Citrus Sinensis ID: 011051

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----
MKNFVFKVLVLFLSCWVALCKECTNSFPQLASHTFRYELLSSKNETWKKEVYSHYHLTPTDDSAWSNLLPRKMLSETDEFSWTMIYRKMKNPDGFKLAGDFLKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGLGFIRWIQLSLS
cccHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHcc
cHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHccccccccHHHHHHHccHHHHccHHHHHHHHHHHHccccccccccccccccccHHHEEEccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHcccccccccccccccHEEEHHHHHHccccHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccccccEEEEcccHHHHHHHHHHHHc
MKNFVFKVLVLFLSCWVALCKEctnsfpqlasHTFRYELLSSKNETWKKEVYshyhltptddsawsnllprkmlsetdeFSWTMIYRKmknpdgfklAGDFLKevslhdvkldpsslhWRAQQTNLEYLLMLDVDSLVWSFqktagsptagkayegwedptcelrghfvGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNkmgsgylsafpseqfdrfealkpvwapyyTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWnslneetggmnDVLYRLYTITQDPKHLLLAhlfdkpcfLGLLAvqaddisgfhanthipvvigsqmryevtgdplykvtGTFFMDIVNashgyatggtsagefwsdpkrlastlgteneescttYNMLKVSRHLFRWTKEMVYADYYERALTNgvlsiqrgtepgvmiymlplgrgdskaksyhgwgtrfssfwccygtglgFIRWIQLSLS
MKNFVFKVLVLFLSCWVALCKECTNSFPQLASHTFRYELLSSKNETWKKEVYSHYHltptddsawsnllPRKMLSETDEFSWTMIYRKMKNPDGFKLAGDFLKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTlgteneescttynmlkvSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGLGFIRWIQLSLS
MKNFVFKVLVLFLSCWVALCKECTNSFPQLASHTFRYELLSSKNETWKKEVYSHYHLTPTDDSAWSNLLPRKMLSETDEFSWTMIYRKMKNPDGFKLAGDFLKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGLGFIRWIQLSLS
***FVFKVLVLFLSCWVALCKECTNSFPQLASHTFRYELLSSKNETWKKEVYSHYHLTPTDDSAWSNLLPRKMLSETDEFSWTMIYRKMKNPDGFKLAGDFLKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGT*NEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGLGFIRWIQL***
**NFVFKVLVLFLSCWVALCKECTNSFPQLASHTF****************YSHYHLTPTDDSAWSNLLPRKMLSETDEFSWT******************LKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGLGFIR*IQ*S**
MKNFVFKVLVLFLSCWVALCKECTNSFPQLASHTFRYELLSSKNETWKKEVYSHYHLTPTDDSAWSNLLPRKMLSETDEFSWTMIYRKMKNPDGFKLAGDFLKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGLGFIRWIQLSLS
*KNFVFKVLVLFLSCWVALCKECTNSFPQLASHTFRYELLSSKNETWKKEVYSHYHLTPTDDSAWSNLLPRKMLSETDEFSWTMIYRKMKNPD******DFLKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGLGFIRWIQLSLS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKNFVFKVLVLFLSCWVALCKECTNSFPQLASHTFRYELLSSKNETWKKEVYSHYHLTPTDDSAWSNLLPRKMLSETDEFSWTMIYRKMKNPDGFKLAGDFLKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGLGFIRWIQLSLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query494
224053368 858 predicted protein [Populus trichocarpa] 0.971 0.559 0.792 0.0
225435510 864 PREDICTED: uncharacterized protein LOC10 0.973 0.556 0.798 0.0
224075776 858 predicted protein [Populus trichocarpa] 0.969 0.558 0.790 0.0
297746357 767 unnamed protein product [Vitis vinifera] 0.973 0.627 0.798 0.0
449448754 868 PREDICTED: uncharacterized protein LOC10 0.949 0.540 0.786 0.0
297807305 862 hypothetical protein ARALYDRAFT_909245 [ 0.965 0.553 0.730 0.0
15239944 861 uncharacterized protein [Arabidopsis tha 0.957 0.549 0.745 0.0
356541181 854 PREDICTED: uncharacterized protein LOC10 0.971 0.562 0.741 0.0
356541912 854 PREDICTED: uncharacterized protein LOC10 0.971 0.562 0.735 0.0
297807309 860 hypothetical protein ARALYDRAFT_350453 [ 0.963 0.553 0.728 0.0
>gi|224053368|ref|XP_002297785.1| predicted protein [Populus trichocarpa] gi|222845043|gb|EEE82590.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/483 (79%), Positives = 428/483 (88%), Gaps = 3/483 (0%)

Query: 1   MKNFVFKVLVLFLSCWVALCKECTNSFPQLASHTFRYELLSSKNETWKKEVYSHYHLTPT 60
           MK  +  ++VL + C     KECTN+  QL+SHTFRY LLSS+NETWK+E+++HYHLTPT
Sbjct: 1   MKGLIV-LVVLSMLCGFGTSKECTNTPTQLSSHTFRYALLSSENETWKEEMFAHYHLTPT 59

