDKE 433
            A +V   +
Sbjct: 291 AAAVVLRAD 299

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  116 bits (294), Expect = 3e-28
 Identities = 70/208 (33%), Positives = 93/208 (44%), Gaps = 29/208 (13%)

Query: 262 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 321
           +LF E  G+++  GYG TE SPVI+   P  N  G+VG P+   E++IV  ET+E LP G
Sbjct: 277 ELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPETHEELPIG 336

Query: 322 SKGIVKVRGSQVMQGYFKNPSATK-QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVL 380
             G++ VRG  VM GY  N   T    +  DGW +TGDIG I             G L +
Sbjct: 337 EGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDED----------GFLTI 386

Query: 381 EGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ---IVVIGQDQRRPGAIIV-------P 430
            GR K    +  GE V  L   E  L   L        V   D+++ G  IV        
Sbjct: 387 VGRLKRFAKIG-GEMV-SLTAVEELLSEILPEDSLHAAVEVPDEKK-GEKIVLLTTTEDL 443

Query: 431 DKEEVLMAAKRLSIVHADASELSKEKTI 458
           D EE+    +      A    L+  + I
Sbjct: 444 DPEELNAILR-----EAGLPNLAVPRKI 466

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  116 bits (292), Expect = 8e-28
 Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 49/229 (21%)

Query: 272 VQVGYGLTESSPVI---AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 328
           VQ+ YG+TE+SPV     A       + +VG    H E+K+VD +    +P G  G +  
Sbjct: 346 VQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCT 404

Query: 329 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 388
           RG  VM+GY+ NP AT +++DEDGW++TGD+  +             G + + GR+KD I
Sbjct: 405 RGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQ----------GYVRIVGRSKDMI 454

Query: 389 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVH 446
           +   GEN+ P E+EE       +  + V G          VPD++  E ++A  RL   H
Sbjct: 455 I-RGGENIYPREIEEFLFTHPAVADVQVFG----------VPDEKYGEEIVAWVRLHPGH 503

Query: 447 ADASELSKEKTISLLYGELRKWTSKCSFQIG----PIHV--VDE-PFTV 488
           A + E            ELR++   C  +I     P +   VDE P TV
Sbjct: 504 AASEE------------ELREF---CKARIAHFKVPRYFRFVDEFPMTV 537

Length = 558

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  113 bits (286), Expect = 2e-27
 Identities = 57/172 (33%), Positives = 77/172 (44%), Gaps = 19/172 (11%)

Query: 251 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS-PVIAARRPTCNVLGSVGHPINHTEIKI 309
           V G          F E  GVK+  GYG+TE+  P+IA   P     GS G P    E++I
Sbjct: 201 VFGAPLPAAIWPAFEERFGVKLVEGYGMTETGVPIIAPGDP--APPGSCGRPRPGVEVRI 258

Query: 310 VDAETNEVLPAGSKGIVKVRGSQ---VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 366
           VD +  EV P G  G + VR  +   + +GY+  P AT +A   +GW +TGD G      
Sbjct: 259 VDEDGREV-PPGEVGELVVRPRRPWAMFKGYYGMPEATAKAW-RNGWFHTGDRGRRDED- 315

Query: 367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 418
                    G L    R KD I    GEN+   E+E A L    + +  V+ 
Sbjct: 316 ---------GFLYFVDRKKDAIRRR-GENISSYEVEAAILAHPAVAEAAVVA 357

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  113 bits (285), Expect = 5e-27
 Identities = 61/194 (31%), Positives = 85/194 (43%), Gaps = 17/194 (8%)

Query: 252 SGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 309
           SG   L   + +   +      ++ GYG+TE+ P      P     GSVG  + + E KI
Sbjct: 270 SGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNVEAKI 329

Query: 310 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 369
           VD +  + L    +G + V+G Q+M+GY  NP ATK+ +DEDGWL+TGDIG+        
Sbjct: 330 VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDE----- 384

Query: 370 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG----QDQRRPG 425
                 G   +  R K+ I    G  V P ELE   L    +    VIG         P 
Sbjct: 385 -----DGNFYIVDRKKELIKYK-GYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPR 438

Query: 426 AIIVPDKEEVLMAA 439
           A +V      L   
Sbjct: 439 AYVVLKPGSKLTEQ 452

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  113 bits (284), Expect = 8e-27
 Identities = 69/184 (37%), Positives = 99/184 (53%), Gaps = 17/184 (9%)

Query: 248 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 306
           K  +SGG +L +     ++ + G  +  GYG+TE+SPV++        +G++G P+  T 
Sbjct: 329 KLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTL 388

Query: 307 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 366
            K++D + NE LP G  G + V+G QVM+GY++ P AT + LD DGWL TGDI  I    
Sbjct: 389 CKVIDDDGNE-LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQED- 446

Query: 367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE--AALRSSLIRQIVVIGQDQRRP 424
                    G + +  R KD I++S G NV P ELE+  AAL   L  Q   IG    + 
Sbjct: 447 ---------GYMRIVDRKKDMILVS-GFNVYPNELEDVLAALPGVL--QCAAIGVPDEKS 494

Query: 425 GAII 428
           G  I
Sbjct: 495 GEAI 498

Length = 562

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  111 bits (280), Expect = 3e-26
 Identities = 76/236 (32%), Positives = 112/236 (47%), Gaps = 46/236 (19%)

Query: 236 VYKKIQSAI---GISKAGV----SGGGSLPMHIDLFYEAI--GVKVQVGYGLTESSPVIA 286
           +Y+KI  A    G+  +GV    SG  +LP+     +E +  G+ V+ GYGLTE+SP+I 
Sbjct: 320 LYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVE-GYGLTETSPIIV 378

Query: 287 A------RRPTCNVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVRGSQVMQGYFK 339
                  RRP     G VG P   TE++IVD E  +E +P G +G + VRG QV +GY+ 
Sbjct: 379 GNPMSDDRRP-----GYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWN 433

Query: 340 NPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL 399
            P  T ++   DGW  TGD+  +             G + +  R K+ I+ + G NV P 
Sbjct: 434 RPEETAKSF-LDGWFRTGDVVVMEED----------GFIRIVDRIKELII-TGGFNVYPA 481

Query: 400 ELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKE 455
           E+EE       +    V+G     P      D  E ++AA    +V    + L  E
Sbjct: 482 EVEEVLREHPGVEDAAVVG----LPR----EDGSEEVVAA----VVLEPGAALDPE 525

Length = 573

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  110 bits (277), Expect = 7e-26
 Identities = 67/177 (37%), Positives = 97/177 (54%), Gaps = 16/177 (9%)

Query: 252 SGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTCNV--LGSVGHPINHTEIK 308
           SGG +L       +E + G  +  GYGLTE+SPV A+  P   +  LG+VG P+  T +K
Sbjct: 340 SGGTALVKATAERWEQLTGCTIVEGYGLTETSPV-ASTNPYGELARLGTVGIPVPGTALK 398

Query: 309 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 368
           ++D + NE LP G +G + ++G QVM+GY++ P AT +ALD +GW  TGDI  I P    
Sbjct: 399 VIDDDGNE-LPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPD--- 454

Query: 369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 425
                  G + +  R KD I++S G NV P E+E+  +    +     IG    R G
Sbjct: 455 -------GFVRIVDRKKDLIIVS-GFNVYPNEIEDVVMAHPKVANCAAIGVPDERSG 503

Length = 562

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  109 bits (274), Expect = 1e-25
 Identities = 68/177 (38%), Positives = 96/177 (54%), Gaps = 22/177 (12%)

Query: 248 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAA-----RRPTCNVLGSVGHP 301
           +A +SG   LP+ +   +E + G K+  GYGLTESSPV  +     +R    V GS+G P
Sbjct: 326 RACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKR----VPGSIGVP 381

Query: 302 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
              TE  I+  ET E LP G  G + V+G Q+M+GY+  P  T   L +DGWL+TGD+G+
Sbjct: 382 WPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGY 440

Query: 362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 418
           +             G   ++ R KD IV S G NV P E+EE       ++++V IG
Sbjct: 441 MDED----------GFFYVKDRKKDMIVAS-GFNVYPREVEEVLYEHEKVQEVVTIG 486

Length = 563

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  106 bits (266), Expect = 9e-25
 Identities = 68/221 (30%), Positives = 102/221 (46%), Gaps = 36/221 (16%)

Query: 251 VSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCN---VLGSVGHPINHTE 306
           + GG  +P        EA+G KV   YG+TE  P++    P         + G P+   E
Sbjct: 214 LCGGAPVPRELARRAAEALGAKVVRAYGMTEV-PLVTVGTPDDPDDKRAATDGRPVPGVE 272

Query: 307 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 366
           ++IVD + N+V P G +G ++VRG Q+  GY   P  T+   D DGW  TGD+G +    
Sbjct: 273 VRIVDDDGNDV-PPGEEGELQVRGPQLFLGYLDPPDNTEAFTD-DGWFRTGDLGRLDAD- 329

Query: 367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR--- 422
                    G L + GR KD I+   GEN+   E+E+  LR   + ++ V+   D+R   
Sbjct: 330 ---------GYLRITGRKKDIIIRG-GENISAREIEDLLLRHPAVAEVAVVAMPDERLGE 379

Query: 423 RPGAIIVP------DKEEVLMAAKRLSIVHADASELSKEKT 457
           R  A++VP         E+          H  A  L+K+K 
Sbjct: 380 RVCAVVVPAPGASLTLAELTE--------HLAAQGLAKQKW 412

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  104 bits (261), Expect = 8e-24
 Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 17/177 (9%)

Query: 247 SKAGVSGGGSLPMH---IDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPI 302
           S   +S GG + +     + + +  G  +  GYGLTE SP+++          GS+G P+
Sbjct: 325 SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPV 384

Query: 303 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
             TEIK+VD + NEV P G  G + V+G QVM GY++ P AT + + +DGWL TGDI  +
Sbjct: 385 PSTEIKLVDDDGNEV-PPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVM 442

Query: 363 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 419
                        G L +  R KD I++S G NV P E+E+  +    + ++  +G 
Sbjct: 443 DEE----------GFLRIVDRKKDMILVS-GFNVYPNEIEDVVMLHPKVLEVAAVGV 488

Length = 560

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  103 bits (258), Expect = 2e-23
 Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 262 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 321
             F         +   LT      AA  P       +G PI    I+IVD E   +LP G
Sbjct: 340 RGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-EDGALLPEG 398

Query: 322 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLE 381
             G ++VRG  V  GY++NP A  +A  EDGW  TGD+G++  H          G L + 
Sbjct: 399 EVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFL--HD---------GRLTIT 447

Query: 382 GRAKDTIVLSTGENVEPLELEEA 404
           GR KD I+++ G N    E+E A
Sbjct: 448 GREKDMIIIN-GVNYYNHEIEAA 469

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  100 bits (250), Expect = 8e-23
 Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 27/201 (13%)

Query: 246 ISKAGVSGGGSLPMHIDL---FYEAIGVKVQVGYGLTESSP---VIAARRPTCNVLGSVG 299
           +S   V GGG   +   +        G+  + GYGLTE+          RP       +G
Sbjct: 198 LSSLKVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPK---PQCLG 254

Query: 300 HPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNT 356
            P+  T+ +++D ET E LP G +G + VRG QV +GY+  P AT ++    D   +  T
Sbjct: 255 IPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRT 314

Query: 357 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 416
           GD+G+I             G      R K  I +S G  V P E+E    +   + ++ V
Sbjct: 315 GDLGYIDEE----------GYFFFLDRVKRMINVS-GYKVWPAEVEALLYQHPAVLEVCV 363

Query: 417 IGQ-DQRR---PGAIIVPDKE 433
           IG+ D RR     A +V   +
Sbjct: 364 IGRPDPRRGEVVKAFVVLKPD 384

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  100 bits (251), Expect = 1e-22
 Identities = 64/208 (30%), Positives = 94/208 (45%), Gaps = 34/208 (16%)

Query: 251 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT-----------CNVLGSVG 299
           V GG +LP  +    E  GV+V   +G+TE+SP+    R               +    G
Sbjct: 285 VVGGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQG 344

Query: 300 HPINHTEIKIVDAETNEVLPAG-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 358
            P+   E++IVD E NE+   G + G + VRG  V   Y+K+P  T+  L  DGW  TGD
Sbjct: 345 RPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTE-ELTRDGWFRTGD 403

Query: 359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 418
           +  I             G + +  RAKD I  S GE +  +ELE A +    + +  V+G
Sbjct: 404 VAVIDED----------GYIQITDRAKDVIK-SGGEWISSVELENALMAHPAVAEAAVVG 452

Query: 419 QD----QRRPGAIIVP------DKEEVL 436
                   RP A++V        +EE+L
Sbjct: 453 VPHEKWGERPLAVVVLKPGAKVTEEELL 480

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 99.6 bits (249), Expect = 2e-22
 Identities = 53/168 (31%), Positives = 75/168 (44%), Gaps = 28/168 (16%)

Query: 297 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ------ALDE 350
           S G P+   E++IVD ET   LP G  G + VRG  V  GY+  P AT +      A DE
Sbjct: 356 SCGRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDE 415

Query: 351 DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL 410
            GWL TGD+G++             G L + GR KD I++  G N  P ++E    R+  
Sbjct: 416 GGWLRTGDLGFLH-----------DGELYVTGRLKDLIIIR-GRNHYPQDIEATVERAHP 463

Query: 411 IRQIVVIGQDQRRPGAIIVPDKEE---VLMAAKRLSIVHADASELSKE 455
             +            A  V    E   V++A  R   + AD + L++ 
Sbjct: 464 ALRPG-------AAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEA 504

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  100 bits (251), Expect = 3e-22
 Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 14/126 (11%)

Query: 251  VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP----------TCNVLGSVG 299
            V+G   L   + D F E  G+++  GYG TE+SPV +   P          T +  GSVG
Sbjct: 904  VAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVG 963

Query: 300  HPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNT 356
             P+    ++IVD ET E LP G  G++ + G QVM+GY  +P  T + +   D  GW  T
Sbjct: 964  MPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVT 1023

Query: 357  GDIGWI 362
            GD G +
Sbjct: 1024 GDKGHL 1029

Length = 1146

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 98.9 bits (247), Expect = 4e-22
 Identities = 52/138 (37%), Positives = 76/138 (55%), Gaps = 21/138 (15%)

Query: 297 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 356
            VG PI+  EI+IVD +  EVLP  + G ++++G  V  GY+ NP ATK+++  DGWL T
Sbjct: 315 EVGSPIDGCEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKT 373

Query: 357 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 416
           GD+G++             G LV+ GRAKD I+++ G+N  P ++E  A          V
Sbjct: 374 GDLGFLR-----------NGRLVITGRAKDIIIVN-GQNYYPHDIERVA--------EQV 413

Query: 417 IGQDQRRPGAIIVPDKEE 434
            G    R  A  V D++E
Sbjct: 414 EGIKLGRVAACGVYDEKE 431

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 98.5 bits (246), Expect = 5e-22
 Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 5/93 (5%)

Query: 275 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 329
           GYG+TE+ PV+A     A+ P     GS G  + + E+KIVD ET   LP    G + +R
Sbjct: 330 GYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIR 389

Query: 330 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
           G Q+M+GY  +P AT   +D+DGWL+TGDIG+I
Sbjct: 390 GPQIMKGYLNDPEATANTIDKDGWLHTGDIGYI 422

Length = 537

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score = 97.0 bits (242), Expect = 8e-22
 Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 6/181 (3%)

Query: 2   RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKY-ETIGSDD 60
           + +I        +   +++ + + +   + D G        +             +  DD
Sbjct: 73  KVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGASAEPPAPPVDPDD 132

Query: 61  IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF 120
           +A  +YTSGTTG PKGVMLTH+NLL     L +      GD+ L +LP          + 
Sbjct: 133 LAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLPLHFDGSVWEIFG 192

Query: 121 IFSRGIELM-----YTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRV 175
               G  L+           L D +++Y+   +  VP +   L    +++ +  S+ R V
Sbjct: 193 PLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEEKKYDLSSLRLV 252

Query: 176 V 176
           +
Sbjct: 253 L 253

Length = 412

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 98.0 bits (244), Expect = 9e-22
 Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 29/199 (14%)

Query: 252 SGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVI-------AARRPTCNVLGSVGHPINH 304
           +GG   P  +   +   G     G+G+TE+SP +       A R+      GS+G P+  
Sbjct: 271 NGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKV-----GSIGKPVLF 325

Query: 305 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 364
            + +++D   N+V   G  G + +RG  VM+ Y+  P AT++ + +DGWL TGD+  +  
Sbjct: 326 CDYELIDENKNKV-EVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDE 383

Query: 365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR- 423
                      G + + GR K+ I+ S GEN+ PLE+E+   + S + ++ V+G+   + 
Sbjct: 384 D----------GFVYIVGRKKEMII-SGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKW 432

Query: 424 ---PGAIIVPDKEEVLMAA 439
              P A IV     VL+  
Sbjct: 433 GEIPIAFIVKKSSSVLIEK 451

Length = 496

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 20/164 (12%)

Query: 276 YGLTESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 333
           YG+TE++  I    P      LGS G P+   E+KI       V+P   +G + V+G  V
Sbjct: 285 YGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGV--VVPPFEEGEIVVKGPNV 342

Query: 334 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 393
            +GY     AT++   +DGW  TGDIG++             G L +  R  D I+ S G
Sbjct: 343 TKGYLNREDATRETF-QDGWFKTGDIGYLDEE----------GFLYVLDRRSDLII-SGG 390

Query: 394 ENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKE 433
           EN+ P E+EE  L    + +  V+G    +    P A +V   E
Sbjct: 391 ENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGE 434

Length = 483

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 13/155 (8%)

Query: 265 YEAIGVKVQVGYGLTESSPVIAARRPTCNVL-GSVGHPINHTEIKIVDAETNEVLPAGSK 323
            E  G  +  GYGL+E+SPV            G++G P+  TE+ I D + N+ LP G  
Sbjct: 348 LEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGND-LPLGEP 406

Query: 324 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 383
           G + +RG QVM GY+  P  T + +  DG+  TGD+G +     RG ++       +  R
Sbjct: 407 GEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDE---RGYTK-------IVDR 456

Query: 384 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 418
            KD I++S G NV P E+EE       + ++  +G
Sbjct: 457 KKDMILVS-GFNVYPNEIEEVVASHPGVLEVAAVG 490

Length = 557

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 94.2 bits (235), Expect = 1e-20
 Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 21/132 (15%)

Query: 276 YGLTE-----SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 330
           YG+TE     S+P    RR      G+VG P+    +++ D ET   LP G  G+++V+G
Sbjct: 301 YGMTETNMNTSNPYDGERRA-----GTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKG 355

Query: 331 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL 390
             V +GY++ P  T +    DG+  TGD+G I             G + + GR KD I+ 
Sbjct: 356 PNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDER----------GYVHIVGRGKDLII- 404

Query: 391 STGENVEPLELE 402
           S G NV P E+E
Sbjct: 405 SGGYNVYPKEVE 416

Length = 504

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 59/173 (34%), Positives = 80/173 (46%), Gaps = 32/173 (18%)

Query: 248 KAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA------RRPTCNVLGSVGH 300
           +  ++G   LP+ +   F    GV V  GYG+TE + V A       RRP     GSVG 
Sbjct: 125 RYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRP-----GSVGL 179

Query: 301 PINHTEIKIV----DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 356
            + +T +++               G  G++ +RG  V  GY  N +    A  EDGWLNT
Sbjct: 180 RLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-NDAHNAGARLEDGWLNT 238

Query: 357 GDIGWIAPHHSRGRSRRCG--GVLVLEGRAKDTIVLSTGENVEPLELEEAALR 407
           GD+G            R    G L L GRAKD I+   G N++P  +EEA LR
Sbjct: 239 GDLG------------RIDADGYLWLTGRAKDLIIRG-GHNIDPQMIEEALLR 278

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 92.3 bits (230), Expect = 2e-20
 Identities = 62/214 (28%), Positives = 88/214 (41%), Gaps = 40/214 (18%)

Query: 252 SGGGSLPMHIDLFYEAI-GVKVQVGYGLTESS------PVIAARRPTCNVLGSVGHPINH 304
           +GG      I     A    K+   YGLTE+       P    RRP      S+G  I +
Sbjct: 125 AGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRP-----DSIGKAIPN 179

Query: 305 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-----DGWLNTGDI 359
            E+ +VD + N   P G  G +  RG+ VM+GY+ +P AT + L       +  L TGD+
Sbjct: 180 VELWVVDEDGNRCAP-GEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDL 238

Query: 360 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 419
             +             G L   GR KD ++ + G  V P E+EE      L+ +  VIG 
Sbjct: 239 VRMDEE----------GYLYFVGR-KDDMIKTRGYRVSPTEIEEVICAHPLVAEAAVIGV 287

Query: 420 DQRRPGAIIV----------PDKEEVLM-AAKRL 442
                G  IV           D++E+L    K L
Sbjct: 288 PDPLLGQAIVAVVVSADGESLDEKELLKHCRKHL 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 63/178 (35%), Positives = 84/178 (47%), Gaps = 33/178 (18%)

Query: 266 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 325
            A+G+ V  GYGL+E + V++   P  +  GSVG P+ H ++ I  A   E+L       
Sbjct: 258 RALGLPVYEGYGLSECASVVSLNTPGADRPGSVGKPLPHVQVSI--ANDGEIL------- 308

Query: 326 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 385
             VRGS  M GY   P AT      D W  TGD+G +             G L + GR K
Sbjct: 309 --VRGSL-MLGYLGEPPAT------DDWWATGDLGHLDEE----------GYLYINGRKK 349

Query: 386 DTIVLSTGENVEPLELEEAALRSSL-IRQIVVIGQDQRRPGAIIVPDKE---EVLMAA 439
           + I+ S G NV P E  E+ L+ +  I Q VV G  Q    A+IVP      + L AA
Sbjct: 350 NLIITSFGRNVSP-EWVESELQQAPAIAQAVVFGDAQPFLVALIVPAPNISDDQLEAA 406

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 93.2 bits (232), Expect = 4e-20
 Identities = 106/467 (22%), Positives = 167/467 (35%), Gaps = 130/467 (27%)

Query: 52  KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP--P 109
               I  D +A Y++TSG+TG PK V+ T + +   I     + P E        L   P
Sbjct: 213 AIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMP 272

Query: 110 WH------------VYERACGYFIFSRGI-ELMYTAVRNLKDDLQRYQPHYMISVPLVYE 156
           W+            ++     Y    + +  +    +RNL++      P    +VP  Y 
Sbjct: 273 WNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLRE----ISPTVYGNVPAGYA 328

Query: 157 TLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI----YEGFCLTRNQKQPSYLVAL 212
            L   ++K                +R SF    FK +    Y G               L
Sbjct: 329 MLAEAMEKD-------------DALRRSF----FKNLRLMAYGG-------------ATL 358

Query: 213 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKV 272
            D L+ R+                      A+ +   G         H   FY       
Sbjct: 359 SDDLYERM---------------------QALAVRTTG---------HRIPFY------- 381

Query: 273 QVGYGLTESSPVI-----AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 327
             GYG TE++P          R      G +G P+   E+K+         P G K  V+
Sbjct: 382 -TGYGATETAPTTTGTHWDTERV-----GLIGLPLPGVELKLA--------PVGDKYEVR 427

Query: 328 VRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHH-SRGRSRRCGGVLVLEGRAK 385
           V+G  V  GY K+P  T  A DE+G+   GD   ++ P    +G        L+ +GR  
Sbjct: 428 VKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKG--------LIFDGRVA 479

Query: 386 DTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS 443
           +   LSTG   +V  L  +  A  S +I   VV GQD+   G +  P+      A ++L+
Sbjct: 480 EDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPN----PAACRQLA 535

Query: 444 IVHADASE--LSKEKTISLLYGELRKWTSKC---SFQIGPIHVVDEP 485
                A E  +     +++L   L    ++    S +I    ++ EP
Sbjct: 536 GDPDAAPEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEP 582

Length = 624

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 92.1 bits (229), Expect = 5e-20
 Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 27/189 (14%)

Query: 253 GGGSLPMHIDLFYEAI--GVKVQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKI 309
           GG ++P    L  EA   G+ + + YG+TE+ S V  A     +    VG P+   EIKI
Sbjct: 227 GGSAIP--APLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKI 284

Query: 310 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 369
                         G + V+G+ +M+GY      T  A ++ GW NTGDIG +       
Sbjct: 285 KVDNKEGH------GEIMVKGANLMKGYLYQGELT-PAFEQQGWFNTGDIGELDGE---- 333

Query: 370 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPG 425
                 G L + GR  D I+ S GEN+ P E+E    +   I++ VV+   D      P 
Sbjct: 334 ------GFLYVLGRRDDLII-SGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPV 386

Query: 426 AIIVPDKEE 434
           A IV + + 
Sbjct: 387 AYIVSESDI 395

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 92.2 bits (229), Expect = 6e-20
 Identities = 68/238 (28%), Positives = 103/238 (43%), Gaps = 43/238 (18%)

Query: 242 SAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV---------IAARRPTC 292
           +A+    A  +GG        L +   G+ +  G+G++E+  V         I A+    
Sbjct: 249 AALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAK---- 304

Query: 293 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 352
              G+ G P    + ++VD + N+  PAG  G + +RG  +  GY++ P AT +A   DG
Sbjct: 305 --AGAAGIPTPTVQTRVVDDQGNDC-PAGVPGELLLRGPNLSPGYWRRPQATARAFTGDG 361

Query: 353 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 412
           W  TGDI            R   G   +  R KD + +S GENV P E+E        IR
Sbjct: 362 WFRTGDIA----------RRDADGFFWVVDRKKD-MFISGGENVYPAEIEAVLADHPGIR 410

Query: 413 QIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 468
           +  V+G          + D +  EV      L+IV AD + L  E+  S L   L K+
Sbjct: 411 ECAVVG----------MADAQWGEV----GYLAIVPADGAPLDLERIRSHLSTRLAKY 454

Length = 488

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 91.5 bits (228), Expect = 8e-20
 Identities = 49/190 (25%), Positives = 72/190 (37%), Gaps = 32/190 (16%)

Query: 264 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT---------EIKIVDAET 314
             E +G  +Q  +G+ E              L      I  T         EI+IVD + 
Sbjct: 275 VEERLGCPLQQVFGMAEGLV-------NYTRLDDPPDVIMRTQGRPISPADEIRIVDDQG 327

Query: 315 NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 374
             V P G  G +  RG   ++GY++ P    +A  +DG+  TGD+  I            
Sbjct: 328 EPV-PPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDA---------- 376

Query: 375 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPGAIIVP 430
            G   + GR KD I    GE + P E+E   L    +    V+G  D+    R  A +VP
Sbjct: 377 DGYYRVVGRIKDQINRG-GEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVP 435

Query: 431 DKEEVLMAAK 440
                   A+
Sbjct: 436 RGGAAPTLAE 445

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 90.0 bits (224), Expect = 3e-19
 Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 35/196 (17%)

Query: 266 EAIGVKVQVGYGLTESSP--VIAARRPTCNVLGS---------VGHPINH-TEIKIVDAE 313
           E +G +V   YGLTE+     +   +P  + L +          G       E+ +VD E
Sbjct: 302 EELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVDPE 361

Query: 314 TNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS 371
           T + +P   K  G + +RG+ VM+GY+KNP AT++A    GW ++GD+  + P       
Sbjct: 362 TMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPD------ 414

Query: 372 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR---RPGAI 427
               G + ++ R+KD I++S GEN+  +E+E    +   + +  V+ + D++    P A 
Sbjct: 415 ----GYIEIKDRSKD-IIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAF 469

Query: 428 IVPDK-----EEVLMA 438
           +V        EE L+ 
Sbjct: 470 VVLKPGASVTEEELIE 485

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 89.3 bits (222), Expect = 4e-19
 Identities = 64/189 (33%), Positives = 92/189 (48%), Gaps = 18/189 (9%)

Query: 251 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 309
           VS G +LP  + + + EA G+++  G G TE   +  + RP     G+ G P+   E ++
Sbjct: 214 VSAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYEARL 273

Query: 310 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 369
           VD    EV PAG+ G + VRG  +  GY+  P  T++ L  DGWL TGD           
Sbjct: 274 VDESGREV-PAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RDGWLRTGDR---------- 321

Query: 370 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPG 425
            SR   G    +GRA D I +S G+ V PLE+E A      + +  V+   D+    R  
Sbjct: 322 FSRDADGWYRYQGRADDMIKVS-GQWVSPLEVEAALGEHPAVAEAAVVAVPDEDGLVRLK 380

Query: 426 AIIVPDKEE 434
           A +VP   E
Sbjct: 381 AFVVPRPGE 389

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 87.3 bits (217), Expect = 3e-18
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 42/173 (24%)

Query: 254 GGSLPMHIDL---FYEAIGVKVQVGYGLTES------SPVIAARRPTCNVLGSVGHPINH 304
            G+ P+ +++   F  A GV++  GYGLTE+      +P    RR      GSVG  + +
Sbjct: 340 CGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRI-----GSVGLRLPY 394

Query: 305 TEIKIV----------DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 354
             +++V          D   +EV      G++ + G  V  GY    +  K    EDGWL
Sbjct: 395 QRVRVVILDDAGRYLRDCAVDEV------GVLCIAGPNVFSGYL-EAAHNKGLWLEDGWL 447

Query: 355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 407
           NTGD+G I             G   L GRAKD I+   G N++P  +EEA LR
Sbjct: 448 NTGDLGRIDAD----------GYFWLTGRAKDLIIRG-GHNIDPAAIEEALLR 489

Length = 632

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 86.9 bits (215), Expect = 5e-18
 Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 15/162 (9%)

Query: 269 GVKVQVGYGLTESSPVIAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV 326
           G+ +   YGLTE+SP  A   P       GS+G PI  T+  I D +   VL  G  G +
Sbjct: 354 GLTLVEAYGLTETSPA-ACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGEL 411

Query: 327 KVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKD 386
            ++G QVM+GY+K P  T + +D DGWL+TGDI          R    G V +++ R KD
Sbjct: 412 CIKGPQVMKGYWKRPEETAKVMDADGWLHTGDI---------ARMDEQGFVYIVD-RKKD 461

Query: 387 TIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAII 428
            I++S G NV P E+E+       + ++  +G    + G I+
Sbjct: 462 MILVS-GFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIV 502

Length = 560

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 83.8 bits (207), Expect = 3e-17
 Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 21/162 (12%)

Query: 275 GYGLTES---SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 331
            YGLTE+     ++ A R     +GS G  + H EI+I D      LP   KG + +RG 
Sbjct: 296 AYGLTETCSGDTLMEAGREI-EKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGP 353

Query: 332 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 391
           +V +GY+K+P  T +A     W  +GD+G++             G L L  R KD I +S
Sbjct: 354 KVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEE----------GFLYLTDRKKDMI-IS 401

Query: 392 TGENVEPLELEEAALRSSLIRQIVVIG-QDQR---RPGAIIV 429
            GEN+   E+E        + +  VIG  D R   R  A++V
Sbjct: 402 GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVV 443

Length = 497

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 82.8 bits (205), Expect = 8e-17
 Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 20/171 (11%)

Query: 266 EAIGVKVQVGYGLTESSPV--IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 323
            A+G K+   +G+TE+  V       P      + G P+   E+++VDA+    LPAG  
Sbjct: 334 AALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAP-LPAGQI 392

Query: 324 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 383
           G ++VRG     GY K P       D DGW +TGD+  I             G + + GR
Sbjct: 393 GRLQVRGCSNFGGYLKRPQLN--GTDADGWFDTGDLARIDA----------DGYIRISGR 440

Query: 384 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVP 430
           +KD +++  GEN+  +E+E    R   I Q+ ++     R G    A +VP
Sbjct: 441 SKD-VIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVP 490

Length = 547

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 82.8 bits (205), Expect = 9e-17
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 12/132 (9%)

Query: 298 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 357
           VG P+  TE KI D ET E+LP G++G + VR   +++GY+  P AT +AL  DGWL+TG
Sbjct: 389 VGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTG 447

Query: 358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 417
           DIG I             G L   GR K+ + ++ G +V P E+E    +   +    V+
Sbjct: 448 DIGKIDEQ----------GFLHYLGRRKEMLKVN-GMSVFPSEVEALLGQHPAVLGSAVV 496

Query: 418 GQDQRRPGAIIV 429
           G+     G + V
Sbjct: 497 GRPDPDKGQVPV 508

Length = 567

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 82.4 bits (203), Expect = 1e-16
 Identities = 94/396 (23%), Positives = 158/396 (39%), Gaps = 120/396 (30%)

Query: 66  YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG--DKFLSMLPPWHVYERACGYFIFS 123
           YTSGTT +PKGV+++H+     + +L  I+  E G    +L  LP +H     C  + F+
Sbjct: 193 YTSGTTADPKGVVISHRGAY--LSTLSAIIGWEMGTCPVYLWTLPMFH-----CNGWTFT 245

Query: 124 RGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRI 183
            G     TA R       R+     ++ P +Y                 + +    +  +
Sbjct: 246 WG-----TAARGGTSVCMRH-----VTAPEIY-----------------KNIEMHNVTHM 278

Query: 184 SFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSA 243
               T F  + +G  L  + +                      P+H+L            
Sbjct: 279 CCVPTVFNILLKGNSLDLSPRSG--------------------PVHVL------------ 306

Query: 244 IGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS-PVI----------------- 285
                   +GG   P  +    + +G +V   YGLTE++ PV+                 
Sbjct: 307 --------TGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 286 -AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPS 342
               R   ++LG         ++ + + ET E +P   K  G + ++GS +M+GY KNP 
Sbjct: 359 ELKARQGVSILGL-------ADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPK 411

Query: 343 ATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 402
           AT +A  + GWLNTGD+G I P           G + ++ R+KD I++S GEN+  +E+E
Sbjct: 412 ATSEAF-KHGWLNTGDVGVIHPD----------GHVEIKDRSKD-IIISGGENISSVEVE 459

Query: 403 EAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE 434
               +   + +  V+          P A +V +K E
Sbjct: 460 NVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGE 495

Length = 579

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 82.2 bits (204), Expect = 2e-16
 Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 31/209 (14%)

Query: 253 GGGSLPMHI-----DLFYEAIGVKVQV--GYGLTESSPVIAARRPTCNVLGSVGHPINHT 305
            G +L   +      +     G ++++  G G+TE++P         +  G++G P    
Sbjct: 342 AGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGC 401

Query: 306 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAP 364
           E+K+V        P G K  V+V+G  V  GY++ P  T +A DE+G+  +GD   ++ P
Sbjct: 402 EVKLV--------PVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDP 453

Query: 365 HH-SRGRSRRCGGVLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQDQ 421
               RG        L+ +GR  +   LS+G   +V PL     +  + L++ +V+ G D+
Sbjct: 454 ADPERG--------LMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDR 505

Query: 422 RRPGAIIVPDKEEVLMAAKRLSIVHADAS 450
              G ++ P+    L A +RL+ + ADAS
Sbjct: 506 DEIGLLVFPN----LDACRRLAGLLADAS 530

Length = 614

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 81.6 bits (201), Expect = 2e-16
 Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 30/171 (17%)

Query: 269 GVKVQVGYGLTESSPV------------IAARRPTCNVLGSVGHPINHTEIKIVDAETNE 316
           GV+VQ  YGLTE S +            IA +        SVG  + + E+K +D +T  
Sbjct: 329 GVQVQEAYGLTEHSCITLTHGDPEKGHGIAKK-------NSVGFILPNLEVKFIDPDTGR 381

Query: 317 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 376
            LP  + G + VR   VMQGY+ N   T + +DEDGWL+TGDIG+I            G 
Sbjct: 382 SLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDD---------GD 432

Query: 377 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAI 427
           + +++ R K+ I    G  V P ELE   L    +    V+       G I
Sbjct: 433 IFIVD-RIKELIKYK-GFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEI 481

Length = 546

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 81.4 bits (201), Expect = 2e-16
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 31/180 (17%)

Query: 276 YGLTESSPVIAARRPTCNV--------LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 327
           +G TE SPV      TC +        LGSVG  I     ++VD   N+V P G  G + 
Sbjct: 323 FGQTEMSPV------TCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDV-PVGEVGEIV 375

Query: 328 VRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 387
            R   +M GY+ NP AT +A    GW ++GD+          R    G V V++ R KD 
Sbjct: 376 YRAPTLMSGYWNNPEATAEAFA-GGWFHSGDL---------VRQDEEGYVWVVD-RKKDM 424

Query: 388 IVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLS 443
           I+ S GEN+   E+E        I ++ VIG+   +    P A+     ++  +  + L+
Sbjct: 425 II-SGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLA 483

Length = 542

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 19/144 (13%)

Query: 306 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 365
            ++  D +   +LP G  G +++R   +M+GY  NP AT +AL +DG+  TGD+G     
Sbjct: 360 RVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLG----- 414

Query: 366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG---QDQR 422
           ++RG      G  V + R  D++ L  G  V P E+E A      +    V+G     + 
Sbjct: 415 YTRGD-----GQFVYQTRMGDSLRLG-GFLVNPAEIEHALEALPGVAAAQVVGATRDGKT 468

Query: 423 RPGAIIVPD-----KEEVLMAAKR 441
            P A ++P       E  LMAA R
Sbjct: 469 VPVAFVIPTDGASPDEAGLMAACR 492

Length = 540

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 22/136 (16%)

Query: 299 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 358
           G  +   EI+I + E    LP    G + VRG  +M GYF++  +    L  DGWL+TGD
Sbjct: 388 GKALPGHEIEIRN-EAGMPLPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTGD 445

Query: 359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA-----LRSSLIRQ 413
           +G++             G L + GRAKD I+++ G N+ P ++E  A     LRS     
Sbjct: 446 LGYLL-----------DGYLYITGRAKDLIIIN-GRNIWPQDIEWIAEQEPELRS---GD 490

Query: 414 IVVIGQDQRRPGAIIV 429
                  Q     I++
Sbjct: 491 AAAFSIAQENGEKIVL 506

Length = 579

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 79.6 bits (197), Expect = 7e-16
 Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 32/212 (15%)

Query: 253 GGGSLPMHI-----DLFYEAIGVKVQV--GYGLTESSPVI-AARRPTCNVLGSVGHPINH 304
            G +LP  +      L     G ++ +  G G TE++P       PT    G +G P   
Sbjct: 297 AGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTDRS-GVIGLPAPG 355

Query: 305 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA- 363
           TE+K+V        P G K  V+V+G  V  GY+++P  T +A DE+G+   GD      
Sbjct: 356 TELKLV--------PNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRFVD 407

Query: 364 PHH-SRGRSRRCGGVLVLEGRAKDTIVLSTGE--NVEPLELEEAALRSSLIRQIVVIGQD 420
           P    RG        LV +GR  +   L++G   +V  L +   A  + L++  VV G D
Sbjct: 408 PDDPERG--------LVFDGRVAEDFKLASGTWVSVGALRVALVAALAPLVQDAVVAGHD 459

Query: 421 QRRPGAIIVPDKEEVLMAAKRLSIVHADASEL 452
           +   G ++ P+   +    +   +  A A ++
Sbjct: 460 RDEIGLLVFPN---LAACRRLAGLAEASAEDV 488

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 79.7 bits (197), Expect = 8e-16
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 23/151 (15%)

Query: 295 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 354
           L ++G P+   E+++VD +   VLP    G++++RG  V  GY         A D DGWL
Sbjct: 359 LATLGPPLPGLEVRVVDEDGQ-VLPPRGVGVIELRGESVTPGYL-TMDGFIPAQDADGWL 416

Query: 355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ- 413
           +TGD+G++             G +V+ GR KD I+++ G N+ P ++E AA R   +R  
Sbjct: 417 DTGDLGYLTE----------EGEVVVCGRVKDVIIMA-GRNIYPTDIERAAARVEGVRPG 465

Query: 414 -IVVIGQD--QRRPG-AIIV-----PDKEEV 435
             V +  D    R G A+ V      D  EV
Sbjct: 466 NAVAVRLDAGHSREGFAVAVESNAFEDPAEV 496

Length = 545

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 57/202 (28%), Positives = 85/202 (42%), Gaps = 35/202 (17%)

Query: 251 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 309
           VS G  L P  ID +  A G+ ++ GYG TE+  ++A         GS+G P     + I
Sbjct: 203 VSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAI 262

Query: 310 VDAETNEVLPAGSKGIVKVRGSQ----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 365
           +D E NE LP G +G + VR       + +GY K+P  T+  +    W  TGD       
Sbjct: 263 IDDEGNE-LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRAI---- 316

Query: 366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 425
                 +   G     GRA D ++ S+G  + P E+E A +    + +  V+G       
Sbjct: 317 ------KDEDGYFWFVGRADD-VIKSSGYRIGPFEVESALIEHPAVAEAAVVG------- 362

Query: 426 AIIVPDKEEVLMAAKRLSIVHA 447
               PD         R  +V A
Sbjct: 363 ---SPDPV-------RGEVVKA 374

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 78.3 bits (194), Expect = 2e-15
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 10/120 (8%)

Query: 49  KHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSM 106
                  +  DD+A   YT GTTG PKG MLTH+NL+  ++ +   V    E  D+FL+ 
Sbjct: 115 PLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGEDRFLTA 174

Query: 107 LPPWHVYERACG--YFIFSRGIELMYTAVR--NLKDDLQRYQPHYMISVPLVYETLYSGI 162
           LP +H++         +      ++    R  N+  +++RY+      VP    TLY+ +
Sbjct: 175 LPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVP----TLYNAL 230

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 49/137 (35%), Positives = 65/137 (47%), Gaps = 23/137 (16%)

Query: 295 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL 354
           +G+ G      E++I D E  E LP G  G + V G  V  GY+ NP A  +A   DGW 
Sbjct: 339 IGTCGFERTGMEVQIQDDEGRE-LPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWF 396

Query: 355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 414
            TGD+G     H   R     G L + GRA D + +S G NV P E+EE  L    + ++
Sbjct: 397 RTGDLG-----HLDAR-----GFLYITGRASD-MYISGGSNVYPREIEEKLLTHPAVSEV 445

Query: 415 VVIGQDQRRPGAIIVPD 431
            V+G          VPD
Sbjct: 446 AVLG----------VPD 452

Length = 528

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 34/221 (15%)

Query: 264 FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSK 323
           FY A+GV +   YG TE+     A RP     GS G P+    ++ VD E N V P   +
Sbjct: 310 FYSALGVWILDIYGQTETGMGFIAGRPPV-KNGSSGLPLPGYAVRRVDDEGNPVPPGVGE 368

Query: 324 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 383
            +V++    +   Y+ +P   K+A     +  TGD                 G   L GR
Sbjct: 369 LVVRLPWPGMALTYWNDPERYKEAYFGRWYR-TGDWAERDED----------GYFWLHGR 417

Query: 384 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS 443
           + D I +S G+ + PLE+E   L    + +  V+G           P K ++++A   L+
Sbjct: 418 SDDVIKVS-GKRIGPLEIESVLLAHPAVAEAAVVGVPD--------PGKGQIVLAFVVLA 468

Query: 444 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDE 484
               + +EL++         E+R+  ++    IGP  +  +
Sbjct: 469 -AGVEPNELAE---------EIRRHVAR---NIGPHAIPRK 496

Length = 528

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 78.0 bits (193), Expect = 3e-15
 Identities = 40/154 (25%), Positives = 64/154 (41%), Gaps = 20/154 (12%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE-RA 116
            DD A  ++TSG+ G PKGV+L+H+NLL  I  +  ++     D  L  LP +H +    
Sbjct: 144 PDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHAFGLTV 203

Query: 117 CGYFIFSRGIELMY----TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQI----FT 168
                   G+ ++Y       + + + ++ Y+   +   P    T   G  +      F+
Sbjct: 204 TLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTP----TFLRGYARNAHPEDFS 259

Query: 169 SSAARRVVA-----RALIRISFAYTAFKRIYEGF 197
           S   R VVA         R  F      RI EG+
Sbjct: 260 S--LRLVVAGAEKLPEATRELFEEKFGIRILEGY 291

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 77.7 bits (192), Expect = 3e-15
 Identities = 60/188 (31%), Positives = 79/188 (42%), Gaps = 36/188 (19%)

Query: 255 GSLPMHIDLFYEAIG----VKVQVGYGLTESSPVIAARRP------TCNVLGSVGHPINH 304
           G+ PM      EAI     +  Q  YG TE+  VI   R           L S G P   
Sbjct: 289 GASPMSPVRLAEAIERFGPIFAQY-YGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG 347

Query: 305 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 364
             + ++D +  EV   G  G + VRG  VM GY+  P  T +A   DGWL+TGD+     
Sbjct: 348 LRVALLDEDGREV-AQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDV----- 400

Query: 365 HHSRGRSRR-CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 423
                 +R    G   +  R KD IV + G NV P E+E+       + Q+ VIG     
Sbjct: 401 ------AREDEDGFYYIVDRKKDMIV-TGGFNVFPREVEDVLAEHPAVAQVAVIG----- 448

Query: 424 PGAIIVPD 431
                VPD
Sbjct: 449 -----VPD 451

Length = 524

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 77.3 bits (191), Expect = 4e-15
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 28/157 (17%)

Query: 266 EAIGVKVQVGYGLTES---SPVIA----------ARRPTCNVLGSVGHPINHTEIKIVDA 312
           E IG  +   YGLTE+   + V A            R        V +P+    + ++D 
Sbjct: 317 EEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPL-QEGVTVLDP 375

Query: 313 ETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 370
           +T + +PA  +  G +  RG+ VM+GY KNP AT++A    GW +TGD+  + P      
Sbjct: 376 DTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPD----- 429

Query: 371 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 407
                G + ++ R+KD I++S GEN+  +E+E+   R
Sbjct: 430 -----GYIKIKDRSKD-IIISGGENISSIEVEDVLYR 460

Length = 545

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 76.8 bits (189), Expect = 6e-15
 Identities = 63/204 (30%), Positives = 87/204 (42%), Gaps = 46/204 (22%)

Query: 253 GGGSLPMHIDLFYEAIGV----KVQVGYGLTES----------SPVIAARRPTCNVLGS- 297
           GGGSL     L  +A  +    K+   YG+TE+           P + + + T   +   
Sbjct: 296 GGGSLSS--RLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQT 353

Query: 298 ------------VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK 345
                       VG P  H E+KI   E++ V      G +  RG  VM GY+   S T 
Sbjct: 354 KSSSVHQPQGVCVGKPAPHVELKIGLDESSRV------GRILTRGPHVMLGYWGQNSETA 407

Query: 346 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 405
             L  DGWL+TGDIGWI             G L L GR+ D I  + GENV P E+E   
Sbjct: 408 SVLSNDGWLDTGDIGWIDK----------AGNLWLIGRSNDRIK-TGGENVYPEEVEAVL 456

Query: 406 LRSSLIRQIVVIGQDQRRPGAIIV 429
            +   +  +VV+G    R   ++V
Sbjct: 457 SQHPGVASVVVVGVPDSRLTEMVV 480

Length = 563

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 62/189 (32%), Positives = 83/189 (43%), Gaps = 41/189 (21%)

Query: 266 EAIGVKVQVGYGLTESSPVIAARRPTCNVL-----GSVGHPINHTEIKIVDAETNEVLPA 320
           + +G+ V   YG TE++ V+      C  L     GS+G P+   E+ +VD     V P 
Sbjct: 229 DELGLTVNEFYGQTEANLVVG----NCAALGPARPGSMGKPVPGHEVAVVDDAGRPVPP- 283

Query: 321 GSKGIVKV-RGSQVM-QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL 378
           G  G + V R   VM  GY+ NP AT  A     WL TGD+G           R   G L
Sbjct: 284 GEVGEIAVKRPDPVMFLGYWNNPEATA-AKFAGDWLLTGDLG----------RRDADGYL 332

Query: 379 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA 438
             +GRA D I  S+G  + P E+EE  L+   + +  V+G          VPD E     
Sbjct: 333 WFKGRADDVIK-SSGYRIGPAEIEECLLKHPAVLEAAVVG----------VPDPE----- 376

Query: 439 AKRLSIVHA 447
             R  IV A
Sbjct: 377 --RGEIVKA 383

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 32/193 (16%)

Query: 276 YGLTESSPVI-------AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 328
           YG TE +P+          RRP     GS G P+ + E ++VD + N+V   G  G +  
Sbjct: 319 YGQTEIAPLATVLGPEEHLRRP-----GSAGRPVLNVETRVVDDDGNDV-APGEVGEIVH 372

Query: 329 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI 388
           R  Q+M GY+ +P  T +A    GW ++GD+G +             G + +  R KD I
Sbjct: 373 RSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEE----------GYITVVDRKKDMI 421

Query: 389 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSI 444
             + GENV   E+EEA      + ++ VIG    +      A++VP K    +    L I
Sbjct: 422 K-TGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVP-KAGATVTEDEL-I 478

Query: 445 VHADASELSKEKT 457
            H  A  L+  K 
Sbjct: 479 AHCRAR-LAGFKV 490

Length = 523

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 24/176 (13%)

Query: 251 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR-----RPTCNVLGSVGHPINH 304
           VSG  +LP+ + D      G +    YG+TE+   ++ R     RP     G VG P+  
Sbjct: 247 VSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRP-----GWVGLPLAG 301

Query: 305 TEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
            E ++VD E    +P    + G ++VRG  +  GY   P AT  A   DGW  TGD+  +
Sbjct: 302 VETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVV 360

Query: 363 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 418
            P           G+  + GR    ++ S G  +   E+E A L    +R+  V+G
Sbjct: 361 DP----------DGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVG 406

Length = 471

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 63/193 (32%), Positives = 88/193 (45%), Gaps = 40/193 (20%)

Query: 262 DLFYEAIGVKVQVGYGLTES-------SPVIAARRPTCNVLGSVGHPINHTEIKIVDAET 314
           D F E  GV++   YG+TE+        P    R P      S+G P    E +I D + 
Sbjct: 305 DAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWP------SIGRPGFCYEAEIRD-DH 357

Query: 315 NEVLPAGSKG---IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR- 370
           N  LPAG  G   I  V G  + + Y+ +P AT + L+ DGWL+TGD G++      G  
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYV---DEEGFF 414

Query: 371 ---SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRRPGA 426
               RRC             ++   GENV  +ELE        I+ IVV+G +D  R  A
Sbjct: 415 YFVDRRC------------NMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEA 462

Query: 427 I---IVPDKEEVL 436
           I   +V ++ E L
Sbjct: 463 IKAFVVLNEGETL 475

Length = 517

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 75.4 bits (185), Expect = 2e-14
 Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 26/181 (14%)

Query: 252 SGGGSLPMHIDLFYE-AIGVKVQVGYGLTE------SSPVIAARRPTCNVLGSVGHPINH 304
           SGG  LP+ +  F+E   G+K++ G+G+TE        P     +P     GS+G  +  
Sbjct: 319 SGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKP-----GSIGLMLPG 373

Query: 305 TEIKIVDAE-TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 363
            E+ +V  +   +VLP G  G +++RG  V +GY+  P  + +A   D +L TGDIG++ 
Sbjct: 374 IELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFL-TGDIGYMD 432

Query: 364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR 422
                       G   L  R KD I+ S G NV P  +E+A      +++++VIG  DQ 
Sbjct: 433 TD----------GYFFLVDRKKDMII-SGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQY 481

Query: 423 R 423
           R
Sbjct: 482 R 482

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 74.9 bits (185), Expect = 2e-14
 Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 39/171 (22%)

Query: 266 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 325
           E  G++   GYGLTE +  + A+R   + L  VG P+   E+K+VD    E+        
Sbjct: 261 EQQGIRCWCGYGLTEMASTVCAKR--ADGLAGVGSPLPGREVKLVD---GEIW------- 308

Query: 326 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHHSRGRSRRCGGVLVLEGRA 384
             +RG+ +  GY++        ++++GW  T D G W              G L + GR 
Sbjct: 309 --LRGASLALGYWRQ-GQLVPLVNDEGWFATRDRGEWQ------------NGELTILGRL 353

Query: 385 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVI-------GQDQRRPGAII 428
            D +  S GE ++P E+E    +  L++Q+ V+       GQ   RP A++
Sbjct: 354 -DNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQ---RPVAVV 400

Length = 458

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 15/126 (11%)

Query: 298 VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED---GWL 354
           +G+P       I+D +   V P G +G + + G QV  GY  NP  T +A  +D    W 
Sbjct: 274 IGYPKPGLRALILDEDGRPV-PPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWY 332

Query: 355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 414
            TGD+ ++             G+LV  GR    I L  G  +E  E+E A      + + 
Sbjct: 333 RTGDLVYLED----------DGLLVYLGRKDFQIKLH-GYRIELEEIEAALRALPGVEEA 381

Query: 415 VVIGQD 420
           VV+   
Sbjct: 382 VVLPVP 387

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 74.2 bits (182), Expect = 4e-14
 Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 20/171 (11%)

Query: 266 EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIVDAETNEVLPAGSK 323
           E +G  +   +G+TE+  V            S   G P+   E+K++DA     L  G  
Sbjct: 332 ELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDAN-GAKLSQGET 390

Query: 324 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 383
           G + VRG     GY K P     + D +GW +TGD+ +              G + + GR
Sbjct: 391 GRLLVRGCSNFGGYLKRPHL--NSTDAEGWFDTGDLAFQDAE----------GYIRINGR 438

Query: 384 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVP 430
           +KD +++  GEN+  +E+E    +   + Q+ ++     R G    A++VP
Sbjct: 439 SKD-VIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVP 488

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 74.2 bits (183), Expect = 5e-14
 Identities = 63/200 (31%), Positives = 90/200 (45%), Gaps = 28/200 (14%)

Query: 247 SKAGVSGGG-SLPMHI-DLFYEAIGVKVQVGYGLTES-SPVIA--ARRPTCNVLGSVGHP 301
           S   + GGG ++P  + +   E  G+    GYGLTE+ +   +    RP    LG    P
Sbjct: 306 SLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGI---P 362

Query: 302 INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGD 358
               + +++D ET E LP G  G + V G QV +GY+  P AT +A  E DG  +  TGD
Sbjct: 363 TFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGD 422

Query: 359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 418
           +G +             G   +  R K  I  S G  V P E+E    +   I++  VI 
Sbjct: 423 LGRMDEE----------GYFFITDRLKRMINAS-GFKVWPAEVENLLYKHPAIQEACVIA 471

Query: 419 -QDQRRPG----AIIVPDKE 433
             D RR G    A++V   E
Sbjct: 472 TPDPRR-GETVKAVVVLRPE 490

Length = 546

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 63/209 (30%), Positives = 99/209 (47%), Gaps = 38/209 (18%)

Query: 251 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV--IAARRP---------TCNVLGSVG 299
           V GG ++P  +   +E +GV+V+  +G+TE SP+  +AA +P           +VL   G
Sbjct: 300 VCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQG 359

Query: 300 HPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 357
           +P    E+KI D    E LP   K  G +KVRG  V   Y++      + LD+DG+ +TG
Sbjct: 360 YPPFGVEMKITDDAGKE-LPWDGKTFGRLKVRGPAVAAAYYR---VDGEILDDDGFFDTG 415

Query: 358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 417
           D+  I  +          G + +  R+KD I  S GE +  ++LE  A+    + +  VI
Sbjct: 416 DVATIDAY----------GYMRITDRSKDVIK-SGGEWISSIDLENLAVGHPKVAEAAVI 464

Query: 418 GQDQ----RRPGAIIV------PDKEEVL 436
           G        RP  I+         +EE+L
Sbjct: 465 GVYHPKWDERPLLIVQLKPGETATREEIL 493

Length = 542

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 73.0 bits (180), Expect = 2e-13
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 55  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 111
           T   DD AT +++SG+ G PKGVML+H N+L  I  + D+    N D  LS LP +H
Sbjct: 778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFH 834

Length = 1146

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 37/204 (18%)

Query: 275 GYGLTESSPVIAARRPTCNVL---GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 331
           GYG+TES+ V   R      L    SVG    + + K+VD  T  +LP G+ G + ++G 
Sbjct: 351 GYGMTESTAV-GTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGP 409

Query: 332 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 391
            VM+GY  NP AT+  +D+DGWL TGDI +              G L +  R K+ I+  
Sbjct: 410 GVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDED----------GYLYIVDRLKE-IIKY 458

Query: 392 TGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAAKRLSIVHADA 449
            G  + P +LE   +    I    V            VPDKE  E+ +A     +V    
Sbjct: 459 KGFQIAPADLEAVLISHPEIIDAAVTA----------VPDKECGEIPVAF----VVRRQG 504

Query: 450 SELSKEKTISLL------YGELRK 467
           S LS+E  I+ +      Y ++RK
Sbjct: 505 STLSQEAVINYVAKQVAPYKKVRK 528

Length = 560

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 40/211 (18%), Positives = 72/211 (34%), Gaps = 39/211 (18%)

Query: 11  KSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGT 70
              +     ++    + + +   G                     +  DD+A  +YTSGT
Sbjct: 135 LVVLLVGDADDRLPITLEALAAEGPGPDADARP------------VDPDDLAFLLYTSGT 182

Query: 71  TGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYERACGYFIFSRGIEL 128
           TG PKGV+LTH+NLL     +   +       D  LS LP +H++       + +  +  
Sbjct: 183 TGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIF--GLIVGLLA-PLLG 239

Query: 129 MYTAV---------RNLKDDLQRYQPHYMISVPLVY----------ETLYSGIQKQIFTS 169
             T V           +   +++Y+   +  VP             +   S   + + + 
Sbjct: 240 GGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSG 299

Query: 170 SAARRVVARALIRISFAYTAFKRIYEGFCLT 200
            A    +   L+           I EG+ LT
Sbjct: 300 GAP---LPPELLERFEERFGPIAILEGYGLT 327

Length = 534

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 40/174 (22%)

Query: 276 YGLTESSPVIAARRPTCNVL---------------GSVGHPINHTEIKIVDAETNEVLPA 320
           YGL ES+  +    P   +                  +G+PI   E++I  +  +     
Sbjct: 310 YGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRI--SPGDGAAGV 367

Query: 321 GSKGI--VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL 378
             + I  +++RG+ +M GY          +D D W  TGD+G++             G L
Sbjct: 368 AGREIGEIEIRGASMMSGYLGQAP-----IDPDDWFPTGDLGYLV-----------DGGL 411

Query: 379 VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ--IVVIGQDQR--RPGAII 428
           V+ GRAK+ I ++ G N+ P E+E  A +   +R+  +V +G  +   RPG +I
Sbjct: 412 VVCGRAKELITVA-GRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVI 464

Length = 525

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 70.3 bits (173), Expect = 7e-13
 Identities = 26/56 (46%), Positives = 34/56 (60%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 111
              DDIA   YTSG+TG PKGVM+TH NLL  +R++      +  D  +S LP +H
Sbjct: 145 PDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 69.8 bits (172), Expect = 1e-12
 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 41/197 (20%)

Query: 2   RFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDI 61
           R +I+         P       V  Y+E++               A   + +  I  +D 
Sbjct: 128 RTVIVE-----GDGPAAPLAPEVGEYEELLA-------------AASDTFDFPDIDENDA 169

Query: 62  ATYVYTSGTTGNPKGVMLTHKNL-LH--QIRSLYDIVPAENGDKFLSMLPPWHVYERACG 118
           A  +YTSGTTG+PKGV+L+H+NL LH   + +   +      D +L ++P +HV+     
Sbjct: 170 AAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSR---DDVYLVIVPMFHVHAWGLP 226

Query: 119 YFIFSRGIELMYTA---VRNLKDDLQRYQPHYMISVPLVYETL----------YSGIQKQ 165
           Y     G + +        NL D ++  +  +  +VP +++ L          +S ++  
Sbjct: 227 YLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLV 286

Query: 166 IFTSSAARRVVARALIR 182
           I+  +A    +  AL+R
Sbjct: 287 IYGGAA----LPPALLR 299

Length = 521

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%)

Query: 294 VLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 352
           ++ + G P++   E+++VDA+ N V P G  G +  RG   ++GY++ P    +A D DG
Sbjct: 356 IIHTQGRPLSPDDEVRVVDADGNPVAP-GEVGELLTRGPYTIRGYYRAPEHNARAFDADG 414

Query: 353 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 412
           +  +GD+            R   G LV+EGR KD I    GE +   E+E   LR   + 
Sbjct: 415 FYRSGDL----------VRRDPDGYLVVEGRVKDQIN-RGGEKIAAEEVENLLLRHPAVH 463

Query: 413 QIVVIG-QDQ---RRPGAIIVPDKEEVLMAAK 440
              ++   D+    +  A IV  KE  L AA+
Sbjct: 464 DAALVAMPDELLGEKSCAFIVV-KEPPLRAAQ 494

Length = 542

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 63/195 (32%), Positives = 90/195 (46%), Gaps = 25/195 (12%)

Query: 269 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD--AETNEVLPAGSKG-I 325
           G KV + YG TE+   +  R P     G+   P   +E++IV      +E LP G +G +
Sbjct: 295 GEKVNI-YGTTEAMNSLYMRDPRT---GTEMRPGFFSEVRIVRIGGSPDEALPNGEEGEL 350

Query: 326 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 385
           V         GY   P AT + L +DGW  T D+  + P           G + + GR  
Sbjct: 351 VVAAADATFTGYLNQPQATAEKL-QDGWYRTSDVAVVDPS----------GTVRILGRVD 399

Query: 386 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKR 441
           D I+ S GEN+ P E+E    R+  + ++VVIG    R G    A +VP + E L +A  
Sbjct: 400 DMII-SGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQSVTACVVPREGETL-SADA 457

Query: 442 LSIVHADASELSKEK 456
           L      ASEL+  K
Sbjct: 458 LDTF-CRASELADFK 471

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 67.5 bits (166), Expect = 3e-12
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 113
           DD A   YTSGTTG PKG MLTH+N+L+   S+   +    GD+ L  +P +HV+
Sbjct: 2   DDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVF 56

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 68.0 bits (167), Expect = 3e-12
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 9/148 (6%)

Query: 14  VAPDIVEEIPVFSYDEIIDLGR-ESRKAFSDSNDARKHYKYET--IGSDDIATYVYTSGT 70
              ++ E++   + + ++ L   +   A  D        +     I  DD+A   Y+SGT
Sbjct: 110 TTSELAEKLASLALEPVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGT 169

Query: 71  TGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERA-CGYFIFSRGIE 127
           TG  KGVMLTH+NL+  +  L        +  D  L +LP +H+Y        +   G  
Sbjct: 170 TGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGAT 229

Query: 128 LMYTAVRNLKDDL---QRYQPHYMISVP 152
           ++     +L+  L   ++Y+  ++  VP
Sbjct: 230 VVVMPRFDLEKFLAAIEKYKVTHLPVVP 257

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 36/187 (19%)

Query: 276 YGLTESSPVIAARRPTCNVLG--SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV 333
           YG+TE++  IA  +P   + G  S G  + H +I I          A   G + ++   +
Sbjct: 261 YGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------ANQTGNITIQAQSL 311

Query: 334 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG 393
             GY+  P    Q LD  G   T D+G++               L + GR    I ++ G
Sbjct: 312 ALGYY--P----QILDSQGIFETDDLGYLDAQGY----------LHILGRNSQKI-ITGG 354

Query: 394 ENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSIVHADA 449
           ENV P E+E A L + L++ + V+G      G    AI VP    +        +  A  
Sbjct: 355 ENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI----SLEELKTAIK 410

Query: 450 SELSKEK 456
            +LS  K
Sbjct: 411 DQLSPFK 417

Length = 452

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 18/185 (9%)

Query: 251 VSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 309
           VS G +LP  I   + E  G+++  G G TE   +  + RP     G+ G P+   E+K+
Sbjct: 284 VSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGAVKYGTSGKPVPGYEVKL 343

Query: 310 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG 369
           VD +  EV   G  G + VRG     GY+     T++      W  TGD           
Sbjct: 344 VDEDGEEV-ADGEIGELWVRGDSSAAGYWNRREKTRETF-VGEWTRTGD----------K 391

Query: 370 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPG 425
             R   G     GR+ D + +S G  V P E+E+A L+   + +  V+G +      +P 
Sbjct: 392 YYRDEDGYYWYCGRSDDMLKVS-GIWVSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPK 450

Query: 426 AIIVP 430
           A +V 
Sbjct: 451 AFVVL 455

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 67.6 bits (165), Expect = 6e-12
 Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 14/119 (11%)

Query: 309 IVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 366
           +VD +T + +PA  K  G + +RG+ VM+GY KNP A ++A   +GW ++GD+G   P  
Sbjct: 386 VVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPD- 443

Query: 367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 425
                    G + ++ R+KD I++S GEN+  LE+E        + +  V+ +   R G
Sbjct: 444 ---------GYIEIKDRSKD-IIISGGENISSLEVENVVYTHPAVLEASVVARPDERWG 492

Length = 567

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 67.1 bits (164), Expect = 8e-12
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 22/116 (18%)

Query: 275 GYGLTESSPVIA------ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV 328
           GYG TE SPVI        +  +C     VG PI   ++ IV  ET   + +G  G+V  
Sbjct: 331 GYGTTECSPVITINTVNSPKHESC-----VGMPIRGMDVLIVSEETKVPVSSGETGLVLT 385

Query: 329 RGSQVMQGYFKN-PSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 383
           RG+ +  GY           L  + W  TGD+G++  H          G L L+GR
Sbjct: 386 RGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRH----------GELFLKGR 431

Length = 539

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 26/53 (49%), Positives = 30/53 (56%)

Query: 60  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 112
           D A  +YTSGTTG PKGV+LTH NL    R+L +       D  L  LP  HV
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASDVLLHALPLHHV 141

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 60  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG- 118
           D A  +YTSGTTG PKGV+L+H+NLL   ++L   +    GD  LS+LP +HV     G 
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60

Query: 119 YFIFSRGIEL-MYTAVRNLKD---DLQRYQPHYMISVPLVYETL 158
                 G  + +Y            +++Y+   +  VP +Y+ L
Sbjct: 61  LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL 104

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 55  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 113
            +  DD+A  ++TSGTTG PKG MLTH+ LL       + +    GD++L+  P +HV+
Sbjct: 162 EVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVF 220

Length = 513

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 3/58 (5%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVY 113
           DD A  +Y+SGTTG PKGVML+HKN+   L Q++      P  + D  L+ LP +H Y
Sbjct: 146 DDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAY 203

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 35/172 (20%)

Query: 276 YGLTESSPVI------AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 329
           YG TES  V       A   P     G+VG      E++ VD +    LP G  G +  R
Sbjct: 303 YGSTESGAVTFATSEDALSHP-----GTVGKAAPGAELRFVDEDGRP-LPQGEIGEIYSR 356

Query: 330 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 389
            +      + N    +  +D  G++ +GD+G++             G L L  R +D +V
Sbjct: 357 IAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDAD----------GYLFLCDRKRD-MV 405

Query: 390 LSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE--EVLMAA 439
           +S G N+ P E+E        +    V G          +PD E  E LMA 
Sbjct: 406 ISGGVNIYPAEIEAVLHAVPGVHDCAVFG----------IPDAEFGEALMAV 447

Length = 509

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 57/188 (30%), Positives = 79/188 (42%), Gaps = 43/188 (22%)

Query: 276 YGLTE-SSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 329
           YG TE +   IA     A  P       VG P     +KI+D   NEV P G  G + V 
Sbjct: 355 YGSTEVAFATIATPEDLAEAPGT-----VGRPPKGVTVKILDENGNEV-PRGVVGRIFVG 408

Query: 330 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 389
                +GY       KQ    DG L++GD+G+              G+L ++GR  D IV
Sbjct: 409 NGFPFEGY--TDGRDKQI--IDGLLSSGDVGYFDED----------GLLFVDGRDDDMIV 454

Query: 390 LSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLS--IVHA 447
            S GENV P E+E+       + +  VIG          V D+E      +RL   +V A
Sbjct: 455 -SGGENVFPAEVEDLLAGHPDVVEAAVIG----------VDDEE----FGQRLRAFVVKA 499

Query: 448 DASELSKE 455
             + L ++
Sbjct: 500 PGAALDED 507

Length = 549

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 65.3 bits (160), Expect = 3e-11
 Identities = 53/195 (27%), Positives = 78/195 (40%), Gaps = 37/195 (18%)

Query: 275 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 334
           G G+T  +       P     GSVG  +   E++I+D + NE LP G  G V        
Sbjct: 299 GGGVTVITSEDWLAHP-----GSVGKAV-LGEVRILDEDGNE-LPPGEIGTVYFEMDGYP 351

Query: 335 QGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE 394
             Y  +P  T  A +  GW+  GD+G++             G L L  R  D I+ S G 
Sbjct: 352 FEYHNDPEKTAAARNPHGWVTVGDVGYLDED----------GYLYLTDRKSDMII-SGGV 400

Query: 395 NVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVH-ADASELS 453
           N+ P E+E   +    +  + V G          VPD+E   M  +  ++V  AD ++  
Sbjct: 401 NIYPQEIENLLVTHPKVADVAVFG----------VPDEE---MGERVKAVVQPADGADAG 447

Query: 454 KEKTISLLYGELRKW 468
                  L  EL  W
Sbjct: 448 DA-----LAAELIAW 457

Length = 502

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 24/149 (16%)

Query: 276 YGLTESSPVIA------ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 329
           YG +E S V A       RRP      SVG P ++ +++I +    EV   G  G V V+
Sbjct: 286 YGASELSFVTALVDEESERRPN-----SVGRPFHNVQVRICNEAGEEVQK-GEIGTVYVK 339

Query: 330 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 389
             Q   GY        + L+ DGW+   D+G+              G + + GR K+ I+
Sbjct: 340 SPQFFMGY-IIGGVLARELNADGWMTVRDVGYEDEE----------GFIYIVGREKNMIL 388

Query: 390 LSTGENVEPLELEEAALRSSLIRQIVVIG 418
              G N+ P E+E        + +IVVIG
Sbjct: 389 FG-GINIFPEEIESVLHEHPAVDEIVVIG 416

Length = 487

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 26/185 (14%)

Query: 251 VSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPV-IAAR----RPTCNVLGSVGHPINH 304
           VS G +LP  +   +YE  G+K+  G G TE   + I+A     +P     G+ G P+  
Sbjct: 267 VSAGETLPAKVWQDWYERTGLKIIDGIGATEMLHIFISANEENAKP-----GATGKPVPG 321

Query: 305 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 364
            E +IVD + NEV P G  G + VRG    + Y  +    +Q    DGW  TGDI     
Sbjct: 322 YEARIVDDQGNEV-PRGEAGRLAVRGPTGCR-YLDDER--QQEYVRDGWNVTGDIFRQDE 377

Query: 365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 424
                      G      R+ D IV S G N+   E+E+A L    + +  VIG      
Sbjct: 378 D----------GYFHYVARSDDMIV-SAGYNIAAPEVEDALLTHPDVAECAVIGVPDEER 426

Query: 425 GAIIV 429
           G I+ 
Sbjct: 427 GQIVC 431

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 64.0 bits (156), Expect = 8e-11
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 17/142 (11%)

Query: 299 GHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 357
           G P++   E+++VD   N V P G  G++  RG    +GY+K P     A D +G+  TG
Sbjct: 354 GRPMSPDDEVRVVDDHGNPVAP-GETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTG 412

Query: 358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVV 416
           D+  + P           G +V+ GRAKD I    GE +   E+E   L   ++    +V
Sbjct: 413 DLVRLTPE----------GYIVVVGRAKDQIN-RGGEKIAAEEIENLLLAHPAVHDAALV 461

Query: 417 IGQDQ---RRPGAIIVPDKEEV 435
              D+    +  A IV     +
Sbjct: 462 SMPDELLGEKSCAFIVVRDPAL 483

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 64.0 bits (156), Expect = 8e-11
 Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 18/162 (11%)

Query: 248 KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEI 307
           +  +  G    +H   F E  GV +  GYG TE++ VIA    +    GS+G      E 
Sbjct: 297 RVALGPGVPAALHAA-FRERFGVDLLDGYGSTETNFVIAVTHGSQRP-GSMGRLAPGFEA 354

Query: 308 KIVDAETNEVLPAGSKGIVKVRGSQ---VMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 364
           ++VD    E LP G  G + +R  +      GYF  P  T +A   + W +TGD      
Sbjct: 355 RVVDEHDQE-LPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRV---- 408

Query: 365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL 406
                  R   G      R KD I    GEN+   E+E+  L
Sbjct: 409 ------VRDADGWFRFVDRIKDAI-RRRGENISSFEVEQVLL 443

Length = 542

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 18/151 (11%)

Query: 262 DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAG 321
           + F E  G+K+  G+G TE++  IA         GS+G P    +I I+D +       G
Sbjct: 319 NTFKEKTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSC-EVG 377

Query: 322 SKGIVKVRGSQ-----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 376
            +G + +R S      +  GY+++P  T +    DG+ +TGD  W              G
Sbjct: 378 EEGEIVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHTGDTAW----------MDEDG 426

Query: 377 VLVLEGRAKDTIVLSTGENVEPLELEEAALR 407
            L   GRA D ++ S+G  + P E+E A ++
Sbjct: 427 YLWFVGRADD-LIKSSGYRIGPFEVESALIQ 456

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 26/54 (48%), Positives = 35/54 (64%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 111
            DDIA   ++SG+TG PKGV+LTHKNLL  I ++ +     + D FLS +P  H
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAAEITSEDVFLSWMPLTH 158

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 41/240 (17%)

Query: 251 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 309
           VS G  L P  I+   +A G+ ++ GYG TE++ +I          GS+G P+    + +
Sbjct: 205 VSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTAMIGNSPGQKVKPGSMGRPLPGYRVVL 264

Query: 310 VDAETNEVLPAGSKGIVKV--RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS 367
           +D E  E+     +  + +  R   +M GY  +P  T  A    G+  TGD         
Sbjct: 265 LDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFR-GGYYRTGDKA------- 316

Query: 368 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR--- 423
               R   G L   GRA D +  S+   + P E+E A L    + +  V+   D  R   
Sbjct: 317 ---YRDEDGYLWFVGRADD-VFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAV 372

Query: 424 PGAIIV------PDKE----------EVLMAAKRLSIVHADASELSKEKTISLLYGELRK 467
           P A IV      P +E          E L   KR+  +     EL   KTIS   G++R+
Sbjct: 373 PKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRI-EFVGELP--KTIS---GKIRR 426

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 20/139 (14%)

Query: 299 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 358
           G P   TEI+I+D +  E +P G  G + VR      GY     +TK     DG++ +GD
Sbjct: 368 GRPAEGTEIRILDQDFRE-VPTGEVGTIFVRNDTQFDGY--TSGSTKDF--HDGFMASGD 422

Query: 359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 418
           +G++      GR       L + GR  + IV S GENV P+E+E+       + +  VIG
Sbjct: 423 VGYL---DENGR-------LFVVGRDDEMIV-SGGENVYPIEVEKTLATHPDVAEAAVIG 471

Query: 419 QDQRRPG----AIIVPDKE 433
            D  + G    A +V    
Sbjct: 472 VDDEQYGQRLAAFVVLKPG 490

Length = 537

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 60.7 bits (148), Expect = 7e-10
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 33/133 (24%)

Query: 269 GVKVQVGYGLTESSPV--IAARRPTCNVLGS------------VGHPINHTEIKIVDAET 314
             ++   YG TE+ P+  I +R     +L +            VG P++  E++I+    
Sbjct: 315 DAEILTPYGATEALPISSIESR----EILFATRAATDNGAGICVGRPVDGVEVRIIAISD 370

Query: 315 N--------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WLNTGDIGWI 362
                      L  G  G + V G  V + Y+  P AT+ A   D  G  W   GD+G++
Sbjct: 371 APIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYL 430

Query: 363 APHHSRGRSRRCG 375
                 GR   CG
Sbjct: 431 DAQ---GRLWFCG 440

Length = 552

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.8 bits (148), Expect = 8e-10
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 54  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWH 111
                DD+A  +YTSGTTG PKG  LTH+NL          VP   +  ++ L+ LP +H
Sbjct: 214 PRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFH 273

Query: 112 VYERA-CGYFIFSRGIELMYTA---VRNLKDDLQRYQPHYMISVPLVYETL 158
            Y    C     S G EL+      +  + D ++++ P ++  VP +YE +
Sbjct: 274 AYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKI 324

Length = 573

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 60.7 bits (148), Expect = 9e-10
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 57  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERA 116
           G+DD+A  +YTSGTTG  KG ML+H NLL    +L D       D  +  LP +H +   
Sbjct: 154 GADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTH--- 210

Query: 117 CGYFIFSRGI 126
            G F+ +   
Sbjct: 211 -GLFVATNVA 219

Length = 504

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 60.4 bits (146), Expect = 9e-10
 Identities = 66/231 (28%), Positives = 100/231 (43%), Gaps = 31/231 (13%)

Query: 196 GFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYK-KIQSAIGISKAGVSGG 254
           G C+T  +   S L  L       +    L P   L  KLV + K  +A   S   V  G
Sbjct: 240 GLCVTGGENTTSLLEILTT---NAVATTCLVPT--LLSKLVSELKSANATVPSLRLVGYG 294

Query: 255 GSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAARRPTCN------VLGSVGHPINHTEI 307
           GS  +  D+ F EA GV+    YGL+E+    A   PT +        G+VG P    ++
Sbjct: 295 GSRAIAADVRFIEATGVRTAQVYGLSETG-CTALCLPTDDGSIVKIEAGAVGRPYPGVDV 353

Query: 308 KIVDAE-----TNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
            +   +          P+ S G + ++    M GY+ NP  T + L  DGW+NTGD+   
Sbjct: 354 YLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDL--- 409

Query: 363 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 413
                    RR  G   ++GR+ + I+   G N+ P E++  A   S +R+
Sbjct: 410 -------LERREDGFFYIKGRSSEMII-CGGVNIAPDEVDRIAEGVSGVRE 452

Length = 540

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.6 bits (147), Expect = 9e-10
 Identities = 64/223 (28%), Positives = 94/223 (42%), Gaps = 47/223 (21%)

Query: 254 GGSL--PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG--------SVGHPIN 303
           GGS   P+ I  + E  GV V   +G+TE+SPV    RP   V G        S G    
Sbjct: 306 GGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPA 365

Query: 304 HTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSAT----------------K 345
             E +IV+    +V+ +  +  G ++VRG+ V   Y+ +P+                   
Sbjct: 366 SLEYRIVN--DGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAN 423

Query: 346 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA 405
                DGWL TGD+G +             G L +  RA+D I  S GE +   +LE   
Sbjct: 424 DRFTADGWLRTGDVGSVTRD----------GFLTIHDRARDVI-RSGGEWIYSAQLENYI 472

Query: 406 LRSSLIRQIVVIG-QDQR---RPGAIIV--PDKEEVLMAAKRL 442
           + +  + +  VIG  D +   RP A+ V  P  E     A+RL
Sbjct: 473 MAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERL 515

Length = 576

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 11/77 (14%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC 117
            DD+A  +YTSG+TG PKGVML+H+NL    RS+   +     D+ L++LP         
Sbjct: 1   DDDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLP--------- 51

Query: 118 GYFIFSRGIELMYTAVR 134
             F F  G+  + TA R
Sbjct: 52  --FSFDYGLSQLLTAFR 66

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 60.1 bits (147), Expect = 1e-09
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 58  SDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 104
            DD+A YV YTSG+TG PKGVM+ H+ L++ +  L +      GD+ L
Sbjct: 92  PDDLA-YVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVL 138

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 20/49 (40%), Positives = 32/49 (65%)

Query: 57  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 105
           G DD+A  +YTSG+TG PKGV++TH++L++ +  L      +  D+ L 
Sbjct: 118 GPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQ 166

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 55  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 104
           T   DD A  +YTSG+TG PKGV++TH+N+ + +R+   I+    GD+ L
Sbjct: 95  TSSPDDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVL 144

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 112
           DD+A   YTSGTTG PKG M TH+ +L    +             L+ LP +HV
Sbjct: 84  DDVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLFHV 137

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 10/65 (15%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN-------GDKFLSMLP 108
           I  DD+    Y+SGTTG PKGVMLTHK L   + S+   V  EN        D  L +LP
Sbjct: 176 ISPDDVVALPYSSGTTGLPKGVMLTHKGL---VTSVAQQVDGENPNLYFHSDDVILCVLP 232

Query: 109 PWHVY 113
            +H+Y
Sbjct: 233 MFHIY 237

Length = 537

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 31/203 (15%)

Query: 261 IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVL--GSVGHPINHTEIKIVDAETNEVL 318
           +  F   +GV +   YG TE+   +       + +  GS+G P+    I ++D +   + 
Sbjct: 222 VRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLDDDGQPLA 281

Query: 319 PAGSKGIVKVRGSQ----VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 374
             G  G + +  +        GY+ +P  T + +    W  TGD+            R  
Sbjct: 282 D-GEPGQLAIDVASSPLLWFSGYWDDPEKTAELIA-GRWYVTGDLV----------ERDE 329

Query: 375 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPD--K 432
            G     GRA D I+ S G  + P ++E A L    + +  V+G          VPD  +
Sbjct: 330 DGYFWFIGRADDVII-SAGYRIGPFDVESALLEHPAVAEAAVVG----------VPDPLR 378

Query: 433 EEVLMAAKRLSIVHADASELSKE 455
            E++ A   L   +A + EL++E
Sbjct: 379 GEIVKAFVVLKEGYAGSDELAEE 401

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 57  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYE-R 115
             +D+A  ++TSGT   PKGV LTH NLL   R+       +  D  +S LPP+H Y   
Sbjct: 181 DPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFN 240

Query: 116 ACGYFIFSRGIELMYT 131
           +C  F    G+ +++ 
Sbjct: 241 SCTLFPLLSGVPVVFA 256

Length = 539

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.3 bits (139), Expect = 9e-09
 Identities = 23/58 (39%), Positives = 31/58 (53%)

Query: 55  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 112
           T G DD+A   YTSGTTG PKG M TH+ ++           +      L++LP +HV
Sbjct: 186 TAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHV 243

Length = 546

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 57.9 bits (140), Expect = 9e-09
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 15/112 (13%)

Query: 294 VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG 352
           VL S G       + IVD ++ EVL     G +   G  +  GY++NP A+ +   E DG
Sbjct: 368 VLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDG 427

Query: 353 --WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 402
             WL TGD+G++         R   G L + GR KD +++  G N+ P ++E
Sbjct: 428 RTWLRTGDLGFL---------RD--GELFVTGRLKDMLIVR-GHNLYPQDIE 467

Length = 4334

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 57.2 bits (138), Expect = 9e-09
 Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 28/178 (15%)

Query: 266 EAIGVKVQVGYGLTESSPVIAARR---------PTCNVLGSVGHPINHTEIKIVDAETNE 316
                 V   +G+TE++  +   +         P  +  G VG      +I+IV ++   
Sbjct: 317 TEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVST-GLVGRSTG-AQIRIVGSDGLP 374

Query: 317 VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG 376
            LPAG+ G V +RG+ V++GY  +P+ T      DGWL TGD+G          S    G
Sbjct: 375 -LPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLG----------SLSAAG 422

Query: 377 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQ---RRPGAIIVP 430
            L + GR K+ I    GE + P  +E        + +  V G  DQ       A+IVP
Sbjct: 423 DLSIRGRIKELINRG-GEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVP 479

Length = 534

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 56.3 bits (137), Expect = 1e-08
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLL-HQIRSLYDIVPAENGDKFLSMLPPWH 111
           DD A  +YTSGTTG PKGVMLTH+NLL + + +L  +  +  GD +L   P +H
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSP-GDVYLLAAPLYH 53

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 10/108 (9%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER-A 116
            DD+A Y +T GTTG PK    +H+N +        +     GD  L+ LP +HV     
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIV 60

Query: 117 CGYFIFSRGIELMY---------TAVRNLKDDLQRYQPHYMISVPLVY 155
            G    +RG  ++            V N    ++RY+   + +VP V 
Sbjct: 61  TGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL 108

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 25/55 (45%), Positives = 32/55 (58%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 112
            DD+A  +YTSGTTG PKGVM TH  LL ++RS  + +     D  L   P  H+
Sbjct: 92  PDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMPSPLAHI 146

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 18/119 (15%)

Query: 263  LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS 322
             + E  G+++  GYG+TE++PVIA   P  N  G+VG  +   E ++        +  G 
Sbjct: 926  TWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPG---IDEG- 981

Query: 323  KGIVKVRGSQVMQGYFK--NPSATKQALDEDGWLNTGDI------GWIAPHHSRGRSRR 373
             G + VRG  VM GY +  NP   +     DGW +TGDI      G+I     +GR++R
Sbjct: 982  -GRLFVRGPNVMLGYLRAENPGVLEPP--ADGWYDTGDIVTIDEEGFIT---IKGRAKR 1034

Length = 1140

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 55.3 bits (134), Expect = 3e-08
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 6/58 (10%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPPWHV 112
            DD A  ++TSGTTG PKGV LTHKNLL   R++   + + P    D+ L+++P +H+
Sbjct: 1   PDDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTP---SDRCLNVMPLFHI 55

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 44  SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENG 100
           +  A +        +DD+A   YT GTTG  KG MLTH+NL   + Q R+L      E  
Sbjct: 192 AKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGC 251

Query: 101 DKFLSMLPPWHVY 113
           +  ++ LP +H+Y
Sbjct: 252 EILIAPLPLYHIY 264

Length = 562

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 42/164 (25%), Positives = 61/164 (37%), Gaps = 23/164 (14%)

Query: 7   LWGKKSSVAPDIVE--EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATY 64
           L G K    P I       +  +D  +      R  FS             IG DD+A Y
Sbjct: 170 LPGPKRLAVPLIRRKAHARILDFDAELARQPGDR-LFSGRP----------IGPDDVAAY 218

Query: 65  VYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER-ACGYFIFS 123
            +T GTTG PK    TH N +        ++    GD     LP +HV      G    +
Sbjct: 219 FHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLA 278

Query: 124 RGIELMY---------TAVRNLKDDLQRYQPHYMISVPLVYETL 158
           RG  ++            + N    ++RY+ +++  VP VY  L
Sbjct: 279 RGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAAL 322

Length = 632

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 7/74 (9%)

Query: 46  DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI----VPAENGD 101
            A    ++  +  DD+A   YT GTTG PKG MLTH NL   + S+YD+      A  GD
Sbjct: 179 GAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAV-SIYDVWGKPSRATRGD 237

Query: 102 --KFLSMLPPWHVY 113
             + + +LP +H+Y
Sbjct: 238 VERVICVLPLFHIY 251

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 57/237 (24%)

Query: 254 GGSL--PMHIDLFYEAIGVKVQVGYGLTESSPV--------------IAARRPTCNVLGS 297
           GGS   P  I  F +  GV+V   +G+TE SP+              +  +R    +L  
Sbjct: 301 GGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQR---KLLEK 357

Query: 298 VGHPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 355
            G  I   ++KIV  +  E LP   K  G ++VRG  V+  YF+  ++    L  DGW  
Sbjct: 358 QGRVIYGVDMKIVGDDGRE-LPWDGKAFGDLQVRGPWVIDRYFRGDAS---PLV-DGWFP 412

Query: 356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIV 415
           TGD+  I             G + +  R+KD I  S GE +  +++E  A+    + +  
Sbjct: 413 TGDVATIDAD----------GFMQITDRSKDVIK-SGGEWISSIDIENVAVAHPAVAEAA 461

Query: 416 VIGQDQRRPGAIIVP----DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 468
            I                 D+  +L+  KR        +E+++E+ ++   G++ KW
Sbjct: 462 CIA----------CAHPKWDERPLLVVVKR------PGAEVTREELLAFYEGKVAKW 502

Length = 539

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 54.9 bits (133), Expect = 4e-08
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 60  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 112
           D A  +YTSGTTG PKGV+LTH  LL   R    ++     D  L+ LP +H+
Sbjct: 82  DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHI 134

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 112
           D IAT ++TSGTTG PK V  T +N         + +     D +L  LP +H+
Sbjct: 111 DQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHI 164

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 6/66 (9%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLL---HQIRSLYDIVPAENGDKFLSMLPPWHVYE 114
            +D A  ++TSG+ G+PKGV+ +HK+LL    QI+++ D  P    D+F+S LP +H + 
Sbjct: 364 PEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPN---DRFMSALPLFHSFG 420

Query: 115 RACGYF 120
              G F
Sbjct: 421 LTVGLF 426

Length = 718

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 54.8 bits (133), Expect = 6e-08
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 25  FSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL 84
            ++DE++ LGR         +DA    +  T+  DD     YTSGTTG PKG  LTH+N+
Sbjct: 172 LNFDELLALGR-------AVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNI 224

Query: 85  L 85
           L
Sbjct: 225 L 225

Length = 559

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 54.5 bits (132), Expect = 7e-08
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 12/77 (15%)

Query: 57  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI---RSLYDIVPAENGDKFLSMLPPWHVY 113
             DD+A  ++TSG+TG PKGV+ TH     QI   R  Y I P   G+  L   P + ++
Sbjct: 172 APDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEP---GEIDLPTFPLFALF 228

Query: 114 ERACG------YFIFSR 124
             A G          +R
Sbjct: 229 GPALGMTSVIPDMDPTR 245

Length = 552

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE--NGDKFLSMLPPWH 111
           +  DD+A  +YTSGT   PKG MLTH+ L+ +  S   IV  +    D  L  LP +H
Sbjct: 168 LADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSC--IVAGDMSADDIPLHALPLYH 223

Length = 523

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLH---QIRSLYDIVPAENGDKFL 104
           DD+A  ++TSG+TG PKGV ++H NL      +   +D+     GD F 
Sbjct: 97  DDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTE---GDVFS 142

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 25/192 (13%)

Query: 275 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 334
            YG TE++    A R T     ++G P+ +    ++D +   ++P G+ G + + G  V 
Sbjct: 237 TYGPTEATVTATASRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVA 296

Query: 335 QGYFKNPSATKQALDEDGWLN---------TGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 385
           +GY   P  T +    D +           TGD+                G L   GR K
Sbjct: 297 RGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLED----------GSLEFLGR-K 345

Query: 386 DTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQDQRRPGAIIVPDKEEVLMAAKR 441
           D  V   G+ +E  E+E        +    V+        ++  A +  D       A  
Sbjct: 346 DDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADV 405

Query: 442 LSI-VHADASEL 452
               + +   E 
Sbjct: 406 DIALLRSALRER 417

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 6/112 (5%)

Query: 53  YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP--- 109
            + +  D +A  +YTSG+TG PKGV + H+ L + +         +  D+ L++      
Sbjct: 360 PQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFD 419

Query: 110 ---WHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 158
              + ++              L+      L + L+      ++ VPL+   L
Sbjct: 420 ASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLL 471

Length = 642

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 112
           D  AT ++TSG+TG PK V+ T  N L   R   + +     D +L  LP +HV
Sbjct: 77  DRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLGLTPDDNWLLSLPLFHV 130

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 33/190 (17%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNL----LHQIRSLYDIVPAENGDKFLSMLPPWHVYE 114
           +D+A   YT GTTG PKGVMLTHKNL    L  ++ LY+    E  +  L +LP +HVY 
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGE--EVVLGVLPFFHVYG 263

Query: 115 RAC--------GY---FIFSRGIELMYTAVRNLKDDLQRYQPHYMISV---PLVYETLYS 160
                      GY    I    +++++ A++  K  L    P   I++   PL+ E   S
Sbjct: 264 MTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDIS 323

Query: 161 GIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARI 220
            I+  I  S+     V      ++       ++ EG+ LT      S  V   ++LW + 
Sbjct: 324 SIRACISGSAPLPVEVQEKFETVTGG-----KLVEGYGLTE-----SSPVTHSNFLWEKR 373

Query: 221 I---CAILWP 227
           +     + WP
Sbjct: 374 VPGSIGVPWP 383

Length = 563

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 112
            DD A  + TSG+TG PK V+LTH+N+L +      +      D  L+ +P  HV
Sbjct: 166 PDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVSLNWMPLDHV 220

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 9/65 (13%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-------SLYDIVPAENGDKFLSMLP 108
           I  DD+A  +Y+SGTTG  KGV+LTH+NL+  +        S Y+   ++N   +L+ LP
Sbjct: 195 IKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDN--VYLAALP 252

Query: 109 PWHVY 113
            +H+Y
Sbjct: 253 MFHIY 257

Length = 560

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 49/207 (23%), Positives = 84/207 (40%), Gaps = 22/207 (10%)

Query: 210 VALIDWLWARIICAILW---PLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPM-HIDLFY 265
            AL++ L A+ I  +L     L LL    +   + S     +  +SGG +LP+  +    
Sbjct: 447 AALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLL 506

Query: 266 EAIGVKVQV--GYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIVDAETNEVLPAG 321
           +   +  ++   YG TE++    +   +  +   V  G P+ +T++ I+D +    LP G
Sbjct: 507 QLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLG 565

Query: 322 SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIG-WIAPHHSRGRSRRCGGVLVL 380
             G + + G  +  GY   P  T +         TGD+   +A            G L  
Sbjct: 566 VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLAD-----------GALEY 614

Query: 381 EGRAKDTIVLSTGENVEPLELEEAALR 407
            GR  D+ V   G  +E  E+E A   
Sbjct: 615 LGRK-DSQVKIRGFRIELGEIEAALAE 640

Length = 642

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 108
             D+A  +YTSG+TG PKGV+L+H+NL+   +S+   +     D+ L++LP
Sbjct: 162 DSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLP 212

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 13/115 (11%)

Query: 294 VLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG 352
           +  + G P+    E+ + DA+ N + P G  G +  RG    +GY+K+P     A D +G
Sbjct: 351 IFTTQGRPMSPDDEVWVADADGNPL-PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANG 409

Query: 353 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR 407
           +  +GD+  I P           G + + GR KD I    GE +   E+E   LR
Sbjct: 410 FYCSGDLVSIDP----------DGYITVVGREKDQIN-RGGEKIAAEEIENLLLR 453

Length = 536

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 105
            DD+A  +YTSG+TG PKGV ++H+ L++ + S+         D+ L+
Sbjct: 92  PDDLAYVIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLA 139

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 46  DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV 95
            A + +++E + +DD    +YTSGTTG PKG++ +H   L + R      
Sbjct: 158 KASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFH 207

Length = 528

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 6/63 (9%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVYER 115
           DD A  ++TSG+TG PKGV+ TH+     +  +RSLY I     GD+ L+  PP+ ++  
Sbjct: 85  DDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIRE---GDRDLAAFPPFALFGP 141

Query: 116 ACG 118
           A G
Sbjct: 142 ALG 144

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 51.4 bits (124), Expect = 6e-07
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 15/92 (16%)

Query: 23  PVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK 82
            V++Y+E+++             +    Y++  +  +  A   YTSGTTGNPKGV+ +H+
Sbjct: 139 NVYAYEELLE-------------EESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHR 185

Query: 83  NL-LHQIRS-LYDIVPAENGDKFLSMLPPWHV 112
           +L LH + S L D +     D  L ++P +HV
Sbjct: 186 SLVLHTLASALPDSLGLSESDTVLPVVPMFHV 217

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 54  ETIGSDDIATYVYTSGTTGNPKGVMLTHKN 83
           E    D++AT +YTSGTTG PKGV+ T+ N
Sbjct: 136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGN 165

Length = 483

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 20/116 (17%)

Query: 55  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-------QIRSLYDIVPAENGDKFLSML 107
            + +DD A  ++TSGTT  PKGV++TH NL         Q     D       D +L+++
Sbjct: 169 PLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDD-------DVYLTVM 221

Query: 108 PPWHV-YERACGYFIFSRGIELM----YTAVRNLKDDLQRYQPHYMISVPLVYETL 158
           P +H+  +       FS G   +    Y+A R     + +Y+      +P++  TL
Sbjct: 222 PAFHIDCQCTAAMAAFSAGATFVLLEKYSA-RAFWGQVCKYRATITECIPMMIRTL 276

Length = 517

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 52/234 (22%)

Query: 251 VSGGGSLPMHIDL---FYEAI--GVKVQVGYGLTESSPV--------IAARRP------- 290
           +S G   P+  DL   F   +    ++   YG TE+ PV        +A           
Sbjct: 205 LSAGA--PVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEAGAG 262

Query: 291 TCNVLGSVGHPINHTEIKIVDA--------ETNEVLPAGSKGIVKVRGSQVMQGYFKNPS 342
            C     VGHP+   +++I+          + +  LP G  G + V G  V + Y+  P 
Sbjct: 263 VC-----VGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPE 317

Query: 343 ATKQA---LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL 399
           ATK A        W   GD+G+      +GR       L   GR K   V + G  +  +
Sbjct: 318 ATKLAKISDGNRIWHRMGDLGYFDD---QGR-------LWFCGR-KAHRVETAGGTLFTV 366

Query: 400 ELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADAS 450
            +E+   R   +R+  ++G  +   + P  ++ P    +    +    + A A 
Sbjct: 367 PVEQVFNRHPGVRRSALVGVGKPGTQAPVLVVEPMPPVLDRRKRLEGRLRATAK 420

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA-----ENGDKFLSMLPPW 110
           I  DDIA   YT GTTG  KG MLTH+NL+  ++  +  +       E  +  ++ LP +
Sbjct: 205 IEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLY 264

Query: 111 HVYERACGYFIF 122
           H++       +F
Sbjct: 265 HIFALTANGLVF 276

Length = 560

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 51.3 bits (124), Expect = 7e-07
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 27/177 (15%)

Query: 275 GYGLTESSPVIAARRPTCNVLG----SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 330
            YG TE++  +       + L      +G PI +T + ++D +   V P G  G + + G
Sbjct: 240 AYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLDEDLRPV-PVGVPGELYIGG 298

Query: 331 SQVMQGYFKNPSATKQALDEDGWLN-------TGDIGWIAPHHSRGRSRRCGGVLVLEGR 383
           + V +GY   P  T +    D +         TGD+    P           G L   GR
Sbjct: 299 AGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPD----------GNLEFLGR 348

Query: 384 AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVL 436
           A D + +  G  +E  E+E A L    +R+ VV+ ++         A +VP     L
Sbjct: 349 ADDQVKIR-GYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAEL 404

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 51.5 bits (124), Expect = 7e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 111
           DD A  ++TSG+ G PKGV+L+H+NLL     +   +     DK  + LP +H
Sbjct: 793 DDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFH 845

Length = 1140

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 48  RKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFL 104
           R  Y    +  +D+A   YT GTTG  KG MLTH+N+   L Q ++ Y  +     +  +
Sbjct: 195 RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVV 254

Query: 105 SMLPPWHVYERA--CGYFIFSRGIELMYTAVRNLK---DDLQRYQ 144
           + LP +H++     C  FI   G  L+ T  R++     +L++Y 
Sbjct: 255 TALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYP 299

Length = 560

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 26/124 (20%)

Query: 53  YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDK--FLSMLPPW 110
           +  +G D +A Y++TSG+TG PK V+ TH+ L      +    P    +    +  L PW
Sbjct: 158 FAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPPVLVDWL-PW 216

Query: 111 -HVYERACGYFIFSRGIE---------------LMYTAVRNLKDDLQRYQPHYMISVPLV 154
            H +    G   F+  +                L    +RNL++      P    +VP  
Sbjct: 217 NHTFG---GNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLRE----VSPTVYFNVPKG 269

Query: 155 YETL 158
           +E L
Sbjct: 270 FEML 273

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 27/212 (12%)

Query: 251 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 309
           V+GG  L P  ++ +    G+ +  GYG TE+  + A  +      GS+G      +++I
Sbjct: 297 VTGGEPLNPEVLEQWKAQTGLDLYEGYGQTETGLICANFKGMKIKPGSMGKASPPYDVQI 356

Query: 310 VDAETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 364
           +D   N VLP G++G + +R            Y  NP  T   +  D ++ TGD      
Sbjct: 357 IDDNGN-VLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGD------ 408

Query: 365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQRR 423
              RG      G     GRA D ++ S+G  + P E+E A +   +++   VV   D  R
Sbjct: 409 ---RGIMDE-DGYFWFVGRADD-VINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIR 463

Query: 424 PGAIIVPDKEEVLMAAKRLSIVHADASELSKE 455
            G ++   K  V++A + LS    D  +L+KE
Sbjct: 464 -GEVV---KAFVVLAPQFLS---HDPEQLTKE 488

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 16/128 (12%)

Query: 47  ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-------RSLYDIVPAEN 99
           AR+ +K   +G DD+A   YT GTTG  KG  L H+N++  +       +  ++  P  +
Sbjct: 192 ARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPD 251

Query: 100 GDKFLSMLPPWHVYERACGYFIFSR--GIELMYTAVRNLK---DDLQRYQPHYMISVPLV 154
              F+  LP +H++       +  R  G  ++    R++     +L++YQ H   +V   
Sbjct: 252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAV--- 308

Query: 155 YETLYSGI 162
             TLY+ +
Sbjct: 309 -NTLYNAL 315

Length = 557

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 25/155 (16%)

Query: 275 GYGLTESSPVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 329
            YG TE++    A               +G P+ +T + ++D +   V P G  G + + 
Sbjct: 267 LYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPV-PVGVVGELYIG 325

Query: 330 GSQVMQGYFKNPSATKQA-LDEDGWLN-------TGDIGWIAPHHSRGRSRRCGGVLVLE 381
           G  V +GY   P  T +  + +            TGD+                G L   
Sbjct: 326 GPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLV----------RYLPDGNLEFL 375

Query: 382 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV 416
           GR  D + +  G  +E  E+E A LR   +R+ VV
Sbjct: 376 GRIDDQVKIR-GYRIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 49/188 (26%), Positives = 74/188 (39%), Gaps = 44/188 (23%)

Query: 269 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPA---GSKG- 324
           G +V+ GYG +E + VI  R P     GS+G       + I + ET          + G 
Sbjct: 288 GCQVEDGYGSSEGA-VIVVREPGTPP-GSIGRGAP--GVAIYNPETLTECAVARFDAHGA 343

