Citrus Sinensis ID: 011028

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
MDFELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVDDKDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSKQEIQ
ccccccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccccccccHHHHccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHHcccccccccEEccccccccEEccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEccccccEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHcccccccEEEEEEcccccccccccccccEEcHHHHHHHHcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHccccccEEEccccHHHHHHHcccccccccccccccccccccccccccccccccccccccc
ccHHHHccHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHccccHHHcccccccccccEEEEEEccccccccHHHHHHHHHcccEEEEEccccccccccccEEEEEEEccccHHHHHHHHHHHccccccEEEEEEcHHHHHHHHHHHHHHHHcccccccccHcccccccccccccccccccccccccEcccccccccccEEccccccccccEEEEEEccccccHHHHHHccccccEEEEcccccccEcccccHHHHHHHHHHHHHHHHHccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEEcccHHHHHccccccEEEEEEcccccccccccccccccccHHHHHHccccccccccccccHHHcccccccccccccccccEEEEEcEEEccccccccccccccccccHccccccHHHEEEEcccccEEEEEcccHHHHHHHHcccccccccccccccHHHEcccccEEEEcccccccHccc
MDFELNYEIASTADFIYSRKFTRValqfpdnllKDSIRIVRALRAKLGslrssdgergvddkdigLFVMADttygsccvdevgashvdadcvihyghtclsptstlpaffvfgkasintSNCIENLSkhaltngkPILVLYGLEYAHAIPHIREAVKVASssygsglkleiNFADVmctvitpskdhkslcgpaggctrhtigglvwnipdrkKMEEHLLFWIGSDNSAFANVVLTFNGceivrydateerlltdvsqplKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLvmgkpnpaklanfpecdvfinVSCAQTalldskeflapvitpfEAMLAfgrgtqwtGAYVMEFRDlmssspvegsdQAEEARFSFlkggyvedvaqpetengeeEKEGALALANAAEKALQLRdrsldpivkgtaksGAEYFVSrsyhglemqcnssspepyaigrsgkasgyddekskqeiq
MDFELNYEIASTADFIYSRKFTRVALQfpdnllkdSIRIVRALRaklgslrssdgergvddkDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRydateerlltdvsqplkiLKRRYYLVEkakdaniigVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGrsgkasgyddekskqeiq
MDFELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVDDKDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETengeeekegalalanaaekaLQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSKQEIQ
****LNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGS*********VDDKDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDL******************FL***Y************************************************AEYFVSRSYH***********************************
MDFELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVDDKDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMC******************CTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSS***************F*K*************************************************SGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKA*************
MDFELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVDDKDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMS***********EARFSFLKGGYVEDVAQ***********GALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRS****************
MDFELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSD*ERGVDDKDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVED***************ALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDE*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDFELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVDDKDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNSSSPEPYAIGRSGKASGYDDEKSKQEIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query495 2.2.26 [Sep-21-2011]
A4QN59498 Diphthamide biosynthesis yes no 0.890 0.885 0.320 2e-72
A7SKJ3531 Diphthamide biosynthesis N/A no 0.915 0.853 0.318 1e-69
Q10206503 Diphthamide biosynthesis yes no 0.907 0.892 0.322 8e-69
Q5ZKI2477 Diphthamide biosynthesis yes no 0.886 0.920 0.343 4e-67
Q6DE00478 Diphthamide biosynthesis N/A no 0.874 0.905 0.317 3e-66
Q4WN99565 Diphthamide biosynthesis yes no 0.925 0.810 0.289 2e-50
P0CN20515 Diphthamide biosynthesis yes no 0.929 0.893 0.270 3e-50
P0CN21515 Diphthamide biosynthesis N/A no 0.929 0.893 0.270 3e-50
Q5B2Q1582 Diphthamide biosynthesis yes no 0.785 0.668 0.291 1e-47
Q59SJ9529 Diphthamide biosynthesis N/A no 0.884 0.827 0.288 2e-47
>sp|A4QN59|DPH2_DANRE Diphthamide biosynthesis protein 2 OS=Danio rerio GN=dph2 PE=2 SV=1 Back     alignment and function desciption
 Score =  273 bits (699), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 162/506 (32%), Positives = 249/506 (49%), Gaps = 65/506 (12%)

Query: 2   DFELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVDD 61
           D  L Y+   T  FI S  F +VALQFPD LL D++R+   +                D 
Sbjct: 28  DLLLLYQTPETCRFITSNHFKKVALQFPDELLPDAVRVSAEIE---------------DK 72

Query: 62  KDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSN 121
                +++ DT+YGSCCVDEV A HV ADC++HYG +CLSP   LP  +VFGK  I+   
Sbjct: 73  TKAKTYILGDTSYGSCCVDEVAAEHVGADCIVHYGSSCLSPCRRLPLLYVFGKRPIDVHQ 132

Query: 122 CIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVI 181
           C  +  +        I+VL+ + Y+HAI  +R  +                  DV   V+
Sbjct: 133 CASSFKELYPNLQSHIIVLFDVTYSHAIDDLRTLL-----------------CDVYPNVV 175

Query: 182 TPSKDHKSLCGP---AGGCT--RHTIGGLVWN------IPDRKKMEEHLLFWIGSDNSAF 230
                    CG       C   +    G+++       I + + + ++ +F+IG +    
Sbjct: 176 VSRLKTDHSCGAELIQDSCVDLQSNDDGVIFKFGRQFRIKEGQTVNDYSIFYIGQEGLTL 235

Query: 231 ANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAG 290
            N ++++N C    ++        +  Q  K L +RYY +E+AKDA+++G+LVGTLGVA 
Sbjct: 236 TNFMMSWNNCVFSSFNPETSTGRVESVQINKALMKRYYAIERAKDASVVGILVGTLGVAN 295