Query: 61  DDSAWSNLLPRKMLSETDEFSWTMIYRKMKNPDGFKLAGDFLKEVSLHDVKLDPSSLHWR 120
           DDSAW+NLLPRK+L E DE+SW M+YR +K+P   K +G+FLKEVSLH+V+LDPSS+HW+
Sbjct: 60  DDSAWANLLPRKILREEDEYSWAMMYRNLKSP--LKSSGNFLKEVSLHNVRLDPSSIHWQ 117

Query: 121 AQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMW 180
           AQQTNLEYLLMLDVDSLVWSF+KTAG  T G AY GWE P CELRGHFVGHYLSASA MW
Sbjct: 118 AQQTNLEYLLMLDVDSLVWSFRKTAGLSTPGTAYGGWEAPNCELRGHFVGHYLSASAQMW 177

Query: 181 ASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILA 240
           ASTHN  L+++M+AVVSALS CQ KMGSGYLSAFPSE FDRFEA+KPVWAPYYTIHKILA
Sbjct: 178 ASTHNDILEKQMSAVVSALSSCQEKMGSGYLSAFPSELFDRFEAIKPVWAPYYTIHKILA 237

Query: 241 GLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLY 300
           GLLDQYTFADN QALKM KWMV+YFYNRV+NVIT +SVERH+ SLNEETGGMNDVLY+L+
Sbjct: 238 GLLDQYTFADNAQALKMVKWMVDYFYNRVRNVITNFSVERHYQSLNEETGGMNDVLYKLF 297

Query: 301 TITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKV 360
           +IT DPKHL+LAHLFDKPCFLGLLAVQA+DISGFHANTHIP+VIG+QMRYE+TGDPLYK 
Sbjct: 298 SITGDPKHLVLAHLFDKPCFLGLLAVQAEDISGFHANTHIPIVIGAQMRYEITGDPLYKD 357

Query: 361 TGTFFMDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWT 420
            GTFFMDIVN+SH YATGGTS  EFWSDPKRLASTL TENEESCTTYNMLKVSRHLFRWT
Sbjct: 358 IGTFFMDIVNSSHSYATGGTSVSEFWSDPKRLASTLQTENEESCTTYNMLKVSRHLFRWT 417

Query: 421 KEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYG 480
           KEM YADYYERALTNGVL IQRGTEPGVMIYMLP   G SK KSYHGWGT + +FWCCYG
Sbjct: 418 KEMAYADYYERALTNGVLGIQRGTEPGVMIYMLPQHPGSSKGKSYHGWGTLYDTFWCCYG 477

Query: 481 TGL 483
           TG+
Sbjct: 478 TGI 480

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225435510|ref|XP_002285548.1| PREDICTED: uncharacterized protein LOC100246702 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224075776|ref|XP_002304762.1| predicted protein [Populus trichocarpa] gi|222842194|gb|EEE79741.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297746357|emb|CBI16413.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449448754|ref|XP_004142130.1| PREDICTED: uncharacterized protein LOC101207833 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297807305|ref|XP_002871536.1| hypothetical protein ARALYDRAFT_909245 [Arabidopsis lyrata subsp. lyrata] gi|297317373|gb|EFH47795.1| hypothetical protein ARALYDRAFT_909245 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15239944|ref|NP_196799.1| uncharacterized protein [Arabidopsis thaliana] gi|7630051|emb|CAB88259.1| putative protein [Arabidopsis thaliana] gi|26451123|dbj|BAC42665.1| unknown protein [Arabidopsis thaliana] gi|332004451|gb|AED91834.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356541181|ref|XP_003539059.1| PREDICTED: uncharacterized protein LOC100781521 [Glycine max] Back     alignment and taxonomy information
>gi|356541912|ref|XP_003539416.1| PREDICTED: uncharacterized protein LOC100783150 [Glycine max] Back     alignment and taxonomy information
>gi|297807309|ref|XP_002871538.1| hypothetical protein ARALYDRAFT_350453 [Arabidopsis lyrata subsp. lyrata] gi|297317375|gb|EFH47797.1| hypothetical protein ARALYDRAFT_350453 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query494
TAIR|locus:2182280 861 AT5G12950 [Arabidopsis thalian 0.955 0.548 0.746 8.4e-200
TAIR|locus:2182295 865 AT5G12960 [Arabidopsis thalian 0.955 0.545 0.740 3e-195
UNIPROTKB|Q2KGY9 633 MGCH7_ch7g196 "Putative unchar 0.785 0.612 0.321 2.6e-47
TAIR|locus:2182280 AT5G12950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1934 (685.9 bits), Expect = 8.4e-200, P = 8.4e-200
 Identities = 357/478 (74%), Positives = 405/478 (84%)

Query:     9 LVLFLSCWV--ALCKECTNSFPQLASHTFRYELLSSKNETWKKEVYSHYHLTPTDDSAWS 66
             L+L+ S +V  ++ KECTN+  QL+SHTFR ELL SKNET K E++SHYHLTP DDSAWS
Sbjct:    11 LLLYTSSFVLVSVAKECTNTPTQLSSHTFRSELLQSKNETLKTELFSHYHLTPADDSAWS 70

Query:    67 NLLPRKMLSE-TDEFSWTMIYRKMKNPDGFKLAGDFLKEVSLHDVKLDPSSLHWRAQQTN 125
             +LLPRKML E  DEF+WTM+YRK K+ +    +G+FLK+VSLHDV+LDP S HWRAQQTN
Sbjct:    71 SLLPRKMLKEEADEFAWTMLYRKFKDSNS---SGNFLKDVSLHDVRLDPDSFHWRAQQTN 127