Query: 325 ----------IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC 374
                     +V   G+   +GY+ NP AT + +   G   +GD+ +          R  
Sbjct: 344 LLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAY----------RDA 392

Query: 375 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEE 434
            G +   GR  D + +  GEN+    +E   LR   I ++ V            VPD E 
Sbjct: 393 DGWIYFAGRTADWMRVD-GENLSAAPIERILLRHPAINRVAVYA----------VPD-ER 440

Query: 435 V---LMAA 439
           V   +MAA
Sbjct: 441 VGDQVMAA 448

Length = 540

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 10/73 (13%)

Query: 13  SVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTG 72
              P  +  IPV + DE+ D+         D            +  DD    ++TSGTTG
Sbjct: 107 EELPLEILGIPVITLDELKDIFATGNPYDFDH----------AVKGDDNYYIIFTSGTTG 156

Query: 73  NPKGVMLTHKNLL 85
            PKGV ++H NL+
Sbjct: 157 KPKGVQISHDNLV 169

Length = 503

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLL 85
           + +DD+A  +YTSG+TG PKGV + H+ ++
Sbjct: 124 VDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 53  YETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPP 109
           +  +G D IA +++TSG+TG PK V+ TH+ L      +   +    AE     +  L P
Sbjct: 203 HAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFP-FLAEEPPVLVDWL-P 260

Query: 110 WH 111
           W+
Sbjct: 261 WN 262

Length = 614

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 18/157 (11%)

Query: 279 TESSPVIAARRPTCNVL-GSVGHPINHTEIKIVDAETNEVLP---AGSKGIVKVRGS--Q 332
           TE+  ++ A  P   V  GS+G P+   E  +++ + + + P    G  G + ++     
Sbjct: 242 TETGAIMIANYPGIPVKPGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPS 301

Query: 333 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLST 392
           + +GY  N      +   DGW  TGD+ +          R   G     GRA D I  + 
Sbjct: 302 MFRGYLGNEERYASSF-VDGWYLTGDLAY----------RDEDGYFWFVGRADDVI-KTA 349

Query: 393 GENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV 429
           G  V P E+E A +    + +  VIG+     G I+ 
Sbjct: 350 GHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVK 386

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 30/160 (18%)

Query: 276 YGLTE------SSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 329
           YG TE       + V AA  P      ++G PI +T++ ++D +  + +P G  G + + 
Sbjct: 237 YGPTETTIWSTCARVTAADGP-----VTIGRPIANTQVYVLDED-LQPVPPGVPGELYIG 290

Query: 330 GSQVMQGYFKNPSATKQAL-----DEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEG 382
           G  V +GY   P  T +       D+ G     TGD           R  R  G L   G
Sbjct: 291 GDGVARGYLGRPELTAERFVPDPFDDPGGRLYRTGD---------LVR-WRPDGRLEYLG 340

Query: 383 RAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR 422
           RA D + +  G  +E  E+E A      +   VV+ +++ 
Sbjct: 341 RADDQVKIR-GFRIELGEIEAALRAHPGVADAVVVVREEG 379

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 41/197 (20%)

Query: 258 PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEV 317
           P  I  F    G  V  G+G TE   V   R P     G++G       + IVD +T   
Sbjct: 279 PGDIARFARRFGCVVVDGFGSTEGG-VAITRTPDTPP-GALGPLPP--GVAIVDPDTGTE 334

Query: 318 LPAGSKG-------------IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 364
            P                  +V   G    +GY+ +P A  + +   G   +GD+ +   
Sbjct: 335 CPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDA 393

Query: 365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 424
                      G     GR  D + +  GEN+    +E   LR     ++ V        
Sbjct: 394 D----------GYAYFAGRLGDWMRVD-GENLGTAPIERILLRYPDATEVAVYA------ 436

Query: 425 GAIIVPDKE--EVLMAA 439
               VPD    + +MAA
Sbjct: 437 ----VPDPVVGDQVMAA 449

Length = 529

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 56  IGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRS 90
           +  DD+A YV +TSG+TG PKGVM+TH+  ++ I  
Sbjct: 123 VDPDDLA-YVIFTSGSTGEPKGVMITHRAAVNTILD 157

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 13/108 (12%)

Query: 12  SSVAPDIVEEIPVFSYDEI--------IDLGRESRKAFSDSNDARKHYKYETIGSDDIAT 63
                D+     ++              DL   +  A + +  +R       + + D A 
Sbjct: 149 EEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPASR-----SGVTAKDTAF 203

Query: 64  YVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 111
           Y+YTSGTTG PK  +++H   L  +     ++     D     LP +H
Sbjct: 204 YIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYH 251

Length = 600

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 38/162 (23%)

Query: 276 YGLTES------SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 329
           YGLTE+       P    RRP      S+G  I + E+ ++  + +E  P     +V  R
Sbjct: 309 YGLTEAFRSTYLPPEEVDRRPD-----SIGKAIPNAEVLVLREDGSECAPGEEGELVH-R 362

Query: 330 GSQVMQGYFKNPSATKQ------------ALDEDG-WLNTGDIGWIAPHHSRGRSRRCGG 376
           G+ V  GY+ +P  T +             L E   W  +GD             R   G
Sbjct: 363 GALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVW--SGDTVR----------RDEEG 410

Query: 377 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG 418
            L   GR +D ++ ++G  V P E+EE A  + L+ + V  G
Sbjct: 411 FLYFVGR-RDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFG 451

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 43/150 (28%), Positives = 62/150 (41%), Gaps = 21/150 (14%)

Query: 276 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 330
           YG TE++  + + + T  +L       +G       + I+D E  E LP G KG + + G
Sbjct: 291 YGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVG 349

Query: 331 SQVMQGYFKNPSATKQALDEDGWL---NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 387
             V +GY  NP  T +A           TGD G I             G L  +GR    
Sbjct: 350 PSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTIT-----------DGQLFYQGRLDFQ 398

Query: 388 IVLSTGENVEPLELEEAALRSSLIRQIVVI 417
           I L  G  +E  ++E    +SS I   VV+
Sbjct: 399 IKLH-GYRIELEDIEFNLRQSSYIESAVVV 427

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 57  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 89
           G DD+   +YTSGTTG PKGVM T   L+  I 
Sbjct: 195 GPDDVTQLIYTSGTTGEPKGVMHTANTLMANIV 227

Length = 547

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 21  EIPVFSYDEIIDLGRESRKAFSDSND-ARKHYKYETIGSDDIATYVYTSGTTGNPKGVML 79
            +PV    E    G  + K   ++ D A      E I   D+    ++SGTTG  KGVML
Sbjct: 145 GLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVML 204

Query: 80  THKNLLHQI-RSLYDIVPAENGD-KFLSMLPPWHVY 113
           TH+NL+  +  SL+ + P   G    L ++P +H+Y
Sbjct: 205 THRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIY 240

Length = 546

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 17/73 (23%)

Query: 55  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI---RSLYDIVPAENGDKFLS------ 105
           T GSDD A  +YTSGTTG PKG +  H+ LL  +      +++ P   GD F +      
Sbjct: 84  TDGSDDPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAP-RPGDVFWTPADWAW 142

Query: 106 -------MLPPWH 111
                  +LP  +
Sbjct: 143 IGGLLDVLLPALY 155

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 12/111 (10%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAENGDKFLSMLPPWHVYERA 116
           DD+A ++Y+SG+TG PKGV+  H ++L      Y  +++     D   S    +  Y   
Sbjct: 161 DDMAFWLYSSGSTGRPKGVVHLHHDMLVTAE-AYAKNVLGITEDDVVFSAAKLFFAYGLG 219

Query: 117 CG-YFIFSRGIELMYTAVRNLKDD----LQRYQPHYMISVPLVYETLYSGI 162
            G YF  S G   +    R   D     ++RY+P     VP    TLY+ +
Sbjct: 220 NGLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGVP----TLYAAM 266

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 15/95 (15%)

Query: 20  EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVML 79
           E I V+SY+ ++D GR +             Y +  +     A   Y++GTTG PKGV+ 
Sbjct: 155 EGIKVYSYEALLD-GRST------------VYDWPELDETTAAAICYSTGTTGAPKGVVY 201

Query: 80  THKNLLHQIRSLY--DIVPAENGDKFLSMLPPWHV 112
           +H++L  Q  SL   D +   +G+ FL  +P +HV
Sbjct: 202 SHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHV 236

Length = 576

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 51/192 (26%), Positives = 74/192 (38%), Gaps = 33/192 (17%)

Query: 258 PMHIDLFYEAI-GVKVQVGYGLTES-----SPVIAARRPTCNVLGSV--GHPINHTEIKI 309
           P H+     A  G+++  GYG TE+       VI           S+  G PI +T + I
Sbjct: 254 PAHVRRVLAACPGLRLINGYGPTENTTFSTCHVITRLDE---AADSIPIGRPIPNTTVYI 310

Query: 310 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN------TGDIGWIA 363
           +D E   V P G  G + V G  +  GY   P  T +    D +        TGD     
Sbjct: 311 LDEEGQPV-PIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGD----- 364

Query: 364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQ 419
                 R  R  G +   GR  D  V   G  +E  E+E+A L+   +R+  V+      
Sbjct: 365 ----LAR-WRPDGNIEFLGRI-DRQVKIRGFRIELGEIEQALLQHPGVREAAVLVREDAA 418

Query: 420 DQRRPGAIIVPD 431
             +R  A +V  
Sbjct: 419 GDKRLVAYVVAR 430

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 111
           D IA   YTSG+T  P GV +TH NL   +  + D +  + GD+ +S LP +H
Sbjct: 180 DTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFH 232

Length = 631

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 40/179 (22%)

Query: 253 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSV--GHPINHTEIKIV 310
           GGG  P  +     A G+ V   YG++E          T    G V  G P++   +++ 
Sbjct: 159 GGGPAPAPVLDAAAAAGINVVRTYGMSE----------TSG--GCVYDGVPLDGVRVRVE 206

Query: 311 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 370
           D            G + + G  + +GY +NP        E GW  T D+G +        
Sbjct: 207 D------------GRIALGGPTLAKGY-RNP-VDPDPFAEPGWFRTDDLGAL---DD--- 246

Query: 371 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV 429
                GVL + GRA D  + + G  V P  +E A      +    V G    R G  +V
Sbjct: 247 -----GVLTVLGRA-DDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVV 299

Length = 358

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 22/94 (23%)

Query: 307 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-----------EDGWLN 355
           ++IVD +T    PAG+ G + V G  V  GY++ P  T++              E  WL 
Sbjct: 381 VRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLR 440

Query: 356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV 389
           TGD+G+I+            G L + GR KD ++
Sbjct: 441 TGDLGFIS-----------EGELFIVGRIKDLLI 463

Length = 578

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKN 83
            D  +  YTSGTTGNPKGV+ TH+ 
Sbjct: 167 WDPISLNYTSGTTGNPKGVVYTHRG 191

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-VPAENGDKFLSMLP 108
           D +A   YT GTTG PKG   T +++++   + Y + V       FLS LP
Sbjct: 209 DALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLP 259

Length = 567

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 87
             DIA   YT GTTG PKGVM TH+++   
Sbjct: 167 PPDIAGLAYTGGTTGKPKGVMGTHRSIATM 196

Length = 524

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 25/69 (36%), Positives = 30/69 (43%)

Query: 43  DSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDK 102
           D+ DA           DD+   +YTSGTTG PKGVM T   L   I    + +    GD 
Sbjct: 179 DTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDV 238

Query: 103 FLSMLPPWH 111
            L   P  H
Sbjct: 239 ILMASPMAH 247

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 47  ARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK-NLLHQIRSLY-DIVPAENGDKFL 104
           A   + ++T   +  A   YTSGTTG+PKGV+ +H+ N+LH + +   D +     D  L
Sbjct: 165 ADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTML 224

Query: 105 SMLPPWH 111
            ++P +H
Sbjct: 225 PVVPLFH 231

Length = 542

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 31/194 (15%)

Query: 263 LFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS 322
           L+ +  G+++  GYG+TE +PV++   P     G+VG  +   + +++      V     
Sbjct: 498 LWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLL-----SVPGIEQ 552

Query: 323 KGIVKVRGSQVMQGYFK--------NPSA-TKQALDEDGWLNTGDIGWIAPHHSRGRSRR 373
            G ++++G  +M GY +         P+A   +   E GW +TGDI              
Sbjct: 553 GGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQ-------- 604

Query: 374 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ-IVVIGQDQRRPGAIIV--P 430
             G + ++GRAK    ++ GE V    +E+ AL  S  +Q    I  D  +  A+++   
Sbjct: 605 --GFVQIQGRAKRFAKIA-GEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT 661

Query: 431 DKE---EVLMAAKR 441
           D E   E L    R
Sbjct: 662 DSELTREKLQQYAR 675

Length = 718

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE-NGDKFLSMLPPWH 111
            G DD+A    TSG+TG+PK V +TH NL     +++     +   D  +S LP +H
Sbjct: 149 TGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFH 205

Length = 545

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 16/27 (59%), Positives = 18/27 (66%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLL 85
           DD     YTSGTTG PKG  L+H N+L
Sbjct: 201 DDPINIQYTSGTTGFPKGATLSHHNIL 227

Length = 558

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 10/69 (14%)

Query: 55  TIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKF-------L 104
            +G DDIA   YT GTTG  KG MLTH NL   + Q+R+    +  +            +
Sbjct: 203 PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMI 262

Query: 105 SMLPPWHVY 113
           + LP +H+Y
Sbjct: 263 APLPLYHIY 271

Length = 562

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 15/108 (13%)

Query: 296 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG-WL 354
           G+VG  +   ++ I+D +  E LP G  G +   G +  + Y  +P+ T +A   DG W 
Sbjct: 328 GTVGRAM-FGDLHILDDDGAE-LPPGEPGTIWFEGGRPFE-YLNDPAKTAEARHPDGTWS 384

Query: 355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 402
             GDIG++             G L L  RA   I +S G N+ P E E
Sbjct: 385 TVGDIGYVDE----------DGYLYLTDRAAFMI-ISGGVNIYPQEAE 421

Length = 511

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 29/184 (15%)

Query: 276 YGLTESSPVIAARRPTCNVLG----SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 331
           YG TE++  I     TC   G     +G PI +    I+DA    V P G  G + + G 
Sbjct: 803 YGPTEAA--IDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPV-PVGVLGELYLAGR 859

Query: 332 QVMQGYFKNPSATKQALDEDGWLN------TGDIGWIAPHHSRGRSRRCGGVLVLEGRAK 385
            + +GY   P  T +      ++       TGD           R R   GV+   GR  
Sbjct: 860 GLARGYHGRPGLTAERFVPSPFVAGERMYRTGD---------LARYRA-DGVIEYAGRID 909

Query: 386 DTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKE-----EVLMAAK 440
             + L  G  +E  E+E   L    +R+  V+  D ++    +V + E     E L A  
Sbjct: 910 HQVKLR-GLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESEGGDWREALKAHL 968

Query: 441 RLSI 444
             S+
Sbjct: 969 AASL 972

Length = 5163

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 27/153 (17%)

Query: 276 YGLTESSPVIAARRPTCNVLGS-----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 330
           YG TE++  + +   T  +L       +G+    + + I+D E    LP G +G + + G
Sbjct: 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISG 351

Query: 331 SQVMQGYFKNPSATKQAL-DEDGW--LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDT 387
             V +GY  NP  T +A    DG    +TGD G++             G+L  +GR    
Sbjct: 352 PSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLE-----------DGLLFYQGRIDFQ 400

Query: 388 IVLSTGENVEPLELEE--AALR-SSLIRQIVVI 417
           I L    N   +ELEE    LR SS +   VV+
Sbjct: 401 IKL----NGYRIELEEIEQNLRQSSYVESAVVV 429

Length = 503

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 28/136 (20%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN-GDKFLSMLPPWHVYE 114
             +DDIA ++YTSGTTG PKGVM  H++          +  AE    + L + P   ++ 
Sbjct: 88  TEADDIAYWLYTSGTTGKPKGVMHRHRDP---------LTFAEAFARELLGLQPGDRIFS 138

Query: 115 RACGYFIFSRGIELMY------TAVRN--------LKDDLQRYQPHYMISVPLVYETLYS 160
            +  +F +  G  L++      +AV          + D L R++P  +  VP     LY 
Sbjct: 139 SSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVP----ALYR 194

Query: 161 GIQKQIFTSSAARRVV 176
            + +    S+   R V
Sbjct: 195 ALLESGAGSAPLFRSV 210

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 66  YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 108
           YTSG+TG PKGV L+   L    +SL + +     ++ L +LP
Sbjct: 119 YTSGSTGQPKGVCLSAAALETVAQSLAEAIAILEPERHLCLLP 161

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 60  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY 119
           D+A +  + GTTG PK +  TH + L+  R+  +    + G  +L++LP  H +  +   
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEACGLDPGTVYLAVLPAAHNFTLSSPG 199

Query: 120 FI 121
            +
Sbjct: 200 LL 201

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLP 108
           +  DD    +YTSG+TGNPKGV ++H NL+     +    P   G +FL+  P
Sbjct: 138 VKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAP 190

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 45/166 (27%), Positives = 66/166 (39%), Gaps = 41/166 (24%)

Query: 297 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ---------- 346
           S G         IVD +T   LP G  G + + G  + +GY+  P  T++          
Sbjct: 403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRL 462

Query: 347 --------ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEP 398
                   A D+  WL TGD+G               G L + GR  D IV+  G N  P
Sbjct: 463 AEGSHADGAADDGTWLRTGDLGVYL-----------DGELYITGRIADLIVID-GRNHYP 510

Query: 399 LELE-EAALRSSLIRQIVVIGQDQRRPGAIIVP--DKEEVLMAAKR 441
            ++E   A  S ++R+  V         A  VP  D E +++ A+R
Sbjct: 511 QDIEATVAEASPMVRRGYV--------TAFTVPAEDNERLVIVAER 548

Length = 612

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 11/81 (13%)

Query: 18   IVEEIPVFSYDEIIDLGRESRKAFSDSN-DARKHYKYETIGSDDIATYVYTSGTTGNPKG 76
            ++E++P  + D  + L R     +S++N   R          +++A  +YTSG+TG PKG
Sbjct: 3202 LLEQLPAPAGDTALTLDRLDLNGYSENNPSTRVM-------GENLAYVIYTSGSTGKPKG 3254

Query: 77   VMLTH---KNLLHQIRSLYDI 94
            V + H    N L  I   Y++
Sbjct: 3255 VGVRHGALANHLCWIAEAYEL 3275

Length = 3956

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 67  TSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGI 126
           TSGTTG PKG      + L  +  L   VP   G+  L   P +H    A G+   +  +
Sbjct: 215 TSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFH----ATGWAHLTLAM 270

Query: 127 ELMYTAV-------RNLKDDLQRYQPHYMISVP 152
            L  T V           +D+ +++   ++ VP
Sbjct: 271 ALGSTVVLRRRFDPEATLEDIAKHKATALVVVP 303

Length = 549

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 57  GSDDIATYVYTSGTTGNPKGVMLTHKNLL 85
            +DD+A   +TSGTTG PKG M  H+++L
Sbjct: 145 AADDVALIGFTSGTTGLPKGTMHFHRDIL 173

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 15/95 (15%)

Query: 20  EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVML 79
              P+  Y+ ++        A          Y +     +  ++  YTSGTTGNPKG + 
Sbjct: 150 GSTPLLCYETLVG-------AQDG------DYDWPRFDENQASSLCYTSGTTGNPKGALY 196

Query: 80  THKN-LLHQIRS-LYDIVPAENGDKFLSMLPPWHV 112
           +H++ +LH   + L D +     D  L ++P +HV
Sbjct: 197 SHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHV 231

Length = 539

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 57  GSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLY----DIVPAENGDKFLSMLPP 109
                A   YTSG+T  P GVM++H+N+     Q+ S Y      VP  +    +S LP 
Sbjct: 158 DLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDT-TVVSWLPF 216

Query: 110 WH 111
           +H
Sbjct: 217 YH 218

Length = 578

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 21/195 (10%)

Query: 248  KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGS--VGHPINHT 305
            K  V GG +LP  +     A G+ +   YG TE++  +   +       +  +G PI + 
Sbjct: 3314 KRIVCGGEALPADLQQQVFA-GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANR 3372

Query: 306  EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGW------LNTGDI 359
               I+D     V P G+ G + + G  + +GY   P  T +    D +        TGD+
Sbjct: 3373 ACYILDGSLEPV-PVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDL 3431

Query: 360  GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ 419
                         R  GV+   GR  D  V   G  +E  E+E   L    +R+ VV+  
Sbjct: 3432 A----------RYRADGVIEYIGRV-DHQVKIRGFRIELGEIEARLLEHPWVREAVVLAV 3480

Query: 420  DQRRPGAIIVPDKEE 434
            D R+  A +VP+ E 
Sbjct: 3481 DGRQLVAYVVPEDEA 3495

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLL 85
           +  D++A  +YTSG+TG PKGV ++H  L 
Sbjct: 653 LDPDNLAYVIYTSGSTGQPKGVAISHGALA 682

Length = 3956

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 24/77 (31%), Positives = 39/77 (50%)

Query: 36  ESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV 95
           E   AF  S DA +     +I  + ++  ++TSGT+G PKGVML+ +NL     +   + 
Sbjct: 112 EDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG 171

Query: 96  PAENGDKFLSMLPPWHV 112
             +    FL   P +H+
Sbjct: 172 RVDAHSSFLCDAPMFHI 188

Length = 488

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ 87
           I +D  A  +YTSGTTG PKG +LTH NL  Q
Sbjct: 171 IPNDSPALIMYTSGTTGRPKGAVLTHANLTGQ 202

Length = 542

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 59 DDIATYVYTSGTTGNPKGVMLTHKNL 84
          DD+A  V TSGTTG PKG MLT   L
Sbjct: 35 DDVALVVATSGTTGTPKGAMLTAAAL 60

Length = 358

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLH 86
           DD A ++Y+SG+TG PKGV+ TH N   
Sbjct: 161 DDPAFWLYSSGSTGMPKGVVHTHSNPYW 188

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR 89
            DD+A  +YTSG+TG PKGV + H+N    ++
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRNAAALLQ 135

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 28/171 (16%)

Query: 276 YGLTES---SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ 332
           YG +E    S              S+G P+  T+  ++DA    V P G  G + + G+ 
Sbjct: 246 YGPSEDTTYSTYAEVEPGASRTP-SIGRPLAGTQAYVLDAHLQPV-PVGVPGELYIGGAG 303

Query: 333 VMQGYFKNPSATKQALDEDGWLN--------TGDIGWIAPHHSRGRSRRCGGVLVLEGRA 384
           V +GY   P  T +    + +          TGD+            RR  G L   GR 
Sbjct: 304 VARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLV----------RRRADGQLEYLGRI 353

Query: 385 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVI----GQDQRRPGAIIVPD 431
            D + +  G  +E  E+E A      + + VV+        R+  A IV D
Sbjct: 354 DDQVKVR-GFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYIVAD 403

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 55  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ---IRSLYDIVPAENGDKFLSMLPPWH 111
            +  DDIA   YTSG+T  PKGV ++H NL+     IR  + I    + D  +S LP +H
Sbjct: 162 ALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGIDLNPD-DVIVSWLPLYH 220

Length = 4334

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 56   IGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLS 105
            +   ++A  +YTSG+TG PKG    H  L   L   +  Y +  A+   +F S
Sbjct: 1715 LAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTS 1767

Length = 3956

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 26/166 (15%)

Query: 251 VSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAA--RRPTCNVLGS-------VGH 300
           +  GGS      +        +V+ GYGLTE+SPV+     +     L            
Sbjct: 275 LVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKT 334

Query: 301 PINH--TEIKIVDAETNEVLPAGSKGI--VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 356
            +      +++ D E   V P   K +  V+++G  +  GY+ N  AT+ AL  DG+  T
Sbjct: 335 GLPIPLVRLRVADEEGRPV-PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRT 393

Query: 357 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE 402
           GDI                G + ++ R KD I    GE +  ++LE
Sbjct: 394 GDIAVWDEE----------GYVEIKDRLKDLIKSG-GEWISSVDLE 428

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTH 81
           DD   + +TSGTTG PK  +LTH
Sbjct: 163 DDPCWFFFTSGTTGRPKAAVLTH 185

Length = 528

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 112
            DD     +TSGTTG PKGV ++H  L+ Q  +   IV     D +L   P  H+
Sbjct: 171 PDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHI 225

Length = 563

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 59   DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLS 105
            +++A  +YTSG+TG PKGV ++H  L+   ++    Y++ PA+   +F+S
Sbjct: 2146 ENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYELSPADCELQFMS 2195

Length = 5163

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 111
           DD A  +YTSGTTG PKG  ++ +  L     L   +  +  D+  + +P +H
Sbjct: 87  DDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLYH 139

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 60  DIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHV 112
             A Y+YTSGTTG PK   ++H  +L Q   +  +      D   + LP +H 
Sbjct: 143 STALYIYTSGTTGLPKAARISHLRVL-QCSGMLSLCGVTADDVVYTTLPLYHS 194

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 18/35 (51%), Positives = 22/35 (62%)

Query: 46  DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLT 80
            AR  ++Y     D  A  VYTSGTTG PKGV+L+
Sbjct: 115 HARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLS 149

Length = 471

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 31/119 (26%)

Query: 309 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ-----------------ALDED 351
           IVD ET   LP G  G + + G+ +  GY+  P  T                   A D+ 
Sbjct: 404 IVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDA 463

Query: 352 GWLNTGDIG-WIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS 409
            W+ TGD G +              G L + GR KD +++  G N  P +LE  A  ++
Sbjct: 464 LWVRTGDYGVYF------------DGELYITGRVKDLVIID-GRNHYPQDLEYTAQEAT 509

Length = 631

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 26/143 (18%)

Query: 308 KIVDAETNEVLPA-GSKGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGDIGWIA 363
            ++D + +EV P  G  G +   G  V  GY+K+P  T +   E DG  +   GD   + 
Sbjct: 199 VVLDEDGSEVPPGSGEVGWIARGGR-VPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVE 257

Query: 364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 423
                       G + L GR    I  + GE V P E+EEA      +   +V+G    R
Sbjct: 258 A----------DGTITLLGRGSVCIN-TGGEKVFPEEVEEALKAHPDVADALVVGVPDER 306

Query: 424 PGAIIV----------PDKEEVL 436
            G  +V           D  E+ 
Sbjct: 307 WGQRVVAVVQLRAGAGLDLAELR 329

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 33/167 (19%)

Query: 296 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDGW 353
           GSVG  +    + I D + NE LPAG  G V     ++   Y  +P  T  A       W
Sbjct: 323 GSVGRSVLGD-LHICDDDGNE-LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFW 380

Query: 354 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ 413
              GD+G +             G L L  R K  +++S G N+ P E E A      +  
Sbjct: 381 TTVGDLGSVDED----------GYLYLADR-KSFMIISGGVNIYPQETENALTMHPAVHD 429

Query: 414 IVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADA-----SELSKE 455
           + VIG          VPD E   M  +  +++          EL++E
Sbjct: 430 VAVIG----------VPDPE---MGEQVKAVIQLVEGIRGSDELARE 463

Length = 501

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 21/126 (16%)

Query: 296 GSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN 355
           G++G  +   EI++V A        G +G + VRG  + +GY+  P +    +  +GWL+
Sbjct: 313 GTLGRVLPPYEIRVV-APDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSP---VANEGWLD 368

Query: 356 TGDIGWIAPHHSRGRSRRC---GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR 412
           T             R R C    G +    RA DT V+  G NV+P E+E   +    + 
Sbjct: 369 T-------------RDRVCIDSDGWVTYRCRADDTEVIG-GVNVDPREVERLIIEDEAVA 414

Query: 413 QIVVIG 418
           +  V+ 
Sbjct: 415 EAAVVA 420

Length = 705

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 55  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-YDIVPAENGDKFLSMLPPWH 111
               DDIA   Y+SG+T  P+GV++TH+ L+  +R++ +D +    GD+ +S LP +H
Sbjct: 172 RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYH 229

Length = 579

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 57   GSDDIATYVYTSGTTGNPKGVMLTHKNLL 85
            G D++A  +YTSG+TG PKGVM+  + +L
Sbjct: 3867 GPDNLAYVIYTSGSTGLPKGVMVEQRGML 3895

Length = 4334

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 23/150 (15%)

Query: 299 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA--LDEDG--WL 354
           G P+ + +  ++D +  +  P    G + + G  V  GY+ +P  T +       G    
Sbjct: 303 GKPLPNQKFYVLDEDGRDC-PDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLY 361

Query: 355 NTGDIGWIAPHHSRGRSRRCGGVLVLE--GRAKDTIVLSTGENVEPLELEEAALRSSLIR 412
            TGD          GR R  G    +E  GR  D  V   G  VE  E+E A  R   ++
Sbjct: 362 RTGD---------LGRYRPDG---TIEFLGR-ADHQVKIRGYRVELGEIEAALARHPGVQ 408

Query: 413 QIVVIGQDQRRP---GAIIVPDKEEVLMAA 439
           + VV+           A +V +    + AA
Sbjct: 409 RAVVVVVGDGGAKALAAFVVAEDGAAVDAA 438

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 60  DIATYVYTSGTTGNPKGVMLTHKNLL 85
           D A Y+YTSGTTG PK  +++H+  L
Sbjct: 82  DPAFYIYTSGTTGLPKAAIMSHRRWL 107

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 13/65 (20%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLL----HQIRSLYDIVPAENGDKFL------SMLP 108
           DD A  +YTSGTTG PKG + TH          I   +D+ P   GD+ L       M+ 
Sbjct: 100 DDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKP---GDRLLWITDMGWMMG 156

Query: 109 PWHVY 113
           PW V 
Sbjct: 157 PWLVL 161

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)

Query: 41   FSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHK---NLLHQIRSLYDIVPA 97
            F   + A +      +  D++A  +YTSG+TG PKGV ++H    N LH     Y++ P 
Sbjct: 4682 FPAHDPAVR------LHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPD 4735

Query: 98   E 98
            +
Sbjct: 4736 D 4736

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 29/183 (15%)

Query: 275  GYGLTESSPVIAARR-PTCNVLGS----VGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 329
            GYG TE++  +   +    +  G+    +G P+ +    ++D + N  LP G  G + + 
Sbjct: 4841 GYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDGQLN-PLPVGVAGELYLG 4899

Query: 330  GSQVMQGYFKNPSATKQ-----ALDEDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEG 382
            G  V +GY + P+ T +          G     TGD+       +R R+    GV+   G
Sbjct: 4900 GEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDL-------ARYRA---DGVIDYLG 4949

Query: 383  RAKDTIVLSTGENVEPLELEEAALRS-SLIRQIVVIGQD---QRRPGAIIVPDKEEVLMA 438
            R  D  V   G  +E  E+ EA LR    +R+ VVI Q+    ++    +VP    +  A
Sbjct: 4950 RV-DHQVKIRGFRIELGEI-EARLREHPAVREAVVIAQEGAVGKQLVGYVVPQDPALADA 5007

Query: 439  AKR 441
             + 
Sbjct: 5008 DEA 5010

Length = 5163

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 14/138 (10%)

Query: 283 PVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPS 342
            V +  +P+   L   G  +   ++ IV+ +T  +      G + V  S     Y+    
Sbjct: 340 RVDSEDKPSSLPLQDSGMVMPGAQMCIVNPDTPPLCRTDEIGEIWVNSSANATSYYGLTG 399

Query: 343 ATKQALD-----------EDGWLNTGDIGWIAP-HHSRGRSRRCGGVLVLEGRAKDTIVL 390
            TK   +           E+ ++ TG +G++ P  HS G     G + V+ G   +T+ +
Sbjct: 400 MTKNTFEVFPNSSSDGIGENPYVRTGLLGFVGPTSHSMGPVVDMGLLFVV-GSIDETLEV 458

Query: 391 STGENVEPLELEEAALRS 408
           S G    P ++E   LR 
Sbjct: 459 S-GLRHNPDDIEATVLRV 475

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	495
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	100.0
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.96
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.85
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.78
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.61
PRK09188	365	serine/threonine protein kinase; Provisional	99.6
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.32
KOG3628	1363	consensus Predicted AMP-binding protein [General f	98.88
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	98.63
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.58
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.31
PLN02247	606	indole-3-acetic acid-amido synthetase	98.22
PLN02249	597	indole-3-acetic acid-amido synthetase	98.05
PLN02620	612	indole-3-acetic acid-amido synthetase	98.04
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	88.85

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-69  Score=543.95  Aligned_cols=442  Identities=34%  Similarity=0.525  Sum_probs=378.3

Q ss_pred             CeEEEEEeCCCCCCCCc-ccCCcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhhh
Q 011011            1 MRFIILLWGKKSSVAPD-IVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVML   79 (495)
Q Consensus         1 ~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~   79 (495)
                      ||.||++++..++.... ...++++.+|+|++++|......          .+ .++.|+|.|.|+|||||||.|||||+
T Consensus       207 LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~----------~~-~~p~p~d~atI~yTSGTTG~PKGVML  275 (691)
T KOG1256|consen  207 LKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRK----------PR-VPPKPDDLATICYTSGTTGNPKGVML  275 (691)
T ss_pred             ceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCC----------CC-CCCCccceEEEEEcCCCCCCCceEEE
Confidence            68899999987765544 34479999999999999854321          12 46789999999999999999999999


Q ss_pred             chHHHHHHHHHh---hccc---CCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--chHhHHHHHhHhCCcEEEeC
Q 011011           80 THKNLLHQIRSL---YDIV---PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISV  151 (495)
Q Consensus        80 th~~l~~~~~~~---~~~~---~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--~~~~~~~~i~~~~~t~~~~~  151 (495)
                      ||+|+++.++.+   ....   .....|++++++|++|++.++.....+..|+.+.+.  ++..+.+++++.+||++.++
T Consensus       276 TH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~V  355 (691)
T KOG1256|consen  276 THRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGV  355 (691)
T ss_pred             eccceeehhhhhhhhhhcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEecc
Confidence            999998855432   1111   123469999999999999999988888999999885  78999999999999999999


Q ss_pred             chHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHH
Q 011011          152 PLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLL  231 (495)
Q Consensus       152 P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  231 (495)
                      |.+|+++++.++....++..+++.++..+....+    .++...|...                           ....+
T Consensus       356 PRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~----~~~~~~G~~~---------------------------~~~~~  404 (691)
T KOG1256|consen  356 PRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKL----EHRLMKGKSR---------------------------SRDRF  404 (691)
T ss_pred             HhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH----HHHhhCCCCc---------------------------ccchH
Confidence            9999999999999998888788777766554433    1223333221                           12457


Q ss_pred             HHHHHHHHHHhhcCC-ceEEEeccCCCChhHHHHHHH-cCCeeeeccCcccCccceeccCCCCCCccccccCcCCcEEEE
Q 011011          232 AEKLVYKKIQSAIGI-SKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI  309 (495)
Q Consensus       232 ~~~~~~~~~~~~~~~-~~~i~~gg~~l~~~~~~~~~~-~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i  309 (495)
                      +++++++++++.||+ .|.+++|++|+++++..|++. +|+.++++||+||+++.++...+.+...+++|.|+|++++++
T Consensus       405 ~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL  484 (691)
T KOG1256|consen  405 ADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKL  484 (691)
T ss_pred             HHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEE
Confidence            899999999999986 699999999999999999986 579999999999998666666666668899999999999999


Q ss_pred             EeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEE
Q 011011          310 VDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV  389 (495)
Q Consensus       310 ~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~  389 (495)
                      +|+..-+.-+.|..|||||+|+++|+|||+||+.|+++|++|||+||||+|++++          +|.++|+||+|+++|
T Consensus       485 ~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p----------~G~l~IidRkK~ifk  554 (691)
T KOG1256|consen  485 VDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDP----------NGTLKIIDRKKNIFK  554 (691)
T ss_pred             echHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECC----------CccEEEEecccceEE
Confidence            9987777778888999999999999999999999999999999999999999999          899999999999999


Q ss_pred             eCCceeecchHHHHHHhcCcccceEEEEecC-CCeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhH
Q 011011          390 LSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW  468 (495)
Q Consensus       390 ~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  468 (495)
                      +++|++|.|..||++..+.+.|.+.+|.|.+ +..++|+|+|+++.+.+|+.++++.......+...++++.+..+|.++
T Consensus       555 laqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~  634 (691)
T KOG1256|consen  555 LAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLRSFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKV  634 (691)
T ss_pred             cCCCCccChHHHHHHHhcCCceEEEEEECCcchhcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHH
Confidence            9999999999999999999999999999987 678999999999999999998787754444567888899999988888


Q ss_pred             hcc----CCCccccEEEecCCCCCCCCeec
Q 011011          469 TSK----CSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       469 ~~~----~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                      .+.    ..|++++|++.+++|+++||+||
T Consensus       635 ~~~~~l~~fe~vk~v~l~~~~Fsiengllt  664 (691)
T KOG1256|consen  635 GKENGLKGFEQVKKVHLLPDPFSIENGLLT  664 (691)
T ss_pred             HhhhhccChhhEeeEEEecccccccCCccc
Confidence            663    33999999999999999999997

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2.8e-66  Score=529.04  Aligned_cols=391  Identities=38%  Similarity=0.632  Sum_probs=343.1

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccC-CCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEe-c
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-AENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY-T  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~-~  131 (495)
                      ...+||+|.|+|||||||.|||||+||+|+++++..+...+. .+++|++++++|++|++++++ ....+..|.+... .
T Consensus       187 ~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~  266 (613)
T COG1022         187 PPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKE  266 (613)
T ss_pred             CCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecC
Confidence            568999999999999999999999999999999999998886 899999999999999999997 4445666666655 5


Q ss_pred             chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHH
Q 011011          132 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  211 (495)
Q Consensus       132 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  211 (495)
                      +++.+++++++++||+++++|++|+.+.+.+.+...+.+..++.++..+.........  +.                  
T Consensus       267 ~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~--~~------------------  326 (613)
T COG1022         267 DPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKIS--RA------------------  326 (613)
T ss_pred             CHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH--hh------------------
Confidence            8999999999999999999999999999999999888887777777776665322111  10                  


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          212 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                              ..+....+.+..+++++|+++++.+| .+|.+++||+++++++..|++..|++++++||+||+++.++++++
T Consensus       327 --------~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~  398 (613)
T COG1022         327 --------LLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPP  398 (613)
T ss_pred             --------hcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEccc
Confidence                    11111222334589999999999998 479999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCC
Q 011011          291 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  370 (495)
Q Consensus       291 ~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~  370 (495)
                      .....+++|.|+|+++++|.|           .|||+|+||.+|+|||+||++|+++|++||||+|||+|.+++      
T Consensus       399 ~~~~~gtvG~p~p~~evKI~d-----------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~------  461 (613)
T COG1022         399 DRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDE------  461 (613)
T ss_pred             cCcccCCcCCcCCCceEEEcc-----------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcC------
Confidence            999999999999999999998           399999999999999999999999999999999999999999      


Q ss_pred             ccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCeeEEEEecChHHHHHHHHHcCCCcC-Cc
Q 011011          371 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHA-DA  449 (495)
Q Consensus       371 ~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~~~a~vv~~~~~~~~~~~~~~~~~~-~~  449 (495)
                          +|+|+++||+||+|++++|++|.|..||+.+.++|.|.+++|+|..+..++|+|+|+.+.+.+|+..++.... +.
T Consensus       462 ----~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg~~k~~~~AlIvp~~~~l~~~a~~~~~~~~~~~  537 (613)
T COG1022         462 ----DGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDKKFLVALIVPDFDALEKWAESLNKVISASR  537 (613)
T ss_pred             ----CCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEecCCcceEEEEeCCHHHHHHHHHhccccccCCH
Confidence                8999999999999999999999999999999999999999999988899999999999999999998774432 22


Q ss_pred             -cccChHHHHHHHHHHHHhHhccCC--CccccEEEecCCCCCCCCeec
Q 011011          450 -SELSKEKTISLLYGELRKWTSKCS--FQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       450 -~~~~~~~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~  494 (495)
                       +-....++.+.+..++...+....  |++++|.++.++|+.+++++|
T Consensus       538 ~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t  585 (613)
T COG1022         538 EELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELT  585 (613)
T ss_pred             HHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccc
Confidence             334567788888887777655544  999999999999999999987

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-65  Score=494.38  Aligned_cols=438  Identities=28%  Similarity=0.427  Sum_probs=375.0

Q ss_pred             CeEEEEEeCC----CCC-CCCcccCCcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCch
Q 011011            1 MRFIILLWGK----KSS-VAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPK   75 (495)
Q Consensus         1 ~~~~i~~~~~----~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK   75 (495)
                      +|+||+++..    ..+ .+.-..+.+.+++++++++++.....            ++.++.|+|+|+|+|||||||.||
T Consensus       186 vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~------------~~~~P~p~Dia~IMYTSGSTG~PK  253 (678)
T KOG1180|consen  186 VKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEI------------PPHPPKPSDIACIMYTSGSTGLPK  253 (678)
T ss_pred             eeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCC------------CCCCCCCCceEEEEEcCCCCCCCc
Confidence            5899999842    111 11114468999999999999988642            223447899999999999999999


Q ss_pred             hhhhchHHHHHHHHHhhccc-CCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecchHhHHH-----------HHhHh
Q 011011           76 GVMLTHKNLLHQIRSLYDIV-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKD-----------DLQRY  143 (495)
Q Consensus        76 ~v~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~~~~~~~-----------~i~~~  143 (495)
                      ||+++|+|+++.+..+.... .+.+.|+++.++|+.|++.+..-+.++..|+.+-+.++.++.+           ++..+
T Consensus       254 GVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~l  333 (678)
T KOG1180|consen  254 GVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTEL  333 (678)
T ss_pred             eEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccc
Confidence            99999999999888776554 5789999999999999999999999999999999877655543           67889


Q ss_pred             CCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHh
Q 011011          144 QPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICA  223 (495)
Q Consensus       144 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  223 (495)
                      |||+|.++|.+|.++.+.........+.+.+.++........+....+                                
T Consensus       334 kPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~--------------------------------  381 (678)
T KOG1180|consen  334 KPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERN--------------------------------  381 (678)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhcc--------------------------------
Confidence            999999999999999999999888888887776665554433322110                                


Q ss_pred             hhhhhHHHHHHHHHHHHHhhcCC-ceEEEeccCCCChhHHHHHHH-cCCeeeeccCcccCccceeccCCCCCCccccccC
Q 011011          224 ILWPLHLLAEKLVYKKIQSAIGI-SKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP  301 (495)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~gg~~l~~~~~~~~~~-~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p  301 (495)
                        -+-..+.+.++|++++..+|+ +|.+++||++++++.++|+.. +.+++.++||.||+++..+...+.+...+.+|.|
T Consensus       382 --g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~p  459 (678)
T KOG1180|consen  382 --GPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAP  459 (678)
T ss_pred             --CCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCC
Confidence              122457899999999999985 799999999999999999986 5889999999999999988888888888999999


Q ss_pred             cCCcEEEEEeCCCCCcCCCCC--ccEEEEccCCcchhccCCchhhhhccCC-CC--ccccCceeeeccCCCCCCccccCC
Q 011011          302 INHTEIKIVDAETNEVLPAGS--KGIVKVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGDIGWIAPHHSRGRSRRCGG  376 (495)
Q Consensus       302 ~~~~~v~i~d~~~~~~~~~g~--~GEl~v~~p~~~~gY~~~~~~t~~~~~~-~~--~~~TGDl~~~~~~~~~~~~~~~~G  376 (495)
                      ++.++++++|.+.+...+.+.  .||||++|+++..|||+||+.|++.|.. ||  ||+|||+|++.+          ||
T Consensus       460 l~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~p----------dG  529 (678)
T KOG1180|consen  460 LPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHP----------DG  529 (678)
T ss_pred             ccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecC----------CC
Confidence            999999999987665555444  8999999999999999999999999987 88  999999999999          89


Q ss_pred             eEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC-CCeeEEEEecChHHHHHHHHHcCCCcCCccc-cCh
Q 011011          377 VLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASE-LSK  454 (495)
Q Consensus       377 ~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~-~~~  454 (495)
                      .|.|++|+||.+|+.+|++|+++.+|++++..|.|.+.+|++.+ +..++++|||+...+..++++.|+......+ +..
T Consensus       530 ~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d  609 (678)
T KOG1180|consen  530 CLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNKSKPVAIVVPNQKHLTKLAEKAGISGSTWEELCED  609 (678)
T ss_pred             cEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEecccccceeEEEEcCCchHHHHHHHHcCCChhhHHHHhcc
Confidence            99999999999999999999999999999999999999999986 5679999999999999999999998865444 467


Q ss_pred             HHHHHHHHHHHHhHhccCC----CccccEEEecCCCCCCCCeec
Q 011011          455 EKTISLLYGELRKWTSKCS----FQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       455 ~~l~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~  494 (495)
                      .++.+.+...|.+......    |.+.+|.+++++|+.|||.+|
T Consensus       610 ~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT  653 (678)
T KOG1180|consen  610 KKVVKAVLKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVT  653 (678)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccceeEecCCCcCCCccccH
Confidence            8889999998888875544    788999999999999999987

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=4.2e-61  Score=514.62  Aligned_cols=419  Identities=28%  Similarity=0.473  Sum_probs=328.3

Q ss_pred             cceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhccc-----C
Q 011011           22 IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV-----P   96 (495)
Q Consensus        22 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~-----~   96 (495)
                      +.+.+++++++.+....            .+.....++|+++|+|||||||.||||++||+|+...+......+     +
T Consensus       198 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~  265 (666)
T PLN02614        198 LVIYAWDEFLKLGEGKQ------------YDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAA  265 (666)
T ss_pred             cEEEEHHHHHhhcccCC------------CCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccC
Confidence            44567887766442111            011234689999999999999999999999999987766543332     5


Q ss_pred             CCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHH
Q 011011           97 AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR  174 (495)
Q Consensus        97 ~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  174 (495)
                      +.++|++++++|++|++++...+..+..|+++++.  ++..+++.+++++||+++++|++|..++............+++
T Consensus       266 ~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~  345 (666)
T PLN02614        266 LTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKK  345 (666)
T ss_pred             CCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHH
Confidence            67899999999999999987666667889998874  6889999999999999999999999998776554433333333


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceEEEec
Q 011011          175 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSG  253 (495)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~g  253 (495)
                      .++.......+..     ...+..                          ....+.+.+++.++++++.++ .+|.+++|
T Consensus       346 ~~~~~a~~~~~~~-----~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~lg~~lr~~~~G  394 (666)
T PLN02614        346 FVFDSAFSYKFGN-----MKKGQS--------------------------HVEASPLCDKLVFNKVKQGLGGNVRIILSG  394 (666)
T ss_pred             HHHHHHHHHHHHH-----HHcCCC--------------------------CcccchHHHHHHHHHHHHHhCCcEEEEEEc
Confidence            3332222211100     000000                          000122345666777777774 68999999


Q ss_pred             cCCCChhHHHHHHHc-CCeeeeccCcccCccceeccCCCC-CCccccccCcCCcEEEEEeC-C-CCCcCCCCCccEEEEc
Q 011011          254 GGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPINHTEIKIVDA-E-TNEVLPAGSKGIVKVR  329 (495)
Q Consensus       254 g~~l~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~v~i~d~-~-~~~~~~~g~~GEl~v~  329 (495)
                      |+++++++.++.+.+ +++++++||+||++...+...+.. ...+++|+|+|+++++|+|. + .++++++|+.|||+|+
T Consensus       395 ga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vr  474 (666)
T PLN02614        395 AAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIR  474 (666)
T ss_pred             CCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEc
Confidence            999999888888887 489999999999876554433322 35689999999999999983 3 2468899999999999


Q ss_pred             cCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCc
Q 011011          330 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  409 (495)
Q Consensus       330 ~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p  409 (495)
                      ||+++.|||++|+.|+++|. +|||+|||+|++++          ||+|+|+||+||+||+++|++|+|.+||++|.+||
T Consensus       475 Gp~v~~GY~~~pe~T~~~f~-dGw~~TGDlg~~d~----------dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p  543 (666)
T PLN02614        475 GKTLFSGYYKREDLTKEVLI-DGWLHTGDVGEWQP----------NGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQ  543 (666)
T ss_pred             CCcccccccCCHHHhhhhhc-cCCcccceEEEEcC----------CCCEEEEEcchhceecCCCeeecHHHHHHHHhcCC
Confidence            99999999999999999994 89999999999999          89999999999999976899999999999999999


Q ss_pred             ccceEEEEecC-CCeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHh--c--cCCCccccEEEecC
Q 011011          410 LIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWT--S--KCSFQIGPIHVVDE  484 (495)
Q Consensus       410 ~V~~~~vvg~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~--~--~~~~~~~~~~~~~~  484 (495)
                      .|.+|+|+|.+ ++.++|+|+++.+.+.+|++++++.......+..+++++.+.+.+.+..  .  +..|+|++|+++++
T Consensus       544 ~V~~~~V~g~~~~~~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~  623 (666)
T PLN02614        544 AVDSVWVYGNSFESFLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPV  623 (666)
T ss_pred             CeeEEEEEecCCcceEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCC
Confidence            99999999998 5789999999999999999998876422233466788888888876652  2  23389999999999


Q ss_pred             CCCCCCCeec
Q 011011          485 PFTVNFLCLA  494 (495)
Q Consensus       485 ~~~~~~~~l~  494 (495)
                      +|+++||+||
T Consensus       624 ~f~~~ng~lT  633 (666)
T PLN02614        624 PFDMERDLLT  633 (666)
T ss_pred             CCCCcCCcCC
Confidence            9999999997

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.7e-60  Score=504.05  Aligned_cols=394  Identities=28%  Similarity=0.386  Sum_probs=320.7

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhccc--CCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV--PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~--~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~  131 (495)
                      ...+++|+++|+|||||||.||||++||+|+.+.+.......  ...+.|++++++|++|++++...+.++..|+++++.
T Consensus       299 ~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~  378 (746)
T PTZ00342        299 QNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTINIW  378 (746)
T ss_pred             CCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEEEEe
Confidence            345789999999999999999999999999988776543321  233568999999999999998877889999999874


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..++++|++++||+++++|++|..++..+.......+.+++.++..++.......      .+.            
T Consensus       379 ~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~------~~~------------  440 (746)
T PTZ00342        379 SKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNN------NGG------------  440 (746)
T ss_pred             CCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhh------cCC------------
Confidence              689999999999999999999999999998777666666666666655554332210      000            


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHH--HHHHHHhhcC-CceEEEeccCCCChhHHHHHH-HcCCeeeeccCcccCccce
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKL--VYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTESSPVI  285 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~i~~gg~~l~~~~~~~~~-~~g~~v~~~YG~TE~~~~~  285 (495)
                                        .+.+.+++  +++++++.++ .+|.+++||+++++++.++++ .+|++++++||+||+++..
T Consensus       441 ------------------~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~  502 (746)
T PTZ00342        441 ------------------FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPI  502 (746)
T ss_pred             ------------------cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCccccee
Confidence                              00111221  5677777775 579999999999999976665 6899999999999998766


Q ss_pred             eccCCCCCCccccccCc-CCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeecc
Q 011011          286 AARRPTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  364 (495)
Q Consensus       286 ~~~~~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~  364 (495)
                      +...+.....+++|.|+ |+++++|+|.+++...+.+..|||+++||++|.|||++|+.|+++|+.||||+|||+|++++
T Consensus       503 ~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~  582 (746)
T PTZ00342        503 FVQHADDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINK  582 (746)
T ss_pred             eeccCCCCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECC
Confidence            66555556778999998 99999999866555555566899999999999999999999999998899999999999999


Q ss_pred             CCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC-CCeeEEEEecChHHHHHHHHHcC
Q 011011          365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLS  443 (495)
Q Consensus       365 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~-~~~~~a~vv~~~~~~~~~~~~~~  443 (495)
                                +|+++|+||+||+|++++|++|+|.+||+++.+||.|.+|+|+|.+ .+.+.|+|+++++.+.+|+++.+
T Consensus       583 ----------dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~~~~~Alvv~d~~~~~~~a~~~~  652 (746)
T PTZ00342        583 ----------NGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSMDGPLAIISVDKYLLFKCLKDDN  652 (746)
T ss_pred             ----------CCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCccccEEEEECCHHHHHHHHHhcC
Confidence                      8999999999999998789999999999999999999999999976 45899999999999999998754


Q ss_pred             ------CCcCCcc------ccChHHHHHHHHHHHHhHhc----cCCCccccEEEecCCCCCCCCeec
Q 011011          444 ------IVHADAS------ELSKEKTISLLYGELRKWTS----KCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       444 ------~~~~~~~------~~~~~~l~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                            +......      .+...++++.+.+.+.+...    +..|+|++|++++++|++ ||+||
T Consensus       653 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~-~~~lT  718 (746)
T PTZ00342        653 MLESTGINEKNYLEKLTDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDT-NNYLT  718 (746)
T ss_pred             CccccccCcccHHHHhhhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCC-CCccC
Confidence                  3322211      23456778888988888722    233999999999999999 56886

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=5.7e-59  Score=500.58  Aligned_cols=443  Identities=27%  Similarity=0.387  Sum_probs=339.8

Q ss_pred             CeEEEEEeCCCCCCCC--cccCCcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhh
Q 011011            1 MRFIILLWGKKSSVAP--DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVM   78 (495)
Q Consensus         1 ~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~   78 (495)
                      +++||++++.......  .....+.+.+++++...+.....            +.....++|+++|+|||||||.||||+
T Consensus       202 l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~dd~a~I~yTSGTTG~PKGV~  269 (696)
T PLN02387        202 VKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPV------------DPDLPSPNDIAVIMYTSGSTGLPKGVM  269 (696)
T ss_pred             ceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCC------------CCCCCCccceEEEEecCCCCCCCCEEE
Confidence            3567777653221110  01234567789888876543211            112346899999999999999999999


Q ss_pred             hchHHHHHHHHHhhcc-cCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecch-----------HhHHHHHhHhCCc
Q 011011           79 LTHKNLLHQIRSLYDI-VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV-----------RNLKDDLQRYQPH  146 (495)
Q Consensus        79 ~th~~l~~~~~~~~~~-~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~~-----------~~~~~~i~~~~~t  146 (495)
                      +||+++.+.+...... .++.++|++++++|++|++++...+..+..|+++.+.++           ..++.++++++||
T Consensus       270 lth~~l~~~~~~~~~~~~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT  349 (696)
T PLN02387        270 MTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPT  349 (696)
T ss_pred             EEcHHHHHHHHHHHhhcCCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCc
Confidence            9999998877765444 357889999999999999999876666777777766432           2345689999999


Q ss_pred             EEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhh
Q 011011          147 YMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILW  226 (495)
Q Consensus       147 ~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  226 (495)
                      ++.++|+++..+.+...........+.+.++..+.......      ..+...     .+                  ..
T Consensus       350 ~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~------~~~~~~-----~~------------------~~  400 (696)
T PLN02387        350 LMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAA------IEGSWF-----GA------------------WG  400 (696)
T ss_pred             EEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH------hccCCc-----cc------------------cc
Confidence            99999999999988766544444444444443333211110      000000     00                  00


Q ss_pred             hhHHHHHHHHHHHHHhhcC-CceEEEeccCCCChhHHHHHHH-cCCeeeeccCcccCccceeccCCCCCCccccccCcCC
Q 011011          227 PLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINH  304 (495)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~-~~~~i~~gg~~l~~~~~~~~~~-~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~  304 (495)
                      ..+.+.+.+.+++++..+| .+|.+++||+++++++.++++. +|++++++||+||+++.++.........+++|.|+|+
T Consensus       401 ~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~  480 (696)
T PLN02387        401 LEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPC  480 (696)
T ss_pred             ccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCc
Confidence            1133567778888888884 6899999999999999888774 7999999999999987776655555567899999999


Q ss_pred             cEEEEEeC-CCCCcC--CCCCccEEEEccCCcchhccCCchhhhhccC--CCC--ccccCceeeeccCCCCCCccccCCe
Q 011011          305 TEIKIVDA-ETNEVL--PAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDG--WLNTGDIGWIAPHHSRGRSRRCGGV  377 (495)
Q Consensus       305 ~~v~i~d~-~~~~~~--~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~--~~~--~~~TGDl~~~~~~~~~~~~~~~~G~  377 (495)
                      ++++|+|+ +.+..+  .++..|||+|+||+++.|||+||+.|+++|.  .+|  ||+|||+|++++          +|+
T Consensus       481 ~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~----------dG~  550 (696)
T PLN02387        481 CYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHP----------DGC  550 (696)
T ss_pred             eEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECC----------CCc
Confidence            99999994 433332  3445799999999999999999999999984  345  999999999999          899


Q ss_pred             EEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC-CCeeEEEEecChHHHHHHHHHcCCCcCCccc-cChH
Q 011011          378 LVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASE-LSKE  455 (495)
Q Consensus       378 l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~  455 (495)
                      ++|+||+||+||+++|++|+|.+||++|.+||.|.+|+|+|.+ ++.++|+|+++++.+..|+++.++......+ +...
T Consensus       551 l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~  630 (696)
T PLN02387        551 LEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFHSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKE  630 (696)
T ss_pred             EEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCcceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCH
Confidence            9999999999998679999999999999999999999999998 6789999999999999999998876543333 4567


Q ss_pred             HHHHHHHHHHHhHhcc----CCCccccEEEecCCCCCCCCeec
Q 011011          456 KTISLLYGELRKWTSK----CSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       456 ~l~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                      ++++.+.+.+.+....    ..|+|++|++++++|+++||+||
T Consensus       631 ~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT  673 (696)
T PLN02387        631 EAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVT  673 (696)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCC
Confidence            8888888888887432    22899999999999999999987

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=7.4e-59  Score=497.58  Aligned_cols=418  Identities=28%  Similarity=0.447  Sum_probs=326.4

Q ss_pred             cceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccC-----
Q 011011           22 IPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-----   96 (495)
Q Consensus        22 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~-----   96 (495)
                      +..++++++...+...             .+.....++|+++|+|||||||.||||++||+++...+......++     
T Consensus       196 ~~~~~~~~~~~~~~~~-------------~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~  262 (660)
T PLN02861        196 VSCFSWEEFSLMGSLD-------------CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRV  262 (660)
T ss_pred             cEEEEHHHHHHhCccc-------------CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhcccccccc
Confidence            4456777776543211             0112346899999999999999999999999999887666544433     


Q ss_pred             CCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHH
Q 011011           97 AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR  174 (495)
Q Consensus        97 ~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  174 (495)
                      +.++|++++++|++|++++...+.++..|+++++.  ++..+++.+++++||+++++|++|..++............+++
T Consensus       263 ~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~  342 (660)
T PLN02861        263 ATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRK  342 (660)
T ss_pred             CCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHH
Confidence            46789999999999999987766678999998774  6889999999999999999999999999877766655556666


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceEEEec
Q 011011          175 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSG  253 (495)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~g  253 (495)
                      .++..+.........     .+...                          .......+++.++++++.++ .+|.+++|
T Consensus       343 ~l~~~a~~~~~~~~~-----~~~~~--------------------------~~~~~~~~~~~~~~~r~~lg~~lr~~~~G  391 (660)
T PLN02861        343 KLFDFAYNYKLGNLR-----KGLKQ--------------------------EEASPRLDRLVFDKIKEGLGGRVRLLLSG  391 (660)
T ss_pred             HHHHHHHHHHHHHHh-----cCCCC--------------------------cCccHhHHHHHHHHHHHHhCCcEEEEEEC
Confidence            555554443322110     00000                          00011235556777778885 67999999


Q ss_pred             cCCCChhHHHHHHHcCC-eeeeccCcccCccceeccCCC-CCCccccccCcCCcEEEEEeC-CCC-CcCCCCCccEEEEc
Q 011011          254 GGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDA-ETN-EVLPAGSKGIVKVR  329 (495)
Q Consensus       254 g~~l~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~-~~~-~~~~~g~~GEl~v~  329 (495)
                      |+++++++.++.+.++. +++++||+||+++.++..... ....+++|+|+++++++|+|. +.+ ..+++++.|||+++
T Consensus       392 gapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vr  471 (660)
T PLN02861        392 AAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLR  471 (660)
T ss_pred             CCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEc
Confidence            99999999888887764 799999999987655543322 234689999999999999983 333 34456678999999


Q ss_pred             cCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCc
Q 011011          330 GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  409 (495)
Q Consensus       330 ~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p  409 (495)
                      ||+++.|||++|+.|+++|. +|||+|||+|++++          ||+++|+||+||+|++++|++|+|.+||+++.+||
T Consensus       472 Gp~v~~GY~~~pe~T~~~f~-dGw~~TGDlg~~d~----------dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p  540 (660)
T PLN02861        472 GNTLFSGYHKRQDLTEEVLI-DGWFHTGDIGEWQP----------NGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCP  540 (660)
T ss_pred             CCcccccccCCHHHHHhhhh-ccCcccCceEEECC----------CCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCC
Confidence            99999999999999999994 89999999999999          89999999999999987899999999999999999


Q ss_pred             ccceEEEEecCC-CeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhc----cCCCccccEEEecC
Q 011011          410 LIRQIVVIGQDQ-RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTS----KCSFQIGPIHVVDE  484 (495)
Q Consensus       410 ~V~~~~vvg~~~-~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~----~~~~~~~~~~~~~~  484 (495)
                      .|.+|+|+|.+. +.+.|+||++.+.+.+|++++++.......+...+++..+.+.+.+.+.    +..++|++|.+.++
T Consensus       541 ~V~~a~V~G~~~~~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~  620 (660)
T PLN02861        541 LIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPN  620 (660)
T ss_pred             CeeEEEEEecCCcceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCC
Confidence            999999999984 6799999999999999999886532111122334566666666766533    33489999999999


Q ss_pred             CCCCCCCeec
Q 011011          485 PFTVNFLCLA  494 (495)
Q Consensus       485 ~~~~~~~~l~  494 (495)
                      +|+++||+||
T Consensus       621 ~ft~~ng~lT  630 (660)
T PLN02861        621 PFDIERDLIT  630 (660)
T ss_pred             CCCcccCcCC
Confidence            9999999997

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.7e-58  Score=492.46  Aligned_cols=420  Identities=30%  Similarity=0.473  Sum_probs=336.2

Q ss_pred             CcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcc-----c
Q 011011           21 EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI-----V   95 (495)
Q Consensus        21 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~-----~   95 (495)
                      ++..++|+++...+.....            ......++|+++|+|||||||.||||++||+++...+......     .
T Consensus       194 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~  261 (660)
T PLN02430        194 GVKTYSWIDFLHMGKENPS------------ETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFED  261 (660)
T ss_pred             CcEEEEHHHHHHhhccCCC------------CCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhcccccc
Confidence            4556788888766543211            1123468999999999999999999999999998776654321     2


Q ss_pred             CCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHH
Q 011011           96 PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAAR  173 (495)
Q Consensus        96 ~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  173 (495)
                      ++.++|++++++|++|++++...+..+..|+++++.  ++..+++++++++||++.++|++|..+.+............+
T Consensus       262 ~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~  341 (660)
T PLN02430        262 KMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRR  341 (660)
T ss_pred             CCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHH
Confidence            467889999999999999988776778889998764  688899999999999999999999999988776655555555


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceEEEe
Q 011011          174 RVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVS  252 (495)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~  252 (495)
                      +.++..+.........     .+..                          ......+.+.+.++++++.+| .+|.+++
T Consensus       342 ~~~~~~~~~~~~~~~~-----~~~~--------------------------~~~~~~~~d~l~~~~i~~~~G~~lr~~~~  390 (660)
T PLN02430        342 RLIFNALYKYKLAWMN-----RGYS--------------------------HKKASPMADFLAFRKVKAKLGGRLRLLIS  390 (660)
T ss_pred             HHHHHHHHHHHHHHHh-----cCCC--------------------------CCCcchhHHHHHHHHHHHHhCCeEEEEEE
Confidence            5555554443322210     0000                          000122456677888888885 5899999


Q ss_pred             ccCCCChhHHHHHHHcC-CeeeeccCcccCccceeccCCCC-CCccccccCcCCcEEEEEeC-CCC-CcCCCCCccEEEE
Q 011011          253 GGGSLPMHIDLFYEAIG-VKVQVGYGLTESSPVIAARRPTC-NVLGSVGHPINHTEIKIVDA-ETN-EVLPAGSKGIVKV  328 (495)
Q Consensus       253 gg~~l~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~-~~~~~~G~p~~~~~v~i~d~-~~~-~~~~~g~~GEl~v  328 (495)
                      ||+++++++.++++.++ ++++++||+||+++..+...+.. ...+++|.|.+++++++.|. +.+ .+++.+..|||+|
T Consensus       391 gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~v  470 (660)
T PLN02430        391 GGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICV  470 (660)
T ss_pred             CCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEe
Confidence            99999999988888775 67999999999987666544332 34689999999999999873 333 4566677899999


Q ss_pred             ccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcC
Q 011011          329 RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS  408 (495)
Q Consensus       329 ~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~  408 (495)
                      +||+++.|||++|+.|+++| .+|||+|||+|++++          +|+++|.||+||+|++++|++|+|.+||+++.+|
T Consensus       471 rg~~v~~GY~~~~e~t~~~~-~dGw~~TGDig~~d~----------dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~  539 (660)
T PLN02430        471 RGKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILP----------NGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQN  539 (660)
T ss_pred             cCCCccccccCChHHhhhhh-hccceeccceEEECC----------CCcEEEEEcccccEEcCCCcEEchHHHHHHHhcC
Confidence            99999999999999999999 589999999999998          8999999999999998789999999999999999


Q ss_pred             cccceEEEEecC-CCeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhc----cCCCccccEEEec
Q 011011          409 SLIRQIVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTS----KCSFQIGPIHVVD  483 (495)
Q Consensus       409 p~V~~~~vvg~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~----~~~~~~~~~~~~~  483 (495)
                      |.|.+|+|+|.+ .+.++|+|+++++.+.+|+++.++..........+++++.+.+.+.+.+.    +..++|++|.+.+
T Consensus       540 p~V~~~~V~G~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~  619 (660)
T PLN02430        540 PIVEDIWVYGDSFKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILET  619 (660)
T ss_pred             CCeeEEEEEecCCcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEEC
Confidence            999999999976 57899999999999999999988764322334668889999998888843    2238999999999


Q ss_pred             CCCCCCCCeec
Q 011011          484 EPFTVNFLCLA  494 (495)
Q Consensus       484 ~~~~~~~~~l~  494 (495)
                      ++|+++||+||
T Consensus       620 ~~~~~~~g~lT  630 (660)
T PLN02430        620 KPFDVERDLVT  630 (660)
T ss_pred             CCCCCcCCcCC
Confidence            99999999997

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=8.9e-58  Score=489.77  Aligned_cols=418  Identities=29%  Similarity=0.457  Sum_probs=331.5

Q ss_pred             CcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCC
Q 011011           21 EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG  100 (495)
Q Consensus        21 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~  100 (495)
                      .+...+++++.+.+....            .+.....++|+++|+|||||||.||||++||+++...+......+++.++
T Consensus       195 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~  262 (651)
T PLN02736        195 GVEIVTYSKLLAQGRSSP------------QPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPS  262 (651)
T ss_pred             CcEEEEHHHHHHhcccCC------------CCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCC
Confidence            356678888776543211            11224578999999999999999999999999999888887777888999


Q ss_pred             cEEEEECChhhHHHHHHhHhHhhcCceEEec--chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHH
Q 011011          101 DKFLSMLPPWHVYERACGYFIFSRGIELMYT--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVAR  178 (495)
Q Consensus       101 d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  178 (495)
                      |++++++|++|++++...+.++..|+++++.  ++..+++.+++++||+++++|+++..++..........+.+++.+..
T Consensus       263 d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~  342 (651)
T PLN02736        263 DVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFN  342 (651)
T ss_pred             CEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            9999999999999998777788999998875  57889999999999999999999999988776655555555544443


Q ss_pred             HHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceEEEeccCCC
Q 011011          179 ALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSL  257 (495)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~gg~~l  257 (495)
                      .+......     .+..+.       .|                      ....+++.+.+++..++ .+|.+++||+++
T Consensus       343 ~~~~~~~~-----~~~~~~-------~~----------------------~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l  388 (651)
T PLN02736        343 AAYNAKKQ-----ALENGK-------NP----------------------SPMWDRLVFNKIKAKLGGRVRFMSSGASPL  388 (651)
T ss_pred             HHHHHHHH-----HHHcCC-------CC----------------------CchHHHHHHHHHHHHhcCcEEEEEeCCCCC
Confidence            32222110     000000       00                      01224455566666775 689999999999


Q ss_pred             ChhHHHHH-HHcCCeeeeccCcccCccceeccCCCCCCccccccCcCCcEEEEEeCCCCCc---CCCCCccEEEEccCCc
Q 011011          258 PMHIDLFY-EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEV---LPAGSKGIVKVRGSQV  333 (495)
Q Consensus       258 ~~~~~~~~-~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~---~~~g~~GEl~v~~p~~  333 (495)
                      ++++.+++ +.+|++++++||+||+++.++.........+++|+|+|+++++|+|.+.+..   ..++..|||+++||++
T Consensus       389 ~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v  468 (651)
T PLN02736        389 SPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPII  468 (651)
T ss_pred             CHHHHHHHHHHhCCCeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCcc
Confidence            99985555 4689999999999999877665555555678999999999999998543322   2334579999999999


Q ss_pred             chhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccce
Q 011011          334 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ  413 (495)
Q Consensus       334 ~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~  413 (495)
                      +.|||++|+.|+++|+.+|||+|||+|++++          ||+++|+||+||+|++++|++|+|.+||++|.+||.|.+
T Consensus       469 ~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~----------dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~  538 (651)
T PLN02736        469 FKGYYKDEVQTREVIDEDGWLHTGDIGLWLP----------GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQ  538 (651)
T ss_pred             ccccccCHHHHHhhhccCCCeeccceEEEcC----------CCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeE
Confidence            9999999999999998899999999999999          899999999999999868999999999999999999999


Q ss_pred             EEEEecC-CCeeEEEEecChHHHHHHHHHcCCCcCCccc-cChHHHHHHHHHHHHhHhcc----CCCccccEEEecCCCC
Q 011011          414 IVVIGQD-QRRPGAIIVPDKEEVLMAAKRLSIVHADASE-LSKEKTISLLYGELRKWTSK----CSFQIGPIHVVDEPFT  487 (495)
Q Consensus       414 ~~vvg~~-~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~  487 (495)
                      |+|+|.. .+.+.|+||++++.+.+|+++.++......+ +..+++++.+.+.+.+++..    ..++|++|.+++++|+
T Consensus       539 a~V~g~~~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  618 (651)
T PLN02736        539 CFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFT  618 (651)
T ss_pred             EEEEecCCCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCc
Confidence            9999975 4679999999999999999888765332222 34567888888888876432    2289999999999999


Q ss_pred             CCCCeec
Q 011011          488 VNFLCLA  494 (495)
Q Consensus       488 ~~~~~l~  494 (495)
                      ++||++|
T Consensus       619 ~~~~~lT  625 (651)
T PLN02736        619 VENGLLT  625 (651)
T ss_pred             CCCCcCC
Confidence            9999987

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.4e-59  Score=474.55  Aligned_cols=332  Identities=31%  Similarity=0.479  Sum_probs=293.2

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhH-hhcCceEEe--
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY--  130 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~-~~~G~~~~~--  130 (495)
                      ..++.+|++.++|||||||.||||++||+++..+.......+.+...|+.++.+|++|.+|+...+.+ +..|.+++.  
T Consensus       179 ~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~  258 (537)
T KOG1176|consen  179 RPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLR  258 (537)
T ss_pred             ccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECC
Confidence            34567999999999999999999999999998887776666777779999999999999999988775 566666665  


Q ss_pred             -cchHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          131 -TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       131 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                       +++..+++.|++|++|++..+|.++..|+.....                                             
T Consensus       259 ~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~---------------------------------------------  293 (537)
T KOG1176|consen  259 KFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIV---------------------------------------------  293 (537)
T ss_pred             CCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCcc---------------------------------------------
Confidence             4799999999999999999999999888764210                                             


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcC-CeeeeccCcccCccceec
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~  287 (495)
                                                    ....+++++.+.+||++++++. +++.+.++ ..+.++||+||+++.++.
T Consensus       294 ------------------------------~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~  343 (537)
T KOG1176|consen  294 ------------------------------KKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITS  343 (537)
T ss_pred             ------------------------------CcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceee
Confidence                                          0134556689999999999876 77777887 889999999999988877


Q ss_pred             cCCCC-CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCC
Q 011011          288 RRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  366 (495)
Q Consensus       288 ~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~  366 (495)
                      +.... .+++++|.+++++...+.+ ++|+.+++++.||||++|+.++.||++||++|++.|+.+|||+|||+|++|+  
T Consensus       344 ~~~~~e~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~--  420 (537)
T KOG1176|consen  344 NDWGPERKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDE--  420 (537)
T ss_pred             cCCCccCcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcC--
Confidence            76555 4889999999988777766 8899999999999999999999999999999999998889999999999999  


Q ss_pred             CCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHc
Q 011011          367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  442 (495)
Q Consensus       367 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~  442 (495)
                              ||+|+|.||+||+||. +|++|+|.|||++|..||.|.||+|+|.+|+    .++|+||.+++         
T Consensus       421 --------DG~l~IvdR~KdlIk~-~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g---------  482 (537)
T KOG1176|consen  421 --------DGYLYIVDRSKDLIKY-GGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKG---------  482 (537)
T ss_pred             --------CCeEEEecchhhheee-CCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCC---------
Confidence                    8999999999999998 9999999999999999999999999999875    57799999864         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          443 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       443 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                             ..+++++++++++++|+.|+     .++++.++++.+...|||+
T Consensus       483 -------~~lte~di~~~v~k~l~~y~-----~~~~V~Fvd~lPKs~~GKi  521 (537)
T KOG1176|consen  483 -------STLTEKDIIEYVRKKLPAYK-----LPGGVVFVDELPKTPNGKI  521 (537)
T ss_pred             -------CcCCHHHHHHHHHhhCChhh-----ccCeEEEeccCCCCCcchH
Confidence                   67899999999999999975     6699999999999999986

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.8e-57  Score=485.09  Aligned_cols=419  Identities=26%  Similarity=0.385  Sum_probs=328.0

Q ss_pred             CcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhccc----C
Q 011011           21 EIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV----P   96 (495)
Q Consensus        21 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~----~   96 (495)
                      .+.+++|+++...+.......         .......++|+++|+|||||||.||||++||+|+.+.+......+    +
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~  305 (700)
T PTZ00216        235 GCRLVAWTDVVAKGHSAGSHH---------PLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIG  305 (700)
T ss_pred             CceEEEHHHHHHhCCcccccc---------ccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccC
Confidence            456788988877653111000         011345789999999999999999999999999988776654332    2


Q ss_pred             -CCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecchHhHHH-------HHhHhCCcEEEeCchHHHHHHHHHHHHHhh
Q 011011           97 -AENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKD-------DLQRYQPHYMISVPLVYETLYSGIQKQIFT  168 (495)
Q Consensus        97 -~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~~~~~~~-------~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  168 (495)
                       ..++|++++++|++|++++......+..|+++.+.++..+.+       ++++++||++.++|+++..+.+........
T Consensus       306 ~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~  385 (700)
T PTZ00216        306 PPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFGSPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPP  385 (700)
T ss_pred             CCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEECCHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhc
Confidence             367899999999999999876666678888888777776665       689999999999999999999877665555


Q ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-Cc
Q 011011          169 SSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-IS  247 (495)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  247 (495)
                      ...+++.++..+.......     ...+.                              ...+.+.+.++++++.++ .+
T Consensus       386 ~~~~~~~~~~~a~~~~~~~-----~~~~~------------------------------~~~~~~~~v~~~~~~~~g~~l  430 (700)
T PTZ00216        386 VGSLKRRVFDHAYQSRLRA-----LKEGK------------------------------DTPYWNEKVFSAPRAVLGGRV  430 (700)
T ss_pred             cCHHHHHHHHHHHHHHHHH-----HHcCC------------------------------CCchHHHHHHHHHHHHhCCcE
Confidence            5555554444433222110     00000                              011245566777777775 57


Q ss_pred             eEEEeccCCCChhHHHHHHH-cCCeeeeccCcccCccceeccCCCCCCccccccCcCCcEEEEEeCCCC-CcCCCCCccE
Q 011011          248 KAGVSGGGSLPMHIDLFYEA-IGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN-EVLPAGSKGI  325 (495)
Q Consensus       248 ~~i~~gg~~l~~~~~~~~~~-~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~-~~~~~g~~GE  325 (495)
                      |.+++||+++++++.++++. ++ +++++||+||++...+.........+++|+|+++++++|+|+++. ...+++..||
T Consensus       431 r~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GE  509 (700)
T PTZ00216        431 RAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGE  509 (700)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCce
Confidence            99999999999998777765 56 999999999998766655555556789999999999999996542 2345677899


Q ss_pred             EEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHH
Q 011011          326 VKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAA  405 (495)
Q Consensus       326 l~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l  405 (495)
                      |+|+||+++.|||++|+.|+++|+.+|||+|||+|++++          ||+++|+||+||+||+++|++|+|.+||+++
T Consensus       510 L~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~----------dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l  579 (700)
T PTZ00216        510 ILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAA----------NGTLRIIGRVKALAKNCLGEYIALEALEALY  579 (700)
T ss_pred             EEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcC----------CCcEEEEEehHhheecCCCceeccHHHHHHH
Confidence            999999999999999999999999899999999999998          8999999999999996699999999999999


Q ss_pred             hcCcccce---EEEEecCCCeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhcc----CCCcccc
Q 011011          406 LRSSLIRQ---IVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK----CSFQIGP  478 (495)
Q Consensus       406 ~~~p~V~~---~~vvg~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~----~~~~~~~  478 (495)
                      .+||.|.+   +++++..++.++|+|+++.+.+.+|+++.++.....+.+..+++++.+.+.+.+..+.    ..|+|++
T Consensus       580 ~~~p~V~~~~~~v~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~  659 (700)
T PTZ00216        580 GQNELVVPNGVCVLVHPARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRH  659 (700)
T ss_pred             hcCcCcccceEEEEEecCCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeE
Confidence            99999996   4445556788999999999999999998876532223346678888888888877432    2389999


Q ss_pred             EEEecCCCCCCCCeec
Q 011011          479 IHVVDEPFTVNFLCLA  494 (495)
Q Consensus       479 ~~~~~~~~~~~~~~l~  494 (495)
                      |+++.++|+++||+||
T Consensus       660 ~~~~~~~f~~~~g~lT  675 (700)
T PTZ00216        660 VRVLSDEWTPENGVLT  675 (700)
T ss_pred             EEEECCCCCCCCCCCC
Confidence            9999999999999997

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.1e-54  Score=411.87  Aligned_cols=372  Identities=26%  Similarity=0.394  Sum_probs=304.8

Q ss_pred             CeEEEEEeCCCCCCCCcccCCcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhhhc
Q 011011            1 MRFIILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLT   80 (495)
Q Consensus         1 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t   80 (495)
                      |+++|+.++....        .-...++|++..+.........       .-.....|||++.|.|||||||.|||+.+|
T Consensus       191 lthvi~~~ed~~~--------~Ga~~~sev~~~~s~~~~a~l~-------~~~k~~~pdd~~niQFTSGTTG~PKgatLs  255 (596)
T KOG1177|consen  191 LTHVILADEDHPL--------PGAFLLSEVLKAASKEERAKLA-------DMSKWLSPDDAVNIQFTSGTTGAPKGATLS  255 (596)
T ss_pred             ceEEEecCCCCcC--------CCceehHHHHHhcchHHHHHHH-------hhhhhcCCCCceEEEeccCCCCCCcceeee
Confidence            4677777632222        1446788888877663221100       112346899999999999999999999999


Q ss_pred             hHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec----chHhHHHHHhHhCCcEEEeCchHH
Q 011011           81 HKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT----AVRNLKDDLQRYQPHYMISVPLVY  155 (495)
Q Consensus        81 h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~  155 (495)
                      |.|++++.......+++...+++++..|++|.+|... .+.++..|++++++    ++...+++|+++++|.++++|+++
T Consensus       256 H~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~  335 (596)
T KOG1177|consen  256 HYNFLNNARAVGARAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMF  335 (596)
T ss_pred             hhhhhhhHHHHHHHhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHH
Confidence            9999999999888899999899999999999999766 56679999999994    689999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 011011          156 ETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKL  235 (495)
Q Consensus       156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (495)
                      ..|++..+....                                                                    
T Consensus       336 ~Dlln~~~~~~~--------------------------------------------------------------------  347 (596)
T KOG1177|consen  336 VDLLNIPQKQQV--------------------------------------------------------------------  347 (596)
T ss_pred             HHHhcchhhccC--------------------------------------------------------------------
Confidence            988765333221                                                                    


Q ss_pred             HHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCC-eeeeccCcccCccceeccCCCC---CCccccccCcCCcEEEEE
Q 011011          236 VYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAARRPTC---NVLGSVGHPINHTEIKIV  310 (495)
Q Consensus       236 ~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~~~~~~~~---~~~~~~G~p~~~~~v~i~  310 (495)
                             .++++|.++.||+++|+++ +...+..+. .+..+||+||+++..+.....+   ....++|+.+++.+..|+
T Consensus       348 -------~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv  420 (596)
T KOG1177|consen  348 -------DLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIV  420 (596)
T ss_pred             -------chhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccc
Confidence                   1223377889999999997 445555554 3777899999997776655433   456789999999999999


Q ss_pred             eCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEe
Q 011011          311 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVL  390 (495)
Q Consensus       311 d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~  390 (495)
                      | ..|..+|-|..|||+++|++.|.|||++++.|.++...|.||+|||++.+++          +|.++++||.||||+.
T Consensus       421 ~-~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~e----------nG~i~iVGRskdmI~r  489 (596)
T KOG1177|consen  421 D-KDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDE----------NGTIEIVGRSKDMIIR  489 (596)
T ss_pred             c-CCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcC----------CCcEEEEEcccCeEEe
Confidence            9 6799999999999999999999999999999999999999999999999999          8999999999999996


Q ss_pred             CCceeecchHHHHHHhcCcccceEEEEecCCCeeE----EEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHH
Q 011011          391 STGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR  466 (495)
Q Consensus       391 ~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~~~----a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  466 (495)
                       +|++|+|.|||+.|.+||.|.++.|||++|++++    |+|-+..+.              ....+.++|+.+++.+|.
T Consensus       490 -GGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~--------------e~~~t~E~lKa~Ck~kla  554 (596)
T KOG1177|consen  490 -GGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGA--------------EGKTTAETLKAMCKGKLA  554 (596)
T ss_pred             -CCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccc--------------cccccHHHHHHHHhcccc
Confidence             9999999999999999999999999999998877    344343321              012578999999999999


Q ss_pred             hHhccCCCccccEEEecCCCCCCCCee
Q 011011          467 KWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      .++.|     +.|.++++=|.+-+||+
T Consensus       555 HFKiP-----ky~vf~~~FPlT~tGKI  576 (596)
T KOG1177|consen  555 HFKIP-----KYFVFVDEFPLTTTGKI  576 (596)
T ss_pred             cccCC-----cEEEEeccCcccccccc
Confidence            98755     88888888667777775

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=3e-53  Score=427.81  Aligned_cols=332  Identities=25%  Similarity=0.310  Sum_probs=277.8

Q ss_pred             cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHH-hhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEe
Q 011011           53 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS-LYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY  130 (495)
Q Consensus        53 ~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~  130 (495)
                      ....+++|+++|+|||||||+||||+|+|+.++..... ....+.+.++|++++..++.|++|... .+.++..|++.++
T Consensus       165 ~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~  244 (528)
T COG0365         165 FEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVL  244 (528)
T ss_pred             ccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEE
Confidence            34578999999999999999999999999987655443 445677789999999999999999987 6778999999976


Q ss_pred             c------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          131 T------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       131 ~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                      +      +++.+++.|+++++|.+++.|+.++.|.+...        .                                
T Consensus       245 ~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--------~--------------------------------  284 (528)
T COG0365         245 YDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--------G--------------------------------  284 (528)
T ss_pred             eCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--------c--------------------------------
Confidence            4      27889999999999999999999988866421        0                                


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCcc
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSP  283 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~  283 (495)
                                                         -+..++++|.+.+.||+++++. +.+.+.+|+++.+.||+||++.
T Consensus       285 -----------------------------------~~~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~  329 (528)
T COG0365         285 -----------------------------------EPYDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGM  329 (528)
T ss_pred             -----------------------------------ccccchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCc
Confidence                                               0134455699999999999998 5555678999999999999996


Q ss_pred             ceeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccC--CcchhccCCchhhhhccCCCCccccCceee
Q 011011          284 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATKQALDEDGWLNTGDIGW  361 (495)
Q Consensus       284 ~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p--~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~  361 (495)
                      +.....+ ....++.|.|+||+++.++|++ |+++++|+ |+|+++.|  +++++||+||+.+.+++... ||.|||.++
T Consensus       330 ~~~~~~~-~~~~g~~g~p~pG~~~~vvdd~-g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~  405 (528)
T COG0365         330 GFIAGRP-PVKNGSSGLPLPGYAVRRVDDE-GNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAE  405 (528)
T ss_pred             cccCCCC-CcCCCCCCCCCCCceeEEECCC-CCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeE
Confidence            5554444 4455666999999999999977 99999999 99999987  99999999999999998644 999999999


Q ss_pred             eccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHH
Q 011011          362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  437 (495)
Q Consensus       362 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~  437 (495)
                      +|+          ||+++|+||.||+|++ .|++|.|.|||++|.+||.|.||+|||.+|+    .+.|||+++++    
T Consensus       406 ~De----------dGy~~i~GR~DDvI~v-sG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g----  470 (528)
T COG0365         406 RDE----------DGYFWLHGRSDDVIKV-SGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAG----  470 (528)
T ss_pred             Ecc----------CCCEEEEeeccceEec-cCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCC----
Confidence            999          8999999999999998 7999999999999999999999999999763    46799999864    


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          438 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                  -+.+  +|.+.+++.+++..-+ ...+++|.++++.|.+.+||+
T Consensus       471 ------------~~~~--~L~~ei~~~vr~~~~~-~~~p~~i~fv~~LPkT~sGKI  511 (528)
T COG0365         471 ------------VEPN--ELAEEIRRHVARNIGP-HAIPRKIRFVDELPKTASGKI  511 (528)
T ss_pred             ------------CChH--HHHHHHHHHHHhccCc-ccCCceEEEecCCCCCCcccH
Confidence                        1111  5555555555444433 247799999999999999997

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.6e-53  Score=443.83  Aligned_cols=332  Identities=34%  Similarity=0.552  Sum_probs=288.4

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccC--CCCCcEEEEECChhhHHHHHHhHhH-hhcCceEEec-
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERACGYFI-FSRGIELMYT-  131 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~h~~~~~~~~~~-~~~G~~~~~~-  131 (495)
                      .+++|+++++|||||||.||||++||+|+..+...+...++  +++.|++++++|++|.+|+...+.+ +..|+++++. 
T Consensus       168 ~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~  247 (534)
T COG0318         168 VDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLS  247 (534)
T ss_pred             CCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCC
Confidence            67999999999999999999999999999998888887887  8999999999999999999987766 8888888874 


Q ss_pred             ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                          ++..++..+.++++|.+.++|+++..++.......                                         
T Consensus       248 ~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~-----------------------------------------  286 (534)
T COG0318         248 PEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD-----------------------------------------  286 (534)
T ss_pred             CCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-----------------------------------------
Confidence                57889999999999999999999998776432210                                         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceEEEeccCCCChhH-HHHHHHcC-CeeeeccCcccCccc
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPV  284 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~  284 (495)
                                                        ..+. .+|.+++||+++++++ +++.+.++ ..++++||+||++..
T Consensus       287 ----------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~  332 (534)
T COG0318         287 ----------------------------------DDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPV  332 (534)
T ss_pred             ----------------------------------cccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCce
Confidence                                              1111 2599999999999887 66667887 579999999999987


Q ss_pred             eeccCCCC--CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeee
Q 011011          285 IAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  362 (495)
Q Consensus       285 ~~~~~~~~--~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~  362 (495)
                      ++......  ...+++|.|+|+++++|+|+++++++| |++|||+++||+++.|||++|+.|+++|..+|||+|||+|++
T Consensus       333 ~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~  411 (534)
T COG0318         333 VTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYV  411 (534)
T ss_pred             eecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEE
Confidence            77666554  466788999999999999988877777 999999999999999999999999998876799999999999


Q ss_pred             ccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHH
Q 011011          363 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  438 (495)
Q Consensus       363 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~  438 (495)
                      ++          +|+++|.||.||+|+. +|++|+|.|||+++.+||.|.+|+|+|.+++    .+.|+|+++++.    
T Consensus       412 d~----------~G~l~i~gR~kd~I~~-gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~----  476 (534)
T COG0318         412 DE----------DGYLYIVGRLKDLIIS-GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGG----  476 (534)
T ss_pred             cC----------CccEEEEeccceEEEe-CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCC----
Confidence            99          8999999999999996 9999999999999999999999999999865    566888887530    


Q ss_pred             HHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          439 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                ....+.++++++++.+++.|+     .++++.++++.+.+.+||+
T Consensus       477 ----------~~~~~~~~i~~~~~~~l~~~~-----~P~~v~~v~~lP~t~sGKi  516 (534)
T COG0318         477 ----------DAELTAEELRAFLRKRLALYK-----VPRIVVFVDELPRTASGKI  516 (534)
T ss_pred             ----------CCCCCHHHHHHHHHhhhhccc-----CCeEEEEeCCCCCCCchhh
Confidence                      023378999999999999997     4589999999999999987

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=8e-51  Score=433.35  Aligned_cols=354  Identities=23%  Similarity=0.373  Sum_probs=284.4

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCC--CCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE--NGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~  131 (495)
                      ...++|+++|+|||||||.||||++||+++..........++..  .++++++++|++|++++.. .+.++..|+++++.
T Consensus       205 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~  284 (614)
T PRK08180        205 AVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYID  284 (614)
T ss_pred             CCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEe
Confidence            34689999999999999999999999999988777666555553  5689999999999999865 44568899998874


Q ss_pred             c-------hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          132 A-------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       132 ~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                      +       +..+++.++++++|+++++|+++..|++......    ..                                
T Consensus       285 ~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~----~~--------------------------------  328 (614)
T PRK08180        285 DGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDA----AL--------------------------------  328 (614)
T ss_pred             CCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhch----hh--------------------------------
Confidence            2       2467888999999999999999998876532210    00                                


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHH-----cC--CeeeeccC
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA-----IG--VKVQVGYG  277 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~-----~g--~~v~~~YG  277 (495)
                                                         ....++.+|.+++||+++++++.+.+..     +|  +++++.||
T Consensus       329 -----------------------------------~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG  373 (614)
T PRK08180        329 -----------------------------------RRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLG  373 (614)
T ss_pred             -----------------------------------hhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeec
Confidence                                               0012345699999999999987444332     33  68999999


Q ss_pred             cccCccceeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccC
Q 011011          278 LTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG  357 (495)
Q Consensus       278 ~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TG  357 (495)
                      +||++.+++.........+++|+|+++++++++|+        |..|||+++||+++.|||++|+.|++.|+.+|||+||
T Consensus       374 ~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~--------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TG  445 (614)
T PRK08180        374 MTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPV--------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSG  445 (614)
T ss_pred             ccccCCceEecccccCCCCcccCccCCcEEEEecC--------CCCcEEEEecCccchhhcCChhHhHhhcccCCceecc
Confidence            99998776654444456789999999999999874        3469999999999999999999999999889999999


Q ss_pred             ceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeec--chHHHHHHhcCcccceEEEEecCCCeeEEEEecChHHH
Q 011011          358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE--PLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEV  435 (495)
Q Consensus       358 Dl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~--~~~IE~~l~~~p~V~~~~vvg~~~~~~~a~vv~~~~~~  435 (495)
                      |+|++++. +     +.+|+++|+||+||+|++++|++|+  |.|+|.++.+||.|.+|+|+|.+++.++|+|+++++..
T Consensus       446 Dlg~~~~~-~-----d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~~~~a~V~~~~~~~  519 (614)
T PRK08180        446 DAVRFVDP-A-----DPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRDEIGLLVFPNLDAC  519 (614)
T ss_pred             ceEEecCC-c-----CCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCCceEEEEEcCHHHH
Confidence            99999410 0     0169999999999999887898776  77889999999999999999999999999999998877


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCC---CccccEEEecCCCCCCCCeec
Q 011011          436 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS---FQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~  494 (495)
                      ..++... .........+.+++++++++.|++++....   +++++|.++++.|++.+||+|
T Consensus       520 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t  580 (614)
T PRK08180        520 RRLAGLL-ADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEIT  580 (614)
T ss_pred             HHHHhhc-ccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccC
Confidence            6666554 111111234678899999999999986433   589999999999999999987

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7e-50  Score=426.92  Aligned_cols=352  Identities=25%  Similarity=0.356  Sum_probs=280.6

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCC---CcEEEEECChhhHHHHHHhH-hHhhcCceEEe
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN---GDKFLSMLPPWHVYERACGY-FIFSRGIELMY  130 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~---~d~~l~~~p~~h~~~~~~~~-~~~~~G~~~~~  130 (495)
                      ...++|+++|+|||||||.||||++||+++..........+....   .++.++++|++|++++...+ ..+..|+++++
T Consensus       216 ~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl  295 (624)
T PRK12582        216 AITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYI  295 (624)
T ss_pred             cCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEE
Confidence            356899999999999999999999999999877665544444433   58999999999999987654 46788999887


Q ss_pred             cc-------hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCC
Q 011011          131 TA-------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  203 (495)
Q Consensus       131 ~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (495)
                      .+       ...+++.++++++|++.++|+++..|+.......    ..                               
T Consensus       296 ~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~----~~-------------------------------  340 (624)
T PRK12582        296 DDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDD----AL-------------------------------  340 (624)
T ss_pred             cCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCH----HH-------------------------------
Confidence            42       2346677889999999999999988765432110    00                               


Q ss_pred             CCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHH-----c--CCeeeecc
Q 011011          204 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA-----I--GVKVQVGY  276 (495)
Q Consensus       204 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~-----~--g~~v~~~Y  276 (495)
                                                          ....++.+|.+++||+++++++.+.+..     +  +++++++|
T Consensus       341 ------------------------------------~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~Y  384 (624)
T PRK12582        341 ------------------------------------RRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGY  384 (624)
T ss_pred             ------------------------------------HHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEecc
Confidence                                                0011234599999999999998554443     2  36899999


Q ss_pred             CcccCccceeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCcccc
Q 011011          277 GLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT  356 (495)
Q Consensus       277 G~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~T  356 (495)
                      |+||++.++..........+++|+|+++++++++        +.|+.|||+|+||+++.|||++|+.|++.|..+|||+|
T Consensus       385 G~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~--------~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~T  456 (624)
T PRK12582        385 GATETAPTTTGTHWDTERVGLIGLPLPGVELKLA--------PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRL  456 (624)
T ss_pred             ccccccceeecccCCCCCCCCCCcCCCCcEEEEc--------cCCCceEEEEECCcccccccCCccchhhhcCccCCccc
Confidence            9999987665333334567899999999999985        45778999999999999999999999999988999999


Q ss_pred             Cceeee-ccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHH--HHHhcCcccceEEEEecCCCeeEEEEecChH
Q 011011          357 GDIGWI-APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE--EAALRSSLIRQIVVIGQDQRRPGAIIVPDKE  433 (495)
Q Consensus       357 GDl~~~-~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE--~~l~~~p~V~~~~vvg~~~~~~~a~vv~~~~  433 (495)
                      ||+|++ +++       +.+|+++|.||+||+|++++|++|+|.+||  .++.+||.|.+|+|+|.+++.++++|+++..
T Consensus       457 GDlg~~~d~~-------~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~~g~lv~p~~~  529 (624)
T PRK12582        457 GDAARFVDPD-------DPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAFIGLLAWPNPA  529 (624)
T ss_pred             cceEEecCCc-------CCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCcEEEEEecCHH
Confidence            999998 421       016899999999999998789999999885  6888999999999999999999999999987


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCC--C-ccccEEEecCCCCCCCCeec
Q 011011          434 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS--F-QIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~-~~~~~~~~~~~~~~~~~~l~  494 (495)
                      ....++...+..  ....++.+++.+++++.|++++...+  + +|++|.+++++|+.++|++|
T Consensus       530 ~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t  591 (624)
T PRK12582        530 ACRQLAGDPDAA--PEDVVKHPAVLAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEIT  591 (624)
T ss_pred             HHHHHHhcCCCC--HHHHhcCHHHHHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCC
Confidence            766565443221  11234668899999999999986554  5 99999999999999999987

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.3e-49  Score=417.72  Aligned_cols=328  Identities=24%  Similarity=0.377  Sum_probs=271.1

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~--  131 (495)
                      ..+++|+++|+|||||||.||||++||+++..........+++.++|++++++|++|++++.. .+.++..|+++++.  
T Consensus       179 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~  258 (539)
T PRK06334        179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYN  258 (539)
T ss_pred             CCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecC
Confidence            457899999999999999999999999999887777667778889999999999999999865 45668889988763  


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..+++.|+++++|.+.++|+++..+++......                                           
T Consensus       259 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------------------  295 (539)
T PRK06334        259 PLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQE-------------------------------------------  295 (539)
T ss_pred             CCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcc-------------------------------------------
Confidence              57899999999999999999999988866422110                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccceec
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~  287 (495)
                                                      ..++.+|.+++||+++++.+ +.+.+.+ ++.+++.||+||++.+++.
T Consensus       296 --------------------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  343 (539)
T PRK06334        296 --------------------------------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI  343 (539)
T ss_pred             --------------------------------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEe
Confidence                                            12234589999999999987 4555566 6899999999999877665


Q ss_pred             cCCCC-CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhcc-CCCCccccCceeeeccC
Q 011011          288 RRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL-DEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       288 ~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~-~~~~~~~TGDl~~~~~~  365 (495)
                      ..... ...+++|+|+++++++|+|+++++++++|+.|||+|+|++++.||+++++.+.... ..++||+|||+|++++ 
T Consensus       344 ~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~-  422 (539)
T PRK06334        344 NTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDR-  422 (539)
T ss_pred             ccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECC-
Confidence            44322 23467999999999999998888999999999999999999999999998765332 3468999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccce------EEEEecCCCeeE--EEEecChHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQ------IVVIGQDQRRPG--AIIVPDKEEVLM  437 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~------~~vvg~~~~~~~--a~vv~~~~~~~~  437 (495)
                               +|+++|.||.||+|++ +|++|+|.|||++|.+||+|.+      ++|++.+++...  ++++..      
T Consensus       423 ---------~G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~------  486 (539)
T PRK06334        423 ---------HGELFLKGRLSRFVKI-GAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFP------  486 (539)
T ss_pred             ---------CCeEEEEeccCCeEEE-CCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEecc------
Confidence                     8999999999999997 8999999999999999999998      788888776543  333321      


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          438 AAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                    .+.++++++++++ ++.|+     .++.|.++++.|.+.+||+
T Consensus       487 --------------~~~~~~~~~l~~~~~~~~~-----~P~~i~~v~~lP~t~~GKi  524 (539)
T PRK06334        487 --------------TSISEVNDILKNSKTSSIL-----KISYHHQVESIPMLGTGKP  524 (539)
T ss_pred             --------------CChHHHHHHHHhcCCcccc-----cchheeeecccccccCCcc
Confidence                          1346677888775 55565     5578999999999999997

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-49  Score=424.65  Aligned_cols=340  Identities=18%  Similarity=0.225  Sum_probs=271.3

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHH-HHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecc
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKN-LLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA  132 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~-l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~  132 (495)
                      ..++++|+++|+|||||||.||||+++|++ +......+...+....+|++++..|++|+.+....+.++..|+++++.+
T Consensus       249 ~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~  328 (647)
T PTZ00237        249 VPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFE  328 (647)
T ss_pred             eeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeC
Confidence            456789999999999999999999999998 4443333444556778899999999999877666777899999998742


Q ss_pred             ---------hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCC
Q 011011          133 ---------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  203 (495)
Q Consensus       133 ---------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (495)
                               +..+++.++++++|.+.++|+++..|.+......    ..                               
T Consensus       329 ~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----~~-------------------------------  373 (647)
T PTZ00237        329 GGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEAT----II-------------------------------  373 (647)
T ss_pred             CCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccc----cc-------------------------------
Confidence                     4679999999999999999999988765311000    00                               


Q ss_pred             CCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHH-HHcCCeeeeccCcccCc
Q 011011          204 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESS  282 (495)
Q Consensus       204 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~-~~~g~~v~~~YG~TE~~  282 (495)
                                                         .-...++.+|.+++||+++++++.+++ +.+|+++++.||+||++
T Consensus       374 -----------------------------------~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~  418 (647)
T PTZ00237        374 -----------------------------------RSKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIG  418 (647)
T ss_pred             -----------------------------------ccccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhC
Confidence                                               000123445899999999999985554 56899999999999998