Query: 291 YLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAP 350
           YL +I Q+K+ I +AGKK+Y   MGK N  KLANF E D+++ V+C + +LLDS EF  P
Sbjct: 296 YLIIIEQLKDTIQRAGKKSYMFAMGKINVPKLANFLEIDIYVLVACPENSLLDSSEFYRP 355

Query: 351 VITPFEAMLAFGRGTQWTGAYVMEFRDLMSS--------SPVEGSDQAEEARFSFLKGGY 402
           V+TPFE  LA  +  +WTG YV +FR+L+           P + + + E    S + G  
Sbjct: 356 VVTPFEMELACNKHREWTGEYVTDFRELLPGGSSHVGFPEPSQSATEEETTDVSLITGAL 415

Query: 403 VEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGL 462
                +  + N  E       + N+   +L LR+++L         + A +   RS+ GL
Sbjct: 416 -----RSCSTNSSE------MMHNSETSSLVLRNQTL---TVANTNAAASFLAGRSWQGL 461

Query: 463 EMQCNSSSPEPYAIGRSGKASGYDDE 488
           E +   +       G+ G A  Y++E
Sbjct: 462 EPKLGQTPVVKAVKGQRGIAIAYEEE 487
Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2.
Danio rerio (taxid: 7955)
>sp|A7SKJ3|DPH2_NEMVE Diphthamide biosynthesis protein 2 OS=Nematostella vectensis GN=dph2 PE=3 SV=1 Back     alignment and function description
>sp|Q10206|DPH2_SCHPO Diphthamide biosynthesis protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph2 PE=3 SV=1 Back     alignment and function description
>sp|Q5ZKI2|DPH2_CHICK Diphthamide biosynthesis protein 2 OS=Gallus gallus GN=DPH2 PE=2 SV=1 Back     alignment and function description
>sp|Q6DE00|DPH2_XENLA Diphthamide biosynthesis protein 2 OS=Xenopus laevis GN=dph2 PE=2 SV=1 Back     alignment and function description
>sp|Q4WN99|DPH2_ASPFU Diphthamide biosynthesis protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dph2 PE=3 SV=1 Back     alignment and function description
>sp|P0CN20|DPH2_CRYNJ Diphthamide biosynthesis protein 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DPH2 PE=3 SV=1 Back     alignment and function description
>sp|P0CN21|DPH2_CRYNB Diphthamide biosynthesis protein 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=DPH2 PE=3 SV=1 Back     alignment and function description
>sp|Q5B2Q1|DPH2_EMENI Diphthamide biosynthesis protein 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dph2 PE=3 SV=1 Back     alignment and function description
>sp|Q59SJ9|DPH2_CANAL Diphthamide biosynthesis protein 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=DPH2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query495
359478316506 PREDICTED: diphthamide biosynthesis prot 0.991 0.970 0.699 0.0
255579442499 diphteria toxin resistance protein 2, dp 0.977 0.969 0.684 0.0
224068785496 predicted protein [Populus trichocarpa] 0.971 0.969 0.662 0.0
356555374485 PREDICTED: diphthamide biosynthesis prot 0.959 0.979 0.643 0.0
449468836500 PREDICTED: diphthamide biosynthesis prot 0.983 0.974 0.623 0.0
357436535 612 Diphthamide biosynthesis protein 2 conta 0.985 0.797 0.634 0.0
297820792493 diphthamide synthesis DPH2 family protei 0.959 0.963 0.593 1e-172
15231723491 diphthamide synthesis DPH2 family protei 0.955 0.963 0.583 1e-168
356547432456 PREDICTED: diphthamide biosynthesis prot 0.921 1.0 0.607 1e-166
62733967506 diphthamide biosynthesis protein 2 [Oryz 0.955 0.934 0.516 1e-150
>gi|359478316|ref|XP_002273627.2| PREDICTED: diphthamide biosynthesis protein 2-like [Vitis vinifera] gi|296084273|emb|CBI24661.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/509 (69%), Positives = 414/509 (81%), Gaps = 18/509 (3%)

Query: 1   MDFELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVD 60
           M+ E NYEIA TADFI SR FTRVALQFPD LLKD+ R+V+ALR +L S   S+   G D
Sbjct: 1   MELESNYEIALTADFIRSRNFTRVALQFPDELLKDATRVVKALRDRLES--PSESGSG-D 57

Query: 61  DKDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTS 120
            K++GLFVMADTTYGSCCVDEVGASH++ADCV+HYGHTCLSPTS LPAFFVFGKA I+ S
Sbjct: 58  GKEVGLFVMADTTYGSCCVDEVGASHINADCVVHYGHTCLSPTSNLPAFFVFGKAPISIS 117

Query: 121 NCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSY-GSGLKLEINFADVMCT 179
           NC ENLS +ALT GK I+VL+GLEY+HAI  I+EA+ + SS   GS   LE +FA+VMC+
Sbjct: 118 NCAENLSTYALTQGKHIMVLFGLEYSHAIEMIKEALMLESSKLSGSTSNLEFHFAEVMCS 177

Query: 180 VITPSKDHKSLCGPAGGC--------------TRHTIGGLVWNIPDRKKMEEHLLFWIGS 225
           V+ PSKD  +  G  G                TR++IGGL WN+P+  +ME++LL WIG+
Sbjct: 178 VMNPSKDCTTSNGHLGSVGSFTANEGFGKATGTRYSIGGLAWNLPEGHRMEDYLLVWIGA 237

Query: 226 DNSAFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGT 285
           DNSAFANVVLTFNGC+IVRYDA + RL+TD+SQ  +ILKRRYYLVEKAKD+NIIG+LVGT
Sbjct: 238 DNSAFANVVLTFNGCDIVRYDAVDNRLVTDLSQQRRILKRRYYLVEKAKDSNIIGLLVGT 297