Query:   126 LEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWASTHN 185
             LEYLLMLDVD L WSF+K AG    G  Y GWE P  ELRGHFVGHYLSA+A+MWASTHN
Sbjct:   128 LEYLLMLDVDGLAWSFRKEAGLDAPGDYYGGWERPDSELRGHFVGHYLSATAYMWASTHN 187

Query:   186 VTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQ 245
              TLKEKM+A+VSALSECQ K G+GYLSAFPS  FDRFEA+ PVWAPYYTIHKILAGL+DQ
Sbjct:   188 DTLKEKMSALVSALSECQQKSGTGYLSAFPSSFFDRFEAITPVWAPYYTIHKILAGLVDQ 247

Query:   246 YTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQD 305
             Y  A N+QALKM   M +YFY RV+NVI KYSVERHW SLNEETGGMNDVLY+LY+IT D
Sbjct:   248 YKLAGNSQALKMATGMADYFYGRVRNVIRKYSVERHWQSLNEETGGMNDVLYQLYSITGD 307

Query:   306 PKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIPVVIGSQMRYEVTGDPLYKVTGTFF 365
              K+LLLAHLFDKPCFLG+LA+QADDISGFHANTHIP+V+GSQ RYE+TGD L+K    FF
Sbjct:   308 SKYLLLAHLFDKPCFLGVLAIQADDISGFHANTHIPIVVGSQQRYEITGDLLHKEISMFF 367

Query:   366 MDIVNASHGYATGGTSAGEFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVY 425
             MDI NASH YATGGTS  EFW DPKR+A+ L TENEESCTTYNMLKVSR+LFRWTKE+ Y
Sbjct:   368 MDIFNASHSYATGGTSVSEFWQDPKRMATALQTENEESCTTYNMLKVSRNLFRWTKEVSY 427

Query:   426 ADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGL 483
             ADYYERALTNGVL IQRGT+PG+MIYMLPLG+G SKA +YHGWGT + SFWCCYGTG+
Sbjct:   428 ADYYERALTNGVLGIQRGTQPGLMIYMLPLGKGVSKAVTYHGWGTPYDSFWCCYGTGI 485
GO:0003824 "catalytic activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005773 "vacuole" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
TAIR|locus:2182295 AT5G12960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KGY9 MGCH7_ch7g196 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_I0347
hypothetical protein (858 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XVI.1041.1
hypothetical protein (662 aa)
  •     0.455
estExt_fgenesh4_pm.C_LG_VI0086
hypothetical protein (670 aa)
  •     0.449
estExt_fgenesh4_pg.C_LG_X0561
alpha-galactosidase (EC-3.2.1.22) (649 aa)
  •     0.408
gw1.VIII.287.1
annotation not avaliable (630 aa)
  •     0.403
gw1.X.5154.1
annotation not avaliable (619 aa)
  •     0.401

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
pfam07944 511 pfam07944, DUF1680, Putative glycosyl hydrolase of 1e-121
COG3533 589 COG3533, COG3533, Uncharacterized protein conserve 1e-44
>gnl|CDD|219654 pfam07944, DUF1680, Putative glycosyl hydrolase of unknown function (DUF1680) Back     alignment and domain information 
 Score =  363 bits (935), Expect = e-121
 Identities = 146/385 (37%), Positives = 200/385 (51%), Gaps = 19/385 (4%)

Query: 109 DVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWED--PTCELRG 166
           DV+L  S      QQTN EYLL LD D L+ +F+  AG P    AY GWED  P    RG
Sbjct: 1   DVRLTDS-FWGDRQQTNREYLLPLDPDRLLHTFRLEAGLPNKAIAYGGWEDEFPGFPFRG 59

Query: 167 HFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALK 226
           H +G +LSA A+M AST +  L++++  +V  L+E Q   G GYL  +P   FDR EA  
Sbjct: 60  HDLGKWLSAVAYMLASTPDPELEKRLDRLVDELAEAQ--QGDGYLGTYPESNFDRNEAGN 117

Query: 227 PVWAP---YYTIHKILAGLLDQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWN 283
             WAP    Y + K++AGL+  Y      QAL +   + ++ Y+ V +V+    +++H  
Sbjct: 118 GRWAPNHELYNLGKLIAGLVAYYQATGKRQALDVATRLADWLYD-VTSVLGDEQMQKHLY 176

Query: 284 SLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHANTHIP-V 342
               E GG+N+ L  LY +T D ++L LA  F     L  LA   D + G H NT I   
Sbjct: 177 P---EHGGINEALVELYELTGDKRYLDLAKRFIHNRGLDPLAYGQDHLPGRHQNTAIGHA 233

Query: 343 VIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSAG-EFWSDPKRLASTLGTENE 401
           V G+   YE TGD        FF + V   H Y TGG  +  E +  P  L + L     
Sbjct: 234 VRGAADLYEETGDDALLKAAEFFWNNVVTRHMYVTGGNGSRHEHFGPPYDLPNRLAYC-- 291

Query: 402 ESCTTYNMLKVSRHLFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSK 461
           E+C +YNMLK++R +  WT +  YADYYERAL N +L+ Q   + G+  Y  PL  G  +
Sbjct: 292 ETCASYNMLKLTRRMLEWTPDAKYADYYERALYNHILAGQSP-DGGMFFYFNPLESGPKR 350