Q ss_pred             cceeccCCC-CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccC---CcchhccCCchhhhhccCC-CCccccC
Q 011011          283 PVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALDE-DGWLNTG  357 (495)
Q Consensus       283 ~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p---~~~~gY~~~~~~t~~~~~~-~~~~~TG  357 (495)
                      ..+...... ....+++|.|+++++++|+|+ ++++++.|+.|||++++|   +++.|||+|++.+++.|.. +|||+||
T Consensus       419 ~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~-~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TG  497 (647)
T PTZ00237        419 ITYLYCYGHINIPYNATGVPSIFIKPSILSE-DGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSG  497 (647)
T ss_pred             hhhhccCCCCCCCCCCCccCcCCceEEEECC-CCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECC
Confidence            655433322 223478999999999999995 688999999999999986   7899999999999988854 7999999


Q ss_pred             ceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChH
Q 011011          358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKE  433 (495)
Q Consensus       358 Dl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~  433 (495)
                      |+|++++          +|+++|+||+||+|+. +|++|+|.|||++|.+||.|.+|+|+|.++    +.+.|+|+++++
T Consensus       498 Dlg~~d~----------dG~l~i~GR~dd~i~~-~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~  566 (647)
T PTZ00237        498 DLGFKDE----------NGYYTIVSRSDDQIKI-SGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQD  566 (647)
T ss_pred             cEEEECC----------CCeEEEEeccCCEEEE-CCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccC
Confidence            9999998          8999999999999998 899999999999999999999999999975    457789988642


Q ss_pred             HHHHHHHHcCCCcCCccccCh----HHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          434 EVLMAAKRLSIVHADASELSK----EKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      .             .....+.    ++++++++++|..++     .+++|.++++.|.+.+||+
T Consensus       567 ~-------------~~~~~~~~~l~~~i~~~~~~~l~~~~-----~P~~i~~v~~lP~T~sGKi  612 (647)
T PTZ00237        567 Q-------------SNQSIDLNKLKNEINNIITQDIESLA-----VLRKIIIVNQLPKTKTGKI  612 (647)
T ss_pred             c-------------cccCCCHHHHHHHHHHHHHhhcCccc-----cCcEEEEcCCCCCCCCccE
Confidence            0             0011222    445566666666664     6689999999999999996

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.3e-48  Score=417.30  Aligned_cols=330  Identities=28%  Similarity=0.441  Sum_probs=275.9

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEecc-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYTA-  132 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~~-  132 (495)
                      ...++++++++|||||||.||+|++||+++..........+++.++|++++.+|++|+++... .+.++..|+++++.+ 
T Consensus       209 ~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~  288 (632)
T PRK07529        209 PIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATP  288 (632)
T ss_pred             CCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCc
Confidence            346799999999999999999999999999887777776777889999999999999999876 456689999998853 


Q ss_pred             --------hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          133 --------VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       133 --------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                              ...+++.++++++|.+.++|+++..+++....                                        
T Consensus       289 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------------------------  328 (632)
T PRK07529        289 QGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD----------------------------------------  328 (632)
T ss_pred             cccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc----------------------------------------
Confidence                    25788999999999999999999877542100                                        


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCcc
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSP  283 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~  283 (495)
                                                          ...++++|.+++||+++++++ +.+.+.+|+++++.||+||++.
T Consensus       329 ------------------------------------~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~  372 (632)
T PRK07529        329 ------------------------------------GHDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATC  372 (632)
T ss_pred             ------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCc
Confidence                                                012334589999999999998 4555668999999999999987


Q ss_pred             ceeccCCC-CCCccccccCcCCcEEEEEeC-CCC---CcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCc
Q 011011          284 VIAARRPT-CNVLGSVGHPINHTEIKIVDA-ETN---EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  358 (495)
Q Consensus       284 ~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~-~~~---~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGD  358 (495)
                      ++..+... ....+++|.|+|+++++++.. +.+   ++++.|+.|||+|+||+++.||++++ .+...|..+|||+|||
T Consensus       373 ~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TGD  451 (632)
T PRK07529        373 VSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTGD  451 (632)
T ss_pred             ccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcCc
Confidence            76655433 236789999999999998632 234   78999999999999999999999865 4666676789999999


Q ss_pred             eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHH
Q 011011          359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  434 (495)
Q Consensus       359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~  434 (495)
                      +|++++          +|++++.||.||+|+. +|++|+|.+||++|.+||.|.+|+|++.++.    .+.++|++.++ 
T Consensus       452 lg~~d~----------dG~l~i~GR~~d~i~~-~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~-  519 (632)
T PRK07529        452 LGRIDA----------DGYFWLTGRAKDLIIR-GGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPG-  519 (632)
T ss_pred             EEEEcC----------CceEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCC-
Confidence            999998          8999999999999997 9999999999999999999999999998764    46788887653 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHh-HhccCCCccccEEEecCCCCCCCCee
Q 011011          435 VLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                     ...+.++++++++++++. ++     .+++|.++++.+.+.+||+
T Consensus       520 ---------------~~~~~~~l~~~~~~~l~~~~~-----~P~~i~~v~~lP~t~~GKi  559 (632)
T PRK07529        520 ---------------ASATEAELLAFARDHIAERAA-----VPKHVRILDALPKTAVGKI  559 (632)
T ss_pred             ---------------CCCCHHHHHHHHHHhcchhcc-----CCcEEEEecCCCCCCCCcc
Confidence                           345678899999999864 44     5689999999999999997

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=3.7e-49  Score=423.10  Aligned_cols=336  Identities=16%  Similarity=0.191  Sum_probs=274.3

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHH-HHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      .++++|+++|+|||||||.||||+++|++++. ....+...++++++|++++.+|++|+++... .+.++..|+++++. 
T Consensus       271 ~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~  350 (666)
T PLN02654        271 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFE  350 (666)
T ss_pred             ecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEEC
Confidence            35789999999999999999999999999754 3445566678999999999999999999765 46679999998874 


Q ss_pred             ------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011          132 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  205 (495)
Q Consensus       132 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (495)
                            ++..+++.|+++++|++.++|+++..|.+...+..                                       
T Consensus       351 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------------------------------------  391 (666)
T PLN02654        351 GAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV---------------------------------------  391 (666)
T ss_pred             CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCcccc---------------------------------------
Confidence                  47889999999999999999999988865311000                                       


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcC---CeeeeccCcccC
Q 011011          206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLTES  281 (495)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g---~~v~~~YG~TE~  281 (495)
                                                        ....++.+|.++++|++++++. +.+.+.+|   +++.+.||+||+
T Consensus       392 ----------------------------------~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~  437 (666)
T PLN02654        392 ----------------------------------TRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET  437 (666)
T ss_pred             ----------------------------------ccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceecccccccc
Confidence                                              0012234589999999999987 45556777   689999999999


Q ss_pred             ccceeccCCC--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc--CCcchhccCCchhhhhccCC--CCccc
Q 011011          282 SPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALDE--DGWLN  355 (495)
Q Consensus       282 ~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~--p~~~~gY~~~~~~t~~~~~~--~~~~~  355 (495)
                      ++......+.  ...++++|.|++|++++|+|+ .+++++.|+.|||++++  |++++|||+|++.+++.+..  +|||+
T Consensus       438 g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~-~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~  516 (666)
T PLN02654        438 GGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYF  516 (666)
T ss_pred             CCeeeccCCCCCCCCCCccCCCCCCceEEEECC-CCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEE
Confidence            8765543332  246788999999999999995 57888888999999998  78999999999999877632  79999


Q ss_pred             cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecC
Q 011011          356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  431 (495)
Q Consensus       356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~  431 (495)
                      |||+|++++          ||+++|+||+||+|++ +|++|+|.|||++|.+||.|.+++|+|.+++    .+.++|+++
T Consensus       517 TGD~~~~d~----------dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~  585 (666)
T PLN02654        517 SGDGCSRDK----------DGYYWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLV  585 (666)
T ss_pred             eCceEEECC----------CCcEEEeeeccCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEEC
Confidence            999999998          8999999999999998 8999999999999999999999999998753    577888887


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          432 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ++.             .......++++++++++|..++     .+++|.++++.+.+.+||+
T Consensus       586 ~~~-------------~~~~~l~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~T~sGKi  629 (666)
T PLN02654        586 EGV-------------PYSEELRKSLILTVRNQIGAFA-----APDKIHWAPGLPKTRSGKI  629 (666)
T ss_pred             CCC-------------CCCHHHHHHHHHHHHHhCCCCc-----CCCEEEECCCCCCCCCcCc
Confidence            530             0011113467777777777776     4589999999999999986

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.1e-48  Score=407.22  Aligned_cols=336  Identities=17%  Similarity=0.129  Sum_probs=261.8

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec----
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----  131 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~----  131 (495)
                      .+++|+++|+|||||||.||||++||+++..........++++++|++++.+|++|.+++...+.++..|+++++.    
T Consensus       116 ~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~  195 (499)
T PLN03051        116 APVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAP  195 (499)
T ss_pred             CCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCC
Confidence            3578999999999999999999999999876655555566788999999999999999976666778999998764    


Q ss_pred             chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHH
Q 011011          132 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  211 (495)
Q Consensus       132 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  211 (495)
                      ++..+++.|+++++|++.++|+++..|+....... .                                           
T Consensus       196 ~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~-~-------------------------------------------  231 (499)
T PLN03051        196 LGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAM-E-------------------------------------------  231 (499)
T ss_pred             CcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCcccc-c-------------------------------------------
Confidence            46789999999999999999999988754210000 0                                           


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHH-c--CCeeeeccCcccCccceecc
Q 011011          212 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEA-I--GVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~-~--g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                   ...++.+|.+++||++++++..++++. +  +.++++.||+||++..+...
T Consensus       232 -----------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  282 (499)
T PLN03051        232 -----------------------------GLDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISS  282 (499)
T ss_pred             -----------------------------cCCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecc
Confidence                                         011223489999999999887555544 3  47899999999986543322


Q ss_pred             C-CCCCCccccccCcCCcEEEEEeCCCCCcCCCC--CccEEEEccCCc--chhccCCchhhhhccCC--------CCccc
Q 011011          289 R-PTCNVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQV--MQGYFKNPSATKQALDE--------DGWLN  355 (495)
Q Consensus       289 ~-~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g--~~GEl~v~~p~~--~~gY~~~~~~t~~~~~~--------~~~~~  355 (495)
                      . ......+++|.|.++++++|+| +++++++.|  +.|||+++||.+  +.||++++ .++..++.        .+||+
T Consensus       283 ~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~~~~~~g~~~~~~~~~~~~~  360 (499)
T PLN03051        283 TLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HDKVYYKGMPMYGSKGMPLRR  360 (499)
T ss_pred             cccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-ccceeeecCCccccCCcceee
Confidence            2 2223467899999999999999 457888988  489999999976  58999865 34322211        12689


Q ss_pred             cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhc-CcccceEEEEecCC-----CeeEEEE-
Q 011011          356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVIGQDQ-----RRPGAII-  428 (495)
Q Consensus       356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~-~p~V~~~~vvg~~~-----~~~~a~v-  428 (495)
                      |||+|++++          ||+++|+||+||+|+. +|++|+|.|||++|.+ ||.|.+|+|+|.++     ..+.|+| 
T Consensus       361 TGDlg~~d~----------dG~l~~~gR~~d~ik~-~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~  429 (499)
T PLN03051        361 HGDIMKRTP----------GGYFCVQGRADDTMNL-GGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLV  429 (499)
T ss_pred             cCCeEEECC----------CCcEEEEeccCCEEee-CCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEE
Confidence            999999998          8999999999999997 8999999999999996 99999999999875     3466777 


Q ss_pred             --ecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          429 --VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       429 --v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                        +++++               ....+.+++++++++.+++...+. .++++|.++++.|.+.+||+
T Consensus       430 ~~v~~~~---------------~~~~~~~~l~~~~~~~l~~~l~~~-~~~~~i~~v~~lP~t~~GKi  480 (499)
T PLN03051        430 LGEEKKG---------------FDQARPEALQKKFQEAIQTNLNPL-FKVSRVKIVPELPRNASNKL  480 (499)
T ss_pred             cceeccc---------------ccccchHHHHHHHHHHHHhhcCCc-cCCceEEEcCCCCCCCCccH
Confidence              55432               012456788888888776654332 35578999999999999986

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=3.6e-48  Score=409.04  Aligned_cols=333  Identities=27%  Similarity=0.417  Sum_probs=276.3

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc----ccC-CCCCcEEEEECChhhHHHHHHhH-hHhhcCceE
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVP-AENGDKFLSMLPPWHVYERACGY-FIFSRGIEL  128 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~----~~~-~~~~d~~l~~~p~~h~~~~~~~~-~~~~~G~~~  128 (495)
                      ...++++++++|||||||.||||++||+++...+..+..    .+. ...++++++.+|++|++++...+ .++..|+++
T Consensus       194 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~  273 (560)
T PLN02574        194 VIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTI  273 (560)
T ss_pred             CCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEE
Confidence            346799999999999999999999999999877665432    122 23568899999999999987644 456788888


Q ss_pred             Eec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011          129 MYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  205 (495)
Q Consensus       129 ~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (495)
                      ++.   ++..+++.++++++|.+.++|+++..+.+......                                       
T Consensus       274 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------  314 (560)
T PLN02574        274 VVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVC---------------------------------------  314 (560)
T ss_pred             EEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccc---------------------------------------
Confidence            764   68899999999999999999999988765321100                                       


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcc
Q 011011          206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSP  283 (495)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~  283 (495)
                                                         ...+..+|.+++||++++++. +++.+.+ ++++++.||+||++.
T Consensus       315 -----------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~  359 (560)
T PLN02574        315 -----------------------------------GEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTA  359 (560)
T ss_pred             -----------------------------------cCccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCc
Confidence                                               011234488999999999887 5566677 689999999999986


Q ss_pred             ceeccC--CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceee
Q 011011          284 VIAARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  361 (495)
Q Consensus       284 ~~~~~~--~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~  361 (495)
                      +.+...  ......+++|.|.++++++|+|++++++++.|+.|||+|+|++++.||++|++.|++.|+.+|||+|||+|+
T Consensus       360 ~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~  439 (560)
T PLN02574        360 VGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAY  439 (560)
T ss_pred             eeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEE
Confidence            554222  222456789999999999999988899999999999999999999999999999999998899999999999


Q ss_pred             eccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHH
Q 011011          362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  437 (495)
Q Consensus       362 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~  437 (495)
                      +++          +|++++.||+||+|++ +|++|+|.+||++|.+||.|.+++|++.+++    .+.++|+++++    
T Consensus       440 ~~~----------~G~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~----  504 (560)
T PLN02574        440 FDE----------DGYLYIVDRLKEIIKY-KGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQG----  504 (560)
T ss_pred             EEC----------CCeEEEEecchhheEE-CCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCC----
Confidence            998          8999999999999998 8999999999999999999999999998764    35677776543    


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          438 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                  ...+.+++.++++++|..++     .+++|.++++.+.+.+||+
T Consensus       505 ------------~~~~~~~l~~~~~~~l~~~~-----~p~~v~~v~~iP~t~~GKi  543 (560)
T PLN02574        505 ------------STLSQEAVINYVAKQVAPYK-----KVRKVVFVQSIPKSPAGKI  543 (560)
T ss_pred             ------------CCCCHHHHHHHHHHhccCcc-----cCcEEEEeeccCCCCcchh
Confidence                        34556889999999998886     4578999999999999986

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=4.6e-48  Score=413.58  Aligned_cols=337  Identities=17%  Similarity=0.209  Sum_probs=273.2

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHH-HHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-RSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~  131 (495)
                      ...+++|+++|+|||||||.||||+++|+++.... ......+++.++|++++..|++|+++... .+.++..|+++++.
T Consensus       231 ~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~  310 (625)
T TIGR02188       231 EPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMF  310 (625)
T ss_pred             eecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEE
Confidence            34678999999999999999999999999976543 34455678889999999999999988755 56678999998864


Q ss_pred             -------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          132 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       132 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                             ++..+++.++++++|++.++|+++..|.+......                                      
T Consensus       311 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------  352 (625)
T TIGR02188       311 EGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWV--------------------------------------  352 (625)
T ss_pred             CCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc--------------------------------------
Confidence                   47899999999999999999999988765311100                                      


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHH-HHHcC---CeeeeccCccc
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIG---VKVQVGYGLTE  280 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~-~~~~g---~~v~~~YG~TE  280 (495)
                                                         ....++.+|.+++||+++++++.++ .+.++   +++++.||+||
T Consensus       353 -----------------------------------~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE  397 (625)
T TIGR02188       353 -----------------------------------KKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTE  397 (625)
T ss_pred             -----------------------------------ccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccc
Confidence                                               0012334599999999999987544 45564   78999999999


Q ss_pred             CccceeccCCC--CCCccccccCcCCcEEEEEeCCCCCcCC-CCCccEEEEcc--CCcchhccCCchhhhhccC--CCCc
Q 011011          281 SSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLP-AGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGW  353 (495)
Q Consensus       281 ~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~-~g~~GEl~v~~--p~~~~gY~~~~~~t~~~~~--~~~~  353 (495)
                      +++.+....+.  ...++++|+|+++++++|+| +++++++ +|+.|||++++  |++++|||++++.+.+.+.  .+||
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~  476 (625)
T TIGR02188       398 TGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGY  476 (625)
T ss_pred             cCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCE
Confidence            98765543322  34568899999999999999 6688888 99999999999  6899999999998888764  3789


Q ss_pred             cccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEe
Q 011011          354 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIV  429 (495)
Q Consensus       354 ~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv  429 (495)
                      |+|||+|++++          +|+++|+||+||+|++ +|++|+|.+||++|.+||.|.+|+|++.+++    .+.++|+
T Consensus       477 ~~TGDl~~~d~----------dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv  545 (625)
T TIGR02188       477 YFTGDGARRDK----------DGYIWITGRVDDVINV-SGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVT  545 (625)
T ss_pred             EECCceEEEcC----------CCcEEEEecccCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEE
Confidence            99999999998          8999999999999998 8999999999999999999999999998653    5778888


Q ss_pred             cChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          430 PDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ++++.             .......++++++++++|+.++     .+++|.++++.+.+.|||+
T Consensus       546 ~~~~~-------------~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~t~sGKi  591 (625)
T TIGR02188       546 LKDGY-------------EPDDELRKELRKHVRKEIGPIA-----KPDKIRFVPGLPKTRSGKI  591 (625)
T ss_pred             eCCCC-------------CCCHHHHHHHHHHHHhhcCCCc-----cCcEEEECCCCCCCCCccc
Confidence            76531             0011123567777777777765     5589999999999999986

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.3e-48  Score=407.87  Aligned_cols=327  Identities=24%  Similarity=0.324  Sum_probs=276.0

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---ch
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AV  133 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---~~  133 (495)
                      .+++.++++|||||||.||+|++||+++..........+++.++|++++.+|++|.+++...+.++..|+++++.   ++
T Consensus       205 ~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~  284 (549)
T PRK07788        205 PPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALGSTVVLRRRFDP  284 (549)
T ss_pred             CCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEEECCCCCH
Confidence            467889999999999999999999999988877777778888999999999999999987777788899998874   68


Q ss_pred             HhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHH
Q 011011          134 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  213 (495)
Q Consensus       134 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  213 (495)
                      ..+++.++++++|.+.++|+++..+++.......                                              
T Consensus       285 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----------------------------------------------  318 (549)
T PRK07788        285 EATLEDIAKHKATALVVVPVMLSRILDLGPEVLA----------------------------------------------  318 (549)
T ss_pred             HHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccC----------------------------------------------
Confidence            8999999999999999999999887653211000                                              


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccCCC-
Q 011011          214 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-  291 (495)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-  291 (495)
                                                 ...+..+|.+++||+++++++ +.+.+.++.++++.||+||++......... 
T Consensus       319 ---------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~  371 (549)
T PRK07788        319 ---------------------------KYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDL  371 (549)
T ss_pred             ---------------------------CCCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhh
Confidence                                       011234589999999999987 555567899999999999987654433221 


Q ss_pred             CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCc
Q 011011          292 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  371 (495)
Q Consensus       292 ~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~  371 (495)
                      ...++++|.|+++++++|+|+ .+++++.|+.|||+++|+.++.||+++++.  + . .+|||+|||++++++       
T Consensus       372 ~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~-~~g~~~TGDl~~~~~-------  439 (549)
T PRK07788        372 AEAPGTVGRPPKGVTVKILDE-NGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I-IDGLLSSGDVGYFDE-------  439 (549)
T ss_pred             hhcCCCcccCCCCcEEEEECC-CcCCCCCCCeEEEEEeCCCccccccCCCcc--c-c-cCCceecCceEEEcC-------
Confidence            235578999999999999995 588899999999999999999999998865  2 2 479999999999998       


Q ss_pred             cccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCCCcC
Q 011011          372 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  447 (495)
Q Consensus       372 ~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  447 (495)
                         +|+++|.||.||+|+. +|++|+|.+||++|.+||.|.+|+|++.+++    .+.++|+++++              
T Consensus       440 ---~g~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~--------------  501 (549)
T PRK07788        440 ---DGLLFVDGRDDDMIVS-GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPG--------------  501 (549)
T ss_pred             ---CCCEEEeccCcceEEE-CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCC--------------
Confidence               8999999999999997 9999999999999999999999999998754    46788887653              


Q ss_pred             CccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          448 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       448 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                        ...+.++++++++++|+.|+     .+++|.++++.+.+.+||+
T Consensus       502 --~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi  540 (549)
T PRK07788        502 --AALDEDAIKDYVRDNLARYK-----VPRDVVFLDELPRNPTGKV  540 (549)
T ss_pred             --CCCCHHHHHHHHHHhhhcCC-----CCcEEEEeCCCCCCCCcCE
Confidence              34567899999999999886     4589999999999999997

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-47  Score=409.03  Aligned_cols=337  Identities=17%  Similarity=0.207  Sum_probs=272.0

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHH-HhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~  131 (495)
                      ...+++|+++|+|||||||.||||+++|++++.... .....+++.++|++++.+|++|+.+... .+.++..|+++++.
T Consensus       240 ~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~  319 (637)
T PRK00174        240 EPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMF  319 (637)
T ss_pred             cccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEE
Confidence            345789999999999999999999999999765433 3445567888999999999999998765 55678999998763


Q ss_pred             -------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          132 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       132 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                             ++..+++.++++++|.+.++|+++..|++......                                      
T Consensus       320 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------  361 (637)
T PRK00174        320 EGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP--------------------------------------  361 (637)
T ss_pred             CCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc--------------------------------------
Confidence                   47889999999999999999999988765311100                                      


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHH-HHcC---CeeeeccCccc
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIG---VKVQVGYGLTE  280 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~-~~~g---~~v~~~YG~TE  280 (495)
                                                         ....+..+|.+++||++++++...++ +.++   +++++.||+||
T Consensus       362 -----------------------------------~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE  406 (637)
T PRK00174        362 -----------------------------------KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTE  406 (637)
T ss_pred             -----------------------------------ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccc
Confidence                                               00122345899999999999875544 4565   78999999999


Q ss_pred             CccceeccCCC--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc--CCcchhccCCchhhhhccC--CCCcc
Q 011011          281 SSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWL  354 (495)
Q Consensus       281 ~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~--p~~~~gY~~~~~~t~~~~~--~~~~~  354 (495)
                      ++..+....+.  ...++++|.|+++++++|+| +.+++++.|+.|||+++|  |++++|||++++.+.+.+.  .+|||
T Consensus       407 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~  485 (637)
T PRK00174        407 TGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMY  485 (637)
T ss_pred             cCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEE
Confidence            98765543322  23467899999999999999 458899999999999999  6999999999999887763  47899


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEec
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVP  430 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~  430 (495)
                      +|||+|++++          +|+++|+||+||+|++ +|++|+|.|||++|.+||.|.+|+|++.++    +.+.++|++
T Consensus       486 ~TGDl~~~d~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~  554 (637)
T PRK00174        486 FTGDGARRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTL  554 (637)
T ss_pred             ECCceEEEcC----------CCcEEEEEecccEEEe-CCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEE
Confidence            9999999998          8999999999999998 899999999999999999999999999865    357788887


Q ss_pred             ChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          431 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      .++.             .......++++++++++|+.++     .++.|.++++.+.+.|||+
T Consensus       555 ~~~~-------------~~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GKi  599 (637)
T PRK00174        555 KGGE-------------EPSDELRKELRNWVRKEIGPIA-----KPDVIQFAPGLPKTRSGKI  599 (637)
T ss_pred             CCCC-------------CCCHHHHHHHHHHHHhhcCCcc-----CCCEEEEcCCCCCCCCcch
Confidence            6530             0001114567788888777776     5589999999999999986

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-47  Score=403.19  Aligned_cols=336  Identities=21%  Similarity=0.307  Sum_probs=276.4

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      ....++++++++|||||||.||||++||+++..........+++.++|++++..|++|.++... .+.++..|+++++. 
T Consensus       200 ~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~  279 (570)
T PRK04319        200 EWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDG  279 (570)
T ss_pred             cccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEEC
Confidence            3456789999999999999999999999999887777777788899999999999999988765 45678899988763 


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++.++|+++..+.+......                                          
T Consensus       280 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------  317 (570)
T PRK04319        280 GRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLV------------------------------------------  317 (570)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCccc------------------------------------------
Confidence               58899999999999999999999988765311000                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHH-HHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                     ....+..+|.+++||+++++++.++ .+.++.++++.||+||++..+..
T Consensus       318 -------------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~  366 (570)
T PRK04319        318 -------------------------------KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIA  366 (570)
T ss_pred             -------------------------------ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEe
Confidence                                           0012334589999999999988554 45689999999999999876554


Q ss_pred             cCCC-CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc--CCcchhccCCchhhhhccCCCCccccCceeeecc
Q 011011          288 RRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  364 (495)
Q Consensus       288 ~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~--p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~  364 (495)
                      .... ...++++|.|.++++++|+|+ .+.++++|+.|||++++  |+++.||+++++.|++.|. +|||+|||++++++
T Consensus       367 ~~~~~~~~~~~~G~p~~g~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~  444 (570)
T PRK04319        367 NYPAMDIKPGSMGKPLPGIEAAIVDD-QGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDE  444 (570)
T ss_pred             cCCCCCCCCCcCcCCCCCCEEEEECC-CCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECC
Confidence            3322 345688999999999999995 47778999999999997  8999999999999999985 89999999999998


Q ss_pred             CCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHH
Q 011011          365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  440 (495)
Q Consensus       365 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~  440 (495)
                                +|+++++||+||+|+. +|++|+|.+||+++.+||.|.+++|++.+++    .+.+++++.++.      
T Consensus       445 ----------~g~l~~~GR~~d~i~~-~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~------  507 (570)
T PRK04319        445 ----------DGYFWFQGRVDDVIKT-SGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGY------  507 (570)
T ss_pred             ----------CeeEEEEecCCCEEEE-CCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCC------
Confidence                      8999999999999998 8999999999999999999999999998764    455777765420      


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          441 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       441 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                             ...+...++++++++++|+.|+     .+++|.++++.+.+.+||+
T Consensus       508 -------~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKv  548 (570)
T PRK04319        508 -------EPSEELKEEIRGFVKKGLGAHA-----APREIEFKDKLPKTRSGKI  548 (570)
T ss_pred             -------CCCHHHHHHHHHHHHHhccccc-----CCcEEEEeCCCCCCCchhh
Confidence                   0011123577788888887776     5589999999999999986

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=9e-48  Score=410.99  Aligned_cols=342  Identities=18%  Similarity=0.175  Sum_probs=272.8

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHH-HHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      ..+++++++|+|||||||.||||+++|+++.. ........++++++|++++..|+.|++++.. .+.++..|+++++. 
T Consensus       228 ~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~  307 (628)
T TIGR02316       228 WLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYE  307 (628)
T ss_pred             ecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeC
Confidence            35789999999999999999999999999754 3445566678899999999999999998754 56679999998874 


Q ss_pred             ------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011          132 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  205 (495)
Q Consensus       132 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (495)
                            ++..+++.++++++|.+..+|+++..|.+.....      .                                 
T Consensus       308 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------~---------------------------------  348 (628)
T TIGR02316       308 GLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW------L---------------------------------  348 (628)
T ss_pred             CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc------c---------------------------------
Confidence                  4678999999999999999999987765421000      0                                 


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHH-HHcCCeeeeccCcccCccc
Q 011011          206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPV  284 (495)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~~  284 (495)
                                                        ....++.+|.+++||+++++++.++. +.++.++++.||+||++..
T Consensus       349 ----------------------------------~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~  394 (628)
T TIGR02316       349 ----------------------------------RKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWP  394 (628)
T ss_pred             ----------------------------------ccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCce
Confidence                                              00123455999999999999885554 5679999999999999854


Q ss_pred             eeccCC----CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccC---CcchhccCCchhhhhcc---CCCCcc
Q 011011          285 IAARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQAL---DEDGWL  354 (495)
Q Consensus       285 ~~~~~~----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p---~~~~gY~~~~~~t~~~~---~~~~~~  354 (495)
                      +.....    .....+++|.|+++++++|+|++++++++.|+.|||+++||   +.+.||+++++.+.+.+   ..++||
T Consensus       395 ~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  474 (628)
T TIGR02316       395 VLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLY  474 (628)
T ss_pred             eecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEE
Confidence            433221    12345789999999999999987899999999999999998   57899999998887765   246899


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEec
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  430 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~  430 (495)
                      +|||+|++++          +|+++|+||.||+|++ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.++|++
T Consensus       475 ~TGD~g~~d~----------dG~l~i~GR~dd~ik~-~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~  543 (628)
T TIGR02316       475 SSFDWGIRDE----------DGYTFILGRTDDVINV-AGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAIL  543 (628)
T ss_pred             ECCceEEEcC----------CCcEEEEEcCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEE
Confidence            9999999998          8999999999999998 8999999999999999999999999998654    46678887


Q ss_pred             ChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          431 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      +++..        ...........++++++++++|+.++     .+++|.++++.+.+.|||+
T Consensus       544 ~~~~~--------~~~~~~~~~~~~~i~~~~~~~L~~~~-----~P~~v~~v~~lP~t~sGKi  593 (628)
T TIGR02316       544 KESDS--------AGDAHDPHAVETGMMDCVVRQLGAVA-----RPARVYFVAALPKTRSGKL  593 (628)
T ss_pred             cCCcc--------cccccchHHHHHHHHHHHHHhcCCCc-----CCCEEEEcCCCCCCCchHH
Confidence            64310        00000011234678888888888776     5589999999999999986

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.8e-47  Score=402.60  Aligned_cols=341  Identities=26%  Similarity=0.322  Sum_probs=270.6

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---c
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A  132 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---~  132 (495)
                      ..++++++++|||||||.||||++||+++..+.......+++.++|++++++|++|++++...+.++..|+++++.   +
T Consensus       169 ~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~v~~~~~~  248 (563)
T PLN02860        169 WAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGACHVLLPKFD  248 (563)
T ss_pred             CCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHHcCceEEecCCCC
Confidence            4679999999999999999999999999987766666667889999999999999999987777788999988774   6


Q ss_pred             hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHH
Q 011011          133 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  212 (495)
Q Consensus       133 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  212 (495)
                      +..+++.++++++|++.++|+++..|+.......                                              
T Consensus       249 ~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~----------------------------------------------  282 (563)
T PLN02860        249 AKAALQAIKQHNVTSMITVPAMMADLISLTRKSM----------------------------------------------  282 (563)
T ss_pred             HHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh----------------------------------------------
Confidence            8899999999999999999999988876421100                                              


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccceeccCC
Q 011011          213 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                 ....+..+|.+++||+++++.+ +.+.+.+ +.++++.||+||++..++....
T Consensus       283 ---------------------------~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  335 (563)
T PLN02860        283 ---------------------------TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTL  335 (563)
T ss_pred             ---------------------------ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccc
Confidence                                       0012234589999999999987 4555666 7899999999998765432211


Q ss_pred             CC-----------------------CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhc
Q 011011          291 TC-----------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQA  347 (495)
Q Consensus       291 ~~-----------------------~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~  347 (495)
                      ..                       ....++|+|+++++++|+|++      +|+.|||+++||.++.||+++|+.|++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY~~~~~~t~~~  409 (563)
T PLN02860        336 HDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETASV  409 (563)
T ss_pred             cccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC------CCceeEEEEecCcccccccCCccccchh
Confidence            10                       112368999999999999854      5789999999999999999999999999


Q ss_pred             cCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----Ce
Q 011011          348 LDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RR  423 (495)
Q Consensus       348 ~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~  423 (495)
                      |..+|||+|||+|++++          +|+++|.||+||+|+. +|++|+|.+||+++.+||.|.+|+|++.++    +.
T Consensus       410 ~~~~g~~~TGDl~~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~  478 (563)
T PLN02860        410 LSNDGWLDTGDIGWIDK----------AGNLWLIGRSNDRIKT-GGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEM  478 (563)
T ss_pred             ccCCCeEEccceEEEcC----------CCCEEEeecccceeEE-CCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCce
Confidence            98899999999999998          8999999999999997 999999999999999999999999999875    35


Q ss_pred             eEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEe-cCCCCCCCCee
Q 011011          424 PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVV-DEPFTVNFLCL  493 (495)
Q Consensus       424 ~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l  493 (495)
                      +.|+|+++++..  +.....-........+.+++++++++ .|+.|+     .+++|.++ ++.+.+.+||+
T Consensus       479 ~~a~v~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~-----~P~~~~~~~~~lP~t~~GKi  543 (563)
T PLN02860        479 VVACVRLRDGWI--WSDNEKENAKKNLTLSSETLRHHCREKNLSRFK-----IPKLFVQWRKPFPLTTTGKI  543 (563)
T ss_pred             EEEEEEECCccc--cccccchhhcccccccHHHHHHHHhhCcccccc-----cceEEEEEecCCCCCcccch
Confidence            778888765310  00000000000123456778888887 488776     45777665 55788889986

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=4.8e-47  Score=400.28  Aligned_cols=328  Identities=22%  Similarity=0.326  Sum_probs=266.4

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEe----
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY----  130 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~----  130 (495)
                      ..+++++++|+|||||||.||+|++||+++...+......+++.++|+.++++|++|++++.       .|.+.++    
T Consensus       170 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-------~g~~~~~~~~~  242 (552)
T PRK09274        170 DLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALFGPA-------LGMTSVIPDMD  242 (552)
T ss_pred             CCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhhhhh-------hCCeEEecCcc
Confidence            45679999999999999999999999999998888777778899999999999999876643       3444433    


Q ss_pred             ------cchHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          131 ------TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       131 ------~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                            .++..+++.++++++|.++++|+++..|.+......                                      
T Consensus       243 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------  284 (552)
T PRK09274        243 PTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANG--------------------------------------  284 (552)
T ss_pred             cccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcC--------------------------------------
Confidence                  357899999999999999999999988876432110                                      


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc--CCeeeeccCcccC
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI--GVKVQVGYGLTES  281 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~--g~~v~~~YG~TE~  281 (495)
                                                           ..+..+|.+++||+++++++ +.+.+.+  |+++++.||+||+
T Consensus       285 -------------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~  327 (552)
T PRK09274        285 -------------------------------------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEA  327 (552)
T ss_pred             -------------------------------------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEcccccccc
Confidence                                                 12233488999999999987 5555667  4699999999999


Q ss_pred             ccceeccCCC----------CCCccccccCcCCcEEEEEeCC--------CCCcCCCCCccEEEEccCCcchhccCCchh
Q 011011          282 SPVIAARRPT----------CNVLGSVGHPINHTEIKIVDAE--------TNEVLPAGSKGIVKVRGSQVMQGYFKNPSA  343 (495)
Q Consensus       282 ~~~~~~~~~~----------~~~~~~~G~p~~~~~v~i~d~~--------~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~  343 (495)
                      +.++......          .....++|+|+++++++|+|++        ++++++.|+.|||+++||.++.||+++|+.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~  407 (552)
T PRK09274        328 LPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEA  407 (552)
T ss_pred             ceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHH
Confidence            8765533211          1122368999999999999963        467899999999999999999999999999


Q ss_pred             hhhccC--CCC--ccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEec
Q 011011          344 TKQALD--EDG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ  419 (495)
Q Consensus       344 t~~~~~--~~~--~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~  419 (495)
                      |...|.  .+|  ||+|||+|++++          +|++++.||.||+|++ +|.+|+|.+||++|.+||.|.+|+|++.
T Consensus       408 t~~~~~~~~~g~~w~~TGDlg~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~v~~~  476 (552)
T PRK09274        408 TRLAKIPDGQGDVWHRMGDLGYLDA----------QGRLWFCGRKAHRVET-AGGTLYTIPCERIFNTHPGVKRSALVGV  476 (552)
T ss_pred             hhhhhcccCCCCcEEEcCCEEEEcc----------CCcEEEEeccCCeEEE-CCEEECcHHHHHHHHhCcccceeEEEEe
Confidence            988763  356  999999999998          8999999999999998 8999999999999999999999999998


Q ss_pred             CCC---eeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCC--CCCee
Q 011011          420 DQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV--NFLCL  493 (495)
Q Consensus       420 ~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l  493 (495)
                      +++   .+.++|++.++                ...+.+++.+.+++.++.+..+  ..+++|.++++.+.+  .|||+
T Consensus       477 ~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~~~--~~~~~~~~~~~lP~t~~~~GKi  537 (552)
T PRK09274        477 GVPGAQRPVLCVELEPG----------------VACSKSALYQELRALAAAHPHT--AGIERFLIHPSFPVDIRHNAKI  537 (552)
T ss_pred             CCCCCceEEEEEEccCc----------------cccchHHHhhhhHHHHHhcCCC--cceeEEeccCCCCccccccccc
Confidence            653   46677777643                2334566888888888877433  467899999988876  68986

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-46  Score=397.12  Aligned_cols=335  Identities=25%  Similarity=0.367  Sum_probs=283.8

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHh-HhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~~--  131 (495)
                      ...++++++|+|||||||.||+|++||++++..+......+++.++|++++.+|++|++++... +.++..|+++++.  
T Consensus       186 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~  265 (546)
T PRK08314        186 TAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR  265 (546)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCC
Confidence            4578999999999999999999999999999888777777788999999999999999998664 4568999999885  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++++++|.+.++|+++..+.......                                             
T Consensus       266 ~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~---------------------------------------------  300 (546)
T PRK08314        266 WDREAAARLIERYRVTHWTNIPTMVVDFLASPGLA---------------------------------------------  300 (546)
T ss_pred             CCHHHHHHHHHHhcCceecccHHHHHHHHhCCCcc---------------------------------------------
Confidence             5788999999999999999999887765421000                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  289 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  289 (495)
                                                    ...+..+|.+++||+++++.+ +++.+.++.++++.||+||++.......
T Consensus       301 ------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  350 (546)
T PRK08314        301 ------------------------------ERDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNP  350 (546)
T ss_pred             ------------------------------ccCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCC
Confidence                                          001122388899999999987 5566678999999999999987766555


Q ss_pred             CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC---CCccccCceeeeccCC
Q 011011          290 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE---DGWLNTGDIGWIAPHH  366 (495)
Q Consensus       290 ~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~---~~~~~TGDl~~~~~~~  366 (495)
                      ......+++|.|+++++++|+|++++++++.|+.|||+++|++++.||+++++.|++.|..   ++||+|||+|++++  
T Consensus       351 ~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~--  428 (546)
T PRK08314        351 PDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDE--  428 (546)
T ss_pred             CcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcC--
Confidence            4445567899999999999999888999999999999999999999999999999988743   45999999999998  


Q ss_pred             CCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHc
Q 011011          367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRL  442 (495)
Q Consensus       367 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~  442 (495)
                              +|++++.||.||+|++ +|++|+|.+||+++.++|.|.+++|++.++    +.+.++++++++.        
T Consensus       429 --------~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~--------  491 (546)
T PRK08314        429 --------EGYFFITDRLKRMINA-SGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEA--------  491 (546)
T ss_pred             --------CCcEEEEecchhhEEe-CCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCC--------
Confidence                    8999999999999998 899999999999999999999999999865    4577888886531        


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          443 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       443 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                            ....+.++++++++++|+.++     .++++.++++.+...+||+.
T Consensus       492 ------~~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t~~GKv~  532 (546)
T PRK08314        492 ------RGKTTEEEIIAWAREHMAAYK-----YPRIVEFVDSLPKSGSGKIL  532 (546)
T ss_pred             ------CCCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCCcccee
Confidence                  012456889999999999886     55899999999999999973

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-46  Score=396.41  Aligned_cols=331  Identities=28%  Similarity=0.463  Sum_probs=273.2

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccC--CCC-CcEEEEECChhhHHHHHHh-HhHhhcCceEEe
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AEN-GDKFLSMLPPWHVYERACG-YFIFSRGIELMY  130 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~--~~~-~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~  130 (495)
                      ...++|+++++|||||||.||||+++|+++..........++  +.. .+++++.+|++|.+++... +..+..|.+.++
T Consensus       203 ~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~  282 (562)
T PRK05677        203 NPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNIL  282 (562)
T ss_pred             CCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEE
Confidence            456799999999999999999999999999876655444332  333 4688999999999998654 345666766554


Q ss_pred             c----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCc
Q 011011          131 T----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  206 (495)
Q Consensus       131 ~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  206 (495)
                      .    ++..+++.++++++|.+.++|+++..++......                                         
T Consensus       283 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------------------------  321 (562)
T PRK05677        283 ISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFR-----------------------------------------  321 (562)
T ss_pred             ecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccc-----------------------------------------
Confidence            2    4678899999999999999999987765421000                                         


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccce
Q 011011          207 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI  285 (495)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~  285 (495)
                                                        ...+..+|.+++||+++++.+ +.+.+.+++++++.||+||++.++
T Consensus       322 ----------------------------------~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~  367 (562)
T PRK05677        322 ----------------------------------KLDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVV  367 (562)
T ss_pred             ----------------------------------cCChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcce
Confidence                                              001123489999999999987 445566799999999999998776


Q ss_pred             eccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          286 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       286 ~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      .........++++|.|+++++++|+|++ ++++|.|+.|||+++||.++.||+++++.|++.|..+|||+|||+|++++ 
T Consensus       368 ~~~~~~~~~~~~vG~~~~~~~v~i~d~~-~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~-  445 (562)
T PRK05677        368 SVNPSQAIQVGTIGIPVPSTLCKVIDDD-GNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE-  445 (562)
T ss_pred             eecCccCCCCCccCccCCCCEEEEECCC-CCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECC-
Confidence            6555444566789999999999999964 78899999999999999999999999999999998899999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~  441 (495)
                               +|.+++.||++|+|++ +|++|+|.+||++|.+||.|.+++|++.++.    .+.+++++.+.        
T Consensus       446 ---------~G~l~i~GR~~d~i~~-~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~--------  507 (562)
T PRK05677        446 ---------DGYMRIVDRKKDMILV-SGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPG--------  507 (562)
T ss_pred             ---------CCcEEEEecCcCeEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCC--------
Confidence                     8999999999999998 7999999999999999999999999998753    45567775532        


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          442 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                              ...+.+++++++++.|+.++     .+++|.++++.+.+.+||+
T Consensus       508 --------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~t~sGKi  546 (562)
T PRK05677        508 --------ETLTKEQVMEHMRANLTGYK-----VPKAVEFRDELPTTNVGKI  546 (562)
T ss_pred             --------CCCCHHHHHHHHHHhhhhcc-----CCcEEEEeccCCCCCcccc
Confidence                    34567889999999999987     5589999999999999986

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.8e-47  Score=403.56  Aligned_cols=338  Identities=21%  Similarity=0.268  Sum_probs=266.7

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---  131 (495)
                      ...++++++|+|||||||.||||++||+++..........+++.++|++++++|++|++++...+.++..|+++++.   
T Consensus       176 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~  255 (631)
T PRK07769        176 EANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPA  255 (631)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChH
Confidence            35679999999999999999999999999988777777777888999999999999999998777777778887764   


Q ss_pred             ----chHhHHHHHhHhCC---cEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          132 ----AVRNLKDDLQRYQP---HYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       132 ----~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                          ++..+++.++++++   +.+..+|.++..+......     +..                                
T Consensus       256 ~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~-----~~~--------------------------------  298 (631)
T PRK07769        256 AFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGL-----PKD--------------------------------  298 (631)
T ss_pred             HHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhcc-----chh--------------------------------
Confidence                45567888888876   7888999887665432000     000                                


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc---CC---eeeeccC
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---GV---KVQVGYG  277 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~---g~---~v~~~YG  277 (495)
                                                       ..-...++++|.+++||++++++. +.+.+.+   |.   .++++||
T Consensus       299 ---------------------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG  345 (631)
T PRK07769        299 ---------------------------------GEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYG  345 (631)
T ss_pred             ---------------------------------cccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccc
Confidence                                             000012334588999999999886 5555655   33   5899999


Q ss_pred             cccCccceeccCCCC---------------------------CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc
Q 011011          278 LTESSPVIAARRPTC---------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG  330 (495)
Q Consensus       278 ~TE~~~~~~~~~~~~---------------------------~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~  330 (495)
                      +||++..++......                           ....++|+|.++..++|+|+++++++|.|+.|||+++|
T Consensus       346 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~g  425 (631)
T PRK07769        346 MAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHG  425 (631)
T ss_pred             hhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecC
Confidence            999876655432111                           01247899999999999998889999999999999999


Q ss_pred             CCcchhccCCchhhhhccCC-----------------CCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCc
Q 011011          331 SQVMQGYFKNPSATKQALDE-----------------DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTG  393 (495)
Q Consensus       331 p~~~~gY~~~~~~t~~~~~~-----------------~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G  393 (495)
                      |+++.|||++++.|++.|..                 +|||+|||+|+++           +|+++|+||+||+|++ +|
T Consensus       426 p~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-----------dG~l~i~GR~~d~Ik~-~G  493 (631)
T PRK07769        426 NNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-----------DGELYITGRVKDLVII-DG  493 (631)
T ss_pred             CCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-----------CCEEEEEcccccEEEE-CC
Confidence            99999999999999998842                 4899999999984           5999999999999998 89


Q ss_pred             eeecchHHHHHHhc-Ccccce--EEEEecCCC-----------------------eeEEEEecChHHHHHHHHHcCCCcC
Q 011011          394 ENVEPLELEEAALR-SSLIRQ--IVVIGQDQR-----------------------RPGAIIVPDKEEVLMAAKRLSIVHA  447 (495)
Q Consensus       394 ~~v~~~~IE~~l~~-~p~V~~--~~vvg~~~~-----------------------~~~a~vv~~~~~~~~~~~~~~~~~~  447 (495)
                      ++|+|.|||++|.+ ||.|.+  ++|++.++.                       .++++|++.++              
T Consensus       494 ~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~--------------  559 (631)
T PRK07769        494 RNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPG--------------  559 (631)
T ss_pred             eeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCc--------------
Confidence            99999999999996 899998  899988762                       35667766532              


Q ss_pred             CccccChHHHHHHHHHHHHh-HhccCCCccccEEEec--CCCCCCCCee
Q 011011          448 DASELSKEKTISLLYGELRK-WTSKCSFQIGPIHVVD--EPFTVNFLCL  493 (495)
Q Consensus       448 ~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~--~~~~~~~~~l  493 (495)
                       ....+..+|.++++++|.. ++    ..++.+.+++  +.+.+.+||+
T Consensus       560 -~~~~~~~~l~~~~~~~l~~~~~----~~p~~~~~v~~~~lP~t~~GKi  603 (631)
T PRK07769        560 -AHKLDPQPIADDIRAAIAVRHG----VTVRDVLLVPAGSIPRTSSGKI  603 (631)
T ss_pred             -cccccHHHHHHHHHHHHHHHcC----CCccEEEEECCCccccCCCcHH
Confidence             0234678899999999986 33    1346788887  5888888885

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-46  Score=407.84  Aligned_cols=329  Identities=23%  Similarity=0.332  Sum_probs=269.4

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh-cccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY-DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      ...++++++++|||||||.||||+++|+++......+. ..+++.++|++++..|++|.+++.. .+.++..|+++++. 
T Consensus       141 ~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~  220 (705)
T PRK06060        141 PMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINS  220 (705)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeC
Confidence            35678999999999999999999999999987765543 4567888999999999999988754 45668889888874 


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+...++++++|+++++|+++..++.....                                            
T Consensus       221 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--------------------------------------------  256 (705)
T PRK06060        221 APVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP--------------------------------------------  256 (705)
T ss_pred             CCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc--------------------------------------------
Confidence               467778889999999999999999877643110                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcccee
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  286 (495)
                                                       ..+..+|.+++||+++++.+ +.+.+.+ +.++++.||+||++..+.
T Consensus       257 ---------------------------------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  303 (705)
T PRK06060        257 ---------------------------------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFV  303 (705)
T ss_pred             ---------------------------------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEE
Confidence                                             11233589999999999987 5556667 589999999999986654


Q ss_pred             ccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCC
Q 011011          287 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  366 (495)
Q Consensus       287 ~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~  366 (495)
                      .........+++|+|+++++++|+|++ +++++.|+.|||+|+|++++.||+++|+.+.   ..++||+|||+|++++  
T Consensus       304 ~~~~~~~~~~~iG~p~~~~~v~i~d~~-g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~--  377 (705)
T PRK06060        304 SNRVDEWRLGTLGRVLPPYEIRVVAPD-GTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDS--  377 (705)
T ss_pred             eccCCCCCcCcccccCCCcEEEEECCC-CCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECC--
Confidence            433333456789999999999999954 7899999999999999999999999998753   3579999999999998  


Q ss_pred             CCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHc
Q 011011          367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRL  442 (495)
Q Consensus       367 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~  442 (495)
                              +|+++++||+||+||+ +|++|+|.|||++|.+||.|.+++|++.++    +.+.++|++.....       
T Consensus       378 --------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~-------  441 (705)
T PRK06060        378 --------DGWVTYRCRADDTEVI-GGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGAT-------  441 (705)
T ss_pred             --------CceEEEecccCceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccC-------
Confidence                    8999999999999998 899999999999999999999999999865    35778888754200       


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          443 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       443 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                            .......+++++++++|+.|+     .+.+|.++++.+.+.|||+
T Consensus       442 ------~~~~~~~~i~~~l~~~L~~~~-----~P~~i~~v~~iP~t~~GKi  481 (705)
T PRK06060        442 ------IDGSVMRDLHRGLLNRLSAFK-----VPHRFAVVDRLPRTPNGKL  481 (705)
T ss_pred             ------cChHHHHHHHHHHHHhCCCCc-----CCcEEEEeecCCCCcchhh
Confidence                  001113578888888888887     4488999999999999986

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=2.3e-46  Score=393.70  Aligned_cols=332  Identities=29%  Similarity=0.451  Sum_probs=277.1

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh----cccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEE
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY----DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELM  129 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~----~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~  129 (495)
                      ..+++++++++|||||||.||+|++||+++........    ..+++.++|++++.+|++|++++.. .+.++..|++++
T Consensus       175 ~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~  254 (537)
T PLN02246        175 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAIL  254 (537)
T ss_pred             CCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEE
Confidence            45689999999999999999999999999987665432    2466889999999999999999866 445688999998


Q ss_pred             ec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCc
Q 011011          130 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  206 (495)
Q Consensus       130 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  206 (495)
                      +.   ++..+++.++++++|.+.++|+++..|.+.....                                         
T Consensus       255 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------------------------  293 (537)
T PLN02246        255 IMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVE-----------------------------------------  293 (537)
T ss_pred             EeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcccc-----------------------------------------
Confidence            84   5788999999999999999999988775421100                                         


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHc-CCeeeeccCcccCccc
Q 011011          207 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPV  284 (495)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~  284 (495)
                                                        ...+..+|.+++||+++++++. .+.+.+ +..+++.||+||++.+
T Consensus       294 ----------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  339 (537)
T PLN02246        294 ----------------------------------KYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPV  339 (537)
T ss_pred             ----------------------------------ccCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcc
Confidence                                              0112234889999999999874 455566 6789999999999866


Q ss_pred             eeccCC-----CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCce
Q 011011          285 IAARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  359 (495)
Q Consensus       285 ~~~~~~-----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl  359 (495)
                      ++....     ....++++|+|+++++++++|++++++++.|+.|||+++|+.++.||+++++.+++.|..++||+|||+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~  419 (537)
T PLN02246        340 LAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDI  419 (537)
T ss_pred             cccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecce
Confidence            543211     123457899999999999999888999999999999999999999999999999999988999999999


Q ss_pred             eeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHH
Q 011011          360 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  435 (495)
Q Consensus       360 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~  435 (495)
                      |++++          +|++++.||.||+|+. +|++|+|.+||+++.+||.|.+++|++.++.    .+.+++++.++  
T Consensus       420 ~~~~~----------~g~l~~~GR~dd~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--  486 (537)
T PLN02246        420 GYIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNG--  486 (537)
T ss_pred             EEEeC----------CCeEEEEecccceEEE-CCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCC--
Confidence            99998          8999999999999998 8999999999999999999999999997643    46677776543  


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          436 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                    ...+.+++++++++.|+.++     .+++|.++++.+.+.+||+
T Consensus       487 --------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~~~~~P~t~~GKi  525 (537)
T PLN02246        487 --------------SEITEDEIKQFVAKQVVFYK-----RIHKVFFVDSIPKAPSGKI  525 (537)
T ss_pred             --------------CCCCHHHHHHHHHhhCcCcc-----ccceEEEeccCCCCCcchh
Confidence                          34567889999999988886     5589999999999999986

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=3.4e-46  Score=393.14  Aligned_cols=329  Identities=25%  Similarity=0.385  Sum_probs=275.9

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~--  131 (495)
                      ..+++++++++|||||||.||+|++||+++......+...+++.++|++++++|++|.+++.. .+.++..|+++++.  
T Consensus       193 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~  272 (547)
T PRK13295        193 RPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDI  272 (547)
T ss_pred             CCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCC
Confidence            356799999999999999999999999999888777777788899999999999999998766 45568999998875  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++++++|.+.++|+++..+.......                                             
T Consensus       273 ~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~---------------------------------------------  307 (547)
T PRK13295        273 WDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES---------------------------------------------  307 (547)
T ss_pred             CCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc---------------------------------------------
Confidence             6889999999999999999999998776532110                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  289 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  289 (495)
                                                    ...++.+|.+++||+++++++ ..+.+.+++++++.||+||++.+.....
T Consensus       308 ------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  357 (547)
T PRK13295        308 ------------------------------GRPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKL  357 (547)
T ss_pred             ------------------------------CCCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccC
Confidence                                          012234589999999999998 4455668999999999999987655433


Q ss_pred             CC--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCC
Q 011011          290 PT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  367 (495)
Q Consensus       290 ~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~  367 (495)
                      ..  .....++|.|+++++++|+|+ ++++++.|+.|||+|+|+.++.||+++|+.|+..  .+|||+|||+|++++   
T Consensus       358 ~~~~~~~~~~~G~~~~~~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~---  431 (547)
T PRK13295        358 DDPDERASTTDGCPLPGVEVRVVDA-DGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDA---  431 (547)
T ss_pred             CCcchhccCccccccCCcEEEEECC-CCCCCCCCCCCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcC---
Confidence            22  223467899999999999995 4788999999999999999999999999999876  478999999999998   


Q ss_pred             CCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcC
Q 011011          368 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS  443 (495)
Q Consensus       368 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~  443 (495)
                             +|.+++.||.||+|++ +|++|+|.+||++|.+||.|.+++|++.++.    .+.++|++.++          
T Consensus       432 -------~g~l~~~gR~~~~i~~-~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~----------  493 (547)
T PRK13295        432 -------DGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPG----------  493 (547)
T ss_pred             -------CceEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCC----------
Confidence                   8999999999999997 8999999999999999999999999997643    57788887643          


Q ss_pred             CCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          444 IVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       444 ~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                            ...+.+++.+++++ .++.++     .+++|.++++.+.+.+||+
T Consensus       494 ------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~lP~t~sgK~  533 (547)
T PRK13295        494 ------QSLDFEEMVEFLKAQKVAKQY-----IPERLVVRDALPRTPSGKI  533 (547)
T ss_pred             ------CCCCHHHHHHHHHhccCcccc-----CCcEEEEeccCCCCCCccc
Confidence                  23455778888876 577776     5588999999999999987

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.1e-46  Score=392.51  Aligned_cols=327  Identities=23%  Similarity=0.318  Sum_probs=256.7

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCC-CCcEEEEECChhhHHHHHHhHhHhhcCceEEecc--
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE-NGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--  132 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~-~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~--  132 (495)
                      ..++|+++|+|||||||.||||++||+++.+.+......+++. ++|++++++|++|.+++...+.++..|+++++.+  
T Consensus       149 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~  228 (525)
T PRK05851        149 PDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAPTT  228 (525)
T ss_pred             CCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcCHH
Confidence            4679999999999999999999999999998888777778888 8999999999999999987777899999998743  


Q ss_pred             -----hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          133 -----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       133 -----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                           +..+++.++++++|.+. +|.++..++........                                        
T Consensus       229 ~~~~~~~~~~~~i~~~~~t~~~-~p~~~~~~l~~~~~~~~----------------------------------------  267 (525)
T PRK05851        229 AFSASPFRWLSWLSDSRATLTA-APNFAYNLIGKYARRVS----------------------------------------  267 (525)
T ss_pred             HHHHCHHHHHHHHHHhCCeEEe-CCcHHHHHHHHhhcccc----------------------------------------
Confidence                 55788999999999774 45554443321110000                                        


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHH---cCC---eeeeccCccc
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA---IGV---KVQVGYGLTE  280 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~---~g~---~v~~~YG~TE  280 (495)
                                                       ...++.+|.+++||+++++++ +.+.+.   +|.   .+++.||+||
T Consensus       268 ---------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE  314 (525)
T PRK05851        268 ---------------------------------DVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAE  314 (525)
T ss_pred             ---------------------------------CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhh
Confidence                                             001122388899999999886 445443   454   4999999999


Q ss_pred             CccceeccCCC---------------CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhh
Q 011011          281 SSPVIAARRPT---------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK  345 (495)
Q Consensus       281 ~~~~~~~~~~~---------------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~  345 (495)
                      ++..++...+.               ....+++|+|+++++++|+|++++.++|.|+.|||+++|++++.||+++++.+ 
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-  393 (525)
T PRK05851        315 STCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-  393 (525)
T ss_pred             hceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-
Confidence            97665543221               12346799999999999999876677999999999999999999999998753 


Q ss_pred             hccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC---
Q 011011          346 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR---  422 (495)
Q Consensus       346 ~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~---  422 (495)
                          .++||+|||+|+++           +|+++|+||+||+|++ +|++|+|.|||++|.+||.|.+|+|++.+++   
T Consensus       394 ----~~~~~~TGDl~~~~-----------~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~  457 (525)
T PRK05851        394 ----PDDWFPTGDLGYLV-----------DGGLVVCGRAKELITV-AGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGS  457 (525)
T ss_pred             ----CCCceeccceEEEE-----------CCEEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCcccceEEEEEecCCC
Confidence                47899999999886           4999999999999998 8999999999999999999999999987542   


Q ss_pred             -eeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEec--CCCCCCCCee
Q 011011          423 -RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL  493 (495)
Q Consensus       423 -~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l  493 (495)
                       ...++|+...                 ...+.+++.+.++++|+.+..   ..++++.+++  +.+.+.+||+
T Consensus       458 ~~~~~~v~~~~-----------------~~~~~~~~~~~~~~~l~~~l~---~~P~~~~~v~~~~lP~t~~GKi  511 (525)
T PRK05851        458 ARPGLVIAAEF-----------------RGPDEAGARSEVVQRVASECG---VVPSDVVFVAPGSLPRTSSGKL  511 (525)
T ss_pred             CceeEEEEEEe-----------------cCcchHHHHHHHHHHHHHHhC---CCccEEEEECCCCcCcCcchHH
Confidence             3445554321                 112345677888888888731   2557899998  8999999986

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=4.6e-46  Score=390.52  Aligned_cols=332  Identities=21%  Similarity=0.336  Sum_probs=276.3

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH--hHhHhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~--~~~~~~~G~~~~~~  131 (495)
                      ....++++++++|||||||.||+|++||+++...+......+.++.+|++++.+|++|++++..  .+.++..|+++++.
T Consensus       178 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~  257 (527)
T TIGR02275       178 PPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLA  257 (527)
T ss_pred             CCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEEC
Confidence            3457899999999999999999999999999888777777778889999999999999999764  45668889988873


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.+++++++++.++|+++..+........                                          
T Consensus       258 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------------------  295 (527)
T TIGR02275       258 PDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR------------------------------------------  295 (527)
T ss_pred             CCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC------------------------------------------
Confidence               57889999999999999999999987755321100                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                       ..+..+|.+++||++++..+. .+.+.+|.++++.||+||++.....
T Consensus       296 ---------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~  342 (527)
T TIGR02275       296 ---------------------------------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTR  342 (527)
T ss_pred             ---------------------------------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccC
Confidence                                             112334889999999999984 4556689999999999996543322


Q ss_pred             cC-CCCCCccccccCc-CCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          288 RR-PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       288 ~~-~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      .. ......+++|+|+ ++..++++|+ .+++++.|+.|||+++|+.++.||+++++.+++.|..+|||+|||+|++++ 
T Consensus       343 ~~~~~~~~~~~~G~~~~~~~~v~i~d~-~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~-  420 (527)
T TIGR02275       343 LDDPAEIIFTTQGRPMSPDDEVRVVDD-HGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTP-  420 (527)
T ss_pred             CCCccccccccCCCCCCCCceEEEECC-CCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcC-
Confidence            11 1223446789999 4889999994 588999999999999999999999999999999998899999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~  441 (495)
                               +|++++.||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.++|+++.+        
T Consensus       421 ---------~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~--------  482 (527)
T TIGR02275       421 ---------EGYIVVVGRAKDQINR-GGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP--------  482 (527)
T ss_pred             ---------CccEEEEecccceeec-CCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC--------
Confidence                     8999999999999996 8999999999999999999999999998754    46688887642        


Q ss_pred             cCCCcCCccccChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          442 LSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                               ..+..+++++++++ ++.++     .+.+|.++++.+.+.+||+.
T Consensus       483 ---------~~~~~~l~~~l~~~~l~~~~-----~P~~i~~v~~iP~t~sGKv~  522 (527)
T TIGR02275       483 ---------ALKAAQLRRFLRERGLAEYK-----LPDRVEFIDSLPLTAVGKID  522 (527)
T ss_pred             ---------CCCHHHHHHHHHhCCCcccc-----CCCEEEEeccCCCCCcccee
Confidence                     24567888888874 77775     55899999999999999973

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.7e-46  Score=387.66  Aligned_cols=330  Identities=24%  Similarity=0.369  Sum_probs=276.6

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHh-HhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~~--  131 (495)
                      ...++++++++|||||||.||+|++||+++..........+++..+|++++++|++|.+++... +.++..|+++++.  
T Consensus       145 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~  224 (496)
T PRK06839        145 EKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRK  224 (496)
T ss_pred             CCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccC
Confidence            4567899999999999999999999999987665555556678899999999999999998764 4568889888774  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++++++|++.++|+++..++......                                             
T Consensus       225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  259 (496)
T PRK06839        225 FEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE---------------------------------------------  259 (496)
T ss_pred             CCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc---------------------------------------------
Confidence             6889999999999999999999998876532110                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                    ...+..+|.+++||+++++.+.+.++..|+++.+.||+||++..+.....
T Consensus       260 ------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~  309 (496)
T PRK06839        260 ------------------------------TTNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSE  309 (496)
T ss_pred             ------------------------------cCCCcccceEEECCCCCCHHHHHHHHHhCCeeEeeccCCCCCcceEeccc
Confidence                                          01123348899999999998855555559999999999999865443322


Q ss_pred             C--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011          291 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  368 (495)
Q Consensus       291 ~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~  368 (495)
                      .  ....+++|.|+++++++|+|++ ++.++.|+.|||+|+|+.++.||+++++.++..+ .+|||+|||++++++    
T Consensus       310 ~~~~~~~~~~G~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~----  383 (496)
T PRK06839        310 EDARRKVGSIGKPVLFCDYELIDEN-KNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDE----  383 (496)
T ss_pred             ccccccCCCCcccCCCceEEEECCC-cCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcC----
Confidence            1  2456789999999999999966 5569999999999999999999999999998887 489999999999998    


Q ss_pred             CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011          369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  444 (495)
Q Consensus       369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  444 (495)
                            +|++++.||.+|+|+. +|++|+|.+||+++.++|.|.+++|++.++.    .+.++|+++++           
T Consensus       384 ------~g~~~~~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-----------  445 (496)
T PRK06839        384 ------DGFVYIVGRKKEMIIS-GGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSS-----------  445 (496)
T ss_pred             ------CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC-----------
Confidence                  8999999999999996 8999999999999999999999999998764    46788888653           


Q ss_pred             CcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          445 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                           ...+.+++++++++.|+.++     .+++|.++++.+.+.+||+
T Consensus       446 -----~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~~P~t~~GKi  484 (496)
T PRK06839        446 -----SVLIEKDVIEHCRLFLAKYK-----IPKEIVFLKELPKNATGKI  484 (496)
T ss_pred             -----CCCCHHHHHHHHHhhCcCCC-----CCcEEEEeccCCCCccccc
Confidence                 34466889999999888875     5588999999999999997

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.7e-46  Score=383.85  Aligned_cols=326  Identities=26%  Similarity=0.394  Sum_probs=275.1

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec---
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT---  131 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~---  131 (495)
                      ..++|+++++|||||||.||+|++||+++...+......++...+|++++.+|++|.+++.. .+.++..|+++++.   
T Consensus       125 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~  204 (471)
T PRK07787        125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRP  204 (471)
T ss_pred             CCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCC
Confidence            46789999999999999999999999999988877777788889999999999999999876 45568899998874   


Q ss_pred             chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHH
Q 011011          132 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  211 (495)
Q Consensus       132 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  211 (495)
                      ++..+++.++ ++++.+.++|+++..+.+....                                               
T Consensus       205 ~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-----------------------------------------------  236 (471)
T PRK07787        205 TPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-----------------------------------------------  236 (471)
T ss_pred             CHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-----------------------------------------------
Confidence            6889999999 9999999999999877642100                                               


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          212 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                   ...+..+|.+++||+++++.+ +.+.+.++.++++.||+||++........
T Consensus       237 -----------------------------~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~  287 (471)
T PRK07787        237 -----------------------------ARALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD  287 (471)
T ss_pred             -----------------------------cccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC
Confidence                                         011233488999999999887 44555689999999999999866554433


Q ss_pred             CCCCccccccCcCCcEEEEEeCCCCCcCC-CCC-ccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011          291 TCNVLGSVGHPINHTEIKIVDAETNEVLP-AGS-KGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  368 (495)
Q Consensus       291 ~~~~~~~~G~p~~~~~v~i~d~~~~~~~~-~g~-~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~  368 (495)
                      .....+++|.|++++.++|+|++ +.+++ .|+ .|||+++|+.++.||+++++.|++.|..++||+|||+|++++    
T Consensus       288 ~~~~~~~vG~~~~g~~~~i~d~~-~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~----  362 (471)
T PRK07787        288 GERRPGWVGLPLAGVETRLVDED-GGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDP----  362 (471)
T ss_pred             CcccCCcccccCCCcEEEEECCC-CCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcC----
Confidence            34456789999999999999965 67776 454 899999999999999999999999998899999999999998    


Q ss_pred             CCccccCCeEEEEccc-cceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHcC
Q 011011          369 GRSRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLS  443 (495)
Q Consensus       369 ~~~~~~~G~l~i~GR~-~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~~  443 (495)
                            +|++++.||+ ||+++. +|++|+|.+||++|.++|.|.+++|++.++    ..+.++|++.            
T Consensus       363 ------dg~l~~~GR~~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~------------  423 (471)
T PRK07787        363 ------DGMHRIVGRESTDLIKS-GGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA------------  423 (471)
T ss_pred             ------CCCEEEeCCCCceeEee-CCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC------------
Confidence                  8999999996 788886 899999999999999999999999999865    3566788863            


Q ss_pred             CCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          444 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       444 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                            ...+.+++.+++++.|+.++     .+.+|.++++.+...+||+
T Consensus       424 ------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~~iP~~~~GKi  462 (471)
T PRK07787        424 ------DDVAADELIDFVAQQLSVHK-----RPREVRFVDALPRNAMGKV  462 (471)
T ss_pred             ------CCCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCCCccc
Confidence                  23456789999999998886     5578999999999999986

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.6e-46  Score=389.85  Aligned_cols=327  Identities=22%  Similarity=0.317  Sum_probs=272.1

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEe---cch
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY---TAV  133 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~---~~~  133 (495)
                      .+++.++++|||||||.||||+++|+++......+...+....++++++.+|++|++++...+.++..|+++++   +++
T Consensus       194 ~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~~~~  273 (537)
T PRK13382        194 TGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRRFDP  273 (537)
T ss_pred             CCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCCcCH
Confidence            56889999999999999999999999887777766666778889999999999999998767777888998887   468


Q ss_pred             HhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHH
Q 011011          134 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  213 (495)
Q Consensus       134 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  213 (495)
                      ..+++.++++++|++.++|+++..++........                                              
T Consensus       274 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~----------------------------------------------  307 (537)
T PRK13382        274 EATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRN----------------------------------------------  307 (537)
T ss_pred             HHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcc----------------------------------------------
Confidence            8999999999999999999999887653111000                                              


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccCCC-
Q 011011          214 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-  291 (495)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-  291 (495)
                                                 ...+..+|.+++||+++++++ ..+.+.++.++++.||+||++.++...... 
T Consensus       308 ---------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  360 (537)
T PRK13382        308 ---------------------------RYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADL  360 (537)
T ss_pred             ---------------------------cCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHh
Confidence                                       001123488999999999887 566667898999999999998766543321 


Q ss_pred             CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCc
Q 011011          292 CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRS  371 (495)
Q Consensus       292 ~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~  371 (495)
                      ....+++|+|+++++++|+|+ .++++|.|+.|||+++||+++.||+  ++.++. + .+|||+|||++++++       
T Consensus       361 ~~~~~~vG~p~~~~~~~i~d~-~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~-------  428 (537)
T PRK13382        361 RAAPDTAGRPAEGTEIRILDQ-DFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDE-------  428 (537)
T ss_pred             ccCCCCccccCcCcEEEEECC-CCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeC-------
Confidence            235678999999999999996 4788999999999999999999998  455544 3 379999999999998       


Q ss_pred             cccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCCCcC
Q 011011          372 RRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHA  447 (495)
Q Consensus       372 ~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~  447 (495)
                         +|++++.||+||+|+. +|++|+|.+||++|.+||.|.+++|++.++.    .+.++|++.++              
T Consensus       429 ---~g~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~--------------  490 (537)
T PRK13382        429 ---NGRLFVVGRDDEMIVS-GGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPG--------------  490 (537)
T ss_pred             ---CCcEEEeccccceeEE-CCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCC--------------
Confidence               8999999999999997 8999999999999999999999999998754    36788887643              


Q ss_pred             CccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          448 DASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       448 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                        ...+.+++++++++.|+.++     .++++.++++.+.+.+||+
T Consensus       491 --~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~gK~  529 (537)
T PRK13382        491 --ASATPETLKQHVRDNLANYK-----VPRDIVVLDELPRGATGKI  529 (537)
T ss_pred             --CCCCHHHHHHHHHHhccCCC-----CCcEEEEeccCCCCCCCCC
Confidence              23456889999999999886     4478999999999999986

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.6e-46  Score=396.31  Aligned_cols=342  Identities=22%  Similarity=0.247  Sum_probs=268.1

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHH-HHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ-IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      ..+++|+++|+|||||||.||||+++|++++.. ...+...+++.++|++++..|+.|+++... .+.++..|+++++. 
T Consensus       229 ~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~  308 (629)
T PRK10524        229 WLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYE  308 (629)
T ss_pred             eeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEEC
Confidence            356899999999999999999999999987543 334455677889999999999999888654 56678889888763 


Q ss_pred             ------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011          132 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  205 (495)
Q Consensus       132 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (495)
                            ++..+++.++++++|++.++|+++..+.......      ..                                
T Consensus       309 g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------~~--------------------------------  350 (629)
T PRK10524        309 GLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPAL------LR--------------------------------  350 (629)
T ss_pred             CCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCccc------cc--------------------------------
Confidence                  3678999999999999999999987764421000      00                                


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHH-HHcCCeeeeccCcccCccc
Q 011011          206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPV  284 (495)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~~  284 (495)
                                                         ...+..+|.+++||+++++++.+++ +.+++++++.||+||++..
T Consensus       351 -----------------------------------~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~  395 (629)
T PRK10524        351 -----------------------------------KHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWP  395 (629)
T ss_pred             -----------------------------------ccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccch
Confidence                                               0112335899999999999885554 5689999999999999743


Q ss_pred             eeccCC----CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccC---CcchhccCCchhhhhccC---CCCcc
Q 011011          285 IAARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALD---EDGWL  354 (495)
Q Consensus       285 ~~~~~~----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p---~~~~gY~~~~~~t~~~~~---~~~~~  354 (495)
                      +.....    .....+++|.|+++++++|+|++++++++.|+.|||+++||   +++.||+++++.+.+.+.   .++||
T Consensus       396 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (629)
T PRK10524        396 ILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVY  475 (629)
T ss_pred             hhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEE
Confidence            322221    12346789999999999999976799999999999999998   578999999988876542   46899


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEec
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  430 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~  430 (495)
                      +|||+|++++          +|+++|.||.||+|++ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.++|++
T Consensus       476 ~TGDl~~~d~----------dG~l~i~GR~dd~i~~-~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~  544 (629)
T PRK10524        476 STFDWGIRDA----------DGYYFILGRTDDVINV-AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVP  544 (629)
T ss_pred             EcCCcEEEcC----------CCcEEEEEEecCeEEe-CCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEE
Confidence            9999999998          8999999999999998 7999999999999999999999999998764    46788887


Q ss_pred             ChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          431 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      +.+...        ..........++++++++++|+.++     .+++|.++++.+.+.+||+
T Consensus       545 ~~~~~~--------~~~~~~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v~~lP~T~sGKi  594 (629)
T PRK10524        545 KDSDSL--------ADREARLALEKEIMALVDSQLGAVA-----RPARVWFVSALPKTRSGKL  594 (629)
T ss_pred             CCCCcc--------ccccchHHHHHHHHHHHHhhcCCCc-----CCCEEEEcCCCCCCCCcch
Confidence            643100        0000001123566777777777665     5589999999999999986

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-45  Score=384.02  Aligned_cols=333  Identities=31%  Similarity=0.504  Sum_probs=283.8

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHh-HhHhhcCceEEec-
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT-  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~~-  131 (495)
                      ....++++++++|||||||.||+|.+||+++...+..+...+++.++|++++.+|++|.+++... +.++..|+++++. 
T Consensus       161 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~  240 (513)
T PRK07656        161 PEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLP  240 (513)
T ss_pred             CCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecC
Confidence            34578999999999999999999999999998888887788889999999999999999998764 5568899988874 


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..+++.++++++|++.++|+++..+.+......                                           
T Consensus       241 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------------------------------  277 (513)
T PRK07656        241 VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA-------------------------------------------  277 (513)
T ss_pred             cCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC-------------------------------------------
Confidence              68899999999999999999999988865321100                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCC-eeeeccCcccCccceec
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAA  287 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~~~  287 (495)
                                                      ..+..+|.+++||+++++.+ +.+.+.++. ++++.||+||++++...
T Consensus       278 --------------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  325 (513)
T PRK07656        278 --------------------------------EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTF  325 (513)
T ss_pred             --------------------------------CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceee
Confidence                                            12234589999999999987 555667888 89999999999877776


Q ss_pred             cCCCCC---CccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeecc
Q 011011          288 RRPTCN---VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  364 (495)
Q Consensus       288 ~~~~~~---~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~  364 (495)
                      +.....   ..+++|.|+++++++++|+ .+++++.|+.|||+++|+.++.||+++++.+...+..++||+|||+|++++
T Consensus       326 ~~~~~~~~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~  404 (513)
T PRK07656        326 NRLDDDRKTVAGTIGTAIAGVENKIVNE-LGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDE  404 (513)
T ss_pred             cCccccccccCCCccccCCCcEEEEECC-CCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcC
Confidence            554322   2578999999999999995 588999999999999999999999999999999887799999999999988


Q ss_pred             CCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHH
Q 011011          365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  440 (495)
Q Consensus       365 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~  440 (495)
                                +|.++++||.||+|++ +|.+++|.+||++|.++|+|.+++|++.++.    .+.++|+++..       
T Consensus       405 ----------~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~-------  466 (513)
T PRK07656        405 ----------EGYLYIVDRKKDMFIV-GGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPG-------  466 (513)
T ss_pred             ----------CeeEEEEecccceEEe-CCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCC-------
Confidence                      7999999999999998 8999999999999999999999999987653    35677777532       


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          441 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       441 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                               ...+.+++++++++.|+.+.     .+..|.++++.+.+.+||+.
T Consensus       467 ---------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~gK~~  506 (513)
T PRK07656        467 ---------AELTEEELIAYCREHLAKYK-----VPRSIEFLDELPKNATGKVL  506 (513)
T ss_pred             ---------CCCCHHHHHHHHHhhccccc-----CCCEEEEecCCCCCCcccee
Confidence                     34566889999999998886     45889999999999999873

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=2.1e-45  Score=387.11  Aligned_cols=334  Identities=28%  Similarity=0.401  Sum_probs=270.1

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccC--CCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~  131 (495)
                      ...++++++++|||||||.||||++||+++...........+  ....++.+.++|++|.+++.. .+.++..|+++++.
T Consensus       180 ~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~  259 (546)
T PLN02330        180 EILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVM  259 (546)
T ss_pred             cCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEe
Confidence            456789999999999999999999999998765543221111  223468899999999998765 45568888887774


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|.+.++|+++..+...........                                       
T Consensus       260 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~---------------------------------------  300 (546)
T PLN02330        260 SRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDL---------------------------------------  300 (546)
T ss_pred             cccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcccccccc---------------------------------------
Confidence               67899999999999999999999987765311000000                                       


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcccee
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  286 (495)
                                                       .. ..+|.+++||+++++.+ +.+.+.+ ++++++.||+||++.+..
T Consensus       301 ---------------------------------~~-~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  346 (546)
T PLN02330        301 ---------------------------------SK-LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITL  346 (546)
T ss_pred             ---------------------------------ch-heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEeccccccccccee
Confidence                                             00 01378899999999987 4555567 899999999999876543


Q ss_pred             ccC-CC----CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceee
Q 011011          287 ARR-PT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  361 (495)
Q Consensus       287 ~~~-~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~  361 (495)
                      ... +.    ....+++|.|+++++++++|+++++++|.|+.|||+++|+.++.||+++++.+++.++.+|||+|||+|+
T Consensus       347 ~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~  426 (546)
T PLN02330        347 THGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGY  426 (546)
T ss_pred             cCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEE
Confidence            221 11    1234689999999999999988899999999999999999999999999999999998899999999999


Q ss_pred             eccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHH
Q 011011          362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLM  437 (495)
Q Consensus       362 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~  437 (495)
                      +++          +|++++.||.+|+|++ +|++|+|.+||+++.++|.|.+++|++.++    ..+.++|++.++    
T Consensus       427 ~~~----------dG~l~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~----  491 (546)
T PLN02330        427 IDD----------DGDIFIVDRIKELIKY-KGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPK----  491 (546)
T ss_pred             EeC----------CCcEEEEechHHhhhc-CCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCC----
Confidence            998          8999999999999997 899999999999999999999999999865    346677777543    


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          438 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                  ...+.+++++++++.|+.++     .++.|.++++.+.+.+||+
T Consensus       492 ------------~~~~~~~l~~~~~~~l~~~~-----~p~~~~~v~~iP~t~~GK~  530 (546)
T PLN02330        492 ------------AKESEEDILNFVAANVAHYK-----KVRVVQFVDSIPKSLSGKI  530 (546)
T ss_pred             ------------CCCCHHHHHHHHHHhccccc-----CceEEEEeccCCCCCCcce
Confidence                        23456789999999888886     5588999999999999997

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-45  Score=387.73  Aligned_cols=329  Identities=23%  Similarity=0.342  Sum_probs=272.2

Q ss_pred             CCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHh-HhHhhcCceEEec-----
Q 011011           58 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT-----  131 (495)
Q Consensus        58 ~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~~-----  131 (495)
                      ++|+++++|||||||.||||+++|+++...+......+++.++|++++++|++|.+++... +.++..|.++++.     
T Consensus       175 ~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~  254 (534)
T PRK05852        175 RPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRF  254 (534)
T ss_pred             CCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCc
Confidence            5788999999999999999999999998888877777888999999999999999998764 4457888887763     


Q ss_pred             chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHH
Q 011011          132 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  211 (495)
Q Consensus       132 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  211 (495)
                      ++..+++.++++++|.+.++|+++..+.+......                                             
T Consensus       255 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------------  289 (534)
T PRK05852        255 SAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP---------------------------------------------  289 (534)
T ss_pred             CHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc---------------------------------------------
Confidence            47789999999999999999999988765421100                                             


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          212 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                  .......+|.+.++|+++++.+ +.+.+.++.++++.||+||++..++....
T Consensus       290 ----------------------------~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~  341 (534)
T PRK05852        290 ----------------------------SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQI  341 (534)
T ss_pred             ----------------------------ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCc
Confidence                                        0011234589999999999987 44556789999999999999876553322


Q ss_pred             C-----CCCccccccC--cCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeec
Q 011011          291 T-----CNVLGSVGHP--INHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  363 (495)
Q Consensus       291 ~-----~~~~~~~G~p--~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~  363 (495)
                      .     .....++|.+  .++++++++|++ ++++++|+.|||+++|+.+++||+++++.|++.|. +|||+|||+++++
T Consensus       342 ~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~-g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~-~g~~~TGD~~~~d  419 (534)
T PRK05852        342 EGIGQTENPVVSTGLVGRSTGAQIRIVGSD-GLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFT-DGWLRTGDLGSLS  419 (534)
T ss_pred             cccccccCcccccccCCCCCCCeEEEECCC-CCCCCCCCceEEEEecCcccchhcCCcccchhhhc-CCCcccCceEEEe
Confidence            1     1111233444  699999999965 78899999999999999999999999999999884 7899999999999


Q ss_pred             cCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHH
Q 011011          364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAA  439 (495)
Q Consensus       364 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~  439 (495)
                      +          ||++++.||.+|+|+. +|.+|+|.+||+++.+||.|.+|+|+|.+++    .+.++|++++.      
T Consensus       420 ~----------dG~l~~~gR~~d~i~~-~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~------  482 (534)
T PRK05852        420 A----------AGDLSIRGRIKELINR-GGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRES------  482 (534)
T ss_pred             C----------CCcEEEEecchhhEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCC------
Confidence            8          8999999999999997 8999999999999999999999999998763    46678776542      


Q ss_pred             HHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          440 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       440 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                ...+.+++.++++++|+.++     +++.|.++++.+.+.+||+
T Consensus       483 ----------~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKi  521 (534)
T PRK05852        483 ----------APPTAEELVQFCRERLAAFE-----IPASFQEASGLPHTAKGSL  521 (534)
T ss_pred             ----------CCCCHHHHHHHHHHhccccc-----CCeEEEEhhhcCCCCCccc
Confidence                      33467889999999998886     5588999999999999986

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-45  Score=388.01  Aligned_cols=336  Identities=23%  Similarity=0.278  Sum_probs=263.0

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh----cccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEe
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY----DIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY  130 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~----~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~  130 (495)
                      ...++++++++|||||||.||||++||+++.++.....    ..+....+++.++.+|++|.+++...+.++..|++++.
T Consensus       165 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~  244 (540)
T PRK05857        165 DQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVT  244 (540)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHhhcceeEEe
Confidence            45778999999999999999999999999876544322    22345567899999999999998877778888888877


Q ss_pred             c--chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          131 T--AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       131 ~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                      .  ++..+++.++++++|.+.++|+++..+........                                          
T Consensus       245 ~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~------------------------------------------  282 (540)
T PRK05857        245 GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN------------------------------------------  282 (540)
T ss_pred             cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC------------------------------------------
Confidence            3  57889999999999999999999988765321100                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceecc
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                       ..+..+|.+++||++++....++.+.+++++++.||+||++......
T Consensus       283 ---------------------------------~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~  329 (540)
T PRK05857        283 ---------------------------------ATVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVYGLSETGCTALCL  329 (540)
T ss_pred             ---------------------------------CcCccceEEEEcCccCCchhHHHHHHhCCeeecccCCCcCCceeeec
Confidence                                             11223488999999988776667777899999999999987543322


Q ss_pred             CCC-----CCCccccccCcCCcEEEEEeCCCCCcC-----CCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCc
Q 011011          289 RPT-----CNVLGSVGHPINHTEIKIVDAETNEVL-----PAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  358 (495)
Q Consensus       289 ~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~~-----~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGD  358 (495)
                      ...     ....+++|+|+++++++|+|+++..++     +.|+.|||+++||.++.||+++++.|++.| .+|||+|||
T Consensus       330 ~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGD  408 (540)
T PRK05857        330 PTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGD  408 (540)
T ss_pred             ccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccc
Confidence            211     124578999999999999997654443     457899999999999999999999999988 489999999


Q ss_pred             eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHH
Q 011011          359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  434 (495)
Q Consensus       359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~  434 (495)
                      +|++++          +|++++.||.||+|++ +|.+|+|.+||++|..||.|.+|+|++.++.    .+.++++..++ 
T Consensus       409 lg~~d~----------~g~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~-  476 (540)
T PRK05857        409 LLERRE----------DGFFYIKGRSSEMIIC-GGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAE-  476 (540)
T ss_pred             eEEEcC----------CceEEEeccccccEec-CCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCC-
Confidence            999998          8999999999999997 8999999999999999999999999998753    34456665432 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          435 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                    .......++++.+.+.+++...+. .++++|.++++.+.+.+||+
T Consensus       477 --------------~~~~~~~~l~~~~~~~~~~~l~~~-~~P~~v~~~~~iP~t~~GKi  520 (540)
T PRK05857        477 --------------LDESAARALKHTIAARFRRESEPM-ARPSTIVIVTDIPRTQSGKV  520 (540)
T ss_pred             --------------CChhhHHHHHHHHHHHHHhhhccc-cCCeEEEEhhcCCCCCCcce
Confidence                          011112345555544443322211 36689999999999999997

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.4e-45  Score=379.61  Aligned_cols=332  Identities=25%  Similarity=0.362  Sum_probs=270.5

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhH-hHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~-~~~~~G~~~~~~--  131 (495)
                      ...++++++++|||||||.||+|++||+++...+..+.......++|++++.+|++|++++...+ .++..|+++++.  
T Consensus       131 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~  210 (488)
T PRK09088        131 SIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNG  210 (488)
T ss_pred             CCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCC
Confidence            34578999999999999999999999999987777666666778899999999999999987754 457888888774  


Q ss_pred             -chHhHHHHHh--HhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 -AVRNLKDDLQ--RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 -~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                       .+..++..+.  ++++|.+..+|.++..+.......                                           
T Consensus       211 ~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------  247 (488)
T PRK09088        211 FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFD-------------------------------------------  247 (488)
T ss_pred             CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcC-------------------------------------------
Confidence             4677777775  488999999999887664321000                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceecc
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                      ...+..++.+++||++++......+...|+++++.||+||++......
T Consensus       248 --------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  295 (488)
T PRK09088        248 --------------------------------AAALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMS  295 (488)
T ss_pred             --------------------------------ccccccceEEEecCCCCCHHHHHHHHHhCCceeeeecccccccccccC
Confidence                                            011233488999999998776433334589999999999998654322


Q ss_pred             CC---CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          289 RP---TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       289 ~~---~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      ..   .....+++|.|.++++++|+|+ ++++++.|+.|||+++||+++.||+++++.+++.|..+|||+|||+|++++ 
T Consensus       296 ~~~~~~~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~-  373 (488)
T PRK09088        296 VDCDVIRAKAGAAGIPTPTVQTRVVDD-QGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDA-  373 (488)
T ss_pred             CCcccccccCCccccCCCCcEEEEECC-CCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcC-
Confidence            11   1235678999999999999994 588899999999999999999999999999999998899999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~  441 (495)
                               +|.+++.||.||+|+. +|.+|+|.+||++|.++|.|.+++|++.+++    ...++|+++++        
T Consensus       374 ---------~g~l~i~GR~~d~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~--------  435 (488)
T PRK09088        374 ---------DGFFWVVDRKKDMFIS-GGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADG--------  435 (488)
T ss_pred             ---------CCcEEEeccccceEEe-CCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCC--------
Confidence                     8999999999999997 8999999999999999999999999998753    35577776543        


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          442 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                              ...+.+++.++++++++.++     .+++|.++++.+.+.+||+.
T Consensus       436 --------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gKi~  475 (488)
T PRK09088        436 --------APLDLERIRSHLSTRLAKYK-----VPKHLRLVDALPRTASGKLQ  475 (488)
T ss_pred             --------CCCCHHHHHHHHHhhCcCCC-----CCCEEEEcccCCCCCCCcee
Confidence                    23456788999998888775     55889999999999999873

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=2.2e-45  Score=386.22  Aligned_cols=328  Identities=23%  Similarity=0.291  Sum_probs=274.4

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---  131 (495)
                      ...++++++|+|||||||.||+|+++|+++..........+++++++++++.+|++|.+++...+.++..|+++++.   
T Consensus       176 ~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~~~~~  255 (542)
T PRK06155        176 AVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRF  255 (542)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEeeCCC
Confidence            34678999999999999999999999999987777677778899999999999999999988778889999998874   


Q ss_pred             chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHH
Q 011011          132 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  211 (495)
Q Consensus       132 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  211 (495)
                      ++..++..++++++|.+..+|+++..+.+.....                                              
T Consensus       256 ~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~----------------------------------------------  289 (542)
T PRK06155        256 SASGFWPAVRRHGATVTYLLGAMVSILLSQPARE----------------------------------------------  289 (542)
T ss_pred             CHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCcc----------------------------------------------
Confidence            5889999999999999999999887665431110                                              


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          212 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                   ......++.++.||  +++.+ ..+.+.+++++++.||+||++..+.... 
T Consensus       290 -----------------------------~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-  337 (542)
T PRK06155        290 -----------------------------SDRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-  337 (542)
T ss_pred             -----------------------------ccccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-
Confidence                                         00112336665554  44554 6666778999999999999987765433 


Q ss_pred             CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccC---CcchhccCCchhhhhccCCCCccccCceeeeccCCC
Q 011011          291 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS---QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  367 (495)
Q Consensus       291 ~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p---~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~  367 (495)
                      .....+++|.+.++++++|+|+ .++++|.|+.|||+++|+   +++.||+++++.+++.| .++||+|||+|++++   
T Consensus       338 ~~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~---  412 (542)
T PRK06155        338 GSQRPGSMGRLAPGFEARVVDE-HDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDA---  412 (542)
T ss_pred             CCCCCCCcCccCCCceEEEECC-CCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcC---
Confidence            2345678999999999999995 488999999999999998   69999999999999888 589999999999998   


Q ss_pred             CCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHcC
Q 011011          368 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLS  443 (495)
Q Consensus       368 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~~  443 (495)
                             +|++++.||.+|+|+. +|++|+|.+||+++.+||.|.+++|++.++    ..+.+++++..+          
T Consensus       413 -------dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~----------  474 (542)
T PRK06155        413 -------DGWFRFVDRIKDAIRR-RGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDG----------  474 (542)
T ss_pred             -------CceEEEEecCCCEEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCC----------
Confidence                   8999999999999996 899999999999999999999999998865    456677776543          


Q ss_pred             CCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          444 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       444 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                            ...+..+++++++++|+.++     .+..|.++++.+.+.+||+.
T Consensus       475 ------~~~~~~~~~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~GKi~  514 (542)
T PRK06155        475 ------TALEPVALVRHCEPRLAYFA-----VPRYVEFVAALPKTENGKVQ  514 (542)
T ss_pred             ------CCCCHHHHHHHHHhhCcCcc-----CCcEEEEeccCCCCccccee
Confidence                  34567889999999998886     44789999999999999973

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=3e-45  Score=384.93  Aligned_cols=331  Identities=21%  Similarity=0.333  Sum_probs=276.7

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH--hHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~--~~~~~~~G~~~~~~-  131 (495)
                      ...++++++++|||||||.||+|++||+++...+......++++++|++++.+|++|.+++..  .+.++..|+++++. 
T Consensus       178 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~  257 (536)
T PRK10946        178 PSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAP  257 (536)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECC
Confidence            456799999999999999999999999999988887777788999999999999999988754  45668889998874 


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..++..+++++++++.++|.++..++.......                                           
T Consensus       258 ~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------------------------------  294 (536)
T PRK10946        258 DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGG-------------------------------------------  294 (536)
T ss_pred             CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccC-------------------------------------------
Confidence              57788999999999999999999988766421100                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceecc
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                    ....+..++.+++||+++++.+ +.+.+.+|+++++.||+||++......
T Consensus       295 ------------------------------~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~  344 (536)
T PRK10946        295 ------------------------------SRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRL  344 (536)
T ss_pred             ------------------------------ccccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecC
Confidence                                          0012234589999999999987 455566899999999999975433221


Q ss_pred             C-CCCCCccccccCc-CCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCC
Q 011011          289 R-PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  366 (495)
Q Consensus       289 ~-~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~  366 (495)
                      . ......+++|.|+ +++.++|+| ++++++++|+.|||+++|+.++.||+++++.|++.|+.++||+|||+|++++  
T Consensus       345 ~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~--  421 (536)
T PRK10946        345 DDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDP--  421 (536)
T ss_pred             CCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECC--
Confidence            1 1223457899998 789999999 4588999999999999999999999999999999998899999999999998  


Q ss_pred             CCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHc
Q 011011          367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  442 (495)
Q Consensus       367 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~  442 (495)
                              +|++++.||.+|+++. +|++|+|.+||++|.+||.|.+++|++.++.    .+.+++++++          
T Consensus       422 --------~G~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~----------  482 (536)
T PRK10946        422 --------DGYITVVGREKDQINR-GGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKE----------  482 (536)
T ss_pred             --------CCcEEEeccccceeec-CCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCC----------
Confidence                    8999999999999996 9999999999999999999999999998764    4567777653          


Q ss_pred             CCCcCCccccChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          443 SIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       443 ~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                              ..+.+++++++++. ++.|+     .+++|.++++.+.+.+||+
T Consensus       483 --------~~~~~~l~~~~~~~~l~~~~-----~P~~~~~~~~iP~t~~GKv  521 (536)
T PRK10946        483 --------PLKAVQLRRFLREQGIAEFK-----LPDRVECVDSLPLTAVGKV  521 (536)
T ss_pred             --------CCCHHHHHHHHHhCCccccc-----cCcEEEEeccCCCCCCCcc
Confidence                    24567888888875 88776     5589999999999999987

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=6.6e-45  Score=384.65  Aligned_cols=332  Identities=28%  Similarity=0.457  Sum_probs=279.5

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHh-HhHhhcCceEEe---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMY---  130 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~---  130 (495)
                      ...++++++++|||||||.||+|.+||+++...+......+++.++|+++..+|++|.+++... +.++..|+++++   
T Consensus       195 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~  274 (559)
T PRK08315        195 TLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGE  274 (559)
T ss_pred             cCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecC
Confidence            4567899999999999999999999999998888887777889999999999999999998764 556888988874   


Q ss_pred             -cchHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          131 -TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       131 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                       .++..+++.++++++|.+.++|+++..++.......                                           
T Consensus       275 ~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~-------------------------------------------  311 (559)
T PRK08315        275 GFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFAR-------------------------------------------  311 (559)
T ss_pred             CCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCC-------------------------------------------
Confidence             368889999999999999999999876654211000                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCC-eeeeccCcccCccceec
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAA  287 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~~~  287 (495)
                                                      ..+..+|.++.||++++..+ +.+.+.++. ++++.||+||++.+++.
T Consensus       312 --------------------------------~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~  359 (559)
T PRK08315        312 --------------------------------FDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQ  359 (559)
T ss_pred             --------------------------------CCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceee
Confidence                                            01123488899999999886 556667765 49999999999876654


Q ss_pred             cCCCC---CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeecc
Q 011011          288 RRPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  364 (495)
Q Consensus       288 ~~~~~---~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~  364 (495)
                      .....   ....++|.|++++.++|+|++++++++.|+.|||+|+|++++.||+++++.+++.|..++||+|||++++++
T Consensus       360 ~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~  439 (559)
T PRK08315        360 TRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDE  439 (559)
T ss_pred             cCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcC
Confidence            33221   346789999999999999988899999999999999999999999999999999887789999999999998


Q ss_pred             CCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHH
Q 011011          365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  440 (495)
Q Consensus       365 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~  440 (495)
                                +|.+++.||.+|+++. +|++|+|.+||+++.++|.|.+++|++.++.    .+.++|++.++       
T Consensus       440 ----------dg~~~~~GR~d~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-------  501 (559)
T PRK08315        440 ----------EGYVNIVGRIKDMIIR-GGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPG-------  501 (559)
T ss_pred             ----------CceEEEEeeccceEEE-CCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCC-------
Confidence                      8999999999999997 8999999999999999999999999998654    45677776542       


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          441 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       441 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                               ...+.+++++++++.++.++     .++++.++++.+.+.+||+
T Consensus       502 ---------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~lP~t~~GK~  540 (559)
T PRK08315        502 ---------ATLTEEDVRDFCRGKIAHYK-----IPRYIRFVDEFPMTVTGKI  540 (559)
T ss_pred             ---------CCCCHHHHHHHHHhhccccc-----CCcEEEEcccCCCCCCCce
Confidence                     33466789999999998885     5588999999999999986

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=4e-44  Score=398.04  Aligned_cols=408  Identities=16%  Similarity=0.147  Sum_probs=300.9

Q ss_pred             CeEEEEEeCCCCCCC-C-cccCCcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEe---CCCCCCCch
Q 011011            1 MRFIILLWGKKSSVA-P-DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY---TSGTTGNPK   75 (495)
Q Consensus         1 ~~~~i~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~---TSGTTG~PK   75 (495)
                      ||+||++++...+.. . ....++.+++|++++..+.....+           ....++++|++.|+|   ||||||.||
T Consensus       549 Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~-----------~~~~~~~dDlatIiYtSyTSGTTG~PK  617 (1452)
T PTZ00297        549 LETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPVP-----------LKEHVTTDTVFTYVVDNTTSASGDGLA  617 (1452)
T ss_pred             CcEEEEECCCcccccccccccCCcceeeHHHHHhcCcccCcc-----------ccCCCCcccEEEEEecCCCCCCCcCCc
Confidence            578899864211110 0 012246788999999877432110           112457899999996   999999999


Q ss_pred             hhhhchHHHHHHHHHhhccc---CCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecchHhHHHHHhHhCCcEEEeCc
Q 011011           76 GVMLTHKNLLHQIRSLYDIV---PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVP  152 (495)
Q Consensus        76 ~v~~th~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~~~~~~~~i~~~~~t~~~~~P  152 (495)
                      ||++||+|+++++.......   ...++|++++++|++|+++....+.++..|+++.+.+++.+++++++++||+++++|
T Consensus       618 GVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~~~~~l~~G~~I~~~d~~~lledL~~~rPTv~~~VP  697 (1452)
T PTZ00297        618 VVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVATVDAAHLQRAFVKFQPTILVAAP  697 (1452)
T ss_pred             EEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHHHHHHHHcCCEEEeCCHHHHHHHHHHHCCEEEEecH
Confidence            99999999998877754322   356789999999999999987777789999999888999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHH
Q 011011          153 LVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLA  232 (495)
Q Consensus       153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (495)
                      ++|+++...+.+.....+.+++.++.++........   .  .+       .                      ..+.+.
T Consensus       698 rv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~---~--~g-------~----------------------~~~~l~  743 (1452)
T PTZ00297        698 SLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLI---N--IH-------R----------------------RDSSLL  743 (1452)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---h--cC-------C----------------------CCcHHH
Confidence            999999988877666555666666555544321100   0  00       0                      112356


Q ss_pred             HHHHHHHHHhhcCC-ceEEEeccC--CCChhHHHHHHHcCCeeeeccCcccCccceeccCCCCCCccccccCcCCcEEEE
Q 011011          233 EKLVYKKIQSAIGI-SKAGVSGGG--SLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI  309 (495)
Q Consensus       233 ~~~~~~~~~~~~~~-~~~i~~gg~--~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i  309 (495)
                      ++++++++++.+|+ +|.+++||+  +++.     ....++++..+||+||+.   +.+.+....  ..|.|+|+++++|
T Consensus       744 d~LVf~kir~~lGGrlr~~isGga~~~l~~-----~l~~~i~i~~g~glTE~~---~~~~~~~~~--~~G~PlpgvEvKI  813 (1452)
T PTZ00297        744 RFIFFRATQELLGGCVEKIVLCVSEESTSF-----SLLEHISVCYVPCLREVF---FLPSEGVFC--VDGTPAPSLQVDL  813 (1452)
T ss_pred             HHHHHHHHHHHhcCCeEEEEECCCccccCh-----HHhCCceEEEecceEEee---eecCCCCcc--cCCeecCceEEEE
Confidence            77899999999986 699998874  4443     333467889999999953   333333333  2399999999999


Q ss_pred             EeC-CCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceE
Q 011011          310 VDA-ETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI  388 (495)
Q Consensus       310 ~d~-~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i  388 (495)
                      .|. +.+.   .+..|||+++       |++||++|++.+  +||+         +          ||+|+|+||+||+|
T Consensus       814 ~~~~E~~~---~~~~GEIlvr-------~~kdpe~T~e~~--~gW~---------~----------dG~L~IidRkKdli  862 (1452)
T PTZ00297        814 EPFDEPSD---GAGIGQLVLA-------KKGEPRRTLPIA--AQWK---------R----------DRTLRLLGPPLGIL  862 (1452)
T ss_pred             cccccccC---CCCCCeEEEE-------ECCChHHHHHhh--CcCc---------c----------CCeEEEEeccccce
Confidence            873 3222   1236999995       568999999854  5775         3          69999999999999