Query: 286 LGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSK 345
           LGVAGYLHMI QMKELI  AGKKAYTLVMG+PNPAKLANFPECDVFI VSCAQTALLDSK
Sbjct: 298 LGVAGYLHMIRQMKELIAAAGKKAYTLVMGRPNPAKLANFPECDVFIYVSCAQTALLDSK 357

Query: 346 EFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSPVEGSDQAEEARFSFLKGGYVED 405
           EFLAPVITPFEAMLAF RG+QWTGAYVMEFRDL+SSSPVE  +Q+EEARFSFL+GGYVED
Sbjct: 358 EFLAPVITPFEAMLAFNRGSQWTGAYVMEFRDLISSSPVEVRNQSEEARFSFLQGGYVED 417

Query: 406 VAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQ 465
               ETE+ EE+++GALALA A EKALQ+RD+  + ++KGTAKSG E+F +RSYHGLEM 
Sbjct: 418 FDLKETEDAEEDEDGALALAYATEKALQVRDKHPNSLIKGTAKSGGEFFAARSYHGLEMH 477

Query: 466 CNSSSPEPYAIGRSGKASGYDDEKSKQEI 494
            N SSPEPY IGR GKASGY+ EK  +  
Sbjct: 478 SNDSSPEPYLIGRVGKASGYEGEKGNENF 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579442|ref|XP_002530564.1| diphteria toxin resistance protein 2, dph2, putative [Ricinus communis] gi|223529863|gb|EEF31794.1| diphteria toxin resistance protein 2, dph2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224068785|ref|XP_002326199.1| predicted protein [Populus trichocarpa] gi|222833392|gb|EEE71869.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555374|ref|XP_003546007.1| PREDICTED: diphthamide biosynthesis protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449468836|ref|XP_004152127.1| PREDICTED: diphthamide biosynthesis protein 2-like [Cucumis sativus] gi|449484704|ref|XP_004156957.1| PREDICTED: diphthamide biosynthesis protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357436535|ref|XP_003588543.1| Diphthamide biosynthesis protein 2 containing protein expressed [Medicago truncatula] gi|355477591|gb|AES58794.1| Diphthamide biosynthesis protein 2 containing protein expressed [Medicago truncatula] Back     alignment and taxonomy information
>gi|297820792|ref|XP_002878279.1| diphthamide synthesis DPH2 family protein [Arabidopsis lyrata subsp. lyrata] gi|297324117|gb|EFH54538.1| diphthamide synthesis DPH2 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15231723|ref|NP_191522.1| diphthamide synthesis DPH2 family protein [Arabidopsis thaliana] gi|6996299|emb|CAB75460.1| putative protein [Arabidopsis thaliana] gi|19715609|gb|AAL91627.1| AT3g59630/T16L24_180 [Arabidopsis thaliana] gi|53749154|gb|AAU90062.1| At3g59630 [Arabidopsis thaliana] gi|332646426|gb|AEE79947.1| diphthamide synthesis DPH2 family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356547432|ref|XP_003542116.1| PREDICTED: diphthamide biosynthesis protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|62733967|gb|AAX96076.1| diphthamide biosynthesis protein 2 [Oryza sativa Japonica Group] gi|77549704|gb|ABA92501.1| diphthamide biosynthesis protein 2 containing protein, expressed [Oryza sativa Japonica Group] gi|125576808|gb|EAZ18030.1| hypothetical protein OsJ_33577 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query495
TAIR|locus:2097513491 AT3G59630 "AT3G59630" [Arabido 0.955 0.963 0.563 3.5e-146
UNIPROTKB|F1N8G4477 DPH2 "Diphthamide biosynthesis 0.337 0.350 0.443 1.5e-68
UNIPROTKB|F1P2X6481 DPH2 "Diphthamide biosynthesis 0.337 0.347 0.443 1.5e-68
UNIPROTKB|Q5ZKI2477 DPH2 "Diphthamide biosynthesis 0.337 0.350 0.443 1.5e-68
POMBASE|SPBC17D1.02503 dph2 "diphthamide biosynthesis 0.593 0.584 0.310 2.3e-66
ZFIN|ZDB-GENE-030219-100498 dph2 "DPH2 homolog (S. cerevis 0.836 0.831 0.342 8.1e-60
DICTYBASE|DDB_G0295687588 dph2 "diphthamide biosynthesis 0.577 0.486 0.307 4.1e-50
UNIPROTKB|G4MYQ5601 MGG_12288 "Diphthamide biosynt 0.581 0.479 0.328 2.9e-44
CGD|CAL0005815529 orf19.4173 [Candida albicans ( 0.6 0.561 0.289 1.4e-42
CGD|CAL0000723529 orf19.5678 [Candida albicans ( 0.6 0.561 0.289 1.4e-42
TAIR|locus:2097513 AT3G59630 "AT3G59630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
 Identities = 284/504 (56%), Positives = 363/504 (72%)

Query:     1 MDFELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVD 60
             ++FE  YEI  TA+FI S+ FTR+ALQFPD LLKDS ++V AL++K          R + 
Sbjct:     3 LEFESKYEINRTAEFIISKSFTRIALQFPDELLKDSTKVVSALKSKT---------RLLT 53

Query:    61 DKDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTS 120
             D+++  FVMADTTYGSCC+DEVGA H+D++CV+HYG TCLSPTS LPAFFVFGKASIN S
Sbjct:    54 DREVRFFVMADTTYGSCCIDEVGALHIDSECVVHYGQTCLSPTSVLPAFFVFGKASINVS 113

Query:   121 NCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTV 180
             +C+++L  +A  + KPI++LYGLEYAH IP IRE + ++ +        +++ A+V+C+ 
Sbjct:   114 SCVKHLIDYASKSDKPIMILYGLEYAHVIPQIREELGLSKTDS------QLSVANVLCSF 167