Query: 462 AKSYHGWGTRFSSFWCCYGTGLGFI 486
            +   G+ T + S WCC G G    
Sbjct: 351 LR--WGYSTPWDSCWCCPGNGAETH 373

The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One members of this family is annotated as a possible arabinosidase, but no references were found to back this. These proteins are related to a large family of glycosyl hydrolases. Length = 511
>gnl|CDD|226063 COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 494
COG3533 589 Uncharacterized protein conserved in bacteria [Fun 100.0
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 100.0
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 99.16
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 98.93
COG3533 589 Uncharacterized protein conserved in bacteria [Fun 98.85
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 98.68
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 98.35
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 98.33
COG1331667 Highly conserved protein containing a thioredoxin 98.2
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 97.95
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 97.87
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 97.83
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 97.5
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 97.38
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 97.04
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 97.01
PF06662189 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; I 96.98
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 96.82
COG1331667 Highly conserved protein containing a thioredoxin 96.78
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 96.69
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 96.59
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 96.58
PTZ00470522 glycoside hydrolase family 47 protein; Provisional 96.56
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 96.38
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 96.18
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 96.01
PF01532452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 95.95
PF06662189 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; I 95.16
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 94.96
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 94.89
PF01532452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 94.84
PTZ00470522 glycoside hydrolase family 47 protein; Provisional 94.82
KOG2787403 consensus Lanthionine synthetase C-like protein 1 94.08
COG2942388 N-acyl-D-glucosamine 2-epimerase [Carbohydrate tra 93.52
COG2942388 N-acyl-D-glucosamine 2-epimerase [Carbohydrate tra 93.49
PF00759444 Glyco_hydro_9: Glycosyl hydrolase family 9; InterP 93.04
KOG2244786 consensus Highly conserved protein containing a th 91.92
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 90.32
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 90.2
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 89.65
PLN02266510 endoglucanase 89.02
PLN02909486 Endoglucanase 88.61
KOG2244786 consensus Highly conserved protein containing a th 85.81
PLN02175484 endoglucanase 85.79
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 85.34
PLN00119489 endoglucanase 84.31
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 83.82
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 83.41
PLN02340 614 endoglucanase 83.08
PLN02345469 endoglucanase 80.29
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 80.02
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-88  Score=698.43  Aligned_cols=362  Identities=26%  Similarity=0.387  Sum_probs=333.5

Q ss_pred             ccccCCCCeEeCCCCcchHHHHHHHHHHHhcCcchhhHHHHHHhCCCCCCCCCCCccCCCcCccccchhHHHHHHHHHHH
Q 011051          102 LKEVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKAYEGWEDPTCELRGHFVGHYLSASAHMWA  181 (494)
Q Consensus       102 ~~p~~l~~V~l~~~~~~~~~~~~~~~~ll~~~~d~lL~nFr~~AGl~~~g~~~ggWe~~d~~lrGh~~G~~LsA~a~~~a  181 (494)
                      ++|+++++|.+      .+.|..++++++.+++|+|+++|-.+++++.+.+.++||+..  .|+||++||||||+|++++
T Consensus         9 ~r~v~v~~~~~------~~~qg~~~d~v~~~~~d~Lldr~~ea~~l~~~d~~r~g~~~q--~f~dsdlgkwlea~A~~l~   80 (589)
T COG3533           9 LRPVTVKDVIF------GQFQGKNRDVVVSLQADRLLDRCHEAAMLPAKDPFRGGWETQ--MFWDSDLGKWLEAAAYSLA   80 (589)
T ss_pred             cccCCcCchhc------cccccccceeEEecCHHHHHhHhhhccCCCccCcccccceee--eeccccHHHHHHHHHHHHh
Confidence            66666666665      344566778899999999999999999999888889999954  5899999999999999999


Q ss_pred             hcCChhHHHHHHHHHHHHHHHhhhCCCcccccC-----CchhHhhhhhcCCCCcccchHHHHHHHHHHHHHHcCChhHHH
Q 011051          182 STHNVTLKEKMTAVVSALSECQNKMGSGYLSAF-----PSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALK  256 (494)
Q Consensus       182 ~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~-----p~~~~~~l~~~~~~W~p~Y~~hkl~~GLvd~y~~tG~~kaL~  256 (494)
                      .++|++|++++|++|++++++|+  +|||||++     |+++|++++..    +++||.|||++|+||+|++||+.++|+
T Consensus        81 ~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~----HelY~aghLieg~va~~qaTGkr~lld  154 (589)
T COG3533          81 NKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPN----HELYCAGHLIEGGVAAHQATGKRRLLD  154 (589)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccc----hHHHHhHHHHhhhhHHHHhhCcchHHH
Confidence            99999999999999999999999  99999997     78899999754    589999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccccchhhhhhhhcccccchHHHHHHHHHhcCChhHHHHHhhhcccccchhhhhcCCCCCCCcc
Q 011051          257 MTKWMVEYFYNRVQNVITKYSVERHWNSLNEETGGMNDVLYRLYTITQDPKHLLLAHLFDKPCFLGLLAVQADDISGFHA  336 (494)
Q Consensus       257 ia~r~aD~~~~~~~~~~~k~~~~~~~~~l~~e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~~~~~~la~~~d~l~~~HA  336 (494)
                      |++|+|||+...|++..+       +.+..++|++|+++|++||++|||+|||+||++|.+.+..+|++.+.+.+.++||
T Consensus       155 V~~rlADhi~tvfgp~~~-------q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHA  227 (589)
T COG3533         155 VVCRLADHIATVFGPEED-------QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHA  227 (589)
T ss_pred             HHHHHHHhhhhhcCcccc-------ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhH
Confidence            999999999999998533       2345689999999999999999999999999999999999999988888899999