Q ss_pred             EeCCceeecchHHHHHHhcCcccceEEEEecCCCeeEEEEecChHHHH-HHHHHcCCCcC--CccccChHHHH----HHH
Q 011011          389 VLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVL-MAAKRLSIVHA--DASELSKEKTI----SLL  461 (495)
Q Consensus       389 ~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~~~a~vv~~~~~~~-~~~~~~~~~~~--~~~~~~~~~l~----~~~  461 (495)
                      |+++|++|+|..||+.+..+|.|.+++|+|.+++.++|+|+|+.+.+. +|++++++...  .....+.+++.    +.+
T Consensus       863 kls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v  942 (1452)
T PTZ00297        863 LPVAYEYVIAAELERIFSQSRYVNDIFLYADPSRPIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYASSLL  942 (1452)
T ss_pred             ECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCCceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhHHHHH
Confidence            999999999999999999999999999999988889999999999998 99999987532  11112222222    223


Q ss_pred             HHH---HHhHhccCC-CccccEEEecCCCCCCCCeec
Q 011011          462 YGE---LRKWTSKCS-FQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       462 ~~~---l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  494 (495)
                      .+.   +.+.+.... +.++.|.+++++|+++||+||
T Consensus       943 ~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLT  979 (1452)
T PTZ00297        943 TADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLT  979 (1452)
T ss_pred             HHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCC
Confidence            333   444443222 556679999999999999997

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=5.1e-45  Score=383.58  Aligned_cols=329  Identities=22%  Similarity=0.373  Sum_probs=274.6

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~--  131 (495)
                      ...++++++++|||||||.||+|+++|+++...+......+++..+|++++.+|++|.+++.. .+.++..|.++++.  
T Consensus       191 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~  270 (538)
T TIGR03208       191 RPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDI  270 (538)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCc
Confidence            357899999999999999999999999999888877777778889999999999999998765 45568889888774  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.+++++++++.++|+++..+........                                            
T Consensus       271 ~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~--------------------------------------------  306 (538)
T TIGR03208       271 WNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG--------------------------------------------  306 (538)
T ss_pred             cCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC--------------------------------------------
Confidence             68899999999999999999999887754321100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  289 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  289 (495)
                                                     ..+..+|.+++||+++++.+ ..+.+.+++++++.||+||++.+.....
T Consensus       307 -------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  355 (538)
T TIGR03208       307 -------------------------------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEP  355 (538)
T ss_pred             -------------------------------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCc
Confidence                                           11233488999999999987 4555678999999999999987665443


Q ss_pred             CCC--CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCC
Q 011011          290 PTC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  367 (495)
Q Consensus       290 ~~~--~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~  367 (495)
                      ...  ....++|+|+++++++|+|+ .+++++.|+.|||+++|+.++.||+++++.++  ++.++||+|||+|++++   
T Consensus       356 ~~~~~~~~~~~G~~~~g~~v~i~~~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~---  429 (538)
T TIGR03208       356 DDALEKASTTDGRPLPGVEVKVIDA-NGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDA---  429 (538)
T ss_pred             ccchhhccCcccccCCCCEEEEECC-CCCCCcCCCCcEEEEecCcccccccCCccccc--ccCCCceeccceEEECC---
Confidence            221  22457899999999999995 57889999999999999999999999998875  34689999999999998   


Q ss_pred             CCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcC
Q 011011          368 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLS  443 (495)
Q Consensus       368 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~  443 (495)
                             +|+++++||.||+|+. +|++|+|.+||++|.+||.|.+++|++.++.    .+.++|++..+          
T Consensus       430 -------~g~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~----------  491 (538)
T TIGR03208       430 -------EGYIRINGRSKDVIIR-GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPG----------  491 (538)
T ss_pred             -------CCcEEEEeccCceEEE-CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCC----------
Confidence                   8999999999999996 8999999999999999999999999998653    46788887643          


Q ss_pred             CCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          444 IVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       444 ~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                            ...+.+++.+++++ +++.++     .+++|..+++.+.+.+||+
T Consensus       492 ------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~gKv  531 (538)
T TIGR03208       492 ------CTLDFAAMVAFLKAQKVALQY-----IPERLEVVDALPATPAGKI  531 (538)
T ss_pred             ------CCCCHHHHHHHHHhcchhhcc-----CCcEEEEeccCCCCCcccc
Confidence                  33456788888885 688776     4478999999999999986

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=2.8e-45  Score=382.61  Aligned_cols=330  Identities=28%  Similarity=0.428  Sum_probs=278.0

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~--  131 (495)
                      ...++++++++|||||||.||+|++||+++...+......+++.++|++++.+|++|..++.. .+.++..|+++++.  
T Consensus       152 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  231 (504)
T PRK07514        152 PRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPK  231 (504)
T ss_pred             cCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCC
Confidence            456899999999999999999999999999988877777788899999999999999999876 44568899998875  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.+  .++|.+.++|+++..++......                                             
T Consensus       232 ~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  264 (504)
T PRK07514        232 FDPDAVLALM--PRATVMMGVPTFYTRLLQEPRLT---------------------------------------------  264 (504)
T ss_pred             CCHHHHHHHH--HhheeeecHHHHHHHHHcCCCCC---------------------------------------------
Confidence             577888888  37999999999998775431000                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  289 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  289 (495)
                                                    ...+..+|.+++||+++++.+ +.+.+.++.++++.||+||++.......
T Consensus       265 ------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  314 (504)
T PRK07514        265 ------------------------------REAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPY  314 (504)
T ss_pred             ------------------------------cccccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCc
Confidence                                          011223489999999999887 5555668899999999999876554332


Q ss_pred             CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCC
Q 011011          290 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  369 (495)
Q Consensus       290 ~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~  369 (495)
                      ......+++|.|+++++++++|++++++++.|+.|||+++|+.++.||+++++.+++.|..++||+|||++++++     
T Consensus       315 ~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~-----  389 (504)
T PRK07514        315 DGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDE-----  389 (504)
T ss_pred             cccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcC-----
Confidence            233345789999999999999988899999999999999999999999999999999998889999999999998     


Q ss_pred             CccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCCC
Q 011011          370 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  445 (495)
Q Consensus       370 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  445 (495)
                           +|++++.||.||+|+. +|++|+|.+||+++.+++.|.+++|++.++.    .+.+++++.++            
T Consensus       390 -----~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~------------  451 (504)
T PRK07514        390 -----RGYVHIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPG------------  451 (504)
T ss_pred             -----CccEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCC------------
Confidence                 8999999999999997 8999999999999999999999999998653    46678877543            


Q ss_pred             cCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          446 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       446 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                          ...+.+++.+.++++|+.++     .+++|.++++.+.+.+||+
T Consensus       452 ----~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~p~t~~gK~  490 (504)
T PRK07514        452 ----AALDEAAILAALKGRLARFK-----QPKRVFFVDELPRNTMGKV  490 (504)
T ss_pred             ----CCCCHHHHHHHHHhhcccCC-----CCcEEEEeccCCCCCCcce
Confidence                33466889999999988875     5588999999999999986

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3e-45  Score=393.56  Aligned_cols=335  Identities=17%  Similarity=0.095  Sum_probs=262.6

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHH-HHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec-
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-  131 (495)
                      ...+++|+++|+|||||||.||||++||++++. ....+...+++.++|+++++.++.|++.. ..+.++..|+++++. 
T Consensus       258 ~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~  336 (655)
T PRK03584        258 EPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLVLYD  336 (655)
T ss_pred             eecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH-HHHHHHHcCCEEEEeC
Confidence            345789999999999999999999999998754 35555666788999999999999887653 345678899998873 


Q ss_pred             ------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011          132 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  205 (495)
Q Consensus       132 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (495)
                            ++..+++.++++++|.+..+|+++..+......     +                                   
T Consensus       337 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----~-----------------------------------  376 (655)
T PRK03584        337 GSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLV-----P-----------------------------------  376 (655)
T ss_pred             CCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCC-----c-----------------------------------
Confidence                  478899999999999999999998776432000     0                                   


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHH-HHHHc--CCeeeeccCcccCc
Q 011011          206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAI--GVKVQVGYGLTESS  282 (495)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~-~~~~~--g~~v~~~YG~TE~~  282 (495)
                                                       .....++.+|.+++||+++++++.+ +.+.+  ++.+.+.||+||++
T Consensus       377 ---------------------------------~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~  423 (655)
T PRK03584        377 ---------------------------------GETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDIC  423 (655)
T ss_pred             ---------------------------------cccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhh
Confidence                                             0001233459999999999998744 44566  47899999999976


Q ss_pred             cceecc-CCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccC--CcchhccCCchhhh--hccC--CCCccc
Q 011011          283 PVIAAR-RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATK--QALD--EDGWLN  355 (495)
Q Consensus       283 ~~~~~~-~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p--~~~~gY~~~~~~t~--~~~~--~~~~~~  355 (495)
                      ...... .......+++|.|.++++++|+|++ ++++ .|+.|||+|++|  +++.|||++++.++  +.+.  .++||+
T Consensus       424 ~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~-g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~  501 (655)
T PRK03584        424 SCFVGGNPLLPVYRGEIQCRGLGMAVEAWDED-GRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWR  501 (655)
T ss_pred             cccccCCCCCCcCCCccCCCcCCceeEEECCC-CCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEee
Confidence            543322 2223456889999999999999954 7777 799999999996  79999999998553  2221  257899


Q ss_pred             cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecC
Q 011011          356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPD  431 (495)
Q Consensus       356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~  431 (495)
                      |||+|++++          ||+++|+||+||+|++ +|++|+|.|||++|.+||.|.+|+|+|.++    +.+.++|+++
T Consensus       502 TGDl~~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~  570 (655)
T PRK03584        502 HGDWIEITE----------HGGVVIYGRSDATLNR-GGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLA  570 (655)
T ss_pred             cCCeEEECC----------CCeEEEEeeccCeeec-CcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEEC
Confidence            999999998          8999999999999997 899999999999999999999999999876    4677888886


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          432 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ++.             ...+...++++++++++|+.++     .+++|.++++.+.+.|||+
T Consensus       571 ~~~-------------~~~~~~~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~t~sGKi  614 (655)
T PRK03584        571 EGV-------------TLDDALRARIRTTIRTNLSPRH-----VPDKIIAVPDIPRTLSGKK  614 (655)
T ss_pred             CCC-------------CCcHHHHHHHHHHHHhhCCCCc-----CCCEEEECCCCCCCCCccc
Confidence            430             0011113567777777777775     5589999999999999996

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.6e-45  Score=426.56  Aligned_cols=345  Identities=19%  Similarity=0.194  Sum_probs=274.6

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---  131 (495)
                      ...++|+++|+|||||||.||||++||+++.+.+.++...+++.++|+++.+.|++|..++...+.++..|+++++.   
T Consensus       411 ~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~  490 (1389)
T TIGR03443       411 VVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGLSENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTAD  490 (1389)
T ss_pred             cCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChh
Confidence            35689999999999999999999999999999888888888899999999999999998887788889999999875   


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++..+|+++..+.....                                             
T Consensus       491 ~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~---------------------------------------------  525 (1389)
T TIGR03443       491 DIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT---------------------------------------------  525 (1389)
T ss_pred             hccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc---------------------------------------------
Confidence               35688999999999999999999876643100                                             


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHc-CCeeeeccCcccCcccee
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~~~~  286 (495)
                                                       ..+..+|.+++||++++.... .+.+.. +.+++|.||+||++..++
T Consensus       526 ---------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  572 (1389)
T TIGR03443       526 ---------------------------------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVS  572 (1389)
T ss_pred             ---------------------------------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEE
Confidence                                             112334889999999988764 444433 789999999999986655


Q ss_pred             ccCCCC-----------CCccccccCcCCcEEEEEeCCC-CCcCCCCCccEEEEccCCcchhccCCchhhhhccC-----
Q 011011          287 ARRPTC-----------NVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD-----  349 (495)
Q Consensus       287 ~~~~~~-----------~~~~~~G~p~~~~~v~i~d~~~-~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~-----  349 (495)
                      ......           ....++|.|+++++++|+|++. ++++|.|+.|||+|+||++++||+|+|+.|+++|.     
T Consensus       573 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~  652 (1389)
T TIGR03443       573 YFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFV  652 (1389)
T ss_pred             EEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCccc
Confidence            422110           1235789999999999999753 57899999999999999999999999999999883     


Q ss_pred             -----------------------CCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHh
Q 011011          350 -----------------------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL  406 (495)
Q Consensus       350 -----------------------~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~  406 (495)
                                             .++||+|||+|++++          ||.++|+||+||+||+ +|++|+|.|||++|.
T Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~----------dG~l~~~GR~dd~Iki-~G~rI~p~eIE~~l~  721 (1389)
T TIGR03443       653 DPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLP----------DGNVECCGRADDQVKI-RGFRIELGEIDTHLS  721 (1389)
T ss_pred             CcccccccccccccccccccCCCccceeecCCceeEcC----------CCCEEEecccCCEEEe-CcEEecHHHHHHHHH
Confidence                                   257999999999999          8999999999999997 999999999999999


Q ss_pred             cCcccceEEEEecCC----CeeEEEEecChH--HHHHHHHHcCCCcCC--------ccccChHHHHHHHHHHHHhHhccC
Q 011011          407 RSSLIRQIVVIGQDQ----RRPGAIIVPDKE--EVLMAAKRLSIVHAD--------ASELSKEKTISLLYGELRKWTSKC  472 (495)
Q Consensus       407 ~~p~V~~~~vvg~~~----~~~~a~vv~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~l~~~~~~~  472 (495)
                      +||.|.+++|++.++    +.+.|++++..+  ...++..........        .......+++++++++|+.|+.  
T Consensus       722 ~~p~V~~a~v~~~~~~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~--  799 (1389)
T TIGR03443       722 QHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAI--  799 (1389)
T ss_pred             hCcchheeEEEEeeCCCCCeEEEEEEeccCccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccC--
Confidence            999999999987543    468899987621  110000000000000        0011246788888888888874  


Q ss_pred             CCccccEEEecCCCCCCCCee
Q 011011          473 SFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~l  493 (495)
                         +..|..+++.+.+.|||+
T Consensus       800 ---P~~~~~~~~lP~t~~GKi  817 (1389)
T TIGR03443       800 ---PTVIVPLKKLPLNPNGKV  817 (1389)
T ss_pred             ---CceEEEcccCCCCCCccc
Confidence               478999999999999987

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-45  Score=378.96  Aligned_cols=320  Identities=24%  Similarity=0.298  Sum_probs=270.1

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---ch
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AV  133 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---~~  133 (495)
                      ..+++++|+|||||||.||+|+++|+++...+......+++.++|+++...|++|..++...+.++..|+++++.   ++
T Consensus       141 ~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~  220 (487)
T PRK07638        141 VQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIP  220 (487)
T ss_pred             CCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCH
Confidence            357789999999999999999999999988887777778889999999999999998877677788999999885   68


Q ss_pred             HhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHH
Q 011011          134 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  213 (495)
Q Consensus       134 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  213 (495)
                      ..+++.++++++|++.++|+++..+.... .                                                 
T Consensus       221 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~-------------------------------------------------  250 (487)
T PRK07638        221 NQVLDKLETENISVMYTVPTMLESLYKEN-R-------------------------------------------------  250 (487)
T ss_pred             HHHHHHHHHcCCeEEEeCcHHHHHHHhCc-C-------------------------------------------------
Confidence            89999999999999999999998776530 0                                                 


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccceeccCCC
Q 011011          214 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRPT  291 (495)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~  291 (495)
                                                   .....+.++++|++++... ..+.+.+ +..+++.||+||++..+......
T Consensus       251 -----------------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  301 (487)
T PRK07638        251 -----------------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEE  301 (487)
T ss_pred             -----------------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccc
Confidence                                         0001145677888888876 5555566 68899999999998766554322


Q ss_pred             -CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCC
Q 011011          292 -CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  370 (495)
Q Consensus       292 -~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~  370 (495)
                       ....+++|.|++++.++|+|+ .++++++|+.|||+++|+.++.||+++++.+.+.+ .+|||+|||++++++      
T Consensus       302 ~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~------  373 (487)
T PRK07638        302 SERRPNSVGRPFHNVQVRICNE-AGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDE------  373 (487)
T ss_pred             cCCCCCCCCcccCCcEEEEECC-CCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcC------
Confidence             235678999999999999995 58899999999999999999999999998887655 589999999999998      


Q ss_pred             ccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCCCc
Q 011011          371 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  446 (495)
Q Consensus       371 ~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  446 (495)
                          +|++++.||++|+|++ +|.+|+|.+||+++.+||.|.+|+|++.+++    .+.++++.                
T Consensus       374 ----~g~l~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----------------  432 (487)
T PRK07638        374 ----EGFIYIVGREKNMILF-GGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----------------  432 (487)
T ss_pred             ----CCeEEEEecCCCeEEe-CCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----------------
Confidence                8999999999999998 8999999999999999999999999998764    34555543                


Q ss_pred             CCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          447 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       447 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                          ....+++++++++.|+.+.     .++++.++++.+...+||+
T Consensus       433 ----~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~GKv  470 (487)
T PRK07638        433 ----SATKQQLKSFCLQRLSSFK-----IPKEWHFVDEIPYTNSGKI  470 (487)
T ss_pred             ----CCCHHHHHHHHHHHhhccc-----CCcEEEEecccCCCCcccc
Confidence                1356789999999998885     5588999999999999987

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=3.5e-45  Score=391.80  Aligned_cols=334  Identities=18%  Similarity=0.150  Sum_probs=256.6

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHH-HHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      ..+++|+++|+|||||||.||||++||++++. ........+++.++|+++++.|+.|++. ...+.++..|+++++.  
T Consensus       260 ~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g  338 (652)
T TIGR01217       260 QLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NWLVSGLATGATLVLYDG  338 (652)
T ss_pred             ecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HHHHHHHhcCcEEEEECC
Confidence            45679999999999999999999999998653 4444555678899999999999999864 3345678999998874  


Q ss_pred             -----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCc
Q 011011          132 -----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  206 (495)
Q Consensus       132 -----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  206 (495)
                           ++..+++.++++++|++...|.++..+... ...    +                                    
T Consensus       339 ~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~-~~~----~------------------------------------  377 (652)
T TIGR01217       339 SPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA-GVH----P------------------------------------  377 (652)
T ss_pred             CCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc-CCC----c------------------------------------
Confidence                 467899999999999987766655443221 000    0                                    


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHH-HHHcC--CeeeeccCcccCcc
Q 011011          207 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIG--VKVQVGYGLTESSP  283 (495)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~-~~~~g--~~v~~~YG~TE~~~  283 (495)
                                                      .-...++++|.+++||++++++..++ .+.++  ..+.+.||+||++.
T Consensus       378 --------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~  425 (652)
T TIGR01217       378 --------------------------------ARTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICS  425 (652)
T ss_pred             --------------------------------cccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhc
Confidence                                            00012344599999999999997544 45564  45778999999753


Q ss_pred             ceec-cCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccC--CcchhccCCchhhh--hc-cC-CCCcccc
Q 011011          284 VIAA-RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS--QVMQGYFKNPSATK--QA-LD-EDGWLNT  356 (495)
Q Consensus       284 ~~~~-~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p--~~~~gY~~~~~~t~--~~-~~-~~~~~~T  356 (495)
                      .... .+......+++|.|.++++++|+|++ |+++ +|+.|||+++||  +++.|||+|++.++  +. |. .+|||+|
T Consensus       426 ~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~-g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~t  503 (652)
T TIGR01217       426 CFAGANPTLPVHIGEIQAPGLGTAVQSWDPE-GKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRH  503 (652)
T ss_pred             cccCCCCCCCCcCCccCCCcCCCceEEECCC-CCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEc
Confidence            3322 22223345789999999999999954 6676 599999999996  68999999998654  22 22 2689999


Q ss_pred             CceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecCh
Q 011011          357 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDK  432 (495)
Q Consensus       357 GDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~  432 (495)
                      ||+|++++          ||+++|+||.||+|+. +|++|+|.|||++|.+||.|.+|+|+|.++    +.+.++|++++
T Consensus       504 GDlg~~d~----------dG~l~i~GR~dd~I~~-~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~  572 (652)
T TIGR01217       504 GDWITLTP----------RGGIVIHGRSDSTLNP-QGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAP  572 (652)
T ss_pred             CCcEEECC----------CCcEEEEecccCeEec-CCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECC
Confidence            99999999          8999999999999997 999999999999999999999999999875    35778888865


Q ss_pred             HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          433 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      +.             ...+...++++++++++|..++     .+++|.++++.+.+.+||+
T Consensus       573 ~~-------------~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~T~sGKi  615 (652)
T TIGR01217       573 GA-------------TLDDALLDRIKRTIRAGLSPRH-----VPDEIIEVPGIPHTLTGKR  615 (652)
T ss_pred             CC-------------CCCHHHHHHHHHHHHhhCCCCc-----CCCEEEECCCCCCCCCccC
Confidence            30             0011113577788888787776     4588999999999999996

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=6.6e-45  Score=377.79  Aligned_cols=326  Identities=27%  Similarity=0.389  Sum_probs=276.3

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---  131 (495)
                      ..+++++++++|||||||.||+|++||+++...+......+++.++|++++.+|++|++++...+.++..|+++++.   
T Consensus       137 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~  216 (483)
T PRK03640        137 EFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKF  216 (483)
T ss_pred             CCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCC
Confidence            45689999999999999999999999999887776666667889999999999999999988777788899998874   


Q ss_pred             chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHH
Q 011011          132 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  211 (495)
Q Consensus       132 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  211 (495)
                      ++..+++.++++++|.+.++|+++..+.+.....                                              
T Consensus       217 ~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~----------------------------------------------  250 (483)
T PRK03640        217 DAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG----------------------------------------------  250 (483)
T ss_pred             CHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc----------------------------------------------
Confidence            6889999999999999999999998876532110                                              


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCCC
Q 011011          212 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT  291 (495)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~  291 (495)
                                                    .....+|.+++||++++.......+.+++++++.||+||++..+......
T Consensus       251 ------------------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  300 (483)
T PRK03640        251 ------------------------------TYPSSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTETASQIVTLSPE  300 (483)
T ss_pred             ------------------------------ccCCcceEEEEcCCCCCHHHHHHHHHhCCCeeeeeccCcccccccccCcc
Confidence                                          01123489999999999988666666799999999999987543322222


Q ss_pred             --CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCC
Q 011011          292 --CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  369 (495)
Q Consensus       292 --~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~  369 (495)
                        ....+++|+|++++++++.|+  +++++.|+.|||+++||+++.||+++++.++..| .++||+|||++++++     
T Consensus       301 ~~~~~~~~vG~p~~~~~~~i~~~--~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~-----  372 (483)
T PRK03640        301 DALTKLGSAGKPLFPCELKIEKD--GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDE-----  372 (483)
T ss_pred             cccccCCCcccccCCcEEEEecC--CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcC-----
Confidence              245688999999999999984  4789999999999999999999999999999888 589999999999998     


Q ss_pred             CccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCCC
Q 011011          370 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  445 (495)
Q Consensus       370 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  445 (495)
                           +|++++.||+||+++. +|.+|+|.+||+++.++|.|.++++++.++.    .+.+++++.              
T Consensus       373 -----~g~l~~~GR~~~~i~~-~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--------------  432 (483)
T PRK03640        373 -----EGFLYVLDRRSDLIIS-GGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--------------  432 (483)
T ss_pred             -----CCCEEEeecccCeEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--------------
Confidence                 8999999999999997 8999999999999999999999999998653    355666653              


Q ss_pred             cCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          446 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       446 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                          ...+.+++++++++.|+.++     .+++|.++++.+.+.+||+
T Consensus       433 ----~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gK~  471 (483)
T PRK03640        433 ----GEVTEEELRHFCEEKLAKYK-----VPKRFYFVEELPRNASGKL  471 (483)
T ss_pred             ----CCCCHHHHHHHHHHhccCCC-----CCcEEEEeCCCCCCCccce
Confidence                23466889999999898885     5589999999999999986

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.7e-45  Score=382.93  Aligned_cols=328  Identities=22%  Similarity=0.306  Sum_probs=272.3

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---c
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A  132 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---~  132 (495)
                      ..++++++++|||||||.||+|++||+++......+...+++.+++++++++|++|.+++...+.++..|+++++.   +
T Consensus       178 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~  257 (540)
T PRK06164        178 ADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGALAGGAPLVCEPVFD  257 (540)
T ss_pred             CCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHHHhcCceEEecCCCC
Confidence            3568999999999999999999999999998888888888899999999999999999998777789999998874   5


Q ss_pred             hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHH
Q 011011          133 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  212 (495)
Q Consensus       133 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  212 (495)
                      +..+++.++++++|.++++|+++..+......                                                
T Consensus       258 ~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~------------------------------------------------  289 (540)
T PRK06164        258 AARTARALRRHRVTHTFGNDEMLRRILDTAGE------------------------------------------------  289 (540)
T ss_pred             HHHHHHHHHHhCCeeecCCHHHHHHHHHhhcc------------------------------------------------
Confidence            78899999999999999999999887664100                                                


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEecc-CCCChhHHHHHHHcCCeeeeccCcccCccceeccCCC
Q 011011          213 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGG-GSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT  291 (495)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg-~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~  291 (495)
                                                  ...+..++.+.++| .+....+..+....++++++.||+||++..++.....
T Consensus       290 ----------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~  341 (540)
T PRK06164        290 ----------------------------RADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALVALQPAT  341 (540)
T ss_pred             ----------------------------cCCCcceeeeeeccCCcchHHHHHHHhhcCCceecceeeccccceeeccCCC
Confidence                                        01122235554444 4445555555555589999999999998766554322


Q ss_pred             C---CCccccccCc-CCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCC
Q 011011          292 C---NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  367 (495)
Q Consensus       292 ~---~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~  367 (495)
                      .   ....+.|.+. +++.++|+|++++++++.|+.|||+++|++++.||+++++.|++.|..++||+|||+|++++   
T Consensus       342 ~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~---  418 (540)
T PRK06164        342 DPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRG---  418 (540)
T ss_pred             CCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcC---
Confidence            1   2234567775 78999999999999999999999999999999999999999999998899999999999998   


Q ss_pred             CCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC---CCeeEEEEecChHHHHHHHHHcCC
Q 011011          368 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDKEEVLMAAKRLSI  444 (495)
Q Consensus       368 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~---~~~~~a~vv~~~~~~~~~~~~~~~  444 (495)
                             +|++++.||.||+|++ +|++|+|.+||+++.+||.|.+++|++.+   ...+.++++++++           
T Consensus       419 -------~g~l~~~GR~~~~i~~-~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~-----------  479 (540)
T PRK06164        419 -------DGQFVYQTRMGDSLRL-GGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDG-----------  479 (540)
T ss_pred             -------CceEEEEeecCCeEEE-CCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCC-----------
Confidence                   8999999999999998 89999999999999999999999999864   3457788887643           


Q ss_pred             CcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCC
Q 011011          445 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFL  491 (495)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (495)
                           ...+.+++.+++++.|+.++     .++.|.++++.+...+|
T Consensus       480 -----~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~g  516 (540)
T PRK06164        480 -----ASPDEAGLMAACREALAGFK-----VPARVQVVEAFPVTESA  516 (540)
T ss_pred             -----CCCCHHHHHHHHHhhcccCc-----CCcEEEEecCCCCCCCC
Confidence                 33567889999999998886     44789999998887776

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.5e-45  Score=397.60  Aligned_cols=322  Identities=23%  Similarity=0.348  Sum_probs=261.5

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~--  131 (495)
                      ...++|+++++|||||||.||||++||+++.+....+...++++++|++++.+|++|.+++.. .+.++..|+++++.  
T Consensus       361 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~  440 (718)
T PRK08043        361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPS  440 (718)
T ss_pred             CCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCC
Confidence            356799999999999999999999999999888777777778899999999999999999876 45668899998874  


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..+++.++++++|.+.++|+++..+.....                                              
T Consensus       441 ~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~----------------------------------------------  474 (718)
T PRK08043        441 PLHYRIVPELVYDRNCTVLFGTSTFLGNYARFAN----------------------------------------------  474 (718)
T ss_pred             cccHHHHHHHHHhcCCeEEEchHHHHHHhhhhcC----------------------------------------------
Confidence              34677889999999999999998765432100                                              


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceecc
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                     ...++.+|.+++||+++++++ +.+.+.+|+++++.||+||++..++..
T Consensus       475 -------------------------------~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~  523 (718)
T PRK08043        475 -------------------------------PYDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSIN  523 (718)
T ss_pred             -------------------------------cccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEec
Confidence                                           011234589999999999987 455567899999999999998776655


Q ss_pred             CCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccC--Cchh-------hhhccCCCCccccCce
Q 011011          289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFK--NPSA-------TKQALDEDGWLNTGDI  359 (495)
Q Consensus       289 ~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~--~~~~-------t~~~~~~~~~~~TGDl  359 (495)
                      .+.....+++|+|+|+++++++|++ +    .++.|||+++|++++.||++  +++.       +.+.+..+|||+|||+
T Consensus       524 ~~~~~~~~svG~p~pg~~~~i~d~~-~----~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDl  598 (718)
T PRK08043        524 VPMAAKPGTVGRILPGMDARLLSVP-G----IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDI  598 (718)
T ss_pred             CCcccCCCCCCCcCCCCeeEEecCC-C----CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCE
Confidence            4444567899999999999999854 2    24569999999999999999  4542       2223445799999999


Q ss_pred             eeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCee----EEEEecChHHH
Q 011011          360 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP----GAIIVPDKEEV  435 (495)
Q Consensus       360 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~~----~a~vv~~~~~~  435 (495)
                      |++++          ||++++.||+||+|+. +|++|+|.|||+++.+|+.+.+++|++.+++..    .++++ .    
T Consensus       599 g~~d~----------dG~l~i~GR~~d~I~~-~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~-~----  662 (718)
T PRK08043        599 VRFDE----------QGFVQIQGRAKRFAKI-AGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT-D----  662 (718)
T ss_pred             EEEcC----------CCcEEEEecCCCeeEe-CcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc-C----
Confidence            99998          8999999999999998 799999999999999999888888888776433    23322 1    


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          436 LMAAKRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                    ...+.++++++++++ |+.|+     .+++|.++++.+.+.+||+
T Consensus       663 --------------~~~~~~~l~~~~~~~~l~~~~-----vP~~i~~v~~lP~t~~GKi  702 (718)
T PRK08043        663 --------------SELTREKLQQYAREHGVPELA-----VPRDIRYLKQLPLLGSGKP  702 (718)
T ss_pred             --------------cccCHHHHHHHHHhcCCCccc-----CCceEEEecccCcCCCCCc
Confidence                          234567888998887 88886     4488999999999999986

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.7e-45  Score=385.11  Aligned_cols=331  Identities=30%  Similarity=0.473  Sum_probs=274.4

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccC-C-CCCcEEEEECChhhHHHHHHh-HhHhhcCceEEec
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-A-ENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~-~-~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~~  131 (495)
                      ...++++++++|||||||.||+|++||+++...+......+. + ..++++++.+|++|.+++.+. ..++..|++++..
T Consensus       215 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~  294 (573)
T PRK05605        215 RPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLL  294 (573)
T ss_pred             CCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEe
Confidence            456899999999999999999999999998876654433322 2 346899999999999998764 4457888888763


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         +++.+++.++++++|++.++|+++..+.+......                                          
T Consensus       295 ~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------  332 (573)
T PRK05605        295 PAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG------------------------------------------  332 (573)
T ss_pred             CCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC------------------------------------------
Confidence               68899999999999999999999988876422110                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                       ..+..+|.+++||+++++.+ ..+.+.++.++++.||+||++.++..
T Consensus       333 ---------------------------------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  379 (573)
T PRK05605        333 ---------------------------------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVG  379 (573)
T ss_pred             ---------------------------------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhc
Confidence                                             01123488999999999887 44555678999999999999876655


Q ss_pred             cCCC-CCCccccccCcCCcEEEEEeCCC-CCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          288 RRPT-CNVLGSVGHPINHTEIKIVDAET-NEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       288 ~~~~-~~~~~~~G~p~~~~~v~i~d~~~-~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      .... ....+++|.|++++.++|+|+++ +.+++.|+.|||+++|+.++.||+++++.+++.|. +|||+|||++++++ 
T Consensus       380 ~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~g~~~TGD~~~~~~-  457 (573)
T PRK05605        380 NPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL-DGWFRTGDVVVMEE-  457 (573)
T ss_pred             CCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhccc-CCCcccCCEEEEcC-
Confidence            4332 23457899999999999999876 68899999999999999999999999999998885 67999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~  441 (495)
                               +|++++.||.||+++. +|++|+|.+||+++.+|+.|.+++|++.++    +.+.++++++.+        
T Consensus       458 ---------~g~l~i~gR~dd~i~~-~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~--------  519 (573)
T PRK05605        458 ---------DGFIRIVDRIKELIIT-GGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPG--------  519 (573)
T ss_pred             ---------CCcEEEEeccccceee-CCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCC--------
Confidence                     8999999999999997 899999999999999999999999998754    457778887643        


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          442 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                              ...+.+++++++++.|+.++     .++.|.++++.+.+.+||+
T Consensus       520 --------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~GKi  558 (573)
T PRK05605        520 --------AALDPEGLRAYCREHLTRYK-----VPRRFYHVDELPRDQLGKV  558 (573)
T ss_pred             --------CCCCHHHHHHHHHHhCcccc-----CCcEEEEeccCCCCCcccc
Confidence                    34566889999999998875     4578999999999999986

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-44  Score=379.20  Aligned_cols=330  Identities=25%  Similarity=0.327  Sum_probs=274.9

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCC-CCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA-ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~-~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      ....+++++++|||||||.||+|++||+++...+......++. ..++++++.+|++|++|+...+.++..|+++++.  
T Consensus       170 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~  249 (542)
T PRK07786        170 DIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTVIYPL  249 (542)
T ss_pred             CCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchHHHHHHHHHHHHHHccCEEEEccC
Confidence            3556889999999999999999999999998877766666666 5678999999999999987777789999998763  


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|.+.++|+++..++.......                                          
T Consensus       250 ~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~------------------------------------------  287 (542)
T PRK07786        250 GAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP------------------------------------------  287 (542)
T ss_pred             CCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc------------------------------------------
Confidence               58899999999999999999999988765321100                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcccee
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  286 (495)
                                                       .. ..+|.+++||+++++++ +.+.+.+ +.++++.||+||++.+..
T Consensus       288 ---------------------------------~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~  333 (542)
T PRK07786        288 ---------------------------------RD-LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTC  333 (542)
T ss_pred             ---------------------------------cC-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceE
Confidence                                             00 02388999999999887 5555666 789999999999987655


Q ss_pred             ccCCC--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeecc
Q 011011          287 ARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  364 (495)
Q Consensus       287 ~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~  364 (495)
                      .....  ....+++|+|++++.++|+|+ ++++++.|+.|||+++|+.+++||+++++.+++.| .++||+|||++++++
T Consensus       334 ~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~  411 (542)
T PRK07786        334 MLLGEDAIRKLGSVGKVIPTVAARVVDE-NMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDE  411 (542)
T ss_pred             ecCcccccccCCCccccCCCceEEEECC-CCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcC
Confidence            33222  234578999999999999994 57889999999999999999999999999999988 479999999999988


Q ss_pred             CCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHH
Q 011011          365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  440 (495)
Q Consensus       365 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~  440 (495)
                                +|.+++.||.||+|+. +|++|+|.+||++|.+||.|.+++|++.+++    .+.+++++...       
T Consensus       412 ----------~g~~~i~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-------  473 (542)
T PRK07786        412 ----------EGYVWVVDRKKDMIIS-GGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRND-------  473 (542)
T ss_pred             ----------CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCC-------
Confidence                      8999999999999997 8999999999999999999999999997643    46677776532       


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          441 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       441 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                              ......+++.++++++++.++     .+++|.++++.+.+.+||+
T Consensus       474 --------~~~~~~~~l~~~l~~~l~~~~-----~P~~i~~v~~iP~t~~GKv  513 (542)
T PRK07786        474 --------DAALTLEDLAEFLTDRLARYK-----HPKALEIVDALPRNPAGKV  513 (542)
T ss_pred             --------CCCCCHHHHHHHHHhhccCCC-----CCCEEEEeccCCCCCcccc
Confidence                    112456788999998888885     5588999999999999986

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.6e-45  Score=389.94  Aligned_cols=336  Identities=20%  Similarity=0.297  Sum_probs=258.0

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccC-CCCCcEEEEECChhhHHHHHHhHhHhhcCceE-Eec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP-AENGDKFLSMLPPWHVYERACGYFIFSRGIEL-MYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~-~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~-~~~-  131 (495)
                      ...++|+++|+|||||||.||||++||+++.+.+......++ +.+++++++++|++|.+++...+.++..|++. ++. 
T Consensus       189 ~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~  268 (612)
T PRK12476        189 ELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSP  268 (612)
T ss_pred             CCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECH
Confidence            356799999999999999999999999999877666555566 67889999999999999987665554444444 432 


Q ss_pred             -----chHhHHHHHh--HhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          132 -----AVRNLKDDLQ--RYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       132 -----~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                           ++..+++.++  +++++.+..+|+++..+........     ..                               
T Consensus       269 ~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~-----~~-------------------------------  312 (612)
T PRK12476        269 TAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPA-----EG-------------------------------  312 (612)
T ss_pred             HHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChh-----hh-------------------------------
Confidence                 4567888884  4889999999998877754210000     00                               


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc---CC---eeeeccC
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---GV---KVQVGYG  277 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~---g~---~v~~~YG  277 (495)
                                                         -...+..+| +++||+++++.. +.+.+.+   |+   .+++.||
T Consensus       313 -----------------------------------~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG  356 (612)
T PRK12476        313 -----------------------------------DDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYG  356 (612)
T ss_pred             -----------------------------------cCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccc
Confidence                                               000122337 899999999887 4455545   44   4899999


Q ss_pred             cccCccceeccCCCC---------------------------CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc
Q 011011          278 LTESSPVIAARRPTC---------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG  330 (495)
Q Consensus       278 ~TE~~~~~~~~~~~~---------------------------~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~  330 (495)
                      +||++..++...+..                           ...+++|+|+++++++|+|+++++++|.|+.|||+++|
T Consensus       357 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g  436 (612)
T PRK12476        357 IAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHG  436 (612)
T ss_pred             hhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcC
Confidence            999876544322110                           12357899999999999998779999999999999999


Q ss_pred             CCcchhccCCchhhhhccCC------------------CCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCC
Q 011011          331 SQVMQGYFKNPSATKQALDE------------------DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLST  392 (495)
Q Consensus       331 p~~~~gY~~~~~~t~~~~~~------------------~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~  392 (495)
                      ++++.||+++|+.|++.|..                  ++||+|||+|+++           +|+++|+||+||+|++ +
T Consensus       437 ~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-----------dG~l~i~GR~~d~I~~-~  504 (612)
T PRK12476        437 DNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-----------DGELYITGRIADLIVI-D  504 (612)
T ss_pred             CcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-----------CCEEEEEeccCcEEEE-C
Confidence            99999999999999998841                  3599999999874           6999999999999998 8


Q ss_pred             ceeecchHHHHHHhc-Ccccce--EEEEecCC---CeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHH
Q 011011          393 GENVEPLELEEAALR-SSLIRQ--IVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELR  466 (495)
Q Consensus       393 G~~v~~~~IE~~l~~-~p~V~~--~~vvg~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  466 (495)
                      |++|+|.|||++|.+ ||.|.+  ++|++.++   +.+.++++..++               ....+.+++.+++++.+.
T Consensus       505 G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~---------------~~~~~~~~l~~~~~~~l~  569 (612)
T PRK12476        505 GRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAG---------------TSRADPAPAIDAIRAAVS  569 (612)
T ss_pred             CcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCC---------------cccccHHHHHHHHHHHHH
Confidence            999999999999985 899999  77777764   357777776542               012456788888998888


Q ss_pred             h-HhccCCCccccEEEec--CCCCCCCCee
Q 011011          467 K-WTSKCSFQIGPIHVVD--EPFTVNFLCL  493 (495)
Q Consensus       467 ~-~~~~~~~~~~~~~~~~--~~~~~~~~~l  493 (495)
                      . ++    ..++.+.+++  +.|.+.+||+
T Consensus       570 ~~~~----~~p~~v~~v~~~~lP~t~~GKi  595 (612)
T PRK12476        570 RRHG----LAVADVRLVPAGAIPRTTSGKL  595 (612)
T ss_pred             HhhC----CcceEEEEECCCCcCcCCchHH
Confidence            5 43    1247788887  5888999986

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.2e-45  Score=381.01  Aligned_cols=326  Identities=21%  Similarity=0.288  Sum_probs=270.9

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhH-hHhhcCceEEe---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMY---  130 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~-~~~~~G~~~~~---  130 (495)
                      ...++++++++|||||||.||+|++||+++......+...++++.+|++++.+|++|.+++...+ .++..|+++++   
T Consensus       148 ~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~  227 (529)
T PRK07867        148 VADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRK  227 (529)
T ss_pred             cCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCC
Confidence            45789999999999999999999999999988887777778889999999999999999987654 45888988887   


Q ss_pred             cchHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          131 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       131 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                      +++..+++.++++++|.+..+|+.+..++......                                             
T Consensus       228 ~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~---------------------------------------------  262 (529)
T PRK07867        228 FSASGFLPDVRRYGATYANYVGKPLSYVLATPERP---------------------------------------------  262 (529)
T ss_pred             CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcc---------------------------------------------
Confidence            46889999999999999999999887664321000                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                    ......+| +++||+.+++...++.+.+|.++++.||+||++....... 
T Consensus       263 ------------------------------~~~~~~lr-~~~gg~~~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~-  310 (529)
T PRK07867        263 ------------------------------DDADNPLR-IVYGNEGAPGDIARFARRFGCVVVDGFGSTEGGVAITRTP-  310 (529)
T ss_pred             ------------------------------cccccceE-EEecCCCChHHHHHHHHHhCCcEEEeecccccccccccCC-
Confidence                                          00011235 3568888888888888888999999999999886544322 


Q ss_pred             CCCCccccccCcCCcEEEEEeCCCCCcCCCCC------------ccEEEE-ccCCcchhccCCchhhhhccCCCCccccC
Q 011011          291 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGS------------KGIVKV-RGSQVMQGYFKNPSATKQALDEDGWLNTG  357 (495)
Q Consensus       291 ~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~------------~GEl~v-~~p~~~~gY~~~~~~t~~~~~~~~~~~TG  357 (495)
                       ....+++|.|.++  ++++|++++.+++.|+            .|||++ +|++++.||+++++.+.+.|. +|||+||
T Consensus       311 -~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~-~g~~~TG  386 (529)
T PRK07867        311 -DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR-GGVYWSG  386 (529)
T ss_pred             -CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhc-CCeEeec
Confidence             2345689999998  7788887888899988            999999 999999999999999998884 8999999


Q ss_pred             ceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChH
Q 011011          358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE  433 (495)
Q Consensus       358 Dl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~  433 (495)
                      |++++++          +|++++.||+||+|++ +|++|+|.+||++|.+||.|.+|+|+|.+++    .+.++++..++
T Consensus       387 D~~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~  455 (529)
T PRK07867        387 DLAYRDA----------DGYAYFAGRLGDWMRV-DGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPG  455 (529)
T ss_pred             cEEEEeC----------CCcEEEeccccCeEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCC
Confidence            9999998          8999999999999998 8999999999999999999999999998753    56677776543


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHH--HHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          434 EVLMAAKRLSIVHADASELSKEKTISLLYGE--LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                      ...+.+++++++++.  |+.++     .+++|.++++.+.+.+||+
T Consensus       456 ----------------~~~~~~~l~~~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~GKv  496 (529)
T PRK07867        456 ----------------AKFDPDAFAEFLAAQPDLGPKQ-----WPSYVRVCAELPRTATFKV  496 (529)
T ss_pred             ----------------CCCCHHHHHHHHHhhccCCccc-----CCeEEEEeeccCCCCCcce
Confidence                            335678888888764  66565     5589999999999999997

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.8e-45  Score=378.20  Aligned_cols=330  Identities=24%  Similarity=0.344  Sum_probs=275.8

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHh-HhHhhcCceEEe---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMY---  130 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~---  130 (495)
                      ...++++++++|||||||.||+|++||+++..........+++..+++++..+|++|.+++... +..+..|+++++   
T Consensus       145 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~  224 (497)
T PRK06145        145 AVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHRE  224 (497)
T ss_pred             CCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCc
Confidence            4567999999999999999999999999988766555566788899999999999999988663 556788888876   


Q ss_pred             cchHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          131 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       131 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                      .++..+++.++++++|.+.++|+++..++......                                             
T Consensus       225 ~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~---------------------------------------------  259 (497)
T PRK06145        225 FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD---------------------------------------------  259 (497)
T ss_pred             CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcc---------------------------------------------
Confidence            36889999999999999999999998776531100                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccceecc
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                    ...+..+|.+++||++++..+ +.+.+.+ +.++++.||+||++...+..
T Consensus       260 ------------------------------~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~  309 (497)
T PRK06145        260 ------------------------------RFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLM  309 (497)
T ss_pred             ------------------------------ccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceec
Confidence                                          011223488999999999987 5555666 67899999999998765543


Q ss_pred             CC--CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCC
Q 011011          289 RP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  366 (495)
Q Consensus       289 ~~--~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~  366 (495)
                      ..  .....+++|.|+++++++++|+ .+++++.|+.|||+++|++++.||+++++.+++.| .++||+|||++++++  
T Consensus       310 ~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~--  385 (497)
T PRK06145        310 EAGREIEKIGSTGRALAHVEIRIADG-AGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDE--  385 (497)
T ss_pred             cCccccccCCCcccCCCCceEEEECC-CCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcC--
Confidence            22  2234578999999999999995 57889999999999999999999999999999988 478999999999998  


Q ss_pred             CCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHc
Q 011011          367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  442 (495)
Q Consensus       367 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~  442 (495)
                              +|+++++||.||+|+. +|++|+|.+||++|.++|.|.+++|++.+++    .+.+++++.+.         
T Consensus       386 --------~g~l~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---------  447 (497)
T PRK06145        386 --------EGFLYLTDRKKDMIIS-GGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPG---------  447 (497)
T ss_pred             --------CCcEEEeccccceEEe-CCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCC---------
Confidence                    8999999999999997 8999999999999999999999999998653    56788887642         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          443 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       443 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                             .....+++.++++++|+.+.     .+++|.++++.+.+.+||+
T Consensus       448 -------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~GKi  486 (497)
T PRK06145        448 -------ATLTLEALDRHCRQRLASFK-----VPRQLKVRDELPRNPSGKV  486 (497)
T ss_pred             -------CCCCHHHHHHHHHHhhhcCC-----CCCEEEEeccCCCCCcccc
Confidence                   23456889999999998886     4588999999999999987

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-44  Score=381.51  Aligned_cols=334  Identities=27%  Similarity=0.412  Sum_probs=269.6

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHh--hcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL--YDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~  131 (495)
                      ....++++++++|||||||.||||++||+++.......  ...+++..++++++.+|++|.+++...+.++..|.++++.
T Consensus       176 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~l~~g~~~~~~  255 (576)
T PRK05620        176 PELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPLAAFMSGTPLVFP  255 (576)
T ss_pred             CCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHHHHHhcCceEEec
Confidence            34578999999999999999999999999986544332  2346788899999999999999988888888899998764


Q ss_pred             ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                          ++..+++.+++++++.+.++|+++..++.......                                         
T Consensus       256 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------------  294 (576)
T PRK05620        256 GPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP-----------------------------------------  294 (576)
T ss_pred             CCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC-----------------------------------------
Confidence                57899999999999999999999987765321100                                         


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCcccee
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~  286 (495)
                                                        .....+|.+++||+++++.+ ..+.+.+|+++++.||+||++....
T Consensus       295 ----------------------------------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~  340 (576)
T PRK05620        295 ----------------------------------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGT  340 (576)
T ss_pred             ----------------------------------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeecccccccccee
Confidence                                              00112488999999999887 4555668999999999999987655


Q ss_pred             ccCCCC--------CCccccccCcCCcEEEEEeCCCCCcCC--CCCccEEEEccCCcchhccCCchhh------------
Q 011011          287 ARRPTC--------NVLGSVGHPINHTEIKIVDAETNEVLP--AGSKGIVKVRGSQVMQGYFKNPSAT------------  344 (495)
Q Consensus       287 ~~~~~~--------~~~~~~G~p~~~~~v~i~d~~~~~~~~--~g~~GEl~v~~p~~~~gY~~~~~~t------------  344 (495)
                      ...+..        ....++|++.++++++++|+  +..++  +|..|||+++|+.++.||+++++.+            
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~--g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~  418 (576)
T PRK05620        341 VARPPSGVSGEARWAYRVSQGRFPASLEYRIVND--GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGED  418 (576)
T ss_pred             eeccCCccccccccccccccCCcCCceeEEEecC--CccccCCCCCceEEEEEcCcccccccCCcccccccccccccccc
Confidence            433211        12346899999999999985  55553  5789999999999999999999988            


Q ss_pred             ----hhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC
Q 011011          345 ----KQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD  420 (495)
Q Consensus       345 ----~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~  420 (495)
                          ...|..+|||+|||++++++          +|++++.||.||+|+. +|++|+|.+||++|.+||.|.+|+|++.+
T Consensus       419 ~~~~~~~~~~~g~~~TGD~~~~~~----------dg~l~~~GR~~d~i~~-~G~~i~~~eIE~~l~~~p~v~~~~vv~~~  487 (576)
T PRK05620        419 VEDANDRFTADGWLRTGDVGSVTR----------DGFLTIHDRARDVIRS-GGEWIYSAQLENYIMAAPEVVECAVIGYP  487 (576)
T ss_pred             chhhhcccccCCcEecCceEEEcC----------CceEEEEechhhhhhc-CCEEEcHHHHHHHHhcCCCceEEEEEecc
Confidence                33455678999999999998          8999999999999996 89999999999999999999999999987


Q ss_pred             CC----eeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          421 QR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       421 ~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      +.    .+.++++..++.             ...+...++++++++++|+.++     .++.|.++++.+.+.+||+
T Consensus       488 ~~~~g~~~~a~v~~~~~~-------------~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~~P~t~~GKv  546 (576)
T PRK05620        488 DDKWGERPLAVTVLAPGI-------------EPTRETAERLRDQLRDRLPNWM-----LPEYWTFVDEIDKTSVGKF  546 (576)
T ss_pred             CCCcCceeEEEEEecCCC-------------CcccccHHHHHHHHHhhCcccc-----CCeEEEEeccCCCCCcccC
Confidence            64    355666665420             1122356889999999999987     4488999999999999986

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=2.1e-44  Score=377.00  Aligned_cols=330  Identities=23%  Similarity=0.315  Sum_probs=276.1

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---c
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A  132 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---~  132 (495)
                      ...+++++++|||||||.||+|++||+++...+......+++..+|++++++|++|++++...+.++..|+++++.   +
T Consensus       158 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~  237 (515)
T TIGR03098       158 VIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLL  237 (515)
T ss_pred             CCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCCEEEEcCCCC
Confidence            4568999999999999999999999999988877777777888999999999999999998888889999999874   5


Q ss_pred             hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHH
Q 011011          133 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  212 (495)
Q Consensus       133 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  212 (495)
                      +..+++.++++++|++.++|+++..+......                                                
T Consensus       238 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------------------------------  269 (515)
T TIGR03098       238 PRDVLKALEKHGITGLAAVPPLWAQLAQLDWP------------------------------------------------  269 (515)
T ss_pred             HHHHHHHHHHcCCceEecChHHHHHHHhcccC------------------------------------------------
Confidence            78999999999999999999999877542000                                                


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccceeccCC
Q 011011          213 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                  ...+..+|.+++||+++++.+ ..+.+.+ +..+++.||+||++........
T Consensus       270 ----------------------------~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~  321 (515)
T TIGR03098       270 ----------------------------ESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPE  321 (515)
T ss_pred             ----------------------------CCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccc
Confidence                                        011223489999999999987 4555566 6889999999998765443322


Q ss_pred             -CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC-----------CCccccCc
Q 011011          291 -TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-----------DGWLNTGD  358 (495)
Q Consensus       291 -~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~-----------~~~~~TGD  358 (495)
                       .....+++|+|+++++++|+| +++++++.|+.|||+++|+.++.||+++++.+++.|..           ++||+|||
T Consensus       322 ~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD  400 (515)
T TIGR03098       322 EVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGD  400 (515)
T ss_pred             cccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccc
Confidence             134567899999999999999 45888999999999999999999999999998877643           24899999


Q ss_pred             eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHH
Q 011011          359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE  434 (495)
Q Consensus       359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~  434 (495)
                      +|++++          +|++++.||.||+|+. +|.+|+|.+||+++.+||.|.+++|++.++    +.+.+++++... 
T Consensus       401 ~~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~-  468 (515)
T TIGR03098       401 TVRRDE----------EGFLYFVGRRDEMIKT-SGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGG-  468 (515)
T ss_pred             eEEEcC----------CceEEEEeccccceec-CCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCC-
Confidence            999988          8999999999999997 899999999999999999999999999765    346677765432 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          435 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                                     ...+.++++++++++|+.++     .++.|.++++.+.+.+||+.
T Consensus       469 ---------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~iP~t~~GK~~  508 (515)
T TIGR03098       469 ---------------EELDRAALLAECRARLPNYM-----VPALIHVRQALPRNANGKID  508 (515)
T ss_pred             ---------------CCCCHHHHHHHHHhhCcccc-----CCCEEEEeccCCCCCCCCCc
Confidence                           33466889999999888886     55889999999999999873

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.5e-45  Score=452.27  Aligned_cols=330  Identities=20%  Similarity=0.258  Sum_probs=283.5

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      ....+++++||+|||||||.||||+++|+++.+.+......++++++|+++++.|+.|..+....+.++..|+++++.  
T Consensus      3232 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~ 3311 (3956)
T PRK12467       3232 TRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDN 3311 (3956)
T ss_pred             ccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCc
Confidence            346789999999999999999999999999999988888889999999999999999999987788889999999874  


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++..+|+++..+++....                                            
T Consensus      3312 ~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~-------------------------------------------- 3347 (3956)
T PRK12467       3312 DLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG-------------------------------------------- 3347 (3956)
T ss_pred             ccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc--------------------------------------------
Confidence               477899999999999999999998877542100                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcccee
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  286 (495)
                                                       ..+..+|.+++||++++++. +.+.+.+ +..++|.||+||++..++
T Consensus      3348 ---------------------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 3394 (3956)
T PRK12467       3348 ---------------------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVT 3394 (3956)
T ss_pred             ---------------------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeE
Confidence                                             12233589999999999887 5555555 678999999999987665


Q ss_pred             ccCCCC-----CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCC-------cc
Q 011011          287 ARRPTC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG-------WL  354 (495)
Q Consensus       287 ~~~~~~-----~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~-------~~  354 (495)
                      ......     ....++|+|+++++++|+| +.++++|.|+.|||+|+|+.+++||+|+|++|+++|..++       ||
T Consensus      3395 ~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~y 3473 (3956)
T PRK12467       3395 LWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLY 3473 (3956)
T ss_pred             EEecccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceee
Confidence            432211     2236799999999999999 5589999999999999999999999999999999997654       59


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC---CCeeEEEEecC
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPD  431 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~---~~~~~a~vv~~  431 (495)
                      +|||+|++++          ||.++|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+   .++++|+|++.
T Consensus      3474 rTGDl~~~~~----------dG~l~~~GR~d~~iki-~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v~~~ 3542 (3956)
T PRK12467       3474 RTGDLARYRA----------DGVIEYLGRIDHQVKI-RGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYVVPA 3542 (3956)
T ss_pred             ccchhheecC----------CCcEEEeccccceEee-ceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEEeCC
Confidence            9999999999          8999999999999998 99999999999999999999999999865   35788999976


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          432 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ..                .....++++++++++|+.|+.|     ..|..+++.+.+.|||+
T Consensus      3543 ~~----------------~~~~~~~l~~~l~~~Lp~y~vP-----~~~~~l~~lP~t~~GKi 3583 (3956)
T PRK12467       3543 DP----------------QGDWRETLRDHLAASLPDYMVP-----AQLLVLAAMPLGPNGKV 3583 (3956)
T ss_pred             CC----------------CcccHHHHHHHHhccCChhhCC-----CeeeeeccCCCCCCCcc
Confidence            42                2345688999999999999855     78899999999999997

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.1e-44  Score=380.77  Aligned_cols=331  Identities=26%  Similarity=0.411  Sum_probs=277.5

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHh-HhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~~--  131 (495)
                      ...++++++++|||||||.||+|.+||+++...+......+++.++|++++.+|++|.++.... +.++..|+++++.  
T Consensus       197 ~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~  276 (558)
T PRK12583        197 SLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNE  276 (558)
T ss_pred             ccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecC
Confidence            3468899999999999999999999999998887777777888999999999999999998774 4457888888853  


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..++..++++++|.+.++|+++..++.......                                           
T Consensus       277 ~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-------------------------------------------  313 (558)
T PRK12583        277 AFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGN-------------------------------------------  313 (558)
T ss_pred             CCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccC-------------------------------------------
Confidence              57888999999999999999999876543211000                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcC-CeeeeccCcccCccceec
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~  287 (495)
                                                      ..+..+|.+++||+++++.+ ..+.+.++ ..+++.||+||++.+...
T Consensus       314 --------------------------------~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~  361 (558)
T PRK12583        314 --------------------------------FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQ  361 (558)
T ss_pred             --------------------------------CCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceec
Confidence                                            01123488999999999887 55566775 469999999999877664


Q ss_pred             cCCC---CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeecc
Q 011011          288 RRPT---CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  364 (495)
Q Consensus       288 ~~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~  364 (495)
                      ....   .....++|.|++++.++|+|++ +++++.|+.|||+++|+.++.||+++++.+...|..++||+|||+|++++
T Consensus       362 ~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~  440 (558)
T PRK12583        362 TTAADDLERRVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDE  440 (558)
T ss_pred             cCcccccccccCCCCccCCCCeEEEECCC-CCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECC
Confidence            4321   2345789999999999999987 89999999999999999999999999999999887789999999999998


Q ss_pred             CCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHH
Q 011011          365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  440 (495)
Q Consensus       365 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~  440 (495)
                                +|++++.||+||+|+. +|.+|+|.+||+++.+||.|.+++|++.++.    .+.+++++.++       
T Consensus       441 ----------dg~l~i~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-------  502 (558)
T PRK12583        441 ----------QGYVRIVGRSKDMIIR-GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPG-------  502 (558)
T ss_pred             ----------CccEEEEecccceeEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCC-------
Confidence                      8999999999999997 8999999999999999999999999997653    46677776542       


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          441 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       441 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                               ...+.++++++++++|+.+.     .+++|.++++.+.+.+||+
T Consensus       503 ---------~~~~~~~i~~~~~~~L~~~~-----~P~~i~~v~~lP~t~sGK~  541 (558)
T PRK12583        503 ---------HAASEEELREFCKARIAHFK-----VPRYFRFVDEFPMTVTGKV  541 (558)
T ss_pred             ---------CCCCHHHHHHHHHhhcccCc-----CCcEEEEeccCCCCCCCCc
Confidence                     23456789999999998875     4588999999999999986

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=5.6e-45  Score=420.27  Aligned_cols=332  Identities=20%  Similarity=0.246  Sum_probs=280.1

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec----
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----  131 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~----  131 (495)
                      ..++++++|+|||||||.||||+++|+++.+.+.+....+++.++|++++..|++|..+....+.++..|+++++.    
T Consensus       595 ~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~  674 (1296)
T PRK10252        595 SQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEA  674 (1296)
T ss_pred             CCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhc
Confidence            3688999999999999999999999999999888888889999999999999999998887778889999999874    


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..+++.++++++|++.++|+++..++.......                                           
T Consensus       675 ~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~-------------------------------------------  711 (1296)
T PRK10252        675 HRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG-------------------------------------------  711 (1296)
T ss_pred             cCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc-------------------------------------------
Confidence              47789999999999999999999987765321100                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceecc
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                    ....+..+|.+++||+++++.+ +.+.+.++.+++|.||+||++..++..
T Consensus       712 ------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~  761 (1296)
T PRK10252        712 ------------------------------ARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWY  761 (1296)
T ss_pred             ------------------------------ccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeee
Confidence                                          0012234588999999999987 455555789999999999998665543


Q ss_pred             CCC-------CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCC------Cccc
Q 011011          289 RPT-------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED------GWLN  355 (495)
Q Consensus       289 ~~~-------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~------~~~~  355 (495)
                      ...       .....++|.|++++.++|+| +.++++|.|+.|||+|+|+.+++||+++|+.|++.|..+      +||+
T Consensus       762 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~  840 (1296)
T PRK10252        762 PAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYR  840 (1296)
T ss_pred             ecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEe
Confidence            321       12345789999999999999 568999999999999999999999999999999998543      4999


Q ss_pred             cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEec---------CC-CeeE
Q 011011          356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ---------DQ-RRPG  425 (495)
Q Consensus       356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~---------~~-~~~~  425 (495)
                      |||+|++++          +|.++++||+||+||+ +|++|+|.|||++|.+||.|.+++|+..         ++ ..+.
T Consensus       841 TGDl~~~~~----------~G~l~~~GR~d~~ik~-~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lv  909 (1296)
T PRK10252        841 TGDVARWLD----------DGAVEYLGRSDDQLKI-RGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLV  909 (1296)
T ss_pred             cCceEEEcC----------CCcEEEecccCCeEEE-eeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEE
Confidence            999999998          8999999999999998 9999999999999999999999987653         11 3688


Q ss_pred             EEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          426 AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       426 a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ++|++..+                ...+.++++++++++|+.|+.|     ..|..+++.+.+.|||+
T Consensus       910 a~v~~~~~----------------~~~~~~~l~~~l~~~Lp~~~~P-----~~~~~~~~lP~t~~GKi  956 (1296)
T PRK10252        910 GYLVSQSG----------------LPLDTSALQAQLRERLPPHMVP-----VVLLQLDQLPLSANGKL  956 (1296)
T ss_pred             EEEEcCCC----------------CCCCHHHHHHHHHhhCchhcCC-----cEEEEecCCCCCCCcCh
Confidence            99987643                2345788999999999999854     78999999999999987

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.7e-44  Score=377.89  Aligned_cols=328  Identities=26%  Similarity=0.417  Sum_probs=266.7

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHH--HHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI--RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~--~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-  131 (495)
                      ...++++++++|||||||.||+|++||+++....  ......++..++|++++++|++|++++...+.++..|+++++. 
T Consensus       172 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~~~~~  251 (539)
T PRK07008        172 RFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPG  251 (539)
T ss_pred             cCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhcCceEEEec
Confidence            4567899999999999999999999999986432  2333456788899999999999998887767778899998874 


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|.+.++|+++..+++......                                          
T Consensus       252 ~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~------------------------------------------  289 (539)
T PRK07008        252 PDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG------------------------------------------  289 (539)
T ss_pred             CCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC------------------------------------------
Confidence               57889999999999999999999988765321100                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                       ..+.++|.+++||+++++.+ ..+.+.+++++++.||+||++..++.
T Consensus       290 ---------------------------------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~  336 (539)
T PRK07008        290 ---------------------------------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTL  336 (539)
T ss_pred             ---------------------------------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceeccccccccccccee
Confidence                                             12234488899999999987 55556789999999999999865543


Q ss_pred             cCCCC-----------CCccccccCcCCcEEEEEeCCCCCcCCCC--CccEEEEccCCcchhccCCchhhhhccCCCCcc
Q 011011          288 RRPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL  354 (495)
Q Consensus       288 ~~~~~-----------~~~~~~G~p~~~~~v~i~d~~~~~~~~~g--~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~  354 (495)
                      .....           ....++|.|+|+++++|+|+ ++++++.+  +.|||+++|+.++.||+++++   ..+. +|||
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~-~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~-~g~~  411 (539)
T PRK07008        337 CKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGD-DGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLV-DGWF  411 (539)
T ss_pred             cccccccccCCchhhhhhcccCCccccceEEEEECC-CCCccCCCCCcceEEEEeCCccchhhcCChh---hhhc-CCCc
Confidence            32110           12357899999999999995 57777753  579999999999999999983   3343 7899


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEec
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  430 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~  430 (495)
                      +|||++++++          +|++++.||.+|+|+. +|.+|+|.+||+++.+||.|.++++++.++.    .+.++|+.
T Consensus       412 ~TGD~~~~~~----------dg~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~  480 (539)
T PRK07008        412 PTGDVATIDA----------DGFMQITDRSKDVIKS-GGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVK  480 (539)
T ss_pred             ccCceEEEcC----------CCcEEEeecccCEEEe-CCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEe
Confidence            9999999998          8999999999999996 8999999999999999999999999998753    45677766


Q ss_pred             ChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          431 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                      .++                ...+.++++++++++|+.|+     .++.|.++++.+.+.+||+.
T Consensus       481 ~~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~lP~t~sgKi~  523 (539)
T PRK07008        481 RPG----------------AEVTREELLAFYEGKVAKWW-----IPDDVVFVDAIPHTATGKLQ  523 (539)
T ss_pred             CCC----------------CccCHHHHHHHHHhhccccc-----CCeEEEEecCCCCCCcccee
Confidence            542                23467889999999998886     55899999999999999873

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=7.2e-45  Score=415.08  Aligned_cols=330  Identities=27%  Similarity=0.414  Sum_probs=275.2

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      ...+++|+++++|||||||.||+|++||+++..........++..++|++++.+|++|.+++.. .+.++..|+++++. 
T Consensus       777 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~  856 (1146)
T PRK08633        777 PTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHP  856 (1146)
T ss_pred             CCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeC
Confidence            3457899999999999999999999999999988888777788899999999999999999876 56678888888763 


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|.+.++|+++..+.+.....                                           
T Consensus       857 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------  893 (1146)
T PRK08633        857 DPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLH-------------------------------------------  893 (1146)
T ss_pred             CCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccC-------------------------------------------
Confidence               5788999999999999999999998775521100                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                      ...++.+|.+++||+++++++ +.+.+.+|.++++.||+||++..++.
T Consensus       894 --------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~  941 (1146)
T PRK08633        894 --------------------------------PLMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASV  941 (1146)
T ss_pred             --------------------------------cccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEE
Confidence                                            012334589999999999987 55556789999999999999877654


Q ss_pred             cCCC----------CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC---CCcc
Q 011011          288 RRPT----------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE---DGWL  354 (495)
Q Consensus       288 ~~~~----------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~---~~~~  354 (495)
                      ..+.          ....+++|+|+|+++++|+|+++++++|+|+.|||+++|++++.||+++|+.|++.+.+   ++||
T Consensus       942 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~ 1021 (1146)
T PRK08633        942 NLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWY 1021 (1146)
T ss_pred             ecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeE
Confidence            4321          12467899999999999999988999999999999999999999999999999988853   3899


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCc--ccceEEEEecCCC----eeEEEE
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS--LIRQIVVIGQDQR----RPGAII  428 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p--~V~~~~vvg~~~~----~~~a~v  428 (495)
                      +|||+|++++          ||++++.||.||+|++ +|++|+|.|||+++.+||  .+.+++|++.+++    .+.+++
T Consensus      1022 ~TGD~~~~~~----------~g~l~~~gR~~d~i~~-~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v 1090 (1146)
T PRK08633       1022 VTGDKGHLDE----------DGFLTITDRYSRFAKI-GGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLH 1090 (1146)
T ss_pred             ECCCEEEEcC----------CceEEEEecccchhhh-CcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEE
Confidence            9999999999          8999999999999997 899999999999999999  5678999998765    355666


Q ss_pred             ecChHHHHHHHHHcCCCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          429 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       429 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ++.                   ..+.+++++.+.+ .++.++     .++++..+++.+.+.+||+
T Consensus      1091 ~~~-------------------~~~~~~l~~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~GKi 1132 (1146)
T PRK08633       1091 TCG-------------------AEDVEELKRAIKESGLPNLW-----KPSRYFKVEALPLLGSGKL 1132 (1146)
T ss_pred             ecC-------------------ccCHHHHHHHHHhcCCCccc-----CCcEEEEecCcCCCCCCCC
Confidence            642                   1245667777764 466665     5578999999999999986

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=1.5e-44  Score=370.49  Aligned_cols=311  Identities=21%  Similarity=0.260  Sum_probs=251.3

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecch--
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAV--  133 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~~--  133 (495)
                      ..++++++++|||||||.||||++||+++...+......+++.+ ++.++++|++|.+|+...+.++..|+++++.+.  
T Consensus       117 ~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~  195 (452)
T PRK07445        117 PNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKR  195 (452)
T ss_pred             CCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHh
Confidence            46789999999999999999999999999887776666566654 467889999999999877778999999987642  


Q ss_pred             -HhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHH
Q 011011          134 -RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  212 (495)
Q Consensus       134 -~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  212 (495)
                       ........+++++++..+|+++..+.....                                                 
T Consensus       196 ~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~~-------------------------------------------------  226 (452)
T PRK07445        196 LKSGQELPPNPSDFFLSLVPTQLQRLLQLRP-------------------------------------------------  226 (452)
T ss_pred             ccchhhhhhhcCceEEEehHHHHHHHHhhCh-------------------------------------------------
Confidence             222233456788999999999987754100                                                 


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCCCC
Q 011011          213 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC  292 (495)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~  292 (495)
                                                   ..+..+|.+++||+++++.+.+..+.+++++++.||+||++..+....+..
T Consensus       227 -----------------------------~~l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~  277 (452)
T PRK07445        227 -----------------------------QWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPDD  277 (452)
T ss_pred             -----------------------------hhhhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCchh
Confidence                                         112234899999999998875555567899999999999876544333222


Q ss_pred             --CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCC
Q 011011          293 --NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  370 (495)
Q Consensus       293 --~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~  370 (495)
                        ...+++|+|.++++++|+         .|+.|||+++||.++.||++++.      ..++||+|||+|++++      
T Consensus       278 ~~~~~~~~G~~~p~~~v~i~---------~g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~------  336 (452)
T PRK07445        278 FLAGNNSSGQVLPHAQITIP---------ANQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDA------  336 (452)
T ss_pred             hccCCCcCCccCCCCeEEEc---------CCCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEEcC------
Confidence              235689999999999987         35689999999999999998643      2478999999999998      


Q ss_pred             ccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCCCc
Q 011011          371 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  446 (495)
Q Consensus       371 ~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  446 (495)
                          ||+++|.||.||+|+. +|++|+|.+||++|.+||.|.+|+|++.+++    .+.|++++..+             
T Consensus       337 ----dG~l~~~GR~dd~I~~-~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-------------  398 (452)
T PRK07445        337 ----QGYLHILGRNSQKIIT-GGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-------------  398 (452)
T ss_pred             ----CCCEEEEeecCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-------------
Confidence                8999999999999997 8999999999999999999999999998764    46678876532             


Q ss_pred             CCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          447 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       447 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                          ..+.++++++++++|+.++     .+++|.++++.+.+.+||+
T Consensus       399 ----~~~~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  436 (452)
T PRK07445        399 ----SISLEELKTAIKDQLSPFK-----QPKHWIPVPQLPRNPQGKI  436 (452)
T ss_pred             ----CCCHHHHHHHHHHhCCccc-----CCeEEEEecCCCCCCCccc
Confidence                2356789999999998886     5588999999999999986

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.1e-44  Score=380.72  Aligned_cols=330  Identities=28%  Similarity=0.461  Sum_probs=268.2

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccC---------CCC-CcEEEEECChhhHHHHHHh-HhHhh
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP---------AEN-GDKFLSMLPPWHVYERACG-YFIFS  123 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~---------~~~-~d~~l~~~p~~h~~~~~~~-~~~~~  123 (495)
                      ..+.+++++|+|||||||.||||++||+++..........+.         +.. ++++++.+|++|++++... +..+.
T Consensus       203 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~  282 (562)
T PRK12492        203 PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMV  282 (562)
T ss_pred             CCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhh
Confidence            456789999999999999999999999998766555433222         223 3577899999999998764 34466


Q ss_pred             cCceEEec----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhcccc
Q 011011          124 RGIELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCL  199 (495)
Q Consensus       124 ~G~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (495)
                      .|...++.    ++..++..++++++|.+.++|+++..+.......                                  
T Consensus       283 ~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~----------------------------------  328 (562)
T PRK12492        283 SGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFK----------------------------------  328 (562)
T ss_pred             cCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcc----------------------------------
Confidence            77765542    5678899999999999999999998775431100                                  


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCc
Q 011011          200 TRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGL  278 (495)
Q Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~  278 (495)
                                                               ...+..+|.+++||+++++.+ +.+.+.+++++++.||+
T Consensus       329 -----------------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~  367 (562)
T PRK12492        329 -----------------------------------------DLDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGL  367 (562)
T ss_pred             -----------------------------------------cccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCc
Confidence                                                     011234589999999999987 45556679999999999


Q ss_pred             ccCccceeccCCC-CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccC
Q 011011          279 TESSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG  357 (495)
Q Consensus       279 TE~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TG  357 (495)
                      ||++.++...... ....+++|+|++++.++|+|+ .++++++|+.|||+++|+.++.||+++++.|.+.|..++||+||
T Consensus       368 tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  446 (562)
T PRK12492        368 TETSPVASTNPYGELARLGTVGIPVPGTALKVIDD-DGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG  446 (562)
T ss_pred             cccCceeeecCCcccccCCccceecCCCEEEEECC-CCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecC
Confidence            9998766544322 234578999999999999996 57889999999999999999999999999999999878999999


Q ss_pred             ceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChH
Q 011011          358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE  433 (495)
Q Consensus       358 Dl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~  433 (495)
                      |+|++++          +|+++|.||.||+|+. +|++|+|.+||+.+.+||.|.+++|++.++.    .+.+++++.. 
T Consensus       447 D~g~~~~----------~G~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~-  514 (562)
T PRK12492        447 DIAVIDP----------DGFVRIVDRKKDLIIV-SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARD-  514 (562)
T ss_pred             cEEEECC----------CCeEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC-
Confidence            9999998          8999999999999998 7999999999999999999999999998653    4556666542 


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          434 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                      ...+.++++++++++|+.+.     .+.+|.++++.+.+.+||+
T Consensus       515 ----------------~~~~~~~i~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~GK~  553 (562)
T PRK12492        515 ----------------PGLSVEELKAYCKENFTGYK-----VPKHIVLRDSLPMTPVGKI  553 (562)
T ss_pred             ----------------CCCCHHHHHHHHHHhccccc-----CCcEEEEeccCCCCCCCce
Confidence                            12356789999999998886     5588999999999999986

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=5.9e-45  Score=455.61  Aligned_cols=329  Identities=20%  Similarity=0.263  Sum_probs=285.7

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---  131 (495)
                      ...++++++|+|||||||.||||+++|+++.+.+.+....+++.++|++++.+|++|.++....+.++..|+++++.   
T Consensus       651 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~  730 (5163)
T PRK12316        651 ELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPG  730 (5163)
T ss_pred             CCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCcc
Confidence            45789999999999999999999999999999988888889999999999999999999988888889999999874   


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++.++|+++..|.....                                             
T Consensus       731 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---------------------------------------------  765 (5163)
T PRK12316        731 DHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED---------------------------------------------  765 (5163)
T ss_pred             ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc---------------------------------------------
Confidence               57889999999999999999999987754210                                             


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcccee
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  286 (495)
                                                      ...+..+|.+++||+++++++ +.+.+.+ +.+++|.||+||++..++
T Consensus       766 --------------------------------~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~  813 (5163)
T PRK12316        766 --------------------------------VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVT  813 (5163)
T ss_pred             --------------------------------cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeee
Confidence                                            012234589999999999987 5555554 789999999999985443


Q ss_pred             ccC--CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC------CCccccCc
Q 011011          287 ARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGD  358 (495)
Q Consensus       287 ~~~--~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~------~~~~~TGD  358 (495)
                      ...  .......++|+|+++++++|+|+ .++++|.|+.|||+|+|+++++||+++|+.|++.|..      ++||+|||
T Consensus       814 ~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGD  892 (5163)
T PRK12316        814 HWTCVEEGGDSVPIGRPIANLACYILDA-NLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGD  892 (5163)
T ss_pred             EEecccccCCCCCCccccCCCEEEEECC-CCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCc
Confidence            322  22234568999999999999995 4889999999999999999999999999999998843      45999999


Q ss_pred             eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCeeEEEEecChHHHHHH
Q 011011          359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMA  438 (495)
Q Consensus       359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~~~a~vv~~~~~~~~~  438 (495)
                      +|++++          ||.++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+...++|+|++.++     
T Consensus       893 l~~~~~----------dG~l~~~GR~d~~ik~-~G~rI~~~EIE~~l~~~p~V~~a~V~~~~~~~lva~vv~~~~-----  956 (5163)
T PRK12316        893 LARYRA----------DGVIEYAGRIDHQVKL-RGLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESE-----  956 (5163)
T ss_pred             cEEECC----------CCCEEeecccCCEEEE-ceEEcChHHHHHHHHhCCCcceEEEEEcCCCeEEEEEEccCC-----
Confidence            999998          8999999999999998 899999999999999999999999999988889999998653     


Q ss_pred             HHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          439 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                 .....++++++++++|+.|+.|     +.|.++++.+.+.|||+
T Consensus       957 -----------~~~~~~~l~~~l~~~Lp~y~vP-----~~i~~v~~lP~t~~GKi  995 (5163)
T PRK12316        957 -----------GGDWREALKAHLAASLPEYMVP-----AQWLALERLPLTPNGKL  995 (5163)
T ss_pred             -----------CCCCHHHHHHHHHhhCCCccCC-----CeEEEHhhCCCCCCCCh
Confidence                       2345788999999999999855     88999999999999997

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-44  Score=379.68  Aligned_cols=329  Identities=24%  Similarity=0.359  Sum_probs=268.3

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh-ccc-CCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEe--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY-DIV-PAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY--  130 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~-~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~--  130 (495)
                      ...++++++|+|||||||.||+|++||+++...+.... ..+ +...+|+.+.++|++|.+++...+ .+..|++.++  
T Consensus       159 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~~~~~  237 (528)
T PRK07470        159 AVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVARGAATVLLP  237 (528)
T ss_pred             cCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHhcCceEEEec
Confidence            45779999999999999999999999999875544322 222 467789999999999999986544 4555655543  


Q ss_pred             ---cchHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          131 ---TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       131 ---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                         .+++.+++.++++++|++.++|+++..+.+.....                                          
T Consensus       238 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------  275 (528)
T PRK07470        238 SERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVD------------------------------------------  275 (528)
T ss_pred             ccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcC------------------------------------------
Confidence               25788999999999999999999998775421100                                          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCcccee
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~  286 (495)
                                                       ...++.+|.+++||++++... +.+.+.+|.++++.||+||++..++
T Consensus       276 ---------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~  322 (528)
T PRK07470        276 ---------------------------------RYDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNIT  322 (528)
T ss_pred             ---------------------------------CCCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCcee
Confidence                                             012234589999999998876 5566678999999999999887655


Q ss_pred             ccCC--------CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCc
Q 011011          287 ARRP--------TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  358 (495)
Q Consensus       287 ~~~~--------~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGD  358 (495)
                      ....        .....+++|.|+++++++++|+ .+++++.|+.|||+++|+.++.||+++++.+++.| .++||+|||
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~-~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD  400 (528)
T PRK07470        323 VLPPALHDAEDGPDARIGTCGFERTGMEVQIQDD-EGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGD  400 (528)
T ss_pred             ecchhhccccccccceeeccCcccCCcEEEEECC-CCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecce
Confidence            4322        1234578899999999999995 58899999999999999999999999999999887 489999999


Q ss_pred             eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHH
Q 011011          359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  434 (495)
Q Consensus       359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~  434 (495)
                      ++++++          +|++++.||.||+|++ +|++|+|.+||.++.++|.|.+|+|++.++.    ...+++++.++ 
T Consensus       401 l~~~~~----------~g~l~~~GR~dd~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~-  468 (528)
T PRK07470        401 LGHLDA----------RGFLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDG-  468 (528)
T ss_pred             eEEEcc----------CCeEEEeCCccceEEe-CCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCC-
Confidence            999998          8999999999999997 8999999999999999999999999998764    35567776542 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          435 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                     ...+.+++++++++.|+.++     .++++.++++.+.+.+||+
T Consensus       469 ---------------~~~~~~~~~~~l~~~l~~~~-----~P~~~~~~~~iP~t~~GKi  507 (528)
T PRK07470        469 ---------------APVDEAELLAWLDGKVARYK-----LPKRFFFWDALPKSGYGKI  507 (528)
T ss_pred             ---------------CCCCHHHHHHHHHHhhhcCC-----CCcEEEEeccCCCCCcccc
Confidence                           23567889999999999886     4578999999999999986

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=2.4e-44  Score=376.72  Aligned_cols=330  Identities=27%  Similarity=0.397  Sum_probs=268.6

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~--  131 (495)
                      ...++++++++|||||||.||+|++||+++............+.+++++++++|++|..+... .+.++..|+++++.  
T Consensus       169 ~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~  248 (517)
T PRK08008        169 PLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEK  248 (517)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccc
Confidence            346789999999999999999999999998765443333345778999999999999877665 45568889888875  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++++++|++.++|+++..+........                                            
T Consensus       249 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------------------------  284 (517)
T PRK08008        249 YSARAFWGQVCKYRATITECIPMMIRTLMVQPPSAN--------------------------------------------  284 (517)
T ss_pred             cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccc--------------------------------------------
Confidence             68889999999999999999999877654211000                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  289 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  289 (495)
                                                     .....++.+.+++ +++... ..+.+.+++++++.||+||++..+....
T Consensus       285 -------------------------------~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  332 (517)
T PRK08008        285 -------------------------------DRQHCLREVMFYL-NLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDR  332 (517)
T ss_pred             -------------------------------cccccceeeEEec-CCCHHHHHHHHHHhCCeEEeeccccccccccccCC
Confidence                                           0001124455544 566554 6666778999999999999976554333


Q ss_pred             C-CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc---CCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          290 P-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG---SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       290 ~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~---p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      + .....+++|.|+++++++++| +.+++++.|+.|||+++|   ++++.||+++++.+++.|..+|||+|||+|++++ 
T Consensus       333 ~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~-  410 (517)
T PRK08008        333 PGDKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE-  410 (517)
T ss_pred             ccccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECC-
Confidence            2 223456899999999999999 458899999999999997   6899999999999999998899999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~  441 (495)
                               +|++++.||.||+|+. +|++|+|.+||+++.+||.|.+++|+|.++    +.+.++|+++.+        
T Consensus       411 ---------~g~~~~~GR~~d~i~~-~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~--------  472 (517)
T PRK08008        411 ---------EGFFYFVDRRCNMIKR-GGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEG--------  472 (517)
T ss_pred             ---------CCcEEEeecccceEEe-CCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCC--------
Confidence                     8999999999999997 899999999999999999999999999864    357788887643        


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          442 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                              ...+.+++++++++.++.+.     .++.+.++++.+.+.+||+
T Consensus       473 --------~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t~~gK~  511 (517)
T PRK08008        473 --------ETLSEEEFFAFCEQNMAKFK-----VPSYLEIRKDLPRNCSGKI  511 (517)
T ss_pred             --------CCCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCCccce
Confidence                    34567889999999998886     4578999999999999986

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.2e-44  Score=373.90  Aligned_cols=332  Identities=32%  Similarity=0.554  Sum_probs=282.5

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      ....++++++++|||||||.||+|.+||+++..........+++.++|++++.+|++|.+++...+.++..|+++++.  
T Consensus       162 ~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~  241 (521)
T PRK06187        162 PDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMAGAKQVIPRR  241 (521)
T ss_pred             CCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHhCCEEEecCC
Confidence            356778999999999999999999999999988888777788899999999999999999998877799999999875  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++++++|.+.++|+++..+........                                            
T Consensus       242 ~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~--------------------------------------------  277 (521)
T PRK06187        242 FDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYF--------------------------------------------  277 (521)
T ss_pred             CCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCc--------------------------------------------
Confidence             58889999999999999999999988765422100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARR  289 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~  289 (495)
                                                     ..+..+|.+++||++++..+ +.+.+.+++++++.||+||++.++....
T Consensus       278 -------------------------------~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~  326 (521)
T PRK06187        278 -------------------------------VDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLP  326 (521)
T ss_pred             -------------------------------cCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCC
Confidence                                           11223488999999999987 4455567999999999999987666544


Q ss_pred             CCCC------CccccccCcCCcEEEEEeCCCCCcCCC--CCccEEEEccCCcchhccCCchhhhhccCCCCccccCceee
Q 011011          290 PTCN------VLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  361 (495)
Q Consensus       290 ~~~~------~~~~~G~p~~~~~v~i~d~~~~~~~~~--g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~  361 (495)
                      ....      ..+++|.|++++.++|+|++ +.+++.  |+.|||+++|+.++.||+++++.+.+.|. ++||+|||+++
T Consensus       327 ~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-~~~~~tGD~~~  404 (521)
T PRK06187        327 PEDQLPGQWTKRRSAGRPLPGVEARIVDDD-GDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID-GGWLHTGDVGY  404 (521)
T ss_pred             cccccccccccCCccccccCCeEEEEECCC-CCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhh-CCceeccceEE
Confidence            3332      56789999999999999965 678888  99999999999999999999999998885 67999999999


Q ss_pred             eccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHH
Q 011011          362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLM  437 (495)
Q Consensus       362 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~  437 (495)
                      +++          +|.+++.||.+|++++ +|.+++|.+||+.+.++|.|.+++|++.++    +.+.+++++.++    
T Consensus       405 ~~~----------~g~~~~~GR~~~~i~~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~----  469 (521)
T PRK06187        405 IDE----------DGYLYITDRIKDVIIS-GGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPG----  469 (521)
T ss_pred             EcC----------CCCEEEeecccceEEc-CCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCC----
Confidence            998          8999999999999997 899999999999999999999999998754    356777777543    


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          438 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                                  ...+.++++++++++|+.+.     .+.+|..+++.+.+.+||+.
T Consensus       470 ------------~~~~~~~l~~~l~~~l~~~~-----~p~~i~~v~~~P~t~~gK~~  509 (521)
T PRK06187        470 ------------ATLDAKELRAFLRGRLAKFK-----LPKRIAFVDELPRTSVGKIL  509 (521)
T ss_pred             ------------CCCCHHHHHHHHHHhccCCC-----CceEEEEccCCCCCCCCCee
Confidence                        33467889999988888875     55899999999999999873

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.9e-44  Score=380.39  Aligned_cols=338  Identities=25%  Similarity=0.355  Sum_probs=260.4

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---c
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---A  132 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---~  132 (495)
                      ..++|+++|+|||||||.||+|++||+++..........+.+...+++++.+|++|.+++...+.++..|+++++.   +
T Consensus       183 ~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~  262 (579)
T PLN03102        183 QDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVT  262 (579)
T ss_pred             CCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHHHHHhcCcEEeeccCC
Confidence            4578999999999999999999999999754443333344566778999999999999987767777778777653   5


Q ss_pred             hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHH
Q 011011          133 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  212 (495)
Q Consensus       133 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  212 (495)
                      +..+++.|+++++|++.++|+++..|++......                                              
T Consensus       263 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------------------------  296 (579)
T PLN03102        263 APEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL----------------------------------------------  296 (579)
T ss_pred             hHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc----------------------------------------------
Confidence            7889999999999999999999988865321100                                              


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCCC-
Q 011011          213 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPT-  291 (495)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-  291 (495)
                                                   ......+.+++||+++++.+..+++.+|.++++.||+||+++.+...... 
T Consensus       297 -----------------------------~~~~~~~~~~~gg~~~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~  347 (579)
T PLN03102        297 -----------------------------SPRSGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPVLFCEWQD  347 (579)
T ss_pred             -----------------------------CCcccceEEEECCCCCCHHHHHHHHHcCCeEEeecCccccCcccccccccc
Confidence                                         00112267889999999988777777899999999999987644321100 


Q ss_pred             -------C------CCccccccCcCCcEEEEEeCCCCCcCCC--CCccEEEEccCCcchhccCCchhhhhccCCCCcccc
Q 011011          292 -------C------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT  356 (495)
Q Consensus       292 -------~------~~~~~~G~p~~~~~v~i~d~~~~~~~~~--g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~T  356 (495)
                             .      ...+..+.+.+  .+++.|++.+++++.  ++.|||+++||+++.||+++|+.|++.|. +|||+|
T Consensus       348 ~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~-~gw~~T  424 (579)
T PLN03102        348 EWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFK-HGWLNT  424 (579)
T ss_pred             ccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhc-cCceec
Confidence                   0      01222233333  456677677777774  36899999999999999999999999985 799999


Q ss_pred             CceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecCh
Q 011011          357 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDK  432 (495)
Q Consensus       357 GDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~  432 (495)
                      ||+|++++          +|++++.||.||+|+. +|++|+|.+||+++.+||.|.+++|++.+++    .+.++|++..
T Consensus       425 GDlg~~d~----------dG~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~  493 (579)
T PLN03102        425 GDVGVIHP----------DGHVEIKDRSKDIIIS-GGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEK  493 (579)
T ss_pred             CceEEEcC----------CCeEEEEeccCcEEEE-CCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecC
Confidence            99999998          8999999999999997 8999999999999999999999999998764    5778888764


Q ss_pred             HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          433 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      +......+   +   .....+..+++++++++|+.|+     .+.+|.++++.+.+.+||+
T Consensus       494 ~~~~~~~~---~---~~~~~~~~~l~~~~~~~L~~~~-----~P~~i~~~~~~P~t~~gKi  543 (579)
T PLN03102        494 GETTKEDR---V---DKLVTRERDLIEYCRENLPHFM-----CPRKVVFLQELPKNGNGKI  543 (579)
T ss_pred             cccccccc---c---ccccccHHHHHHHHHhhccccc-----CCeEEEEcccCCCCCcccc
Confidence            31000000   0   0001135789999999999987     5588999999999999986

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-44  Score=374.36  Aligned_cols=330  Identities=25%  Similarity=0.384  Sum_probs=277.4

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHh-HhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~-~~~~G~~~~~~--  131 (495)
                      ....+++++++|||||||.||+|.+||+++..........+++.++|++++.+|++|.+++...+. .+..|+++++.  
T Consensus       167 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~  246 (523)
T PRK08316        167 ELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDA  246 (523)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecC
Confidence            457889999999999999999999999999887777767778899999999999999999866444 57888888875  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       +++.+++.++++++|++.++|+++..+++.....                                             
T Consensus       247 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  281 (523)
T PRK08316        247 PDPELILRTIEAERITSFFAPPTVWISLLRHPDFD---------------------------------------------  281 (523)
T ss_pred             CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccc---------------------------------------------
Confidence             6889999999999999999999987775431100                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccceecc
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                    ...+..+|.+++||+.++... +.+.+.+ +.++++.||+||++.+....
T Consensus       282 ------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  331 (523)
T PRK08316        282 ------------------------------TRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVL  331 (523)
T ss_pred             ------------------------------cCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCcccccc
Confidence                                          011233488999999999887 4555556 78999999999998776654


Q ss_pred             CCC--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCC
Q 011011          289 RPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  366 (495)
Q Consensus       289 ~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~  366 (495)
                      ...  ....+++|+|+++++++|+|+ .+++++.|+.|||+++|+.++.||+++++.+++.| .++||+|||+|++++  
T Consensus       332 ~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~--  407 (523)
T PRK08316        332 GPEEHLRRPGSAGRPVLNVETRVVDD-DGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDE--  407 (523)
T ss_pred             CccccccccCCcccCCCCcEEEEEcC-CCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcC--
Confidence            332  234578999999999999995 48899999999999999999999999999999988 589999999999998  


Q ss_pred             CCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHc
Q 011011          367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  442 (495)
Q Consensus       367 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~  442 (495)
                              +|.+++.||.||+|++ +|++|+|.+||+.+.++|.|.+++|++.+++    .+.++++++++         
T Consensus       408 --------~g~l~i~gR~~~~i~~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---------  469 (523)
T PRK08316        408 --------EGYITVVDRKKDMIKT-GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAG---------  469 (523)
T ss_pred             --------CceEEEecccccEEEe-CCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCC---------
Confidence                    8999999999999997 8999999999999999999999999998754    36678887643         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          443 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       443 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                             .....+++.++++++|+.++     .+.++.++++.+.+.+||+
T Consensus       470 -------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~p~t~~gKi  508 (523)
T PRK08316        470 -------ATVTEDELIAHCRARLAGFK-----VPKRVIFVDELPRNPSGKI  508 (523)
T ss_pred             -------CCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCCccce
Confidence                   23456788888888888775     5688999999999999986

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.9e-45  Score=340.39  Aligned_cols=333  Identities=21%  Similarity=0.333  Sum_probs=285.2

Q ss_pred             ccCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH--hHhHhhcCceEE
Q 011011           52 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELM  129 (495)
Q Consensus        52 ~~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~--~~~~~~~G~~~~  129 (495)
                      ++.+.+++++++..-+.||||.||.+..||.....++.......+++..+++++.+|+.|.+.+..  .++.+..|++++
T Consensus       182 ~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VV  261 (542)
T COG1021         182 PAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVV  261 (542)
T ss_pred             cCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEE
Confidence            345678899999999999999999999999999888888888889999999999999999998876  466689999999


Q ss_pred             ec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCc
Q 011011          130 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  206 (495)
Q Consensus       130 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  206 (495)
                      +.   ++......|+++++|+...+|.....+++..+..                                         
T Consensus       262 la~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~-----------------------------------------  300 (542)
T COG1021         262 LAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWE-----------------------------------------  300 (542)
T ss_pred             ECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcc-----------------------------------------
Confidence            84   6899999999999999999999888777754332                                         


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccce
Q 011011          207 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI  285 (495)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~  285 (495)
                                                        ...++++|.+-+||+.+++.. ++....+|+.+.+.|||.|.-...
T Consensus       301 ----------------------------------~~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvny  346 (542)
T COG1021         301 ----------------------------------RADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNY  346 (542)
T ss_pred             ----------------------------------cCCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcc
Confidence                                              134556699999999999987 555667899999999999975443


Q ss_pred             eccC-CCCCCccccccCc-CCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeec
Q 011011          286 AARR-PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  363 (495)
Q Consensus       286 ~~~~-~~~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~  363 (495)
                      +--. +...-..+-|+|+ |.-+++|+| +.|+++++|++|+|..+||..++|||+-|+.++.+|+.+|||+|||++.++
T Consensus       347 TRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~  425 (542)
T COG1021         347 TRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRD  425 (542)
T ss_pred             cccCCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEec
Confidence            3211 1112234568886 678899999 559999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCe----eEEEEecChHHHHHHH
Q 011011          364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAA  439 (495)
Q Consensus       364 ~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~----~~a~vv~~~~~~~~~~  439 (495)
                      +          +|++.+.||.||+|+- +|++|..+|||+.|..||.|.+|++|+.+|+.    .+|+||++.       
T Consensus       426 ~----------dGyl~V~GR~KDQINR-gGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~-------  487 (542)
T COG1021         426 P----------DGYLVVEGRVKDQINR-GGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKE-------  487 (542)
T ss_pred             C----------CceEEEEeeehhhhcc-ccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecC-------
Confidence            9          8999999999999995 99999999999999999999999999999854    558999875       


Q ss_pred             HHcCCCcCCccccChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          440 KRLSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       440 ~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                ......+++.++++. +..|+     .+.+|.+++..+.+.-||+
T Consensus       488 ----------~~~~~~qlr~~L~~~GlAa~K-----~PDrie~v~~~P~T~VGKI  527 (542)
T COG1021         488 ----------PPLRAAQLRRFLRERGLAAFK-----LPDRIEFVDSLPLTAVGKI  527 (542)
T ss_pred             ----------CCCCHHHHHHHHHHcchhhhc-----CCcceeecccCCCcccccc
Confidence                      346678888888876 77787     4489999999999888886

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=3e-44  Score=363.11  Aligned_cols=339  Identities=19%  Similarity=0.223  Sum_probs=281.0

Q ss_pred             ccCCCCCCCEEEEEeCCCCCCCchhhhhchHH-HHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEE
Q 011011           52 KYETIGSDDIATYVYTSGTTGNPKGVMLTHKN-LLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELM  129 (495)
Q Consensus        52 ~~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~-l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~  129 (495)
                      ++...+.+|+.+|+|||||||.||++.+|+.. ++..+.....+++++++|++++...+.|+.+..+ .+.++..|++++
T Consensus       232 ~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~v  311 (626)
T KOG1175|consen  232 PCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVV  311 (626)
T ss_pred             CceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEE
Confidence            45678899999999999999999999999987 5566677788899999999999999999999887 566899999998


Q ss_pred             ec-----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          130 YT-----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       130 ~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                      ++     ++..+++.+.++++|.++..|+.++.+.........                                     
T Consensus       312 l~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~-------------------------------------  354 (626)
T KOG1175|consen  312 LYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVT-------------------------------------  354 (626)
T ss_pred             EEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcccccc-------------------------------------
Confidence            84     578999999999999999999999877554222110                                     


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHcCC-eeeeccCcccCc
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGV-KVQVGYGLTESS  282 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~g~-~v~~~YG~TE~~  282 (495)
                                                          ...+..+|.+.++|+++.++.. .+.+.++. +|++.||+||+|
T Consensus       355 ------------------------------------~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG  398 (626)
T KOG1175|consen  355 ------------------------------------SYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETG  398 (626)
T ss_pred             ------------------------------------ccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccC
Confidence                                                0122345999999999988874 44556777 699999999999


Q ss_pred             cceeccCCCC--CCccccccCcCCcEEEEEeCCCCCcCCCC-CccEEEEccC---CcchhccCCchhhhhccCC--CCcc
Q 011011          283 PVIAARRPTC--NVLGSVGHPINHTEIKIVDAETNEVLPAG-SKGIVKVRGS---QVMQGYFKNPSATKQALDE--DGWL  354 (495)
Q Consensus       283 ~~~~~~~~~~--~~~~~~G~p~~~~~v~i~d~~~~~~~~~g-~~GEl~v~~p---~~~~gY~~~~~~t~~~~~~--~~~~  354 (495)
                      ..+.......  .++++.+.|.+++.+.|+|+ .|++++.+ +.|+|+++.+   +.+++||+|++....++..  .|+|
T Consensus       399 ~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de-~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y  477 (626)
T KOG1175|consen  399 GICITPKPGKLPIKPGSAGKPFPGYDVQILDE-NGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYY  477 (626)
T ss_pred             ceeeeccCCCCCcCccccCCCCCCcceEEECC-CCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceE
Confidence            9888776655  78899999999999999996 68888776 8999999874   7899999999977666544  7999


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEec
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  430 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~  430 (495)
                      .|||.+++|.          ||+++++||.||+|++ +|+++++.|||+++.+||.|.|++|||.+++    .+.|||++
T Consensus       478 ~tGD~~~rd~----------dGY~~i~GR~DDviNv-sGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl  546 (626)
T KOG1175|consen  478 FTGDGGRRDE----------DGYYWILGRVDDVINV-SGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVL  546 (626)
T ss_pred             EecCceEEcC----------CceEEEEecccccccc-cceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEE
Confidence            9999999998          8999999999999998 8999999999999999999999999999864    56699998


Q ss_pred             ChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          431 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      +++                 ..+.++|.+.|+..++.-..|. ..+++|.++++.+.+-+||+
T Consensus       547 ~~g-----------------~~~~~~L~kel~~~VR~~igp~-a~P~~I~~v~~LPkTrSGKi  591 (626)
T KOG1175|consen  547 KSG-----------------SHDPEQLTKELVKHVRSVIGPY-AVPRLIVFVPGLPKTRSGKI  591 (626)
T ss_pred             cCC-----------------CCChHHHHHHHHHHHHhhcCcc-cccceeEecCCCCccccchh
Confidence            764                 2234445555555555444443 26699999999999999986

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=6.7e-44  Score=375.87  Aligned_cols=333  Identities=28%  Similarity=0.392  Sum_probs=274.6

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHh-HhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~~--  131 (495)
                      ...++|+++|+|||||||.||+|++||+++......+...+++.++|++++++|++|.+++... +.++..|+++++.  
T Consensus       183 ~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~  262 (547)
T PRK06087        183 TTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDI  262 (547)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCC
Confidence            3567899999999999999999999999998877777777788999999999999999997654 4557888888874  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.+++++++.+.++|..+..++......                                             
T Consensus       263 ~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~---------------------------------------------  297 (547)
T PRK06087        263 FTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ---------------------------------------------  297 (547)
T ss_pred             CCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC---------------------------------------------
Confidence             5788999999999999999888776665431110                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                    ...+..+|.+++||+++++.+.+....+|+++++.||+||++........
T Consensus       298 ------------------------------~~~~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~  347 (547)
T PRK06087        298 ------------------------------PADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLD  347 (547)
T ss_pred             ------------------------------CCCCCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEecccccCCccccCCC
Confidence                                          01223458999999999999866666679999999999999876654433