Query:   181 ITPSKD-HKSLCGPA-----------GGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNS 228
             I+PSKD  +S+  P                 + +GGL W++P+  K+E++LLFWIGSD+S
Sbjct:   168 ISPSKDPRESMEHPRPYSESDSSDSLSSSRSYRLGGLTWDLPEGSKIEDYLLFWIGSDSS 227

Query:   229 AFANVVLTFNGCEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGV 288
             AFANVVLTFNGC+IVRYDA E+ L+T+  Q  +ILKRRYYLVEKAKDANIIG+LVGTLGV
Sbjct:   228 AFANVVLTFNGCDIVRYDAEEDSLVTEFYQQRRILKRRYYLVEKAKDANIIGILVGTLGV 287

Query:   289 AGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFL 348
             AGYLHMIH M+ LI+ AGKK+Y L MG+PNPAKLANFPECDVFI +SCAQTALLDSKEF+
Sbjct:   288 AGYLHMIHHMQALISAAGKKSYILAMGRPNPAKLANFPECDVFIYISCAQTALLDSKEFM 347

Query:   349 APVITPFEAMLAFGRGTQWTGAYVMEFRDLMSS--SPVEGSDQAEEARFSFLKGGYVED- 405
             +PVITPFEA LAF RG++WTGAY+M F+D+++S  S  E    +EE RFSF +GGYVED 
Sbjct:   348 SPVITPFEANLAFSRGSEWTGAYLMHFQDVINSVKSESEAHIGSEEPRFSFFQGGYVEDH 407

Query:   406 VAQPETXXXXXXXXXXXXXXXXXXXXLQLRDRSLDPIVKGTA-KSGAEYFVSRSYHGLEM 464
                 +                     LQLR    + + K TA KSG EYF++R Y GLE+
Sbjct:   408 KTNDQAKNGEEDTGETMTLVQAAEKALQLRGNDHNSLTKQTAAKSGPEYFLNRVYRGLEI 467

Query:   465 QCNSSSPEPYAIGRSGKASGYDDE 488
                ++ PEPY +GRSGKASGY  E
Sbjct:   468 NSENTLPEPYIVGRSGKASGYKHE 491
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA
GO:0006865 "amino acid transport" evidence=RCA
GO:0015824 "proline transport" evidence=RCA
UNIPROTKB|F1N8G4 DPH2 "Diphthamide biosynthesis protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2X6 DPH2 "Diphthamide biosynthesis protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKI2 DPH2 "Diphthamide biosynthesis protein 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
POMBASE|SPBC17D1.02 dph2 "diphthamide biosynthesis protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030219-100 dph2 "DPH2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0295687 dph2 "diphthamide biosynthesis protein 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4MYQ5 MGG_12288 "Diphthamide biosynthesis protein 2" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
CGD|CAL0005815 orf19.4173 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
CGD|CAL0000723 orf19.5678 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5ZKI2DPH2_CHICKNo assigned EC number0.34340.88680.9203yesno
Q10206DPH2_SCHPONo assigned EC number0.32270.90700.8926yesno
A4QN59DPH2_DANRENo assigned EC number0.32010.89090.8855yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034648001
SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (482 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00023426001
SubName- Full=Chromosome undetermined scaffold_30, whole genome shotgun sequence; (426 aa)
   •• ••0.593
GSVIVG00019376001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)
   •    0.480
GSVIVG00014439001
RecName- Full=Diphthine synthase; EC=2.1.1.98;; Required for the methylation step in diphthamid [...] (285 aa)
   •  • 0.463
GSVIVG00033408001
SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)
   •    0.460

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query495
TIGR00322319 TIGR00322, diphth2_R, diphthamide biosynthesis enz 1e-112
TIGR00272496 TIGR00272, DPH2, diphthamide biosynthesis protein 9e-81
pfam01866300 pfam01866, Diphthamide_syn, Putative diphthamide s 7e-66
COG1736347 COG1736, DPH2, Diphthamide synthase subunit DPH2 [ 1e-54
TIGR03682308 TIGR03682, arCOG04112, diphthamide biosynthesis en 1e-20
>gnl|CDD|232919 TIGR00322, diphth2_R, diphthamide biosynthesis enzyme Dph1/Dph2 domain Back     alignment and domain information 
 Score =  333 bits (856), Expect = e-112
 Identities = 126/362 (34%), Positives = 186/362 (51%), Gaps = 50/362 (13%)

Query: 6   NYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVDDKDIG 65
           N+EI  T + I  R   RVALQFPD LL D++ +   L                      
Sbjct: 2   NFEIDKTIEEIKKRGAKRVALQFPDGLLPDAVEVADILEK---------------APGAE 46

Query: 66  LFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSP-TSTLPAFFVFGKASINTSNCIE 124
           ++++ DTTYG+CCVD+V A H+ AD +IHYGH+CLSP TS +P  +VF    I+  + +E
Sbjct: 47  VYILGDTTYGACCVDDVAAKHLGADLIIHYGHSCLSPITSRIPVLYVFVYIPIDVEHLVE 106

Query: 125 NLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCTVITPS 184
            L ++    GK I ++  ++Y HA+  +++              LE    +    +I   
Sbjct: 107 ALKENLPDKGKRIALVTTVQYIHALDEVKK-------------ILEEAGYE--PVIIPQG 151

Query: 185 KDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEIVR 244
           K      G   GCT             R    + +L +IG        + L     ++  
Sbjct: 152 KPRVLSPGQVLGCTFP---------ALRNDEVDAVLIFIGDGRFHLLGLALATPKPKVYV 202

Query: 245 YD-----ATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMK 299
           YD      TEE    +     K+L+RRY L+EKAKDA  +G++VGTLG  G L +  ++K
Sbjct: 203 YDPYSGELTEEEYDAN-----KLLRRRYALIEKAKDAKKVGIIVGTLGGQGRLELAERLK 257