Q ss_pred             cchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCceecccCCC-CCCCCCCCcccccCCCCccccchhhHHHHHHHH
Q 011051          337 NTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYATGGTSA-GEFWSDPKRLASTLGTENEESCTTYNMLKVSRH  415 (494)
Q Consensus       337 nt~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y~TGG~g~-~E~f~~~~~L~~~l~~~~~ETCas~n~lkl~~~  415 (494)
                      |++||+++|+|++|+++||+.++.++++||++|+++++|||||+|+ +|+|+++|+|||.  +.|+|||+||||+||++|
T Consensus       228 vr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn~--~~yAEtCas~~l~~~a~R  305 (589)
T COG3533         228 VRQIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPNR--TAYAETCASYNLLKLARR  305 (589)
T ss_pred             HHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCccc--chHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999975 6999999999996  689999999999999999


Q ss_pred             HhccCCCCchHHHHHHHHhhhhhccCCCCCCCeEEEecCCCCCCccccccCCCCCCCCcccccccccccchhhhhhcc
Q 011051          416 LFRWTKEMVYADYYERALTNGVLSIQRGTEPGVMIYMLPLGRGDSKAKSYHGWGTRFSSFWCCYGTGLGFIRWIQLSL  493 (494)
Q Consensus       416 L~~~tgd~~YaD~~Er~LyN~iLa~~~~~d~g~~~Y~~pL~~g~~k~~~~~~~~~~~~sfwCC~GtG~E~~~~~~~~~  493 (494)
                      ||.+++|++|||+|||+|||++|++|++ |+|+|||+|||+.+..     | .+.++++||||.++|+|+++++.+++
T Consensus       306 ml~~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr-----h-~r~~w~~c~CCppn~ar~~as~g~yi  376 (589)
T COG3533         306 MLGWGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGR-----H-SRQKWFSCWCCPPNGARSVASIGDYI  376 (589)
T ss_pred             HhccCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCC-----c-cccccccCCCCCCcHhhhhhhccceE
Confidence            9999999999999999999999999999 9999999999976653     2 26799999999999999999988764

>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms] Back     alignment and domain information
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only] Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>PLN02266 endoglucanase Back     alignment and domain information
>PLN02909 Endoglucanase Back     alignment and domain information
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only] Back     alignment and domain information
>PLN02175 endoglucanase Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PLN00119 endoglucanase Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>PLN02340 endoglucanase Back     alignment and domain information
>PLN02345 endoglucanase Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query494
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 56/322 (17%), Positives = 101/322 (31%), Gaps = 110/322 (34%)

Query: 42  SKNETWKKEVYSHYHLTPTDDSAWSNLLPRKMLSETDEFSWTMIYRKMKNP----DGFK- 96
           + +E   K +   Y      D      LPR++L+ T+    ++I   +++     D +K 
Sbjct: 299 TPDEV--KSLLLKYLDCRPQD------LPREVLT-TNPRRLSIIAESIRDGLATWDNWKH 349

Query: 97  LAGDFLK---EVSLHDVKLDPSSLHWRAQQTNLEYLLMLDVDSLVWSFQKTAGSPTAGKA 153
           +  D L    E SL+   L+P+       +   + L +    + +         PT    
Sbjct: 350 VNCDKLTTIIESSLN--VLEPAEY-----RKMFDRLSVFPPSAHI---------PT--IL 391

Query: 154 YEG-WEDPTCELRGHFVGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLS 212
               W D         V      S                      L E Q K  +  + 
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYS----------------------LVEKQPKESTISI- 428