Q ss_pred             CC--CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011          291 TC--NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  368 (495)
Q Consensus       291 ~~--~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~  368 (495)
                      .+  ...+++|.|++++.++++| +.+++++.|+.|||+++|+.++.||+++++.+...|..++||+|||++++++    
T Consensus       348 ~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----  422 (547)
T PRK06087        348 DPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDE----  422 (547)
T ss_pred             cchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECC----
Confidence            22  2345789999999999999 5578899999999999999999999999999999998889999999999998    


Q ss_pred             CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011          369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  444 (495)
Q Consensus       369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  444 (495)
                            +|+++++||.+|+|+. +|++|+|.+||+++.++|.|.+++|++.+++    ++.+++++...           
T Consensus       423 ------~g~l~i~GR~~d~i~~-~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-----------  484 (547)
T PRK06087        423 ------AGYIKITGRKKDIIVR-GGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAP-----------  484 (547)
T ss_pred             ------CCCEEEEecchhhhhc-CCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCC-----------
Confidence                  8999999999999996 8999999999999999999999999998643    46677776531           


Q ss_pred             CcCCccccChHHHHHHHH-HHHHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          445 VHADASELSKEKTISLLY-GELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                          ....+.+++.+++. +.++.++     .+.+|.++++.+.+.+||+.
T Consensus       485 ----~~~~~~~~~~~~~~~~~l~~~~-----~P~~i~~v~~iP~t~sGK~~  526 (547)
T PRK06087        485 ----HHSLTLEEVVAFFSRKRVAKYK-----YPEHIVVIDKLPRTASGKIQ  526 (547)
T ss_pred             ----CCCCCHHHHHHHHHhccccccC-----CCeEEEEeccCCCCCCCcCc
Confidence                12234566666664 3566554     66899999999999999863

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.6e-44  Score=373.56  Aligned_cols=327  Identities=24%  Similarity=0.287  Sum_probs=276.9

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---ch
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AV  133 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---~~  133 (495)
                      .++++++++|||||||.||+|++||+++..........+++..+|++++.+|++|.+++. .+..+..|+++++.   ++
T Consensus       166 ~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G~~~~~~~~~~~  244 (524)
T PRK06188        166 LPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRGGTVIVLAKFDP  244 (524)
T ss_pred             CCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcCCEEEEcCCCCH
Confidence            456799999999999999999999999998888877788889999999999999998875 45668889998874   68


Q ss_pred             HhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHH
Q 011011          134 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  213 (495)
Q Consensus       134 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  213 (495)
                      ..+++.+++++++++.++|+++..+++......                                               
T Consensus       245 ~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-----------------------------------------------  277 (524)
T PRK06188        245 AEVLRAIEEQRITATFLVPTMIYALLDHPDLRT-----------------------------------------------  277 (524)
T ss_pred             HHHHHHHHHhCCEEEEehHHHHHHHHhCcCccC-----------------------------------------------
Confidence            899999999999999999999988765321100                                               


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccCCC-
Q 011011          214 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPT-  291 (495)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-  291 (495)
                                                  ..+..+|.+++||+++++.. ..+.+.++..+++.||+||++..+...... 
T Consensus       278 ----------------------------~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~  329 (524)
T PRK06188        278 ----------------------------RDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRD  329 (524)
T ss_pred             ----------------------------CCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchh
Confidence                                        11234588999999999875 667778898899999999997655543321 


Q ss_pred             -----CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCC
Q 011011          292 -----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  366 (495)
Q Consensus       292 -----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~  366 (495)
                           ....+++|+|++++.++|+|++ +++++.|+.|||+++|+.++.||+++++.+...| .+|||+|||++++++  
T Consensus       330 ~~~~~~~~~~~~G~p~~g~~v~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~--  405 (524)
T PRK06188        330 HDPDDPKRLTSCGRPTPGLRVALLDED-GREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDE--  405 (524)
T ss_pred             ccccccccCCccccccCCcEEEEEcCC-CCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcC--
Confidence                 2345689999999999999965 8899999999999999999999999999999888 589999999999998  


Q ss_pred             CCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHc
Q 011011          367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  442 (495)
Q Consensus       367 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~  442 (495)
                              +|++++.||.+|+|++ +|++|+|.+||++|.+||.|.+++|++.+++    .+.++++++++         
T Consensus       406 --------~g~~~~~GR~~~~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~---------  467 (524)
T PRK06188        406 --------DGFYYIVDRKKDMIVT-GGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPG---------  467 (524)
T ss_pred             --------CccEEEEeccccceec-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCC---------
Confidence                    8999999999999997 8999999999999999999999999997653    56788887643         


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          443 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       443 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                             ...+.+++++++++.++.++     .+.+|.++++.+.+.+||+
T Consensus       468 -------~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~~P~t~~gKi  506 (524)
T PRK06188        468 -------AAVDAAELQAHVKERKGSVH-----APKQVDFVDSLPLTALGKP  506 (524)
T ss_pred             -------CCCCHHHHHHHHHHhcccCC-----CCcEEEEecCCCCCccccc
Confidence                   33456789999999888876     5588999999999999986

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=7.1e-44  Score=439.39  Aligned_cols=335  Identities=20%  Similarity=0.260  Sum_probs=282.3

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      ....+++++||+|||||||.||||+++|+++.+.+..+...+++.++|+++++.|++|..+....+.++..|+++++.  
T Consensus       651 ~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lv~~~~  730 (3956)
T PRK12467        651 VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPP  730 (3956)
T ss_pred             CCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhcCCCCCCEEEEecCccHhHHHHHHHHHHhCCCEEEEcCc
Confidence            356789999999999999999999999999999888888888999999999999999999988888899999999874  


Q ss_pred             ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                          ++..+++.|+++++|++.++|+++..++.....                                           
T Consensus       731 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-------------------------------------------  767 (3956)
T PRK12467        731 DCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRV-------------------------------------------  767 (3956)
T ss_pred             cccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhcc-------------------------------------------
Confidence                467899999999999999999999887653111                                           


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccce
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI  285 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~  285 (495)
                                                        .....+|.+++||+++++.+ +.+.+.+ +++++|.||+||++..+
T Consensus       768 ----------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  813 (3956)
T PRK12467        768 ----------------------------------ALPRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGV  813 (3956)
T ss_pred             ----------------------------------ccCCcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhhe
Confidence                                              01112388999999999987 4555554 68999999999998766


Q ss_pred             eccCCCCC----CccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC-------CCcc
Q 011011          286 AARRPTCN----VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-------DGWL  354 (495)
Q Consensus       286 ~~~~~~~~----~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~-------~~~~  354 (495)
                      +.......    ...++|+|++++.++|+|+ .++++|.|+.|||+|+|+++++||+++|+.|++.|..       ++||
T Consensus       814 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~y  892 (3956)
T PRK12467        814 STYELSDEERDFGNVPIGQPLANLGLYILDH-YLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLY  892 (3956)
T ss_pred             eeEecccccccCCCCcccCCcCCCEEEEECC-CCCCCCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeE
Confidence            54332211    2356999999999999995 5789999999999999999999999999999999843       3499


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC---CeeEEEEecC
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPD  431 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~---~~~~a~vv~~  431 (495)
                      +|||+|++++          ||.++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++   ..++|++++.
T Consensus       893 rTGDl~~~~~----------dG~l~~~GR~d~~vki-~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~vv~~  961 (3956)
T PRK12467        893 RTGDLARYRA----------DGVIEYLGRMDHQVKI-RGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPA  961 (3956)
T ss_pred             ecCceeEEcC----------CCcEEEeccccCeEEE-CCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEEEec
Confidence            9999999998          8999999999999998 899999999999999999999999998543   4688999865


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          432 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ...           .........+++++++++.|+.|+.|     ..|.++++.+.+.|||+
T Consensus       962 ~~~-----------~~~~~~~~~~~l~~~l~~~Lp~y~vP-----~~~~~l~~lP~t~~GKi 1007 (3956)
T PRK12467        962 AVA-----------DGAEHQATRDELKAQLRQVLPDYMVP-----AHLLLLDSLPLTPNGKL 1007 (3956)
T ss_pred             ccc-----------cccccccCHHHHHHHHHhhCchhcCC-----ceEeeecccCCCCCCCc
Confidence            320           00112345688999999999999855     78999999999999997

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.8e-44  Score=447.53  Aligned_cols=329  Identities=21%  Similarity=0.276  Sum_probs=285.0

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      ....+++++||+|||||||+||||+++|+++.+.+..+...++++++|+++++.|+.|..+....+.++..|+++++.  
T Consensus      3191 ~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~~~~~i~~~L~~G~~l~~~~~ 3270 (5163)
T PRK12316       3191 IRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVLAGP 3270 (5163)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEEEeecCccHHHHHHHHHHHHhCCCEEEEcCh
Confidence            356789999999999999999999999999999888888888999999999999999998887788899999999985  


Q ss_pred             ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                          ++..+.+.+++.+++++..+|+++..+......                                           
T Consensus      3271 ~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~~~------------------------------------------- 3307 (5163)
T PRK12316       3271 EDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDA------------------------------------------- 3307 (5163)
T ss_pred             hhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcccc-------------------------------------------
Confidence                467788999999999999999998776542100                                           


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceec
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                        ..+..+|.+++||+++++++.+.+. .+.+++|.||+||++..++.
T Consensus      3308 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~-~~~~l~n~YG~TE~~~~~~~ 3352 (5163)
T PRK12316       3308 ----------------------------------HRCTSLKRIVCGGEALPADLQQQVF-AGLPLYNLYGPTEATITVTH 3352 (5163)
T ss_pred             ----------------------------------ccCCcceEEEEccccCCHHHHHHHH-hCCcEeeccCCCccEeeEeE
Confidence                                              1123358999999999998754444 57889999999999877664


Q ss_pred             cCC--CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCC------CccccCce
Q 011011          288 RRP--TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED------GWLNTGDI  359 (495)
Q Consensus       288 ~~~--~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~------~~~~TGDl  359 (495)
                      ...  ......++|+|++++.++|+| +.++++|.|++|||+|.|+.+++||+|+|++|+++|..+      +||+|||+
T Consensus      3353 ~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGDl 3431 (5163)
T PRK12316       3353 WQCVEEGKDAVPIGRPIANRACYILD-GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDL 3431 (5163)
T ss_pred             EeccCCCCCCCccceecCCCEEEEEC-CCCCCCCCCCCceEEecccccchhcCCChhhchhhCCCCCCCCCCeeEecCce
Confidence            332  223457899999999999999 568999999999999999999999999999999999543      69999999


Q ss_pred             eeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCeeEEEEecChHHHHHHH
Q 011011          360 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAA  439 (495)
Q Consensus       360 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~~~a~vv~~~~~~~~~~  439 (495)
                      |++++          ||.++|+||+|++||+ +|++|+|.|||++|.+||.|.+|+|++.+.++++|+|++..+      
T Consensus      3432 ~~~~~----------dG~l~~~GR~d~qvKi-~G~rIel~eIE~~l~~~~~V~~a~v~~~~~~~l~a~vv~~~~------ 3494 (5163)
T PRK12316       3432 ARYRA----------DGVIEYIGRVDHQVKI-RGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVVPEDE------ 3494 (5163)
T ss_pred             EEECC----------CCCEEEecccCCeEee-CcEeeChHHHHHHHHhCCCcceEEEEEccCCeEEEEEEcCCc------
Confidence            99998          8999999999999998 999999999999999999999999999887889999998643      


Q ss_pred             HHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          440 KRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       440 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                .....+++++++++.|+.|+.|     ..|..+++.+.+.|||+
T Consensus      3495 ----------~~~~~~~l~~~l~~~Lp~ymvP-----~~~~~~~~lP~t~~GKv 3533 (5163)
T PRK12316       3495 ----------AGDLREALKAHLKASLPEYMVP-----AHLLFLERMPLTPNGKL 3533 (5163)
T ss_pred             ----------CcccHHHHHHHHHhhCCcccCc-----ceeeeHhhcCCCCCcch
Confidence                      2234578999999999999855     78999999999999986

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.7e-43  Score=380.75  Aligned_cols=333  Identities=16%  Similarity=0.124  Sum_probs=260.9

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecc---
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---  132 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~---  132 (495)
                      .+++++++|+|||||||.||||+++|++++.........++++++|+++++.|+.|+++....+.++..|+++++++   
T Consensus       353 ~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p  432 (728)
T PLN03052        353 QPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSP  432 (728)
T ss_pred             cCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCC
Confidence            36799999999999999999999999998766555555578899999999999999999866678899999998752   


Q ss_pred             -hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHH
Q 011011          133 -VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  211 (495)
Q Consensus       133 -~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  211 (495)
                       +..+++.++++++|++..+|+++..+.+.....                                              
T Consensus       433 ~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~----------------------------------------------  466 (728)
T PLN03052        433 LGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMA----------------------------------------------  466 (728)
T ss_pred             CCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcc----------------------------------------------
Confidence             467999999999999999999988765421000                                              


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHH-HHcC-CeeeeccCcccCccceecc-
Q 011011          212 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIG-VKVQVGYGLTESSPVIAAR-  288 (495)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~-~~~g-~~v~~~YG~TE~~~~~~~~-  288 (495)
                                                   ...++.+|.+++||++++++...+. +.++ .++++.||+||++..+... 
T Consensus       467 -----------------------------~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~  517 (728)
T PLN03052        467 -----------------------------GLDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGS  517 (728)
T ss_pred             -----------------------------cCChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCC
Confidence                                         0122345899999999998875444 4455 5799999999987644322 


Q ss_pred             CCCCCCccccccCcCCcEEEEEeCCCCCcCCCCC--ccEEEEccC--CcchhccCCchhhhhccC------CCCccccCc
Q 011011          289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGS--KGIVKVRGS--QVMQGYFKNPSATKQALD------EDGWLNTGD  358 (495)
Q Consensus       289 ~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~--~GEl~v~~p--~~~~gY~~~~~~t~~~~~------~~~~~~TGD  358 (495)
                      +......+++|.|.+|++++|+| +.|++++.|+  .|||+++++  ....+|+++. .+...|.      ..+||+|||
T Consensus       518 ~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGD  595 (728)
T PLN03052        518 LLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGD  595 (728)
T ss_pred             CCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCc
Confidence            22234567899999999999999 5688999985  699999764  3345677764 3333331      223899999


Q ss_pred             eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHh-cCcccceEEEEecCC-----CeeEEEEecC-
Q 011011          359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAAL-RSSLIRQIVVIGQDQ-----RRPGAIIVPD-  431 (495)
Q Consensus       359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~-~~p~V~~~~vvg~~~-----~~~~a~vv~~-  431 (495)
                      ++++++          +|+++|+||.||+|++ +|++|+|.|||++|. .||.|.+++|+|.++     +.+.++||++ 
T Consensus       596 l~~~d~----------dG~l~i~GR~Dd~I~~-~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~  664 (728)
T PLN03052        596 IFERTS----------GGYYRAHGRADDTMNL-GGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKD  664 (728)
T ss_pred             eEEECC----------CCeEEEEecCCCEEee-CCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEec
Confidence            999999          8999999999999998 899999999999995 799999999999854     4577888876 


Q ss_pred             -hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          432 -KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       432 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                       ++                ...+.++|++.+++.|++...+. ..+++|.++++.|.+.|||+
T Consensus       665 ~~g----------------~~~~~~~L~~~i~~~i~~~l~~~-~~p~~i~~v~~lP~T~sGKi  710 (728)
T PLN03052        665 PPG----------------SNPDLNELKKIFNSAIQKKLNPL-FKVSAVVIVPSFPRTASNKV  710 (728)
T ss_pred             CCC----------------CCCCHHHHHHHHHHHHHhhcCCc-cCCCEEEEcCCCCCCCchHH
Confidence             22                23455778888887777654443 35689999999999999986

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.8e-43  Score=372.43  Aligned_cols=329  Identities=31%  Similarity=0.476  Sum_probs=267.6

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHH-hhcccCCCC-CcEEEEECChhhHHHHHHh-HhHhhcCceEEec--
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS-LYDIVPAEN-GDKFLSMLPPWHVYERACG-YFIFSRGIELMYT--  131 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~-~~~~~~~~~-~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~~--  131 (495)
                      .++++++++|||||||.||+|++||+++...... ....++... ++++++++|++|.+++... ..++..|+++++.  
T Consensus       204 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  283 (563)
T PRK06710        204 PENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK  283 (563)
T ss_pred             CCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC
Confidence            4589999999999999999999999998754332 222234433 4688999999999988653 4467888888774  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++++++|++.++|+++..+........                                            
T Consensus       284 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------------------------------  319 (563)
T PRK06710        284 FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKE--------------------------------------------  319 (563)
T ss_pred             CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCcccc--------------------------------------------
Confidence             67889999999999999999999987754210000                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHH-HHHcCCeeeeccCcccCccceeccC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARR  289 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~~  289 (495)
                                                     ..+..+|.+++||+++++.+..+ .+.++.++++.||+||++.......
T Consensus       320 -------------------------------~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  368 (563)
T PRK06710        320 -------------------------------YDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNF  368 (563)
T ss_pred             -------------------------------CChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCc
Confidence                                           01112378899999999988544 4557899999999999987544322


Q ss_pred             C-CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011          290 P-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  368 (495)
Q Consensus       290 ~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~  368 (495)
                      . ....++++|.|.+++.++++|++++++++.|+.|||+++|+.++.||+++++.+...| .+|||+|||++++++    
T Consensus       369 ~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~----  443 (563)
T PRK06710        369 LWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDE----  443 (563)
T ss_pred             ccccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcC----
Confidence            1 2234578999999999999998889999999999999999999999999999999888 489999999999998    


Q ss_pred             CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHcCC
Q 011011          369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSI  444 (495)
Q Consensus       369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~  444 (495)
                            +|.++++||.||+|++ +|.+|+|.+||+++.+||.|.+++|++.++    ..+.++++..++           
T Consensus       444 ------~g~~~~~GR~dd~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-----------  505 (563)
T PRK06710        444 ------DGFFYVKDRKKDMIVA-SGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEG-----------  505 (563)
T ss_pred             ------CCcEEEeeccccEEEE-CCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCC-----------
Confidence                  8999999999999998 899999999999999999999999999865    346677776543           


Q ss_pred             CcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          445 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                           ...+.+++++++++.|+.++     .++.|.++++.+.+.+||+
T Consensus       506 -----~~~~~~~l~~~~~~~l~~~~-----~P~~~~~v~~iP~t~~GKi  544 (563)
T PRK06710        506 -----TECSEEELNQFARKYLAAYK-----VPKVYEFRDELPKTTVGKI  544 (563)
T ss_pred             -----CCCCHHHHHHHHHHhccccc-----CCcEEEEcccCCCCccchh
Confidence                 33457789999998888876     4478999999999999986

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=3.8e-43  Score=366.86  Aligned_cols=334  Identities=22%  Similarity=0.340  Sum_probs=273.6

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHH-hhcccCCCCCcEEEEECChhhHHHHHHh-HhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS-LYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~~~-  131 (495)
                      ...++++++++|||||||.||+|++||+++...+.. ....++++++|++++.+|++|.+++... +.++..|+++++. 
T Consensus       157 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  236 (508)
T TIGR02262       157 ATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMG  236 (508)
T ss_pred             CCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeC
Confidence            456789999999999999999999999999876655 4455678899999999999999998653 4457888888764 


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.+++++|+++.++|.++..+.......                                           
T Consensus       237 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~-------------------------------------------  273 (508)
T TIGR02262       237 ERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLP-------------------------------------------  273 (508)
T ss_pred             CCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccc-------------------------------------------
Confidence               5789999999999999999999887654320000                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                      ......+|.+++||+++++++ +.+.+.+++++++.||+||++.....
T Consensus       274 --------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~  321 (508)
T TIGR02262       274 --------------------------------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLS  321 (508)
T ss_pred             --------------------------------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeec
Confidence                                            001123488899999999887 55566789999999999999876654


Q ss_pred             cCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCC
Q 011011          288 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  367 (495)
Q Consensus       288 ~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~  367 (495)
                      ........+++|.|++++.++++| +++.++++|+.|||+++|+.++.||+++++.+++.| .++||+|||++++++   
T Consensus       322 ~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~---  396 (508)
T TIGR02262       322 NLPGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRND---  396 (508)
T ss_pred             CCccCCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcC---
Confidence            443334567899999999999999 778999999999999999999999999999999888 478999999999988   


Q ss_pred             CCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHcC
Q 011011          368 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLS  443 (495)
Q Consensus       368 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~~  443 (495)
                             +|.+++.||.||+|++ +|.+|+|.+||+++.++|.|.++++++.++    ..+.+++++.+..         
T Consensus       397 -------~g~~~~~gR~~d~i~~-~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~---------  459 (508)
T TIGR02262       397 -------DGSYTYAGRTDDMLKV-SGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQ---------  459 (508)
T ss_pred             -------CccEEEeccccceeee-CCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCC---------
Confidence                   8999999999999998 799999999999999999999999999754    3456777765430         


Q ss_pred             CCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          444 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       444 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                          .......+++++++++.|+.++     .++.+..+++.+.+.+||+.
T Consensus       460 ----~~~~~~~~~i~~~~~~~l~~~~-----~p~~i~~~~~iP~t~~gKi~  501 (508)
T TIGR02262       460 ----DIDTALETELKEHVKDRLAPYK-----YPRWIVFVDDLPKTATGKIQ  501 (508)
T ss_pred             ----ccccccHHHHHHHHHHhcccCC-----CCceEEEecCCCCCCCCcEe
Confidence                0112345778888888888876     44788889999999999873

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-43  Score=370.73  Aligned_cols=327  Identities=21%  Similarity=0.324  Sum_probs=258.5

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHh-HhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~-~~~~G~~~~~~--  131 (495)
                      ...++++++++|||||||.||||+++|+++..........+++.++|++++.+|++|.+++...+. ++..|+++++.  
T Consensus       146 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~  225 (540)
T PRK13388        146 EVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAK  225 (540)
T ss_pred             CCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCC
Confidence            357899999999999999999999999999887777777788999999999999999998876554 58889998874  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.+++++++++..+|..+..+......    ..                                        
T Consensus       226 ~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~----~~----------------------------------------  261 (540)
T PRK13388        226 FSASGFLDDVRRYGATYFNYVGKPLAYILATPER----PD----------------------------------------  261 (540)
T ss_pred             CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC----cc----------------------------------------
Confidence             578899999999999999999887666432100    00                                        


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                     .....++. .+||+..+.....+.+.++.++++.||+||++.++.... 
T Consensus       262 -------------------------------~~~~~l~~-~~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~-  308 (540)
T PRK13388        262 -------------------------------DADNPLRV-AFGNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP-  308 (540)
T ss_pred             -------------------------------ccccceEE-EECCCCCHHHHHHHHHHhCCceecccccccccceeecCC-
Confidence                                           00011243 345554444457777788999999999999987665322 


Q ss_pred             CCCCccccccCcCCcEEE-----------EEeCCCCCcC-CCCCccEEEEc-cCCcchhccCCchhhhhccCCCCccccC
Q 011011          291 TCNVLGSVGHPINHTEIK-----------IVDAETNEVL-PAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTG  357 (495)
Q Consensus       291 ~~~~~~~~G~p~~~~~v~-----------i~d~~~~~~~-~~g~~GEl~v~-~p~~~~gY~~~~~~t~~~~~~~~~~~TG  357 (495)
                       ....+++|.|++++.+.           ++| +.|+++ ++++.|||+++ |++++.||+++|+.+++.| .+|||+||
T Consensus       309 -~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TG  385 (540)
T PRK13388        309 -GTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSG  385 (540)
T ss_pred             -CCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceecc
Confidence             23457899999996642           233 234444 45679999998 9999999999999999988 47899999


Q ss_pred             ceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChH
Q 011011          358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE  433 (495)
Q Consensus       358 Dl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~  433 (495)
                      |+|++++          +|++++.||.||+|++ +|++|+|.+||+++.+||.|.+|+|++.+++    .+.+++++.++
T Consensus       386 D~~~~~~----------dg~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~  454 (540)
T PRK13388        386 DLAYRDA----------DGWIYFAGRTADWMRV-DGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDG  454 (540)
T ss_pred             ceEEEcC----------CCcEEEeccCCceEEE-CCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCC
Confidence            9999998          8999999999999998 8999999999999999999999999998754    45566666542


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHH--HHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          434 EVLMAAKRLSIVHADASELSKEKTISLLYGE--LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                      ...+.++++++++.+  |+.++     .++.+.++++.+.+.+||+
T Consensus       455 ----------------~~~~~~~l~~~l~~~~~l~~~~-----~P~~~~~v~~iP~t~~GKv  495 (540)
T PRK13388        455 ----------------ATFDPDAFAAFLAAQPDLGTKA-----WPRYVRIAADLPSTATNKV  495 (540)
T ss_pred             ----------------CcCCHHHHHHHHHhhccCCccc-----CCcEEEEeccCCCCCccee
Confidence                            334567788888653  66665     5578899999999999987

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.5e-43  Score=370.31  Aligned_cols=331  Identities=26%  Similarity=0.451  Sum_probs=265.5

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhccc----CCC---CCcEEEEECChhhHHHHHH-hHhHhhcC
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV----PAE---NGDKFLSMLPPWHVYERAC-GYFIFSRG  125 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~----~~~---~~d~~l~~~p~~h~~~~~~-~~~~~~~G  125 (495)
                      ....++++++|+|||||||.||+|+++|+++...+......+    ...   ..+.+++.+|++|.+++.. .+.++..|
T Consensus       199 ~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g  278 (557)
T PRK07059        199 VKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTG  278 (557)
T ss_pred             CCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhc
Confidence            345789999999999999999999999999876544322211    111   2357788999999998754 34456666


Q ss_pred             ceEEec----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhcccccc
Q 011011          126 IELMYT----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTR  201 (495)
Q Consensus       126 ~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (495)
                      ++.++.    ++..+++.+++++++.+.++|+++..+.......                                    
T Consensus       279 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~------------------------------------  322 (557)
T PRK07059        279 GRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFD------------------------------------  322 (557)
T ss_pred             ceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcC------------------------------------
Confidence            665542    5678899999999999999999998775421100                                    


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCccc
Q 011011          202 NQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTE  280 (495)
Q Consensus       202 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE  280 (495)
                                                             ...+..++.++.||+++++.+ +.+.+.+++++++.||+||
T Consensus       323 ---------------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE  363 (557)
T PRK07059        323 ---------------------------------------KLDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSE  363 (557)
T ss_pred             ---------------------------------------cCCchhheEEEeccccCCHHHHHHHHHHhCCCeeecccccc
Confidence                                                   001122378899999998887 5566678999999999999


Q ss_pred             CccceeccCCC-CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCce
Q 011011          281 SSPVIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  359 (495)
Q Consensus       281 ~~~~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl  359 (495)
                      ++.+++..... ....+++|.|+++++++++|+ .++++|.|+.|||+++|+.++.||+++++.+++.|..+|||+|||+
T Consensus       364 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~-~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl  442 (557)
T PRK07059        364 TSPVATCNPVDATEFSGTIGLPLPSTEVSIRDD-DGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDV  442 (557)
T ss_pred             ccchhhcCCCCCCCcCCcccCccCCcEEEEECC-CCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcE
Confidence            98776544332 234578999999999999994 5889999999999999999999999999999998988999999999


Q ss_pred             eeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHH
Q 011011          360 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  435 (495)
Q Consensus       360 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~  435 (495)
                      +++++          +|++++.||++|+|+. +|++|+|.+||+++.+||.|.+++|++.++.    .+.++++...   
T Consensus       443 ~~~~~----------~g~~~~~GR~~~~i~~-~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~---  508 (557)
T PRK07059        443 GVMDE----------RGYTKIVDRKKDMILV-SGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD---  508 (557)
T ss_pred             EEEcC----------CCcEEEecccccceEE-CCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC---
Confidence            99998          8999999999999998 8999999999999999999999999987653    4556666432   


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          436 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                    ...+.+++.+++++.++.+.     .+.++.++++.+.+.+||+
T Consensus       509 --------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~~P~t~~GK~  547 (557)
T PRK07059        509 --------------PALTEEDVKAFCKERLTNYK-----RPKFVEFRTELPKTNVGKI  547 (557)
T ss_pred             --------------CCCCHHHHHHHHHHhccccc-----CCcEEEEeccCCCCcccce
Confidence                          23456789999999998886     4588999999999999987

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=2.3e-42  Score=363.65  Aligned_cols=332  Identities=27%  Similarity=0.433  Sum_probs=267.3

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc-----ccCCCCCcEEEEECChhhHHHHHHh-HhHhhcCceE
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-----IVPAENGDKFLSMLPPWHVYERACG-YFIFSRGIEL  128 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~  128 (495)
                      ...++++++++|||||||.||+|++||+++.........     .......+++++.+|++|.+++... +.++..|.++
T Consensus       188 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~  267 (541)
T TIGR03205       188 AVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLI  267 (541)
T ss_pred             CCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEE
Confidence            456899999999999999999999999998764432211     1122345789999999999988764 4567888887


Q ss_pred             Eec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011          129 MYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  205 (495)
Q Consensus       129 ~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (495)
                      +..   ++..+++.|+++++|++.++|+++..+++.....                                        
T Consensus       268 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------------------  307 (541)
T TIGR03205       268 SLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLE----------------------------------------  307 (541)
T ss_pred             EecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcccc----------------------------------------
Confidence            764   6889999999999999999999987765421000                                        


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHH-HHcCCeeeeccCcccCccc
Q 011011          206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPV  284 (495)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~~  284 (495)
                                                         ...+..++.++.||+++++.+..++ +.++.++++.||+||++..
T Consensus       308 -----------------------------------~~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~  352 (541)
T TIGR03205       308 -----------------------------------KRDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSP  352 (541)
T ss_pred             -----------------------------------ccCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcc
Confidence                                               0111234889999999999885544 5579999999999999876


Q ss_pred             eeccCCC-CCCccccccCcCCcEEEEEe-CCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeee
Q 011011          285 IAARRPT-CNVLGSVGHPINHTEIKIVD-AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  362 (495)
Q Consensus       285 ~~~~~~~-~~~~~~~G~p~~~~~v~i~d-~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~  362 (495)
                      ++..... ...++++|.|++++.+++.+ .+.+++++.|+.|||+++|++++.||+++++.+++.|. ++||+|||++++
T Consensus       353 ~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~-~~~~~TGD~~~~  431 (541)
T TIGR03205       353 GTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV-GDRFLTGDIGYM  431 (541)
T ss_pred             cccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhc-cCCcccCceEEE
Confidence            6544322 23457899999999998875 25678899999999999999999999999999999885 789999999999


Q ss_pred             ccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHH
Q 011011          363 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  438 (495)
Q Consensus       363 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~  438 (495)
                      ++          +|+++++||.||+|+. +|++|+|.+||+++.+||.|.+++|++.+++    .+.+++++..+     
T Consensus       432 ~~----------~g~l~i~GR~~~~i~~-~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-----  495 (541)
T TIGR03205       432 DT----------DGYFFLVDRKKDMIIS-GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPG-----  495 (541)
T ss_pred             cC----------CceEEEEccccCeEEE-CCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCC-----
Confidence            98          8999999999999997 8999999999999999999999999998643    46677776542     


Q ss_pred             HHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          439 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                ....+.++++++++++|+.++     .+++|.++++.+...+||+
T Consensus       496 ----------~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~iP~t~~gK~  535 (541)
T TIGR03205       496 ----------AKPFSLDELRAFLAGKLGKHE-----LPVAVEFVDELPRTPVGKL  535 (541)
T ss_pred             ----------CCcCCHHHHHHHHHhhccccc-----CCcEEEEeccCCCCcccce
Confidence                      112456789999999998886     5589999999999999986

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.4e-43  Score=366.56  Aligned_cols=331  Identities=21%  Similarity=0.264  Sum_probs=261.2

Q ss_pred             CCEEEEEeCCCCCCCchhhhh--chHHHHHHH----HHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec-
Q 011011           59 DDIATYVYTSGTTGNPKGVML--THKNLLHQI----RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  131 (495)
Q Consensus        59 ~d~a~i~~TSGTTG~PK~v~~--th~~l~~~~----~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-  131 (495)
                      +++++|+|||||||.||||++  +|.++....    ......+.+..+|++++.+|++|.+++......+..|+++++. 
T Consensus       148 ~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~  227 (501)
T PRK13390        148 PCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAK  227 (501)
T ss_pred             cccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcC
Confidence            357999999999999999995  455543321    1123346678899999999999999886655556778888774 


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..+++.++++++|.+.++|+++..+.........                                          
T Consensus       228 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------------------------  265 (501)
T PRK13390        228 RFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRT------------------------------------------  265 (501)
T ss_pred             CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcc------------------------------------------
Confidence              578999999999999999999999887642111000                                          


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHH-HHHHcCCeeeeccCcccCccceecc
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                     ...+..+|.+++||++++..+.+ +.+.++.++++.||+||++.++...
T Consensus       266 -------------------------------~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  314 (501)
T PRK13390        266 -------------------------------RYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFID  314 (501)
T ss_pred             -------------------------------cCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEec
Confidence                                           00112237889999999998744 4455788999999999998655433


Q ss_pred             CCC-CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC--CCccccCceeeeccC
Q 011011          289 RPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE--DGWLNTGDIGWIAPH  365 (495)
Q Consensus       289 ~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~--~~~~~TGDl~~~~~~  365 (495)
                      ... ....+++|+|+++ .++++| ++++++++|+.|||+++|++++.||+++|+.|++.|..  ++|++|||+|++++ 
T Consensus       315 ~~~~~~~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~-  391 (501)
T PRK13390        315 SPDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDE-  391 (501)
T ss_pred             chhhccCCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECC-
Confidence            322 2345789999999 799999 56889999999999999999999999999999988753  67999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~  441 (495)
                               +|++++.||.||+|+. +|++|+|.+||+++.+||.|.+++|++.++.    .+.+++++..+.       
T Consensus       392 ---------dg~l~~~gR~~~~i~~-~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~-------  454 (501)
T PRK13390        392 ---------DGYLYLADRKSFMIIS-GGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGI-------  454 (501)
T ss_pred             ---------CCeEEEeeccccceeE-CCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCC-------
Confidence                     8999999999999997 8999999999999999999999999998753    466777765320       


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          442 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                            .......+++.++++++|+.++     .+++|.++++.+.+.+||+
T Consensus       455 ------~~~~~~~~~l~~~~~~~l~~~~-----~P~~~~~~~~iP~t~~GKi  495 (501)
T PRK13390        455 ------RGSDELARELIDYTRSRIAHYK-----APRSVEFVDELPRTPTGKL  495 (501)
T ss_pred             ------CcchhhHHHHHHHHHHhcccCC-----CCcEEEEeccCCCCCccce
Confidence                  0011124578888888888876     5589999999999999987

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=6.4e-43  Score=364.66  Aligned_cols=334  Identities=25%  Similarity=0.271  Sum_probs=270.4

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---  131 (495)
                      ...+++.++++|||||||.||+|++||+++.....+....++...++++++++|++|.+++...+.++..|+++++.   
T Consensus       137 ~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~  216 (502)
T TIGR01734       137 AVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKD  216 (502)
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHH
Confidence            34688999999999999999999999999998888777778888999999999999999988788889999999874   


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.+.+++++.+.++|+++..+.......                                           
T Consensus       217 ~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~-------------------------------------------  253 (502)
T TIGR01734       217 ITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFN-------------------------------------------  253 (502)
T ss_pred             HhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccc-------------------------------------------
Confidence               4678899999999999999999886654321000                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcccee
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  286 (495)
                                                      ...++.++.++++|++++... +.+.+.+ ++++++.||+||++..++
T Consensus       254 --------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  301 (502)
T TIGR01734       254 --------------------------------QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVT  301 (502)
T ss_pred             --------------------------------cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEE
Confidence                                            012234478889999999887 5556666 789999999999875444


Q ss_pred             ccCC-----CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccC---CCCccccCc
Q 011011          287 ARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD---EDGWLNTGD  358 (495)
Q Consensus       287 ~~~~-----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~---~~~~~~TGD  358 (495)
                      ....     ......++|.+.++++++|+|++ +++++.|+.|||+++|+.++.||+++++.+.+.|.   ..+||+|||
T Consensus       302 ~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGD  380 (502)
T TIGR01734       302 SVKITQEILDQYPRLPIGFAKPDMNLFIMDEE-GEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGD  380 (502)
T ss_pred             EEEccccccccCCccccccccCCCEEEEECCC-CCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCC
Confidence            3221     11233579999999999999955 78899999999999999999999999999988773   246999999


Q ss_pred             eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC-----CCeeEEEEecChH
Q 011011          359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-----QRRPGAIIVPDKE  433 (495)
Q Consensus       359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~-----~~~~~a~vv~~~~  433 (495)
                      +|++++          + ++++.||.+|+|+. +|++|+|.+||+++.++|.|.++++++..     ...+.++|++...
T Consensus       381 lg~~~~----------~-~l~i~GR~~d~i~~-~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~  448 (502)
T TIGR01734       381 AGTITD----------G-QLFYQGRLDFQIKL-HGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETE  448 (502)
T ss_pred             EEEEEC----------C-EEEEeccccCeEEE-CcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEeccc
Confidence            999997          5 99999999999998 89999999999999999999999999843     1357788887643


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          434 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ...            .......++++.++++++.+.     .++++..+++.+.+.+||+
T Consensus       449 ~~~------------~~~~~~~~i~~~~~~~l~~~~-----~P~~~~~v~~lP~t~~gKv  491 (502)
T TIGR01734       449 DFE------------KEFQLTKAIKKELKKSLPAYM-----IPRKFIYRDQLPLTANGKI  491 (502)
T ss_pred             ccc------------cchhhHHHHHHHHhhhChhhc-----CCcEEEEccccCCCCCCcc
Confidence            100            001112667888888887775     6689999999999999997

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-42  Score=345.87  Aligned_cols=306  Identities=26%  Similarity=0.322  Sum_probs=244.7

Q ss_pred             cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEe--
Q 011011           53 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY--  130 (495)
Q Consensus        53 ~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~--  130 (495)
                      .....++|+++++|||||||.||+|++||+++..........+  ...++++..+|++|.+++...+.++..|++.+.  
T Consensus        29 ~~~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~  106 (358)
T PRK07824         29 VGEPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELD  106 (358)
T ss_pred             cCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecC
Confidence            3445679999999999999999999999999987766554433  345788999999999998877777888888766  


Q ss_pred             ----cchHhHHHHHhHhCC--cEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          131 ----TAVRNLKDDLQRYQP--HYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       131 ----~~~~~~~~~i~~~~~--t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                          +++..+++.+++++.  ++...+|..+..++....                                         
T Consensus       107 ~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-----------------------------------------  145 (358)
T PRK07824        107 VSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-----------------------------------------  145 (358)
T ss_pred             cCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-----------------------------------------
Confidence                357889999999984  445556665544322100                                         


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccc
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPV  284 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~  284 (495)
                                                         ....+..++.+++||+++++...+....+++++++.||+||++..
T Consensus       146 -----------------------------------~~~~~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~~~~  190 (358)
T PRK07824        146 -----------------------------------ATAALAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSETSGG  190 (358)
T ss_pred             -----------------------------------ccCCcccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCccCCC
Confidence                                               001233458999999999999866666679999999999998754


Q ss_pred             eeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeecc
Q 011011          285 IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  364 (495)
Q Consensus       285 ~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~  364 (495)
                      +.          ..|.|++++++++.|            |||+++|+.++.||+++++.+  .|..++||+|||+|++ +
T Consensus       191 ~~----------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~  245 (358)
T PRK07824        191 CV----------YDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-D  245 (358)
T ss_pred             cC----------cCceeCCCCEEEecC------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-e
Confidence            32          358899999999843            899999999999999988754  4556789999999999 5


Q ss_pred             CCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHH
Q 011011          365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  440 (495)
Q Consensus       365 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~  440 (495)
                                +|++++.||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.+++    .+.++++...+       
T Consensus       246 ----------~g~l~i~GR~~d~i~~-~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~-------  307 (358)
T PRK07824        246 ----------DGVLTVLGRADDAIST-GGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGG-------  307 (358)
T ss_pred             ----------CCEEEEEeccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCC-------
Confidence                      7999999999999998 8999999999999999999999999998754    35566665432       


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          441 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       441 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                               .....+++++++++.|+.++     .+++|.++++.+.+.+||+
T Consensus       308 ---------~~~~~~~i~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi  346 (358)
T PRK07824        308 ---------PAPTLEALRAHVARTLDRTA-----APRELHVVDELPRRGIGKV  346 (358)
T ss_pred             ---------CCcCHHHHHHHHHhhCcccc-----CCCEEEEecCCCCCCCccc
Confidence                     33567889999999998886     4588999999999999986

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=1.1e-42  Score=367.62  Aligned_cols=330  Identities=28%  Similarity=0.441  Sum_probs=266.2

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccC----CCCC-cEEEEECChhhHHHHHH-hHhHhhcCceE
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP----AENG-DKFLSMLPPWHVYERAC-GYFIFSRGIEL  128 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~----~~~~-d~~l~~~p~~h~~~~~~-~~~~~~~G~~~  128 (495)
                      ...++++++++|||||||.||+|++||+++..........++    +.++ +++++.+|++|++++.. .+..+..|++.
T Consensus       204 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  283 (560)
T PRK08751        204 QIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCN  283 (560)
T ss_pred             CCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceE
Confidence            346789999999999999999999999999876665444333    3333 57788899999999865 34445556555


Q ss_pred             Ee-c---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          129 MY-T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       129 ~~-~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                      ++ .   ++..+++.++++++|.+.++|.++..+.+.....                                       
T Consensus       284 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------------------------------  324 (560)
T PRK08751        284 HLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFD---------------------------------------  324 (560)
T ss_pred             EEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcC---------------------------------------
Confidence            44 2   5788999999999999999999997765421000                                       


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCcc
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSP  283 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~  283 (495)
                                                          ...++.+|.+++||++++..+ ..+.+.+++++++.||+||++.
T Consensus       325 ------------------------------------~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  368 (560)
T PRK08751        325 ------------------------------------QIDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSP  368 (560)
T ss_pred             ------------------------------------CcchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCC
Confidence                                                001123488999999999887 4555567999999999999987


Q ss_pred             ceeccCCC-CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeee
Q 011011          284 VIAARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  362 (495)
Q Consensus       284 ~~~~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~  362 (495)
                      .++..... ....+++|.|++++.++++| +.+++++.|+.|||+++|+.++.||+++++.+++.|..+|||+|||+|++
T Consensus       369 ~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~  447 (560)
T PRK08751        369 AACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARM  447 (560)
T ss_pred             ceecccccccccCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEE
Confidence            66544322 23457899999999999999 56889999999999999999999999999999999988899999999999


Q ss_pred             ccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHH
Q 011011          363 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  438 (495)
Q Consensus       363 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~  438 (495)
                      ++          +|++++.||.+|+|++ +|.+|+|.+||+++.+||.|.+|+|++.++.    .+.++++...      
T Consensus       448 ~~----------~g~l~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~------  510 (560)
T PRK08751        448 DE----------QGFVYIVDRKKDMILV-SGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKD------  510 (560)
T ss_pred             cC----------CceEEEEeechhheeE-CCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCC------
Confidence            98          8999999999999998 8999999999999999999999999998653    3445555432      


Q ss_pred             HHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          439 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                 ...+.+++++.+++.++.++     .++.|.++++.+.+.+||+
T Consensus       511 -----------~~~~~~~l~~~~~~~l~~~~-----~P~~v~~v~~lP~t~~gKv  549 (560)
T PRK08751        511 -----------PALTAEDVKAHARANLTGYK-----QPRIIEFRKELPKTNVGKI  549 (560)
T ss_pred             -----------CCCCHHHHHHHHHHhhhhcc-----CCeEEEEhhhCCCCccccc
Confidence                       23456789999999999886     5588999999999999986

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-42  Score=363.14  Aligned_cols=327  Identities=21%  Similarity=0.262  Sum_probs=264.0

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHH--HHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEe---c
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLH--QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY---T  131 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~--~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~---~  131 (495)
                      .+++.++++|||||||.||+|++||.....  ........+++.++|++++.+|++|.+++...+.++..|++++.   .
T Consensus       172 ~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~  251 (516)
T PRK13383        172 VAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHF  251 (516)
T ss_pred             CCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCC
Confidence            346678999999999999999999974321  11222334567889999999999999999877777888999876   3


Q ss_pred             chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHH
Q 011011          132 AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVA  211 (495)
Q Consensus       132 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  211 (495)
                      ++..+++.++++++|.+.++|+++..+........                                             
T Consensus       252 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------------------------------  286 (516)
T PRK13383        252 DAEAALAQASLHRADAFTAVPVVLARILELPPRVR---------------------------------------------  286 (516)
T ss_pred             CHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc---------------------------------------------
Confidence            68889999999999999999999987764321100                                             


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          212 LIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                  -...+..+|.+++||++++++. +.+.+.++.++++.||+||++........
T Consensus       287 ----------------------------~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~  338 (516)
T PRK13383        287 ----------------------------ARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPA  338 (516)
T ss_pred             ----------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceecccc
Confidence                                        0012234589999999999887 55667789999999999999865543332


Q ss_pred             C-CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCC
Q 011011          291 T-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  369 (495)
Q Consensus       291 ~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~  369 (495)
                      . ....+++|.|+++++++|+|+ +++++++|+.|||+++|+.++.||++++..   .+ .+|||+|||+|++++     
T Consensus       339 ~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~-~~g~~~TGDl~~~d~-----  408 (516)
T PRK13383        339 DLRDAPETVGKPVAGCPVRILDR-NNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV-VDGMTSTGDMGYLDN-----  408 (516)
T ss_pred             ccccCCCcccCCCCCcEEEEECC-CCCCCCCCCceEEEEecCcccccccCCchh---he-ecCceecceeEEEcC-----
Confidence            1 234578999999999999994 578999999999999999999999987642   22 479999999999998     


Q ss_pred             CccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCCC
Q 011011          370 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIV  445 (495)
Q Consensus       370 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~  445 (495)
                           +|++++.||.||+|++ +|.+|+|.+||.+|.+||.|.++++++.++.    .+.++|++++.            
T Consensus       409 -----~G~l~i~GR~~~~i~~-~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~------------  470 (516)
T PRK13383        409 -----AGRLFIVGREDDMIIS-GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPG------------  470 (516)
T ss_pred             -----CccEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCC------------
Confidence                 8999999999999998 8999999999999999999999999997643    46678887543            


Q ss_pred             cCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          446 HADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       446 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                          ...+.++++++++++++.++     ++.+|.++++.+.+.+||+
T Consensus       471 ----~~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~iP~t~~gKi  509 (516)
T PRK13383        471 ----SGVDAAQLRDYLKDRVSRFE-----QPRDINIVSSIPRNPTGKV  509 (516)
T ss_pred             ----CCCCHHHHHHHHHHhcccCC-----CCcEEEEeCCCCCCCCCcC
Confidence                23456788999998888775     5588999999999999986

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-42  Score=367.88  Aligned_cols=330  Identities=25%  Similarity=0.336  Sum_probs=263.0

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh-cccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY-DIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      ...++++++|+|||||||.||+|++||+++........ ......++|++++++|++|++++.. .+.++..|+++++. 
T Consensus       205 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~  284 (567)
T PRK06178        205 PPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA  284 (567)
T ss_pred             CCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeC
Confidence            35689999999999999999999999999876554432 2356778899999999999999865 45568899998874 


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..++..+++++++.+..+|..+..+.......                              .             
T Consensus       285 ~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~------------------------------~-------------  321 (567)
T PRK06178        285 RWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFA------------------------------E-------------  321 (567)
T ss_pred             CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCC------------------------------C-------------
Confidence              5889999999999999999998887664421000                              0             


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEE--EeccCCCChhHH-HHHHHcCCeeee-ccCcccCccce
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAG--VSGGGSLPMHID-LFYEAIGVKVQV-GYGLTESSPVI  285 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~gg~~l~~~~~-~~~~~~g~~v~~-~YG~TE~~~~~  285 (495)
                                                      ..+..++.+  .++++.++++.. .+.+.+|..++. .||+||++..+
T Consensus       322 --------------------------------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~  369 (567)
T PRK06178        322 --------------------------------YDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCD  369 (567)
T ss_pred             --------------------------------CCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccc
Confidence                                            000111332  344578888774 445567877665 79999987654


Q ss_pred             eccCC---C----CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCc
Q 011011          286 AARRP---T----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  358 (495)
Q Consensus       286 ~~~~~---~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGD  358 (495)
                      .....   .    ...++++|.|+++++++++|++++++++.|+.|||+++|++++.||+++++.+++.| .+|||+|||
T Consensus       370 ~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGD  448 (567)
T PRK06178        370 TFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGD  448 (567)
T ss_pred             eeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcc-cCCceeecc
Confidence            43221   1    123567899999999999998889999999999999999999999999999999888 478999999


Q ss_pred             eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHH
Q 011011          359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEE  434 (495)
Q Consensus       359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~  434 (495)
                      ++++++          +|+++++||++|+|+. +|.+|+|.+||+++.++|.|.+++|++.++.    .+.++|+++++ 
T Consensus       449 l~~~~~----------~g~l~i~GR~~d~i~~-~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~-  516 (567)
T PRK06178        449 IGKIDE----------QGFLHYLGRRKEMLKV-NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPG-  516 (567)
T ss_pred             eEEEec----------CCeEEEEecccccEEE-CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCC-
Confidence            999988          8999999999999998 8999999999999999999999999997643    46678887643 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          435 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                     ...+.++++++++++++.++.|      .+.++++.+.+.+||+
T Consensus       517 ---------------~~~~~~~l~~~~~~~l~~~~~p------~i~~v~~iP~t~~GKv  554 (567)
T PRK06178        517 ---------------ADLTAAALQAWCRENMAVYKVP------EIRIVDALPMTATGKV  554 (567)
T ss_pred             ---------------CcCCHHHHHHHHHhcCcccCCc------eEEEeccCCCCCccce
Confidence                           2346778999999988877533      3778899999999987

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=3.4e-42  Score=355.01  Aligned_cols=308  Identities=25%  Similarity=0.386  Sum_probs=259.0

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecchH
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVR  134 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~~~  134 (495)
                      ...++++++++|||||||.||+|++||+++..........++..++|++++.+|++|.+++...+.++..|+++++.+..
T Consensus       131 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~~  210 (458)
T PRK09029        131 AWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDKQ  210 (458)
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCChH
Confidence            45689999999999999999999999999998888877778889999999999999999987777779999999988777


Q ss_pred             hHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHH
Q 011011          135 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  214 (495)
Q Consensus       135 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  214 (495)
                      .++..+.  +++.+..+|+++..+......                                                  
T Consensus       211 ~~~~~i~--~~t~~~~~P~~~~~l~~~~~~--------------------------------------------------  238 (458)
T PRK09029        211 PLEQALA--GCTHASLVPTQLWRLLDNRSE--------------------------------------------------  238 (458)
T ss_pred             HHHHHHh--hceeeecChHHHHHHHhcccc--------------------------------------------------
Confidence            7888774  788888899988766542100                                                  


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCCCCCC
Q 011011          215 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV  294 (495)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~  294 (495)
                                                   ...+|.+++||+++++.+.+..+.+|.++++.||+||++........  ..
T Consensus       239 -----------------------------~~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~--~~  287 (458)
T PRK09029        239 -----------------------------PLSLKAVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEMASTVCAKRA--DG  287 (458)
T ss_pred             -----------------------------CCcceEEEECCCCCCHHHHHHHHHcCCcEeccccccccCcceeccCC--CC
Confidence                                         01238899999999998866666779999999999999865543322  22


Q ss_pred             ccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCcccc
Q 011011          295 LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRC  374 (495)
Q Consensus       295 ~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~  374 (495)
                      ..++|+|++++.+++.+            |||+++|+.++.||+++++.+.... .+|||+|||+|++++          
T Consensus       288 ~~~~G~~~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~----------  344 (458)
T PRK09029        288 LAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQN----------  344 (458)
T ss_pred             CCCCCCCCCCCEEEEeC------------CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEeC----------
Confidence            35699999999999976            8999999999999999998886543 589999999999984          


Q ss_pred             CCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCCCcCCcc
Q 011011          375 GGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADAS  450 (495)
Q Consensus       375 ~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~  450 (495)
                       |++++.||+||+|++ +|++|+|.+||++|.+||.|.+|+|++.+++    .+.++|+++.                  
T Consensus       345 -g~l~~~gR~~d~i~~-~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~------------------  404 (458)
T PRK09029        345 -GELTILGRLDNLFFS-GGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS------------------  404 (458)
T ss_pred             -CEEEEecccccceee-CCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc------------------
Confidence             999999999999997 8999999999999999999999999998754    4667777652                  


Q ss_pred             ccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          451 ELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       451 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ..+.++++++++++|+.|+     ++.++..+++.+.+.+||+
T Consensus       405 ~~~~~~l~~~~~~~l~~~~-----~P~~~~~~~~~p~t~~gKi  442 (458)
T PRK09029        405 EAAVVNLAEWLQDKLARFQ-----QPVAYYLLPPELKNGGIKI  442 (458)
T ss_pred             ccCHHHHHHHHHhhchhcc-----CCeEEEEecccccCcCCCc
Confidence            2356789999999999987     5588999998888888886

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.1e-42  Score=359.96  Aligned_cols=328  Identities=27%  Similarity=0.417  Sum_probs=264.2

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHH-H-HHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLL-H-QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~-~-~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-  131 (495)
                      ..+++++++++|||||||.||+|++||+++. . ........+++..+|+++..+|++|.+++...+.++..|+++++. 
T Consensus       173 ~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~~g~~~v~~~  252 (542)
T PRK06018        173 TFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPG  252 (542)
T ss_pred             cCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhhcCceEEccC
Confidence            4567889999999999999999999999743 2 223344556788999999999999999988777778899988764 


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|.+.++|+++..+........                                          
T Consensus       253 ~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------------------  290 (542)
T PRK06018        253 AKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEG------------------------------------------  290 (542)
T ss_pred             cCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccC------------------------------------------
Confidence               46789999999999999999999988765422110                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceecc
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                       ..+..+|.+++||+++++++.+.++.++.++++.||+||++.+.+..
T Consensus       291 ---------------------------------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  337 (542)
T PRK06018        291 ---------------------------------LKLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLA  337 (542)
T ss_pred             ---------------------------------CCcccceEEEEcCCCCCHHHHHHHHHhCCCeEeeecccccCcccccc
Confidence                                             01223488999999999987444433999999999999998765543


Q ss_pred             CCCC-----------CCccccccCcCCcEEEEEeCCCCCcCCCC--CccEEEEccCCcchhccCCchhhhhccCCCCccc
Q 011011          289 RPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN  355 (495)
Q Consensus       289 ~~~~-----------~~~~~~G~p~~~~~v~i~d~~~~~~~~~g--~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~  355 (495)
                      ....           ....++|+|.++++++|+|+ +++++|.+  ..|||+++|++++.||+++   +...++.++||+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~-~~~~~~~~~~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~  413 (542)
T PRK06018        338 ALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDD-AGKELPWDGKTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFD  413 (542)
T ss_pred             cCccccccCCchhhhhccccCCCCCCCcEEEEECC-CCCCCCCCCCceeEEEEecCCcchhhhcC---cccEecCCcEEE
Confidence            2110           11357899999999999995 46777653  5799999999999999984   334556789999


Q ss_pred             cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecC
Q 011011          356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  431 (495)
Q Consensus       356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~  431 (495)
                      |||++++++          +|++++.||.+|+|+. +|.+|+|.+||+++.+||.|.+|+|++.+++    ...++|++.
T Consensus       414 TGDl~~~~~----------~g~~~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  482 (542)
T PRK06018        414 TGDVATIDA----------YGYMRITDRSKDVIKS-GGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLK  482 (542)
T ss_pred             cCCEEEEcC----------CccEEEEecCCCeEEE-CCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeC
Confidence            999999998          8999999999999996 9999999999999999999999999998654    466777765


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          432 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ++                ...+.+++.++++++++.+.     .+++|.++++.+.+.+||+
T Consensus       483 ~~----------------~~~~~~~l~~~~~~~l~~~~-----~P~~i~~v~~iP~t~~GKi  523 (542)
T PRK06018        483 PG----------------ETATREEILKYMDGKIAKWW-----MPDDVAFVDAIPHTATGKI  523 (542)
T ss_pred             CC----------------CCCCHHHHHHHHHhhCcccc-----CCcEEEEeccCCCCCcchh
Confidence            43                33466789999999888875     5589999999999999986

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.3e-42  Score=431.81  Aligned_cols=329  Identities=21%  Similarity=0.303  Sum_probs=281.1

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---  131 (495)
                      ...+++++|++|||||||.||||+++|+++.+.+.+....+++.++|++++..|+.|..+....+.++..|+++++.   
T Consensus      1269 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~ 1348 (4334)
T PRK05691       1269 HLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPG 1348 (4334)
T ss_pred             CCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCcc
Confidence            45689999999999999999999999999998888888888999999999999999999887788889999999884   


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++..+|+++..+......                                            
T Consensus      1349 ~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~-------------------------------------------- 1384 (4334)
T PRK05691       1349 EHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA-------------------------------------------- 1384 (4334)
T ss_pred             ccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc--------------------------------------------
Confidence               467899999999999999999999877542100                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcccee
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  286 (495)
                                                       ..+..+|.+++||+++++.+ ..+.+.+ +++++|.||+||++..++
T Consensus      1385 ---------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 1431 (4334)
T PRK05691       1385 ---------------------------------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVT 1431 (4334)
T ss_pred             ---------------------------------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeee
Confidence                                             12234589999999999987 5555665 689999999999986655


Q ss_pred             ccC--CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC-------CCccccC
Q 011011          287 ARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-------DGWLNTG  357 (495)
Q Consensus       287 ~~~--~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~-------~~~~~TG  357 (495)
                      ...  .......++|+|++++.++|+|+ .++++|.|+.|||+|+|+++++||+++|+.|++.|..       .+||+||
T Consensus      1432 ~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1510 (4334)
T PRK05691       1432 HWQCQAEDGERSPIGRPLGNVLCRVLDA-ELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTG 1510 (4334)
T ss_pred             eeecccccCCCCcccceeCCCEEEEECC-CCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEcc
Confidence            322  22334568999999999999995 5889999999999999999999999999999999843       2599999


Q ss_pred             ceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC---CeeEEEEecChHH
Q 011011          358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEE  434 (495)
Q Consensus       358 Dl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~---~~~~a~vv~~~~~  434 (495)
                      |+|++++          ||.++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++   ..+.+++++..+ 
T Consensus      1511 Dl~~~~~----------dG~l~~~GR~d~qiki-~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~~~- 1578 (4334)
T PRK05691       1511 DRARWNA----------DGALEYLGRLDQQVKL-RGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGEAG- 1578 (4334)
T ss_pred             ceEEECC----------CCCEEEecccCcEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeCCC-
Confidence            9999999          8999999999999998 899999999999999999999999987643   467788886543 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          435 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                     .....++++++++++|+.|+.|     +.|..+++.+.+.|||+
T Consensus      1579 ---------------~~~~~~~l~~~l~~~Lp~y~vP-----~~~~~~~~lP~t~~GKi 1617 (4334)
T PRK05691       1579 ---------------QEAEAERLKAALAAELPEYMVP-----AQLIRLDQMPLGPSGKL 1617 (4334)
T ss_pred             ---------------CCCCHHHHHHHHHHhCccccCC-----cEEEEccccCCCCCCCc
Confidence                           2345678999999999999855     78999999999999987

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=4.8e-42  Score=358.68  Aligned_cols=332  Identities=22%  Similarity=0.252  Sum_probs=270.2

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHH---HHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l---~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~  131 (495)
                      ...++++++++|||||||.||+|+++|.+.   ..........+++.+++++++.+|++|..+....+.++..|+++++.
T Consensus       148 ~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~  227 (509)
T PRK12406        148 GPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQ  227 (509)
T ss_pred             CCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEc
Confidence            345789999999999999999999876653   33333445567788999999999999998887777778888888774


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++.++|+++..++.......                                          
T Consensus       228 ~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------  265 (509)
T PRK12406        228 PRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVR------------------------------------------  265 (509)
T ss_pred             cCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhc------------------------------------------
Confidence               58899999999999999999999988764211100                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHH-HHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                     ....+..+|.+++||+++++++.+.. +.++..+++.||+||++.++..
T Consensus       266 -------------------------------~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  314 (509)
T PRK12406        266 -------------------------------AKYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFA  314 (509)
T ss_pred             -------------------------------ccCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEec
Confidence                                           00112345889999999999885544 5579999999999999876554


Q ss_pred             cCCC-CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcch-hccCCchhhhhccCCCCccccCceeeeccC
Q 011011          288 RRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQ-GYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       288 ~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~-gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      .... ...++++|.|+++++++++|+ ++++++.|+.|||+++++.++. ||+++++.++..+ .++||+|||++++++ 
T Consensus       315 ~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~-  391 (509)
T PRK12406        315 TSEDALSHPGTVGKAAPGAELRFVDE-DGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDA-  391 (509)
T ss_pred             CcccccccCCCcCccCCCcEEEEECC-CCCCCCCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEEcC-
Confidence            3322 235578999999999999995 5789999999999999998875 9999999887766 589999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~  441 (495)
                               +|++++.||.||+|+. +|.+|+|.+||++|.++|.|.++++++.++.    .+.+++++...        
T Consensus       392 ---------~g~~~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--------  453 (509)
T PRK12406        392 ---------DGYLFLCDRKRDMVIS-GGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPG--------  453 (509)
T ss_pred             ---------CceEEEeecccceEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCC--------
Confidence                     8999999999999997 8999999999999999999999999988653    35677776532        


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          442 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                              .....+++++.+++.++.++     .+..+.++++.+.+.+||+
T Consensus       454 --------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~~iP~t~~GK~  492 (509)
T PRK12406        454 --------ATLDEADIRAQLKARLAGYK-----VPKHIEIMAELPREDSGKI  492 (509)
T ss_pred             --------CCCCHHHHHHHHHHhcccCC-----CCcEEEEeccCCCCCccch
Confidence                    23456889999999988886     4578889999999999986

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.7e-41  Score=353.98  Aligned_cols=335  Identities=23%  Similarity=0.279  Sum_probs=270.4

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---  131 (495)
                      ...++++++++|||||||.||+|.+||+++..........+++..++++++.+|++|..+....+.++..|+++++.   
T Consensus       139 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~  218 (503)
T PRK04813        139 AVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKD  218 (503)
T ss_pred             cCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChh
Confidence            45678999999999999999999999999988877777778888999999999999999887777788899988764   


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.+++++++.+..+|+++..+.......                                           
T Consensus       219 ~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~-------------------------------------------  255 (503)
T PRK04813        219 MTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN-------------------------------------------  255 (503)
T ss_pred             hhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC-------------------------------------------
Confidence               4678899999999999999999987654321000                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcccee
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  286 (495)
                                                      ...++.++.++++|+++++.+ +.+.+.+ +.++++.||+||++..++
T Consensus       256 --------------------------------~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  303 (503)
T PRK04813        256 --------------------------------EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVT  303 (503)
T ss_pred             --------------------------------cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEE
Confidence                                            012334588999999999887 5555666 789999999999876544


Q ss_pred             ccCC-----CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC-C--CccccCc
Q 011011          287 ARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-D--GWLNTGD  358 (495)
Q Consensus       287 ~~~~-----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~-~--~~~~TGD  358 (495)
                      ....     ......++|.+.++++++|+| +.+.+++.|+.|||+++|+.++.||+++++.+.+.|.. +  +||+|||
T Consensus       304 ~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD  382 (503)
T PRK04813        304 SIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGD  382 (503)
T ss_pred             EEEecccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCc
Confidence            3211     113345799999999999999 56888999999999999999999999999999988743 3  5999999


Q ss_pred             eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHH
Q 011011          359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE  434 (495)
Q Consensus       359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~  434 (495)
                      ++++ +          +|++++.||.||+|+. +|++|+|.+||+.+.++|.|.+++|++.++    +.+.++++++.+.
T Consensus       383 ~~~~-~----------~g~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~  450 (503)
T PRK04813        383 AGYL-E----------DGLLFYQGRIDFQIKL-NGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEED  450 (503)
T ss_pred             eEEe-e----------CCeEEEeccccceEEE-CcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEecccc
Confidence            9999 6          7999999999999998 899999999999999999999999998654    3577888876431


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          435 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                      ..            ......++++++++++++.+.     .+++|..+++.+...+||+.
T Consensus       451 ~~------------~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~gKv~  493 (503)
T PRK04813        451 FE------------REFELTKAIKKELKERLMEYM-----IPRKFIYRDSLPLTPNGKID  493 (503)
T ss_pred             cc------------ccchhHHHHHHHHHhhCcccc-----CCeEEEEeccCCCCCCCCCc
Confidence            00            001112456677776666664     56899999999999999973

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.3e-42  Score=431.62  Aligned_cols=331  Identities=22%  Similarity=0.247  Sum_probs=279.9

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---  131 (495)
                      ...|++++||+|||||||.||||+++|+++.+.+.+....++++++|+++...|+.|..+....+.++..|+++++.   
T Consensus      3865 ~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~ 3944 (4334)
T PRK05691       3865 YSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNA 3944 (4334)
T ss_pred             CCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCcc
Confidence            45789999999999999999999999999999988888889999999999999999999988888889999998874   


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++..+|+++..++....                                             
T Consensus      3945 ~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~--------------------------------------------- 3979 (4334)
T PRK05691       3945 IAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDR--------------------------------------------- 3979 (4334)
T ss_pred             ccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcc---------------------------------------------
Confidence               46789999999999999999999977653210                                             


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcccee
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  286 (495)
                                                       ..+..+|.+++||+++++.. +.|.+.+ +++++|.||+||++..++
T Consensus      3980 ---------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~ 4026 (4334)
T PRK05691       3980 ---------------------------------QALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVA 4026 (4334)
T ss_pred             ---------------------------------ccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEE
Confidence                                             11234589999999999887 6666654 789999999999987665


Q ss_pred             ccCCCC----CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC-------CCccc
Q 011011          287 ARRPTC----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE-------DGWLN  355 (495)
Q Consensus       287 ~~~~~~----~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~-------~~~~~  355 (495)
                      ......    ....++|+|++++.+.|+| +.++++|.|.+|||+|+|+.+++||+|+|++|+++|..       ++|||
T Consensus      4027 ~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yr 4105 (4334)
T PRK05691       4027 FFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYR 4105 (4334)
T ss_pred             EEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeec
Confidence            433211    2234699999999999999 56899999999999999999999999999999999943       46999


Q ss_pred             cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEec---CCCeeEEEEecCh
Q 011011          356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ---DQRRPGAIIVPDK  432 (495)
Q Consensus       356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~---~~~~~~a~vv~~~  432 (495)
                      |||+|++++          ||.++|+||+||+||+ +|++|++.|||++|.++|+|.+|+|+..   ..+.+.|++++..
T Consensus      4106 TGDl~~~~~----------dG~l~~~GR~d~qvki-~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~~~~ 4174 (4334)
T PRK05691       4106 TGDLARRRS----------DGVLEYVGRIDHQVKI-RGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLVPHQ 4174 (4334)
T ss_pred             cCcceeecC----------CCcEEEecccCCcEEe-ceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEeCCc
Confidence            999999998          8999999999999998 9999999999999999999999998743   2457889998764


Q ss_pred             HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          433 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ...             ......+++++.++++|+.|+.|     ..|..+++.+.+.|||+
T Consensus      4175 ~~~-------------~~~~~~~~l~~~l~~~Lp~ymvP-----~~~~~~~~lP~t~~GKi 4217 (4334)
T PRK05691       4175 TVL-------------AQGALLERIKQRLRAELPDYMVP-----LHWLWLDRLPLNANGKL 4217 (4334)
T ss_pred             ccc-------------cchHHHHHHHHHHHhhCChhhcC-----cceeecccCCCCCCCcc
Confidence            310             01112467889999999999866     78888999999999996

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-42  Score=366.69  Aligned_cols=326  Identities=24%  Similarity=0.303  Sum_probs=254.1

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHh-HhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~-~~~~G~~~~~~--  131 (495)
                      ...++++++|+|||||||.||||++||+++...+..+...++++++|++++.+|++|.+++...+. ++..|+++++.  
T Consensus       195 ~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~  274 (600)
T PRK08279        195 GVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRK  274 (600)
T ss_pred             CCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCC
Confidence            456789999999999999999999999999998888777788999999999999999999887655 47788888774  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++++++|.+..+|+++..+........                                            
T Consensus       275 ~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~--------------------------------------------  310 (600)
T PRK08279        275 FSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT--------------------------------------------  310 (600)
T ss_pred             CCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc--------------------------------------------
Confidence             57889999999999999999998876654210000                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCC-eeeeccCcccCccceecc
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~~~~  288 (495)
                                                     .....++.  ++|+.+++.+ +.+.+.++. .+++.||+||++..... 
T Consensus       311 -------------------------------~~~~~l~~--~~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~-  356 (600)
T PRK08279        311 -------------------------------DRDHRLRL--MIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFIN-  356 (600)
T ss_pred             -------------------------------ccCcceeE--EecCCCCHHHHHHHHHHhCcceeeeeecccccceeecc-
Confidence                                           00111243  3466677765 666777875 59999999998754332 


Q ss_pred             CCCCCCccccccCcC----CcEEEEEeCCCC----------CcCCCCCccEEE--EccCCcchhccCCchhhhhccC---
Q 011011          289 RPTCNVLGSVGHPIN----HTEIKIVDAETN----------EVLPAGSKGIVK--VRGSQVMQGYFKNPSATKQALD---  349 (495)
Q Consensus       289 ~~~~~~~~~~G~p~~----~~~v~i~d~~~~----------~~~~~g~~GEl~--v~~p~~~~gY~~~~~~t~~~~~---  349 (495)
                      .  ....+++|.+.+    +..+...+.+++          .++++|+.|||+  +.++.++.|| ++++.|++.|.   
T Consensus       357 ~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~  433 (600)
T PRK08279        357 V--FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDV  433 (600)
T ss_pred             c--CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcc
Confidence            1  223456776555    333322222222          357889999998  7799999999 99999887762   


Q ss_pred             ---CCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----
Q 011011          350 ---EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----  422 (495)
Q Consensus       350 ---~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----  422 (495)
                         .++||+|||+|++++          +|++++.||.||+|++ +|++|+|.|||+++.+||.|.+|+|++.+++    
T Consensus       434 ~~~~~~~~~TGDlg~~~~----------dG~l~~~GR~~d~ik~-~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~  502 (600)
T PRK08279        434 FKKGDAWFNTGDLMRDDG----------FGHAQFVDRLGDTFRW-KGENVATTEVENALSGFPGVEEAVVYGVEVPGTDG  502 (600)
T ss_pred             cCCCCceEeecceEEEcC----------CccEEEecccCCeEEE-CCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCC
Confidence               358999999999998          8999999999999998 8999999999999999999999999987532    


Q ss_pred             -eeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          423 -RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       423 -~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                       ...++++...+                ...+.++++++++++|+.|+     .++.|.++++.+.+.+||+
T Consensus       503 ~~~~~~vv~~~~----------------~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  553 (600)
T PRK08279        503 RAGMAAIVLADG----------------AEFDLAALAAHLYERLPAYA-----VPLFVRLVPELETTGTFKY  553 (600)
T ss_pred             ccceeEEEecCC----------------ccCCHHHHHHHHHhhCcccc-----CCeEEEeecCCCCCcchhh
Confidence             23344554322                34567899999999999997     4589999999999999987

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=5.5e-42  Score=390.42  Aligned_cols=322  Identities=22%  Similarity=0.315  Sum_probs=262.9

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~--  131 (495)
                      ..+++|+++++|||||||.||||++||+++..........++.+++|++++.+|++|.+++.. .+.++..|.++++.  
T Consensus       789 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~  868 (1140)
T PRK06814        789 NRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPS  868 (1140)
T ss_pred             CCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecC
Confidence            357899999999999999999999999999888887777788999999999999999999855 45568899998774  


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        +.+.+.+.++++++|.+..+|+++..+.+....                                             
T Consensus       869 ~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~---------------------------------------------  903 (1140)
T PRK06814        869 PLHYRIIPELIYDTNATILFGTDTFLNGYARYAHP---------------------------------------------  903 (1140)
T ss_pred             cccHHHHHHHHHhcCCEEEEecHHHHHHHHhhccc---------------------------------------------
Confidence              345678899999999999999998776442100                                             


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceecc
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                      ..+..+|.+++||+++++++ +.+.+.++.++++.||+||++..+...
T Consensus       904 --------------------------------~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  951 (1140)
T PRK06814        904 --------------------------------YDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALN  951 (1140)
T ss_pred             --------------------------------ccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEec
Confidence                                            11233589999999999987 455567899999999999998776655


Q ss_pred             CCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011          289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  368 (495)
Q Consensus       289 ~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~  368 (495)
                      .+.....+++|+|.|++++++.+.+     ..|+.|||+++|++++.||+++++........+|||+|||++++++    
T Consensus       952 ~~~~~~~~~vG~p~~g~~~~~~~~~-----~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~---- 1022 (1140)
T PRK06814        952 TPMHNKAGTVGRLLPGIEYRLEPVP-----GIDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDE---- 1022 (1140)
T ss_pred             CCCCCCCCcCCccCCCCeEEEeecC-----CCCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECC----
Confidence            5444567899999999999998743     1367899999999999999998754332223589999999999998    


Q ss_pred             CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCe----eEEEEecChHHHHHHHHHcCC
Q 011011          369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLSI  444 (495)
Q Consensus       369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~----~~a~vv~~~~~~~~~~~~~~~  444 (495)
                            ||++++.||.||+|+. +|++|+|.|||+++.+||.|.+++|++.+++.    +.+++. .             
T Consensus      1023 ------dG~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~-~------------- 1081 (1140)
T PRK06814       1023 ------EGFITIKGRAKRFAKI-AGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT-A------------- 1081 (1140)
T ss_pred             ------CCeEEEEecccCeeee-CCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc-C-------------
Confidence                  8999999999999998 89999999999999999999999999987654    323322 1             


Q ss_pred             CcCCccccChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          445 VHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                           .+.+.+++.+++++. ++.++     .+++|.++++.+.+.+||+
T Consensus      1082 -----~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi 1121 (1140)
T PRK06814       1082 -----SDATRAAFLAHAKAAGASELM-----VPAEIITIDEIPLLGTGKI 1121 (1140)
T ss_pred             -----CCcCHHHHHHHHHHcCCCccc-----CCcEEEEecCcCCCCCCCC
Confidence                 234567788888764 76665     4588999999999999997

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=7.9e-42  Score=361.32  Aligned_cols=334  Identities=22%  Similarity=0.331  Sum_probs=259.0

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHh-HhhcCceEEec--ch
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMYT--AV  133 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~-~~~~G~~~~~~--~~  133 (495)
                      +.+++++++|||||||.||||++||+++..........+++..++++++.+|++|++++...+. .+..|.++++.  ++
T Consensus       193 ~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~~~~~~  272 (567)
T PLN02479        193 DEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLRQVTA  272 (567)
T ss_pred             CcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEeccCCCH
Confidence            3457788999999999999999999998765555555667888999999999999999866544 35666666553  68


Q ss_pred             HhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHH
Q 011011          134 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  213 (495)
Q Consensus       134 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  213 (495)
                      ..+++.++++++|++.++|+++..+........                                               
T Consensus       273 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------------------  305 (567)
T PLN02479        273 KAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET-----------------------------------------------  305 (567)
T ss_pred             HHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc-----------------------------------------------
Confidence            899999999999999999999988765321100                                               


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccC--C-
Q 011011          214 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARR--P-  290 (495)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~--~-  290 (495)
                                                 ...+..++.++++|+++++.+.+.++..+.++++.||+||+++.++...  + 
T Consensus       306 ---------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~  358 (567)
T PLN02479        306 ---------------------------ILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPE  358 (567)
T ss_pred             ---------------------------cccccceeEEEEcCCCCCHHHHHHHHhcCCceecccccccccccccceecccc
Confidence                                       0012334778899999998875555556889999999999864433211  0 


Q ss_pred             -----CC---CCccccccCcCCcE-EEEEeCCCCCcCCCC--CccEEEEccCCcchhccCCchhhhhccCCCCccccCce
Q 011011          291 -----TC---NVLGSVGHPINHTE-IKIVDAETNEVLPAG--SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  359 (495)
Q Consensus       291 -----~~---~~~~~~G~p~~~~~-v~i~d~~~~~~~~~g--~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl  359 (495)
                           ..   ....+.|.+.+++. ++++|++++++++.+  +.|||+++|++++.|||++++.|++.|. ++||+|||+
T Consensus       359 ~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~-~g~~~TGDl  437 (567)
T PLN02479        359 WDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA-NGWFHSGDL  437 (567)
T ss_pred             ccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc-CCceeccee
Confidence                 00   01135677888875 889998778888764  5799999999999999999999999984 799999999


Q ss_pred             eeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHH
Q 011011          360 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  435 (495)
Q Consensus       360 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~  435 (495)
                      +++++          +|++++.||.||+|+. +|++|+|.+||.+|.+||.|.+++|++.++.    .+.++++++.+..
T Consensus       438 ~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~  506 (567)
T PLN02479        438 GVKHP----------DGYIEIKDRSKDIIIS-GGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVD  506 (567)
T ss_pred             EEEcC----------CccEEEeccccceEEe-CCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCccc
Confidence            99998          8999999999999997 8999999999999999999999999998653    5778888765310


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          436 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                 ........+++.++++++|+.++.     ++.+.+ .+.+.+.+||+
T Consensus       507 -----------~~~~~~~~~~l~~~~~~~l~~~~~-----P~~~~~-~~iP~t~~gKv  547 (567)
T PLN02479        507 -----------KSDEAALAEDIMKFCRERLPAYWV-----PKSVVF-GPLPKTATGKI  547 (567)
T ss_pred             -----------ccchhhhHHHHHHHHHhhcccccC-----CceEEe-ccCCCCCccCe
Confidence                       000123456788888888888864     455655 56777888886

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.7e-41  Score=356.98  Aligned_cols=328  Identities=27%  Similarity=0.450  Sum_probs=264.1

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhccc---CCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIV---PAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  131 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~  131 (495)
                      ..++++++++|||||||.||+|+++|+++..+.......+   ....++.++..+|++|++++.. .+..+..|++.++.
T Consensus       203 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~  282 (560)
T PRK08974        203 LVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLI  282 (560)
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEe
Confidence            5689999999999999999999999999987655433222   1234578889999999998765 34456777775553


Q ss_pred             ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                          ++..++..++++++|.+.++|+++..+.......                                          
T Consensus       283 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~------------------------------------------  320 (560)
T PRK08974        283 TNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQ------------------------------------------  320 (560)
T ss_pred             cCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcc------------------------------------------
Confidence                4677889999999999999999998775421000                                          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHcCCeeeeccCcccCcccee
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIGVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~g~~v~~~YG~TE~~~~~~  286 (495)
                                                       ...+..+|.+++||+++++.+. .+.+.+|.++++.||+||++..++
T Consensus       321 ---------------------------------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~  367 (560)
T PRK08974        321 ---------------------------------ELDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVS  367 (560)
T ss_pred             ---------------------------------cCCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceee
Confidence                                             0112234889999999998874 455567999999999999987766


Q ss_pred             ccCCC-CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          287 ARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       287 ~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      .+... ....+++|.|++++.++++|+ .+++++.|+.|||+++|+.++.||+++++.+++.| .+|||+|||++++++ 
T Consensus       368 ~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~-  444 (560)
T PRK08974        368 VNPYDLDYYSGSIGLPVPSTEIKLVDD-DGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDE-  444 (560)
T ss_pred             ccCCCCcccCCccccCcCCCEEEEECC-CCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcC-
Confidence            54432 234578999999999999995 57899999999999999999999999999999888 689999999999988 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCe----eEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~----~~a~vv~~~~~~~~~~~~  441 (495)
                               +|+++++||.+|+|++ +|.+|+|.+||++|.+||.|.+++|++.++..    +.++++...         
T Consensus       445 ---------~g~l~i~GR~~d~i~~-~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~---------  505 (560)
T PRK08974        445 ---------EGFLRIVDRKKDMILV-SGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD---------  505 (560)
T ss_pred             ---------CceEEEEecccceEEe-CCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC---------
Confidence                     7999999999999998 89999999999999999999999999986542    334444331         


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          442 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                              .....++++++++++|+.+.     .+.++.++++.+.+.+||+
T Consensus       506 --------~~~~~~~l~~~l~~~l~~~~-----~P~~~~~~~~lP~t~~GK~  544 (560)
T PRK08974        506 --------PSLTEEELITHCRRHLTGYK-----VPKLVEFRDELPKSNVGKI  544 (560)
T ss_pred             --------CCCCHHHHHHHHHhhccccc-----CCcEEEEhhhCCCCCCCcE
Confidence                    22345788889998888775     4588899999999999986

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.3e-41  Score=358.68  Aligned_cols=332  Identities=24%  Similarity=0.357  Sum_probs=254.8

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc-ccCCCCCcEEEEECChhhHHHHHHhH-hHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-IVPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~-~~~~~~~d~~l~~~p~~h~~~~~~~~-~~~~~G~~~~~~-  131 (495)
                      ...++++++++|||||||.||||++||+++......... .+++.++|++++++|++|.+++...+ .++..|+++++. 
T Consensus       172 ~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~  251 (579)
T PRK09192        172 RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLP  251 (579)
T ss_pred             CCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeC
Confidence            456789999999999999999999999999887777666 78889999999999999999987644 457788887653 


Q ss_pred             ------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011          132 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  205 (495)
Q Consensus       132 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (495)
                            ++..+++.+.+++++++.. |.++..++......    ...                                 
T Consensus       252 ~~~~~~~~~~~~~~i~~~~~t~~~~-~~~~~~l~~~~~~~----~~~---------------------------------  293 (579)
T PRK09192        252 TRDFARRPLQWLDLISRNRGTISYS-PPFGYELCARRVNS----KDL---------------------------------  293 (579)
T ss_pred             HHHHHHCHHHHHHHHHhcCcEEEeC-CcHHHHHHHHhhcc----ccc---------------------------------
Confidence                  3677889999999987665 44443333211000    000                                 


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc---C---CeeeeccCc
Q 011011          206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---G---VKVQVGYGL  278 (495)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~---g---~~v~~~YG~  278 (495)
                                                        -...+..+|.+++||+++++.+ ..+.+.+   |   ..+++.||+
T Consensus       294 ----------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~  339 (579)
T PRK09192        294 ----------------------------------AELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGL  339 (579)
T ss_pred             ----------------------------------cccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhccccccc
Confidence                                              0011223488999999999887 4444444   2   248999999


Q ss_pred             ccCccceeccCCCC----------------------------CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc
Q 011011          279 TESSPVIAARRPTC----------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG  330 (495)
Q Consensus       279 TE~~~~~~~~~~~~----------------------------~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~  330 (495)
                      ||++..++......                            ...+++|.|+|+++++|+|+ +++.++.|+.|||+++|
T Consensus       340 TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~-~~~~~~~g~~Gel~i~g  418 (579)
T PRK09192        340 AEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNE-AGMPLPERVVGHICVRG  418 (579)
T ss_pred             ccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECC-CCCCCCCCCEEEEEecC
Confidence            99976555432211                            11257899999999999995 47889999999999999


Q ss_pred             CCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcc
Q 011011          331 SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSL  410 (495)
Q Consensus       331 p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~  410 (495)
                      +.+++||+++ +.+.+.+..++||+|||+|++ +          +|+++++||.||+|++ +|++|+|.|||++|.+||.
T Consensus       419 ~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~----------~G~l~~~GR~dd~i~~-~G~~v~p~eIE~~l~~~p~  485 (579)
T PRK09192        419 PSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-L----------DGYLYITGRAKDLIII-NGRNIWPQDIEWIAEQEPE  485 (579)
T ss_pred             CchhhhhcCC-ccccccccCCceeeccceeeE-E----------CCEEEEEeccccEEEE-CCCccCHHHHHHHHHhcCC
Confidence            9999999999 678888888999999999998 6          7999999999999998 8999999999999999999


Q ss_pred             cc--eEEEEecCCC---eeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHh-HhccCCCccccEEEec-
Q 011011          411 IR--QIVVIGQDQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQIGPIHVVD-  483 (495)
Q Consensus       411 V~--~~~vvg~~~~---~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~-  483 (495)
                      |.  +|+|++.+++   .+.+++++...                ...+.+++++++++.+.. +.     .+..+.++. 
T Consensus       486 V~~~~~~v~~~~~~~~~~~~~~v~~~~~----------------~~~~~~~l~~~~~~~l~~~~~-----~~~~i~~~~~  544 (579)
T PRK09192        486 LRSGDAAAFSIAQENGEKIVLLVQCRIS----------------DEERRGQLIHALAALVRSEFG-----VEAAVELVPP  544 (579)
T ss_pred             ccCCcEEEEEeccCCCeeEEEEEEecCC----------------ChHHHHHHHHHHHHHHHHHhC-----CCceEEEeCC
Confidence            98  8999987654   45666665432                233567888888888754 44     334566665 


Q ss_pred             -CCCCCCCCee
Q 011011          484 -EPFTVNFLCL  493 (495)
Q Consensus       484 -~~~~~~~~~l  493 (495)
                       +.+.+.+||+
T Consensus       545 ~~lP~t~~GKv  555 (579)
T PRK09192        545 HSLPRTSSGKL  555 (579)
T ss_pred             CCcCCCCCcch
Confidence             6778888885

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=4.8e-41  Score=344.27  Aligned_cols=319  Identities=26%  Similarity=0.368  Sum_probs=265.7

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecc-h
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA-V  133 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~-~  133 (495)
                      ....+++++++|||||||.||+|++||+++...+......++++++|++++.+|++|++++...+.++..|+++++.+ .
T Consensus       107 ~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~  186 (436)
T TIGR01923       107 SFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF  186 (436)
T ss_pred             cCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH
Confidence            356789999999999999999999999999888888878889999999999999999999877777899999998864 4


Q ss_pred             HhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHH
Q 011011          134 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  213 (495)
Q Consensus       134 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  213 (495)
                      ..+++.++++++|.+.++|+++..+++....                                                 
T Consensus       187 ~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~-------------------------------------------------  217 (436)
T TIGR01923       187 NQLLEMIANERVTHISLVPTQLNRLLDEGGH-------------------------------------------------  217 (436)
T ss_pred             HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCC-------------------------------------------------
Confidence            5889999999999999999998877553100                                                 


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCCCC-
Q 011011          214 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-  292 (495)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-  292 (495)
                                                    ...+|.+++||+++++++.++...++..+++.||+||++.......... 
T Consensus       218 ------------------------------~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  267 (436)
T TIGR01923       218 ------------------------------NENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEML  267 (436)
T ss_pred             ------------------------------CCceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCcccc
Confidence                                          0123888999999999986666677999999999999987654333221 


Q ss_pred             CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCcc
Q 011011          293 NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR  372 (495)
Q Consensus       293 ~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~  372 (495)
                      ....++|.|++++++++.+.+.      ++.|||+++++.++.||+++++.+...+ .++||+|||++++++        
T Consensus       268 ~~~~~~G~~~~~~~~~i~~~~~------~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~--------  332 (436)
T TIGR01923       268 HARPDVGRPLAGREIKIKVDNK------EGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDG--------  332 (436)
T ss_pred             ccccCCCccCCCcEEEEEeCCC------CCceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcC--------
Confidence            1223489999999999844222      2679999999999999999888887655 579999999999998        


Q ss_pred             ccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCCCcCC
Q 011011          373 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  448 (495)
Q Consensus       373 ~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  448 (495)
                        +|.+++.||.+|+++. +|++|++.+||.++.++|.|.+++|++.++.    .+.+++++..                
T Consensus       333 --dg~~~~~GR~~d~i~~-~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~----------------  393 (436)
T TIGR01923       333 --EGFLYVLGRRDDLIIS-GGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSES----------------  393 (436)
T ss_pred             --CCCEEEeccccCeEEe-CCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECC----------------
Confidence              8999999999999997 8999999999999999999999999998653    3557777652                


Q ss_pred             ccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          449 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       449 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                        ..+.+++.+++++.|+.++     .+.+|..+++.+.+.+||+
T Consensus       394 --~~~~~~l~~~l~~~l~~~~-----~p~~i~~~~~iP~t~~GK~  431 (436)
T TIGR01923       394 --DISQAKLIAYLTEKLAKYK-----VPIAFEKLDELPYNASGKI  431 (436)
T ss_pred             --CCCHHHHHHHHHHhhhCCC-----CCeEEEEecCCCCCCCCce
Confidence              2456789999999998886     4478999999999999987

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-41  Score=354.08  Aligned_cols=333  Identities=22%  Similarity=0.309  Sum_probs=264.7

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHH------HHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEe
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI------RSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY  130 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~------~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~  130 (495)
                      ..++.++++|||||||.||+|+++|.++....      ...........++++++.+|++|.+++...+.++..|+++++
T Consensus       138 ~~~~~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~  217 (502)
T PRK08276        138 DETAGADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVV  217 (502)
T ss_pred             CCCcceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEE
Confidence            45678999999999999999999887754221      112222223567899999999999998887778889998887


Q ss_pred             c---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          131 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       131 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                      .   ++..+++.++++++|++.++|+++..++........                                        
T Consensus       218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------------------------  257 (502)
T PRK08276        218 MEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRA----------------------------------------  257 (502)
T ss_pred             cCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCC----------------------------------------
Confidence            5   588999999999999999999998877643111000                                        


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHH-HHHHcCCeeeeccCcccCcccee
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~  286 (495)
                                                       .-.+..+|.+++||++++.++.+ +.+.++..+++.||+||++.++.
T Consensus       258 ---------------------------------~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~  304 (502)
T PRK08276        258 ---------------------------------RYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTV  304 (502)
T ss_pred             ---------------------------------CCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeE
Confidence                                             00123458999999999999844 44557888999999999987554


Q ss_pred             ccCCC-CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          287 ARRPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       287 ~~~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      ..... ....+++|.|+ ++.++++|+ ++++++.|+.|||+++|+.++.||+++++.+++.+..++||+|||++++++ 
T Consensus       305 ~~~~~~~~~~~~~G~~~-~~~~~i~d~-~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~-  381 (502)
T PRK08276        305 ITSEDWLAHPGSVGKAV-LGEVRILDE-DGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDE-  381 (502)
T ss_pred             ecCccccccCCCcceec-ccEEEEECC-CCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcC-
Confidence            43322 24557899999 889999995 578999999999999999999999999999999998789999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~  441 (495)
                               +|.+++.||.||+++. +|.+|++.+||.++.++|.|.+|+|++..++    .+.++|++....       
T Consensus       382 ---------~g~~~~~GR~~~~i~~-~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-------  444 (502)
T PRK08276        382 ---------DGYLYLTDRKSDMIIS-GGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGA-------  444 (502)
T ss_pred             ---------CcCEEEeccCcceEEe-CCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCC-------
Confidence                     8999999999999997 9999999999999999999999999998653    577888876420       


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          442 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                            .......+++++.++++|..++     .++.+..+++.+.+.+||+
T Consensus       445 ------~~~~~~~~~i~~~~~~~l~~~~-----~p~~i~~~~~lP~t~~GKi  485 (502)
T PRK08276        445 ------DAGDALAAELIAWLRGRLAHYK-----CPRSIDFEDELPRTPTGKL  485 (502)
T ss_pred             ------CCChhhHHHHHHHHHhhccCCC-----CCcEEEEecCCCCCcccch
Confidence                  0011123456777777776654     5688999999999999986

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.6e-41  Score=352.19  Aligned_cols=331  Identities=20%  Similarity=0.262  Sum_probs=264.5

Q ss_pred             CCCEEEEEeCCCCCCCchhhhh--chHHHHH---HHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec-
Q 011011           58 SDDIATYVYTSGTTGNPKGVML--THKNLLH---QIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  131 (495)
Q Consensus        58 ~~d~a~i~~TSGTTG~PK~v~~--th~~l~~---~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-  131 (495)
                      .++.++++|||||||.||+|++  +|.++..   ........+++.+++++++.+|++|.+++...+..+..|+++++. 
T Consensus       153 ~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~  232 (511)
T PRK13391        153 ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVME  232 (511)
T ss_pred             cccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECC
Confidence            3467899999999999999995  4665432   223344556778899999999999999988777788888888874 


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..+++.++++++|.+.++|+++..+.........                                          
T Consensus       233 ~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~------------------------------------------  270 (511)
T PRK13391        233 HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRD------------------------------------------  270 (511)
T ss_pred             CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcc------------------------------------------
Confidence              688999999999999999999998776542111000                                          


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHH-HHHHcCCeeeeccCcccCccceecc
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~-~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                     ...+..+|.+++||+++++++.+ +.+.+|..+++.||+||++.+....
T Consensus       271 -------------------------------~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~  319 (511)
T PRK13391        271 -------------------------------KYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACD  319 (511)
T ss_pred             -------------------------------cCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEec
Confidence                                           00123458899999999998844 4455798999999999998765543


Q ss_pred             CCC-CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCC-CccccCceeeeccCC
Q 011011          289 RPT-CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-GWLNTGDIGWIAPHH  366 (495)
Q Consensus       289 ~~~-~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~-~~~~TGDl~~~~~~~  366 (495)
                      ... ....+++|.|.++ .++++| +++++++.|+.|||+++|+ ++.||+++++.+++.+..+ +||+|||+|++++  
T Consensus       320 ~~~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~--  394 (511)
T PRK13391        320 SEEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDE--  394 (511)
T ss_pred             CccccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECC--
Confidence            322 2456789999999 689999 5588899999999999999 8899999999999988655 9999999999998  


Q ss_pred             CCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHc
Q 011011          367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRL  442 (495)
Q Consensus       367 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~  442 (495)
                              +|.+++.||.||+++. +|++|+|.+||+++.+||.|.+|+|++.++.    .+.+++++..+.        
T Consensus       395 --------~g~l~~~gR~~~~i~~-~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~--------  457 (511)
T PRK13391        395 --------DGYLYLTDRAAFMIIS-GGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGV--------  457 (511)
T ss_pred             --------CccEEEeccCCCEEEe-CCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCC--------
Confidence                    8999999999999997 8999999999999999999999999988653    355677765320        


Q ss_pred             CCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          443 SIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       443 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                           .......+++.++++++++.++     .++.|..+++.+.+.+||+
T Consensus       458 -----~~~~~~~~~l~~~~~~~l~~~~-----~P~~i~~~~~~P~t~~gKv  498 (511)
T PRK13391        458 -----DPGPALAAELIAFCRQRLSRQK-----CPRSIDFEDELPRLPTGKL  498 (511)
T ss_pred             -----CcccchHHHHHHHHHhhcccCc-----CCcEEEEeecCCCCCccce
Confidence                 0012234778888888888876     5589999999999999987

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.7e-41  Score=352.99  Aligned_cols=329  Identities=24%  Similarity=0.341  Sum_probs=255.7

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhH-hhcCceEEe--cch
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY--TAV  133 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~-~~~G~~~~~--~~~  133 (495)
                      +.+++++++|||||||.||||+++|+++..........+++..+++.++.+|++|.+++...+.. +..|..++.  .++
T Consensus       180 ~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~  259 (545)
T PRK08162        180 DEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDP  259 (545)
T ss_pred             CCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHccEEEEeCCCCH
Confidence            34689999999999999999999999876655544445667788999999999999998765544 444444444  368


Q ss_pred             HhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHH
Q 011011          134 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI  213 (495)
Q Consensus       134 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  213 (495)
                      ..+++.++++++|++.++|+++..|++......                                               
T Consensus       260 ~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------------------  292 (545)
T PRK08162        260 KLIFDLIREHGVTHYCGAPIVLSALINAPAEWR-----------------------------------------------  292 (545)
T ss_pred             HHHHHHHHHcCCeEEEechHHHHHHHhCccccc-----------------------------------------------
Confidence            999999999999999999999988765311100                                               


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCCCC-
Q 011011          214 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTC-  292 (495)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-  292 (495)
                                                  ..+...+.++++|+.+++.+.+.++.++.++++.||+||+++.+..+.... 
T Consensus       293 ----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~  344 (545)
T PRK08162        293 ----------------------------AGIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPE  344 (545)
T ss_pred             ----------------------------cCCccceEEEECCCCCCHHHHHHHHHhCCceeecccccccCcceeecccccc
Confidence                                        001112456788888888876666667999999999999865444321110 


Q ss_pred             ----------CCccccccCcCC-cEEEEEeCCCCCcCCC-C-CccEEEEccCCcchhccCCchhhhhccCCCCccccCce
Q 011011          293 ----------NVLGSVGHPINH-TEIKIVDAETNEVLPA-G-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDI  359 (495)
Q Consensus       293 ----------~~~~~~G~p~~~-~~v~i~d~~~~~~~~~-g-~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl  359 (495)
                                ...++.|.+.+. ..++++|++++++++. | +.|||+++|+.++.||+++++.+...| .++||+|||+
T Consensus       345 ~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl  423 (545)
T PRK08162        345 WDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDL  423 (545)
T ss_pred             cccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCce
Confidence                      112455666553 4578899878888876 3 469999999999999999999999988 4789999999


Q ss_pred             eeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHH
Q 011011          360 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEV  435 (495)
Q Consensus       360 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~  435 (495)
                      +++++          +|+++++||.||+|+. +|.+|+|.+||+.|.+||.|.+++|++.++.    .+.+++++..+  
T Consensus       424 ~~~d~----------dg~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~--  490 (545)
T PRK08162        424 AVLHP----------DGYIKIKDRSKDIIIS-GGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDG--  490 (545)
T ss_pred             EEEcC----------CccEEEEecccceEEe-CCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCC--
Confidence            99998          8999999999999996 8999999999999999999999999997643    46677776643  


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCeec
Q 011011          436 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCLA  494 (495)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  494 (495)
                                    ...+.+++++++++.|+.+..|     +.+.+ .+.+...|||+.
T Consensus       491 --------------~~~~~~~l~~~~~~~l~~~~~P-----~~~~~-~~iP~t~~gK~~  529 (545)
T PRK08162        491 --------------ASATEEEIIAHCREHLAGFKVP-----KAVVF-GELPKTSTGKIQ  529 (545)
T ss_pred             --------------CCCCHHHHHHHHHHhcccccCC-----cEEEe-cccCCCCCcCCc
Confidence                          2346788999999999888644     55654 567788888863

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5e-40  Score=346.28  Aligned_cols=337  Identities=23%  Similarity=0.341  Sum_probs=251.3

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCC-cEEEEECChhhHHHHHHhH-hHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG-DKFLSMLPPWHVYERACGY-FIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~-d~~l~~~p~~h~~~~~~~~-~~~~~G~~~~~~-  131 (495)
                      ...++++++++|||||||.||+|++||+++...+..+...+++.++ |++++++|++|.+++...+ .++..|++++.. 
T Consensus       148 ~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~  227 (545)
T PRK07768        148 ETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVT  227 (545)
T ss_pred             CCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeC
Confidence            4568999999999999999999999999998887777777777776 8999999999999987644 458888888764 


Q ss_pred             ------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011          132 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  205 (495)
Q Consensus       132 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (495)
                            ++..+...+++++++++...|..+..+...+......                                     
T Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------------------------  270 (545)
T PRK07768        228 PMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP-------------------------------------  270 (545)
T ss_pred             HHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc-------------------------------------
Confidence                  4556788899999999877776665544322110000                                     


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHH-HHH---HcCC---eeeeccCc
Q 011011          206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYE---AIGV---KVQVGYGL  278 (495)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~-~~~---~~g~---~v~~~YG~  278 (495)
                                                        -...+..+|.+++||+++++...+ +.+   .+|.   .+++.||+
T Consensus       271 ----------------------------------~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~  316 (545)
T PRK07768        271 ----------------------------------GAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGM  316 (545)
T ss_pred             ----------------------------------cCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence                                              001122348999999999988744 433   2555   49999999


Q ss_pred             ccCccceeccCCC--------------------------CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCC
Q 011011          279 TESSPVIAARRPT--------------------------CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQ  332 (495)
Q Consensus       279 TE~~~~~~~~~~~--------------------------~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~  332 (495)
                      ||++..++.....                          ....+++|+|+++++++++| +.++++++|+.|||+++|+.
T Consensus       317 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~  395 (545)
T PRK07768        317 AEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGES  395 (545)
T ss_pred             cccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccCc
Confidence            9998755432211                          12346799999999999999 55789999999999999999


Q ss_pred             cchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccc
Q 011011          333 VMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR  412 (495)
Q Consensus       333 ~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~  412 (495)
                      ++.||++++... ..+..++||+|||++++++          +|+++++||.||+|++ +|.+|+|.+||+.+.+||.|.
T Consensus       396 ~~~gy~~~~~~~-~~~~~~g~~~TGDl~~~~~----------~g~l~~~GR~~d~i~~-~G~~v~~~eiE~~l~~~~~v~  463 (545)
T PRK07768        396 VTPGYLTMDGFI-PAQDADGWLDTGDLGYLTE----------EGEVVVCGRVKDVIIM-AGRNIYPTDIERAAARVEGVR  463 (545)
T ss_pred             ccccccCCCCCc-ccccCCCeeeccceEEEec----------CCEEEEEccccceEEE-CCEecCHHHHHHHHHhCcccc
Confidence            999999865443 3444678999999999998          8999999999999998 899999999999999999999


Q ss_pred             eEEEEecC--CC----eeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEec--C
Q 011011          413 QIVVIGQD--QR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--E  484 (495)
Q Consensus       413 ~~~vvg~~--~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~  484 (495)
                      +++|++.+  +.    ...+++.....               .......++.+.+++.+......   .+.++.+++  +
T Consensus       464 ~~~vv~~~~~~~~~~~~~~~~v~~~~~---------------~~~~~~~~l~~~~~~~l~~~~~~---~p~~v~~v~~~~  525 (545)
T PRK07768        464 PGNAVAVRLDAGHSREGFAVAVESNAF---------------EDPAEVRRIRHQVAHEVVAEVGV---RPRNVVVLGPGS  525 (545)
T ss_pred             cceEEEEEecCCCCceEEEEEEEeccc---------------ccHHHHHHHHHHHHHHHHHHhCC---CccEEEEeCCCc
Confidence            98777642  22    23333333211               01112235666777776655322   567888887  6


Q ss_pred             CCCCCCCee
Q 011011          485 PFTVNFLCL  493 (495)
Q Consensus       485 ~~~~~~~~l  493 (495)
                      .+...+||+
T Consensus       526 lP~t~~GKi  534 (545)
T PRK07768        526 IPKTPSGKL  534 (545)
T ss_pred             CCCCCchhH
Confidence            777888886

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.9e-40  Score=347.60  Aligned_cols=339  Identities=23%  Similarity=0.315  Sum_probs=240.6

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc-ccC-----CCCCcEEEEECChhhHHHHHH-hHhHhhcCce
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD-IVP-----AENGDKFLSMLPPWHVYERAC-GYFIFSRGIE  127 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~-~~~-----~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~  127 (495)
                      ...++|+++++|||||||.||||++||+++..++..... .+.     ...++++++++|++|.+++.. .+.++..|++
T Consensus       156 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~  235 (578)
T PRK05850        156 PRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCP  235 (578)
T ss_pred             CCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCc
Confidence            356799999999999999999999999999876655432 222     345789999999999999876 4556889998


Q ss_pred             EEec-------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccc
Q 011011          128 LMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLT  200 (495)
Q Consensus       128 ~~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (495)
                      +++.       ++..+++.+++++++. ..+|..+..+.......    ..+                            
T Consensus       236 ~~~~~~~~~~~~p~~~~~~i~~~~~~~-~~~p~~~~~~~~~~~~~----~~~----------------------------  282 (578)
T PRK05850        236 AVLTSPVAFLQRPARWMQLLASNPHAF-SAAPNFAFELAVRKTSD----DDM----------------------------  282 (578)
T ss_pred             EEEeCHHHHHHCHHHHHHHHHHcCCeE-EeCCcHHHHHHHHhcch----hhh----------------------------
Confidence            8775       3677888999999874 46776654332210000    000                            


Q ss_pred             cCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc---C---Ceee
Q 011011          201 RNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI---G---VKVQ  273 (495)
Q Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~---g---~~v~  273 (495)
                                                             ....+..+|.+++||+++++.+ .++.+.+   +   ..++
T Consensus       283 ---------------------------------------~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (578)
T PRK05850        283 ---------------------------------------AGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIR  323 (578)
T ss_pred             ---------------------------------------cCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCccccc
Confidence                                                   0001123488999999999887 4555554   3   3689


Q ss_pred             eccCcccCccceeccCCCCC-------------------------CccccccCcCCcEEEEEeCCCCCcCCCCCccEEEE
Q 011011          274 VGYGLTESSPVIAARRPTCN-------------------------VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKV  328 (495)
Q Consensus       274 ~~YG~TE~~~~~~~~~~~~~-------------------------~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v  328 (495)
                      +.||+||++..+........                         ...++|.|. +.+++++|++++.+++.|+.|||++
T Consensus       324 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v  402 (578)
T PRK05850        324 PSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWV  402 (578)
T ss_pred             CccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEE
Confidence            99999998754433211100                         011334443 5789999988888999999999999


Q ss_pred             ccCCcchhccCCchhhhhccC-----------CCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeec
Q 011011          329 RGSQVMQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  397 (495)
Q Consensus       329 ~~p~~~~gY~~~~~~t~~~~~-----------~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  397 (495)
                      +|+.++.||+++|+.|++.|.           .++||+|||+|+++           +|++++.||+||+|++ +|++|+
T Consensus       403 ~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-----------~G~l~~~GR~~d~i~~-~G~~i~  470 (578)
T PRK05850        403 HGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-----------EGELFIVGRIKDLLIV-DGRNHY  470 (578)
T ss_pred             ecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-----------CCEEEEEcccccEEEE-CCeecC
Confidence            999999999999999999884           25799999999886           4999999999999998 899999


Q ss_pred             chHHHHHHhcCcccceEEEEecCC---CeeEEEEecChHHHHHHHHHcCCCcCCcccc-ChHHHHHHHHHHHHhHhccCC
Q 011011          398 PLELEEAALRSSLIRQIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADASEL-SKEKTISLLYGELRKWTSKCS  473 (495)
Q Consensus       398 ~~~IE~~l~~~p~V~~~~vvg~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~~~  473 (495)
                      |.|||++|.+||.+ +++|++.++   +.+.++|++++...           ...... ...++++.+...+..+.   .
T Consensus       471 p~eIE~~l~~~~~~-~~~v~~v~~~~~~~~~a~v~~~~~~~-----------~~~~~~~~~~~l~~~v~~~l~~~~---~  535 (578)
T PRK05850        471 PDDIEATIQEITGG-RVAAISVPDDGTEKLVAIIELKKRGD-----------SDEEAMDRLRTVKREVTSAISKSH---G  535 (578)
T ss_pred             HHHHHHHHHHhcCC-cEEEEEecCCCceEEEEEEEeccccC-----------cchhhhhhHHHHHHHHHHHHHHHh---C
Confidence            99999999999986 477777764   35778887764300           000000 12334444444444332   1


Q ss_pred             CccccEEEec--CCCCCCCCee
Q 011011          474 FQIGPIHVVD--EPFTVNFLCL  493 (495)
Q Consensus       474 ~~~~~~~~~~--~~~~~~~~~l  493 (495)
                      ..+..+.++.  +.+.+.+||+
T Consensus       536 ~~~~~~~~~~~~~iP~t~~GKi  557 (578)
T PRK05850        536 LSVADLVLVAPGSIPITTSGKI  557 (578)
T ss_pred             CCceEEEEeCCCCcCCCCCchH
Confidence            2456677775  6778888886

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=7.8e-40  Score=332.25  Aligned_cols=271  Identities=25%  Similarity=0.357  Sum_probs=234.2

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecc---
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---  132 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~---  132 (495)
                      ..++++++++|||||||.||+|.+||+++..........+++.++|++++.+|++|.+++...+.++..|+++++.+   
T Consensus       117 ~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~  196 (408)
T TIGR01733       117 SGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDE  196 (408)
T ss_pred             CCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhh
Confidence            45799999999999999999999999999988888877888889999999999999999888888899999888742   


Q ss_pred             ---hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          133 ---VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       133 ---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                         +..+.+.+++++++.+.++|.+++.+.+...                                              
T Consensus       197 ~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~----------------------------------------------  230 (408)
T TIGR01733       197 ERDAALLAALIAEHPVTVLNLTPSLLALLAAALP----------------------------------------------  230 (408)
T ss_pred             ccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh----------------------------------------------
Confidence               5678888999999999999999988766421                                              


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcC-CeeeeccCcccCccceec
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~  287 (495)
                                                      ..+..+|.+++||+++++.+ +.+.+.++ +.+++.||+||++..+..
T Consensus       231 --------------------------------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~  278 (408)
T TIGR01733       231 --------------------------------PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTA  278 (408)
T ss_pred             --------------------------------hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEE
Confidence                                            11233489999999999987 55666776 899999999999877653


Q ss_pred             cCCCC---C--CccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCC------C--cc
Q 011011          288 RRPTC---N--VLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED------G--WL  354 (495)
Q Consensus       288 ~~~~~---~--~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~------~--~~  354 (495)
                      .....   .  ...++|.|+++++++|+|++ ++++++|+.|||++++++++.||+++++.|.+.|..+      +  ||
T Consensus       279 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~  357 (408)
T TIGR01733       279 TLVDADDAPRESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLY  357 (408)
T ss_pred             EEcCccccCCccccccCcccCCceEEEECCC-CCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEE
Confidence            22111   1  26789999999999999977 8899999999999999999999999999999887543      2  99


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEE
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVV  416 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~v  416 (495)
                      +|||++++++          +|++++.||.||+|+. +|++|+|.+||+++..||.|.+|+|
T Consensus       358 ~TGDl~~~d~----------~g~~~~~gR~~~~i~~-~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       358 RTGDLVRYLP----------DGNLEFLGRIDDQVKI-RGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             ECCceEEEcC----------CCCEEEeeccCCEEEe-CeEEechHHHHHHHhcCcchhhhcC
Confidence            9999999998          8999999999999997 8999999999999999999999875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.1e-39  Score=337.71  Aligned_cols=325  Identities=18%  Similarity=0.204  Sum_probs=254.7

Q ss_pred             CCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcc---------cCC------CCCcEEEEECChhhHHHHHHhHhHhh
Q 011011           59 DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---------VPA------ENGDKFLSMLPPWHVYERACGYFIFS  123 (495)
Q Consensus        59 ~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~---------~~~------~~~d~~l~~~p~~h~~~~~~~~~~~~  123 (495)
                      +|.++++|||||||.||+|++||+++..........         ..+      ..+++++..+|++|.+++...+.++.
T Consensus       163 ~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~l~  242 (533)
T PRK07798        163 PDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAFAALF  242 (533)
T ss_pred             CCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHHHHHHHh
Confidence            345689999999999999999999987544332111         111      56789999999999999987888899


Q ss_pred             cCceEEecc-----hHhHHHHHhHhCCcEEEeCchHHHHHH-HHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhcc
Q 011011          124 RGIELMYTA-----VRNLKDDLQRYQPHYMISVPLVYETLY-SGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGF  197 (495)
Q Consensus       124 ~G~~~~~~~-----~~~~~~~i~~~~~t~~~~~P~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (495)
                      .|+++++.+     +..+++.++++++|.+..+|..+...+ .....                                 
T Consensus       243 ~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~---------------------------------  289 (533)
T PRK07798        243 SGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEA---------------------------------  289 (533)
T ss_pred             cCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcc---------------------------------
Confidence            999998864     788999999999999999987764322 21110                                 


Q ss_pred             ccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHc-CCeeeec
Q 011011          198 CLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVG  275 (495)
Q Consensus       198 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~-g~~v~~~  275 (495)
                                                               .....+..+|.+++||+++++.+. .+.+.+ +..+++.
T Consensus       290 -----------------------------------------~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~  328 (533)
T PRK07798        290 -----------------------------------------RGPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDS  328 (533)
T ss_pred             -----------------------------------------cccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEee
Confidence                                                     000122345899999999999874 445556 7899999


Q ss_pred             cCcccCccceeccCCCCCCccccc--cCcCCcEEEEEeCCCCCcCCCCCc--cEEEEccCCcchhccCCchhhhhccCC-
Q 011011          276 YGLTESSPVIAARRPTCNVLGSVG--HPINHTEIKIVDAETNEVLPAGSK--GIVKVRGSQVMQGYFKNPSATKQALDE-  350 (495)
Q Consensus       276 YG~TE~~~~~~~~~~~~~~~~~~G--~p~~~~~v~i~d~~~~~~~~~g~~--GEl~v~~p~~~~gY~~~~~~t~~~~~~-  350 (495)
                      ||+||++..........  ....|  .+.++..++++|++ +++++.|+.  |+++. ++.++.||+++++.|++.|.. 
T Consensus       329 YG~tE~~~~~~~~~~~~--~~~~g~~~~~~~~~~~i~~~~-~~~~~~g~~~~g~l~~-~~~~~~gy~~~~~~t~~~f~~~  404 (533)
T PRK07798        329 IGSSETGFGGSGTVAKG--AVHTGGPRFTIGPRTVVLDED-GNPVEPGSGEIGWIAR-RGHIPLGYYKDPEKTAETFPTI  404 (533)
T ss_pred             ecccccccccccCCCCC--CccCCCCccCCCceEEEECCC-CCCCCCCCCCeeEEEe-ecCccccccCChhhhHHhhccC
Confidence            99999865544322211  12333  78889999999965 668899887  76665 568999999999999988853 


Q ss_pred             --CCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----ee
Q 011011          351 --DGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RP  424 (495)
Q Consensus       351 --~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~  424 (495)
                        ++||+|||++++++          +|++++.||.||+|+. +|++|+|.+||+++.++|.|.+++|++.+++    .+
T Consensus       405 ~~~~~~~TGD~~~~~~----------~g~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~  473 (533)
T PRK07798        405 DGVRYAIPGDRARVEA----------DGTITLLGRGSVCINT-GGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEV  473 (533)
T ss_pred             CCCceEEcCcEEEEcC----------CCcEEEEccccceEec-CCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceE
Confidence              36999999999998          8999999999999996 8999999999999999999999999997653    46


Q ss_pred             EEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          425 GAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       425 ~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      .++++++++                ...+.+++.+++++.|+.+.     .++.+..+++.+.+.+||+
T Consensus       474 ~~~v~~~~~----------------~~~~~~~l~~~l~~~l~~~~-----~P~~i~~~~~iP~t~~GK~  521 (533)
T PRK07798        474 VAVVQLREG----------------ARPDLAELRAHCRSSLAGYK-----VPRAIWFVDEVQRSPAGKA  521 (533)
T ss_pred             EEEEEECCC----------------CCCCHHHHHHHHhhhcccCC-----CCeEEEEcccCCCCCcchh
Confidence            677776543                33467889999999888775     5578999999999999986

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-39  Score=330.01  Aligned_cols=298  Identities=21%  Similarity=0.248  Sum_probs=244.7

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~--  131 (495)
                      ...++++++++|||||||.||+|++||+++......+...++...+|+.+..+|++|.+++.. .+.++..|+++++.  
T Consensus        97 ~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~  176 (414)
T PRK08308         97 NYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITN  176 (414)
T ss_pred             CCCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCC
Confidence            346789999999999999999999999999888887777788888999999999999999865 45568899988774  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.+++++++++.++|+++..+.+....                                              
T Consensus       177 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------------------  210 (414)
T PRK08308        177 KNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----------------------------------------------  210 (414)
T ss_pred             CCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----------------------------------------------
Confidence             688899999999999999999999877542100                                              


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                      . ..++.+++||+++++.+...++..+.++++.||+||++.+...  .
T Consensus       211 --------------------------------~-~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~--~  255 (414)
T PRK08308        211 --------------------------------T-FQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSIC--P  255 (414)
T ss_pred             --------------------------------c-ccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeec--C
Confidence                                            0 0126778899999988755555456789999999999864432  1


Q ss_pred             CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCC
Q 011011          291 TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR  370 (495)
Q Consensus       291 ~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~  370 (495)
                      .....+++|+|++++++++.+.       .|+.|||++++                   .++||+|||+|++++      
T Consensus       256 ~~~~~~~~G~p~~~~~~~~~~~-------~~~~gel~v~~-------------------~~~~~~TGDl~~~~~------  303 (414)
T PRK08308        256 DMKSHLDLGNPLPHVSVSAGSD-------ENAPEEIVVKM-------------------GDKEIFTKDLGYKSE------  303 (414)
T ss_pred             CCCCCCccCccCCCeEEEEecC-------CCCCceEEEEc-------------------CCceEECCceEEECC------
Confidence            2234578999999999998752       35679999973                   267999999999998      


Q ss_pred             ccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCCCc
Q 011011          371 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVH  446 (495)
Q Consensus       371 ~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~  446 (495)
                          +|+++++||.||+|++ +|++|+|.+||+++.++|.|.+|+|++.+++    .+.++++..               
T Consensus       304 ----dg~l~~~GR~~~~ik~-~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~---------------  363 (414)
T PRK08308        304 ----RGTLHFMGRMDDVINV-SGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISH---------------  363 (414)
T ss_pred             ----CccEEEecccCCeEEE-CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeC---------------
Confidence                8999999999999998 8999999999999999999999999988754    455666654               


Q ss_pred             CCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          447 ADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       447 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                         ...+.++++++++++|+.++.     +.++..+++.+.+.+||+
T Consensus       364 ---~~~~~~~l~~~l~~~l~~~~~-----P~~i~~v~~iP~t~~GKi  402 (414)
T PRK08308        364 ---EEIDPVQLREWCIQHLAPYQV-----PHEIESVTEIPKNANGKV  402 (414)
T ss_pred             ---CCCCHHHHHHHHHHhCccccC-----CcEEEEeccCCCCCCcCe
Confidence               234567899999999998864     478999999999999987

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-39  Score=358.59  Aligned_cols=319  Identities=14%  Similarity=0.124  Sum_probs=243.7

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhH-hhcCceEEec---c
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMYT---A  132 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~-~~~G~~~~~~---~  132 (495)
                      .++|+++|+|| ||||.||++.++|.++..........+++.++|++++.+|++|.+++...+.+ +..|.++++.   +
T Consensus       604 ~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~  682 (994)
T PRK07868        604 LARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLD  682 (994)
T ss_pred             CCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCC
Confidence            46899999999 57777787778887765444444455678899999999999999998775554 5666666553   6


Q ss_pred             hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHH
Q 011011          133 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  212 (495)
Q Consensus       133 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  212 (495)
                      +..+++.|+++++|++.++|+++..++......                                               
T Consensus       683 ~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~-----------------------------------------------  715 (994)
T PRK07868        683 PDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFV-----------------------------------------------  715 (994)
T ss_pred             HHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCc-----------------------------------------------
Confidence            889999999999999999999998776521000                                               


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcC-CeeeeccCcccCccceeccCC
Q 011011          213 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG-VKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                  ...+.++|.++ || .+++.+ +++.+.++ +++++.||+||++.... .. 
T Consensus       716 ----------------------------~~~~~slr~~~-g~-gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~-  763 (994)
T PRK07868        716 ----------------------------LHGNHPVRLFI-GS-GMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NV-  763 (994)
T ss_pred             ----------------------------cCCCCceEEEe-cC-CCCHHHHHHHHHHhCchheeeeeeccccccccc-cc-
Confidence                                        01122346655 33 377776 66677775 78999999999875433 22 


Q ss_pred             CCCCccccccCcCCc-EEEEE--eC--------CCC--CcCCCCCccEEEEccCCcchhccCCchhhh--hccC-CCCcc
Q 011011          291 TCNVLGSVGHPINHT-EIKIV--DA--------ETN--EVLPAGSKGIVKVRGSQVMQGYFKNPSATK--QALD-EDGWL  354 (495)
Q Consensus       291 ~~~~~~~~G~p~~~~-~v~i~--d~--------~~~--~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~--~~~~-~~~~~  354 (495)
                      .....+++|+|++++ +++|.  |+        +.|  +.++.|+.|||+++++..    + ||+.+.  ..|. .+|||
T Consensus       764 ~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~  838 (994)
T PRK07868        764 SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWI  838 (994)
T ss_pred             CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEE
Confidence            224567999999997 66664  21        234  567889999999998853    3 454433  2343 48999


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC---eeEEEEecC
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR---RPGAIIVPD  431 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~---~~~a~vv~~  431 (495)
                      +|||+|++++          ||+|+|+||+||+||+ +|.+|+|.|||++|.+||.|.+|+|++.+++   .+.|+|+++
T Consensus       839 ~TGDlg~~d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~  907 (994)
T PRK07868        839 STEYLFRRDD----------DGDYWLVDRRGSVIRT-ARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLR  907 (994)
T ss_pred             eccceEEEcC----------CCCEEEeccCCCEEEe-CCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeC
Confidence            9999999999          8999999999999998 7889999999999999999999999998753   577888876


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          432 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ++                ...+.++|++++++ |+.|+     .++.|.++++.+.+.|||+
T Consensus       908 ~~----------------~~~~~~~L~~~l~~-l~~y~-----vP~~i~~v~~lP~T~sGKi  947 (994)
T PRK07868        908 PG----------------AAITAADLTEALAS-LPVGL-----GPDIVHVVPEIPLSATYRP  947 (994)
T ss_pred             CC----------------CcCCHHHHHHHHHh-CCCCc-----CCeEEEEeCCCCCCccccE
Confidence            43                34567889999985 77776     4589999999999999886

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=1.5e-39  Score=331.25  Aligned_cols=251  Identities=35%  Similarity=0.587  Sum_probs=207.8

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh--cccCCCCCcEEEEECChhhHHHH-HHhHhHhhcCceEEecc-
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--DIVPAENGDKFLSMLPPWHVYER-ACGYFIFSRGIELMYTA-  132 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~--~~~~~~~~d~~l~~~p~~h~~~~-~~~~~~~~~G~~~~~~~-  132 (495)
                      .++++++++|||||||.||+|.+||+++++.+..+.  ..++++  |++++++|++|.+++ ...+.++..|+++++.+ 
T Consensus       153 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  230 (417)
T PF00501_consen  153 SPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSP  230 (417)
T ss_dssp             TTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESS
T ss_pred             CccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeecccccccccccccccccccccccccccc
Confidence            579999999999999999999999999988776653  223333  699999999999999 55777899999999864 


Q ss_pred             -----hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          133 -----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       133 -----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                           ++.+++.+++++++.+.++|+++..+++ ..+....                                       
T Consensus       231 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~-~~~~~~~---------------------------------------  270 (417)
T PF00501_consen  231 FDLFDPESLLELISRYKPTILFAVPSMLEALLQ-SPEEKTK---------------------------------------  270 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHH-HHHTTHH---------------------------------------
T ss_pred             ccccccccchhcccccccccccccccccccccc-ccccccc---------------------------------------
Confidence                 3557899999999999999999998866 2211000                                       


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCC-eeeeccCcccCccce
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVI  285 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~  285 (495)
                                                     .....++.+|.+++||++++++. +.+.+.++. ++++.||+||++.++
T Consensus       271 -------------------------------~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~  319 (417)
T PF00501_consen  271 -------------------------------ISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIA  319 (417)
T ss_dssp             -------------------------------GTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEE
T ss_pred             -------------------------------ccccccccccccccccccCChhhccccccccccccceecccccccceee
Confidence                                           00013344599999999999997 455566776 899999999999888


Q ss_pred             eccC--CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeec
Q 011011          286 AARR--PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA  363 (495)
Q Consensus       286 ~~~~--~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~  363 (495)
                      ....  ......+++|.|+++++++|+|+++++++++|+.|||+++||.++.||+++|+.+++.|.++|||+|||+|+++
T Consensus       320 ~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d  399 (417)
T PF00501_consen  320 TIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLD  399 (417)
T ss_dssp             EEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEE
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccceecceEEEEC
Confidence            7552  22246788999999999999999889999999999999999999999999999999999866899999999999


Q ss_pred             cCCCCCCccccCCeEEEEccccceEEe
Q 011011          364 PHHSRGRSRRCGGVLVLEGRAKDTIVL  390 (495)
Q Consensus       364 ~~~~~~~~~~~~G~l~i~GR~~d~i~~  390 (495)
                      +          +|+++++||.||+||+
T Consensus       400 ~----------~G~~~~~GR~~~~i~~  416 (417)
T PF00501_consen  400 E----------DGYLYILGRSDDMIKV  416 (417)
T ss_dssp             T----------TSEEEEEEEGSCEEEE
T ss_pred             C----------CCeEEEEEeeCCEEEe
Confidence            8          8999999999999986

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=1.1e-35  Score=302.72  Aligned_cols=312  Identities=20%  Similarity=0.224  Sum_probs=223.5

Q ss_pred             HHHHHHhchhhhcccCCcchhhccccc--CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHh---hcccCCCCCc
Q 011011           27 YDEIIDLGRESRKAFSDSNDARKHYKY--ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGD  101 (495)
Q Consensus        27 ~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~---~~~~~~~~~d  101 (495)
                      .+++.+.++...+|+.+|.+.++++++  ...+++++++++|||||||.||++.+||.++.......   ...+++.++|
T Consensus        41 ~~~i~~~~dl~~lP~~~K~~l~~~~~~~~~~~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d  120 (422)
T TIGR02155        41 PDDLQSLSDLAKFPFTQKHDLRDNYPFGLFAVPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGD  120 (422)
T ss_pred             hhhCCCHHHHHHCCCCcHHHHhhcCCCcccCCChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            455666666677899999998877653  34577889999999999999999999999986553332   3345788999


Q ss_pred             EEEEECChhhHHH-HHHhHhHhhcCceEEec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHH
Q 011011          102 KFLSMLPPWHVYE-RACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVA  177 (495)
Q Consensus       102 ~~l~~~p~~h~~~-~~~~~~~~~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  177 (495)
                      ++++..++.+..+ ....+.....|++++..   ++..+++.|++++|+++.++|+++..|++...+....         
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~---------  191 (422)
T TIGR02155       121 LIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGID---------  191 (422)
T ss_pred             EEEEccCccccchhHHHHHHHHHcCcEEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCC---------
Confidence            9988766543322 22234456778887753   4788999999999999999999999887653321100         


Q ss_pred             HHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCC
Q 011011          178 RALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSL  257 (495)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l  257 (495)
                                                                                      .....+|.+++||+++
T Consensus       192 ----------------------------------------------------------------~~~~~lr~i~~~ge~l  207 (422)
T TIGR02155       192 ----------------------------------------------------------------PAQTSLQVGIFGAEPW  207 (422)
T ss_pred             ----------------------------------------------------------------cccCceEEEEEeCCcC
Confidence                                                                            0011348899999999


Q ss_pred             ChhHHH-HHHHcCCeeeeccCcccCcc-ceeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcch
Q 011011          258 PMHIDL-FYEAIGVKVQVGYGLTESSP-VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQ  335 (495)
Q Consensus       258 ~~~~~~-~~~~~g~~v~~~YG~TE~~~-~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~  335 (495)
                      +++..+ +.+.||+++++.||+||+++ .+...+.. ...+ ...+.+.+.++|+|+++++++++|+.|||++++.    
T Consensus       208 ~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~-~~~g-~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~----  281 (422)
T TIGR02155       208 TNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE-TQDG-LHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL----  281 (422)
T ss_pred             CHHHHHHHHHHhCCceEecccchhhcCCceeecccc-cCCC-ceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC----
Confidence            988754 44568999999999999852 22221111 1111 2222346788999988899999999999999952    


Q ss_pred             hccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccc-eE
Q 011011          336 GYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR-QI  414 (495)
Q Consensus       336 gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~-~~  414 (495)
                              ++++| ..+||+|||+++++++ |  ++.. ...+++.||.||+|++ +|.+|+|.+||.+|.+||.|. ++
T Consensus       282 --------~~~~~-p~~ry~TGDl~~~~~~-~--Gr~~-~~~~~i~GR~~d~i~~-~G~~v~p~eie~~l~~~~~v~~~~  347 (422)
T TIGR02155       282 --------TKEAL-PVIRYRTRDLTRLLPG-T--ARTM-RRMDRITGRSDDMLII-RGVNVFPTQLEEVILKMDELSPHY  347 (422)
T ss_pred             --------Ccccc-ceeeEEcCcEEEEECC-C--CCcc-cccccccCccCCeEEE-CCEEECHHHHHHHHHhCcCcCCCE
Confidence                    34455 3679999999999772 1  1111 1357899999999998 899999999999999999997 55


Q ss_pred             EEEecCC---CeeEEEEecC
Q 011011          415 VVIGQDQ---RRPGAIIVPD  431 (495)
Q Consensus       415 ~vvg~~~---~~~~a~vv~~  431 (495)
                      +++....   +.+...|++.
T Consensus       348 q~~~~~~~~~~~~~~~v~~~  367 (422)
T TIGR02155       348 QLELTRNGHMDELTLKVELK  367 (422)
T ss_pred             EEEEEcCCCccEEEEEEEEe
Confidence            5544322   2555666654

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=4.1e-35  Score=291.99  Aligned_cols=286  Identities=19%  Similarity=0.148  Sum_probs=212.5

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCC--CCcEEEEECChhhHHHHHH-hHhHhhcCceEEec--
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAE--NGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  131 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~--  131 (495)
                      ..+..++++|||||||.||||++||+++.+.+..+...++.+  +.|++++++|++|++++.+ .+.++..|++++..  
T Consensus        93 ~~~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~  172 (386)
T TIGR02372        93 STPTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA  172 (386)
T ss_pred             CCCCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC
Confidence            346689999999999999999999999988777766666664  3468999999999999865 45567889888774  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++.+  +++.++|+++..+.+..                                                
T Consensus       173 ~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~------------------------------------------------  202 (386)
T TIGR02372       173 APASGIMRHARPG--DLIVGTPFIWEQLADLD------------------------------------------------  202 (386)
T ss_pred             CChHHHHHhhccC--CEEEECcHHHHHHHhhC------------------------------------------------
Confidence             456666666533  78999999998775420                                                


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCC-eeeeccCcccCccceeccC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARR  289 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~-~v~~~YG~TE~~~~~~~~~  289 (495)
                                                     ..+.+++. ++||+++++++.+.++..+. .+++.||+||+++++....
T Consensus       203 -------------------------------~~l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~~~~~  250 (386)
T TIGR02372       203 -------------------------------YRLPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIGLREA  250 (386)
T ss_pred             -------------------------------cCCCccee-EecCCCCCHHHHHHHHHhcccchhheeccccccccccccC
Confidence                                           01112254 67889999987554444564 6999999999987554321


Q ss_pred             CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCC
Q 011011          290 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  369 (495)
Q Consensus       290 ~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~  369 (495)
                           ++..|.+.|++++.+ +  ++..           .|+                   ..|++|||++++++     
T Consensus       251 -----~~~~~~~~p~~~~~~-~--~~~~-----------~g~-------------------~~~~~tgD~g~~d~-----  287 (386)
T TIGR02372       251 -----PDDPFRLLPDLACFA-D--TLSS-----------AGL-------------------ARRLDLQDRLAWDK-----  287 (386)
T ss_pred             -----CCCCcccCCCccccC-C--CccC-----------CCc-------------------cceeecCceEEEcC-----
Confidence                 234567777766543 1  1110           011                   23689999999998     


Q ss_pred             CccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCeeEEEEecChHHHHHHHHHcCCCcCCc
Q 011011          370 RSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADA  449 (495)
Q Consensus       370 ~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~  449 (495)
                           +|+++|.||+||+|++ +|++|+|.+||++|.+||.|.+|+|+.. ..++.++|+++++.              .
T Consensus       288 -----~G~l~i~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~~~v~~~-g~~~~a~vv~~~~~--------------~  346 (386)
T TIGR02372       288 -----DGGFTILGRKDEILQV-GGVNVSPGHVRDILERNPRVRAAAVRLD-GRRLKAFIVVAEDA--------------D  346 (386)
T ss_pred             -----CCcEEEecccCCEEEE-CCEEEcHHHHHHHHHcCCCceEEEEEcC-CceEEEEEEECCCC--------------C
Confidence                 8999999999999998 8999999999999999999999999754 35778888876430              0


Q ss_pred             cccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          450 SELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       450 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      .....++++++++++|+.++     +++.|.++++.+.+.+||+
T Consensus       347 ~~~~~~~l~~~~~~~L~~~~-----~P~~i~~~~~lP~t~~GKi  385 (386)
T TIGR02372       347 EAELEIELRATAARHLPAPA-----RPDRFRFGTELPRTGAGKL  385 (386)
T ss_pred             hHHHHHHHHHHHHHhCCCCC-----CCcEEEEcccCCCCCCCCc
Confidence            01113567777777777765     6689999999999999997

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=4.3e-35  Score=284.47  Aligned_cols=312  Identities=25%  Similarity=0.325  Sum_probs=235.9

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHh-HhhcCceEEe---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF-IFSRGIELMY---  130 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~-~~~~G~~~~~---  130 (495)
                      ..+-.+++..+|||||||.||+.++||.........+...++++++|+++..+|++|+++.+++++ ++..|+++++   
T Consensus       238 ~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkK  317 (649)
T KOG1179|consen  238 GLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKK  317 (649)
T ss_pred             CccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecc
Confidence            345678999999999999999999999998877776778899999999999999999999999776 4899999998   


Q ss_pred             cchHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          131 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       131 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                      ++...+|+++.++++|++..+-.+.+-|+.......                                            
T Consensus       318 FSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~--------------------------------------------  353 (649)
T KOG1179|consen  318 FSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPE--------------------------------------------  353 (649)
T ss_pred             cchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChh--------------------------------------------
Confidence            689999999999999999866555555444211100                                            


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChh-HHHHHHHcCCe-eeeccCcccCccceecc
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMH-IDLFYEAIGVK-VQVGYGLTESSPVIAAR  288 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~-~~~~~~~~g~~-v~~~YG~TE~~~~~~~~  288 (495)
                                                     +.-.  +.-+.-|..+.++ .+.|.++||++ |.+.||+||........
T Consensus       354 -------------------------------er~H--kVRla~GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~  400 (649)
T KOG1179|consen  354 -------------------------------ERQH--KVRLAYGNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNY  400 (649)
T ss_pred             -------------------------------hcCc--eEEEEecCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeee
Confidence                                           0001  2223344455454 58899999875 99999999976443321


Q ss_pred             CCCCCCccccccC------cCCcEEEEEeCCCCC----------cCCCCCccEEEE--ccCCc---chhccCCchhhhhc
Q 011011          289 RPTCNVLGSVGHP------INHTEIKIVDAETNE----------VLPAGSKGIVKV--RGSQV---MQGYFKNPSATKQA  347 (495)
Q Consensus       289 ~~~~~~~~~~G~p------~~~~~v~i~d~~~~~----------~~~~g~~GEl~v--~~p~~---~~gY~~~~~~t~~~  347 (495)
                         +...|.+|.-      +--+++.-.|+++++          ++++||.|.++-  .....   |.||.+..++|++.
T Consensus       401 ---d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kK  477 (649)
T KOG1179|consen  401 ---DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKK  477 (649)
T ss_pred             ---cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhh
Confidence               2223333321      122333334666664          467999997763  33344   99999988888765


Q ss_pred             c-----C-CCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC-
Q 011011          348 L-----D-EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-  420 (495)
Q Consensus       348 ~-----~-~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~-  420 (495)
                      .     . .|-||+|||+-.+|+          .|+++|.+|..|.+.. +|+||+..|+|++|.....++|+.|+|+. 
T Consensus       478 l~rDVFkkGD~~f~tGDlLv~D~----------~GylYF~DRtGDTFRW-KGENVsTtEVe~~l~~~~~~~dv~VYGV~V  546 (649)
T KOG1179|consen  478 LLRDVFKKGDVYFNTGDLLVADE----------LGYLYFKDRTGDTFRW-KGENVSTTEVEDVLSALDFLQDVNVYGVTV  546 (649)
T ss_pred             hHHhhhccCcEEEeeCcEEEEec----------CCcEEEeccCCCceee-cCCcccHHHHHHHHhhhccccceeEEEEec
Confidence            4     2 356999999999999          7999999999999999 89999999999999999999999999974 


Q ss_pred             ---CCeeE-EEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCC
Q 011011          421 ---QRRPG-AIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCS  473 (495)
Q Consensus       421 ---~~~~~-a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  473 (495)
                         +.+.+ |.|+.++.                .+.+..++...+++.|+.|.+|..
T Consensus       547 P~~EGRaGMAaI~~~p~----------------~~~d~~~l~~~l~~~LP~YA~P~F  587 (649)
T KOG1179|consen  547 PGYEGRAGMAAIVLDPT----------------TEKDLEKLYQHLRENLPSYARPRF  587 (649)
T ss_pred             CCccCccceEEEEecCc----------------ccchHHHHHHHHHhhCccccchHH
Confidence               24444 55554443                567788899999999999988754

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=100.00  E-value=1.2e-33  Score=288.16  Aligned_cols=293  Identities=16%  Similarity=0.150  Sum_probs=211.9

Q ss_pred             HHHHHHhchhhhcccCCcchhhcccc-------cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc---ccC
Q 011011           27 YDEIIDLGRESRKAFSDSNDARKHYK-------YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVP   96 (495)
Q Consensus        27 ~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~---~~~   96 (495)
                      ++++.+..+...+|+.+|.+++++++       ...++.++++.+++||||||.||+|.+||.++......+..   ..+
T Consensus        47 p~~i~sl~dl~~lP~~~k~~lr~~~p~~~~~~~~~~~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G  126 (445)
T TIGR03335        47 PSDIKSHEDLLELPVISGEVIRKNQPPVTDDFMFKSADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQG  126 (445)
T ss_pred             hhhCCCHHHHHHCCCCCHHHHHhcCCccccccccccCCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcC
Confidence            45666666777789999999988764       33557789999999999999999999999998765544332   347


Q ss_pred             CCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHH
Q 011011           97 AENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR  174 (495)
Q Consensus        97 ~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  174 (495)
                      +.++|+++...|..+..+... .+.++..|++++.. .....++.+++++++.+.++|+.+..++..+.+....      
T Consensus       127 ~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~------  200 (445)
T TIGR03335       127 FTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGID------  200 (445)
T ss_pred             CCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC------
Confidence            889999999988877655433 34456778877654 3456788999999999999999887776543321100      


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEecc
Q 011011          175 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGG  254 (495)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg  254 (495)
                                                                                         .....+|.+++||
T Consensus       201 -------------------------------------------------------------------~~~~~lr~ii~gG  213 (445)
T TIGR03335       201 -------------------------------------------------------------------PAESSIRRLVVGG  213 (445)
T ss_pred             -------------------------------------------------------------------cccCcceEEEEcC
Confidence                                                                               0012348899999


Q ss_pred             CCCChhHHHH-HHHcCCeeeeccCcccCccceeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCc
Q 011011          255 GSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV  333 (495)
Q Consensus       255 ~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~  333 (495)
                      +++++..++. .+.||+++++.||+||++. +..+.    .....+.+.+.+.++|+|++++.++|+|+.|||++++-..
T Consensus       214 E~l~~~~r~~ie~~~g~~v~~~YG~TE~~~-~~~c~----~~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~  288 (445)
T TIGR03335       214 ESFADESRNYVEELWGCEVYNTYGSTEGTM-CGECQ----AVAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLK  288 (445)
T ss_pred             CCCCHHHHHHHHHHhCCcEEecCChhhhhh-eEEec----CCCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCC
Confidence            9999887544 4568999999999999863 22111    1122444556688999999999999999999999984321


Q ss_pred             chhccCCchhhhhccCCCCccccCceeeec-cCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCc
Q 011011          334 MQGYFKNPSATKQALDEDGWLNTGDIGWIA-PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  409 (495)
Q Consensus       334 ~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~-~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p  409 (495)
                      .        .+...++--+ |+|||++.+. +++|.|++..  -.+...||.|||+++ +|.+|+|.+||++|.+++
T Consensus       289 ~--------~~r~~~PliR-YrtgD~~~~~~~~~C~CGr~~--~r~~~~gR~dd~~~~-~g~~~~p~~ie~~l~~~~  353 (445)
T TIGR03335       289 P--------GERCGSLLIN-YDTEDTTVVISRDRCPCGRTH--MRILNPEREAETIWI-SGVPFNRVDVERAVFQRE  353 (445)
T ss_pred             C--------CccCCceEEE-eecCceEEEecCCCCCCCCCc--ceeCCCcccCceEEE-CCEEeCHHHHHHHHhccC
Confidence            0        0011122223 9999999874 4677665432  223346999999999 899999999999999953

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=100.00  E-value=7.7e-31  Score=254.75  Aligned_cols=317  Identities=21%  Similarity=0.249  Sum_probs=240.9

Q ss_pred             eEeHHHHHHhchhhhcccCCcchhhcccccC--CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc---ccCCC
Q 011011           24 VFSYDEIIDLGRESRKAFSDSNDARKHYKYE--TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD---IVPAE   98 (495)
Q Consensus        24 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~---~~~~~   98 (495)
                      -+.++++.++.+....|+++|+++++++++.  +++.++...|..||||||+|+-+.+|+..+......+..   ..+..
T Consensus        53 ~v~p~~i~~l~Dl~klP~t~K~~lre~ypf~~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~  132 (438)
T COG1541          53 GVDPDDIKTLEDLAKLPFTTKDDLRENYPFGDFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVR  132 (438)
T ss_pred             CCChHHhhCHHHHHhCCCCcHHHHHHhCCcccccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCC
Confidence            4678899999999999999999999988844  567788888999999999999999999987665544433   34677


Q ss_pred             CCcEEEEECCh-hhHHHHHHhHhHhhcCceEEec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHH
Q 011011           99 NGDKFLSMLPP-WHVYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARR  174 (495)
Q Consensus        99 ~~d~~l~~~p~-~h~~~~~~~~~~~~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  174 (495)
                      .+|++..+.-. .+..|+.+-+++-..|++++-.   +.+..++.++.++|+++.++|+.+..|++.+.+......    
T Consensus       133 ~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~----  208 (438)
T COG1541         133 KGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPD----  208 (438)
T ss_pred             CCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChh----
Confidence            88887665442 1222233334445577777764   467788999999999999999999999888766531110    


Q ss_pred             HHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEecc
Q 011011          175 VVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGG  254 (495)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg  254 (495)
                                                                                           -.++|.+++|+
T Consensus       209 ---------------------------------------------------------------------~~~lk~~i~ga  219 (438)
T COG1541         209 ---------------------------------------------------------------------KLSLKKGIFGA  219 (438)
T ss_pred             ---------------------------------------------------------------------hcceeEEEEec
Confidence                                                                                 01238899999


Q ss_pred             CCCChhHHHHH-HHcCCeeeeccCcccCccceeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCc
Q 011011          255 GSLPMHIDLFY-EAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQV  333 (495)
Q Consensus       255 ~~l~~~~~~~~-~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~  333 (495)
                      |+.+++.++.. +.||+.+++.||.||..+....   +|......+...+...++|+||++++.+++|+.|||+++    
T Consensus       220 E~~see~R~~ie~~~g~~~~diYGltE~~g~g~~---eC~~~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T----  292 (438)
T COG1541         220 EPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAG---ECTERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVIT----  292 (438)
T ss_pred             ccCCHHHHHHHHHHhCCceeeccccccccCCccc---ccccccCCCcchhhceeeeecCCcCccCCCCCeeEEEEE----
Confidence            99999985555 5689999999999998665322   222222345566789999999999999999999999998    


Q ss_pred             chhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccc-
Q 011011          334 MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIR-  412 (495)
Q Consensus       334 ~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~-  412 (495)
                              .+++++++--+ |+|||++.+.+.+|.|++... -...+.||.||++++ .|.+|+|.+||.+|.+.+.+. 
T Consensus       293 --------~L~~~~~PlIR-YrtgDit~i~~~~C~cGr~~~-ri~~I~GR~dD~l~~-~G~~vfp~~ie~~l~~~~~~~~  361 (438)
T COG1541         293 --------TLTKEGMPLIR-YRTGDITVILSDPCGCGRTHR-RIERIEGRSDDMLIV-RGVNVFPSQIERVLLQIPEVTP  361 (438)
T ss_pred             --------eccccCcceEE-EEcCCeeEecccCCCCCCccc-cccccCcccccEEEE-CCEEeCHHHHHHHHhcccCCCc
Confidence                    44444444334 999999999998887766543 456789999999999 799999999999999999999 


Q ss_pred             --eEEEEec-CCCeeEEEEecC
Q 011011          413 --QIVVIGQ-DQRRPGAIIVPD  431 (495)
Q Consensus       413 --~~~vvg~-~~~~~~a~vv~~  431 (495)
                        ++++... ..+.+..-|+..
T Consensus       362 ~yqi~~~~~~~~d~L~V~vE~~  383 (438)
T COG1541         362 HYQIILTRNGGLDELTVRVELE  383 (438)
T ss_pred             eEEEEEecCCCCceEEEEEEec
Confidence              4444441 134566666654

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=2.9e-28  Score=261.85  Aligned_cols=269  Identities=22%  Similarity=0.302  Sum_probs=221.5

Q ss_pred             CCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec----
Q 011011           56 IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT----  131 (495)
Q Consensus        56 ~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~----  131 (495)
                      ..+++.+|++|||||||.||||+.+|+++.....+....+.....|+++...++.+.......+.++..|++++..    
T Consensus       363 ~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~  442 (642)
T COG1020         363 LLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALL  442 (642)
T ss_pred             CCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccc
Confidence            4568999999999999999999999999998777777778899999999999987777766778889999988874    


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..+.+.+.+++++.+..+|..+..+........                                           
T Consensus       443 ~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~-------------------------------------------  479 (642)
T COG1020         443 QVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD-------------------------------------------  479 (642)
T ss_pred             cCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc-------------------------------------------
Confidence              57788999999999999999998887765311000                                           


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc--CCeeeeccCcccCcccee
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI--GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~--g~~v~~~YG~TE~~~~~~  286 (495)
                                                    .......++.+++||+.++..+ .++....  ...+.+.||+||+.....
T Consensus       480 ------------------------------~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~  529 (642)
T COG1020         480 ------------------------------LISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAP  529 (642)
T ss_pred             ------------------------------ccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhhee
Confidence                                          0001112488899999999887 4455544  468999999999655444


Q ss_pred             ccCCCCCC--ccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeecc
Q 011011          287 ARRPTCNV--LGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  364 (495)
Q Consensus       287 ~~~~~~~~--~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~  364 (495)
                      ........  ..++|.|+++..++|+| +.++++|.|..||+++.|.++++||+++|+.|++.|..+++|+|||++++.+
T Consensus       530 ~~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~  608 (642)
T COG1020         530 SFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLA  608 (642)
T ss_pred             eEEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECC
Confidence            33222211  35789999999999999 7799999999999999999999999999999999997656899999999888


Q ss_pred             CCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCc
Q 011011          365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSS  409 (495)
Q Consensus       365 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p  409 (495)
                                +|.+.++||.|+++|+ +|.+|.+.|||..+.++|
T Consensus       609 ----------dg~~e~lgr~D~qvki-~g~Riel~eie~~l~~~~  642 (642)
T COG1020         609 ----------DGALEYLGRKDSQVKI-RGFRIELGEIEAALAEQP  642 (642)
T ss_pred             ----------CCeEEEeccccceeEe-ceEecCcHHHHHHHhcCC
Confidence                      8999999999999998 899999999999998875

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.85  E-value=4.1e-19  Score=177.61  Aligned_cols=261  Identities=16%  Similarity=0.117  Sum_probs=172.0

Q ss_pred             EEEEEeCCCCCCCchhhhhchHHHHHHHHHh-h--cccCCCCCcEEEEECC-hhhHHHHHHhHhHhhcCceEEe----cc
Q 011011           61 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-Y--DIVPAENGDKFLSMLP-PWHVYERACGYFIFSRGIELMY----TA  132 (495)
Q Consensus        61 ~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~-~--~~~~~~~~d~~l~~~p-~~h~~~~~~~~~~~~~G~~~~~----~~  132 (495)
                      -..+..||||||.|-.+..+..........+ .  ...+...++++...+. -.+.+.....     ....+..    .+
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~~ly~~~~~-----~~~~~~~~~l~~~  175 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADNNLYQSVNN-----RWISLDFFDLLAP  175 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccChhHHHHHHh-----ccceeeecCCCcC
Confidence            4557779999999999999998764433322 2  1224556666555421 1122221110     1111111    35


Q ss_pred             hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHH
Q 011011          133 VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVAL  212 (495)
Q Consensus       133 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  212 (495)
                      .+..++.|++++|+++.+.|+.+..|++.+.+....                                            
T Consensus       176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~--------------------------------------------  211 (430)
T TIGR02304       176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT--------------------------------------------  211 (430)
T ss_pred             HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC--------------------------------------------
Confidence            788999999999999999999999998865442100                                            


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHH-HHHcCCeeeeccCcccCccceeccCCC
Q 011011          213 IDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEAIGVKVQVGYGLTESSPVIAARRPT  291 (495)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~-~~~~g~~v~~~YG~TE~~~~~~~~~~~  291 (495)
                                                      -.++.++++||.+++..++. .+.||++|++.||+|| +.++..+.  
T Consensus       212 --------------------------------~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC~--  256 (430)
T TIGR02304       212 --------------------------------IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTCR--  256 (430)
T ss_pred             --------------------------------CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEecC--
Confidence                                            01278899999999988655 4578999999999999 54433221  


Q ss_pred             CCCccccccCcCCcEEE--EEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCC
Q 011011          292 CNVLGSVGHPINHTEIK--IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  369 (495)
Q Consensus       292 ~~~~~~~G~p~~~~~v~--i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~  369 (495)
                         .+.++.....+.++  ++|++ ++       ++.+||+            .+..+++--+ |+|||++.+.+++|.|
T Consensus       257 ---~g~lHl~ed~~~vE~~ivD~~-~~-------~~~ViT~------------L~n~~~PlIR-YrtGD~~~~~~~~C~C  312 (430)
T TIGR02304       257 ---CGTLHLNEDLVHIEKQYLDEH-KR-------FVPIITD------------FTRTTQPIVR-YRLNDILVESEQPCSC  312 (430)
T ss_pred             ---CCCEEEccccEEEEeeEECCC-Cc-------eEEEEec------------CCCccceEEe-eeCCCEEEeCCCCCCC
Confidence               23344444555666  88865 22       3456662            2333333233 9999999998888877


Q ss_pred             CccccCCeE-EEEccccceEEe--CCcee--ecchHHHHHHh-cCcccceEEEEecCCCeeEEEEecC
Q 011011          370 RSRRCGGVL-VLEGRAKDTIVL--STGEN--VEPLELEEAAL-RSSLIRQIVVIGQDQRRPGAIIVPD  431 (495)
Q Consensus       370 ~~~~~~G~l-~i~GR~~d~i~~--~~G~~--v~~~~IE~~l~-~~p~V~~~~vvg~~~~~~~a~vv~~  431 (495)
                      ++..  -.+ .|.||.+|++++  .+|..  |+|..++.++. ..+.|.+..++....+.+...+++.
T Consensus       313 Gr~~--~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~~~~l~v~~~~~  378 (430)
T TIGR02304       313 GSAT--MAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTGSAQLELIADCE  378 (430)
T ss_pred             CCcc--cccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEccCCeEEEEEEeC
Confidence            6542  223 488999999984  35655  48999998744 5889999999987777777666664

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.78  E-value=2.2e-18  Score=183.96  Aligned_cols=343  Identities=17%  Similarity=0.181  Sum_probs=219.3

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECCh--hhHHHHHHhHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP--WHVYERACGYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~--~h~~~~~~~~~~~~~G~~~~~~-  131 (495)
                      ...+|..+++.||||+||.||+|.-+|..+.....++...+..+..+++ .+.+.  +|..-..+....+..|..+..+ 
T Consensus       192 ~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~l~~p~  270 (1032)
T KOG1178|consen  192 VGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRF-TFKTSVYFDDTIQKFIGALLFNGNNLLVPT  270 (1032)
T ss_pred             eecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchh-hhhheeecccchHHHHhhHhhcCceeeccc
Confidence            3467889999999999999999999999999988888888888777765 33221  1211111122224445544432 


Q ss_pred             -----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCc
Q 011011          132 -----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  206 (495)
Q Consensus       132 -----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  206 (495)
                           .+..+...+++++++..+.+|++.+.++.......   +.+                                  
T Consensus       271 ~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~---~~l----------------------------------  313 (1032)
T KOG1178|consen  271 ATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSL---PLL----------------------------------  313 (1032)
T ss_pred             ccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcch---hhh----------------------------------
Confidence                 37889999999999999999999887766432210   000                                  


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHH-HHHHcC-CeeeeccCcccCccc
Q 011011          207 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYEAIG-VKVQVGYGLTESSPV  284 (495)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~-~~~~~g-~~v~~~YG~TE~~~~  284 (495)
                                               .......++......++....+|++....+.. +...+- .-...-|+.++..+.
T Consensus       314 -------------------------~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~  368 (1032)
T KOG1178|consen  314 -------------------------EHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGL  368 (1032)
T ss_pred             -------------------------hhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccc
Confidence                                     00001112222223458889999998877643 333321 112223888887665


Q ss_pred             eeccCCCC-------CCccccccCcC----CcEEEEEeCCCCCcCCCCCcc----EEEEccCCcchhccCCchhhhhcc-
Q 011011          285 IAARRPTC-------NVLGSVGHPIN----HTEIKIVDAETNEVLPAGSKG----IVKVRGSQVMQGYFKNPSATKQAL-  348 (495)
Q Consensus       285 ~~~~~~~~-------~~~~~~G~p~~----~~~v~i~d~~~~~~~~~g~~G----El~v~~p~~~~gY~~~~~~t~~~~-  348 (495)
                      ........       .....+..-..    ...+++.. ..+.+.+.++.+    .-+-.+..+..| +..++.+...+ 
T Consensus       369 ~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~  446 (1032)
T KOG1178|consen  369 VSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFL  446 (1032)
T ss_pred             eeHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCcccceeecccccccceeecc-ccchhhcCCccc
Confidence            54322111       00011111111    11222222 223333332222    222233344445 34444443333 


Q ss_pred             ----CCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCe-
Q 011011          349 ----DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR-  423 (495)
Q Consensus       349 ----~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~-  423 (495)
                          ..+..|+|||+|+.-.          +|.+.+.||.|++||. +|.++..++|+.++..||.|.++.+....+.. 
T Consensus       447 ~~d~~~~r~y~tgD~gr~l~----------ng~l~~~GR~d~qIK~-rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~  515 (1032)
T KOG1178|consen  447 TVDGVKARIYRTGDNGRSLK----------NGGLEISGRADRQIKD-RGVRIELGELNTVVEVHPDVKEAITLARENSTV  515 (1032)
T ss_pred             ccccchhhcccccccceeec----------CCCEEEEEeccceEEE-ccEEEehhhhchhhccCcchhhhheeeeecccc
Confidence                1245799999998877          7999999999999998 99999999999999999999999998876655 


Q ss_pred             ---eEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          424 ---PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       424 ---~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                         +.+|+++...               ........++.++..+|+.|+.|     ..+..+++.|.+-|||+
T Consensus       516 ~~~l~aFvv~~~~---------------~~~~~~~~i~~~l~~~La~y~vP-----s~~V~l~~vPl~~~GKv  568 (1032)
T KOG1178|consen  516 GQTLLAFVVERGG---------------SKSVLIRDIRNYLKKELASYMLP-----SLVVPLAKVPLNPNGKV  568 (1032)
T ss_pred             CceEEEEEeccCC---------------CCchhHHHHHHhhcccccceecc-----eEEEEhhhCCcCCCCCc
Confidence               8899998753               12223677999999999999855     68888999998998886

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.61  E-value=7.4e-14  Score=145.61  Aligned_cols=317  Identities=18%  Similarity=0.178  Sum_probs=203.7

Q ss_pred             cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011           53 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  131 (495)
Q Consensus        53 ~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~  131 (495)
                      +....++-+|++-+.--++|.--++.+||.++++.+........+.+..-++.+.+.+...|+.. ++...+.|...++.
T Consensus       937 ~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li 1016 (1363)
T KOG3628|consen  937 PGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLI 1016 (1363)
T ss_pred             ccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHHcCCceeec
Confidence            34456788999999888999999999999999999999988888888888888888888777765 67778999987664


Q ss_pred             -------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          132 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       132 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                             ++..++..++++++.-.+.+-..++....+............                  .....-++.....
T Consensus      1017 ~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~g------------------nn~s~s~vv~~~~ 1078 (1363)
T KOG3628|consen 1017 SPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRG------------------NNTSSSIVVPAEE 1078 (1363)
T ss_pred             CHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhh------------------cccccceeeecCC
Confidence                   578899999999998887776666665554333221111110                  0001122222333


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCc-eEE-EeccCCCChhHHHHHHHcCCeeeeccCcccCc
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGIS-KAG-VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS  282 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i-~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~  282 (495)
                      +|.....      +                 .+.++....+.. +.+ .+-+..+.+.+          ..++|...|-.
T Consensus      1079 RPr~ali------~-----------------sf~klfa~igLsp~avStsys~r~Np~I----------c~r~~sg~~Pt 1125 (1363)
T KOG3628|consen 1079 RPRIALI------A-----------------SFKKLFAAIGLSPRAVSTSYSSRVNPFI----------CLRSYSGPEPT 1125 (1363)
T ss_pred             ccHHHHH------H-----------------HHHHHHHHcCCChhhhcccccccCChHh----------hhccccCCCCc
Confidence            3332110      0                 011111111110 000 00011111110          11222222211


Q ss_pred             ccee--------------ccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchh-hhhc
Q 011011          283 PVIA--------------ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA-TKQA  347 (495)
Q Consensus       283 ~~~~--------------~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~-t~~~  347 (495)
                      ....              ...+.....-..|...+++++.|++||+..++.+|+.||||+.|.+.+.+|++-.+. -...
T Consensus      1126 ~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~ 1205 (1363)
T KOG3628|consen 1126 TVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNH 1205 (1363)
T ss_pred             ceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhh
Confidence            1100              000111112234888899999999999999999999999999999999888763211 1112


Q ss_pred             c---------CCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhc-CcccceEEEE
Q 011011          348 L---------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALR-SSLIRQIVVI  417 (495)
Q Consensus       348 ~---------~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~-~p~V~~~~vv  417 (495)
                      |         ....|-||||+|+.....|.....-....+|++|-.++.+.+ +|.+.+|.+||..+.+ ||.|.+|+|+
T Consensus      1206 fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl-~GL~h~p~DIE~TV~~vH~~I~~cavF 1284 (1363)
T KOG3628|consen 1206 FNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLEL-NGLRHFPSDIETTVERVHPSIGGCAVF 1284 (1363)
T ss_pred             hhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeee-cCcccCcchHHHHHHHhcccccceeeE
Confidence            2         124599999999987654443333333579999999999999 9999999999998876 9999999999


Q ss_pred             ecCC
Q 011011          418 GQDQ  421 (495)
Q Consensus       418 g~~~  421 (495)
                      ....
T Consensus      1285 ~~~g 1288 (1363)
T KOG3628|consen 1285 QATG 1288 (1363)
T ss_pred             eeCC
Confidence            7654

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.60  E-value=4.1e-15  Score=145.53  Aligned_cols=103  Identities=15%  Similarity=0.114  Sum_probs=89.9

Q ss_pred             CCCccccCceeee-ccCCCCCCccccCCeEEEEccccceEEeCCc---eeecchHHHHHHhcCcccceEEEEecCCC---
Q 011011          350 EDGWLNTGDIGWI-APHHSRGRSRRCGGVLVLEGRAKDTIVLSTG---ENVEPLELEEAALRSSLIRQIVVIGQDQR---  422 (495)
Q Consensus       350 ~~~~~~TGDl~~~-~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G---~~v~~~~IE~~l~~~p~V~~~~vvg~~~~---  422 (495)
                      .+|||+|||+|++ ++          +|+++|.||.|      +|   ++|+|. ||++|.+||+|.+|+|+|.+++   
T Consensus       207 ~dgW~~TGDlg~~~d~----------dG~l~~~gR~~------~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~g  269 (365)
T PRK09188        207 SRIWLATGKKVYNFIT----------RGLFSWSDGEG------TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKG  269 (365)
T ss_pred             cCcEEeCCCEEEEEcC----------CCeEEEEecCc------CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCC
Confidence            6899999999998 57          89999999987      67   899999 9999999999999999998764   


Q ss_pred             -eeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          423 -RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       423 -~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                       .+.|+|++..                  ..+.++++++++++|+. +.|     ++|.++++.|.+.+||+
T Consensus       270 e~v~A~Vv~~~------------------~~~~~el~~~l~~~L~~-kvP-----~~v~~v~~lP~t~~GKi  317 (365)
T PRK09188        270 VGLYAFVEAEL------------------PADEKSLRARLAGAKPP-KPP-----EHIQPVAALPRDADGTV  317 (365)
T ss_pred             eEEEEEEEECC------------------CCCHHHHHHHHHhhchh-cCC-----cEEEEECCCCCCCCCCc
Confidence             4668888642                  24568899999999998 744     89999999999999987

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=99.32  E-value=8.8e-11  Score=115.22  Aligned_cols=246  Identities=20%  Similarity=0.235  Sum_probs=139.5

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcc----cCCCCC-cEEEEECChhh----HHHHHH-hHhHhhc
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI----VPAENG-DKFLSMLPPWH----VYERAC-GYFIFSR  124 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~----~~~~~~-d~~l~~~p~~h----~~~~~~-~~~~~~~  124 (495)
                      +.+++++..++.||||||.|--+.+.+..+..+...+...    .+.... -.++...|-..    +..... .......
T Consensus        85 S~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~  164 (365)
T PF04443_consen   85 SVPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFF  164 (365)
T ss_pred             ecChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhccc
Confidence            4556778889999999999866666665555443333222    122211 12333334221    111111 1111223


Q ss_pred             CceEEe----cchHhHHHHH----hHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhc
Q 011011          125 GIELMY----TAVRNLKDDL----QRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEG  196 (495)
Q Consensus       125 G~~~~~----~~~~~~~~~i----~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (495)
                      +..-.+    .+...+...+    ...+|..+++.|.++..++..+++.....                           
T Consensus       165 ~~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~---------------------------  217 (365)
T PF04443_consen  165 GSRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRF---------------------------  217 (365)
T ss_pred             CceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcc---------------------------
Confidence            333222    1344444444    45678899999988877766544432110                           


Q ss_pred             cccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CceEEEecc------CCCCh-hHH-HHHHH
Q 011011          197 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIG-ISKAGVSGG------GSLPM-HID-LFYEA  267 (495)
Q Consensus       197 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~gg------~~l~~-~~~-~~~~~  267 (495)
                                                                    .+. ..+++-+||      +.++. +.. .+.+.
T Consensus       218 ----------------------------------------------~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~  251 (365)
T PF04443_consen  218 ----------------------------------------------RLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEV  251 (365)
T ss_pred             ----------------------------------------------cCCCCCEEEeCCCCCccccCccCHHHHHHHHHHH
Confidence                                                          111 124555554      34544 444 44455


Q ss_pred             cCC----eeeeccCcccCccceeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchh
Q 011011          268 IGV----KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA  343 (495)
Q Consensus       268 ~g~----~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~  343 (495)
                      +|+    .+++.|||||.......+..     +..  +.|-. +.|.||++.+++|.|+.|-|.+-++....        
T Consensus       252 ~Gv~~~~~i~~~ygmtEl~s~~~~~~~-----~~~--~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~s--------  315 (365)
T PF04443_consen  252 FGVIPIENIYDMYGMTELNSQAYECGH-----GHF--HVPPW-VIIRDPETLEPLPPGETGLIQVIDLANTS--------  315 (365)
T ss_pred             HCCCCHHHeeeeeeccccchhheeCCC-----Ccc--cCCCe-EEEECCCCCcCCCCCCeeEEEEEcccccC--------
Confidence            887    69999999997654432211     111  22222 77789999999999999999887543321        


Q ss_pred             hhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecch
Q 011011          344 TKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPL  399 (495)
Q Consensus       344 t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~  399 (495)
                            .-+..-|.|+|.+..++| |+| +.+.++.++||.+..= + +|+.....
T Consensus       316 ------~p~~IlTeDlGvl~~~~~-c~c-r~g~~f~vlGR~~~ae-~-RGCs~~~~  361 (365)
T PF04443_consen  316 ------YPGFILTEDLGVLHGDDD-CGC-RKGKYFEVLGRADGAE-I-RGCSLTFA  361 (365)
T ss_pred             ------CCcEEEEcceeeecCCCC-CCC-ccCCEEEEEeCCCCCc-c-CCcHHHHH
Confidence                  123366999998776433 333 4346899999987654 3 68766443

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=98.88  E-value=2.1e-08  Score=105.83  Aligned_cols=293  Identities=14%  Similarity=0.178  Sum_probs=178.6

Q ss_pred             EEEEEeCCCCCCCchhhhhchHHHHHHHHHhh--------------------cccCCCCCcEEEEECChhhHHHHHHh-H
Q 011011           61 IATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY--------------------DIVPAENGDKFLSMLPPWHVYERACG-Y  119 (495)
Q Consensus        61 ~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~--------------------~~~~~~~~d~~l~~~p~~h~~~~~~~-~  119 (495)
                      ..+|-||++++|.--|++++|+ +..+.+.+.                    ..++....+.++..+......|++++ +
T Consensus       252 ~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~  330 (1363)
T KOG3628|consen  252 YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVL  330 (1363)
T ss_pred             eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhh
Confidence            8899999999999999999998 443332211                    11223445677777777777777775 4


Q ss_pred             hHhhcCceEEec------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHH
Q 011011          120 FIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI  193 (495)
Q Consensus       120 ~~~~~G~~~~~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (495)
                      .++++|.+....      .+..+...+.++|.+++..--..+.+....+.+.....-                       
T Consensus       331 ~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~-----------------------  387 (1363)
T KOG3628|consen  331 VALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATL-----------------------  387 (1363)
T ss_pred             hhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCccccc-----------------------
Confidence            568888877653      467788888999999887755455444333322110000                       


Q ss_pred             hhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhcCCceEEEeccCCCChhHHH-----HHHH
Q 011011          194 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQ-SAIGISKAGVSGGGSLPMHIDL-----FYEA  267 (495)
Q Consensus       194 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~gg~~l~~~~~~-----~~~~  267 (495)
                                                                .+.+.. -.++++|.+++.-..+..+.+.     |++.
T Consensus       388 ------------------------------------------s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~  425 (1363)
T KOG3628|consen  388 ------------------------------------------SFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKP  425 (1363)
T ss_pred             ------------------------------------------chhhccCCCccceeeeEEeeeecchHHHHHHHHhhccc
Confidence                                                      001111 2233444444444444443322     1111


Q ss_pred             ------------------cCCeeeeccCcccCccceeccCC------------------------------CCCCccccc
Q 011011          268 ------------------IGVKVQVGYGLTESSPVIAARRP------------------------------TCNVLGSVG  299 (495)
Q Consensus       268 ------------------~g~~v~~~YG~TE~~~~~~~~~~------------------------------~~~~~~~~G  299 (495)
                                        +|.-.+..=+++|.+......+.                              .......+|
T Consensus       426 lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~  505 (1363)
T KOG3628|consen  426 LGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVL  505 (1363)
T ss_pred             ccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccc
Confidence                              12212222233443322211110                              001122345


Q ss_pred             cCcCC-cEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccC------------CCCccccCceeeeccCC
Q 011011          300 HPINH-TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD------------EDGWLNTGDIGWIAPHH  366 (495)
Q Consensus       300 ~p~~~-~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~------------~~~~~~TGDl~~~~~~~  366 (495)
                      ...|+ +.+.++++++...|.++++|||||.++++..+||.-+..|...|.            ...|.|||-+|++.+  
T Consensus       506 ~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~--  583 (1363)
T KOG3628|consen  506 CIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHN--  583 (1363)
T ss_pred             eecccceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeC--
Confidence            55554 777889999999999999999999999999999988777776651            123789999999997  


Q ss_pred             CCCCccccCCeEEEEccccceEEeCCceeecchH----------HHHHHhcCcccceEEEEecCCCeeEEEEecCh
Q 011011          367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLE----------LEEAALRSSLIRQIVVIGQDQRRPGAIIVPDK  432 (495)
Q Consensus       367 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~----------IE~~l~~~p~V~~~~vvg~~~~~~~a~vv~~~  432 (495)
                               |.++|+|-++|++..-.|...+..+          |+.+.+..+.|-++.++-  ++++..+++-++
T Consensus       584 ---------gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~--~E~~~Vv~~esP  648 (1363)
T KOG3628|consen  584 ---------GKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE--DEHIVVVVLESP  648 (1363)
T ss_pred             ---------CeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee--cceEEEEEEeCc
Confidence                     7777777666666544677766554          345566678899999886  555655555444

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=98.63  E-value=9.9e-08  Score=88.30  Aligned_cols=78  Identities=13%  Similarity=-0.004  Sum_probs=64.5

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEe---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY---  130 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~---  130 (495)
                      ...++|++.++|||||         +|+++....    ...+++++|+++ .+|++|++|+.. .+.++..|+++++   
T Consensus       146 ~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~r  211 (227)
T TIGR03089       146 PPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTH  211 (227)
T ss_pred             CCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecC
Confidence            3467999999999986         666655543    456788999999 999999999976 4566999999887   


Q ss_pred             cchHhHHHHHhHhCCc
Q 011011          131 TAVRNLKDDLQRYQPH  146 (495)
Q Consensus       131 ~~~~~~~~~i~~~~~t  146 (495)
                      +++..+++.|+++|+|
T Consensus       212 Fd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       212 PDPARLDQIAETERVT  227 (227)
T ss_pred             CCHHHHHHHHHhhcCC
Confidence            4799999999999986

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.58  E-value=2.6e-06  Score=88.63  Aligned_cols=157  Identities=20%  Similarity=0.253  Sum_probs=86.4

Q ss_pred             Cce-EEEeccCCCChhHHHHHHHcC-Ce-eeeccCcccCccceeccCCCCCCccccccCcCCcEEEEEeCCC--------
Q 011011          246 ISK-AGVSGGGSLPMHIDLFYEAIG-VK-VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAET--------  314 (495)
Q Consensus       246 ~~~-~i~~gg~~l~~~~~~~~~~~g-~~-v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~--------  314 (495)
                      .++ +.+.+|+...+-...+.+.+| .+ +-.+|++||+...+... +  ...+.+-.|-.+ -++.++.+.        
T Consensus       268 ~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~~-~--~~~~~~l~~~~~-ffEFip~~~~~~~~~~~  343 (528)
T PF03321_consen  268 NLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPLD-P--EDPGYVLAPDSG-FFEFIPVDEDEQNPSEQ  343 (528)
T ss_dssp             T--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES--C--CC--EEE-TTSS-EEEEEE-STT-------
T ss_pred             CCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEecC-C--CCCceEeecCCe-EEEEEeccCCcccccCC
Confidence            345 455566666666677777664 33 44689999964333221 1  111111122222 344444332        


Q ss_pred             CC-----cCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCC--eEEEEccccce
Q 011011          315 NE-----VLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG--VLVLEGRAKDT  387 (495)
Q Consensus       315 ~~-----~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G--~l~i~GR~~d~  387 (495)
                      .+     .+..|+.-||+++..   .|.|.              |+.||++++..        ..++  .+.|+||.+.+
T Consensus       344 ~~~l~~~ele~G~~YelviTt~---~GLyR--------------Y~iGDvVrv~g--------f~~~~P~i~F~~R~~~~  398 (528)
T PF03321_consen  344 PKTLLLHELEVGEEYELVITTN---SGLYR--------------YRIGDVVRVTG--------FYNQTPRIEFVGRRGQV  398 (528)
T ss_dssp             SSSEEGGG--TT-EEEEEEEST---TS-SS--------------EEECEEEEEEE--------EETTEEEEEEEEETTEE
T ss_pred             CceecHHHhcCCCeEEEEEecc---cceee--------------eecCCEEEEee--------ccCCCcEEEEeccCCce
Confidence            22     345777889999832   12221              89999998864        1134  79999999999


Q ss_pred             EEeCCceeecchHHHHHHhcC-----cccceEEEEec----CCCeeEEEEecCh
Q 011011          388 IVLSTGENVEPLELEEAALRS-----SLIRQIVVIGQ----DQRRPGAIIVPDK  432 (495)
Q Consensus       388 i~~~~G~~v~~~~IE~~l~~~-----p~V~~~~vvg~----~~~~~~a~vv~~~  432 (495)
                      +.+ .|++++-.++++++.+.     -.+.+..+...    ..++...++.+..
T Consensus       399 l~l-~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~  451 (528)
T PF03321_consen  399 LSL-FGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEG  451 (528)
T ss_dssp             E-S-SS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS
T ss_pred             eec-ceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCC
Confidence            998 89999999999998874     45567777655    2344555555543

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.31  E-value=1.3e-06  Score=65.09  Aligned_cols=68  Identities=18%  Similarity=0.113  Sum_probs=53.0

Q ss_pred             HHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCc
Q 011011          400 ELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQ  475 (495)
Q Consensus       400 ~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  475 (495)
                      |||+++.+||+|.+|+|++.+++    .+.|++++  .                    .++++++++++|+.|+.|.  .
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~--~--------------------~~~i~~~~~~~l~~~~~P~--~   56 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL--D--------------------EEEIRDHLRDKLPPYMVPR--R   56 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE--H--------------------HHHHHHHHHHHS-GGGS-S--E
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe--e--------------------ecccccchhhhCCCcceee--E
Confidence            79999999999999999998754    67788887  1                    2789999999999998662  1


Q ss_pred             cccEEEecC-CCCCCCCe
Q 011011          476 IGPIHVVDE-PFTVNFLC  492 (495)
Q Consensus       476 ~~~~~~~~~-~~~~~~~~  492 (495)
                       .+|..+++ .+.+.|||
T Consensus        57 -~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen   57 -IRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             -EEEEEESSSEEBETTSS
T ss_pred             -EEEccccCcCCCCCCCC
Confidence             44554566 88888886

...

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=98.22  E-value=0.00025  Score=73.68  Aligned_cols=67  Identities=13%  Similarity=0.156  Sum_probs=47.9

Q ss_pred             CCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeec
Q 011011          318 LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  397 (495)
Q Consensus       318 ~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  397 (495)
                      +..|+.=||+|+.   +.|.|              -||.||+.++..      ..+..-.+.|++|.+.+..+ .|++..
T Consensus       398 vk~G~~YelVvTt---~~GLY--------------RYrlGDvv~V~G------F~n~~P~~~Fv~R~~~vlsi-~gEK~t  453 (606)
T PLN02247        398 VKVGHYYELVVTT---FTGLY--------------RYRVGDILMVTG------FYNNAPQFRFVQRRNVVLSI-DTDKTN  453 (606)
T ss_pred             ccCCCeEEEEEEe---cCceE--------------EEecCCEEEEee------ecCCCceEEEEecCCceeec-ccccCC
Confidence            4467777888872   11211              188999988753      11113579999999988887 899999


Q ss_pred             chHHHHHHhcC
Q 011011          398 PLELEEAALRS  408 (495)
Q Consensus       398 ~~~IE~~l~~~  408 (495)
                      -.++..++.+.
T Consensus       454 E~~l~~Av~~a  464 (606)
T PLN02247        454 EEDLLKAVTQA  464 (606)
T ss_pred             HHHHHHHHHHH
Confidence            99998888763

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=98.05  E-value=0.00058  Score=71.56  Aligned_cols=133  Identities=15%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             ceEEEeccCCCChhHHHHHHHc-CCe-eeeccCcccCccceeccCCCCCCcccccc--CcCCcEEEEEeCCC-C------
Q 011011          247 SKAGVSGGGSLPMHIDLFYEAI-GVK-VQVGYGLTESSPVIAARRPTCNVLGSVGH--PINHTEIKIVDAET-N------  315 (495)
Q Consensus       247 ~~~i~~gg~~l~~~~~~~~~~~-g~~-v~~~YG~TE~~~~~~~~~~~~~~~~~~G~--p~~~~~v~i~d~~~-~------  315 (495)
                      +.++..||..  +-...+...+ +.+ +...|++||+-..+-..+ .+ .+..++.  ...+.-++.++.+. +      
T Consensus       307 i~~~~~G~~~--~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~-~~-~p~~~~~~l~~~~~ffEFiP~~~~~~~~~~~  382 (597)
T PLN02249        307 LDVIVTGAMA--QYIPMLEYYSGGLPMASTIYASSESYFGINLNP-MC-KPSEVSYTIMPNMAYFEFLPHNHDGDGALDE  382 (597)
T ss_pred             EEEEecCChH--HHHHHHHHHcCCCccccccccccceEEEeecCC-CC-CCCCcceEecCCcEEEEeeecccCCcccCCC
Confidence            4566666644  3334443334 333 567899999643332211 11 1111111  12244445553110 0      


Q ss_pred             ------CcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEE
Q 011011          316 ------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIV  389 (495)
Q Consensus       316 ------~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~  389 (495)
                            ..+..|+.=||+|+.   ..|.|              -|+.||++++..-.      +.--.+.|+||.+.++.
T Consensus       383 ~~~v~l~eVe~G~~Y~lVvTT---~~GLy--------------RY~iGDvVrvtgf~------~~~P~i~F~gR~~~~ls  439 (597)
T PLN02249        383 TSLVELADVEVGKEYELVITT---YAGLY--------------RYRVGDILRVTGFH------NSAPQFKFIRRKNVLLS  439 (597)
T ss_pred             CcEecHHHcCCCCeEEEEEEc---cccee--------------EeecCCEEEEeecc------CCCcEEEEEccCCccee
Confidence                  123467777888872   11211              18999999887511      00246999999999999


Q ss_pred             eCCceeecchHHHHHHhc
Q 011011          390 LSTGENVEPLELEEAALR  407 (495)
Q Consensus       390 ~~~G~~v~~~~IE~~l~~  407 (495)
                      + .|+++.-.+++.++.+
T Consensus       440 ~-~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        440 I-ESDKTDEADLQKAVEN  456 (597)
T ss_pred             c-ccccCCHHHHHHHHHH
Confidence            8 8999999999998877

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=98.04  E-value=0.0017  Score=67.52  Aligned_cols=66  Identities=15%  Similarity=0.227  Sum_probs=47.4

Q ss_pred             CCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeec
Q 011011          318 LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVE  397 (495)
Q Consensus       318 ~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~  397 (495)
                      +..|+.=|++|+.   +.|.|              -||.||+.++..      ..+..-.+.|++|.+-+..+ .|++.+
T Consensus       404 v~~G~~YelvvTt---~~GLy--------------RYrlGDvv~V~G------f~n~~P~~~Fv~R~~~~lsi-~gEK~t  459 (612)
T PLN02620        404 VKLGQEYELVVTT---YAGLY--------------RYRVGDVLRVAG------FKNKAPQFSFICRKNVVLSI-DSDKTD  459 (612)
T ss_pred             ccCCCeEEEEEEe---cCceE--------------EEecCCEEEEee------ecCCCceEEEEeecCceeec-ccccCC
Confidence            4567777888872   11211              188999988753      11113569999999888887 899999


Q ss_pred             chHHHHHHhc
Q 011011          398 PLELEEAALR  407 (495)
Q Consensus       398 ~~~IE~~l~~  407 (495)
                      -.++..++.+
T Consensus       460 E~~l~~Av~~  469 (612)
T PLN02620        460 EVELQNAVKN  469 (612)
T ss_pred             HHHHHHHHHH
Confidence            9999887766

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=88.85  E-value=1.1  Score=34.92  Aligned_cols=64  Identities=13%  Similarity=0.050  Sum_probs=39.2

Q ss_pred             ceeecchHHHHHHhcCcccc-eEEEEec---CCCeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhH
Q 011011          393 GENVEPLELEEAALRSSLIR-QIVVIGQ---DQRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW  468 (495)
Q Consensus       393 G~~v~~~~IE~~l~~~p~V~-~~~vvg~---~~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  468 (495)
                      |.||+|.+||+++.++|.+. +..++-.   ..+.+...|...++.             ........++.+.+.+.|...
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~-------------~~~~~~~~~l~~~i~~~lk~~   67 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGF-------------SDDAEDLEALAERIAERLKER   67 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTC-------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCcc-------------CcchHHHHHHHHHHHHHHHhh
Confidence            78999999999999999998 4444322   223455555555320             000113466777777777765


Q ss_pred             h
Q 011011          469 T  469 (495)
Q Consensus       469 ~  469 (495)
                      .
T Consensus        68 l   68 (96)
T PF14535_consen   68 L   68 (96)
T ss_dssp             H
T ss_pred             c
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	495
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-14
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		4e-14
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		1e-13
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		2e-13
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-13
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-13
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-13
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		3e-12
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		2e-11
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		8e-11
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		1e-09
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		5e-09
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		1e-08
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-08
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-08
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		3e-08
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		7e-07
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		9e-07
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-06
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		2e-06
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		2e-06
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		2e-06
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-06
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		6e-06
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		1e-05
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-05
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		2e-05
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		1e-04
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		1e-04
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		1e-04
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		4e-04
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		4e-04
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		4e-04
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		5e-04
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		9e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 271 KVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGI 325
           K+  GYG+TE+ PV+A     A+ P     G+ G  + + E+KIVD +T + L     G 
Sbjct: 372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGE 431
Query: 326 VKVRGSQVMQGYFKNPSATKQALDEDGWLNT 356
           + +RG Q+M+GY  NP+AT + +D+DGWL+T
Sbjct: 432 ICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 275 GYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR 329
           GYG+TE+ PV+A     A+ P     G+ G  + + E+KIVD ET   LP    G + +R
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIR 388
Query: 330 GSQVMQGYFKNPSATKQALDEDGWLNTG 357
           G Q+M+GY  +P AT + +D++GWL+TG
Sbjct: 389 GDQIMKGYLNDPEATSRTIDKEGWLHTG 416

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 272 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 331
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 341 IRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGP 400
Query: 332 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 272 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 331
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395
Query: 332 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 425

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 272 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 331
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 395
Query: 332 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 425

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 53/90 (58%)
Query: 272 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 331
           ++ GYGLTE++  I       +  G+VG  +   E K+VD +T + L    +G + VRG 
Sbjct: 341 IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGP 400
Query: 332 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
            +M GY  NP AT   +D+DGWL++GDI +
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAY 430

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 272 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 331
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 332 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 272 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 331
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 332 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 272 VQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 331
           V+ GYGLTE++  I       +  G+ G  +   + K++D +T + L    +G V V+G 
Sbjct: 338 VRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGP 397
Query: 332 QVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
            +M+GY  NP ATK+ +DE+GWL+TGDIG+
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGY 427

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 272 VQVGYGLTES-SPVIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG 330
           ++ GYGLTE+ S +I   R   +  G+ G  +     KIVD +T + L    +G + V+G
Sbjct: 370 IRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKG 429
Query: 331 SQVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
             +M+GY  NP AT   +D+DGWL++GDI +
Sbjct: 430 PMIMKGYVNNPEATSALIDKDGWLHSGDIAY 460

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 29/201 (14%)
Query: 251 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIA-----------ARRPTCNVLGSVG 299
           V GG + P  +   +E +GV+V+ GYGLTE+SPV+            +      +    G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358
Query: 300 HPINHTEIKIVDAETNEVLPAGSK-GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD 358
            PI    +++ D E   V   G   G V+++G  +  GY+ N  AT+ AL  DG+  TGD
Sbjct: 359 LPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 418
Query: 359 IG-WIAPHHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVI 417
           I  W                + ++ R KD ++ S GE +              +++  V+
Sbjct: 419 IAVW-----------DEEGYVEIKDRLKD-LIKSGGEWISSVDLENALMGHPKVKEAAVV 466
Query: 418 G----QDQRRPGAIIVPDKEE 434
                + Q RP A++VP  E+
Sbjct: 467 AIPHPKWQERPLAVVVPRGEK 487

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 21/209 (10%)
Query: 255 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 311
           GS P+  D   E     G  V   YG TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 312 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXX 371
            ET + LP G  G ++V+G  V +GY++ P  TK    +DG+  TGD+G I         
Sbjct: 336 PETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKI--------- 386
Query: 372 XXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AI 427
                V +L GR KD +V++ G NV P            + +  VIG      G    A+
Sbjct: 387 DERGYVHIL-GRGKD-LVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAV 444
Query: 428 IVPDKEEVLMAAKRLSIVHADASELSKEK 456
           +V DK   +  A+   ++H    +L+K K
Sbjct: 445 VVRDKGATIDEAQ---VLHGLDGQLAKFK 470

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 251 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 308
           ++GG  +P  +   Y A  ++V  GY LTES     +          GS G     T++ 
Sbjct: 290 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 349
Query: 309 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXX 368
           +     + V+    +G V ++   +++ Y+  P AT+ A D +GW  TGDIG I      
Sbjct: 350 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGY- 405
Query: 369 XXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG--- 425
                    L ++ R KD I+ S GENV P            + ++ VIG    + G   
Sbjct: 406 ---------LYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIA 455
Query: 426 -AIIVPDKEEV 435
            AI+V D+ EV
Sbjct: 456 AAIVVADQNEV 466

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 229 HLLAEKL-VYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA 286
           H +AE L    ++  A+  ++  VSG  +LP+H  +    A G +V   YG+TE+    +
Sbjct: 255 HRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTS 314
Query: 287 ARRPTCNVLGSVGHPINHTEIKIVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSAT 344
            R       G+VG P+   E+++V+ +   +  L   S G ++VRG  +   Y   P AT
Sbjct: 315 VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDAT 374
Query: 345 KQALDEDGWLNTGDI 359
             A  EDG+  TGD+
Sbjct: 375 AAAFTEDGFFRTGDM 389

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 255 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 311
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 312 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 255 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 311
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 312 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 255 GSLPMHIDLFYE---AIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVD 311
           GS P+  D   E     G  V   YG+TE++   +       V G+VG  +     ++ D
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD 335
Query: 312 AETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
            ET   LP G  G+++V G  V  GY++ P  T     +DG+  TGD+G I
Sbjct: 336 PETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXI 386

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 297 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNT 356
           S G P+    + +VDAE +  LP G  G + +RG  V +GY+ N +AT+ A   +GW +T
Sbjct: 322 SAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHT 379
Query: 357 GDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLST-GENVEPXXXXXXXXRSSLIRQIV 415
           GD+G                 L   GRA +  ++ T GENV P        +   I   V
Sbjct: 380 GDMGRF----------DADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429
Query: 416 VIG 418
           VIG
Sbjct: 430 VIG 432

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 275 GYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIVKVRGS- 331
           GYG TE+   +  R+P     G+   P   +E++IV      +E++  G +G + V  S 
Sbjct: 303 GYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASD 359
Query: 332 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVLS 391
               GY   P AT + L +DGW  T D+    P            V +L GR  D I+ S
Sbjct: 360 SAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVDDMII-S 407
Query: 392 TGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 438
            GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 408 GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 269 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 326
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAXNSLYXRQPKT---GTEXAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 327 KVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 385
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 386 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 438
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DXII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 224 ILWPLHLLAEKLVYK-KIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESS 282
           I+W    L +   YK +IQS   +   G S   SL   +    E +  K+Q  +G+ E  
Sbjct: 293 IMW----LEKAAQYKDQIQSLKLLQVGGASFPESLARQVP---EVLNCKLQQVFGMAEGL 345
Query: 283 PVIAARRPTCN--VLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFK 339
            V   R    +  +  + G PI+   EIKIVD +  EV P G  G++  RG     GY++
Sbjct: 346 -VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREV-PEGEIGMLATRGPYTFCGYYQ 403
Query: 340 NPSATKQALDEDGWLNTGDIGWIAP 364
           +P    Q  DED +  +GD+    P
Sbjct: 404 SPEHNSQVFDEDNYYYSGDLVQRTP 428

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 269 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 326
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 327 KVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 385
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPEATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 386 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 438
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 269 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 326
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 327 KVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 385
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 386 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 438
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 23/177 (12%)
Query: 269 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 326
           G KV + YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVNI-YGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 327 KVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 385
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVP 402
Query: 386 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 438
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 269 GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV--DAETNEVLPAGSKGIV 326
           G KV   YG TE+   +  R+P     G+   P   +E++IV      +E++  G +G +
Sbjct: 298 GEKVN-AYGTTEAMNSLYMRQPKT---GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGEL 353
Query: 327 KVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAK 385
            V  S     GY   P AT + L +DGW  T D+    P            V +L GR  
Sbjct: 354 IVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE---------GTVRIL-GRVD 402
Query: 386 DTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPG----AIIVPDKEEVLMA 438
           D I+ S GEN+ P         +  + ++VVIG   +R G    A +VP   E L A
Sbjct: 403 DMII-SGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA 458

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 251 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTES--SPVIAARRPTCNVLGSVGHPINHTEIK 308
           ++GG  +P  +   Y A  ++V  GY LTES     +          GS G     T++ 
Sbjct: 276 ITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVA 335
Query: 309 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
           +     + V+    +G V ++   +++ Y+  P AT+ A D +GW  TGDIG I
Sbjct: 336 V--RGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEI 386

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 55  TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWH 111
           +I S+DIA   YTSG+T +PKGV ++H NLL  +  ++      +     S LPP H
Sbjct: 163 SIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHH 219

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Query: 276 YGLTESSPVIAARRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVM 334
           +G TE+ P +    P   +   + G P +  E+K++  E    L  G  G + +RG  + 
Sbjct: 335 WGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIF 394
Query: 335 QGYFKNPSATKQA--LDEDG--WLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTIVL 390
           +GY+K     ++    DE G  +  TGD+G+I               L  + R K+ I  
Sbjct: 395 KGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEE----------GFLHFQDRVKEVIKY 444
Query: 391 STGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAIIVPDKEEVLMAAKRLSIVHADAS 450
             G  + P        +   +  + VIG+     G   VP    VL    R  +   D  
Sbjct: 445 K-GYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGE--VPKAFIVLKPEYRGKVDEEDII 501
Query: 451 ELSKEK 456
           E  +E+
Sbjct: 502 EWVRER 507

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 268 IGVKVQVGYGLTESSPVIAARR---PTCNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSK 323
           IG ++Q  +G+ E   ++   R       ++ + G+P+    E+ + DAE N  LP G  
Sbjct: 326 IGCQLQQVFGMAEG--LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP-LPQGEV 382
Query: 324 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGR 383
           G +  RG    +GY+K+P     A D +G+  +GD+  I P             + ++GR
Sbjct: 383 GRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE----------GYITVQGR 432
Query: 384 AKDTI 388
            KD I
Sbjct: 433 EKDQI 437

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 16/184 (8%)
Query: 249 AGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 308
           A V+G    P   + F E  G+K+  G+G TE+   IA         GS+G P    +I+
Sbjct: 346 AVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIE 405
Query: 309 IVDAETN--EVLPAGSKGIVKVRGSQV--MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 364
           ++D +    EV   G   I  + G  V     Y K+P  T++    DG+ +TGD+ W+  
Sbjct: 406 LMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWM-- 462
Query: 365 HHXXXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRP 424
                        L   GRA D I+ ++G  V P        +   + +  + G      
Sbjct: 463 --------DEDGYLWFVGRADD-IIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVR 513
Query: 425 GAII 428
           G +I
Sbjct: 514 GQVI 517

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL-YDIVPAENGDKFLSMLPPWH 111
           +DIA   YTSG+T  P+GV++TH+ +   +R++ +D +    GD+ +S LP +H
Sbjct: 175 NDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYH 228

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 57  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL---SMLPPWHVY 113
           G++D+A  +YTSGTTGNPKGV + H N+L  +     +      D++L   S+   + V+
Sbjct: 173 GAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVW 232
Query: 114 ERACGYFIFSRGIELM 129
           E    +  FS G EL+
Sbjct: 233 EI---WGAFSTGAELV 245

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 253 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 312
           G   LP  ++ +    G+ ++  YG TE+       +      G +G   +  +++I+D 
Sbjct: 331 GESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDD 390
Query: 313 ETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHX 367
           + N VLP G++G + +R   +       GY  NP  T   +  D WL  GD G       
Sbjct: 391 KGN-VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG------- 441
Query: 368 XXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAI 427
                         GRA D I+ S+G  + P            + +  VI       G +
Sbjct: 442 ---IKDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV 497
Query: 428 IVPDKEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 467
           +   K  V++A++ LS    D  +L+KE     K+++  Y   RK
Sbjct: 498 V---KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 29/225 (12%)
Query: 253 GGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 312
           G   LP  ++ +    G+ ++  YG TE+       +      G +G   +  +++I+D 
Sbjct: 331 GESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDD 390
Query: 313 ETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHX 367
           + N VLP G++G + +R   +       GY  NP  T   +  D WL  GD G       
Sbjct: 391 KGN-VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRG------- 441
Query: 368 XXXXXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQRRPGAI 427
                         GRA D I+ S+G  + P            + +  VI       G +
Sbjct: 442 ---IKDEDGYFQFMGRADD-IINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEV 497
Query: 428 IVPDKEEVLMAAKRLSIVHADASELSKE-----KTISLLYGELRK 467
           +   K  V++A++ LS    D  +L+KE     K+++  Y   RK
Sbjct: 498 V---KAFVVLASQFLS---HDPEQLTKELQQHVKSVTAPYKYPRK 536

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 14/171 (8%)
Query: 252 SGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIV 310
           S G +LP  I + F    G ++  G G TE   +  + R      G+ G P+   EI++ 
Sbjct: 307 SAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELR 366
Query: 311 DAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHXXXX 370
           D E    +P G  G + ++G      Y+ N   ++     + W+ +GD     P+     
Sbjct: 367 D-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPN----- 419
Query: 371 XXXXXXVLVLEGRAKDTIVLSTGENVEPXXXXXXXXRSSLIRQIVVIGQDQ 421
                   V  GR+ D + +S G+ V P        +   + +  V+G D 
Sbjct: 420 -----GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDH 464

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 58  SDDIATYVYTSGTTGNPKGVMLTHKNL 84
           S D+A  +YTSGTTGNPKG ML HK +
Sbjct: 181 STDLAYVIYTSGTTGNPKGTMLEHKGI 207

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 290 PTCNVLGSVGHPIN-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL 348
           P   ++ + G P++ + E ++ D    +V P G  G +  RG   ++GY+K       + 
Sbjct: 345 PEEIIVNTQGKPMSPYDESRVWDDHDRDVKP-GETGHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 349 DEDGWLNTGDIGWIAPHHXXXXXXXXXXVLVLEGRAKDTI 388
            EDG+  TGDI                  +V+EGRAKD I
Sbjct: 404 TEDGFYRTGDI----------VRLTRDGYIVVEGRAKDQI 433

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	495
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-43
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	5e-16
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	1e-39
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	9e-16
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	2e-38
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	5e-15
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	3e-38
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	9e-15
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	5e-38
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-15
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-37
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-12
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-36
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	1e-11
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	8e-36
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	3e-12
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-35
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-11
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	5e-35
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-16
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	6e-35
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-17
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-34
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	7e-15
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-34
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	3e-16
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	1e-33
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	3e-16
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	3e-32
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	4e-15
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	4e-31
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	6e-07
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-22
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	2e-12
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	2e-20
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-13
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-15
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	1e-06
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	2e-15
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	3e-13
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	4e-12
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-05
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	2e-11
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	8e-10
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-09
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-09
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-08
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	2e-08
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  160 bits (406), Expect = 1e-43
 Identities = 57/246 (23%), Positives = 98/246 (39%), Gaps = 45/246 (18%)

Query: 248 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 306
           +  +SG   L       +    G  V   YG+TE++   +       V G+VG  +    
Sbjct: 271 RLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVS 330

Query: 307 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 366
            ++ D ET + LP G  G+++V+G  V +GY++ P  TK    +DG+  TGD+G I    
Sbjct: 331 ARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDER- 389

Query: 367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGA 426
                    G + + GR KD ++ + G NV P E+E        + +  VIG        
Sbjct: 390 ---------GYVHILGRGKDLVI-TGGFNVYPKEIESEIDAMPGVVESAVIG-------- 431

Query: 427 IIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP------ 478
             VP  +  E + A     +V    + + +         ++         Q+        
Sbjct: 432 --VPHADFGEGVTAV----VVRDKGATIDEA--------QVLHG---LDGQLAKFKMPKK 474

Query: 479 IHVVDE 484
           +  VD+
Sbjct: 475 VIFVDD 480

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 79.5 bits (197), Expect = 5e-16
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 4   IILLWGKKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSD-SNDARKHYKYETIGSDDIA 62
           I++    K      I  ++       +  LG + R + +D +  A + +     G+DD+A
Sbjct: 103 IVVCDPSKRDGIAAIAAKVGA----TVETLGPDGRGSLTDAAAGASEAFATIDRGADDLA 158

Query: 63  TYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 113
             +YTSGTTG  KG ML+H NL     +L D       D  +  LP +H +
Sbjct: 159 AILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTH 209

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  148 bits (377), Expect = 1e-39
 Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 19/192 (9%)

Query: 250 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIK 308
            VSG  +LP+H  +    A G +V   YG+TE+    + R       G+VG P+   E++
Sbjct: 277 LVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELR 336

Query: 309 IVDAETNEV--LPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 366
           +V+ +   +  L   S G ++VRG  +   Y   P AT  A  EDG+  TGD+    P  
Sbjct: 337 LVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPD- 395

Query: 367 SRGRSRRCGGVLVLEGR-AKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQR-- 422
                    G + + GR A D I  S G  +   E+E A L    +R+  V G+ D    
Sbjct: 396 ---------GYVRIVGRKATDLIK-SGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLG 445

Query: 423 -RPGAIIVPDKE 433
            R  A IVP   
Sbjct: 446 ERIVAWIVPADP 457

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 78.4 bits (194), Expect = 9e-16
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 54  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 113
           +     D A  VYTSGTTG PKG ++  + L   + +L D       D  +  LP +HV+
Sbjct: 150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVH 209

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  146 bits (370), Expect = 2e-38
 Identities = 60/228 (26%), Positives = 92/228 (40%), Gaps = 37/228 (16%)

Query: 248 KAGVSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT 305
               SGG  L     +          V+ GYGLTE++  I       +  G+ G  +   
Sbjct: 312 VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLF 371

Query: 306 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 365
           + K++D +T + L    +G V V+G  +M+GY  NP ATK+ +DE+GWL+TGDIG+    
Sbjct: 372 KAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEE 431

Query: 366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 425
                         +  R K  I    G  V P ELE   L+   I    V G       
Sbjct: 432 ----------KHFFIVDRLKSLIKYK-GYQVPPAELESVLLQHPSIFDAGVAG------- 473

Query: 426 AIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 471
              VPD    E+  A     +V      ++++        E+  + + 
Sbjct: 474 ---VPDPVAGELPGAV----VVLESGKNMTEK--------EVMDYVAS 506

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 76.5 bits (189), Expect = 5e-15
 Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 14/156 (8%)

Query: 10  KKSSVAPDIV---EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVY 66
           K  +    IV    ++    Y  +    + +      ++  +     E    + +A  + 
Sbjct: 143 KTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTV---EVDRKEQVALIMN 199

Query: 67  TSGTTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFS 123
           +SG+TG PKGV LTH+N+       R          G   L+++P  H +          
Sbjct: 200 SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI 259

Query: 124 RGIELM----YTAVRNLKDDLQRYQPHYMISVPLVY 155
            G  ++    +     LK  LQ Y+   +I VP ++
Sbjct: 260 CGFRVVMLTKFDEETFLK-TLQDYKCTSVILVPTLF 294

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  145 bits (369), Expect = 3e-38
 Identities = 58/228 (25%), Positives = 91/228 (39%), Gaps = 37/228 (16%)

Query: 248 KAGVSGGGSLPMH-IDLFYEAIG-VKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHT 305
               SGG  L     +   +      ++ GYGLTE++  I       +  G+VG  +   
Sbjct: 310 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFF 369

Query: 306 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 365
           E K+VD +T + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +    
Sbjct: 370 EAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDED 429

Query: 366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG 425
                         +  R K  I    G  V P ELE   L+   I    V G       
Sbjct: 430 ----------EHFFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAG------- 471

Query: 426 AIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 471
              +PD +  E+  A     +V      ++++        E+  + + 
Sbjct: 472 ---LPDDDAGELPAAV----VVLEHGKTMTEK--------EIVDYVAS 504

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 75.7 bits (187), Expect = 9e-15
 Identities = 28/153 (18%), Positives = 47/153 (30%), Gaps = 8/153 (5%)

Query: 10  KKSSVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSG 69
           KK  +   I+       Y     +            +              IA  + +SG
Sbjct: 141 KKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSG 200

Query: 70  TTGNPKGVMLTHKNL---LHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGI 126
           +TG PKGV L H+         R              LS++P  H +           G 
Sbjct: 201 STGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGF 260

Query: 127 ELM----YTAVRNLKDDLQRYQPHYMISVPLVY 155
            ++    +     L+  LQ Y+    + VP ++
Sbjct: 261 RVVLMYRFEEELFLR-SLQDYKIQSALLVPTLF 292

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  145 bits (367), Expect = 5e-38
 Identities = 68/230 (29%), Positives = 109/230 (47%), Gaps = 42/230 (18%)

Query: 251 VSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPIN 303
            SGG  L   + D         ++  GYG+TE+ PV+A     A+ P     G+ G  + 
Sbjct: 303 KSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVR 362

Query: 304 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 363
           + E+KIVD ET   LP    G + +RG Q+M+GY  +P AT + +D++GWL+TGDIG+I 
Sbjct: 363 NAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYID 422

Query: 364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 423
                         L +  R K+ I    G  V P ELE   +    I    V+G     
Sbjct: 423 DD----------DELFIVDRLKELIKYK-GFQVAPAELEALLIAHPEISDAAVVG----- 466

Query: 424 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSK 471
                + D++  EV +A     +V ++ S+ +++        E++++ SK
Sbjct: 467 -----LKDEDAGEVPVAF----VVKSEKSQATED--------EIKQYISK 499

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 78.0 bits (193), Expect = 2e-15
 Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 11/136 (8%)

Query: 30  IIDLGRESRKAFSD-SNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNL---- 84
            +D   +    FS+ +           I  DD+    Y+SGTTG PKGVMLTHK L    
Sbjct: 148 CVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSV 207

Query: 85  LHQIRSLYDIVPAENGDKFLSMLPPWHVY-ERACGYFIFSRGIELM----YTAVRNLKDD 139
             Q+      +   + D  L +LP +H+Y   +        G  ++    +     L   
Sbjct: 208 AQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLG-L 266

Query: 140 LQRYQPHYMISVPLVY 155
           +++Y+      VP V 
Sbjct: 267 IEKYKVSIAPVVPPVM 282

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  142 bits (360), Expect = 3e-37
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 43/227 (18%)

Query: 248 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 306
           +     G ++P   ++  ++ +  +    YG TE+   +  R+P     G+   P   +E
Sbjct: 275 RHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPK---TGTEMAPGFFSE 331

Query: 307 IKIVDAET--NEVLPAGSKGIVKVRGS-QVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 363
           ++IV      +E++  G +G + V  S     GY   P AT + L  DGW  T D+    
Sbjct: 332 VRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWT 390