Query: 300 ELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAML 359
           EL+ KAGKKAY + +G+ NPAKLANFPE D F+  +C + ++ D K+F  PV+TP+E  +
Sbjct: 258 ELLKKAGKKAYLISVGEINPAKLANFPEIDAFVQTACPRLSIDDGKDFYKPVLTPYELEM 317

Query: 360 AF 361
           A 
Sbjct: 318 AL 319

Archaea and Eukaryotes, but not Eubacteria, share the property of having a covalently modified residue, 2'-[3-carboxamido-3-(trimethylammonio)propyl]histidine, as a part of a cytosolic protein. The modified His, termed diphthamide, is part of translation elongation factor EF-2 and is the site for ADP-ribosylation by diphtheria toxin. This model includes both Dph1 and Dph2 from Saccharomyces cerevisiae, although only Dph2 is found in the Archaea (see TIGR03682). Dph2 has been shown to act analogously to the radical SAM (rSAM) family (pfam04055), with 4Fe-4S-assisted cleavage of S-adenosylmethionine to create a free radical, but a different organic radical than in rSAM. Length = 319
>gnl|CDD|232900 TIGR00272, DPH2, diphthamide biosynthesis protein 2 Back     alignment and domain information
>gnl|CDD|216748 pfam01866, Diphthamide_syn, Putative diphthamide synthesis protein Back     alignment and domain information
>gnl|CDD|224650 COG1736, DPH2, Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234308 TIGR03682, arCOG04112, diphthamide biosynthesis enzyme Dph2 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 495
TIGR00272496 DPH2 diphthamide biosynthesis protein 2. This prot 100.0
KOG2648453 consensus Diphthamide biosynthesis protein [Transl 100.0
TIGR00322332 diphth2_R diphthamide biosynthesis protein 2-relat 100.0
TIGR03682308 arCOG04112 arCOG04112 universal archaeal diphthami 100.0
PF01866307 Diphthamide_syn: Putative diphthamide synthesis pr 100.0
COG1736347 DPH2 Diphthamide synthase subunit DPH2 [Translatio 100.0
PF08901157 DUF1847: Protein of unknown function (DUF1847); In 83.7
>TIGR00272 DPH2 diphthamide biosynthesis protein 2 Back     alignment and domain information 
Probab=100.00  E-value=2.1e-118  Score=950.29  Aligned_cols=454  Identities=31%  Similarity=0.515  Sum_probs=372.9

Q ss_pred             ccccccchHHHHHHHHhCCCcEEEEeCCccchhhHHHHHHHHHHhhccCCCCCCCCCCCCCceeEEEEcCCccccCccch
Q 011028            2 DFELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVDDKDIGLFVMADTTYGSCCVDE   81 (495)
Q Consensus         2 ~~~~~yei~~~i~~I~~~~~krVaLQfPD~Ll~~s~~V~~~L~~~l~~~~~~~~~~~~~~~~~~v~IlaDtsYGsCCVDe   81 (495)
                      +|+..|||++|++||++++++|||||||||||++|..|++.|++++..            .++++|||||||||||||||
T Consensus        32 ~~~~~yei~~~~~~I~~~~~krVaLQFPDgLL~~a~~va~~L~~~~~~------------~~~~v~IlaDtsYGaCCVDe   99 (496)
T TIGR00272        32 DISAYYEIEPTVGYIKQGNEYQVALQFPDDLLKDSSKVVRLLQSKFPH------------GKIKFWVLADTAYSSCCVDE   99 (496)
T ss_pred             HHHHHhhHHHHHHHHHHCCCCEEEEECChHHHHHHHHHHHHHHhhccc------------CCceEEEEeCCcccccccCH
Confidence            688999999999999999999999999999999999999999987521            25899999999999999999


Q ss_pred             hhhcccCCcEEEEecCCCCCCCCCCCeEEEccccCCChHHHHHHHhhhhcCCCCcEEEEecccchhhhHHHHHHHHhhcc
Q 011028           82 VGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASS  161 (495)
Q Consensus        82 vaA~hv~aD~iVHyGhsCls~~~~lpviYVf~~~~id~~~~~~~l~~~~~~~~~~v~l~~dvqy~~~l~~l~~~L~~~~~  161 (495)
                      +||+|++||+|||||||||+|++++||+|||++.++|+++|++.+++.+++..++|+|++|+||.|+++++++.|++...
T Consensus       100 vaA~hv~aD~iVHyGhsCLsp~~~lPviYVf~~~~~d~~~~~~~~~~~~~~~~~kV~l~~dvqy~~~~~~l~~~L~~~~~  179 (496)
T TIGR00272       100 VAAEHVHAEAVVHFGDACLSAIQNLPVVYVFGTPPIDLALVVENFQRAFPDLSSKICLMADAPFSKHQSQLYNILKEVLP  179 (496)
T ss_pred             HHHhhcCCCEEEEeCCCCCCCCCCCCEEEEeccCCCCHHHHHHHHHHhccccCCeEEEEEchhHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999987665545679999999999999999999986432


Q ss_pred             CCCCCcceeeeeeccceeeecCCCCCCCCCCCCCCcccccccCcccccCCcccccceEEEEEcCCCc-hhhhhhhhcC-C
Q 011028          162 SYGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNS-AFANVVLTFN-G  239 (495)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gc~~~~~~~~~~~~~~~~~~~~~~l~~Ig~~~~-~l~~l~l~~~-~  239 (495)
                      ..+  ...++.+++     ..|.  .....++++||+++...+        ...+++.+||||++++ +|++++|+++ .
T Consensus       180 ~~~--~~~~~~~~~-----~~~~--~~~~~~~vlGc~~~~~~~--------~~~~~~~~l~IG~~~~g~f~~l~l~~~~~  242 (496)
T TIGR00272       180 GDL--HYTNIIYPQ-----VNTS--AVEEKFVTIGRTFHVPED--------VDQQEKNLVLFGQHSSEDLHLIHLTTYQD  242 (496)
T ss_pred             ccc--cccceeccc-----cccc--cCCCCceecCccccCccc--------cccccceEEEEcCCCchhhhHhhhhcCCC
Confidence            100  011222211     1111  112236789998664421        2334667999999777 8899988644 4