Query: 213 AFPSEQFDRFEALKPVWAPYYTIHKILAGLLDQYTFADNTQALKMTK-WMVEYFYN---- 267
             PS   +    LK      Y +H+ +   +D Y       +  +   ++ +YFY+    
Sbjct: 429 --PSIYLE----LKVKLENEYALHRSI---VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 268 ---------------------R-VQNVITKYSVERHWNSLNEETGGMNDVL-----YRLY 300
                                R ++  I      RH ++    +G + + L     Y+ Y
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKI------RHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 301 TITQDPK-HLLLAHLFDKPCFL 321
               DPK   L+  + D   FL
Sbjct: 534 ICDNDPKYERLVNAILD---FL 552
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query494
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 99.09
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 99.01
3pmm_A382 Putative cytoplasmic protein; structural genomics, 98.9
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 98.81
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 98.76
3k11_A445 Putative glycosyl hydrolase; structural genomics, 98.75
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 98.73
1nc5_A373 Hypothetical protein YTER; structural genomics, he 98.7
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 98.69
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 98.65
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 98.57
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 98.57
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 98.39
3pmm_A382 Putative cytoplasmic protein; structural genomics, 98.36
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 98.26
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 98.15
1nc5_A 373 Hypothetical protein YTER; structural genomics, he 98.09
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 97.95
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 97.75
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 97.44
3k11_A445 Putative glycosyl hydrolase; structural genomics, 97.03
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 96.42
1ks8_A433 Endo-B-1,4-glucanase; cellulase, endoglucanase, te 96.29
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 95.76
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 95.59
2xfg_A466 Endoglucanase 1; hydrolase-sugar binding protein c 95.27
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 95.02
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 94.89
1dl2_A 511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 94.65
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 94.34
1tf4_A 605 T. fusca endo/EXO-cellulase E4 catalytic domain an 94.27
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 93.85
1hcu_A 503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 93.76
1g87_A 614 Endocellulase 9G; endoglucanase, cellulose binding 93.55
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 93.08
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 93.03
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 91.89
2ri9_A475 Mannosyl-oligosaccharide alpha-1,2-mannosidase; al 91.61
1hcu_A503 Alpha-1,2-mannosidase; glycosylation, glycosyl hyd 90.6
1clc_A639 Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycos 90.5
2yik_A 611 Endoglucanase; hydrolase; 2.10A {Clostridium therm 89.47
1dl2_A511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 89.32
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 89.21
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 85.4
1ia6_A441 Cellulase CEL9M; cellullase, alpha barrel, hydrola 83.46
1ut9_A609 Cellulose 1,4-beta-cellobiosidase; hydrolase, glyc 83.2
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
Probab=99.09  E-value=3.3e-09  Score=108.95  Aligned_cols=296  Identities=8%  Similarity=-0.077  Sum_probs=169.5

Q ss_pred             chhHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHHH-hhhCCCcccccCCchhHhhhhhcC--CCCcccchHHHHHHHHH
Q 011051          168 FVGHYLSASAHMWAS-THNVTLKEKMTAVVSALSEC-QNKMGSGYLSAFPSEQFDRFEALK--PVWAPYYTIHKILAGLL  243 (494)
Q Consensus       168 ~~G~~LsA~a~~~a~-t~D~~L~~k~d~~Vd~l~~~-Q~~~~dGYL~~~p~~~~~~l~~~~--~~W~p~Y~~hkl~~GLv  243 (494)
                      .-|..|.+.|.+|.. ++|+..++.+++.++.|.+. +.. ..|+..+...       ++.  +.-...|...-++.|+.
T Consensus        54 ~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~-~Gg~~~~~d~-------dg~~~~~~~~~~~~af~i~al~  125 (388)
T 2gz6_A           54 LQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDD-EGNWYFALTR-------GGEPLVQPYNIFSDCFAAMAFS  125 (388)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCT-TSCBCSEECT-------TSCBCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCC-CCCEEEEEcC-------CCCcccCCcchHHHHHHHHHHH
Confidence            458889999999998 89999999999999999987 542 2355554321       010  01124566777899999


Q ss_pred             HHHHHcCChhHHHHHHHHHHHHHHhhcccccccchh-hhhhhhcc--cccchHHHHHHHHHhcCChhHHHHHhhhccc--
Q 011051          244 DQYTFADNTQALKMTKWMVEYFYNRVQNVITKYSVE-RHWNSLNE--ETGGMNDVLYRLYTITQDPKHLLLAHLFDKP--  318 (494)
Q Consensus       244 d~y~~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~-~~~~~l~~--e~GGm~eaL~~LY~iTGd~ryL~lA~~F~~~--  318 (494)
                      .+|++||+++.|+.|.++++.+.+.+....+-.... ..+..++.  -..-+.+++.+||++|||++|++.|+...+.  
T Consensus       126 ~~y~~tg~~~~l~~A~~~~~~i~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~all~l~~~t~d~~~~~~A~~~~~~~~  205 (388)
T 2gz6_A          126 QYALASGEEWAKDVAMQAYNNVLRRKDNPKGKYTKTYPGTRPMKALAVPMILANLTLEMEWLLPQETLENVLAATVQEVM  205 (388)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHTC--------------CCCCEETHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccCcccCCCCCCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999988764210100000 00000110  0001126889999999999999999776331  


Q ss_pred             -ccchhhh--------hcCCCCC---CCccc-c-hHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcCcee-cccCCCC
Q 011051          319 -CFLGLLA--------VQADDIS---GFHAN-T-HIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASHGYA-TGGTSAG  383 (494)
Q Consensus       319 -~~~~~la--------~~~d~l~---~~HAn-t-~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~~y~-TGG~g~~  383 (494)
                       .|.++-.        .....++   +..++ . .+...--+.+++++|||++|+++++..++.+.++-.-. +||+=..
T Consensus       206 ~~~~~~~~g~~~e~~~~~w~~~~~~~~~~~~pgh~~e~a~lL~~~~~~tgd~~~~~~A~~~~~~~~~~g~d~~~Gg~~~~  285 (388)
T 2gz6_A          206 GDFLDQEQGLMYENVAPDGSHIDCFEGRLINPGHGIEAMWFIMDIARRKNDSKTINQAVDVVLNILNFAWDNEYGGLYYF  285 (388)
T ss_dssp             HTTEETTTTEECSEECTTSCCCCSTTTTEECHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHBCTTTCSBCSC
T ss_pred             HHHhccCCCeEEEEECCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCCCCEEEe
Confidence             2222110        0001111   11111 0 12222335577899999999999999999886432222 2444210