Query: 364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 423
           P           G + + GR  D I+ S GEN+ P E+E     +  + ++VVIG     
Sbjct: 391 PE----------GTVRILGRVDDMII-SGGENIHPSEIERVLGTAPGVTEVVVIG----- 434

Query: 424 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 468
                + D+   + + A     +V      LS +         L  +
Sbjct: 435 -----LADQRWGQSVTAC----VVPRLGETLSAD--------ALDTF 464

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 67.6 bits (166), Expect = 3e-12
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENG--DKFLSMLPPWHVY 113
                 A   YTSGTTG PK  ++  +    ++  +   V   +G  +  L ++P +HV 
Sbjct: 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209

Query: 114 ERACG 118
                
Sbjct: 210 GFFAV 214

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  140 bits (356), Expect = 2e-36
 Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 19/199 (9%)

Query: 248 KAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI-AARRPTCNVLGSVGHPIN-H 304
           K    GG S P  +     E +  K+Q  +G+ E              +  + G PI+  
Sbjct: 310 KLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD 369

Query: 305 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 364
            EIKIVD +  EV P G  G++  RG     GY+++P    Q  DED +  +GD+    P
Sbjct: 370 DEIKIVDEQYREV-PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP 428

Query: 365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR- 422
                      G L + GR KD I    GE +   E+E+  L    +    ++   D++ 
Sbjct: 429 D----------GNLRVVGRIKDQIN-RGGEKIASEEIEKLILLHPEVMHAALVAIVDEQF 477

Query: 423 --RPGAIIVPDKEEVLMAA 439
             +  A IV    E+    
Sbjct: 478 GEKSCAFIVSRNPELKAVV 496

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 66.0 bits (162), Expect = 1e-11
 Identities = 16/68 (23%), Positives = 33/68 (48%)

Query: 46  DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 105
            A     + +  +D++A +  + G+TG PK +  TH +  + +R+  +I    +  + L 
Sbjct: 178 PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLC 237

Query: 106 MLPPWHVY 113
            LP  H +
Sbjct: 238 ALPAPHNF 245

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  139 bits (353), Expect = 8e-36
 Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 29/193 (15%)

Query: 250 GVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAARRPTCN------VLGSVGHPI 302
              GG  L   +       IG ++Q  +G+ E          T        ++ + G+P+
Sbjct: 307 LQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNY-----TRLDDSAEKIIHTQGYPM 361

Query: 303 N-HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
               E+ + DAE N + P G  G +  RG    +GY+K+P     A D +G+  +GD+  
Sbjct: 362 CPDDEVWVADAEGNPL-PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420

Query: 362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QD 420
           I P           G + ++GR KD I    GE +   E+E   LR   +    ++  +D
Sbjct: 421 IDPE----------GYITVQGREKDQIN-RGGEKIAAEEIENLLLRHPAVIYAALVSMED 469

Query: 421 QR---RPGAIIVP 430
           +    +  A +V 
Sbjct: 470 ELMGEKSCAYLVV 482

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 15  APDIVEEIPVFSYDEIIDLGRESRKAFSDS-NDARKHYKYETIGSDDIATYVYTSGTTGN 73
               V E    S   +  L         D+ N   + +      +D++A +  + GTTG 
Sbjct: 141 LNTFVTEHS--SIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGT 198

Query: 74  PKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 113
           PK +  TH +  + +R   +I       ++L  +P  H Y
Sbjct: 199 PKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY 238

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  138 bits (350), Expect = 1e-35
 Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 19/195 (9%)

Query: 248 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVI-AARRPTCNVLGSVGHPIN-H 304
           +    GG               G  +Q  +G+ E          P   ++ + G P++ +
Sbjct: 301 QVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPY 360

Query: 305 TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP 364
            E ++ D    +V   G  G +  RG   ++GY+K       +  EDG+  TGDI  +  
Sbjct: 361 DESRVWDDHDRDV-KPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR 419

Query: 365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQR- 422
                      G +V+EGRAKD I    GE V   E+E   L    +    ++   DQ  
Sbjct: 420 D----------GYIVVEGRAKDQIN-RGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFL 468

Query: 423 --RPGAIIVPDKEEV 435
             R    I+P  E  
Sbjct: 469 GERSCVFIIPRDEAP 483

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 64.5 bits (158), Expect = 3e-11
 Identities = 14/60 (23%), Positives = 30/60 (50%)

Query: 54  ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVY 113
             + S D+A    + G+TG  K +  TH + ++ ++   ++   ++   +L+ LP  H Y
Sbjct: 177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNY 236

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  136 bits (344), Expect = 5e-35
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 20/194 (10%)

Query: 248 KAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHT 305
           +  ++GG  +P  +   Y A  ++V  GY LTES                GS G     T
Sbjct: 287 RYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFT 346

Query: 306 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH 365
           ++ +   +       G   +V ++   +++ Y+  P AT+ A D +GW  TGDIG I   
Sbjct: 347 DVAVRGDDGVIR-EHGEGEVV-IKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDE 403

Query: 366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR- 423
                     G L ++ R KD I+ S GENV P E+E   +    + ++ VIG  D++  
Sbjct: 404 ----------GYLYIKDRLKDMII-SGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWG 452

Query: 424 --PGAIIVPDKEEV 435
               AI+V D+ EV
Sbjct: 453 EIAAAIVVADQNEV 466

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score = 80.3 bits (199), Expect = 3e-16
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER 115
            G DD    +YTSGTTG+PKGV+ TH+++     S    +     D+ L  LP +HV   
Sbjct: 167 CGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAAL 226

Query: 116 ACGYFIFSRG----IELMYTAVRNLKDDLQRYQPHYMISVPLVYETL 158
               F   RG        + A +     +   +     +VP +   +
Sbjct: 227 TTVIFSAMRGVTLISMPQFDATKVW-SLIVEERVCIGGAVPAILNFM 272

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  136 bits (345), Expect = 6e-35
 Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 43/231 (18%)

Query: 248 KAGVSGGGSLPMHI-DLFYEAIGVKVQV-------GYGLTESSPVIAARRPT-CNVLGSV 298
           K   +G   +   + +   +    K           +G+TE+ P++    P   +   + 
Sbjct: 299 KVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358

Query: 299 GHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL----DEDGWL 354
           G P++  E+K++  E    L  G  G + +RG  + +GY+K     ++          + 
Sbjct: 359 GVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFF 418

Query: 355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQI 414
            TGD+G+I             G L  + R K+ I    G  + P ELE   ++   +  +
Sbjct: 419 RTGDVGFIDEE----------GFLHFQDRVKEVIKYK-GYTIAPFELEALLMKHEAVMDV 467

Query: 415 VVIGQ-DQRR---PGAIIVP--------DKEEVL------MAA-KRLSIVH 446
            VIG+ D+     P A IV         D+E+++      ++  KR+  V 
Sbjct: 468 AVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVE 518

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 84.9 bits (211), Expect = 1e-17
 Identities = 32/158 (20%), Positives = 64/158 (40%), Gaps = 10/158 (6%)

Query: 12  SSVAPDIVEEIPVFSYDEIIDLGRESRKAFSD--SNDARKHYKYETIGSDDIATYVYTSG 69
           S +  +    +     + +  +G     + S+   + +      +    +D+A   YT G
Sbjct: 132 SMLYENFKPVLEKTGVERVFVVG-GEVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGG 190

Query: 70  TTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELM 129
           TTG PKGVMLTH NL      L       + D  +  +P +H  E      + + G E +
Sbjct: 191 TTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYV 250

Query: 130 YTAVRNLK---DDLQRYQPHYMISVPLVYETLYSGIQK 164
              + N +   +++++Y+  +  +VP       + +  
Sbjct: 251 VMGMFNQEMLAENIEKYKGTFSWAVP----PALNVLVN 284

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  137 bits (346), Expect = 2e-34
 Identities = 66/214 (30%), Positives = 99/214 (46%), Gaps = 34/214 (15%)

Query: 251 VSGGGSLPMH-IDLFYEAI-GVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPIN 303
            SG   L     D         K+  GYG+TE+ PV+A     A+ P     G+ G  + 
Sbjct: 350 KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVR 409

Query: 304 HTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIA 363
           + E+KIVD +T + L     G + +RG Q+M+GY  NP+AT + +D+DGWL+TGDIG I 
Sbjct: 410 NAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLID 469

Query: 364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 423
                         L +  R K+ I    G  V P ELE   +    I  + V+      
Sbjct: 470 DD----------DELFIVDRLKELIKYK-GFQVAPAELEALLIGHPDITDVAVVA----- 513

Query: 424 PGAIIVPDKE--EVLMAAKRLSIVHADASELSKE 455
                + ++   EV +A     +V +  SELS++
Sbjct: 514 -----MKEEAAGEVPVAF----VVKSKDSELSED 538

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 76.6 bits (189), Expect = 7e-15
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 22  IPVFSYDEIIDLGR-ESRKAFSD----SNDARKHYKYETIGSDDIATYVYTSGTTGNPKG 76
           + +   D+   +   E    F++    + +A +      I  DD+    Y+SGTTG PKG
Sbjct: 183 VVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKG 242

Query: 77  VMLTHKNL----LHQIRSLYDIVPAENGDKFLSMLPPWHVY-ERACGYFIFSRGIEL--M 129
           VMLTHK L      Q+      +   + D  L +LP +H+Y   +        G  +  M
Sbjct: 243 VMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM 302

Query: 130 --YTAVRNLKDDLQRYQPHYMISVPLVY 155
             +     L+  +QR +      VP + 
Sbjct: 303 PKFEINLLLE-LIQRCKVTVAPMVPPIV 329

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  134 bits (339), Expect = 2e-34
 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 25/189 (13%)

Query: 251 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP--TCNVLGSVGHPINHTEIK 308
           + GG  L   +        + +   +G+TE+        P        +VG P  + ++K
Sbjct: 280 LLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339

Query: 309 IVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR 368
           I +            G + ++G+ VM GY      T     E+G+ NTGDI  I      
Sbjct: 340 IKNPNKEGH------GELMIKGANVMNGYLYPTDLTG-TF-ENGYFNTGDIAEIDHE--- 388

Query: 369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ-DQRR---P 424
                  G +++  R KD I+ S GEN+ P ++E  A +   I   V +G  D      P
Sbjct: 389 -------GYVMIYDRRKDLII-SGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVP 440

Query: 425 GAIIVPDKE 433
               V + +
Sbjct: 441 KLYFVSESD 449

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score = 80.3 bits (199), Expect = 3e-16
 Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 5/150 (3%)

Query: 13  SVAPDIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTG 72
            +     +       D  + +  ++        ++  +    +   DDIA+ ++TSGTTG
Sbjct: 117 DIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTG 176

Query: 73  NPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELM--- 129
             K V  T +N         + +  +    +LS+LP +H+   +        G  +    
Sbjct: 177 PQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236

Query: 130 -YTAVRNLKDDLQRYQPHYMISVPLVYETL 158
            + A + L   ++  +  ++  VP     L
Sbjct: 237 KFNAEQIL-TMIKNERITHISLVPQTLNWL 265

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  131 bits (333), Expect = 1e-33
 Identities = 59/203 (29%), Positives = 85/203 (41%), Gaps = 31/203 (15%)

Query: 248 KAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVI----AARRPTCNVLGSVGHPI 302
           +A        P  I+ F            +G +E+S +        RP      S G P+
Sbjct: 275 RAVTGLDT--PETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRP-----KSAGRPL 327

Query: 303 NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWI 362
               + +VDAE   + P G  G + +RG  V +GY+ N +AT+ A   +GW +TGD+G  
Sbjct: 328 FWRTVAVVDAEDRPL-PPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRF 385

Query: 363 APHHSRGRSRRCGGVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ- 419
                        G L   GRA  K+ I  + GENV P E+E A  +   I   VVIG  
Sbjct: 386 DAD----------GYLFYAGRAPEKELIK-TGGENVYPAEVEGALKQHPAIADAVVIGVP 434

Query: 420 DQRR---PGAIIVPDKEEVLMAA 439
           D +      A+ V    E + A 
Sbjct: 435 DPQWSEAIKAVCVCKPGESIAAD 457

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 80.3 bits (199), Expect = 3e-16
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 56  IGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYER 115
            G+ D    ++T+   G P+G +++  NLL    SL D       D  L MLP +HV   
Sbjct: 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGL 216

Query: 116 ACGYFIFSRGIELM----YTAVRNLKDDLQRYQPHYMISVPLVYETL 158
                +   G   +    +   +    D++ ++   M     +   +
Sbjct: 217 GLMLTLQQAGGASVIAAKFDPAQAA-RDIEAHKVTVMAEFAPMLGNI 262

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  128 bits (324), Expect = 3e-32
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 17/187 (9%)

Query: 248 KAGVSGGGSLPMH-IDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTE 306
           +   S G +LP    + F    G ++  G G TE   +  + R      G+ G P+   E
Sbjct: 303 RICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYE 362

Query: 307 IKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH 366
           I++ D   + V P G  G + ++G      Y+ N   ++       W+ +GD     P+ 
Sbjct: 363 IELRDEAGHAV-PDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLPN- 419

Query: 367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG-QDQRR-- 423
                    G  V  GR+ D + +S G+ V P+E+E   ++   + +  V+G        
Sbjct: 420 ---------GCYVYAGRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVK 469

Query: 424 PGAIIVP 430
             A +V 
Sbjct: 470 TRAFVVL 476

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 76.5 bits (189), Expect = 4e-15
 Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 15  APDIVEEIPVFSYDEIIDLGRESRKAFSDS-----NDARKHYKYETIGSDDIATYVYTSG 69
               +E         I+   RES    +       + A    K    G DDIA ++Y+SG
Sbjct: 134 VTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSG 193

Query: 70  TTGNPKGVMLTHKNLLHQI----RSLYDIVPAENGDKFLSMLPPWHVYERACG-YFIFSR 124
           +TG PKG + TH NL        + +  I      D   S    +  Y    G  F  S 
Sbjct: 194 STGKPKGTVHTHANLYWTAELYAKPILGIAE---NDVVFSAAKLFFAYGLGNGLTFPLSV 250

Query: 125 GIELMYTAVR----NLKDDLQRYQPHYMISVPLVYETLYSGI 162
           G   +  A R     +   L  ++P     VP    TLY+ +
Sbjct: 251 GATAILMAERPTADAIFARLVEHRPTVFYGVP----TLYANM 288

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  125 bits (316), Expect = 4e-31
 Identities = 63/235 (26%), Positives = 99/235 (42%), Gaps = 45/235 (19%)

Query: 251 VSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG-----------SVG 299
           V GG + P  +   +E +GV+V+ GYGLTE+SPV+       ++               G
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 358

Query: 300 HPINHTEIKIVDAETNEVLPA-G-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG 357
            PI    +++ D E   V P  G + G V+++G  +  GY+ N  AT+ AL  DG+  TG
Sbjct: 359 LPIPLVRLRVADEEGRPV-PKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 417

Query: 358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVI 417
           DI                G + ++ R KD I  S GE +  ++LE A +    +++  V+
Sbjct: 418 DIAVWDEE----------GYVEIKDRLKDLIK-SGGEWISSVDLENALMGHPKVKEAAVV 466

Query: 418 GQ-DQR---RPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW 468
                +   RP A++VP                       +E    LL     KW
Sbjct: 467 AIPHPKWQERPLAVVVP----------------RGEKPTPEELNEHLLKAGFAKW 505

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 51.0 bits (123), Expect = 6e-07
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNL-LHQIR-SLYDIVPAENGDKFLSMLPPWHV 112
                  YT+GTTG PKGV+ +H+ L LH +  SL D       D  L ++P +HV
Sbjct: 176 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 231

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 93.5 bits (233), Expect = 2e-20
 Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 41/210 (19%)

Query: 284 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 343
                 P    L S G+PI   E+KI+D +T         G + V+ + V +GY+  P  
Sbjct: 362 FADDNSPGSYKLVSSGNPI--QEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEE 419

Query: 344 TKQAL--------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGEN 395
           T+ A             +L TGD+G++               L + GR KD I++  G+N
Sbjct: 420 TRHAFAGKIKDDERSAIYLRTGDLGFLH-----------ENELYVTGRIKDLIIIY-GKN 467

Query: 396 VEPLELEEAALRSSLIRQIVVIGQDQRRPG---AIIVPDKEEVLMAAKRLSIVHADASEL 452
             P ++E + + S                G   A ++ ++ E      +L+++    +  
Sbjct: 468 HYPQDIEFSLMHSP----------LHHVLGKCAAFVIQEEHE-----YKLTVMCEVKNRF 512

Query: 453 SKEKTISLLYGELRKWTSKCSFQIGPIHVV 482
             +     L+ E+ +   + + Q+    +V
Sbjct: 513 MDDVAQDNLFNEIFELVYE-NHQLEVHTIV 541

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 46  DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLS 105
           +    ++  +I S+DIA   YTSG+T +PKGVM++H NLL  +  ++      +     S
Sbjct: 154 NRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFS 213

Query: 106 MLPPWHV 112
            LPP H 
Sbjct: 214 WLPPHHD 220

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 47/222 (21%)

Query: 251 VSGGGSL-PMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKI 309
           V+ G SL P  ++ +    G+ ++  YG TE+       +      G +G   +  +++I
Sbjct: 328 VTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQI 387

Query: 310 VDAETNEVLPAGSKGIVKVRGSQV-----MQGYFKNPSATKQALDEDGWLNTGDIGWIAP 364
           +D + N + P G++G + +R   +       GY  NP  T   +    +   GD G    
Sbjct: 388 IDDKGNVL-PPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDE 445

Query: 365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRP 424
                      G     GRA D I  S+G  + P E+E A +    + +  VI       
Sbjct: 446 D----------GYFQFMGRADDIIN-SSGYRIGPSEVENALMEHPAVVETAVIS------ 488

Query: 425 GAIIVPDKEEVLMAAKRLSIVHA-----------DASELSKE 455
                PD         R  +V A           D  +L+KE
Sbjct: 489 ----SPDPV-------RGEVVKAFVVLASQFLSHDPEQLTKE 519

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 57  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPP-W 110
           GS + +   +TSGT+G PK    ++ +L  + +        +  D   ++    W
Sbjct: 204 GSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGW 258

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 23/111 (20%)

Query: 284 VIAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSA 343
                      L S   P     ++IVD++T    P G+ G + V G  V  GY++ P  
Sbjct: 382 AKPCAGGGATSLISYMLPR-SPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDE 440

Query: 344 TKQAL-----------DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR 383
           +++              E  WL TGD G++             G + + GR
Sbjct: 441 SERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR 480

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 46  DARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD------IVPAEN 99
           DA   Y ++       A   YTSG+T  P GV+++H+N+      L              
Sbjct: 170 DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPP 229

Query: 100 GDKFLSMLPPWHV 112
               +S LP +H 
Sbjct: 230 NSALVSWLPFYHD 242

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 67.2 bits (165), Expect = 4e-12
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 28/154 (18%)

Query: 261 IDLFYEAIGVKVQVGYGLTESSPVIA-----ARRPTCNVLGSVGHPINHTEIKIVDAETN 315
            + F E  G+K+  G+G TE+   IA       +P     GS+G P    +I+++D +  
Sbjct: 358 FNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKP-----GSIGKPTPGYKIELMDRDGR 412

Query: 316 EVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGR 370
                G +G + +         +   Y K+P  T++    DG+ +TGD+ W+        
Sbjct: 413 LC-EVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDED----- 465

Query: 371 SRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEA 404
                G L   GRA D I  ++G  V P E+E A
Sbjct: 466 -----GYLWFVGRADDII-KTSGYKVGPFEVESA 493

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 25/118 (21%), Positives = 36/118 (30%), Gaps = 33/118 (27%)

Query: 57  GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL------------ 104
            ++DI    ++SGT G PK V   +   L  I +       E+                 
Sbjct: 223 KNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVW 282

Query: 105 -SMLPPWH------VYERACGYFIFSRGIELM--Y---------TAVRNL-KDDLQRY 143
             +   W       VY+     F     +E    Y         T  R L K+DL  Y
Sbjct: 283 GKLYGQWIAGCAVFVYDY--DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHY 338

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 64.7 bits (157), Expect = 2e-11
 Identities = 47/353 (13%), Positives = 82/353 (23%), Gaps = 63/353 (17%)

Query: 38  RKAFSDSNDARKHYKYETI----GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD 93
           R+    S+  R+      +     +D       + GTTG PK V+     +   I     
Sbjct: 66  RQFSDISHCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMS 125

Query: 94  IVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISVPL 153
                 G        P      A        G      A+R             +   P 
Sbjct: 126 GYQHRPG-------RPSGNTLAAIPTGPHIVGAINKERALR------LGGMFFSIDIDPR 172

Query: 154 VYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALI 213
             +   S              V               + I            P  L    
Sbjct: 173 WVKRSLSEGDTATVRKYTHHLVDQVQNT------LMNQDIRFLVTT------PPVL---- 216

Query: 214 DWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI----- 268
                           LL    V  +++ ++        GG    +++D           
Sbjct: 217 --------------RELLKRPEVVLQMKQSL---AQITLGGT--ELNLDEIKFIASEILP 257

Query: 269 GVKVQVGYGLTESSPVIAAR-RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVK 327
             +    YG T +  V  +    + +               +VD+ T + +  G +G V 
Sbjct: 258 DCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVI 317

Query: 328 V---RGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGV 377
           V             +  +A +      G+        I P       +   GV
Sbjct: 318 VTHLSPWAFYPRVAERDTAIR-LPGVSGFAGDRLAD-IEPLKISEGRKVIEGV 368

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 60.2 bits (147), Expect = 8e-10
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 18  IVEEIPVFSYD-EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPK 75
           +V  I    ++ ++     ++ K    +N            S D+A YV YTSGTTGNPK
Sbjct: 146 LVHLIHNIQFNGQVEIFEEDTIKIREGTNLHV------PSKSTDLA-YVIYTSGTTGNPK 198

Query: 76  GVMLTHKNLLHQIRSLYDIVPAENGDKFL 104
           G ML HK + +      + +     D+  
Sbjct: 199 GTMLEHKGISNLKVFFENSLNVTEKDRIG 227

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 59.4 bits (145), Expect = 1e-09
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 29  EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQ 87
           + +             +  +       +   +   Y+ YTSG+TGNPKGV ++  NL   
Sbjct: 119 QTVSAEELLENEGGSVSQDQ------WVKEHETF-YIIYTSGSTGNPKGVQISAANLQSF 171

Query: 88  IRSLYDIVPAENGDKFL 104
              +    P   G  FL
Sbjct: 172 TDWICADFPVSGGKIFL 188

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 57.1 bits (139), Expect = 7e-09
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 55  TIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFL 104
            +  D+   Y+ YTSG+TGNPKGV +T+  L+   +   +    + G  FL
Sbjct: 140 AVKGDENF-YIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 9/77 (11%)

Query: 29  EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQ 87
             + +  ++R     S+ A        I  +D A Y+ YTSGTTG PKG + TH N+   
Sbjct: 583 TTLFIDDQTRFEEQASDPAT------AIDPNDPA-YIMYTSGTTGKPKGNITTHANIQGL 635

Query: 88  IRSLYDIVPAENGDKFL 104
           ++ + D +   + D FL
Sbjct: 636 VKHV-DYMAFSDQDTFL 651

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 17  DIVEEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPK 75
           +  + + +    +++D   +S      + D            +  A Y+ YTSG+TG PK
Sbjct: 135 NNFDGVELPPETKVLDTKNQSFIENLSTQDTSDIL--NNYPENLDA-YLLYTSGSTGTPK 191

Query: 76  GVMLTHKNLLHQIRSLYDIVPAENGDKF 103
           GV ++  NL     +   ++        
Sbjct: 192 GVRVSRHNLSSFSDAWGKLIGNVAPKSL 219

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 53.7 bits (130), Expect = 7e-08
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 29  EIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYV-YTSGTTGNPKGVMLTHKNLLHQ 87
            ++ L        ++    R H    ++  DD   Y+ +TSGTTG PKGV ++H NLL  
Sbjct: 119 SLVSLSEIESAKLAEMPYERTH----SVKGDDNY-YIIFTSGTTGQPKGVQISHDNLLSF 173

Query: 88  IRSLYD 93
              + +
Sbjct: 174 TNWMIE 179

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 51.3 bits (124), Expect = 5e-07
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 55  TIGSDDIATYV-YTSGTTGNPKGVMLTHKNL--LHQIRSLYDIVPAENGDKFL 104
              +D IA Y+ ++SGTTG PK +  TH  +  L   +S     P     +FL
Sbjct: 160 CFAADQIA-YINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAP---QMRFL 208

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 72/506 (14%), Positives = 142/506 (28%), Gaps = 160/506 (31%)

Query: 17  DIVEEI-PVFS---YDEIIDLGRE---SRKAFSDSNDARKHYKYETIGSDDIATYVY-TS 68
           D+ +    + S    D II        + + F      ++    + +       Y +  S
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 69  GTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIEL 128
                 +   +  +  + Q   LY+            +   ++V          SR ++ 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQ---------VFAKYNV----------SR-LQP 136

Query: 129 MYTAVRNLKDDLQRYQPHYMISVPLVYETLY--SGIQKQIFTSSAARRVVARALIRISFA 186
                  L+  L   +P   +        +    G  K             +   ++ F 
Sbjct: 137 ----YLKLRQALLELRPAKNV-------LIDGVLGSGKTWVALDVCLS--YKVQCKMDF- 182

Query: 187 YTAFKRIYEGFCLT-RNQKQPSYLVALIDWLWARI----------ICAILWPLHLLAEKL 235
                   + F L  +N   P  ++ ++  L  +I             I   +H +  +L
Sbjct: 183 --------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 236 -------VYKKIQSAIGISKAGVSGGGSL--------PMHIDLFYEAIGVKVQVGYGLTE 280
                   Y+                  L            + F   +  K+ +    T 
Sbjct: 235 RRLLKSKPYEN----------------CLLVLLNVQNAKAWNAF--NLSCKILL---TTR 273

Query: 281 SSPVIAARRPTCNVLGS--VGH-PINHTEIKIVDAETNEVLPAGSKGIVKVRGS----QV 333
              V        + L +    H  ++H  + +   E   +L    K  +  R      +V
Sbjct: 274 FKQVT-------DFLSAATTTHISLDHHSMTLTPDEVKSLL---LK-YLDCRPQDLPREV 322

Query: 334 MQGYFKNPSATKQ--ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 391
           +     NP           D  L T D  W   H              +      TI+ S
Sbjct: 323 LTT---NPRRLSIIAESIRD-GLATWD-NW--KH--------------VNCDKLTTIIES 361

Query: 392 TGENVEPLELEEAALRSSLIRQIVVIGQDQRRPGAIIV-----PDKEEVLMAAKRL---S 443
           +   +EP E  +      +  ++ V       P  ++        K +V++   +L   S
Sbjct: 362 SLNVLEPAEYRK------MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 444 IVHADASELSKEKTISL--LYGELRK 467
           +V        KE TIS+  +Y EL+ 
Sbjct: 416 LVEKQ----PKESTISIPSIYLELKV 437

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	495
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.98
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	98.97
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.92
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	98.91
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.85
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.83

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=8.3e-56  Score=459.72  Aligned_cols=331  Identities=27%  Similarity=0.406  Sum_probs=285.2

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      ...+++|+++|+|||||||.||||++||+++.+....+...++++++|++++.+|++|.+++.. .+.++..|+++++. 
T Consensus       150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~  229 (503)
T 4fuq_A          150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP  229 (503)
T ss_dssp             CCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS
T ss_pred             CCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC
Confidence            3567899999999999999999999999999998888888889999999999999999999765 45567888888774 


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..+++.++  ++|++.++|+++..++.....                                             
T Consensus       230 ~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~---------------------------------------------  262 (503)
T 4fuq_A          230 KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRL---------------------------------------------  262 (503)
T ss_dssp             SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTC---------------------------------------------
T ss_pred             CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCc---------------------------------------------
Confidence              6888999888  899999999999877652100                                             


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceecc
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                    ....++.+|.+++||+++++++ +.+.+.+|.++++.||+||++......
T Consensus       263 ------------------------------~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  312 (503)
T 4fuq_A          263 ------------------------------TKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNP  312 (503)
T ss_dssp             ------------------------------STTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCC
T ss_pred             ------------------------------cccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccC
Confidence                                          0022345699999999999987 555667899999999999998765544


Q ss_pred             CCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011          289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  368 (495)
Q Consensus       289 ~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~  368 (495)
                      .......+++|+|+++++++|+|+++++++|+|+.|||+|+||+++.||+++|+.|++.|..+|||+|||+|++++    
T Consensus       313 ~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----  388 (503)
T 4fuq_A          313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE----  388 (503)
T ss_dssp             SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT----
T ss_pred             CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC----
Confidence            3444567889999999999999998999999999999999999999999999999999999899999999999998    


Q ss_pred             CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011          369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  444 (495)
Q Consensus       369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  444 (495)
                            +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.++|+++++           
T Consensus       389 ------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~-----------  450 (503)
T 4fuq_A          389 ------RGYVHILGRGKDLVIT-GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG-----------  450 (503)
T ss_dssp             ------TCEEEECCSSTTCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-----------
T ss_pred             ------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCC-----------
Confidence                  8999999999999998 8999999999999999999999999987643    46788887653           


Q ss_pred             CcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          445 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                           ...+.++++++++++|+.|+.|     ++|.++++.+.+.|||+
T Consensus       451 -----~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi  489 (503)
T 4fuq_A          451 -----ATIDEAQVLHGLDGQLAKFKMP-----KKVIFVDDLPRNTMGKV  489 (503)
T ss_dssp             -----CCCCHHHHHHHHBTTBCGGGCC-----SEEEEESCCCBCTTSCB
T ss_pred             -----CCCCHHHHHHHHHhhcccCCCC-----CEEEEECCCCCCcccce
Confidence                 4557789999999999999744     88999999999999997

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=3.9e-55  Score=458.34  Aligned_cols=333  Identities=28%  Similarity=0.465  Sum_probs=286.2

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc----ccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceE
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIEL  128 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~  128 (495)
                      ...+++|+++|+|||||||.||||++||+++.+.+.....    .+++.++|++++++|++|.+++.. .+.++..|+++
T Consensus       173 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~  252 (536)
T 3ni2_A          173 VDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPI  252 (536)
T ss_dssp             CCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCE
T ss_pred             CCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEE
Confidence            4567899999999999999999999999999877665433    456788999999999999999866 45668899998


Q ss_pred             Eec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011          129 MYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  205 (495)
Q Consensus       129 ~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (495)
                      ++.   ++..+++.++++++|++.++|+++..+++.....                                        
T Consensus       253 v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------------------------  292 (536)
T 3ni2_A          253 LIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLD----------------------------------------  292 (536)
T ss_dssp             EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGG----------------------------------------
T ss_pred             EEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccc----------------------------------------
Confidence            885   6889999999999999999999998775421100                                        


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHc-CCeeeeccCcccCcc
Q 011011          206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESSP  283 (495)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~~  283 (495)
                                                         ...++.+|.+++||+++++++. .+.+.+ ++++++.||+||++.
T Consensus       293 -----------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~  337 (536)
T 3ni2_A          293 -----------------------------------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGP  337 (536)
T ss_dssp             -----------------------------------GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSS
T ss_pred             -----------------------------------cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccch
Confidence                                               0234456999999999999984 455667 899999999999987


Q ss_pred             ceeccC-----CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCc
Q 011011          284 VIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGD  358 (495)
Q Consensus       284 ~~~~~~-----~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGD  358 (495)
                      +++.+.     ......+++|.|+++++++|+|+++++++|.|+.|||+|+||+++.||+++|+.|++.|+.+|||+|||
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGD  417 (536)
T 3ni2_A          338 VLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD  417 (536)
T ss_dssp             EEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEE
T ss_pred             hhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEccc
Confidence            655431     223466889999999999999999999999999999999999999999999999999998899999999


Q ss_pred             eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHH
Q 011011          359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEE  434 (495)
Q Consensus       359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~  434 (495)
                      +|++++          ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++    +.+.|+|++.++ 
T Consensus       418 l~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~-  485 (536)
T 3ni2_A          418 IGYIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK-  485 (536)
T ss_dssp             EEEECT----------TSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-
T ss_pred             EEEEcC----------CceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCC-
Confidence            999998          8999999999999998 899999999999999999999999999754    346788887653 


Q ss_pred             HHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          435 VLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                     ...+.++++++++++|+.|+.     +++|.++++.+.+.+||+
T Consensus       486 ---------------~~~~~~~l~~~l~~~l~~~~~-----p~~i~~v~~lP~t~~GKi  524 (536)
T 3ni2_A          486 ---------------SQATEDEIKQYISKQVIFYKR-----IKRVFFIEAIPKAPSGKI  524 (536)
T ss_dssp             ---------------CCCCHHHHHHHHHTTSCGGGC-----CSEEEECSCCCBCTTSCB
T ss_pred             ---------------CCCCHHHHHHHHHHhccCCcc-----ccEEEEEecCCCCCCCCe
Confidence                           455778999999999999984     478999999999999997

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=7.5e-55  Score=457.08  Aligned_cols=328  Identities=26%  Similarity=0.410  Sum_probs=283.7

Q ss_pred             CCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcc---cCCCCCcEEEEECChhhHHHHHHhH-hHhhcCceEEec--
Q 011011           58 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGY-FIFSRGIELMYT--  131 (495)
Q Consensus        58 ~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~-~~~~~G~~~~~~--  131 (495)
                      ++|+++|+|||||||.||||++||+++..........   +++.++|++++++|++|.+++...+ .++ .|+++++.  
T Consensus       191 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~  269 (548)
T 2d1s_A          191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK  269 (548)
T ss_dssp             TTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC
T ss_pred             CCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC
Confidence            3899999999999999999999999998887776655   6788999999999999999987644 446 99998874  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++++++|+++++|+++..|.+.....                                             
T Consensus       270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  304 (548)
T 2d1s_A          270 FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLN---------------------------------------------  304 (548)
T ss_dssp             CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGG---------------------------------------------
T ss_pred             CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccc---------------------------------------------
Confidence             6899999999999999999999998875421000                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccceecc
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                    ...++.+|.+++||+++++++ +.+.+.+ +.++++.||+||++..++..
T Consensus       305 ------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~  354 (548)
T 2d1s_A          305 ------------------------------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT  354 (548)
T ss_dssp             ------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC
T ss_pred             ------------------------------cccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeec
Confidence                                          012345689999999999987 5555667 68899999999998877665


Q ss_pred             CCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011          289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  368 (495)
Q Consensus       289 ~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~  368 (495)
                      .......+++|+|+++++++|+|+++++++++|+.|||+++||+++.|||++|+.|++.|+.+|||+|||+|++++    
T Consensus       355 ~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----  430 (548)
T 2d1s_A          355 PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----  430 (548)
T ss_dssp             CTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----
T ss_pred             CcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----
Confidence            4444567899999999999999988899999999999999999999999999999999998899999999999998    


Q ss_pred             CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011          369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  444 (495)
Q Consensus       369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  444 (495)
                            +|+++|+||+||+|++ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.|+|+++++           
T Consensus       431 ------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~-----------  492 (548)
T 2d1s_A          431 ------EKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESG-----------  492 (548)
T ss_dssp             ------TCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-----------
T ss_pred             ------CCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCC-----------
Confidence                  8999999999999997 9999999999999999999999999998653    56788887643           


Q ss_pred             CcCCccccChHHHHHHHHHHHHhHhccCCCccc-cEEEecCCCCCCCCee
Q 011011          445 VHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCL  493 (495)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  493 (495)
                           ...+.++++++++++|+.|+.     ++ +|.++++.+.+.+||+
T Consensus       493 -----~~~~~~~l~~~~~~~l~~~~~-----p~~~i~~v~~lP~t~~GKi  532 (548)
T 2d1s_A          493 -----KNMTEKEVMDYVASQVSNAKR-----LRGGVRFVDEVPKGLTGKI  532 (548)
T ss_dssp             -----CCCCHHHHHHHHHTTSCGGGS-----CTTCEEECSSCCBCTTSCB
T ss_pred             -----CCCCHHHHHHHHHHhcccccc-----ccccEEEccCCCCCCcchh
Confidence                 345678999999999998874     46 8999999999999997

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.9e-54  Score=453.31  Aligned_cols=331  Identities=19%  Similarity=0.297  Sum_probs=282.2

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH--hHhHhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~--~~~~~~~G~~~~~~  131 (495)
                      ....++|+++|+|||||||.||||++||+++.+.+......++++++|++++++|++|.+++..  .+.++..|+++++.
T Consensus       177 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  256 (539)
T 1mdb_A          177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS  256 (539)
T ss_dssp             CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence            3457899999999999999999999999999988888777788999999999999999999875  56678999999885


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++.++|+++..+++.....                                           
T Consensus       257 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------  293 (539)
T 1mdb_A          257 PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------------------------------  293 (539)
T ss_dssp             SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------------------------
T ss_pred             CCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------------------------
Confidence               6889999999999999999999998887643210                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                      ...++.+|.+++||+++++++ +.+.+.+|+++++.||+||++..+..
T Consensus       294 --------------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  341 (539)
T 1mdb_A          294 --------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTR  341 (539)
T ss_dssp             --------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECC
T ss_pred             --------------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccC
Confidence                                            023345699999999999987 45556789999999999996543332


Q ss_pred             cCCC-CCCccccccCcCC-cEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          288 RRPT-CNVLGSVGHPINH-TEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       288 ~~~~-~~~~~~~G~p~~~-~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      .... ....+++|+|+++ .+++|+| +.++++|+|+.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++++ 
T Consensus       342 ~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~-  419 (539)
T 1mdb_A          342 LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR-  419 (539)
T ss_dssp             TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT-
T ss_pred             CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC-
Confidence            1111 1234689999976 4899999 4589999999999999999999999999999999998899999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~  441 (495)
                               +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.|+|+++.         
T Consensus       420 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~---------  480 (539)
T 1mdb_A          420 ---------DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD---------  480 (539)
T ss_dssp             ---------TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS---------
T ss_pred             ---------CCcEEEeccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC---------
Confidence                     8999999999999996 9999999999999999999999999998653    5678888752         


Q ss_pred             cCCCcCCccccChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          442 LSIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                              ...+.++++++++++ |+.|+.     +++|.++++.+.+.|||+
T Consensus       481 --------~~~~~~~l~~~l~~~~L~~~~~-----P~~i~~v~~lP~t~~GKi  520 (539)
T 1mdb_A          481 --------EAPKAAELKAFLRERGLAAYKI-----PDRVEFVESFPQTGVGKV  520 (539)
T ss_dssp             --------SCCCHHHHHHHHHHTTCCGGGS-----CSEEEECSSCCBCTTSCB
T ss_pred             --------CCCCHHHHHHHHHhCCCCcccC-----CCEEEEeccCCCCCCcCE
Confidence                    234678899999997 999874     488999999999999997

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=5.8e-55  Score=458.44  Aligned_cols=330  Identities=25%  Similarity=0.363  Sum_probs=205.4

Q ss_pred             CCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcc---cCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           57 GSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        57 ~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      .++|+++|+|||||||.||||++||+++..........   +++.++|++++++|++|.+++...+.++..|+++++.  
T Consensus       188 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~  267 (550)
T 3rix_A          188 RDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYR  267 (550)
T ss_dssp             TTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             CCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCC
Confidence            46889999999999999999999999998877666544   4678899999999999999998778889999999885  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++++++|++.++|+++..++......                                             
T Consensus       268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  302 (550)
T 3rix_A          268 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID---------------------------------------------  302 (550)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGG---------------------------------------------
T ss_pred             CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcccc---------------------------------------------
Confidence             6889999999999999999999998876531100                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCe-eeeccCcccCccceecc
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVK-VQVGYGLTESSPVIAAR  288 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~-v~~~YG~TE~~~~~~~~  288 (495)
                                                    ...++.+|.+++||+++++++ +.+.+.++.. +++.||+||++..++..
T Consensus       303 ------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~  352 (550)
T 3rix_A          303 ------------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT  352 (550)
T ss_dssp             ------------------------------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC
T ss_pred             ------------------------------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecC
Confidence                                          012345699999999999987 5555678875 89999999999888777


Q ss_pred             CCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011          289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  368 (495)
Q Consensus       289 ~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~  368 (495)
                      .......+++|+|+++++++|+|+++++++++|+.|||+|+||+++.||+++|+.|++.|+.+|||+|||+|++++    
T Consensus       353 ~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~----  428 (550)
T 3rix_A          353 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE----  428 (550)
T ss_dssp             CTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----
T ss_pred             CCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----
Confidence            7666778899999999999999998999999999999999999999999999999999998899999999999998    


Q ss_pred             CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011          369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  444 (495)
Q Consensus       369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  444 (495)
                            +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.++|++.++           
T Consensus       429 ------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~-----------  490 (550)
T 3rix_A          429 ------DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG-----------  490 (550)
T ss_dssp             ------TCCEEEC-------------------------------------------------------------------
T ss_pred             ------CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCC-----------
Confidence                  8999999999999998 8999999999999999999999999998764    35577776543           


Q ss_pred             CcCCccccChHHHHHHHHHHHHhHhccCCCccc-cEEEecCCCCCCCCee
Q 011011          445 VHADASELSKEKTISLLYGELRKWTSKCSFQIG-PIHVVDEPFTVNFLCL  493 (495)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  493 (495)
                           ...+.++++++++++|+.++     .++ .|.++++.+.+.+||+
T Consensus       491 -----~~~~~~~l~~~~~~~l~~~~-----~~~~~i~~v~~lP~t~~GKi  530 (550)
T 3rix_A          491 -----KTMTEKEIVDYVASQVTTAK-----KLRGGVVFVDEVPKGLTGKL  530 (550)
T ss_dssp             --------------------------------------------------
T ss_pred             -----CCCCHHHHHHHHHHhccccc-----ccCCceEEEeecCCCCCcce
Confidence                 34466789999999998875     344 6899999999999986

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=3.1e-54  Score=447.90  Aligned_cols=335  Identities=26%  Similarity=0.363  Sum_probs=277.7

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      ...+++|+++|+|||||||.||||++||+++.+....+...+++.++|++++.+|++|.+++.. .+.++..|+++++. 
T Consensus       150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~  229 (505)
T 3nyq_A          150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG  229 (505)
T ss_dssp             CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred             CCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence            3567899999999999999999999999999998888888889999999999999999999876 56678999999874 


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..+++.+ ++++|.++++|+++..++........                                          
T Consensus       230 ~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------------------------  266 (505)
T 3nyq_A          230 RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE------------------------------------------  266 (505)
T ss_dssp             SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH------------------------------------------
T ss_pred             CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch------------------------------------------
Confidence              578888888 78999999999999888764321100                                          


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceecc
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                    ....++.+|.+++||++++++. +.+.+.+++++++.||+||++..++..
T Consensus       267 ------------------------------~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~  316 (505)
T 3nyq_A          267 ------------------------------LAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVR  316 (505)
T ss_dssp             ------------------------------HHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECC
T ss_pred             ------------------------------hhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccC
Confidence                                          0011223489999999999987 455566799999999999998777665


Q ss_pred             CCCCCCccccccCcCCcEEEEEeCCCCCcCCC---CCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          289 RPTCNVLGSVGHPINHTEIKIVDAETNEVLPA---GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       289 ~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~---g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      .......+++|+|+++++++|+|++ +++++.   |+.|||+|+||+++.|||++|+.|++.|..+|||+|||+|++++ 
T Consensus       317 ~~~~~~~~~vG~p~~~~~~~i~d~~-g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~-  394 (505)
T 3nyq_A          317 ADGEPRAGTVGVPLPGVELRLVEED-GTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP-  394 (505)
T ss_dssp             TTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT-
T ss_pred             CCCCCCCCCcccCCCCCEEEEECCC-CCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC-
Confidence            5555667899999999999999954 777765   89999999999999999999999999999899999999999998 


Q ss_pred             CCCCCccccCCeEEEEccc-cceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRA-KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAK  440 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~-~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~  440 (495)
                               +|+++|+||+ ||+|++ +|++|+|.|||++|.+||.|.+|+|++.++    +.+.|+|++...       
T Consensus       395 ---------dG~l~~~GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~-------  457 (505)
T 3nyq_A          395 ---------DGYVRIVGRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADP-------  457 (505)
T ss_dssp             ---------TSCEEEEEESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESST-------
T ss_pred             ---------CccEEEeCCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCC-------
Confidence                     8999999998 588997 999999999999999999999999998865    357789988642       


Q ss_pred             HcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          441 RLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       441 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                              ....+.++++++++++|+.|+.|     ++|.++++.+.+.|||+
T Consensus       458 --------~~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi  497 (505)
T 3nyq_A          458 --------AAPPALGTLADHVAARLAPHKRP-----RVVRYLDAVPRNDMGKI  497 (505)
T ss_dssp             --------TSCCCHHHHHHHHHHHTCGGGSC-----SEEEECSCCCC------
T ss_pred             --------CCCCCHHHHHHHHHhhCCCCcCc-----cEEEEECCCCCCCCcCe
Confidence                    13456789999999999999854     78999999999999997

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=1.9e-54  Score=454.38  Aligned_cols=333  Identities=24%  Similarity=0.403  Sum_probs=264.0

Q ss_pred             CCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---chH
Q 011011           58 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---AVR  134 (495)
Q Consensus        58 ~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---~~~  134 (495)
                      ++|+++|+|||||||.||||++||+++.+.+..+...+++.++|++++++|++|.+++...+.++..|+++++.   ++.
T Consensus       179 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~  258 (549)
T 3g7s_A          179 EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQE  258 (549)
T ss_dssp             TTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHH
T ss_pred             CCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHH
Confidence            38999999999999999999999999999888888888999999999999999999988777778889988874   789


Q ss_pred             hHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHH
Q 011011          135 NLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALID  214 (495)
Q Consensus       135 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  214 (495)
                      .+++.++++++|+++++|+++..|+........                                               
T Consensus       259 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----------------------------------------------  291 (549)
T 3g7s_A          259 MLAENIEKYKGTFSWAVPPALNVLVNTLESSNK-----------------------------------------------  291 (549)
T ss_dssp             HHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC-----------------------------------------------
T ss_pred             HHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc-----------------------------------------------
Confidence            999999999999999999999988765322100                                               


Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHH----cC---CeeeeccCcccCcccee
Q 011011          215 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEA----IG---VKVQVGYGLTESSPVIA  286 (495)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~----~g---~~v~~~YG~TE~~~~~~  286 (495)
                                                ...++.+|.+++||+++++++ +.+.+.    ++   +++++.||+||++.+++
T Consensus       292 --------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  345 (549)
T 3g7s_A          292 --------------------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVT  345 (549)
T ss_dssp             --------------------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEE
T ss_pred             --------------------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhh
Confidence                                      012345699999999999987 444444    56   89999999999998777


Q ss_pred             ccCCCC-CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccC--CCC--ccccCceee
Q 011011          287 ARRPTC-NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALD--EDG--WLNTGDIGW  361 (495)
Q Consensus       287 ~~~~~~-~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~--~~~--~~~TGDl~~  361 (495)
                      ...... ...+++|.|+++++++|+|+++++++|.|+.|||+|+||+++.|||++|+.|++.|.  .+|  ||+|||+|+
T Consensus       346 ~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~  425 (549)
T 3g7s_A          346 TNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGF  425 (549)
T ss_dssp             ECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEE
T ss_pred             cCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEE
Confidence            655433 456789999999999999988899999999999999999999999999999999983  466  999999999


Q ss_pred             eccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHH
Q 011011          362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  437 (495)
Q Consensus       362 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~  437 (495)
                      +++          +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.|+|+++++.   
T Consensus       426 ~~~----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~---  491 (549)
T 3g7s_A          426 IDE----------EGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEY---  491 (549)
T ss_dssp             ECT----------TSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTT---
T ss_pred             EcC----------CceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCc---
Confidence            998          8999999999999998 9999999999999999999999999998764    467888876430   


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          438 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                 ....+.++++++++++|+.|+.|     ++|.++++.+.+.|||+
T Consensus       492 -----------~~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi  531 (549)
T 3g7s_A          492 -----------RGKVDEEDIIEWVRERISGYKRV-----REVEFVEELPRTASGKL  531 (549)
T ss_dssp             -----------TTSCCHHHHHHHHHTTCC----------CCCCEEEECC-------
T ss_pred             -----------cCcCCHHHHHHHHHHhccCcccc-----eEEEEeccCCCCCCcCE
Confidence                       13457789999999999999854     78889999999999997

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=3.1e-53  Score=453.22  Aligned_cols=336  Identities=17%  Similarity=0.176  Sum_probs=280.1

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHH-HHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQI-RSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      ..+++|+++|+|||||||.||||++||++++... ..+...+++.++|++++.+|++|++++.. .+.++..|+++++. 
T Consensus       252 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~  331 (652)
T 1pg4_A          252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE  331 (652)
T ss_dssp             CEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred             ccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence            4568999999999999999999999999987655 34555678999999999999999999854 66789999998874 


Q ss_pred             ------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCC
Q 011011          132 ------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQ  205 (495)
Q Consensus       132 ------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (495)
                            ++..+++.++++++|++.++|+++..|.+......                                       
T Consensus       332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------------------------------------  372 (652)
T 1pg4_A          332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI---------------------------------------  372 (652)
T ss_dssp             SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT---------------------------------------
T ss_pred             CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcccc---------------------------------------
Confidence                  57889999999999999999999987755311000                                       


Q ss_pred             chhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHcC---CeeeeccCcccC
Q 011011          206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAIG---VKVQVGYGLTES  281 (495)
Q Consensus       206 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~g---~~v~~~YG~TE~  281 (495)
                                                        ....++.+|.+++||+++++++. .+.+.+|   +++++.||+||+
T Consensus       373 ----------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~  418 (652)
T 1pg4_A          373 ----------------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET  418 (652)
T ss_dssp             ----------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred             ----------------------------------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccc
Confidence                                              00134556999999999999874 4556677   899999999999


Q ss_pred             ccceeccCCC--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc--CCcchhccCCchhhhhccC--CCCccc
Q 011011          282 SPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDGWLN  355 (495)
Q Consensus       282 ~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~--p~~~~gY~~~~~~t~~~~~--~~~~~~  355 (495)
                      +..++...+.  ....+++|+|+++++++|+|+ .++++|.|+.|||+|+|  |++++|||++|+.+.+.|.  .+|||+
T Consensus       419 ~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~-~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~  497 (652)
T 1pg4_A          419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF  497 (652)
T ss_dssp             SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-TCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEE
T ss_pred             ccceecCCCCCcCccCCccccCcCCCeEEEECC-CCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEE
Confidence            8766554432  356789999999999999995 58899999999999999  7999999999999988763  378999


Q ss_pred             cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecC
Q 011011          356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPD  431 (495)
Q Consensus       356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~  431 (495)
                      |||+|++++          ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++    +.+.|+|+++
T Consensus       498 TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~  566 (652)
T 1pg4_A          498 SGDGARRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLN  566 (652)
T ss_dssp             EEEEEEECT----------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEEC
T ss_pred             CCcEEEEcC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEEC
Confidence            999999998          8999999999999998 899999999999999999999999999764    3578999987


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          432 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ++.             ...+...++++++++++|+.|+.     ++.|.++++.+.+.+||+
T Consensus       567 ~~~-------------~~~~~~~~~l~~~l~~~l~~~~~-----P~~i~~v~~lP~T~sGKi  610 (652)
T 1pg4_A          567 HGE-------------EPSPELYAEVRNWVRKEIGPLAT-----PDVLHWTDSLPKTRSGKI  610 (652)
T ss_dssp             TTC-------------CCCHHHHHHHHHHHHHHTCGGGC-----CSEEEECSCCCBCTTSCB
T ss_pred             CCC-------------CCCHHHHHHHHHHHHHhCCCCcC-----CeEEEEcCCCCCCCCccc
Confidence            530             00111247788999999988874     488999999999999997

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=9.1e-53  Score=437.97  Aligned_cols=357  Identities=24%  Similarity=0.269  Sum_probs=290.1

Q ss_pred             CCcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCC
Q 011011           20 EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN   99 (495)
Q Consensus        20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~   99 (495)
                      ..+..++++++........            .......++|+++|+|||||||.||||++||+++.+....+...+++.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~  183 (511)
T 3e7w_A          116 QQIQTVSAEELLENEGGSV------------SQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSG  183 (511)
T ss_dssp             CSSCEEEHHHHHTSCSCCC------------CGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTT
T ss_pred             cccceecHhhhhccccCCc------------cccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCc
Confidence            3466778887765432210            1123457899999999999999999999999999998888888889999


Q ss_pred             CcEEEEECChhhHHHHHHhHhHhhcCceEEec------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHH
Q 011011          100 GDKFLSMLPPWHVYERACGYFIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAAR  173 (495)
Q Consensus       100 ~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  173 (495)
                      +|++++++|++|.+++...+.++..|+++++.      ++..+++.++++++|++.++|+++..++.....         
T Consensus       184 ~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------  254 (511)
T 3e7w_A          184 GKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGF---------  254 (511)
T ss_dssp             TCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTC---------
T ss_pred             cceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc---------
Confidence            99999999999999987778889999999874      577899999999999999999998876542100         


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEec
Q 011011          174 RVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG  253 (495)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g  253 (495)
                                                                                        ....+..+|.+++|
T Consensus       255 ------------------------------------------------------------------~~~~~~~l~~~~~~  268 (511)
T 3e7w_A          255 ------------------------------------------------------------------SQDLLPHADTFMFC  268 (511)
T ss_dssp             ------------------------------------------------------------------STTTCTTCCEEEEC
T ss_pred             ------------------------------------------------------------------ccccCCcccEEEEe
Confidence                                                                              00223455899999


Q ss_pred             cCCCChhH-HHHHHHc-CCeeeeccCcccCccceeccCC-----CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEE
Q 011011          254 GGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRP-----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV  326 (495)
Q Consensus       254 g~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~-----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl  326 (495)
                      |+++++++ +.+.+.+ ++++++.||+||++..++....     ......++|.|+++++++|+|+ .++++|+|+.|||
T Consensus       269 G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g~~GEl  347 (511)
T 3e7w_A          269 GEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDE-EGQPLPEGEKGEI  347 (511)
T ss_dssp             SSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECT-TSCBCCTTCCEEE
T ss_pred             cCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECC-CCCCCCCCCceEE
Confidence            99999987 5555667 8999999999999876654321     1234567999999999999995 4899999999999


Q ss_pred             EEccCCcchhccCCchhhhhccCC-CC--ccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHH
Q 011011          327 KVRGSQVMQGYFKNPSATKQALDE-DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE  403 (495)
Q Consensus       327 ~v~~p~~~~gY~~~~~~t~~~~~~-~~--~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~  403 (495)
                      +|+||+++.|||++|+.|+++|.. ++  ||+|||+|++ +          ||+++++||+||+|++ +|++|+|.|||+
T Consensus       348 ~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~  415 (511)
T 3e7w_A          348 VIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-Q----------DGQIFCQGRLDFQIKL-HGYRMELEEIEF  415 (511)
T ss_dssp             EEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-E----------TTEEEEEEESSSEEEE-TTEEEEHHHHHH
T ss_pred             EEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-c----------CCeEEEEccccCEEEE-CCEEeCHHHHHH
Confidence            999999999999999999999832 23  7999999998 4          6999999999999998 999999999999


Q ss_pred             HHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccE
Q 011011          404 AALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPI  479 (495)
Q Consensus       404 ~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~  479 (495)
                      +|.+||.|.+|+|++.++    +.+.|+|++.++..            .......++++++++++|+.|+     .+++|
T Consensus       416 ~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~------------~~~~~~~~~l~~~l~~~L~~~~-----~P~~~  478 (511)
T 3e7w_A          416 HVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEF------------EKEFQLTSAIKKELAASLPAYM-----IPRKF  478 (511)
T ss_dssp             HHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCC------------SSHHHHHHHHHHHHHHHSCGGG-----SCSEE
T ss_pred             HHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccc------------cchhhHHHHHHHHHHhhCchhh-----CCeeE
Confidence            999999999999998754    35778888864300            0000113678888888888887     44889


Q ss_pred             EEecCCCCCCCCee
Q 011011          480 HVVDEPFTVNFLCL  493 (495)
Q Consensus       480 ~~~~~~~~~~~~~l  493 (495)
                      .++++.+.+.+||+
T Consensus       479 ~~v~~lP~t~~GKi  492 (511)
T 3e7w_A          479 IYQDHIQMTANGKI  492 (511)
T ss_dssp             EECSCCCBCTTSCB
T ss_pred             EEeccCCCCCCcCc
Confidence            99999999999997

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=2.3e-53  Score=442.88  Aligned_cols=329  Identities=26%  Similarity=0.364  Sum_probs=280.4

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      ....++|+++|+|||||||.||||++||+++.+.+..+...+++.++|++++++|++|.+++...+.++..|+++++.  
T Consensus       165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~  244 (517)
T 3r44_A          165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQ  244 (517)
T ss_dssp             CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCC
Confidence            456789999999999999999999999999999888888888999999999999999999998766665589888874  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++++++|++.++|+++..|.......                                             
T Consensus       245 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------------  279 (517)
T 3r44_A          245 FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA---------------------------------------------  279 (517)
T ss_dssp             CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH---------------------------------------------
T ss_pred             CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc---------------------------------------------
Confidence             6899999999999999999999998876532111                                             


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                    ...++.+|.+++||+++++++.+.+...++++++.||+||++..++....
T Consensus       280 ------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  329 (517)
T 3r44_A          280 ------------------------------ELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLS  329 (517)
T ss_dssp             ------------------------------HCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGTTCEEEECG
T ss_pred             ------------------------------cCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeecccccccceeecCC
Confidence                                          01234569999999999999866666669999999999999876665432


Q ss_pred             C--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011          291 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  368 (495)
Q Consensus       291 ~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~  368 (495)
                      .  ....+++|.|.++++++++|+ ++.+++.| .|||+|+||+++.||+++|+.|++.| .+|||+|||+|++++    
T Consensus       330 ~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~----  402 (517)
T 3r44_A          330 EDALRKAGSAGRATMFTDVAVRGD-DGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDD----  402 (517)
T ss_dssp             GGTTTTTTCCBEECTTEEEEEECT-TSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECT----
T ss_pred             ccccccCCCCCcCCCCeEEEEECC-CCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcC----
Confidence            2  345688999999999999994 57888888 89999999999999999999999999 589999999999998    


Q ss_pred             CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011          369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  444 (495)
Q Consensus       369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  444 (495)
                            +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.++|+.. +           
T Consensus       403 ------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~-~-----------  463 (517)
T 3r44_A          403 ------EGYLYIKDRLKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVAD-Q-----------  463 (517)
T ss_dssp             ------TSCEEEEECGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEEC-T-----------
T ss_pred             ------CeeEEEecCCcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECC-C-----------
Confidence                  8999999999999997 9999999999999999999999999998654    344555332 1           


Q ss_pred             CcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          445 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                           ...+.++++++++++|+.|+.|     ++|.++++.+.+.+||+
T Consensus       464 -----~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi  502 (517)
T 3r44_A          464 -----NEVSEQQIVEYCGTRLARYKLP-----KKVIFAEAIPRNPTGKI  502 (517)
T ss_dssp             -----TTCCHHHHHHHHHHHSCGGGSC-----SEEEECSCCCBCTTCCB
T ss_pred             -----CCCCHHHHHHHHHHhCCCCCCC-----CEEEEECCCCCCCCcCc
Confidence                 3457789999999999999844     78999999999999997

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=6e-53  Score=444.99  Aligned_cols=332  Identities=22%  Similarity=0.278  Sum_probs=273.8

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT--  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~--  131 (495)
                      ...++|+++|+|||||||.||||+++|.++..........+++.+++++++..|++|..+... .+.++..|+++++.  
T Consensus       221 ~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~  300 (580)
T 3etc_A          221 STKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDY  300 (580)
T ss_dssp             SCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEEC
T ss_pred             CCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecC
Confidence            467899999999999999999999999998877766666678899999999999999888765 45668889888764  


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++.++|+++..|......                                            
T Consensus       301 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------------------------------------------  336 (580)
T 3etc_A          301 DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLS--------------------------------------------  336 (580)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccc--------------------------------------------
Confidence               588999999999999999999999877542000                                            


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                      ...++.+|.+++||+++++++ +.+.+.+|+++++.||+||++..++.
T Consensus       337 --------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~  384 (580)
T 3etc_A          337 --------------------------------HYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIAT  384 (580)
T ss_dssp             ----------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEEC
T ss_pred             --------------------------------cCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeec
Confidence                                            022345699999999999997 55666789999999999999877766


Q ss_pred             cCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc-----CCcchhccCCchhhhhccCCCCccccCceeee
Q 011011          288 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-----SQVMQGYFKNPSATKQALDEDGWLNTGDIGWI  362 (495)
Q Consensus       288 ~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~-----p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~  362 (495)
                      .+......+++|+|+++++++|+|++ ++++|+|+.|||+|+|     ++++.||+++|+.|++.|. +|||+|||+|++
T Consensus       385 ~~~~~~~~~~~G~p~~~~~v~ivd~~-g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~  462 (580)
T 3etc_A          385 FPWMEPKPGSIGKPTPGYKIELMDRD-GRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWM  462 (580)
T ss_dssp             CTTSCCCTTCCBEECTTCEEEEECTT-SCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEEEEEEE
T ss_pred             CCCCCCCCCccccCCCCCEEEEECCC-CCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC-CCEEecCcEEEE
Confidence            65556678899999999999999965 8999999999999997     7899999999999999995 899999999999


Q ss_pred             ccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHH
Q 011011          363 APHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMA  438 (495)
Q Consensus       363 ~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~  438 (495)
                      ++          ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.|+|++.++.    
T Consensus       463 d~----------dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~----  527 (580)
T 3etc_A          463 DE----------DGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDY----  527 (580)
T ss_dssp             CT----------TSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC----
T ss_pred             CC----------CCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCC----
Confidence            98          8999999999999998 7999999999999999999999999998654    466888876530    


Q ss_pred             HHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          439 AKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                               ...+...+++++++++.|+.|+.     ++.|.++++.+.+.+||+
T Consensus       528 ---------~~~~~~~~~l~~~l~~~l~~~~~-----P~~i~~v~~lP~t~sGKi  568 (580)
T 3etc_A          528 ---------TPSDSLKNELQDHVKNVTAPYKY-----PRIIEFVPELPKTISGKI  568 (580)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHSCGGGC-----CSEEEEECC---------
T ss_pred             ---------CCCHHHHHHHHHHHHhhCCCccC-----CeEEEEeCCCCCCCCcCC
Confidence                     00122346888889988888874     478999999999999997

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.5e-53  Score=441.38  Aligned_cols=330  Identities=21%  Similarity=0.286  Sum_probs=278.2

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCC--CCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPA--ENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~  131 (495)
                      ...++|+++|+|||||||.||||++||+++.+....+...+++  .++|++++.+|++|.+++.. .+.++..|+++++.
T Consensus       149 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~  228 (504)
T 1t5h_X          149 QREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV  228 (504)
T ss_dssp             CCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeC
Confidence            4578999999999999999999999999999888777777777  78899999999999999854 56678899999884


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|+++++|+++..|+.......                                          
T Consensus       229 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------  266 (504)
T 1t5h_X          229 EEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG------------------------------------------  266 (504)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT------------------------------------------
T ss_pred             CCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc------------------------------------------
Confidence               68899999999999999999999988865421000                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                     ....++.+|.+++||+++++++ +.+.+.++.++++.||+||++.....
T Consensus       267 -------------------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  315 (504)
T 1t5h_X          267 -------------------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYM  315 (504)
T ss_dssp             -------------------------------CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEE
T ss_pred             -------------------------------ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccccccc
Confidence                                           0012345699999999999987 55556779999999999999432222


Q ss_pred             cCCCCCCccccccCcCCcEEEEEeCCCC--CcCCCCCccEEEEc-cCCcchhccCCchhhhhccCCCCccccCceeeecc
Q 011011          288 RRPTCNVLGSVGHPINHTEIKIVDAETN--EVLPAGSKGIVKVR-GSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  364 (495)
Q Consensus       288 ~~~~~~~~~~~G~p~~~~~v~i~d~~~~--~~~~~g~~GEl~v~-~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~  364 (495)
                       .  ....+++|.|.++++++++|++++  +++|+|+.|||+|+ ||.++.||+++|+.|++.| .+|||+|||+|++++
T Consensus       316 -~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~  391 (504)
T 1t5h_X          316 -R--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTP  391 (504)
T ss_dssp             -E--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECT
T ss_pred             -c--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECC
Confidence             1  245678999999999999996532  89999999999999 9999999999999999999 689999999999998


Q ss_pred             CCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHH
Q 011011          365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  440 (495)
Q Consensus       365 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~  440 (495)
                                ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.|+|+++++       
T Consensus       392 ----------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~-------  453 (504)
T 1t5h_X          392 ----------EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG-------  453 (504)
T ss_dssp             ----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTT-------
T ss_pred             ----------CceEEEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCC-------
Confidence                      8999999999999997 9999999999999999999999999998653    57799998753       


Q ss_pred             HcCCCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          441 RLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       441 ~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                               ...+.+++++++++ +|+.|+     .+++|.++++.+.+.+||+
T Consensus       454 ---------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  493 (504)
T 1t5h_X          454 ---------ETLSADALDTFCRSSELADFK-----RPKRYFILDQLPKNALNKV  493 (504)
T ss_dssp             ---------CCCCHHHHHHHHHTSSCCGGG-----SCSEEEECSCCCBCTTSCB
T ss_pred             ---------cCcCHHHHHHHHhhccCcccc-----cceEEEEhhhCCCCCCCCE
Confidence                     34567889999998 899987     4589999999999999997

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=9.7e-54  Score=448.14  Aligned_cols=330  Identities=26%  Similarity=0.412  Sum_probs=243.9

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHH--hhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRS--LYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-  131 (495)
                      ..+++|+++|+|||||||.||||++||+++......  ....+++.++|++++++|++|.+++...+.++..|+++++. 
T Consensus       172 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~  251 (541)
T 1v25_A          172 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPG  251 (541)
T ss_dssp             CCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECT
T ss_pred             cCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeC
Confidence            456789999999999999999999999999876655  23456788999999999999999987677788899998874 


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++.++|+++..|++.....                                           
T Consensus       252 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------  288 (541)
T 1v25_A          252 PRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST-------------------------------------------  288 (541)
T ss_dssp             TCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH-------------------------------------------
T ss_pred             CCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhcc-------------------------------------------
Confidence               6889999999999999999999998887643221                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceecc
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                      ...++.+|.+++||+++++++.+.++.+|+++++.||+||++.+++..
T Consensus       289 --------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~  336 (541)
T 1v25_A          289 --------------------------------GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQN  336 (541)
T ss_dssp             --------------------------------TCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEEC
T ss_pred             --------------------------------CCcchhccEEEECCCCCCHHHHHHHHHhCCceeecccccccccceecc
Confidence                                            022345689999999999998554577899999999999998776654


Q ss_pred             CCCC-----------CCccccccCcCCcEEEEEeCCCCCcCCC-C-CccEEEEccCCcchhccCCchhhhhccCCCCccc
Q 011011          289 RPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPA-G-SKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLN  355 (495)
Q Consensus       289 ~~~~-----------~~~~~~G~p~~~~~v~i~d~~~~~~~~~-g-~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~  355 (495)
                      ....           ...+++|+|+++++++|+|++ ++++|. | +.|||+|+||+++.|||++|+.|+++|..+|||+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~  415 (541)
T 1v25_A          337 FVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFR  415 (541)
T ss_dssp             CCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTT-SCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEE
T ss_pred             cccccccccCccccccccCCCCCcCCCcEEEEECCC-CCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeE
Confidence            3321           134689999999999999954 778874 3 6899999999999999999999999998899999


Q ss_pred             cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecC
Q 011011          356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPD  431 (495)
Q Consensus       356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~  431 (495)
                      |||+|++++          +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.|+|++.
T Consensus       416 TGDlg~~d~----------dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~  484 (541)
T 1v25_A          416 TGDIAVWDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR  484 (541)
T ss_dssp             EEEEEEECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---
T ss_pred             cCCEEEEcC----------CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC
Confidence            999999998          8999999999999997 9999999999999999999999999998653    566777765


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          432 KEEVLMAAKRLSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      .                 ...+.+++++++++ +|+.|+     .+++|.++++.+.+.+||+
T Consensus       485 ~-----------------~~~~~~~l~~~~~~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  525 (541)
T 1v25_A          485 G-----------------EKPTPEELNEHLLKAGFAKWQ-----LPDAYVFAEEIPRTSAGKF  525 (541)
T ss_dssp             ---------------------------------CCCTTT-----SCSBC--------------
T ss_pred             C-----------------CCCCHHHHHHHHHhccCcccc-----CCcEEEEeCCCCCCCccCe
Confidence            1                 22345678888888 788776     4578889999999999986

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=8.6e-54  Score=448.83  Aligned_cols=331  Identities=23%  Similarity=0.329  Sum_probs=209.4

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH--hHhHhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~--~~~~~~~G~~~~~~  131 (495)
                      ....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++..  .+.++..|+++++.
T Consensus       186 ~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~  265 (544)
T 3o83_A          186 SSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA  265 (544)
T ss_dssp             CCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             ccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence            3457899999999999999999999999999998888888889999999999999999999875  56678899999884


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++.++|+++..++......                                           
T Consensus       266 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------------  302 (544)
T 3o83_A          266 PNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY-------------------------------------------  302 (544)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT-------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc-------------------------------------------
Confidence               6889999999999999999999998887643211                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                      ...++.+|.+++||+++++++ +.+.+.+++++++.||+||++..+..
T Consensus       303 --------------------------------~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  350 (544)
T 3o83_A          303 --------------------------------KDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTR  350 (544)
T ss_dssp             --------------------------------HHHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECC
T ss_pred             --------------------------------cccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeec
Confidence                                            022345699999999999987 45556679999999999998754443


Q ss_pred             cCCC-CCCccccccCc-CCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          288 RRPT-CNVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       288 ~~~~-~~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      .... ....+++|+|+ ++++++|+| ++++++|+|+.|||+|+||+++.||+++|+.|++.|+.+|||+|||+|++++ 
T Consensus       351 ~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~-  428 (544)
T 3o83_A          351 LDDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP-  428 (544)
T ss_dssp             TTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT-
T ss_pred             CCCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC-
Confidence            2211 12346789996 899999999 6689999999999999999999999999999999998899999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~  441 (495)
                               +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.|+|++..         
T Consensus       429 ---------dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~---------  489 (544)
T 3o83_A          429 ---------DGNLRVVGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN---------  489 (544)
T ss_dssp             ---------TSCEEEEEEEC------------------------------------------------------------
T ss_pred             ---------CCCEEEEeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC---------
Confidence                     8999999999999996 9999999999999999999999999998764    4557777653         


Q ss_pred             cCCCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          442 LSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                              ...+..++++++++ .|+.|+.|     ++|.++++.+.+.|||+
T Consensus       490 --------~~~~~~~l~~~~~~~~l~~~~~P-----~~i~~v~~lP~t~~GKi  529 (544)
T 3o83_A          490 --------PELKAVVLRRHLMELGIAQYKLP-----DQIKLIESLPLTAVGKV  529 (544)
T ss_dssp             -----------------------------------------------------
T ss_pred             --------CCCCHHHHHHHHHhCCCCcccCC-----cEEEEeccCCCCCCCCC
Confidence                    23356778888888 79999744     78999999999999986

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.5e-52  Score=441.26  Aligned_cols=333  Identities=20%  Similarity=0.243  Sum_probs=276.6

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHH-HHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLH-QIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      ...++|+++|+|||||||.||||++||+.+.. ..... ..++++++|++++.+|++|.+++.. .+.++..|+++++. 
T Consensus       202 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~  280 (570)
T 3c5e_A          202 ETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHL  280 (570)
T ss_dssp             CCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEEC
T ss_pred             CCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEec
Confidence            45789999999999999999999999994332 33333 6678899999999999999999874 56678889888764 


Q ss_pred             ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                          ++..+++.++++++|++.++|+++..+++..      ..                                     
T Consensus       281 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------~~-------------------------------------  317 (570)
T 3c5e_A          281 LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD------LS-------------------------------------  317 (570)
T ss_dssp             CSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC------TT-------------------------------------
T ss_pred             CCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc------cc-------------------------------------
Confidence                6889999999999999999999998775420      00                                     


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCcccee
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~  286 (495)
                                                       ...++.+|.+++||+++++++ +.+.+.+|+++++.||+||++..++
T Consensus       318 ---------------------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~  364 (570)
T 3c5e_A          318 ---------------------------------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM  364 (570)
T ss_dssp             ---------------------------------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEE
T ss_pred             ---------------------------------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhccccee
Confidence                                             012344589999999999987 5555668999999999999987665


Q ss_pred             ccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEc-----cCCcchhccCCchhhhhccCCCCccccCceee
Q 011011          287 ARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVR-----GSQVMQGYFKNPSATKQALDEDGWLNTGDIGW  361 (495)
Q Consensus       287 ~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~-----~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~  361 (495)
                      .........+++|+|+++++++|+|+ .++++|.|+.|||+|+     ||+++.||+++|+.|++.|. ++||+|||+|+
T Consensus       365 ~~~~~~~~~~~vG~p~~~~~v~i~d~-~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~  442 (570)
T 3c5e_A          365 VSKTMKIKPGYMGTAASCYDVQIIDD-KGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGI  442 (570)
T ss_dssp             CCTTSCCCTTCCCEECTTCCEEEECT-TSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEE
T ss_pred             cCcccccCCCcccccCCCceEEEECC-CCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEE
Confidence            54444456789999999999999995 5899999999999999     99999999999999999994 89999999999


Q ss_pred             eccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHH
Q 011011          362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLM  437 (495)
Q Consensus       362 ~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~  437 (495)
                      +++          +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.|+|++.++..  
T Consensus       443 ~d~----------dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~--  509 (570)
T 3c5e_A          443 KDE----------DGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL--  509 (570)
T ss_dssp             ECT----------TSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT--
T ss_pred             EcC----------CceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc--
Confidence            998          8999999999999997 9999999999999999999999999998643    4678888765310  


Q ss_pred             HHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          438 AAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                               ....+...++++++++++|+.|+     .+++|.++++.+.+.+||+
T Consensus       510 ---------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  551 (570)
T 3c5e_A          510 ---------SHDPEQLTKELQQHVKSVTAPYK-----YPRKIEFVLNLPKTVTGKI  551 (570)
T ss_dssp             ---------TSCHHHHHHHHHHHHHHHSCGGG-----SCSEEEEESCCCBCTTCCB
T ss_pred             ---------CcchHHHHHHHHHHHHhhCcccc-----CCcEEEEeccCCCCCCcCC
Confidence                     00011235678888888888887     4588999999999999997

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1e-52  Score=441.91  Aligned_cols=322  Identities=22%  Similarity=0.248  Sum_probs=271.1

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---  131 (495)
                      ...++|+++|+|||||||.||||++||+++.+....+...+++.++|++++++|++|.+++...+.++..|+++++.   
T Consensus       178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~  257 (563)
T 1amu_A          178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD  257 (563)
T ss_dssp             CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChH
Confidence            45689999999999999999999999999988888777788899999999999999999887777789999999874   


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++.++|+++..+..                                                
T Consensus       258 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~------------------------------------------------  289 (563)
T 1amu_A          258 TINDFVKFEQYINQKEITVITLPPTYVVHLDP------------------------------------------------  289 (563)
T ss_dssp             HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT------------------------------------------------
T ss_pred             hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh------------------------------------------------
Confidence               46788999999999999999998754421                                                


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceecc
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                       ..+..+|.+++||+++++++.+.+.. .+++++.||+||++..++..
T Consensus       290 ---------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~  335 (563)
T 1amu_A          290 ---------------------------------ERILSIQTLITAGSATSPSLVNKWKE-KVTYINAYGPTETTICATTW  335 (563)
T ss_dssp             ---------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT-TSEEEEEECCGGGSSCSEEE
T ss_pred             ---------------------------------cccccccEEEEEEecCCHHHHHHHHh-CCeEEEEECcCHHhHhheee
Confidence                                             11234589999999999987544433 37899999999998765543


Q ss_pred             CCC---CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC------CCccccCce
Q 011011          289 RPT---CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLNTGDI  359 (495)
Q Consensus       289 ~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~------~~~~~TGDl  359 (495)
                      ...   .....++|+|+++++++|+| ++++++|.|+.|||+|+||+++.|||++|+.|+++|..      ++||+|||+
T Consensus       336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDl  414 (563)
T 1amu_A          336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ  414 (563)
T ss_dssp             ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred             ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCE
Confidence            222   13456899999999999999 45889999999999999999999999999999999843      469999999


Q ss_pred             eeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHH
Q 011011          360 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEV  435 (495)
Q Consensus       360 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~  435 (495)
                      |++++          ||+++|+||+||+|++ +|++|+|.|||++|.+||.|.+|+|++.++    +.+.|+|++..   
T Consensus       415 g~~d~----------dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~---  480 (563)
T 1amu_A          415 ARWLS----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK---  480 (563)
T ss_dssp             EEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS---
T ss_pred             EEEcC----------CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC---
Confidence            99998          8999999999999998 999999999999999999999999998764    35778888652   


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          436 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                     ..+.++++++++++|+.|+.|     ++|.++++.+.+.+||+
T Consensus       481 ---------------~~~~~~l~~~l~~~L~~y~~P-----~~i~~v~~lP~t~~GKi  518 (563)
T 1amu_A          481 ---------------HIPLEQLRQFSSEELPTYMIP-----SYFIQLDKMPLTSNGKI  518 (563)
T ss_dssp             ---------------CCCHHHHHHHHHHHSCGGGSC-----SEEEECSSCCBCTTSSB
T ss_pred             ---------------CCCHHHHHHHHHhhCchhhCC-----cEEEEecccCCCCCcCh
Confidence                           346788999999999999744     88999999999999987

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.7e-52  Score=447.75  Aligned_cols=345  Identities=19%  Similarity=0.217  Sum_probs=279.2

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHH-HhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~  131 (495)
                      ..++++|+++|+|||||||.||||++||++++.... .+...+++.++|++++.+|++|+++..+ .+.++..|+++++.
T Consensus       257 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~  336 (663)
T 1ry2_A          257 TPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVF  336 (663)
T ss_dssp             CCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEE
T ss_pred             cccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEE
Confidence            345789999999999999999999999999876553 4555688999999999999999999854 56789999988874


Q ss_pred             -------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          132 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       132 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                             ++..+++.|+++++|+++++|+++..|.+.....      .                                
T Consensus       337 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~------~--------------------------------  378 (663)
T 1ry2_A          337 EGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY------I--------------------------------  378 (663)
T ss_dssp             CSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS------S--------------------------------
T ss_pred             CCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccc------c--------------------------------
Confidence                   4788999999999999999999987764421000      0                                


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHH-HHcC---CeeeeccCccc
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY-EAIG---VKVQVGYGLTE  280 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~-~~~g---~~v~~~YG~TE  280 (495)
                                                         -...++.+|.+++||+++++++.+++ +.+|   +++++.||+||
T Consensus       379 -----------------------------------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE  423 (663)
T 1ry2_A          379 -----------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE  423 (663)
T ss_dssp             -----------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred             -----------------------------------ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcc
Confidence                                               00134556999999999999985554 5677   89999999999


Q ss_pred             CccceeccCC---CCCCccccccCcCCcEEEEEeCCCCCcCCC-CCccEEEEcc--CCcchhccCCchhhhhccCC--CC
Q 011011          281 SSPVIAARRP---TCNVLGSVGHPINHTEIKIVDAETNEVLPA-GSKGIVKVRG--SQVMQGYFKNPSATKQALDE--DG  352 (495)
Q Consensus       281 ~~~~~~~~~~---~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~-g~~GEl~v~~--p~~~~gY~~~~~~t~~~~~~--~~  352 (495)
                      ++..++...+   ....++++|.|+++++++|+|++++++++. |+.|||+++|  |+++.|||+||+.|.+.|..  +|
T Consensus       424 ~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g  503 (663)
T 1ry2_A          424 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG  503 (663)
T ss_dssp             TCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT
T ss_pred             ccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC
Confidence            9876655433   235678999999999999999757889988 9999999999  58999999999999988753  78


Q ss_pred             ccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEE
Q 011011          353 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAII  428 (495)
Q Consensus       353 ~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~v  428 (495)
                      ||+|||+|++++          ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++    +.+.|+|
T Consensus       504 ~y~TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~V  572 (663)
T 1ry2_A          504 YYFTGDGAAKDK----------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFV  572 (663)
T ss_dssp             SEEEEEEEEECT----------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEE
T ss_pred             EEEcCCEEEEcC----------CCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEE
Confidence            999999999998          8999999999999998 899999999999999999999999999865    3588999


Q ss_pred             ecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          429 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       429 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      +++++......      .........++++++++++|+.|+     .+++|.++++.+.+.+||+
T Consensus       573 v~~~~~~~~~~------~~~~~~~l~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~T~sGKi  626 (663)
T 1ry2_A          573 VLKNKSSWSTA------TDDELQDIKKHLVFTVRKDIGPFA-----APKLIILVDDLPKTRSGKI  626 (663)
T ss_dssp             EEC------------------CCSHHHHHHHHHHHHTCTTT-----SCSEEEECSCCCBCTTSCB
T ss_pred             EEcCCCccccc------cchhHHHHHHHHHHHHHHhCCCCc-----CCeEEEEcCCCCCCCccCc
Confidence            98764210000      000000124778888888888887     4488999999999999997

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.8e-52  Score=435.93  Aligned_cols=335  Identities=22%  Similarity=0.241  Sum_probs=276.0

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      ....++|+++|+|||||||.||||++||+++.+........+++.++|++++++|++|.+++...+.++..|+++++.  
T Consensus       139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~  218 (512)
T 3fce_A          139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK  218 (512)
T ss_dssp             GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred             ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence            456789999999999999999999999999999888888888999999999999999999987778889999999874  


Q ss_pred             ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                          ++..+++.++++++|++.++|+++..++......                                          
T Consensus       219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------------------  256 (512)
T 3fce_A          219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFS------------------------------------------  256 (512)
T ss_dssp             HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCS------------------------------------------
T ss_pred             HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcccc------------------------------------------
Confidence                5778999999999999999999997764321000                                          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccce
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI  285 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~  285 (495)
                                                       ...++.+|.+++||+++++++ +.+.+.+ ++++++.||+||++..+
T Consensus       257 ---------------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  303 (512)
T 3fce_A          257 ---------------------------------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAV  303 (512)
T ss_dssp             ---------------------------------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCS
T ss_pred             ---------------------------------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhhe
Confidence                                             022345699999999999987 5566677 88999999999998766


Q ss_pred             eccCCCC-----CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhcc---CCCCccccC
Q 011011          286 AARRPTC-----NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTG  357 (495)
Q Consensus       286 ~~~~~~~-----~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~---~~~~~~~TG  357 (495)
                      +......     ....++|.|.++++++|+| ++++++|+|+.|||+|+||+++.|||++|+.|++.|   +.++||+||
T Consensus       304 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG  382 (512)
T 3fce_A          304 TGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG  382 (512)
T ss_dssp             EEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred             eeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC
Confidence            5433221     2456799999999999999 568999999999999999999999999999999998   346799999


Q ss_pred             ceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChH
Q 011011          358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKE  433 (495)
Q Consensus       358 Dl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~  433 (495)
                      |+|++ +          +|+++|.||+||+|++ +|++|+|.+||++|.+||.|.+|+|++.++    +.+.|+|+++.+
T Consensus       383 Dlg~~-~----------dG~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~  450 (512)
T 3fce_A          383 DAGYV-E----------NGLLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEH  450 (512)
T ss_dssp             EEEEE-E----------TTEEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSC
T ss_pred             ceEEe-c----------CCEEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCc
Confidence            99998 5          7999999999999998 999999999999999999999999998754    346788887642


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          434 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      .            ........++++++++++|+.|+     .+++|.++++.+.+.+||+
T Consensus       451 ~------------~~~~~~~~~~l~~~l~~~L~~~~-----~P~~~~~~~~lP~t~~GKi  493 (512)
T 3fce_A          451 S------------FEKEFKLTSAIKKELNERLPNYM-----IPRKFMYQSSIPMTPNGKV  493 (512)
T ss_dssp             C------------CSSHHHHHHHHHHHHHTTSCGGG-----SCSEEEECSCCCBCTTSSB
T ss_pred             c------------ccchhhhHHHHHHHHHhhCchhc-----CCeEEEEecccCCCCCcCh
Confidence            0            00000113567788888888886     4488999999999999997

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=5.3e-53  Score=445.32  Aligned_cols=329  Identities=22%  Similarity=0.265  Sum_probs=201.8

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      ....++|+++|+|||||||.||||++||+++.+.... ...+++.++|++++++|++|..+....+.++..|+++++.  
T Consensus       209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~  287 (570)
T 4gr5_A          209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG  287 (570)
T ss_dssp             CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred             CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence            3467899999999999999999999999998765544 4456788999999999999877766667788899988874  


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++.++|+++..+++...                                             
T Consensus       288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------------------------------------------  322 (570)
T 4gr5_A          288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---------------------------------------------  322 (570)
T ss_dssp             SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---------------------------------------------
T ss_pred             ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---------------------------------------------
Confidence               57899999999999999999999988764310                                             


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCcccee
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIA  286 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~  286 (495)
                                                       ..++.+|.+++||++++... +++.+.+ ++++++.||+||++.+.+
T Consensus       323 ---------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~  369 (570)
T 4gr5_A          323 ---------------------------------EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTT  369 (570)
T ss_dssp             ---------------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSE
T ss_pred             ---------------------------------hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeee
Confidence                                             22345699999999999765 6666666 789999999999987665


Q ss_pred             ccCCC----CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCC--------Ccc
Q 011011          287 ARRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED--------GWL  354 (495)
Q Consensus       287 ~~~~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~--------~~~  354 (495)
                      .....    .....++|+|+++++++|+| +.++++++|+.|||+|+||+++.|||++|+.|+++|..+        |||
T Consensus       370 ~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~  448 (570)
T 4gr5_A          370 HHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMY  448 (570)
T ss_dssp             EEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEE
T ss_pred             eeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEE
Confidence            43221    23345799999999999999 458999999999999999999999999999999998543        799


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEec
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  430 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~  430 (495)
                      +|||+|++++          +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.|+|++
T Consensus       449 ~TGDlg~~d~----------dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~  517 (570)
T 4gr5_A          449 RTGDLARRRA----------DGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVA  517 (570)
T ss_dssp             EEEEEEEECT----------TSCEEEEEC---------------------------------------------------
T ss_pred             eCCCeEEECC----------CCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEe
Confidence            9999999998          8999999999999998 9999999999999999999999999998653    56678876


Q ss_pred             ChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          431 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ...               ....+.++++++++++|+.|+.|     ++|.++++.+.+.+||+
T Consensus       518 ~~~---------------~~~~~~~~l~~~l~~~l~~~~~P-----~~i~~v~~lP~t~~GKi  560 (570)
T 4gr5_A          518 ERA---------------DAPPDAAELRRHVAEALPAYMVP-----VECVPVDELPRTPNGKL  560 (570)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cCC---------------CCCcCHHHHHHHHHhhCccccCC-----cEEEEcccCCCCCCcCc
Confidence            542               12346788999999999999844     78899999999999986

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=7e-52  Score=440.63  Aligned_cols=332  Identities=21%  Similarity=0.336  Sum_probs=282.7

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH--hHhHhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC--GYFIFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~--~~~~~~~G~~~~~~  131 (495)
                      ....++|++||+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++..  .+.++..|+++++.
T Consensus       179 ~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~  258 (617)
T 3rg2_A          179 TPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA  258 (617)
T ss_dssp             CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred             CCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence            3457899999999999999999999999999998888888889999999999999999999875  56678899999884


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++.++|+++..++.......                                          
T Consensus       259 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------------------------  296 (617)
T 3rg2_A          259 ADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE------------------------------------------  296 (617)
T ss_dssp             SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC------------------------------------------
T ss_pred             CCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc------------------------------------------
Confidence               57889999999999999999999988876432210                                          


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                     ....+..+|.+++||+++++++ +.+.+.++++++|.||+||++..++.
T Consensus       297 -------------------------------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~  345 (617)
T 3rg2_A          297 -------------------------------SRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTR  345 (617)
T ss_dssp             -------------------------------CTTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECC
T ss_pred             -------------------------------ccccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeeccc
Confidence                                           0013345699999999999987 55556789999999999998755443


Q ss_pred             cCCCC-CCccccccCc-CCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          288 RRPTC-NVLGSVGHPI-NHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       288 ~~~~~-~~~~~~G~p~-~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      ..... ....++|.|+ ++.+++|+| +.++++|.|+.|||+|+||++++||+++|+.|++.|..++||+|||+|++++ 
T Consensus       346 ~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~-  423 (617)
T 3rg2_A          346 LDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP-  423 (617)
T ss_dssp             TTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT-
T ss_pred             CCCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC-
Confidence            22111 2235789997 788999999 5689999999999999999999999999999999999999999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~  441 (495)
                               ||.++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.++    +.+.+++++..         
T Consensus       424 ---------dG~l~~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~---------  484 (617)
T 3rg2_A          424 ---------EGYITVQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE---------  484 (617)
T ss_dssp             ---------TSCEEEEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS---------
T ss_pred             ---------CceEEEEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC---------
Confidence                     8999999999999997 999999999999999999999999998754    35668888752         


Q ss_pred             cCCCcCCccccChHHHHHHHHH-HHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          442 LSIVHADASELSKEKTISLLYG-ELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                               ..+..++++++++ .|+.|+.|     +.|.++++.+.+.|||+
T Consensus       485 ---------~~~~~~l~~~l~~~~lp~~~vP-----~~~~~v~~lP~t~~GKi  523 (617)
T 3rg2_A          485 ---------PLRAVQVRRFLREQGIAEFKLP-----DRVECVDSLPLTAVGKV  523 (617)
T ss_dssp             ---------CCCHHHHHHHHHTTTCCGGGSC-----SEEEECSCCCBCTTSSB
T ss_pred             ---------CCCHHHHHHHHHhCCCccccCC-----cEEEEecccCCCCCCCC
Confidence                     3456788999988 68888744     88999999999999997

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=4.6e-52  Score=433.91  Aligned_cols=362  Identities=20%  Similarity=0.214  Sum_probs=280.2

Q ss_pred             CCcceEeHHHHHHhchhhhcccCCcchhhcccccCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcc--cCC
Q 011011           20 EEIPVFSYDEIIDLGRESRKAFSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI--VPA   97 (495)
Q Consensus        20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~--~~~   97 (495)
                      ..+..+.++++....... .+.         .+.....++|+++|+|||||||.||||++||+++.+........  ++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~  185 (521)
T 3l8c_A          116 EGISLVSLSEIESAKLAE-MPY---------ERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDV  185 (521)
T ss_dssp             TTSEEEEHHHHHHHHHHT-CCC---------CCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCC
T ss_pred             ccCcccchhhhhhccccc-CCc---------ccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCC
Confidence            345677777765433221 111         12345678999999999999999999999999998877665544  677


Q ss_pred             CCCcEEEEECChhhHHHHHHhHhHhhcCceEEec------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcch
Q 011011           98 ENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSA  171 (495)
Q Consensus        98 ~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  171 (495)
                      .+++++++..|++|.++....+.++..|+++++.      ++..+++.+.++++|++.++|+++..+......       
T Consensus       186 ~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------  258 (521)
T 3l8c_A          186 PKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF-------  258 (521)
T ss_dssp             CSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC-------
T ss_pred             CCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc-------
Confidence            8899999999999999887777788999998874      577899999999999999999998766432100       


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEE
Q 011011          172 ARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGV  251 (495)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  251 (495)
                                                                                          ....++.+|.++
T Consensus       259 --------------------------------------------------------------------~~~~~~~lr~~~  270 (521)
T 3l8c_A          259 --------------------------------------------------------------------CQAKMPALTHFY  270 (521)
T ss_dssp             --------------------------------------------------------------------STTTCTTCCEEE
T ss_pred             --------------------------------------------------------------------ccccCccceEEE
Confidence                                                                                002234568999


Q ss_pred             eccCCCChhH-HHHHHHc-CCeeeeccCcccCccceeccCCC-----CCCccccccCcCCcEEEEEeCCCCCcCCCCCcc
Q 011011          252 SGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAARRPT-----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKG  324 (495)
Q Consensus       252 ~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~G  324 (495)
                      +||++++++. +.+.+.+ ++++++.||+||++..++.....     ....+++|+|+++++++|+|+ +++++++|+.|
T Consensus       271 ~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~-~g~~~~~g~~G  349 (521)
T 3l8c_A          271 FDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDE-DGKELSSGEQG  349 (521)
T ss_dssp             ECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECT-TSCBCCTTCCE
T ss_pred             EecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECC-CcCCCCCCCce
Confidence            9999999887 5666777 89999999999998766543221     124467999999999999994 58999999999


Q ss_pred             EEEEccCCcchhccCCchhhhhcc---CCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHH
Q 011011          325 IVKVRGSQVMQGYFKNPSATKQAL---DEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLEL  401 (495)
Q Consensus       325 El~v~~p~~~~gY~~~~~~t~~~~---~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~I  401 (495)
                      ||+|+||+++.|||++|+.|++.|   +.++||+|||+|++++          +|+++|.||+||+|++ +|++|+|.+|
T Consensus       350 El~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~----------dG~l~~~GR~~d~i~~-~G~~v~p~eI  418 (521)
T 3l8c_A          350 EIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE----------DNILLYGGRLDFQIKY-AGYRIELEDV  418 (521)
T ss_dssp             EEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----------SSCEEEEEEGGGBCC------CBHHHH
T ss_pred             EEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----------CCeEEEeCcccceEeE-CCEEeCHHHH
Confidence            999999999999999999999998   5578999999999998          8999999999999998 8999999999


Q ss_pred             HHHHhcCcccceEEEEecCC-----CeeEEEEecChHHHHHHHHHcCCCcCCc-cccChHHHHHHHHHHHHhHhccCCCc
Q 011011          402 EEAALRSSLIRQIVVIGQDQ-----RRPGAIIVPDKEEVLMAAKRLSIVHADA-SELSKEKTISLLYGELRKWTSKCSFQ  475 (495)
Q Consensus       402 E~~l~~~p~V~~~~vvg~~~-----~~~~a~vv~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~  475 (495)
                      |++|.+||.|.+|+|++..+     +.+.|+|+++++..          .... .....++++++++++|+.|+.     
T Consensus       419 E~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~----------~~~~~~~~~~~~l~~~l~~~l~~~~~-----  483 (521)
T 3l8c_A          419 SQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVK----------ERFDRELELTKAIKASVKDHMMSYMM-----  483 (521)
T ss_dssp             HHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSG----------GGCSSHHHHHHHHHHHSGGGSCGGGS-----
T ss_pred             HHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccc----------cccccchhhHHHHHHHHHhhCccccC-----
Confidence            99999999999999998753     35778998875410          0000 001246778888888888874     


Q ss_pred             cccEEEecCCCCCCCCee
Q 011011          476 IGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       476 ~~~~~~~~~~~~~~~~~l  493 (495)
                      +++|.++++.+.+.+||+
T Consensus       484 P~~i~~v~~lP~t~~GKi  501 (521)
T 3l8c_A          484 PSKFLYRDSLPLTPNGKI  501 (521)
T ss_dssp             CSEEEECSSCCBCTTSSB
T ss_pred             CeEEEEecccCCCCCcCc
Confidence            488999999999999997

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=5e-52  Score=440.57  Aligned_cols=322  Identities=18%  Similarity=0.178  Sum_probs=266.5

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec---
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT---  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~---  131 (495)
                      ...++|++||+|||||||.||||+++|+++.+.+.. ...+++.++|++++++|++|.++....+.++..|+++++.   
T Consensus       160 ~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~  238 (620)
T 4dg8_A          160 CFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG  238 (620)
T ss_dssp             CCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred             CCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence            456899999999999999999999999999776554 4557789999999999999999988888889999998873   


Q ss_pred             --chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhH
Q 011011          132 --AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYL  209 (495)
Q Consensus       132 --~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  209 (495)
                        ++..+++.++++++|++..+|+++..+....                                               
T Consensus       239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-----------------------------------------------  271 (620)
T 4dg8_A          239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDLD-----------------------------------------------  271 (620)
T ss_dssp             SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-----------------------------------------------
T ss_pred             cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-----------------------------------------------
Confidence              5888999999999999999999998775420                                               


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccceec
Q 011011          210 VALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~~~  287 (495)
                                                     ...++.+|.+++||++++... +++.+.+ +++++|.||+||++..++.
T Consensus       272 -------------------------------~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~  320 (620)
T 4dg8_A          272 -------------------------------PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCC  320 (620)
T ss_dssp             -------------------------------GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEE
T ss_pred             -------------------------------hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEE
Confidence                                           022345699999999999664 6666665 8899999999999876654


Q ss_pred             cCCC----CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCC-------Ccccc
Q 011011          288 RRPT----CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDED-------GWLNT  356 (495)
Q Consensus       288 ~~~~----~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~-------~~~~T  356 (495)
                      ....    .....++|+|+++++++|+|+++..++|.|+.|||+|+||++++||+++|+.|++.|..+       +||+|
T Consensus       321 ~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrT  400 (620)
T 4dg8_A          321 HVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRT  400 (620)
T ss_dssp             EECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEE
T ss_pred             EeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeC
Confidence            3221    134568999999999999997755568999999999999999999999999999999653       79999


Q ss_pred             CceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCe---eEEEEecChH
Q 011011          357 GDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR---PGAIIVPDKE  433 (495)
Q Consensus       357 GDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~---~~a~vv~~~~  433 (495)
                      ||+|++++          ||+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++.   +.++++... 
T Consensus       401 GDl~~~~~----------dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~-  468 (620)
T 4dg8_A          401 GDRARYDE----------QGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKA-  468 (620)
T ss_dssp             EEEEEECT----------TSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECT-
T ss_pred             CCEEEECC----------CCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecCh-
Confidence            99999998          8999999999999998 99999999999999999999999999876543   333433321 


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          434 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                           +++++.++++|+.|+.|     +.|.++++.+.+.|||+
T Consensus       469 ---------------------~~~~~~l~~~Lp~y~~P-----~~~~~v~~lP~t~~GKi  502 (620)
T 4dg8_A          469 ---------------------DASPQALLRQLPTWQRP-----HACVRVEALPLTAHGKL  502 (620)
T ss_dssp             ---------------------TCCCHHHHHHSCGGGSC-----SEEEECSSCCCC----C
T ss_pred             ---------------------HHHHHHHHHhChhhcCC-----cEEEEECcCCCCcccCH
Confidence                                 22345677889999854     88999999999999996

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.2e-52  Score=436.85  Aligned_cols=326  Identities=24%  Similarity=0.340  Sum_probs=202.0

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhH-hhcCceEEe--
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFI-FSRGIELMY--  130 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~-~~~G~~~~~--  130 (495)
                      ....++|+++|+|||||||.||||++||+++.+....+...+++.++|++++++|++|.+++...+.. +..|..++.  
T Consensus       155 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~  234 (509)
T 3ivr_A          155 PEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAK  234 (509)
T ss_dssp             CCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             CCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEecc
Confidence            45678999999999999999999999999999988888888899999999999999999999877665 455555554  


Q ss_pred             cchHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          131 TAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       131 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                      .++..+++.++++++|++.++|+++..++....                                               
T Consensus       235 ~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----------------------------------------------  267 (509)
T 3ivr_A          235 FDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-----------------------------------------------  267 (509)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC-----------------------------------------------
T ss_pred             cCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc-----------------------------------------------
Confidence            378999999999999999999999988866420                                               


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHc-CCeeeeccCcccCccceeccC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAI-GVKVQVGYGLTESSPVIAARR  289 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~  289 (495)
                                                    ...+..+|.+..+|++  ...+.+.+.+ ++++++.||+||++.+++...
T Consensus       268 ------------------------------~~~l~~lr~~~~~g~~--~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~  315 (509)
T 3ivr_A          268 ------------------------------PAQLASLRAVTGLDTP--ETIERFEATCPNATFWATFGQSETSGLSTFAP  315 (509)
T ss_dssp             ------------------------------GGGGTTCCEEEEECCH--HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEE
T ss_pred             ------------------------------ccchhhhheecccCCh--HHHHHHHHhcCCCeEEcccCccccccccccCc
Confidence                                          0223445888888887  4456677777 899999999999987766543


Q ss_pred             CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCC
Q 011011          290 PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRG  369 (495)
Q Consensus       290 ~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~  369 (495)
                      .. ....++|+|+++++++|+|++ ++++|+|+.|||+|+||+++.||+++|+.|++.|. +|||+|||+|++++     
T Consensus       316 ~~-~~~~~~G~p~~~~~~~i~d~~-~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~g~~~TGDl~~~~~-----  387 (509)
T 3ivr_A          316 YR-DRPKSAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFDA-----  387 (509)
T ss_dssp             GG-GSTTSCCEECTTCEEEEECTT-SCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG-GGSEEEEEEEEECT-----
T ss_pred             cc-cCCCcccccCCCcEEEEECCC-CCCCCCCCceEEEEecCCccccccCCHHHhHHHhh-cCCcccccEEEECC-----
Confidence            32 223459999999999999965 89999999999999999999999999999999995 89999999999998     


Q ss_pred             CccccCCeEEEEccc--cceEEeCCceeecchHHHHHHhcCcccceEEEEecCCCe----eEEEEecChHHHHHHHHHcC
Q 011011          370 RSRRCGGVLVLEGRA--KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR----PGAIIVPDKEEVLMAAKRLS  443 (495)
Q Consensus       370 ~~~~~~G~l~i~GR~--~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~~----~~a~vv~~~~~~~~~~~~~~  443 (495)
                           +|+++|+||+  ||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++.    +.++|++.++          
T Consensus       388 -----dG~l~~~GR~d~~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~----------  451 (509)
T 3ivr_A          388 -----DGYLFYAGRAPEKELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG----------  451 (509)
T ss_dssp             -----TSCEEEEEEC-----------------------------------------------------------------
T ss_pred             -----CceEEEeCCCCcceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCC----------
Confidence                 8999999999  999997 99999999999999999999999999987654    5677776643          


Q ss_pred             CCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          444 IVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       444 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                            ...+.++++++++++|+.|+.|     ++|.++++.+.+.|||+
T Consensus       452 ------~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi  490 (509)
T 3ivr_A          452 ------ESIAADALAEFVASLIARYKKP-----KHVVFVEALPKDAKGAI  490 (509)
T ss_dssp             --------------------------------------------------
T ss_pred             ------CCCCHHHHHHHHHhhCcccCCC-----cEEEEecCCCCCCCCCc
Confidence                  3456788999999999999744     78999999999999986

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=4.4e-52  Score=434.78  Aligned_cols=333  Identities=25%  Similarity=0.374  Sum_probs=268.2

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHH-HHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec-
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNL-LHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT-  131 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~-  131 (495)
                      ..+++|+++|+|||||||.||||++||+++ ..........+++.++|++++++|++|.+++.. .+.++..|+++++. 
T Consensus       179 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~  258 (529)
T 2v7b_A          179 ATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMA  258 (529)
T ss_dssp             CCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCC
T ss_pred             CCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEec
Confidence            457899999999999999999999999999 555555556678899999999999999999876 45678899998864 


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..+++.++++++|++.++|+++..++.....     .                                      
T Consensus       259 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~--------------------------------------  295 (529)
T 2v7b_A          259 ERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL-----P--------------------------------------  295 (529)
T ss_dssp             SCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC-----C--------------------------------------
T ss_pred             CCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc-----c--------------------------------------
Confidence               688999999999999999999998777542100     0                                      


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                    .  .....+|.+++||+++++++ +.+.+.+|+++++.||+||++.+...
T Consensus       296 ------------------------------~--~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~  343 (529)
T 2v7b_A          296 ------------------------------A--RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLS  343 (529)
T ss_dssp             ------------------------------C--GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEE
T ss_pred             ------------------------------c--ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeec
Confidence                                          0  00113589999999999987 45555689999999999999766655


Q ss_pred             cCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCC
Q 011011          288 RRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHS  367 (495)
Q Consensus       288 ~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~  367 (495)
                      ........+++|+|+++++++|+| ++++++|+|+.|||+|+||+++.||+++++.|++.|. ++||+|||+|++++   
T Consensus       344 ~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~-~~~~~TGDl~~~~~---  418 (529)
T 2v7b_A          344 NRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYCRLP---  418 (529)
T ss_dssp             CCTTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE-TTEEEEEEEEEECT---
T ss_pred             cccCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhh-cCCcccCceEEECC---
Confidence            544445678899999999999999 5589999999999999999999999999999999995 89999999999998   


Q ss_pred             CCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC---CCeeEEEEecChHHHHHHHHHcCC
Q 011011          368 RGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD---QRRPGAIIVPDKEEVLMAAKRLSI  444 (495)
Q Consensus       368 ~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~---~~~~~a~vv~~~~~~~~~~~~~~~  444 (495)
                             +|+++|.||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+   ...+.|+|++..+.          
T Consensus       419 -------~G~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~----------  480 (529)
T 2v7b_A          419 -------NGCYVYAGRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF----------  480 (529)
T ss_dssp             -------TSCEEEEEEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC----------
T ss_pred             -------CccEEEeCccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC----------
Confidence                   8999999999999998 89999999999999999999999999973   23567888876430          


Q ss_pred             CcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          445 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                         ...+...++++++++++|+.|+     .+++|.++++.+.+.+||+
T Consensus       481 ---~~~~~~~~~l~~~l~~~L~~~~-----~P~~i~~v~~lP~t~~GKi  521 (529)
T 2v7b_A          481 ---APSEILAEELKAFVKDRLAPHK-----YPRDIVFVDDLPKTATGKI  521 (529)
T ss_dssp             ---CCCHHHHHHHHHHHHTTSCTTT-----SCSEEEEESCCCBCTTSCB
T ss_pred             ---CcchhHHHHHHHHHHhhcchhh-----CCeEEEEeccCCCCCccch
Confidence               0011123567788887777776     5589999999999999997

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=8.2e-52  Score=429.90  Aligned_cols=320  Identities=24%  Similarity=0.318  Sum_probs=270.7

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      ...+++|+++|+|||||||.||||++||+++.+....+...+++.++|++++++|++|.+++...+.++..|+++++.  
T Consensus       158 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~  237 (501)
T 3ipl_A          158 TSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK  237 (501)
T ss_dssp             CCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSS
T ss_pred             cCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCCC
Confidence            356789999999999999999999999999999888888888999999999999999999998878889999999885  


Q ss_pred             -chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHH
Q 011011          132 -AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLV  210 (495)
Q Consensus       132 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  210 (495)
                       ++..+++.++++++|++.++|+++..|+.....                                              
T Consensus       238 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------------------------  271 (501)
T 3ipl_A          238 FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------------------------  271 (501)
T ss_dssp             CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------------------------
T ss_pred             CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------------------------
Confidence             689999999999999999999999887653100                                              


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCC
Q 011011          211 ALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRP  290 (495)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~  290 (495)
                                                      ....+|.+++||+++++++.+.+..+++++++.||+||++..+.....
T Consensus       272 --------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~  319 (501)
T 3ipl_A          272 --------------------------------EPYNLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTATP  319 (501)
T ss_dssp             --------------------------------SCTTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEEGGGTEEEEEECH
T ss_pred             --------------------------------CcCcccEEEEeCCCCCHHHHHHHHHhCCCEeccccccccccceeecCc
Confidence                                            000348999999999999866666689999999999999875544332


Q ss_pred             C--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCC
Q 011011          291 T--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSR  368 (495)
Q Consensus       291 ~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~  368 (495)
                      .  ....+++|.|+++++++|+|++      +|+.|||+|+|+.+++||+++++.|+. | .+|||+|||+|++++    
T Consensus       320 ~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~----  387 (501)
T 3ipl_A          320 EMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDH----  387 (501)
T ss_dssp             HHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECT----
T ss_pred             cccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcC----
Confidence            2  2356789999999999999965      466899999999999999999999987 5 589999999999998    


Q ss_pred             CCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHHHcCC
Q 011011          369 GRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAKRLSI  444 (495)
Q Consensus       369 ~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~~~~~  444 (495)
                            +|+++|.||+||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++    .+.+++++.             
T Consensus       388 ------~G~l~~~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~-------------  447 (501)
T 3ipl_A          388 ------EGYVMIYDRRKDLIIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE-------------  447 (501)
T ss_dssp             ------TSCEEEEEECCCCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES-------------
T ss_pred             ------CCeEEEEccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC-------------
Confidence                  8999999999999996 9999999999999999999999999998654    355777754             


Q ss_pred             CcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          445 VHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                           ...+.++++++++++|+.|+.|     ++|.++++.+.+.|||+
T Consensus       448 -----~~~~~~~l~~~l~~~L~~~~~P-----~~i~~v~~lP~t~~GKi  486 (501)
T 3ipl_A          448 -----SDISKAQLIAYLSKHLAKYKVP-----KHFEKVDTLPYTSTGKL  486 (501)
T ss_dssp             -----SCCCHHHHHHHHHHHSCGGGSC-----SEEEECSSCC-------
T ss_pred             -----CCCCHHHHHHHHHhhCccccCC-----CEEEEecccCCCCCCCE
Confidence                 3456789999999999999854     78999999999999996

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=4.2e-52  Score=464.49  Aligned_cols=334  Identities=29%  Similarity=0.459  Sum_probs=212.7

Q ss_pred             cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc----ccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCce
Q 011011           53 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD----IVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIE  127 (495)
Q Consensus        53 ~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~  127 (495)
                      .....++|+++|+|||||||.||||++||+++...+.....    .+++.++|++++++|++|.+++.. .+.++..|++
T Consensus       219 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~  298 (979)
T 3tsy_A          219 SVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAA  298 (979)
T ss_dssp             CSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCE
T ss_pred             cCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcE
Confidence            34568999999999999999999999999999887665433    456788999999999999999866 4566889999


Q ss_pred             EEec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          128 LMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       128 ~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                      +++.   ++..+++.++++++|++.++|+++..++......                                       
T Consensus       299 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------------------  339 (979)
T 3tsy_A          299 ILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETE---------------------------------------  339 (979)
T ss_dssp             EEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGG---------------------------------------
T ss_pred             EEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcccc---------------------------------------
Confidence            8885   5889999999999999999999998776531100                                       


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHc-CCeeeeccCcccCc
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI-GVKVQVGYGLTESS  282 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~-g~~v~~~YG~TE~~  282 (495)
                                                          ...++.+|.+++||+++++++. .+.+.+ ++++++.||+||++
T Consensus       340 ------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~  383 (979)
T 3tsy_A          340 ------------------------------------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG  383 (979)
T ss_dssp             ------------------------------------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGC
T ss_pred             ------------------------------------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhh
Confidence                                                0123456999999999999874 455567 89999999999998


Q ss_pred             cceeccC-----CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccC
Q 011011          283 PVIAARR-----PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTG  357 (495)
Q Consensus       283 ~~~~~~~-----~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TG  357 (495)
                      .+++...     +.....+++|+|+++++++|+|+++++++|+|+.|||+|+||++++|||++|+.|++.|+.+|||+||
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TG  463 (979)
T 3tsy_A          384 PVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTG  463 (979)
T ss_dssp             SEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE
T ss_pred             HHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcC
Confidence            7665431     22345678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChH
Q 011011          358 DIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKE  433 (495)
Q Consensus       358 Dl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~  433 (495)
                      |+|++++          +|+++|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+++    .+.|+|++.++
T Consensus       464 Dl~~~~~----------dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~  532 (979)
T 3tsy_A          464 DIGLIDD----------DDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKD  532 (979)
T ss_dssp             EEEEECT----------TSCEEEEEESCC---------------------------------------------------
T ss_pred             CEEEEcC----------CceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCC
Confidence            9999998          8999999999999998 8999999999999999999999999997654    46678877543


Q ss_pred             HHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          434 EVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                      ...+.++++++++++|+.|+.     +++|.++++.+.+.|||+
T Consensus       533 ----------------~~~~~~~l~~~l~~~l~~~~~-----p~~i~~v~~lP~t~~GKi  571 (979)
T 3tsy_A          533 ----------------SELSEDDVKQFVSKQVVFYKR-----INKVFFTESIPKAPSGKI  571 (979)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ----------------CCCCHHHHHHHHHHhcccccC-----CeEEEEeCCcCcCCCCCe
Confidence                            345678899999999999974     478999999999999986

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=4.9e-49  Score=450.54  Aligned_cols=326  Identities=22%  Similarity=0.269  Sum_probs=278.7

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec--
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT--  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~--  131 (495)
                      ....++|++||+|||||||.||||+++|+++.+. ......+++.++|+++++.|+.|..+....+.++..|+++++.  
T Consensus       602 ~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~  680 (1304)
T 2vsq_A          602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE  680 (1304)
T ss_dssp             CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred             CCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence            3467899999999999999999999999999865 4455667888999999999999988877778889999999885  


Q ss_pred             ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                          ++..+.+.++++++|++..+|+++..+.....                                            
T Consensus       681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~--------------------------------------------  716 (1304)
T 2vsq_A          681 HTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE--------------------------------------------  716 (1304)
T ss_dssp             GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS--------------------------------------------
T ss_pred             hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch--------------------------------------------
Confidence                46789999999999999999999987754200                                            


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc-CCeeeeccCcccCccce
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI-GVKVQVGYGLTESSPVI  285 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~-g~~v~~~YG~TE~~~~~  285 (495)
                                                        ..+..+|.+++||++++... +++.+.+ +.+++|.||+||++..+
T Consensus       717 ----------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  762 (1304)
T 2vsq_A          717 ----------------------------------DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFA  762 (1304)
T ss_dssp             ----------------------------------HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCS
T ss_pred             ----------------------------------hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHh
Confidence                                              01123489999999999775 6666666 47899999999998766


Q ss_pred             eccCC----CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCC------CCccc
Q 011011          286 AARRP----TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDE------DGWLN  355 (495)
Q Consensus       286 ~~~~~----~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~------~~~~~  355 (495)
                      +....    ......++|+|+++++++|+|+ .++++|.|+.|||+|+|+++++||+|+|++|+++|..      ++||+
T Consensus       763 ~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yr  841 (1304)
T 2vsq_A          763 TAHVVHDLPDSISSLPIGKPISNASVYILNE-QSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYR  841 (1304)
T ss_dssp             EEEECCCCCSSCSSCCCBEECTTEEEEEECT-TSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEE
T ss_pred             eeeeccCccccCCCCCCceeeCCCEEEEECC-CcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEe
Confidence            54332    1234467999999999999995 5899999999999999999999999999999999842      45999


Q ss_pred             cCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecC
Q 011011          356 TGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPD  431 (495)
Q Consensus       356 TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~  431 (495)
                      |||+|++++          ||.++|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++    ..+.|+|++.
T Consensus       842 TGDl~~~~~----------dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~  910 (1304)
T 2vsq_A          842 TGDLARWLP----------DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNR  910 (1304)
T ss_dssp             EEEEEEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECS
T ss_pred             cCCeEEEcC----------CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCC
Confidence            999999999          8999999999999998 999999999999999999999999998653    4688999875


Q ss_pred             hHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          432 KEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      .                  ..+.+++++++++.|+.|+.|     +.|.++++.+.+.|||+
T Consensus       911 ~------------------~~~~~~l~~~l~~~Lp~ymvP-----~~~~~l~~lP~t~~GKi  949 (1304)
T 2vsq_A          911 T------------------QLSAEDVKAHLKKQLPAYMVP-----QTFTFLDELPLTTNGKV  949 (1304)
T ss_dssp             S------------------SSCHHHHHHHHHHHSCGGGSC-----SEEEEESCCCCCSSCSS
T ss_pred             C------------------CCCHHHHHHHHHHhChHhhhc-----cEEEEecccCCCCCccc
Confidence            2                  346788999999999999855     78999999999999997

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=7.9e-50  Score=423.38  Aligned_cols=337  Identities=21%  Similarity=0.316  Sum_probs=272.9

Q ss_pred             cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011           53 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  131 (495)
Q Consensus        53 ~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~  131 (495)
                      ....+++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++.. .+.++..|+++++.
T Consensus       161 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~  240 (590)
T 3kxw_A          161 PTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM  240 (590)
T ss_dssp             CCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred             CCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence            34567899999999999999999999999999999888888889999999999999999999887 56678999998874


Q ss_pred             -------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          132 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       132 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                             ++..+++.++++++|++.++|+++..+.+.+.....                                     
T Consensus       241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~-------------------------------------  283 (590)
T 3kxw_A          241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK-------------------------------------  283 (590)
T ss_dssp             CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG-------------------------------------
T ss_pred             CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc-------------------------------------
Confidence                   477889999999999999999998877654211100                                     


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHc------CCeeeeccC
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAI------GVKVQVGYG  277 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~------g~~v~~~YG  277 (495)
                                                         -...++.+|.+++||+++++++ +.+.+.+      +.++++.||
T Consensus       284 -----------------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG  328 (590)
T 3kxw_A          284 -----------------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYG  328 (590)
T ss_dssp             -----------------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEE
T ss_pred             -----------------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccc
Confidence                                               0023455699999999999987 5555565      247999999


Q ss_pred             cccCccceeccCC---------------------------CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc
Q 011011          278 LTESSPVIAARRP---------------------------TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG  330 (495)
Q Consensus       278 ~TE~~~~~~~~~~---------------------------~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~  330 (495)
                      +||++.+++....                           .....+++|.|+++  ++|+|+++++++++|+.|||+|+|
T Consensus       329 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g  406 (590)
T 3kxw_A          329 LAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQS  406 (590)
T ss_dssp             CGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEES
T ss_pred             cccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeC
Confidence            9999887664322                           11234678999988  889998889999999999999999


Q ss_pred             CCcchhccCCchhhhhccCC------CC--ccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHH
Q 011011          331 SQVMQGYFKNPSATKQALDE------DG--WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELE  402 (495)
Q Consensus       331 p~~~~gY~~~~~~t~~~~~~------~~--~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE  402 (495)
                      |+++.|||++|+.|+++|..      +|  ||+|||+|++++           |+++|+||+||+||+ +|++|+|.|||
T Consensus       407 ~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~dd-----------G~l~~~GR~dd~Ik~-~G~~v~p~eIE  474 (590)
T 3kxw_A          407 NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE-----------NELYVTGRIKDLIII-YGKNHYPQDIE  474 (590)
T ss_dssp             TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEET-----------TEEEEEEESSCHHHH-HHHTTHHHHHH
T ss_pred             CcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEEC-----------CEEEEEcCccceEEE-CCEecCHHHHH
Confidence            99999999999999999964      24  999999999884           999999999999998 99999999999


Q ss_pred             HHH-hcCcccc--eEEEEecCC---CeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHh-HhccCCCc
Q 011011          403 EAA-LRSSLIR--QIVVIGQDQ---RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRK-WTSKCSFQ  475 (495)
Q Consensus       403 ~~l-~~~p~V~--~~~vvg~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~  475 (495)
                      ++| ..||.|.  +|+|++.++   ..+.+++++..+.              ....+.+++.+++++.|.+ ++.+.   
T Consensus       475 ~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~--------------~~~~~~~~l~~~l~~~l~~~~~~p~---  537 (590)
T 3kxw_A          475 FSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRF--------------MDDVAQDNLFNEIFELVYENHQLEV---  537 (590)
T ss_dssp             HHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTT--------------CCHHHHHHHHHHHHHHHHHHHSCCC---
T ss_pred             HHHHhcCccccCccEEEEEecCCCCceEEEEEEecccc--------------ccchhHHHHHHHHHHHHHHHcCCce---
Confidence            999 7899998  799888653   3466777765420              0234567899999999986 54331   


Q ss_pred             cccEEEe--cCCCCCCCCee
Q 011011          476 IGPIHVV--DEPFTVNFLCL  493 (495)
Q Consensus       476 ~~~~~~~--~~~~~~~~~~l  493 (495)
                       ..+.++  ++.+.+.+||+
T Consensus       538 -~~i~~v~~~~lP~t~sGKi  556 (590)
T 3kxw_A          538 -HTIVLIPLKAMPHTTSGKI  556 (590)
T ss_dssp             -CEEEEEETTCSCCCSCHHH
T ss_pred             -eEEEEECCCccCcCCCcHH
Confidence             245555  68888999986

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=3.9e-49  Score=415.47  Aligned_cols=339  Identities=17%  Similarity=0.151  Sum_probs=196.7

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhc--------ccCCCCCcEEEEECChhhHHHHHHhHhHhhcCc
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYD--------IVPAENGDKFLSMLPPWHVYERACGYFIFSRGI  126 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~  126 (495)
                      ...++++++|+|||||||.||||++||+++.+....+..        .+.+...+++++..|+.|.++....+.++..|+
T Consensus       171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  250 (562)
T 3ite_A          171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL  250 (562)
T ss_dssp             CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred             CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence            456789999999999999999999999999876655432        244678899999999999888777777888999


Q ss_pred             eEEecc----hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccC
Q 011011          127 ELMYTA----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRN  202 (495)
Q Consensus       127 ~~~~~~----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (495)
                      ++++..    +..+.+.++++++|++.++|+++..+...                                         
T Consensus       251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-----------------------------------------  289 (562)
T 3ite_A          251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-----------------------------------------  289 (562)
T ss_dssp             EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-----------------------------------------
T ss_pred             EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-----------------------------------------
Confidence            988753    46788999999999999999976543110                                         


Q ss_pred             CCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHH-HcCCeeeeccCcccC
Q 011011          203 QKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYE-AIGVKVQVGYGLTES  281 (495)
Q Consensus       203 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~-~~g~~v~~~YG~TE~  281 (495)
                                                            ...++.+|.+++||+++++++.+.++ .+++++++.||+||+
T Consensus       290 --------------------------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~  331 (562)
T 3ite_A          290 --------------------------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEV  331 (562)
T ss_dssp             --------------------------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGG
T ss_pred             --------------------------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchh
Confidence                                                  02234569999999999999855554 468999999999998


Q ss_pred             ccceeccC-CCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCC--ccccCc
Q 011011          282 SPVIAARR-PTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDG--WLNTGD  358 (495)
Q Consensus       282 ~~~~~~~~-~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~--~~~TGD  358 (495)
                      +..++... ......+++|+|+++++++|+|+++++++|+|+.|||+|+||+++.|||++|+.|+..+. +|  ||+|||
T Consensus       332 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~~w~~TGD  410 (562)
T 3ite_A          332 TIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDI-NGRKMYRTGD  410 (562)
T ss_dssp             CSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEE-TTEEEEEEEE
T ss_pred             eeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccC-CCCEEEecCC
Confidence            87655433 233456789999999999999998899999999999999999999999999999987763 44  999999


Q ss_pred             eeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcC-cccceEEEEecCCCe-----eEEEEecCh
Q 011011          359 IGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRS-SLIRQIVVIGQDQRR-----PGAIIVPDK  432 (495)
Q Consensus       359 l~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~-p~V~~~~vvg~~~~~-----~~a~vv~~~  432 (495)
                      +|++++          +|+++|+||+||+||+ +|++|+|.|||++|.+| |.+.+++|++.+++.     +.++++...
T Consensus       411 lg~~d~----------dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~  479 (562)
T 3ite_A          411 IVRMDA----------DSSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSG  479 (562)
T ss_dssp             EEEECT----------TSCEEEEEEC------------------------------------------------------
T ss_pred             EEEEcC----------CCeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEeccc
Confidence            999998          8999999999999998 99999999999999997 888899988876543     223333222


Q ss_pred             HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCC-CCCee
Q 011011          433 EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTV-NFLCL  493 (495)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l  493 (495)
                      ........    ..........++|+++++++|+.|+.|     ++|.++++.+.. .+||+
T Consensus       480 ~~~~~~~~----~~~~~~~~~~~~l~~~~~~~L~~y~~P-----~~i~~v~~lP~t~~~GKi  532 (562)
T 3ite_A          480 AAVRGELR----WINENYKEINNSLRQACEQTLPAYMVP-----DFIIPISFIPLRDTSAKT  532 (562)
T ss_dssp             --------------------------------------------------------------
T ss_pred             cccccccc----ccccchhhHHHHHHHHHHhhCCcccCC-----cEEEEeccCCCCCCCCcc
Confidence            21110000    000111223568999999999999854     789999999965 88886

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=3.3e-48  Score=384.30  Aligned_cols=299  Identities=14%  Similarity=0.119  Sum_probs=248.1

Q ss_pred             CCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec-chHhH
Q 011011           58 SDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT-AVRNL  136 (495)
Q Consensus        58 ~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~-~~~~~  136 (495)
                      .||++||+|||||||.||||++||+++.+.+..+...++++++|++++++|++|++++...+.++..|+++++. +....
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~  115 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP  115 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH
Confidence            47899999999999999999999999999888888889999999999999999999998888888888888775 33455


Q ss_pred             HHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHH
Q 011011          137 KDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWL  216 (495)
Q Consensus       137 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  216 (495)
                      ++.++++++|++.++|+++..+++....                                                    
T Consensus       116 ~~~i~~~~~t~~~~~P~~l~~ll~~~~~----------------------------------------------------  143 (358)
T 4gs5_A          116 LAGLDHADFDFVAMVPMQLQSILENSAT----------------------------------------------------  143 (358)
T ss_dssp             TTTCSSCCCSEEEECHHHHHHHHHCTTT----------------------------------------------------
T ss_pred             HHHHHHhCCeEEEcChHHHHHhhccccc----------------------------------------------------
Confidence            6788999999999999999887653110                                                    


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceeccCCCCCCcc
Q 011011          217 WARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLG  296 (495)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~  296 (495)
                                              ...+..+|.+++||+++++++.+.++.+++++++.||+||++..++.........+
T Consensus       144 ------------------------~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~~~~~~g  199 (358)
T 4gs5_A          144 ------------------------SGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKALNGPEAS  199 (358)
T ss_dssp             ------------------------GGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEECSSTTCC
T ss_pred             ------------------------cccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccccccccc
Confidence                                    01233458999999999999877777789999999999999988877766666778


Q ss_pred             ccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCC
Q 011011          297 SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGG  376 (495)
Q Consensus       297 ~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G  376 (495)
                      .+|.+.|++.+.+.+           .|||+++|+..                .+|||+|||+|++++          +|
T Consensus       200 ~~~~~~pgv~~~~~~-----------~Gel~~~g~~~----------------~~g~~~TGDlg~~d~----------~g  242 (358)
T 4gs5_A          200 ELYVFLPGIQYGVDE-----------RGCLHISGAVT----------------NGQTVQTNDLVEIHG----------NA  242 (358)
T ss_dssp             SCEEECTTCEEEECT-----------TSEEEEESGGG----------------TTCCEEEEEEEEECS----------SE
T ss_pred             eeeccCCCeEEEecC-----------cCceEEecccc----------------cCcceecCCcccccc----------Cc
Confidence            899999998887633           58999986532                478999999999998          67


Q ss_pred             eEEEEccccceEEeCCceeecchHHHHHH---hcCcccceEEEE-ecCCC----eeEEEEecChHHHHHHHHHcCCCcCC
Q 011011          377 VLVLEGRAKDTIVLSTGENVEPLELEEAA---LRSSLIRQIVVI-GQDQR----RPGAIIVPDKEEVLMAAKRLSIVHAD  448 (495)
Q Consensus       377 ~l~i~GR~~d~i~~~~G~~v~~~~IE~~l---~~~p~V~~~~vv-g~~~~----~~~a~vv~~~~~~~~~~~~~~~~~~~  448 (495)
                       +.++||+||+||+ +|++|+|.|||++|   .+||.|.+|+|+ +.+++    .+.|+|+....               
T Consensus       243 -~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~---------------  305 (358)
T 4gs5_A          243 -FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP---------------  305 (358)
T ss_dssp             -EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC---------------
T ss_pred             -eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC---------------
Confidence             6678999999997 89999999999877   468999999887 44443    45677665532               


Q ss_pred             ccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          449 ASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       449 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                        +...++++++++++|+.|+.     +++|.++++.+.+.+||+
T Consensus       306 --~~~~~~l~~~l~~~L~~~~~-----P~~i~~v~~lP~t~~GKi  343 (358)
T 4gs5_A          306 --EALTERLTAEIRSRVSTYEN-----PKHIYFAKAFAKTQTDKI  343 (358)
T ss_dssp             --HHHHHHHHHHHHHHSCGGGS-----CSCEEEESSCCBCTTSCB
T ss_pred             --CcCHHHHHHHHHhhCCCCCC-----ceEEEEECCcCCCCCCCh
Confidence              23457899999999999974     488999999999999997

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=5.3e-47  Score=386.76  Aligned_cols=346  Identities=16%  Similarity=0.125  Sum_probs=259.5

Q ss_pred             hcccCCcchhhcccc--cCCCCC-CCEEEEEeCCCCCCCchhhhhchHHHHHHHHHh---hcccCCCCCcEEEEECChhh
Q 011011           38 RKAFSDSNDARKHYK--YETIGS-DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENGDKFLSMLPPWH  111 (495)
Q Consensus        38 ~~~~~~~~~~~~~~~--~~~~~~-~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~p~~h  111 (495)
                      ..|+.++.+.+++++  ...+++ +|+++++|||||||.||+|++||+++.+....+   ...+++.++|++++++|+.|
T Consensus        62 ~lP~~~~~~l~~~~p~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  141 (436)
T 3qov_A           62 KIPFTTKSDMRANYPFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGM  141 (436)
T ss_dssp             GSCCBCHHHHHHTTTTTTCCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTT
T ss_pred             HCCCCCHHHHHhcCCCccccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECccccc
Confidence            344444444443322  234566 899999999999999999999999997765554   33457899999999999865


Q ss_pred             HHHHH-HhHhHhhcCceEEec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHH
Q 011011          112 VYERA-CGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  187 (495)
Q Consensus       112 ~~~~~-~~~~~~~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (495)
                      ..+.. ..+.++..|+++++.   ++..+++.++++++|++.++|+++..|++........                   
T Consensus       142 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------  202 (436)
T 3qov_A          142 FTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGID-------------------  202 (436)
T ss_dssp             CHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCC-------------------
T ss_pred             chhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence            55544 456678899998874   5789999999999999999999999887754332100                   


Q ss_pred             HHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHH
Q 011011          188 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYE  266 (495)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~  266 (495)
                                                                            ..+..+|.+++||+++++++. .+.+
T Consensus       203 ------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~  228 (436)
T 3qov_A          203 ------------------------------------------------------PRETTLKTLVIGAEPHTDEQRRKIER  228 (436)
T ss_dssp             ------------------------------------------------------TTSSSCCEEEEESSCCCHHHHHHHHH
T ss_pred             ------------------------------------------------------cccCCccEEEEeCCcCCHHHHHHHHH
Confidence                                                                  113456999999999999874 4555


Q ss_pred             HcCCeeeeccCcccCccc-eeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhh
Q 011011          267 AIGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK  345 (495)
Q Consensus       267 ~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~  345 (495)
                      .+|+++++.||+||+++. +.....   .....|.+.+++.++|+|+++++++|+|+.|||+|+|+            ++
T Consensus       229 ~~g~~v~~~YG~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------------~~  293 (436)
T 3qov_A          229 MLNVKAYNSFGMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------------DR  293 (436)
T ss_dssp             HHTSEEEEEEEEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------------SC
T ss_pred             HhCccEEecCcchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------------Cc
Confidence            679999999999999544 333222   12336778889999999998999999999999999973            34


Q ss_pred             hccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----
Q 011011          346 QALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----  421 (495)
Q Consensus       346 ~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----  421 (495)
                      +.| .++||+|||+|+++++.|.|++... ..++|+||.||+|++ +|++|+|.+||++|.+||.|.+++|++.++    
T Consensus       294 ~~~-~~~~y~TGDl~~~~~~gc~cG~~~~-~il~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~  370 (436)
T 3qov_A          294 EMM-PLIRYRTRDLTRILPGKCPCGRTHL-RIDRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQ  370 (436)
T ss_dssp             CSS-CCCSEEEEEEECEECSCCTTCCCSC-EECCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTE
T ss_pred             CCc-eEEEEEcCCEEEEcCCCCCCCCCcc-ccCcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCC
Confidence            445 5789999999999997776643110 115899999999998 899999999999999999999999998754    


Q ss_pred             CeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhH-hccCCCccccEEEec--CCCCCCCCee
Q 011011          422 RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKW-TSKCSFQIGPIHVVD--EPFTVNFLCL  493 (495)
Q Consensus       422 ~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~--~~~~~~~~~l  493 (495)
                      +.+.++|+++ +.            ......+.+++++.+++.|+.+ +.+     ..+.+++  +.+.+. ||+
T Consensus       371 ~~l~a~v~~~-~~------------~~~~~~~~~~l~~~l~~~l~~~~~~p-----~~i~~v~~~~lP~t~-GKi  426 (436)
T 3qov_A          371 DEMIVEVELS-DL------------STDNYIELEKIRRDIIRQLKDEILVT-----PKVKLVKKGSLPQSE-GKA  426 (436)
T ss_dssp             EEEEEEEEEC-TT------------CCCCHHHHHHHHHHHHHHHHHHHSSC-----CEEEEECTTCCC-------
T ss_pred             cEEEEEEEEc-Cc------------cccchhhHHHHHHHHHHHHHHhcCCc-----eEEEEeCCCcccCcC-Ccc
Confidence            5688898886 30            0001112578999999999998 433     5788888  888888 886

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=4.6e-46  Score=380.57  Aligned_cols=341  Identities=18%  Similarity=0.188  Sum_probs=262.3

Q ss_pred             hhcccCCcchhhcccc--cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECCh-h
Q 011011           37 SRKAFSDSNDARKHYK--YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-W  110 (495)
Q Consensus        37 ~~~~~~~~~~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~  110 (495)
                      ...|+.++.+.+++++  ....+++++++++|||||||.||+|++||+++......+.   ..+++.++|++++.+|+ +
T Consensus        68 ~~lP~~~~~~l~~~~p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~  147 (443)
T 2y4o_A           68 AKFPFSTKNDLRDNYPFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGL  147 (443)
T ss_dssp             GGSCCBCHHHHHTTTTTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSS
T ss_pred             HHCCCCcHHHHHhhCCCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcc
Confidence            3445555555544333  2356789999999999999999999999999876554433   35778999999999998 6


Q ss_pred             hHHHHHHhHhHhhcCceEEec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHH
Q 011011          111 HVYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAY  187 (495)
Q Consensus       111 h~~~~~~~~~~~~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (495)
                      |..++...+.++..|++++..   ++..+++.++++++|++.++|+++..|++........                   
T Consensus       148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-------------------  208 (443)
T 2y4o_A          148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD-------------------  208 (443)
T ss_dssp             SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-------------------
T ss_pred             cccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC-------------------
Confidence            787777777788899998874   6889999999999999999999998887654321100                   


Q ss_pred             HHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHH-HHH
Q 011011          188 TAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDL-FYE  266 (495)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~-~~~  266 (495)
                                                                            ..+..+|.+++||+++++++.+ +.+
T Consensus       209 ------------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~  234 (443)
T 2y4o_A          209 ------------------------------------------------------PAESSLKIGIFGAEPWTQALRNEVET  234 (443)
T ss_dssp             ------------------------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHH
T ss_pred             ------------------------------------------------------cccCCceEEEECCCcCCHHHHHHHHH
Confidence                                                                  0123458999999999998744 445


Q ss_pred             HcCCeeeeccCcccCccc-eeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhh
Q 011011          267 AIGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATK  345 (495)
Q Consensus       267 ~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~  345 (495)
                      .+|+++++.||+||+++. +.......  ....+.+.+++.++|+|+++++++|+|+.|||+|+|            .|+
T Consensus       235 ~~g~~v~~~YG~TE~~g~~~~~~~~~~--~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~------------~t~  300 (443)
T 2y4o_A          235 RVGIDALDIYGLSEVMGPGVACECVET--KDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTS------------LTK  300 (443)
T ss_dssp             HHTCEEEEEEEETTTTEEEEEEECTTT--CCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE------------SSC
T ss_pred             HhCcCEEeccCchhhcCCeEEeccCCC--CCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeC------------CCc
Confidence            679999999999997432 33322211  112566778999999998889999999999999996            344


Q ss_pred             hccCCCCccccCceeeeccCCCCCCccccC-CeE-----EEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEec
Q 011011          346 QALDEDGWLNTGDIGWIAPHHSRGRSRRCG-GVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQ  419 (495)
Q Consensus       346 ~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~-G~l-----~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~  419 (495)
                      ++| .++||+|||+|++++          + |++     +|.||.||+|++ +|++|+|.+||++|.+||.|.++++++.
T Consensus       301 ~~~-p~~~y~TGDl~~~~~----------~cG~~~~~l~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~  368 (443)
T 2y4o_A          301 EAM-PVIRYRTRDLTALLP----------PTARAMRRLAKITGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITL  368 (443)
T ss_dssp             SSS-CCSSEEEEEEECEEC----------CSSSSSCEECCCCEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEE
T ss_pred             ccC-hhheeecCCEEEEcC----------CCCCCccccCccccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEE
Confidence            456 478999999999998          5 665     899999999998 8999999999999999999999998875


Q ss_pred             C----CCeeEEEEecCh--HHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEe--cCCCCCCCC
Q 011011          420 D----QRRPGAIIVPDK--EEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVV--DEPFTVNFL  491 (495)
Q Consensus       420 ~----~~~~~a~vv~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~  491 (495)
                      +    .+.+.++|++++  +.             .....+.++++++++++|+.+..    .+.++.++  ++.+.+.+|
T Consensus       369 ~~~~~~~~~~a~v~~~~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~~G  431 (443)
T 2y4o_A          369 SRDGHMDRLDLAVELRSEAAA-------------SVTDGERAALARELQHRIKTMVG----VSSGVTVLAAGGIPATATG  431 (443)
T ss_dssp             EEETTEEEEEEEEEECHHHHT-------------TCCHHHHHHHHHHHHHHHHHHTC----CCCEEEEECTTCSCCCTTS
T ss_pred             ecCCCCceEEEEEEECCcccc-------------cchhhHHHHHHHHHHHHHHHHhC----CceEEEEeCCCcccCccCC
Confidence            3    345778888875  20             00123457899999999998741    22567777  488888999


Q ss_pred             ee
Q 011011          492 CL  493 (495)
Q Consensus       492 ~l  493 (495)
                      |+
T Consensus       432 Ki  433 (443)
T 2y4o_A          432 KA  433 (443)
T ss_dssp             CC
T ss_pred             cc
Confidence            86

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=9e-46  Score=377.74  Aligned_cols=340  Identities=20%  Similarity=0.198  Sum_probs=260.7

Q ss_pred             hcccCCcchhhcccc--cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhh---cccCCCCCcEEEEECCh-hh
Q 011011           38 RKAFSDSNDARKHYK--YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLY---DIVPAENGDKFLSMLPP-WH  111 (495)
Q Consensus        38 ~~~~~~~~~~~~~~~--~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~-~h  111 (495)
                      ..|+.++.+.+++++  ...++++++++++|||||||.||+|++||+++......+.   ..++++++|++++.+|+ +|
T Consensus        67 ~lP~~~~~~l~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  146 (437)
T 2y27_A           67 RFPFTTKGDLRDSYPFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF  146 (437)
T ss_dssp             GSCCBCHHHHHHTTTTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred             HCCCCCHHHHHhcCCCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEccccccc
Confidence            445555555443332  3456789999999999999999999999999876554332   35778899999999998 78


Q ss_pred             HHHHHHhHhHhhcCceEEec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHH
Q 011011          112 VYERACGYFIFSRGIELMYT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYT  188 (495)
Q Consensus       112 ~~~~~~~~~~~~~G~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (495)
                      ..++...+.++..|++++..   ++..+++.++++++|++.++|+++..|++........                    
T Consensus       147 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--------------------  206 (437)
T 2y27_A          147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD--------------------  206 (437)
T ss_dssp             HHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC--------------------
T ss_pred             ccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC--------------------
Confidence            88887777788899998864   6889999999999999999999999887754321100                    


Q ss_pred             HHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHH-HHH
Q 011011          189 AFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLF-YEA  267 (495)
Q Consensus       189 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~-~~~  267 (495)
                                                                           ..+..+|.+++||+++++++.+. .+.
T Consensus       207 -----------------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~  233 (437)
T 2y27_A          207 -----------------------------------------------------PVQSSLRIGIFGAEPWTNDMRVAIEQR  233 (437)
T ss_dssp             -----------------------------------------------------GGGSSCCEEEEESSCCCHHHHHHHHHH
T ss_pred             -----------------------------------------------------cccCCeeEEEEcCccCCHHHHHHHHHH
Confidence                                                                 01234589999999999988544 456


Q ss_pred             cCCeeeeccCcccCccc-eeccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhh
Q 011011          268 IGVKVQVGYGLTESSPV-IAARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQ  346 (495)
Q Consensus       268 ~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~  346 (495)
                      +|+++++.||+||+++. ++......  ...++.+.+++.++|+|+++++++|+|+.|||+|+|            .|++
T Consensus       234 ~g~~v~~~YG~TE~~g~~~~~~~~~~--~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~------------~t~~  299 (437)
T 2y27_A          234 MGIDAVDIYGLSEVMGPGVASECVET--KDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTS------------LTKE  299 (437)
T ss_dssp             HTSEEEEEEEETTTTEEEEEECCTTT--CSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE------------SSCS
T ss_pred             HCcCEEecCCchhhcCCeeEEecCCC--CCceeEccCceEEEEEcCCCCCCCCCCCccEEEEec------------CCcC
Confidence            89999999999998433 33332221  112566778999999998889999999999999996            3445


Q ss_pred             ccCCCCccccCceeeeccCCCCCCccccCCeE-----EEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecC-
Q 011011          347 ALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVL-----VLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD-  420 (495)
Q Consensus       347 ~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l-----~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~-  420 (495)
                      +| .++||+|||+|+++++         +|++     +|.||.||+|++ +|++|+|.+||++|.+||.|.+++|++.+ 
T Consensus       300 ~~-~~~~y~TGDl~~~~~~---------~G~~~~~i~~i~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~  368 (437)
T 2y27_A          300 AL-PIIRYRTRDLTRLLPG---------TARTMRRMEKITGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTK  368 (437)
T ss_dssp             SS-CCCSEEEEEEECEECC---------SSSSSCEECCCCEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEE
T ss_pred             Cc-hhheeecCCEEEEeCC---------CCCCccccCccccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEee
Confidence            56 4789999999999872         2764     899999999998 89999999999999999999999888753 


Q ss_pred             ---CCeeEEEEecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEec--CCCCCCCCee
Q 011011          421 ---QRRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL  493 (495)
Q Consensus       421 ---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l  493 (495)
                         .+.+.++|+++++.             .....+.++++++++++|+.+..    .+..+.++.  +.+.+. ||+
T Consensus       369 ~~~~~~l~a~v~~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~----~p~~v~~v~~~~lP~t~-GKi  428 (437)
T 2y27_A          369 EGPLDVLTLNVEPCPET-------------APDTAAIQVAKQALAYDIKSLIG----VTAVINVLPVNGIERSV-GKA  428 (437)
T ss_dssp             ETTEEEEEEEECBCTTT-------------TTCHHHHHHHHHHHHHHHHHHHC----CCEEEEECCTTCSCCCS-SSC
T ss_pred             cCCCceEEEEEEECCCc-------------cchhhhHHHHHHHHHHHHHHhcC----CceEEEEeCCCCccCCC-Ccc
Confidence               35678888886531             00113457899999999999851    225677874  777777 886

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1e-40  Score=344.63  Aligned_cols=247  Identities=23%  Similarity=0.317  Sum_probs=197.3

Q ss_pred             cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCC------CcEEEEECChhhHHHHHH-hHhHhhcC
Q 011011           53 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAEN------GDKFLSMLPPWHVYERAC-GYFIFSRG  125 (495)
Q Consensus        53 ~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~p~~h~~~~~~-~~~~~~~G  125 (495)
                      .....++|+++|+|||||||.||||++||+++.+.+..+...++..+      +|++++++|++|.+++.. .+.++..|
T Consensus       177 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G  256 (480)
T 3t5a_A          177 FKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGG  256 (480)
T ss_dssp             CCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHT
T ss_pred             CCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcC
Confidence            34567899999999999999999999999999888877776677766      899999999999999875 56678999


Q ss_pred             ceEEec-------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccc
Q 011011          126 IELMYT-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFC  198 (495)
Q Consensus       126 ~~~~~~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (495)
                      +++++.       ++..+++.++++++| +..+|+++..++.......    .                           
T Consensus       257 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~----~---------------------------  304 (480)
T 3t5a_A          257 YPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDD----D---------------------------  304 (480)
T ss_dssp             CCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTG----G---------------------------
T ss_pred             CceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcc----c---------------------------
Confidence            998874       577889999999999 8899998877765321000    0                           


Q ss_pred             cccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcC------Ce
Q 011011          199 LTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG------VK  271 (495)
Q Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g------~~  271 (495)
                                                              .-...++.+|.+++||+++++++ +++.+.++      +.
T Consensus       305 ----------------------------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~  344 (480)
T 3t5a_A          305 ----------------------------------------MAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERV  344 (480)
T ss_dssp             ----------------------------------------GTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGG
T ss_pred             ----------------------------------------ccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhh
Confidence                                                    00123456699999999999987 56666663      36


Q ss_pred             eeeccCcccCccceeccCCCC-------------------------CCccccccCcCCcEEEEEeCCCCCcCCCCCccEE
Q 011011          272 VQVGYGLTESSPVIAARRPTC-------------------------NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIV  326 (495)
Q Consensus       272 v~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl  326 (495)
                      +++.||+||++..++......                         ...+++|+|++ ++++|+|+++++++|.|++|||
T Consensus       345 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl  423 (480)
T 3t5a_A          345 IRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEI  423 (480)
T ss_dssp             EEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEE
T ss_pred             ccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEE
Confidence            999999999988776544321                         23458999999 9999999888999999999999


Q ss_pred             EEccCCcchhccCCchhhhhccC-----------CCCccccCceeeeccCCCCCCccccCCeEEEEcc
Q 011011          327 KVRGSQVMQGYFKNPSATKQALD-----------EDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGR  383 (495)
Q Consensus       327 ~v~~p~~~~gY~~~~~~t~~~~~-----------~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR  383 (495)
                      +|+||+++.|||++|++|+++|.           .+|||+|||+|+++           ||+|+|+||
T Consensus       424 ~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-----------dG~l~~~GR  480 (480)
T 3t5a_A          424 WVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-----------DGKMFIIGR  480 (480)
T ss_dssp             EEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-----------TTEEEECC-
T ss_pred             EEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-----------CCEEEEeCC
Confidence            99999999999999999999995           56799999999985           599999998

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.98  E-value=3.5e-32  Score=271.00  Aligned_cols=270  Identities=16%  Similarity=0.125  Sum_probs=185.9

Q ss_pred             HHHHHhchhhhcccCCcchhhcccc----cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHh---hcccCCCCC
Q 011011           28 DEIIDLGRESRKAFSDSNDARKHYK----YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL---YDIVPAENG  100 (495)
Q Consensus        28 ~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~---~~~~~~~~~  100 (495)
                      +++.+..+....|+.+ .+++...+    +..++++++++|+|||||||.||+|++||+++......+   ...+++.++
T Consensus        57 ~~i~~~~dl~~lP~~~-~~l~~~~~~~~~p~~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~  135 (369)
T 3hgu_A           57 KDVKTINDLRQFSDIS-HCLRQEPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPS  135 (369)
T ss_dssp             HHCCSTGGGGGSCCCG-GGGTTSCGGGGSCTTSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCC
T ss_pred             HhCCCHHHHhhCCCch-hhhhcCCHHHcCCccCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCc
Confidence            4555555555566655 55443221    124578999999999999999999999999998877744   345677899


Q ss_pred             cEEEEECCh-hhHHHHHHhHhHhhcCceEEec--chH-----------------------hHHHHHhHhCCcEEEeCchH
Q 011011          101 DKFLSMLPP-WHVYERACGYFIFSRGIELMYT--AVR-----------------------NLKDDLQRYQPHYMISVPLV  154 (495)
Q Consensus       101 d~~l~~~p~-~h~~~~~~~~~~~~~G~~~~~~--~~~-----------------------~~~~~i~~~~~t~~~~~P~~  154 (495)
                      |++++++|+ +|.+++...+.++..|+.++..  ++.                       .+++.++++++|++.++|++
T Consensus       136 d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~  215 (369)
T 3hgu_A          136 GNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPV  215 (369)
T ss_dssp             CEEEECSCCTTCHHHHHHHHHHHHTTSCEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred             ceEEEecCCCchhhhHHHHHHHHHcCCEEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence            999999999 9999998877778888844442  344                       67779999999999999999


Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011011          155 YETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEK  234 (495)
Q Consensus       155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (495)
                      +..|++......                                                                    
T Consensus       216 ~~~l~~~~~~~~--------------------------------------------------------------------  227 (369)
T 3hgu_A          216 LRELLKRPEVVL--------------------------------------------------------------------  227 (369)
T ss_dssp             HHHHTTCHHHHH--------------------------------------------------------------------
T ss_pred             HHHHHhhhhhhc--------------------------------------------------------------------
Confidence            988866421100                                                                    


Q ss_pred             HHHHHHHhhcCCceEEEeccCCCChhH-HHHH-HHc-CCeeeeccCcccCccceeccCCCCCCccccccC------cCCc
Q 011011          235 LVYKKIQSAIGISKAGVSGGGSLPMHI-DLFY-EAI-GVKVQVGYGLTESSPVIAARRPTCNVLGSVGHP------INHT  305 (495)
Q Consensus       235 ~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~-~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~G~p------~~~~  305 (495)
                             ..+..+|.+++||+++++++ +.+. +.+ ++++++.||+||+++++..+..     .++|.|      .+++
T Consensus       228 -------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~~~G~~~~~~~~~~~~  295 (369)
T 3hgu_A          228 -------QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----TSESQQVIYDSFSPFI  295 (369)
T ss_dssp             -------HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----CTTCSSCEEECCTTTE
T ss_pred             -------cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----ccCCCcccccCCCCCe
Confidence                   01122389999999999987 5555 567 8999999999998866543221     147888      9999


Q ss_pred             EEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEcccc
Q 011011          306 EIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAK  385 (495)
Q Consensus       306 ~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~  385 (495)
                      +++|+|+++++++|+|+.|||+|++.            +++.+ - -.|+|||++...+..+. ..++....+..++|.+
T Consensus       296 ~v~ivD~~~g~~vp~G~~GEl~vt~l------------~~~~~-l-~ry~tgD~~~~~~~~~g-~~~d~~~~v~~~~~~~  360 (369)
T 3hgu_A          296 TYDVVDSITAQTVEYGERGNVIVTHL------------SPWAF-Y-PRVAERDTAIRLPGVSG-FAGDRLADIEPLKISE  360 (369)
T ss_dssp             EEEEECTTTCSBCCTTCEEEEEEEEE------------ETTEE-E-EEEEEEEEEEEECCSTT-CSSCEEEEEEECC---
T ss_pred             EEEEECCCCCcCCCCCCceEEEEEEc------------Ccccc-c-ccccCCceEEEecCCCC-CcCcccccceeccccC
Confidence            99999987899999999999999852            22233 1 23999999988763221 1222223466778888


Q ss_pred             ceEEeCCce
Q 011011          386 DTIVLSTGE  394 (495)
Q Consensus       386 d~i~~~~G~  394 (495)
                      +..++ .|.
T Consensus       361 ~~~~i-~gv  368 (369)
T 3hgu_A          361 GRKVI-EGV  368 (369)
T ss_dssp             ---------
T ss_pred             CCcee-eec
Confidence            87776 664

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=98.97  E-value=1.6e-09  Score=86.96  Aligned_cols=93  Identities=13%  Similarity=0.030  Sum_probs=62.4

Q ss_pred             ccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHcCCCcCCccccChHHH
Q 011011          382 GRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRLSIVHADASELSKEKT  457 (495)
Q Consensus       382 GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~l  457 (495)
                      .|+||||++ +|.||+|.+||++|.+||+|.++++++.++    +.+.++|+..+..             ........++
T Consensus         1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~-------------~~~~~~~~~l   66 (109)
T 3lax_A            1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF-------------TDDYGRLQAL   66 (109)
T ss_dssp             CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC-------------CCCHHHHHHH
T ss_pred             CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc-------------ccccchhhhh
Confidence            489999998 999999999999999999999999998754    3455677665420             0011123556


Q ss_pred             HHHHHHHHHhHhccCCCccccEEEec--CCCCCCCCee
Q 011011          458 ISLLYGELRKWTSKCSFQIGPIHVVD--EPFTVNFLCL  493 (495)
Q Consensus       458 ~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l  493 (495)
                      .+.+++.+..+..-   . .++.+++  +.+.+ +||+
T Consensus        67 ~~~i~~~l~~~~gv---~-~~v~~v~~~~lPrt-sGKi   99 (109)
T 3lax_A           67 TREITRQLKDEILV---T-PRVKLVPKGALPKS-EGKA   99 (109)
T ss_dssp             HHHHHHHHHHHHSS---C-CEEEEECTTCSCCC----C
T ss_pred             HHHHHHHHHHHhCC---c-cceEEEcCCeecCC-CCCc
Confidence            67777777665421   1 3566775  56665 6885

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.92  E-value=1.2e-08  Score=104.95  Aligned_cols=132  Identities=13%  Similarity=0.155  Sum_probs=81.5

Q ss_pred             eEEEeccCCCChhHHHHHHHc-CCeee-eccCcccCccceeccCCCCCCcccccc-CcC-CcEEEEEeCCCC--------
Q 011011          248 KAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PIN-HTEIKIVDAETN--------  315 (495)
Q Consensus       248 ~~i~~gg~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~-~~~v~i~d~~~~--------  315 (495)
                      .++.+||  +.+-...+..-+ +.+++ ..|++||+-  +..+......++..+. .+| ..-++.++.+..        
T Consensus       308 ~~~~tG~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~  383 (609)
T 4b2g_A          308 DVIVTGA--MAQYIPTLDYYSGGLPLACTMYASSECY--FGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDS  383 (609)
T ss_dssp             EEECSGG--GGGGHHHHHHHHTSCCEECCEEECSSCE--EEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSS
T ss_pred             EEEccCC--hHHHHHHHHHHcCCCccccCccccccee--eeeecCCCCCcccCceeecCCcEEEEEEeccccccccccCC
Confidence            4555555  333334444333 56766 899999963  3322211111112221 122 244566643321        


Q ss_pred             -------CcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceE
Q 011011          316 -------EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTI  388 (495)
Q Consensus       316 -------~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i  388 (495)
                             ..+..|+.+||+++..   .|+|.              |++||++++..-      .+....+.|+||.+++|
T Consensus       384 ~~~~v~l~eVe~G~~YelViTt~---~GL~R--------------Yr~GD~v~v~~f------~~~~p~i~~~gR~~~~l  440 (609)
T 4b2g_A          384 PPRLVDLAHVEVGKEYELVITTY---AGLYR--------------YRVGDILRVTGF------HNSAPQFHFVRRKNVLL  440 (609)
T ss_dssp             CCCCEEGGGCCTTCEEEEEEECT---TSCCS--------------EEEEEEEEEEEE------ETTEEEEEEEEETTCCB
T ss_pred             CCccccHhHcCCCCeEEEehhhh---hhhhh--------------eecCCEEEEeec------CCCCcEEEEEEecCCeE
Confidence                   3467899999999743   23332              999999988730      00136899999999999


Q ss_pred             EeCCceeecchHHHHHHhc
Q 011011          389 VLSTGENVEPLELEEAALR  407 (495)
Q Consensus       389 ~~~~G~~v~~~~IE~~l~~  407 (495)
                      .+ .|+++++.+||+++.+
T Consensus       441 ~~-~Geki~~~~v~~av~~  458 (609)
T 4b2g_A          441 SI-DSDKTDEAELQKAVDN  458 (609)
T ss_dssp             CS-SSCCBCHHHHHHHHHH
T ss_pred             Ec-cccCCCHHHHHHHHHH
Confidence            97 8999999999998874

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.85  E-value=1.4e-07  Score=96.61  Aligned_cols=136  Identities=11%  Similarity=0.047  Sum_probs=82.7

Q ss_pred             ChhHHHHHHHc-CCeee-eccCcccCccceeccCCCCCCcccccc-CcCC-cEEEEEeCCC----------CCcCCCCCc
Q 011011          258 PMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PINH-TEIKIVDAET----------NEVLPAGSK  323 (495)
Q Consensus       258 ~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~v~i~d~~~----------~~~~~~g~~  323 (495)
                      .+-...+...+ +.+++ ..|++||+-  +..+......++..+. .+|+ .-++.++.+.          -..+..|+.
T Consensus       316 ~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~~~~~~~v~l~eve~G~~  393 (581)
T 4epl_A          316 EPYVPKLRHYAGDLPLVSHDYGSSEGW--IAANVTPRLSPEEATFAVIPNLGYFEFLPVSETGEGEEKPVGLTQVKIGEE  393 (581)
T ss_dssp             GGGHHHHHHHHTTSCEEECCEEETTEE--EEECCCTTSCTTTCCEEECTTSCEEEEEEC-------CCCEEGGGCCTTCE
T ss_pred             HHHHHHHHHHcCCCccccCceecccee--eeeecCCCCCccccceeecCCcEEEEEEecccccCCCCceeeHHHcCCCCe
Confidence            33344444434 56766 899999963  3322221111111111 1222 3345553221          135678999


Q ss_pred             cEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHH
Q 011011          324 GIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEE  403 (495)
Q Consensus       324 GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~  403 (495)
                      +||+++..+   |.|.              |++||++++....+      ....+.|+||.++++.+ .|+++++.+||+
T Consensus       394 YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~------~~p~~~~~gR~~~~l~~-~Ge~~~~~~v~~  449 (581)
T 4epl_A          394 YEVVITNYA---GLYR--------------YRLGDVVKVIGFYN------NTPQLKFICRRNLILSI-NIDKNTERDLQL  449 (581)
T ss_dssp             EEEEEESTT---SCSS--------------EEEEEEEEEEEEET------TEEEEEEEEETTCCBCS-SSCCBCHHHHHH
T ss_pred             EEEEEeecc---ceee--------------EEcCCEEEEecccC------CCcEEEEEeecCCeEEe-eeeECCHHHHHH
Confidence            999998432   2221              99999998875111      12579999999999998 899999999999


Q ss_pred             HHhc------Cc--ccceEEEEec
Q 011011          404 AALR------SS--LIRQIVVIGQ  419 (495)
Q Consensus       404 ~l~~------~p--~V~~~~vvg~  419 (495)
                      ++.+      ..  .|.|..++..
T Consensus       450 al~~a~~~l~~~~~~l~eft~~~d  473 (581)
T 4epl_A          450 SVESAAKRLSEEKIEVIDFSSYID  473 (581)
T ss_dssp             HHHHHHHHHHTTTCCEEEEEEEEE
T ss_pred             HHHHHHHhhcccCCeEEEEEEecC
Confidence            9875      12  4566666554

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.83  E-value=8.8e-08  Score=98.30  Aligned_cols=134  Identities=12%  Similarity=0.149  Sum_probs=82.6

Q ss_pred             ceEEEeccCCCChhHHHHHHHc-CCeee-eccCcccCccceeccCCCCCCcccccc-CcC-CcEEEEEeCCCC-------
Q 011011          247 SKAGVSGGGSLPMHIDLFYEAI-GVKVQ-VGYGLTESSPVIAARRPTCNVLGSVGH-PIN-HTEIKIVDAETN-------  315 (495)
Q Consensus       247 ~~~i~~gg~~l~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~-~~~v~i~d~~~~-------  315 (495)
                      +.++.+||  +.+-...+..-+ +.+++ ..|++||+.  +..+......+...+. .++ .+-++.++.+..       
T Consensus       302 l~~~~~G~--~~~Y~~~l~~~~g~~p~~~~~Y~ASEg~--~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v~  377 (581)
T 4eql_A          302 IETVVTGS--MGQYVPMLNYYCNDLPLVSTTYGSSETT--FGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVVD  377 (581)
T ss_dssp             EEEECSGG--GGGGHHHHHHHHTTCCEECCEEECSSCE--EEECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCEE
T ss_pred             EEEEcCCC--hHHHHHHHHHHcCCCccccCccccccce--eeeccCCCCCcccCceeecCCcEEEEEEeccccCCCcEeC
Confidence            44556666  333334444433 57776 899999963  2322211111112221 122 245566653321       


Q ss_pred             -CcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCce
Q 011011          316 -EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGE  394 (495)
Q Consensus       316 -~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~  394 (495)
                       ..+..|+.+||+++..+   |.|.              |++||++++..-.      +....+.|+||.+|+|.+ .|+
T Consensus       378 l~eVe~G~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~------~~~p~i~f~gR~~~~l~~-~Ge  433 (581)
T 4eql_A          378 LEDVKLGCTYEPVVTNFA---GLYR--------------MRVGDIVLVTGFY------NNAPQFKFVRRENVVLSI-DSD  433 (581)
T ss_dssp             GGGCCTTCEEEEEEECSS---SCCS--------------EECCEEEEEEEEE------TTEEEEEEEEETTEEECS-SSC
T ss_pred             HHHcCCCceEEEEEeecc---ceee--------------EEcCCEEEEcccC------CCCcEEEEEEecCCEEEe-eee
Confidence             24568999999998432   2221              9999999887400      012579999999999998 899


Q ss_pred             eecchHHHHHHhcC
Q 011011          395 NVEPLELEEAALRS  408 (495)
Q Consensus       395 ~v~~~~IE~~l~~~  408 (495)
                      ++++.+||+++.+.
T Consensus       434 kl~~~~v~~al~~a  447 (581)
T 4eql_A          434 KTNEEDLFKAVSQA  447 (581)
T ss_dssp             CEEHHHHHHHHHHC
T ss_pred             ECCHHHHHHHHHHH
Confidence            99999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	495
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	9e-43
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-34
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	1e-05
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	1e-32
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-04
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	8e-24
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-09
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	6e-21
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	4e-20
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	1e-18

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  158 bits (401), Expect = 9e-43
 Identities = 87/493 (17%), Positives = 149/493 (30%), Gaps = 121/493 (24%)

Query: 19  VEEIPVFSYDEIIDLGRESRKAFSDS--NDARKHYKYETIGSDDIATYVYTSGTTGNPKG 76
           VE + V          +E R  +       A   ++ E + ++D    +YTSG+TG PKG
Sbjct: 210 VEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKG 269

Query: 77  VMLTHKNLL-HQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF--IFSRGIELMYTAV 133
           V+ T    L +   +   +     GD +        V   +   +  +      LM+  V
Sbjct: 270 VLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGV 329

Query: 134 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI 193
            N                      +   + K                 +++  YTA    
Sbjct: 330 PNWPTP----------------ARMCQVVDKH----------------QVNILYTA---- 353

Query: 194 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 253
                       P+ + AL+      I       L +L                    S 
Sbjct: 354 ------------PTAIRALMAEGDKAIEGTDRSSLRIL-------------------GSV 382

Query: 254 GGSLPMH-IDLFYEAIG---VKVQVGYGLTESSPVIAARRPTCNVL--GSVGHPINHTEI 307
           G  +     + +++ IG     V   +  TE+   +    P    L  GS   P    + 
Sbjct: 383 GEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQP 442

Query: 308 KIVDAETNEVLPAGSKGIVKVRGSQ--VMQGYFKNPSATKQALDE--DGWLNTGDIGWIA 363
            +VD E +      ++G + +  S     +  F +    +Q           +GD     
Sbjct: 443 ALVDNEGHPQ-EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRD 501

Query: 364 PHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRR 423
                       G   + GR  D + +S G  +   E+E A +    I +  V+G     
Sbjct: 502 ED----------GYYWITGRVDDVLNVS-GHRLGTAEIESALVAHPKIAEAAVVGIPH-- 548

Query: 424 PGAIIVPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGP----- 478
                   K + + A     +      E S E     LY E+R W      +IGP     
Sbjct: 549 ------AIKGQAIYAY----VTLNHGEEPSPE-----LYAEVRNW---VRKEIGPLATPD 590

Query: 479 -IHVVDE-PFTVN 489
            +H  D  P T +
Sbjct: 591 VLHWTDSLPKTRS 603

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  133 bits (334), Expect = 3e-34
 Identities = 73/390 (18%), Positives = 139/390 (35%), Gaps = 30/390 (7%)

Query: 77  VMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA---V 133
           V+L   NLL  + ++   +        +    P             +  + +   A   +
Sbjct: 115 VLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGM 174

Query: 134 RNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRI 193
                     +        LV  +L + +      S     +    +  ++     +   
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAAT 234

Query: 194 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 253
             G        +      +  +    +      P   LA     +     +   +  V G
Sbjct: 235 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVG 294

Query: 254 GGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNV-----------LGSVGHPI 302
           G + P  +   +E +GV+V+ GYGLTE+SPV+       ++               G PI
Sbjct: 295 GSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 354

Query: 303 NHTEIKIVDAETNEVLP-AGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGW 361
               +++ D E   V     + G V+++G  +  GY+ N  AT+ AL  DG+  TGDI  
Sbjct: 355 PLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAV 414

Query: 362 IAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIG--- 418
                         G + ++ R KD ++ S GE +  ++LE A +    +++  V+    
Sbjct: 415 WDE----------EGYVEIKDRLKD-LIKSGGEWISSVDLENALMGHPKVKEAAVVAIPH 463

Query: 419 -QDQRRPGAIIVPDKEEVLMAAKRLSIVHA 447
            + Q RP A++VP  E+         ++ A
Sbjct: 464 PKWQERPLAVVVPRGEKPTPEELNEHLLKA 493

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 60  DIATYVYTSGTTGNPKGVMLTHKNLLHQIR--SLYDIVPAENGDKFLSMLPPWHVYERAC 117
                 YT+GTTG PKGV+ +H+ L+      SL D       D  L ++P +HV     
Sbjct: 170 AACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCL 229

Query: 118 GYFIFSRGIELMYTAVRNLKDD----LQRYQPHYMISVPLVYETLYSGIQKQIFTSSAAR 173
            Y     G + +    R                +   VP V+  L   ++         R
Sbjct: 230 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLR 289

Query: 174 RVV 176
           R+V
Sbjct: 290 RLV 292

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  128 bits (322), Expect = 1e-32
 Identities = 64/267 (23%), Positives = 106/267 (39%), Gaps = 21/267 (7%)

Query: 197 FCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGS 256
             L    ++  +L +L D+     +             L+ K   S   + +    G   
Sbjct: 259 VVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLS--NLHEIASGGAPL 316

Query: 257 LPMHIDLFYEAIGV-KVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDAETN 315
                +   +   +  ++ GYGLTE++  I       +  G+VG  +   E K+VD +T 
Sbjct: 317 SKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTG 376

Query: 316 EVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCG 375
           + L    +G + VRG  +M GY  NP AT   +D+DGWL++GDI +              
Sbjct: 377 KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEH-------- 428

Query: 376 GVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIVPD 431
               +  R K  I    G  V P ELE   L+   I    V G         P A++V +
Sbjct: 429 --FFIVDRLKSLIKYK-GYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLE 485

Query: 432 KEEVLMAAKRLSIVHADASELSKEKTI 458
             + +   +   IV   AS+++  K +
Sbjct: 486 HGKTMTEKE---IVDYVASQVTTAKKL 509

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 12/154 (7%)

Query: 59  DDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACG 118
             IA  + +SG+TG PKGV L H+    +     D +         ++L     +     
Sbjct: 187 KTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGM 246

Query: 119 YFIFS------RGIELMYTAVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAA 172
           +          R + +           LQ Y+    + VP ++           +  S  
Sbjct: 247 FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNL 306

Query: 173 RRVVA------RALIRISFAYTAFKRIYEGFCLT 200
             + +      + +            I +G+ LT
Sbjct: 307 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 340

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (255), Expect = 8e-24
 Identities = 44/250 (17%), Positives = 83/250 (33%), Gaps = 27/250 (10%)

Query: 206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLF 264
            S    +ID             L LL           ++   +   S G  +   + + +
Sbjct: 322 YSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWY 381

Query: 265 YEAIG---VKVQVGYGLTESSPVIAARRPTCNV---LGSVGHPINHTEIKIVDAETNEVL 318
            E IG   + +   Y  TES   +             GS   P    +  ++D  T E L
Sbjct: 382 SEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEEL 441

Query: 319 -PAGSKGIVKVRGS--QVMQGYFKNPSATKQAL--DEDGWLNTGDIGWIAPHHSRGRSRR 373
             + ++G++ V+ +     +  +KN             G+  TGD               
Sbjct: 442 NTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKD-------- 493

Query: 374 CGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQD----QRRPGAIIV 429
             G + + GR  D + +S G  +   E+E A +   ++ +  V+G +     +   A +V
Sbjct: 494 --GYIWILGRVDDVVNVS-GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVV 550

Query: 430 PDKEEVLMAA 439
              +     A
Sbjct: 551 LKNKSSWSTA 560

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (139), Expect = 1e-09
 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 9/127 (7%)

Query: 41  FSDSNDARKHYKYETIGSDDIATYVYTSGTTGNPKGVMLTHKN-LLHQIRSLYDIVPAEN 99
            ++    + +Y    + S+D    +YTSG+TG PKGV  +    LL  + ++        
Sbjct: 221 ATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQ 280

Query: 100 GDKFLSMLPPWHVYER--------ACGYFIFSRGIELMYTAVRNLKDDLQRYQPHYMISV 151
            D F +      +             G           Y       D +  ++       
Sbjct: 281 EDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVA 340

Query: 152 PLVYETL 158
           P     L
Sbjct: 341 PTALRLL 347

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 93.6 bits (231), Expect = 6e-21
 Identities = 53/260 (20%), Positives = 95/260 (36%), Gaps = 17/260 (6%)

Query: 194 YEGFCLTRNQKQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSG 253
            +G  +   + +P   + L+       + A    L  LA    +      +   +     
Sbjct: 221 LDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFA 280

Query: 254 GGSLP-MHIDLFYEAIGVKVQVGYGLTESSPVIAARRPTCNVLGSVGHPINHTEIKIVDA 312
           G ++P   ++  ++ +  +    YG TE+   +  R+P      + G       ++I   
Sbjct: 281 GATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGG 340

Query: 313 ETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSR 372
               V       ++         GY   P AT + L +DGW  T D+    P        
Sbjct: 341 VDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPE------- 392

Query: 373 RCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQRRPG----AII 428
              G + + GR  D I+   GEN+ P E+E     +  + ++VVIG   +R G    A +
Sbjct: 393 ---GTVRILGRVDDMIISG-GENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACV 448

Query: 429 VPDKEEVLMAAKRLSIVHAD 448
           VP   E L A    +   + 
Sbjct: 449 VPRLGETLSADALDTFCRSS 468

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 90.7 bits (224), Expect = 4e-20
 Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 14/226 (6%)

Query: 215 WLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQV 274
             + + I      +  L    V       I   +  ++ G +    +   ++   V    
Sbjct: 247 VKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKE-KVTYIN 305

Query: 275 GYGLTESSPVIAARRPTCNVLG---SVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGS 331
            YG TE++        T   +G    +G PI +T+I IVD E  ++   G  G + + G 
Sbjct: 306 AYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGE 364

Query: 332 QVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLS 391
            + +GY+K P  T Q   ++ ++  G+  +     +R       G +   GR  + + + 
Sbjct: 365 GLARGYWKRPELTSQKFVDNPFV-PGEKLYKTGDQAR---WLSDGNIEYLGRIDNQVKIR 420

Query: 392 TGENVEPLELEEAALRSSLIRQIVVIG----QDQRRPGAIIVPDKE 433
            G  VE  E+E   L+   I +  V      Q+Q    A  V +K 
Sbjct: 421 -GHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH 465

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 86.6 bits (213), Expect = 1e-18
 Identities = 47/241 (19%), Positives = 80/241 (33%), Gaps = 17/241 (7%)

Query: 206 PSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFY 265
           P     LI+     I   +     +        +      +    V G            
Sbjct: 261 PDDAFPLIEREKVTITALVPPLAMVW-MDAASSRRDDLSSLQVLQVGGAKFSAEAARRVK 319

Query: 266 EAIGVKVQVGYGLTESSPVIAARRPTCNV-LGSVGHPINHTEIKIVDAETNEVLPAGSKG 324
              G  +Q  +G+ E             + + + G P++  +   V  + +  +  G  G
Sbjct: 320 AVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETG 379

Query: 325 IVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRA 384
            +  RG   ++GY+K       +  EDG+  TGDI  +             G +V+EGRA
Sbjct: 380 HLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD----------GYIVVEGRA 429

Query: 385 KDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK 440
           KD I    GE V   E+E   L    +    ++    +    R    I+P  E    A  
Sbjct: 430 KDQINRG-GEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAEL 488

Query: 441 R 441
           +
Sbjct: 489 K 489

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	495
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.8e-52  Score=443.77  Aligned_cols=335  Identities=17%  Similarity=0.174  Sum_probs=279.0

Q ss_pred             cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHH-HHHhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEe
Q 011011           53 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQ-IRSLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMY  130 (495)
Q Consensus        53 ~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~  130 (495)
                      +..++++|+++|+|||||||.||||++||++++.. ...+...+++.++|++++.+|++|++++.. .+.++..|+++++
T Consensus       246 ~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl  325 (643)
T d1pg4a_         246 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM  325 (643)
T ss_dssp             CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred             CCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEE
Confidence            34568899999999999999999999999996544 444566678999999999999999999876 4567999999887


Q ss_pred             c-------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCC
Q 011011          131 T-------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQ  203 (495)
Q Consensus       131 ~-------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (495)
                      .       ++..+++.++++++|++.++|+++..|++......                                     
T Consensus       326 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~-------------------------------------  368 (643)
T d1pg4a_         326 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI-------------------------------------  368 (643)
T ss_dssp             ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT-------------------------------------
T ss_pred             ecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhc-------------------------------------
Confidence            3       57889999999999999999999988765311100                                     


Q ss_pred             CCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHH-HHHHHc---CCeeeeccCcc
Q 011011          204 KQPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHID-LFYEAI---GVKVQVGYGLT  279 (495)
Q Consensus       204 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~-~~~~~~---g~~v~~~YG~T  279 (495)
                                                          -...++++|.+++||+++++++. .+.+.+   ++++++.||+|
T Consensus       369 ------------------------------------~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~T  412 (643)
T d1pg4a_         369 ------------------------------------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT  412 (643)
T ss_dssp             ------------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred             ------------------------------------cccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechh
Confidence                                                00234556999999999999874 455666   47799999999


Q ss_pred             cCccceeccCCC--CCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc--CCcchhccCCchhhhhcc--CCCCc
Q 011011          280 ESSPVIAARRPT--CNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG--SQVMQGYFKNPSATKQAL--DEDGW  353 (495)
Q Consensus       280 E~~~~~~~~~~~--~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~--p~~~~gY~~~~~~t~~~~--~~~~~  353 (495)
                      |+++++....+.  ..+.+++|+|++|++++|+|+ .|++++.|+.|||+|+|  |+++.|||++++.+.+++  ..+||
T Consensus       413 E~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~-~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~  491 (643)
T d1pg4a_         413 ETGGFMITPLPGAIELKAGSATRPFFGVQPALVDN-EGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM  491 (643)
T ss_dssp             GGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-TCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred             hccceEEecCCCccCCCCCccccccCCCEEEEECC-CCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCe
Confidence            998776654432  346789999999999999995 48899999999999999  578999999999888775  34799


Q ss_pred             cccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEe
Q 011011          354 LNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIV  429 (495)
Q Consensus       354 ~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv  429 (495)
                      |+|||+|++++          +|+++|+||+||+|++ +|++|+|.|||++|.+||.|.||+|+|.++    +.++|+|+
T Consensus       492 ~~TGDl~~~d~----------dG~l~i~GR~dd~ik~-~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv  560 (643)
T d1pg4a_         492 YFSGDGARRDE----------DGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVT  560 (643)
T ss_dssp             EEEEEEEEECT----------TSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             EEcCCEEEECC----------CceEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEE
Confidence            99999999999          8999999999999998 899999999999999999999999999864    35789999


Q ss_pred             cChHHHHHHHHHcCCCcCCccccC---hHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          430 PDKEEVLMAAKRLSIVHADASELS---KEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      ++++                ...+   ..+++++++++|+.++.     +++|.++++.|.+.+||+
T Consensus       561 ~~~~----------------~~~~~~~~~~i~~~~~~~L~~~~v-----P~~i~~v~~lP~T~sGKi  606 (643)
T d1pg4a_         561 LNHG----------------EEPSPELYAEVRNWVRKEIGPLAT-----PDVLHWTDSLPKTRSGKI  606 (643)
T ss_dssp             ECTT----------------CCCCHHHHHHHHHHHHHHTCGGGC-----CSEEEECSCCCBCTTSCB
T ss_pred             ECCC----------------CCCCHHHHHHHHHHHHhhCCcccC-----ccEEEEECCCCCCCCcCc
Confidence            8754                2222   35788889998888874     489999999999999986

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=2.1e-49  Score=412.95  Aligned_cols=334  Identities=25%  Similarity=0.352  Sum_probs=266.6

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcc---cCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEe
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDI---VPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMY  130 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~  130 (495)
                      ....++++++|+|||||||.||+|++||++++.........   ....+++++++++|++|.++....+..+..++....
T Consensus       182 ~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  261 (541)
T d1lcia_         182 SFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL  261 (541)
T ss_dssp             CCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE
T ss_pred             ccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccccccccccccc
Confidence            34567899999999999999999999999988766655433   356788999999999999999888777777776665


Q ss_pred             c---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          131 T---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       131 ~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                      .   ........+..+++|.+..+|..+..++......                                          
T Consensus       262 ~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~------------------------------------------  299 (541)
T d1lcia_         262 MYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLID------------------------------------------  299 (541)
T ss_dssp             CSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGG------------------------------------------
T ss_pred             ccccccchhHHHHhhhhccccccCcccccccccccccc------------------------------------------
Confidence            3   5778889999999999999999888775431110                                          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCC-eeeeccCcccCccce
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGV-KVQVGYGLTESSPVI  285 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~-~v~~~YG~TE~~~~~  285 (495)
                                                       ...+..++.+.+||+++++.. ..+.+.++. .++++||+||++..+
T Consensus       300 ---------------------------------~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~  346 (541)
T d1lcia_         300 ---------------------------------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI  346 (541)
T ss_dssp             ---------------------------------GSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCS
T ss_pred             ---------------------------------ccccccceEEEecccccccccccccccccCCceeeecCCccccCceE
Confidence                                             012334589999999998887 555667764 689999999999988


Q ss_pred             eccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccC
Q 011011          286 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPH  365 (495)
Q Consensus       286 ~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~  365 (495)
                      +.........+++|+|+|+++++|+|+|++++++.|+.|||+|+|++++.||+++++.+...+..++||+|||+|++++ 
T Consensus       347 ~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~-  425 (541)
T d1lcia_         347 LITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE-  425 (541)
T ss_dssp             EECCCC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECT-
T ss_pred             EecCcccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcC-
Confidence            8887777888999999999999999999999999999999999999999999999999999998899999999999998 


Q ss_pred             CCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHH
Q 011011          366 HSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKR  441 (495)
Q Consensus       366 ~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~  441 (495)
                               +|.+++.||.||+|++ +|++|+|.+||++|.+||.|.+|+|++.++    +.+.|+|+++++        
T Consensus       426 ---------~G~~~~~GR~~d~i~~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~--------  487 (541)
T d1lcia_         426 ---------DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG--------  487 (541)
T ss_dssp             ---------TCCEEEC-----CEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT--------
T ss_pred             ---------CeEEEEeeeecCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCC--------
Confidence                     8999999999999998 899999999999999999999999998754    357788887653        


Q ss_pred             cCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          442 LSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                              ...+.++++++++++|..+..    .++.|.++++.+.+.+||+
T Consensus       488 --------~~~~~~~l~~~~~~~l~~~~~----~p~~i~~v~~lP~t~~GKi  527 (541)
T d1lcia_         488 --------KTMTEKEIVDYVASQVTTAKK----LRGGVVFVDEVPKGLTGKL  527 (541)
T ss_dssp             --------CCCCHHHHHHHHHHHSCGGGS----CTTEEEEESSCCC-----C
T ss_pred             --------CCCCHHHHHHHHHHhCCcccc----CCcEEEEeCCCCcCCCcCc
Confidence                    456778899999998877641    2467899999999999986

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-50  Score=423.99  Aligned_cols=345  Identities=18%  Similarity=0.210  Sum_probs=272.9

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHH-HhhcccCCCCCcEEEEECChhhHHHHHH-hHhHhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIR-SLYDIVPAENGDKFLSMLPPWHVYERAC-GYFIFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~h~~~~~~-~~~~~~~G~~~~~~  131 (495)
                      ...+++|+++|+|||||||.||||+++|++++.... .....+++.++|++++++|++|++++.. .+.++..|+++++.
T Consensus       234 ~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~  313 (640)
T d1ry2a_         234 TPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVF  313 (640)
T ss_dssp             CCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEE
T ss_pred             CCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEe
Confidence            345689999999999999999999999999776544 4445678899999999999999999876 45668889887763


Q ss_pred             -------chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCC
Q 011011          132 -------AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQK  204 (495)
Q Consensus       132 -------~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (495)
                             ++..+++.++++++|.+.++|+++..|........                                      
T Consensus       314 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------------------------------------  355 (640)
T d1ry2a_         314 EGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI--------------------------------------  355 (640)
T ss_dssp             CSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSS--------------------------------------
T ss_pred             cCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcccccc--------------------------------------
Confidence                   57889999999999999999999877643210000                                      


Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcC---CeeeeccCccc
Q 011011          205 QPSYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIG---VKVQVGYGLTE  280 (495)
Q Consensus       205 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g---~~v~~~YG~TE  280 (495)
                                                         -...++.+|.+++||+++++++ +.+.+.+|   .++++.||+||
T Consensus       356 -----------------------------------~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te  400 (640)
T d1ry2a_         356 -----------------------------------ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTE  400 (640)
T ss_dssp             -----------------------------------SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTT
T ss_pred             -----------------------------------ccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccc
Confidence                                               0023456699999999999998 45556665   56999999999


Q ss_pred             CccceeccCCC---CCCccccccCcCCcEEEEEeCCCCCcC-CCCCccEEEEcc--CCcchhccCCchhhhhccC--CCC
Q 011011          281 SSPVIAARRPT---CNVLGSVGHPINHTEIKIVDAETNEVL-PAGSKGIVKVRG--SQVMQGYFKNPSATKQALD--EDG  352 (495)
Q Consensus       281 ~~~~~~~~~~~---~~~~~~~G~p~~~~~v~i~d~~~~~~~-~~g~~GEl~v~~--p~~~~gY~~~~~~t~~~~~--~~~  352 (495)
                      ++.........   ..+++++|.|+++++++|+|+++++.+ +.+..|||++++  |+++.|||+|++.|.++|.  .+|
T Consensus       401 ~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~g  480 (640)
T d1ry2a_         401 SGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG  480 (640)
T ss_dssp             TCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT
T ss_pred             cccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCC
Confidence            98766544332   346789999999999999998877655 456679999998  6899999999999999874  469


Q ss_pred             ccccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEE
Q 011011          353 WLNTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAII  428 (495)
Q Consensus       353 ~~~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~v  428 (495)
                      ||+|||+|++++          +|+++|+||+||+|+. +|++|+|.|||++|.+||.|.+|+|+|.++    +.+.|+|
T Consensus       481 w~~TGDlg~~d~----------dG~l~i~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~V  549 (640)
T d1ry2a_         481 YYFTGDGAAKDK----------DGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFV  549 (640)
T ss_dssp             SEEEEEEEEECT----------TCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEE
T ss_pred             eEEcCCceeECC----------CCCEEEEEcCCCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEE
Confidence            999999999998          8999999999999997 899999999999999999999999999865    3588999


Q ss_pred             ecChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          429 VPDKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       429 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      +++++.......+.      ....-.+++.++++++|+.|+     .+++|.++++.|.+.+||+
T Consensus       550 v~~~~~~~~~~~~~------~~~~l~~~l~~~~~~~L~~~~-----~P~~i~~v~~lP~T~sGKi  603 (640)
T d1ry2a_         550 VLKNKSSWSTATDD------ELQDIKKHLVFTVRKDIGPFA-----APKLIILVDDLPKTRSGKI  603 (640)
T ss_dssp             EEC------------------CCSHHHHHHHHHHHHTCTTT-----SCSEEEECSCCCBCTTSCB
T ss_pred             EEcCCCCccccchH------HHHHHHHHHHHHHHhhCCCCC-----CceEEEEeCCCCCCCCcCc
Confidence            98765221110000      001113567778888888876     4589999999999999997

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1e-48  Score=407.34  Aligned_cols=332  Identities=26%  Similarity=0.402  Sum_probs=242.9

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHh--hcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSL--YDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~--~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~  131 (495)
                      ....++++++++|||||||.||||+++|.+++......  ...+.....|++++.+|++|.+++...+..+..|++.+..
T Consensus       164 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~  243 (534)
T d1v25a_         164 VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP  243 (534)
T ss_dssp             CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEEC
T ss_pred             cccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeeec
Confidence            45678899999999999999999999999997655443  3345567889999999999999998888887777777663


Q ss_pred             ----chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCch
Q 011011          132 ----AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPS  207 (495)
Q Consensus       132 ----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  207 (495)
                          ++..+...+.++++|.+.++|+++..+.......                                          
T Consensus       244 ~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~------------------------------------------  281 (534)
T d1v25a_         244 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST------------------------------------------  281 (534)
T ss_dssp             TTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHH------------------------------------------
T ss_pred             cccccccccchhhhhccccccccCchhhhhhhhhhccc------------------------------------------
Confidence                5788999999999999999999998776643221                                          


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceec
Q 011011          208 YLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                       ...++.+|.+++||++++....+++++++.++++.||+||++..+..
T Consensus       282 ---------------------------------~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~i~~~yG~te~~~~~~~  328 (534)
T d1v25a_         282 ---------------------------------GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQ  328 (534)
T ss_dssp             ---------------------------------TCCCSSCCEEEECSSCCCHHHHHHHHHTTCEEEEEEECGGGSSEEEE
T ss_pred             ---------------------------------cccccceeEEEEecCCCCHHHHHHHHHhCCeeeeeccccccccceee
Confidence                                             12345569999999999999877788889999999999999988765


Q ss_pred             cCCCC-----------CCccccccCcCCcEEEEEeCCCCCcCCC--CCccEEEEccCCcchhccCCchhhhhccCCCCcc
Q 011011          288 RRPTC-----------NVLGSVGHPINHTEIKIVDAETNEVLPA--GSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWL  354 (495)
Q Consensus       288 ~~~~~-----------~~~~~~G~p~~~~~v~i~d~~~~~~~~~--g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~  354 (495)
                      .....           ...+++|+|++|++++|+|++ ++.++.  |+.|||+|+||+++.||+++++.|++.|..||||
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~-~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~  407 (534)
T d1v25a_         329 NFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF  407 (534)
T ss_dssp             CCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTT-SCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCE
T ss_pred             cccCccccccCccccccccccceeccCCcEEEEECCC-CCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCC
Confidence            44322           124689999999999999965 666655  6799999999999999999999999999999999


Q ss_pred             ccCceeeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEec
Q 011011          355 NTGDIGWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVP  430 (495)
Q Consensus       355 ~TGDl~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~  430 (495)
                      +|||+|++++          +|.+++.||+||+|+. +|++|+|.+||++|.+||.|.||+|++.+++    .+.|+|++
T Consensus       408 ~TGDlg~~~~----------~G~l~~~GR~~~~i~~-~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~  476 (534)
T d1v25a_         408 RTGDIAVWDE----------EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVP  476 (534)
T ss_dssp             EEEEEEEECT----------TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC--
T ss_pred             ccCceeEECC----------CccEEEecccccEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEe
Confidence            9999999998          8999999999999997 8999999999999999999999999987643    46677777


Q ss_pred             ChHHHHHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          431 DKEEVLMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                      +.+                ....++.++..+++.|+.|+     .++.|.++++.|.+.+||+
T Consensus       477 ~~~----------------~~~~~~~~~~~~~~~l~~~~-----~P~~i~~~~~lP~t~~GKi  518 (534)
T d1v25a_         477 RGE----------------KPTPEELNEHLLKAGFAKWQ-----LPDAYVFAEEIPRTSAGKF  518 (534)
T ss_dssp             ---------------------------------CCCTTT-----SCSBC--------------
T ss_pred             CCC----------------CCCHHHHHHHHHHhcCCcCC-----CccEEEEECCCCCCCCccc
Confidence            543                11222233334566666665     5588999999999999986

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=1.3e-44  Score=374.28  Aligned_cols=322  Identities=22%  Similarity=0.239  Sum_probs=265.4

Q ss_pred             CCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHhHhhcCceEEecc--
Q 011011           55 TIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYFIFSRGIELMYTA--  132 (495)
Q Consensus        55 ~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~~G~~~~~~~--  132 (495)
                      +..++|+++|+|||||||.||+|++||+++..........+....+|++++.+|++|.+++...+..+..|+++++..  
T Consensus       162 p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~  241 (514)
T d1amua_         162 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKD  241 (514)
T ss_dssp             CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHH
T ss_pred             CCCcccceEEEEccCCCCCcccccccccccccccccccccccccccccccceeccccccccccccccccccccccccccc
Confidence            456899999999999999999999999999999888888889999999999999999999988888888888887743  


Q ss_pred             ----hHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          133 ----VRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       133 ----~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                          ....+..+....++.+...|.......                                                 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  272 (514)
T d1amua_         242 TINDFVKFEQYINQKEITVITLPPTYVVHLD-------------------------------------------------  272 (514)
T ss_dssp             HHTCHHHHHHHHHHTTCCEEEECHHHHTTSC-------------------------------------------------
T ss_pred             cccchhhhhhhhhhhhcccccceeeeccccc-------------------------------------------------
Confidence                455677888888888888775432100                                                 


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhHHHHHHHcCCeeeeccCcccCccceecc
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHIDLFYEAIGVKVQVGYGLTESSPVIAAR  288 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~  288 (495)
                                                      ...+..++.+.+||+++++++..... .+..+++.||+||++.+++..
T Consensus       273 --------------------------------~~~~~~l~~~~~~G~~~~~~~~~~~~-~~~~~~~~yG~tE~~~~~~~~  319 (514)
T d1amua_         273 --------------------------------PERILSIQTLITAGSATSPSLVNKWK-EKVTYINAYGPTETTICATTW  319 (514)
T ss_dssp             --------------------------------TTTCCSCSEEEEESSCCCHHHHHHHT-TTSEEEEEECCGGGSSCSEEE
T ss_pred             --------------------------------ccccccccEEEEecccCCHHHhhhhc-cceeEEEeeccccCceeeeec
Confidence                                            02234458899999999988743322 267899999999998877654


Q ss_pred             CCCC---CCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhcc------CCCCccccCce
Q 011011          289 RPTC---NVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQAL------DEDGWLNTGDI  359 (495)
Q Consensus       289 ~~~~---~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~------~~~~~~~TGDl  359 (495)
                      ....   ...++.+.+.++..+.+.| +.+++++.|+.|||+|+||+++.||+++++.+.+.|      +.+|||+|||+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~  398 (514)
T d1amua_         320 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQ  398 (514)
T ss_dssp             ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEE
T ss_pred             cccccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCE
Confidence            4333   3345678899999999999 668999999999999999999999999999998877      34789999999


Q ss_pred             eeeccCCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHH
Q 011011          360 GWIAPHHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEV  435 (495)
Q Consensus       360 ~~~~~~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~  435 (495)
                      |++++          +|+|++.||+||+|++ +|++|+|.+||++|.+||.|.+|+|++.++    +.+.|+|++++   
T Consensus       399 g~~d~----------~G~l~i~GR~~d~i~~-~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~---  464 (514)
T d1amua_         399 ARWLS----------DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK---  464 (514)
T ss_dssp             EEECT----------TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS---
T ss_pred             EEECC----------CCcEEEEecccCEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCC---
Confidence            99999          8999999999999998 899999999999999999999999999764    35778888763   


Q ss_pred             HHHHHHcCCCcCCccccChHHHHHHHHHHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          436 LMAAKRLSIVHADASELSKEKTISLLYGELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                                     ..+.++++++++++|+.++     .++.|.++++.+.+.+||+
T Consensus       465 ---------------~~~~~~l~~~~~~~l~~~~-----~p~~i~~v~~lP~t~~GKi  502 (514)
T d1amua_         465 ---------------HIPLEQLRQFSSEELPTYM-----IPSYFIQLDKMPLTSNGKI  502 (514)
T ss_dssp             ---------------CCCHHHHHHHHHHHSCGGG-----SCSEEEECSSCCBCTTSSB
T ss_pred             ---------------CCCHHHHHHHHHhhCCccc-----CceEEEEeCCCCCCCCcCh
Confidence                           3467889999999998886     4588999999999999986

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=5.6e-44  Score=371.18  Aligned_cols=332  Identities=19%  Similarity=0.281  Sum_probs=276.0

Q ss_pred             CCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccCCCCCcEEEEECChhhHHHHHHhHh--HhhcCceEEec
Q 011011           54 ETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVPAENGDKFLSMLPPWHVYERACGYF--IFSRGIELMYT  131 (495)
Q Consensus        54 ~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~--~~~~G~~~~~~  131 (495)
                      ....++|+++|+|||||||.||||++||+++...+......+++.++|++++.+|++|.+++...+.  .+..|.+.+..
T Consensus       177 ~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~  256 (536)
T d1mdba_         177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS  256 (536)
T ss_dssp             CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred             CccCccchHHhhhcccccccceecccccccccccccccccccccccccccccccccccccceeecccccccccccccccc
Confidence            4567899999999999999999999999999999888888889999999999999999999765333  34456666653


Q ss_pred             ---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCchh
Q 011011          132 ---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQPSY  208 (495)
Q Consensus       132 ---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  208 (495)
                         ++..++..+++++++.+..+|..+..+.......                                           
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  293 (536)
T d1mdba_         257 PSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------------------------------  293 (536)
T ss_dssp             SSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------------------------
T ss_pred             CCCCHHHHHHHHhhhccccccccchhhhhhhhhcccc-------------------------------------------
Confidence               6888999999999999999999887765542221                                           


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccceec
Q 011011          209 LVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVIAA  287 (495)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~~~  287 (495)
                                                      ...+..++.+++||+++++.. ..+.+.++......|+.+|.+.....
T Consensus       294 --------------------------------~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (536)
T d1mdba_         294 --------------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTR  341 (536)
T ss_dssp             --------------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECC
T ss_pred             --------------------------------ccccCcceeEEEeccccccccccchhhccCceeeeccccccccccccc
Confidence                                            122334589999999999887 55556789999999999887655443


Q ss_pred             cCC-CCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEccCCcchhccCCchhhhhccCCCCccccCceeeeccCC
Q 011011          288 RRP-TCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRGSQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAPHH  366 (495)
Q Consensus       288 ~~~-~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~~  366 (495)
                      ... .....+++|.|+++....+++.+.+++++.|+.|||+++|+.++.||+++++.+...+..++||+|||++++++  
T Consensus       342 ~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~--  419 (536)
T d1mdba_         342 LDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR--  419 (536)
T ss_dssp             TTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT--
T ss_pred             cccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccCccccccC--
Confidence            322 22345788999887666666668899999999999999999999999999999999999999999999999999  


Q ss_pred             CCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCC----CeeEEEEecChHHHHHHHHHc
Q 011011          367 SRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQ----RRPGAIIVPDKEEVLMAAKRL  442 (495)
Q Consensus       367 ~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~----~~~~a~vv~~~~~~~~~~~~~  442 (495)
                              ||++++.||+||+|++ +|++|+|.+||++|.+||.|.+|+|++.++    +.+.|+|++++          
T Consensus       420 --------dG~l~~~GR~~d~i~~-~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~----------  480 (536)
T d1mdba_         420 --------DGYIVVEGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD----------  480 (536)
T ss_dssp             --------TSCEEEEEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS----------
T ss_pred             --------CCceecCCCcceEEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC----------
Confidence                    8999999999999997 899999999999999999999999998754    34678888764          


Q ss_pred             CCCcCCccccChHHHHHHHHHH-HHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          443 SIVHADASELSKEKTISLLYGE-LRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       443 ~~~~~~~~~~~~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                             ...+.++++++++++ |+.|+     .++.|.++++.|.+.+||+
T Consensus       481 -------~~~~~~~l~~~l~~~~l~~~~-----~P~~i~~v~~lP~t~~GKi  520 (536)
T d1mdba_         481 -------EAPKAAELKAFLRERGLAAYK-----IPDRVEFVESFPQTGVGKV  520 (536)
T ss_dssp             -------SCCCHHHHHHHHHHTTCCGGG-----SCSEEEECSSCCBCTTSCB
T ss_pred             -------CCCCHHHHHHHHHhcCCCcCc-----CccEEEEECCCCcCCCcCc
Confidence                   234678899999875 77776     4588999999999999996

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=6.6e-40  Score=336.80  Aligned_cols=334  Identities=20%  Similarity=0.276  Sum_probs=265.6

Q ss_pred             cCCCCCCCEEEEEeCCCCCCCchhhhhchHHHHHHHHHhhcccC--CCCCcEEEEECChhhHHHHHHh-HhHhhcCceEE
Q 011011           53 YETIGSDDIATYVYTSGTTGNPKGVMLTHKNLLHQIRSLYDIVP--AENGDKFLSMLPPWHVYERACG-YFIFSRGIELM  129 (495)
Q Consensus        53 ~~~~~~~d~a~i~~TSGTTG~PK~v~~th~~l~~~~~~~~~~~~--~~~~d~~l~~~p~~h~~~~~~~-~~~~~~G~~~~  129 (495)
                      ....+++++++++|||||||.||+|+++|+++..........+.  ....++.++.+|++|.++.... +.+...+..++
T Consensus       147 ~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  226 (503)
T d3cw9a1         147 DPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYV  226 (503)
T ss_dssp             CCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEE
T ss_pred             cccchhhhhhhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccc
Confidence            34567899999999999999999999999999887777655443  4556899999999888887764 33455555555


Q ss_pred             ec---chHhHHHHHhHhCCcEEEeCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhHHHHHHHHHhhccccccCCCCc
Q 011011          130 YT---AVRNLKDDLQRYQPHYMISVPLVYETLYSGIQKQIFTSSAARRVVARALIRISFAYTAFKRIYEGFCLTRNQKQP  206 (495)
Q Consensus       130 ~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  206 (495)
                      ..   ++..+...+..++++.+..+|..+..+.........                                       
T Consensus       227 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  267 (503)
T d3cw9a1         227 VVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS---------------------------------------  267 (503)
T ss_dssp             ECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCT---------------------------------------
T ss_pred             cccccChHHhhhhhhhceeeccccccccccccccccccccc---------------------------------------
Confidence            53   688899999999999999999988766543222100                                       


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhcCCceEEEeccCCCChhH-HHHHHHcCCeeeeccCcccCccce
Q 011011          207 SYLVALIDWLWARIICAILWPLHLLAEKLVYKKIQSAIGISKAGVSGGGSLPMHI-DLFYEAIGVKVQVGYGLTESSPVI  285 (495)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~gg~~l~~~~-~~~~~~~g~~v~~~YG~TE~~~~~  285 (495)
                                                        ...++.+|.+++||++++++. ..+.+.++..+.+.||+||++..+
T Consensus       268 ----------------------------------~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~  313 (503)
T d3cw9a1         268 ----------------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSL  313 (503)
T ss_dssp             ----------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEE
T ss_pred             ----------------------------------cccccceEEEEeccccccccccccccccccccccccccccccceee
Confidence                                              012345699999999999987 445556788999999999998877


Q ss_pred             eccCCCCCCccccccCcCCcEEEEEeCCCCCcCCCCCccEEEEcc-CCcchhccCCchhhhhccCCCCccccCceeeecc
Q 011011          286 AARRPTCNVLGSVGHPINHTEIKIVDAETNEVLPAGSKGIVKVRG-SQVMQGYFKNPSATKQALDEDGWLNTGDIGWIAP  364 (495)
Q Consensus       286 ~~~~~~~~~~~~~G~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~~-p~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~  364 (495)
                      ...........+.+.+.+.....+.+ +.++.++.|+.|++.+.+ +....+|+++++.|++.| .+|||+|||+|++++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~  391 (503)
T d3cw9a1         314 YMRQPKTGTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTP  391 (503)
T ss_dssp             EEESCSSSSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECT
T ss_pred             eeccccccccccccccccceeeeeec-ccCcccCCCccccccccccccccccccCChhhhHHHh-cCCceeccccccccc
Confidence            76655554444555555544444444 678899999999888765 466778999999999988 589999999999998


Q ss_pred             CCCCCCccccCCeEEEEccccceEEeCCceeecchHHHHHHhcCcccceEEEEecCCC----eeEEEEecChHHHHHHHH
Q 011011          365 HHSRGRSRRCGGVLVLEGRAKDTIVLSTGENVEPLELEEAALRSSLIRQIVVIGQDQR----RPGAIIVPDKEEVLMAAK  440 (495)
Q Consensus       365 ~~~~~~~~~~~G~l~i~GR~~d~i~~~~G~~v~~~~IE~~l~~~p~V~~~~vvg~~~~----~~~a~vv~~~~~~~~~~~  440 (495)
                                ||+|+++||+||+|++ +|++|+|.+||++|.+||.|.+|+|+|.+++    .+.|+|+++.+       
T Consensus       392 ----------dG~l~~~GR~~d~ik~-~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~-------  453 (503)
T d3cw9a1         392 ----------EGTVRILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLG-------  453 (503)
T ss_dssp             ----------TSCEEEEEESSCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTT-------
T ss_pred             ----------CCeEEeCCCcCCeEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCC-------
Confidence                      8999999999999998 8999999999999999999999999997543    57889988754       


Q ss_pred             HcCCCcCCccccChHHHHHHHH-HHHHhHhccCCCccccEEEecCCCCCCCCee
Q 011011          441 RLSIVHADASELSKEKTISLLY-GELRKWTSKCSFQIGPIHVVDEPFTVNFLCL  493 (495)
Q Consensus       441 ~~~~~~~~~~~~~~~~l~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  493 (495)
                               ...+.++++++++ ++|+.|+     +++.|.++++.|.+.+||+
T Consensus       454 ---------~~~~~~~l~~~~~~~~l~~~~-----~P~~i~~v~~~P~t~~GKi  493 (503)
T d3cw9a1         454 ---------ETLSADALDTFCRSSELADFK-----RPKRYFILDQLPKNALNKV  493 (503)
T ss_dssp             ---------CCCCHHHHHHHHHHSSSCGGG-----SCSEEEECSCCCBCTTSCB
T ss_pred             ---------CCCCHHHHHHHHHhcCCCCCC-----CccEEEEECCCCcCCCcCc
Confidence                     5567788998885 4577776     5588999999999999996