Q ss_pred             -ceEEEecCCCCcccccccc-HHHHHHHHHHHHHHHhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCC
Q 011028          240 -CEIVRYDATEERLLTDVSQ-PLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKP  317 (495)
Q Consensus       240 -~~v~~yDP~~~~~~~~~~~-~~r~l~rRy~~I~kar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkl  317 (495)
                       +++|+|||+++++..+... ++|+|||||++|+|||+|++||||||||++|+|++++++|+++|+++|||+|+|+||||
T Consensus       243 ~~~v~~~dP~~~~~~~~~~~~~~~~L~rRy~~I~kA~~A~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgki  322 (496)
T TIGR00272       243 LSTVFQFVPIFDPILPESVTGPFPSLRRRYKLVHVARDAGCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKP  322 (496)
T ss_pred             CCceEEECCCCCcceecccchHHHHHHHHHHHHHHHhcCCEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence             6799999999998776645 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHcCCCCCcEEEEecCCCcccccccCCCCcccCHHHHHHhhCCCCcCccceeeecccccCCCC------CCCCCccc
Q 011028          318 NPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEFRDLMSSSP------VEGSDQAE  391 (495)
Q Consensus       318 n~aKLaNF~eID~fV~vaCPr~si~d~~~f~kPViTP~El~vAL~~~~~W~g~y~~Df~~ll~~~~------~~~~~~~~  391 (495)
                      ||+|||||++||+||+|||||++|+|+++|+||||||||++|||+.+.+|.++|..+|..+.+...      .+..++++
T Consensus       323 npaKLaNF~eID~fV~vaCPr~sidd~~~F~KPVlTP~ElelAL~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (496)
T TIGR00272       323 NPAKLANFEDIDIFVLLGCSQSGIIDSNEFYRPIVTPFELNLALSEEVTWVVDFRDSIDEIEQLLGGQDTISPSTTSDEA  402 (496)
T ss_pred             CHHHHhCCCCCCEEEEccCCCcccccHhhCCCceecHHHHHHHhCCcccccchHHHHhhhhhhcccccccCCCccccccC
Confidence            999999999999999999999999999999999999999999999877899999888887764311      11122346


Q ss_pred             ccccccccCcccccCCCCCCCCcchhhhhHHHHhhhhhhhhhhccCCCcceeecccchHHHHhhcCCcccCCCCCCC-CC
Q 011028          392 EARFSFLKGGYVEDVAQPETENGEEEKEGALALANAAEKALQLRDRSLDPIVKGTAKSGAEYFVSRSYHGLEMQCNS-SS  470 (495)
Q Consensus       392 ~p~fslitG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~a~~l~~Rtw~GL~~~~g~-~~  470 (495)
                      +|+||||||+|++++++++.....+...    .....+.+++.+.+.+.+++++++|+||+||++|||||||+++|+ ++
T Consensus       403 ~p~fslitG~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~l~~Rtw~GL~~~~~~~~~  478 (496)
T TIGR00272       403 APEFSLIRGKYTSTSRPLRALTHLELEA----ADNDDSKQSTTRHTASGAVIKGTVSTSASALQNRSWKGLGDDVDSTEV  478 (496)
T ss_pred             CCceeccccceeecCCccchhhhccccc----cCCCCccceeecccCcceeeccccccHHHHhhcCceeCCCCCcCCCCC
Confidence            8999999999999888765222111000    001223345544443336677889999999999999999999986 45


Q ss_pred             CcccccCcccccccccCC
Q 011028          471 PEPYAIGRSGKASGYDDE  488 (495)
Q Consensus       471 ~~~~~~Gr~GiA~gY~~e  488 (495)
                      ++.++|||+||||||+++
T Consensus       479 ~a~~~eGrsGIA~gY~~~  496 (496)
T TIGR00272       479 DAKIEEGISGIARGYGGD  496 (496)
T ss_pred             cceeecCCccccccCCCC
Confidence            789999999999999864

This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain Back     alignment and domain information
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein Back     alignment and domain information
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis Back     alignment and domain information
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query495
3lzc_A378 Crystal Structure Of Dph2 From Pyrococcus Horikoshi 4e-11
>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii Length = 378 Back     alignment and structure 
Iteration: 1

 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 126/312 (40%), Gaps = 47/312 (15%)
Query: 59  VDDKDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASIN 118
           +++ +I +F+  +  YG+C   +  A  V  D +IH GH+ +     +P  FV   A ++
Sbjct: 77  LEENNIEVFLHGEINYGACDPADREAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVS 136
Query: 119 TSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMC 178
               ++         G+ I+V    ++ H +   +E ++        G ++ I   D   
Sbjct: 137 VVEALKENIGEIKKLGRKIIVTTTAQHIHQLKEAKEFLE------SEGFEVSIGRGDSRI 190
Query: 179 TVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFN 238
                     S  G   GC          N    K   E +LF IGS    F  + L   
Sbjct: 191 ----------SWPGQVLGC----------NYSVAKVRGEGILF-IGS--GIFHPLGLAV- 226
Query: 239 GCEIVRYDATEERLLT--------DVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAG 290
                   AT +++L             P + +++R+  + KA DA   GV+V       
Sbjct: 227 --------ATRKKVLAIDPYTKAFSWIDPERFIRKRWAQIAKAMDAKKFGVIVSIKKGQL 278
Query: 291 YLHMIHQMKELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAP 350
            L    ++ +L+ K G++A  +VM   N  KL  FP  + ++ V+C +  L D   +  P
Sbjct: 279 RLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGFP-FEAYVVVACPRVPLDDYGAWRKP 337
Query: 351 VITPFEAMLAFG 362
           V+TP E  +  G
Sbjct: 338 VLTPKEVEILLG 349