Q ss_pred             CCCCCCCcccccCCCCccccchhhHHHHHHHHHhccCCCCchHHHHHHHH---hhhhhccCCCCCCCeEEEecCCCCCCc
Q 011051          384 EFWSDPKRLASTLGTENEESCTTYNMLKVSRHLFRWTKEMVYADYYERAL---TNGVLSIQRGTEPGVMIYMLPLGRGDS  460 (494)
Q Consensus       384 E~f~~~~~L~~~l~~~~~ETCas~n~lkl~~~L~~~tgd~~YaD~~Er~L---yN~iLa~~~~~d~g~~~Y~~pL~~g~~  460 (494)
                      =.+  +..-...+.....-.+.....+.-.-.+++.|||.+|.+.++++.   +++++   ++.+|+-|.+.++=  |.+
T Consensus       286 ~~~--~g~~~~~~~~~~~~~W~qae~i~a~~~ly~~tgd~~yl~~a~~~~~~~~~~~~---D~~~G~w~~~l~~~--g~~  358 (388)
T 2gz6_A          286 MDA--AGHPPQQLEWDQKLWWVHLESLVALAMGYRLTGRDACWAWYQKMHDYSWQHFA---DPEYGEWFGYLNRR--GEV  358 (388)
T ss_dssp             EET--TSCCCSCTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHB---CTTTSSBCCEECTT--SCB
T ss_pred             ecC--CCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCc---CCCCCceEEeeCCC--cCC
Confidence            001  010000000122233445566666677889999999999988853   34433   34245556666654  322


Q ss_pred             cccc-cCCCCCCCCccccc
Q 011051          461 KAKS-YHGWGTRFSSFWCC  478 (494)
Q Consensus       461 k~~~-~~~~~~~~~sfwCC  478 (494)
                      .... ...|-++++.+-||
T Consensus       359 ~~~~~~~~~K~~YH~~~~~  377 (388)
T 2gz6_A          359 LLNLKGGKWKGCFHVPRAM  377 (388)
T ss_dssp             SSCBSCCSSCSSSHHHHHH
T ss_pred             CCcCCCCCCCCCcchHHHH
Confidence            1100 01233567766666
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum} Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Back     alignment and structure
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Back     alignment and structure
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A* Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A* Back     alignment and structure
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1 Back     alignment and structure
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 Back     alignment and structure
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum} Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A* Back     alignment and structure
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query494
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 98.74
d1nc5a_ 363 Hypothetical protein YteR {Bacillus subtilis [TaxI 98.2
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 98.16
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 97.85
d2d5ja1 377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 97.8
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 97.77
d1ia6a_431 Nonprocessive cellulase Cel9M {Clostridium cellulo 97.29
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 97.24
d1ks8a_433 Endo-b-1,4-glucanase {Termite (Nasutitermes takasa 97.11
d1nxca_467 Class I alpha-1;2-mannosidase, catalytic domain {M 96.77
d1nxca_467 Class I alpha-1;2-mannosidase, catalytic domain {M 96.66
d1g87a1454 Endo/exocellulase:cellobiose E-4, N-terminal domai 96.66
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 96.52
d1ut9a1511 Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu 96.09
d1dl2a_ 511 Class I alpha-1;2-mannosidase, catalytic domain {B 95.79
d1tf4a1460 Endo/exocellulase:cellobiose E-4, N-terminal domai 95.74
d1x9da1453 Class I alpha-1;2-mannosidase, catalytic domain {H 95.36
d1clca1441 CelD cellulase, C-terminal domain {Clostridium the 95.29
d1hcua_488 Class I alpha-1;2-mannosidase, catalytic domain {T 94.98
d1x9da1453 Class I alpha-1;2-mannosidase, catalytic domain {H 94.44
d2ri9a1475 Class I alpha-1;2-mannosidase, catalytic domain {F 94.08
d1hcua_488 Class I alpha-1;2-mannosidase, catalytic domain {T 92.41
d1dl2a_511 Class I alpha-1;2-mannosidase, catalytic domain {B 90.92
d2ri9a1475 Class I alpha-1;2-mannosidase, catalytic domain {F 90.23
d1tf4a1460 Endo/exocellulase:cellobiose E-4, N-terminal domai 87.16
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 86.81
d1ia6a_431 Nonprocessive cellulase Cel9M {Clostridium cellulo 84.89
d1ut9a1511 Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu 83.88
d1ks8a_433 Endo-b-1,4-glucanase {Termite (Nasutitermes takasa 83.62
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: Glycosyl Hydrolase Family 88
domain: Unsaturated glucuronyl hydrolase
species: Bacillus sp. GL1 [TaxId: 84635]

Probab=98.74  E-value=2.2e-07  Score=93.80  Aligned_cols=237  Identities=13%  Similarity=0.067  Sum_probs=141.8