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query495
3lzd_A378 DPH2; diphthamide biosynthesis, radical SAM enzyme 5e-78
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A Length = 378 Back     alignment and structure
 Score =  247 bits (632), Expect = 5e-78
 Identities = 69/375 (18%), Positives = 140/375 (37%), Gaps = 49/375 (13%)

Query: 2   DFELNYEIASTA--DFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGV 59
            F + +EI  +     +      RV +Q P+ L +++  +   L                
Sbjct: 34  SFTMLHEIPKSEILKELKRIGAKRVLIQSPEGLRREAEELAGFLE--------------- 78

Query: 60  DDKDIGLFVMADTTYGSCCVDEVGASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINT 119
            + +I +F+  +  YG+C   +  A  V  D +IH GH+ +     +P  FV   A ++ 
Sbjct: 79  -ENNIEVFLHGEINYGACDPADREAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSV 137

Query: 120 SNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSSYGSGLKLEINFADVMCT 179
              ++         G+ I+V    ++ H +   +E ++                      
Sbjct: 138 VEALKENIGEIKKLGRKIIVTTTAQHIHQLKEAKEFLESEGF-----------------E 180

Query: 180 VITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNG 239
           V     D +              G ++       K+    + +IGS       + +    
Sbjct: 181 VSIGRGDSRISWP----------GQVLGCNYSVAKVRGEGILFIGSGIFHPLGLAVA-TR 229

Query: 240 CEIVRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMK 299
            +++  D   +        P + +++R+  + KA DA   GV+V        L    ++ 
Sbjct: 230 KKVLAIDPYTKAF--SWIDPERFIRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIV 287

Query: 300 ELITKAGKKAYTLVMGKPNPAKLANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAML 359
           +L+ K G++A  +VM   N  KL  FP  + ++ V+C +  L D   +  PV+TP E  +
Sbjct: 288 KLLKKHGREARLIVMNDVNYHKLEGFP-FEAYVVVACPRVPLDDYGAWRKPVLTPKEVEI 346

Query: 360 AFGRGTQWTGAYVME 374
             G   ++    ++ 
Sbjct: 347 LLGLREEYEFDEILG 361
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query495
3lzd_A378 DPH2; diphthamide biosynthesis, radical SAM enzyme 100.0
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A Back     alignment and structure
Probab=100.00  E-value=1.5e-94  Score=741.59  Aligned_cols=322  Identities=21%  Similarity=0.319  Sum_probs=289.9

Q ss_pred             cccccchHHHHHHHHhCCCcEEEEeCCccchhhHHHHHHHHHHhhccCCCCCCCCCCCCCceeEEEEcCCccccCccchh
Q 011028            3 FELNYEIASTADFIYSRKFTRVALQFPDNLLKDSIRIVRALRAKLGSLRSSDGERGVDDKDIGLFVMADTTYGSCCVDEV   82 (495)
Q Consensus         3 ~~~~yei~~~i~~I~~~~~krVaLQfPD~Ll~~s~~V~~~L~~~l~~~~~~~~~~~~~~~~~~v~IlaDtsYGsCCVDev   82 (495)
                      ..++|||++|+++|+++++||||||||||||.+|..|++.|++                .++++|||||||||||||||+
T Consensus        37 ~~y~fEi~kti~~I~~~~~krVaLQfPdgLl~~a~~Ia~~L~~----------------~~~e~~IlgDttYGACCVDe~  100 (378)
T 3lzd_A           37 MLHEIPKSEILKELKRIGAKRVLIQSPEGLRREAEELAGFLEE----------------NNIEVFLHGEINYGACDPADR  100 (378)
T ss_dssp             -CCSCCHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHT----------------TTCEEEEECSCCCCTTSCCHH
T ss_pred             ccccccHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHhh----------------cCceEEEEcCCcccCcccCHH
Confidence            4688999999999999999999999999999999999999986                148999999999999999999


Q ss_pred             hhcccCCcEEEEecCCCCCCCCCCCeEEEccccCCChHHHHHHHhhhhcCCCCcEEEEecccchhhhHHHHHHHHhhccC
Q 011028           83 GASHVDADCVIHYGHTCLSPTSTLPAFFVFGKASINTSNCIENLSKHALTNGKPILVLYGLEYAHAIPHIREAVKVASSS  162 (495)
Q Consensus        83 aA~hv~aD~iVHyGhsCls~~~~lpviYVf~~~~id~~~~~~~l~~~~~~~~~~v~l~~dvqy~~~l~~l~~~L~~~~~~  162 (495)
                      +|+|++||+|||||||||++++++||+|||++.++|++++++.+.+.+.+..++|+|++|+||.|+++.+++.|++.++.
T Consensus       101 aA~~v~aD~lVHyGHsCL~~~~~lpvlYVf~~~~iD~~~~~~~~~~~~~~~~~~i~L~~tiq~~~~l~~~~~~L~~~g~~  180 (378)
T 3lzd_A          101 EAKLVGCDALIHLGHSYMKLPLEVPTIFVPAFARVSVVEALKENIGEIKKLGRKIIVTTTAQHIHQLKEAKEFLESEGFE  180 (378)
T ss_dssp             HHHHTTCSEEEEEECCCCSCCCSSCEEEEECCCCCCCHHHHHHTHHHHHTTCSEEEEEECGGGGGGHHHHHHHHHHTTCE
T ss_pred             HHhhcCCCEEEEcCCCcCCcccCCCEEEEeccCCCCHHHHHHHHHHhccCcCCeEEEEEcHHHHHHHHHHHHHHHHcCCe
Confidence            99999999999999999999999999999999999999999999877655467899999999999999999999987642