Q ss_pred             hhHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhCCCcccccCCchhHhhhhhcCCCCcccchHHH-HHHHHHHHHH
Q 011051          169 VGHYLSASAHMWASTHNVTLKEKMTAVVSALSECQNKMGSGYLSAFPSEQFDRFEALKPVWAPYYTIHK-ILAGLLDQYT  247 (494)
Q Consensus       169 ~G~~LsA~a~~~a~t~D~~L~~k~d~~Vd~l~~~Q~~~~dGYL~~~p~~~~~~l~~~~~~W~p~Y~~hk-l~~GLvd~y~  247 (494)
                      -|-|--.+-.+|..|+|+++++.+.++++.+...-.  +.-.+                   ....+|. +...+++.|+
T Consensus        44 ~Gf~~G~lwl~ye~Tgd~~~~~~a~~~~~~~~~~~~--~~~~~-------------------~~hd~Gf~~~~s~~~~y~  102 (377)
T d2d5ja1          44 DGFWSGILWLCYEYTGDEQYREGAVRTVASFRERLD--RFENL-------------------DHHDIGFLYSLSAKAQWI  102 (377)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH--TTTTC-------------------SSSTHHHHHHTTHHHHHH
T ss_pred             ccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhc--ccccc-------------------cccCcchhhHhHHHHHHH
Confidence            365554455667899999999999999887754322  11011                   1122332 3457888999


Q ss_pred             HcCChhHHHHHHHHHHHHHHhhcccccccchhhhhh----------hhcccccchH-HHHHHHHHhcCChhHHHHHhhhc
Q 011051          248 FADNTQALKMTKWMVEYFYNRVQNVITKYSVERHWN----------SLNEETGGMN-DVLYRLYTITQDPKHLLLAHLFD  316 (494)
Q Consensus       248 ~tG~~kaL~ia~r~aD~~~~~~~~~~~k~~~~~~~~----------~l~~e~GGm~-eaL~~LY~iTGd~ryL~lA~~F~  316 (494)
                      .|||++.++++...++.+..++.+..+.   .+.|.          .+..  +-|+ ..|++++++|||++|++.|.+-.
T Consensus       103 ~Tgd~~y~~~a~~~a~~L~~r~~~~~g~---~~~w~~~~~~~~~~~~~iD--~lm~~~~l~~~~~~tgd~~y~~~A~~h~  177 (377)
T d2d5ja1         103 VEKDESARKLALDAADVLMRRWRADAGI---IQAWGPKGDPENGGRIIID--CLLNLPLLLWAGEQTGDPEYRRVAEAHA  177 (377)
T ss_dssp             HHCCHHHHHHHHHHHHHHHTTEETTTTE---ECCSSSTTCTTTTTEEEGG--GGGGHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcCcCCCc---cccCCCCCCCCCCccchhh--hhhhHHHHHHHHHhcCCHhHHHHHHHHH
Confidence            9999999999999999999987652211   01111          1111  1244 57899999999999999996632


Q ss_pred             cc---cc------------chhhh---hcCCCCCCCc-----ccchHHHHHHHHHHHHHhCChhHHHHHHHHHHHHhhcC
Q 011051          317 KP---CF------------LGLLA---VQADDISGFH-----ANTHIPVVIGSQMRYEVTGDPLYKVTGTFFMDIVNASH  373 (494)
Q Consensus       317 ~~---~~------------~~~la---~~~d~l~~~H-----Ant~ip~~~G~a~~y~~TGD~~yl~a~~~~w~~v~~~~  373 (494)
                      ..   .+            +++..   .......|.|     +--+--.+.|+++.|+.|+|+.|+++++++-+.+.++.
T Consensus       178 ~~~~~~l~r~d~s~~~~~~~~~~tG~~~~~~t~qG~~~~s~WsRGqaW~i~gl~~~~~~t~~~~~l~~a~~~a~~~l~~~  257 (377)
T d2d5ja1         178 LKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHFLARV  257 (377)
T ss_dssp             HHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCCCeEEEEEecCCCCcccCCCCCCCCCCcchHhhchHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhC
Confidence            11   01            11110   0001112222     22344567899999999999999999999999988543


Q ss_pred             ceecccCCCCCCCCCCCcccccCCCCccc----cchhhHHHHHHHHHhccCCC-CchHHHHHHHHhhhhhcc
Q 011051          374 GYATGGTSAGEFWSDPKRLASTLGTENEE----SCTTYNMLKVSRHLFRWTKE-MVYADYYERALTNGVLSI  440 (494)
Q Consensus       374 ~y~TGG~g~~E~f~~~~~L~~~l~~~~~E----TCas~n~lkl~~~L~~~tgd-~~YaD~~Er~LyN~iLa~  440 (494)
                        ..-|+- --.|..|.    . +..+-|    .|++++|+++++.+-.-..+ .+|.+..++++ .++...
T Consensus       258 --~~dgi~-~wd~~~p~----~-~~~~~DsSa~Ai~A~gll~L~~~~~~~~~~~~~Y~~~a~~i~-~~l~~~  320 (377)
T d2d5ja1         258 --PEDGVV-YWDFEVPQ----E-PSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTV-TALRDG  320 (377)
T ss_dssp             --CTTSCC-BSBTTSCC----C-TTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHH-HHHHHH
T ss_pred             --CCCCCc-cccccccC----C-CCCCCCcchHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH-HHHHHh
Confidence              111111 01122222    1 223333    47889999888854321112 34777766655 555554
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ri9a1 a.102.2.1 (A:1036-1510) Class I alpha-1;2-mannosidase, catalytic domain {Fungus (Penicillium citrinum) [TaxId: 5077]} Back     information, alignment and structure
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4, N-terminal domain {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Back     information, alignment and structure