Q ss_pred             CCCCcceeeeeeccceeeecCCCCCCCCCCCCCCcccccccCcccccCCcccccceEEEEEcCCCchhhhhhhhcCCceE
Q 011028          163 YGSGLKLEINFADVMCTVITPSKDHKSLCGPAGGCTRHTIGGLVWNIPDRKKMEEHLLFWIGSDNSAFANVVLTFNGCEI  242 (495)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gc~~~~~~~~~~~~~~~~~~~~~~l~~Ig~~~~~l~~l~l~~~~~~v  242 (495)
                              +.+        .+...+..++|+++||+++.+.         .+.+  .++|||+|.||+++++|+ +++++
T Consensus       181 --------v~i--------~~~~~~~~~~gqvLGC~~~~~~---------~~~d--~~lyvG~g~FH~~~l~l~-~~~~v  232 (378)
T 3lzd_A          181 --------VSI--------GRGDSRISWPGQVLGCNYSVAK---------VRGE--GILFIGSGIFHPLGLAVA-TRKKV  232 (378)
T ss_dssp             --------EEC--------CCCCTTCSSTTBCBTTBCGGGC---------SSCS--EEEEESSSSHHHHHHHHH-HCSEE
T ss_pred             --------EEe--------cCCCCCCCCCCccccccCCCcc---------cCCc--eEEEEcCCchhHHHHHhc-cCCcE
Confidence                    221        2223344678999999876541         1222  678999999999999999 89999


Q ss_pred             EEecCCCCccccccccHHHHHHHHHHHHHHHhcCCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHH
Q 011028          243 VRYDATEERLLTDVSQPLKILKRRYYLVEKAKDANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKL  322 (495)
Q Consensus       243 ~~yDP~~~~~~~~~~~~~r~l~rRy~~I~kar~A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKL  322 (495)
                      |+|||+++++..+  +++|+|||||++|+|||+|++|||||||||+|+|+.++++|+++|+++|||+|+|+||||||+||
T Consensus       233 ~~yDP~s~~~~~~--~~~~~l~rR~~~I~kA~dA~~~GIIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KL  310 (378)
T 3lzd_A          233 LAIDPYTKAFSWI--DPERFIRKRWAQIAKAMDAKKFGVIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKL  310 (378)
T ss_dssp             EEECTTTCCEEEC--CCHHHHHHHHHHHHHHTTCCEEEEEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHH
T ss_pred             EEECCCCCceeec--cHHHHHHHHHHHHHHHhcCCEEEEEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH
Confidence            9999999987554  48999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEecCCCcccccccCCCCcccCHHHHHHhhCCCCcCccceeeec
Q 011028          323 ANFPECDVFINVSCAQTALLDSKEFLAPVITPFEAMLAFGRGTQWTGAYVMEF  375 (495)
Q Consensus       323 aNF~eID~fV~vaCPr~si~d~~~f~kPViTP~El~vAL~~~~~W~g~y~~Df  375 (495)
                      +|| +||+||++||||++|||+++|+||||||||++|||+...    .|.+|+
T Consensus       311 anF-~iD~fV~vaCPrlsidd~~~F~KPvLTPyE~evAL~~~~----~y~~de  358 (378)
T 3lzd_A          311 EGF-PFEAYVVVACPRVPLDDYGAWRKPVLTPKEVEILLGLRE----EYEFDE  358 (378)
T ss_dssp             TTS-CCSEEEECSCTHHHHSCCSCCSSCEECHHHHHHHTTSCC----SCCCCC
T ss_pred             hCC-CCCEEEEecCCCccccchhhCCCcccCHHHHHHHhCCCC----CCCCcc
Confidence            999 699999999999999999999999999999999999754    555554

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query495
d1byka_255 Trehalose repressor, C-terminal domain {Escherichi 88.33
d2nzug1275 Glucose-resistance amylase regulator CcpA, C-termi 81.2
d2fz5a1137 Flavodoxin {Megasphaera elsdenii [TaxId: 907]} 80.59
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Trehalose repressor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.33  E-value=0.38  Score=43.16  Aligned_cols=76  Identities=9%  Similarity=0.124  Sum_probs=56.0

Q ss_pred             CCeEEEEEccccccCcHHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHcC----C--CCCcEEEEecCCCcccccccCCCC
Q 011028          276 ANIIGVLVGTLGVAGYLHMIHQMKELITKAGKKAYTLVMGKPNPAKLAN----F--PECDVFINVSCAQTALLDSKEFLA  349 (495)
Q Consensus       276 A~~~GIlvgTl~~q~~~~~i~~L~~li~~~GKk~y~~~vgkln~aKLaN----F--~eID~fV~vaCPr~si~d~~~f~k  349 (495)
                      .++||+|+.++.-..+..+++.|.+.++++|....++. +.-++++.++    +  ..+|++++.++.............
T Consensus         2 ~k~Igvi~p~~~~~~~~~~~~~i~~~~~~~Gy~~~~~~-s~~d~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~   80 (255)
T d1byka_           2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMME-SQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQS   80 (255)
T ss_dssp             CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHhccccceeeccccchHHHHHHHcCC
Confidence            58999999998877778999999999999998876554 5677776432    2  269999997775544333344556


Q ss_pred             ccc
Q 011028          350 PVI  352 (495)
Q Consensus       350 PVi  352 (495)
                      |++
T Consensus        81 p~v   83 (255)
T d1byka_          81 SLV   83 (255)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            665
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d2fz5a1 c.23.5.1 (A:1-137) Flavodoxin {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure