Citrus Sinensis ID: 011052
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | 2.2.26 [Sep-21-2011] | |||||||
| Q8L7S8 | 748 | DEAD-box ATP-dependent RN | no | no | 0.783 | 0.517 | 0.850 | 0.0 | |
| Q0DM51 | 758 | DEAD-box ATP-dependent RN | yes | no | 0.779 | 0.507 | 0.815 | 0.0 | |
| Q0D8N0 | 602 | DEAD-box ATP-dependent RN | no | no | 0.451 | 0.370 | 0.64 | 3e-81 | |
| Q9LUW5 | 616 | DEAD-box ATP-dependent RN | no | no | 0.443 | 0.355 | 0.643 | 2e-80 | |
| Q0ILZ4 | 628 | DEAD-box ATP-dependent RN | no | no | 0.425 | 0.334 | 0.638 | 2e-79 | |
| Q9LUW6 | 610 | DEAD-box ATP-dependent RN | no | no | 0.443 | 0.359 | 0.616 | 2e-78 | |
| Q650T9 | 696 | DEAD-box ATP-dependent RN | no | no | 0.724 | 0.514 | 0.402 | 6e-62 | |
| Q41382 | 685 | DEAD-box ATP-dependent RN | N/A | no | 0.728 | 0.525 | 0.384 | 2e-59 | |
| Q9JIK5 | 851 | Nucleolar RNA helicase 2 | yes | no | 0.809 | 0.470 | 0.354 | 1e-58 | |
| Q9BQ39 | 737 | ATP-dependent RNA helicas | yes | no | 0.744 | 0.499 | 0.379 | 1e-57 |
| >sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/387 (85%), Positives = 362/387 (93%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S
Sbjct: 444 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDS 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RG
Sbjct: 504 IKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL K +P GN++S
Sbjct: 564 FLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLS 623
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRF 387
ITKLP LQDDGPSSDNYGRFSSRDR
Sbjct: 624 MITKLPPLQDDGPSSDNYGRFSSRDRM 650
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Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/385 (81%), Positives = 353/385 (91%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE IL+ LP +RQSMLFSATMP WVKKLSR+YL+NPL IDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI T+TSKRT+LSDLITVYAKGGKTIVFT+TKRDADEVSLALT+ IASEALHGD
Sbjct: 324 GIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES
Sbjct: 444 AGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTES 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RG
Sbjct: 504 IQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F S RSV GFLSDV AADE+GKI + AD++VQGAVFDLPEEIA++LL+ ++PPGNTI+
Sbjct: 564 FFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTIT 623
Query: 361 KITKLPALQDDGPSSDNYGRFSSRD 385
K+TKLPALQDDGP++D+YGRFS+ D
Sbjct: 624 KVTKLPALQDDGPATDSYGRFSNSD 648
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 302 bits (774), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/225 (64%), Positives = 182/225 (80%), Gaps = 2/225 (0%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGF+EDVE+I+ENLP RQSMLFSATMPSW++K++ KYL +P+ IDLVG++D+KL E
Sbjct: 241 MLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPE 300
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ K +IL LI +A GGK IVFTQTKR+AD ++ A+ A +ALHGD
Sbjct: 301 GISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGD 360
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ+QRERTL+GFR G+F +LVATDVAARGLDIPNVDL+IHYELPN E FVHRSGRT R
Sbjct: 361 ISQNQRERTLSGFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTAR 420
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESS 225
AGK+G+AIL++T+ Q R VR +E+D+GCKF + P +E E+S
Sbjct: 421 AGKKGSAILIYTNDQARAVRIIEQDIGCKFTEL--PKIEVADEAS 463
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9LUW5|RH53_ARATH DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 141/219 (64%), Positives = 174/219 (79%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+ILE LP KRQSM+FSATMPSW++ L++KYL+NPL +DLVG+ D+KLA+
Sbjct: 262 MLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLAD 321
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI Y+I + + +I+ L+T +AKGGK IVFTQTKRDAD +S AL EALHGD
Sbjct: 322 GITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGD 381
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F +LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGR
Sbjct: 382 ISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGR 441
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+++ Q R V+ +ER+VG +F + VE
Sbjct: 442 AGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 480
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0ILZ4|RH9_ORYSJ DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 134/210 (63%), Positives = 170/210 (80%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+VGF+EDVE IL+ +PPKRQ+++FSATMP+W+++L++KYL NP+ IDLVG D+KLAE
Sbjct: 255 MLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAE 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI LY+I++ +K +L +LI +AKGGK IVFTQTKRDAD +S + +ALHGD
Sbjct: 315 GISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGD 374
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
I+Q QRERTL GFR+G F +L+ATDVAARGLDIPNVDL+IH+ELPN E FVHRSGRTGR
Sbjct: 375 ITQAQRERTLKGFREGHFNILIATDVAARGLDIPNVDLVIHFELPNSSELFVHRSGRTGR 434
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKF 210
AGK+G AI+M + Q R +R +E DVGCKF
Sbjct: 435 AGKKGKAIVMHSYQQSRAIRMVENDVGCKF 464
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9LUW6|RH9_ARATH DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (751), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 135/219 (61%), Positives = 172/219 (78%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+IL+ LP KRQSM+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+
Sbjct: 274 MLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLAD 333
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI +Y+I+ + + +I+ L+ + KGGK IVFTQTKRDAD ++ L EALHGD
Sbjct: 334 GITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGD 393
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F++LVATDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGR
Sbjct: 394 ISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGR 453
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+ Q R V+ +E++VG +F + VE
Sbjct: 454 AGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVE 492
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 153/380 (40%), Positives = 219/380 (57%), Gaps = 22/380 (5%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+P WVKKLS ++L + +DLVG++ K
Sbjct: 279 MLNMGFVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLK 338
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ A+ ++ ++ D+I Y++GG+TI+FT+TK A ++S I S AL
Sbjct: 339 ASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLS---GLIAGSRAL 395
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD++Q QRE L GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 396 HGDVAQAQREVILAGFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGR 455
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+++F + V +ER+ G KFE +S P DV +S+ + ++ V
Sbjct: 456 TGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVS 515
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TR 293
+ F A++L+ G D LA ALA+ G++ RSL++ TL L T
Sbjct: 516 DSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYTD-IKKRSLLSSMDNHTTLLLQTG 574
Query: 294 DSAFSRGFMSARSVMGFLSDVYPTA--ADEIGKIHIIADDRVQGAVFDLPE-EIAKELLN 350
S ++ GF V+ L P AD G I I AD GAVFD+P E+ +
Sbjct: 575 RSVYAAGF-----VLSTLKRFMPEERLADVKG-ITITADG--TGAVFDVPSAEVEDYIQG 626
Query: 351 KQIPPGNTISKITKLPALQD 370
Q T+ ++ +LP LQ+
Sbjct: 627 AQNAAMVTVEEVKQLPPLQE 646
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q41382|RH7_SPIOL DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 218/377 (57%), Gaps = 17/377 (4%)
Query: 1 MLAVGFEEDVELILENLP--PKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQDEK 57
ML +GF +DVELIL + K Q++LFSAT+PSWVK++S ++L + +DLV +Q K
Sbjct: 271 MLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMK 330
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ I +A+++ ++ D+I Y GG++I+FT+TK A +++ LT + L
Sbjct: 331 ASISVRHIVIPCSASARPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT---GARPL 387
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGDI Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGR
Sbjct: 388 HGDIQQTQREVTLKGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGR 447
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A++++ +R +V +ER+ G KFE +S P DV ++ + A + +
Sbjct: 448 TGRAGNTGVAVMLY-DPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQIS 506
Query: 238 PESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
+ F A+ L+ G D L+ ALA+ +G+S RSL+ +G+VTL L
Sbjct: 507 DSVIPAFKDAAEELLSTSGLSAVDILSKALAKAAGYSD-IKERSLLTGMEGYVTLLLDAG 565
Query: 295 SAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP-EEIAKELLNKQI 353
F + + FL T AD I + + AD GAVFD+P +++ L+ +
Sbjct: 566 RPFYGQSFAYTVLKRFLP---ATKADSIMGVALTADK--SGAVFDVPVDDLETFLVGAEN 620
Query: 354 PPGNTISKITKLPALQD 370
G + + LP L++
Sbjct: 621 AAGVNLDVVKALPPLEE 637
|
Spinacia oleracea (taxid: 3562) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 162/457 (35%), Positives = 246/457 (53%), Gaps = 57/457 (12%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF + VE IL E+ P Q++LFSAT P WV +++KY+ + +DL+
Sbjct: 416 MLDMGFADQVEEILCVAYKKDSEDNP---QTLLFSATCPHWVFNVAKKYMKSTYEQVDLI 472
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G + +K A ++ AI T + ++ D+I VY+ G+TI+F +TK+DA E+S
Sbjct: 473 GKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCI 532
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
+++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL++ P D E+
Sbjct: 533 KQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVES 592
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++ +
Sbjct: 593 YIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAI 652
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+
Sbjct: 653 RLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISGATS-VDQRSLINSQAGFVTM 711
Query: 290 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV---------FDL 340
+ M +S + +++G+ D +V+G V FD+
Sbjct: 712 -----------ILRCSIEMPNISYAWKELKEQLGE---SIDAKVKGMVFLKGKLGVCFDV 757
Query: 341 PEEIAKELLNKQIPPGN-TISKITKLPALQDDGPSSDNYGRFSSRD------RFSRGGGS 393
E E+ K ++ T+ P L +GP GR RD R RGG
Sbjct: 758 RTEAVTEIQEKWHDSRRWQLTVATEQPEL--EGPPDGYRGRMGQRDGSRGAFRGQRGGSR 815
Query: 394 RFSRGGARGGAR--------GGGSMDRRGFRSSRSWG 422
F G RGG+R GG +R F S+++G
Sbjct: 816 NFRGQGQRGGSRNFRGQRPGGGNRGQKRSF--SKAFG 850
|
Can unwind double-stranded RNA (helicase) and can fold or introduce a secondary structure to a single-stranded RNA (foldase). Functions as cofactor for JUN-activated transcription. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9BQ39|DDX50_HUMAN ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 225/390 (57%), Gaps = 22/390 (5%)
Query: 1 MLAVGFEEDVELIL--------ENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLV 51
ML +GF E VE I+ E+ P Q++LFSAT P WV K+++KY+ + +DLV
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNP---QTLLFSATCPQWVYKVAKKYMKSRYEQVDLV 351
Query: 52 GNQDEKLAEGIKLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS 110
G +K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 GKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHI 411
Query: 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET 170
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+
Sbjct: 412 KQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVES 471
Query: 171 FVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVV 230
++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + +
Sbjct: 472 YIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAI 531
Query: 231 ATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTL 289
+L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+
Sbjct: 532 RSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTM 590
Query: 290 QLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELL 349
L + + + LS A +I ++ ++ + G FD+P ++ L
Sbjct: 591 TLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQ 645
Query: 350 NKQIPPGNTISKITKLPALQD--DGPSSDN 377
+ +S KLP +++ DG +S N
Sbjct: 646 AEWHDSDWILSVPAKLPEIEEYYDGNTSSN 675
|
Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| 225450401 | 764 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.900 | 0.582 | 0.818 | 0.0 | |
| 224124522 | 775 | predicted protein [Populus trichocarpa] | 0.923 | 0.588 | 0.791 | 0.0 | |
| 118489724 | 481 | unknown [Populus trichocarpa x Populus d | 0.923 | 0.948 | 0.794 | 0.0 | |
| 356505715 | 771 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.919 | 0.588 | 0.805 | 0.0 | |
| 224124506 | 735 | predicted protein [Populus trichocarpa] | 0.900 | 0.605 | 0.802 | 0.0 | |
| 356534927 | 736 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.892 | 0.599 | 0.781 | 0.0 | |
| 356574052 | 736 | PREDICTED: DEAD-box ATP-dependent RNA he | 0.884 | 0.593 | 0.776 | 0.0 | |
| 357511641 | 753 | DEAD-box ATP-dependent RNA helicase [Med | 0.896 | 0.588 | 0.797 | 0.0 | |
| 147828502 | 786 | hypothetical protein VITISV_015347 [Viti | 0.900 | 0.566 | 0.742 | 0.0 | |
| 255543078 | 772 | dead box ATP-dependent RNA helicase, put | 0.910 | 0.582 | 0.774 | 0.0 |
| >gi|225450401|ref|XP_002278318.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Vitis vinifera] gi|296089875|emb|CBI39694.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/458 (81%), Positives = 403/458 (87%), Gaps = 13/458 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP +RQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+ DEKLAE
Sbjct: 278 MLAVGFEEDVEVILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLVGDHDEKLAE 337
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI TTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS+ALT+ IASEALHGD
Sbjct: 338 GIKLYAIPTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSMALTNSIASEALHGD 397
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 398 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 457
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFTSSQRRTV+SLERDVGCKFEF+SPP +E+VLESSAEQVVATLNGVHPES
Sbjct: 458 AGKEGTAILMFTSSQRRTVKSLERDVGCKFEFISPPAIEEVLESSAEQVVATLNGVHPES 517
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEEKGT ALAAALA LSGFS+PPS RSLI+HEQGWVTLQLTRDS +SRG
Sbjct: 518 VEFFTPTAQKLIEEKGTGALAAALAHLSGFSQPPSFRSLISHEQGWVTLQLTRDSGYSRG 577
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSDVYPTAADE+GKI+++AD+RVQGAVFDLPEEIAKELLNKQ+PPGNTIS
Sbjct: 578 FLSARSVTGFLSDVYPTAADELGKIYLVADERVQGAVFDLPEEIAKELLNKQMPPGNTIS 637
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLPALQDDGP+ D YGRFS+RDR S RGG+R R S
Sbjct: 638 KITKLPALQDDGPAGDYYGRFSNRDRSS------------RGGSRERRGSRISRGRGSSW 685
Query: 421 WGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLI 458
DD + RGGRSFRS NN SR +S+DDWLI
Sbjct: 686 GSDDDGGDDLNRRGGRSFRSNNN-WSRNLRTSEDDWLI 722
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124522|ref|XP_002330044.1| predicted protein [Populus trichocarpa] gi|222871469|gb|EEF08600.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/471 (79%), Positives = 402/471 (85%), Gaps = 15/471 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAE
Sbjct: 295 MLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAE 354
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+S TA SKRTILSDL+TVYAKGGKTI+FTQTKRDADEVS+ALT+ IASEALHGD
Sbjct: 355 GIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNTIASEALHGD 414
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPND ETFVHRSGRTGR
Sbjct: 415 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGR 474
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFTSSQRRTVRSLERD GCKFEFVSPP +E+VLESSAEQVVATL+GVHPES
Sbjct: 475 AGKEGTAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAEQVVATLSGVHPES 534
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEE+GT+ALAAALA LSGFS+PPSSRSLI+H QGW TLQLTRD +SRG
Sbjct: 535 VEFFTPTAQKLIEEQGTNALAAALAHLSGFSQPPSSRSLISHAQGWATLQLTRDPTYSRG 594
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSDVYP AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLNKQIPPGNTI+
Sbjct: 595 FLSARSVTGFLSDVYPAAADEVGKIHVIADERVQGAVFDLPEEIAKELLNKQIPPGNTIA 654
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLPALQDDGP D YGRFSSRDR G R
Sbjct: 655 KITKLPALQDDGPPGDFYGRFSSRDR--------------PARGGPRGQRGGFRSSRGRG 700
Query: 421 WGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDR 471
G D +DG + RGGRS S N S+ S SS DDWLIGG RSSR SRDR
Sbjct: 701 SGRDSDDGGTYRRGGRS-NSNENSWSQMSRSSGDDWLIGGRRSSRPPSRDR 750
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118489724|gb|ABK96663.1| unknown [Populus trichocarpa x Populus deltoides] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/471 (79%), Positives = 403/471 (85%), Gaps = 15/471 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAE
Sbjct: 1 MLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAE 60
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+S TA SKRTILSDL+TVYAKGGKTI+FTQTKRDADEVS+ALT+ IASEALHGD
Sbjct: 61 GIKLYALSATAASKRTILSDLVTVYAKGGKTIIFTQTKRDADEVSMALTNTIASEALHGD 120
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPND ETFVHRSGRTGR
Sbjct: 121 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDAETFVHRSGRTGR 180
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFTSSQRRTVRSLERD GCKFEFVSPP +E+VLESSAEQVVATL+GVHPES
Sbjct: 181 AGKEGTAILMFTSSQRRTVRSLERDAGCKFEFVSPPAIEEVLESSAEQVVATLSGVHPES 240
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEE+GT+ALAAALA LSGFS+PPSSRSLI+HEQGW TLQLTRD +SRG
Sbjct: 241 VEFFTPTAQKLIEEQGTNALAAALAHLSGFSQPPSSRSLISHEQGWATLQLTRDPTYSRG 300
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSDVYP AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLNKQIPPGNTI+
Sbjct: 301 FLSARSVTGFLSDVYPAAADEVGKIHVIADERVQGAVFDLPEEIAKELLNKQIPPGNTIA 360
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLPALQDDGP D YGRFSSRDR G R
Sbjct: 361 KITKLPALQDDGPPGDFYGRFSSRDR--------------PARGGPRGQRGGFRSSRGRG 406
Query: 421 WGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDR 471
G D +DG + RGGRS S N S+ S SS DDWLIGG RSSR SRDR
Sbjct: 407 SGRDSDDGGTYRRGGRS-NSNENSWSQMSRSSGDDWLIGGRRSSRPPSRDR 456
|
Source: Populus trichocarpa x Populus deltoides Species: Populus trichocarpa x Populus deltoides Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505715|ref|XP_003521635.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/462 (80%), Positives = 409/462 (88%), Gaps = 8/462 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILENLP +RQSMLFSATMPSWVKKL+RKYL+NPL IDLVG+++EKLAE
Sbjct: 272 MLAVGFEEDVEMILENLPAQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAE 331
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+ TATSKRTILSDL+TVYAKGGKTIVFTQTKRDADEVSL+LT+ I SEALHGD
Sbjct: 332 GIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGD 391
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 392 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 451
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK+G AIL++TSSQRRTVRSLERDVGCKFEFVS P +E+VLESSAEQVVATL GVHPES
Sbjct: 452 AGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSAPAMEEVLESSAEQVVATLGGVHPES 511
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
V+FFTPTAQRLIEE+GT ALAAALAQLSGFSRPPSSRSLI HEQGW+TLQLTRDS SR
Sbjct: 512 VQFFTPTAQRLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSD-SRR 570
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
+ SARS+ GFLSDVYP AADE+GKIH+IAD++VQGAVFDLPEEIAKELLN+ IPPGNT+S
Sbjct: 571 YFSARSITGFLSDVYPAAADEVGKIHLIADEKVQGAVFDLPEEIAKELLNRDIPPGNTVS 630
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLP+LQDDGP SD YGRFS RDR SR G + +RGG+ S DRRGF+SSR
Sbjct: 631 KITKLPSLQDDGPPSDFYGRFSDRDRSSRRGSTSRGGFSSRGGS---ASRDRRGFKSSRG 687
Query: 421 WGSDDE-DGF---SSSRGGRSFRSGNNRGSRFSTSSDDDWLI 458
W +D D F SS RGGR+F++GN+ SS DDWLI
Sbjct: 688 WDVEDSGDDFGDQSSRRGGRNFKTGNSWSRAAGKSSGDDWLI 729
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124506|ref|XP_002330040.1| predicted protein [Populus trichocarpa] gi|222871465|gb|EEF08596.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/460 (80%), Positives = 400/460 (86%), Gaps = 15/460 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILE+LP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+++EKLAE
Sbjct: 258 MLSFGFEEDVEVILESLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDREEKLAE 317
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAISTTATSKRTILSDL+TVYAKG KTI+FT+TKRDADEVS+ALT IASEALHGD
Sbjct: 318 GIKLYAISTTATSKRTILSDLVTVYAKGEKTIIFTRTKRDADEVSMALTQSIASEALHGD 377
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 378 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 437
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILMFT+SQRRTVRSLERD GCKFEFVSPP +E++LESS EQVVATLNGVHPES
Sbjct: 438 AGKEGTAILMFTNSQRRTVRSLERDAGCKFEFVSPPAIEELLESSTEQVVATLNGVHPES 497
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFTPTAQ+LIEE+GT ALAAALA LSGFSRPPSSRSLI+HEQGW TLQLTRD +SRG
Sbjct: 498 VEFFTPTAQKLIEEQGTSALAAALAHLSGFSRPPSSRSLISHEQGWTTLQLTRDPTYSRG 557
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSDVYP AADEIGKIH+IAD+RVQGAVFDLPEEIAKELLNKQ+PPGNTI
Sbjct: 558 FLSARSVTGFLSDVYPAAADEIGKIHLIADERVQGAVFDLPEEIAKELLNKQLPPGNTIE 617
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLPALQDDGP SD YGRFSSRDR +RGG G +G G
Sbjct: 618 KITKLPALQDDGPPSDFYGRFSSRDRPARGGPRGQRGGFRSSRGQGSGRY---------- 667
Query: 421 WGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGG 460
SDDE ++ RGGRS + N R S S SS DDWL+GG
Sbjct: 668 --SDDEG--TNRRGGRSNSNENTR-SWMSRSSGDDWLVGG 702
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534927|ref|XP_003536002.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/462 (78%), Positives = 392/462 (84%), Gaps = 21/462 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+IL+ +P +RQ+MLFSATMP WVKKLSRKYL+NPL IDLVG Q+EKLAE
Sbjct: 253 MLAVGFEEDVEVILDKVPTQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAE 312
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+ TATSKRT+LSDLITVYAKGGKTIVFTQTK+DADEVS+ALTS IASEALHGD
Sbjct: 313 GIKLYALLATATSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGD 372
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL+IHYELPND ETFVHRSGRTGR
Sbjct: 373 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGR 432
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILM+TSSQRRTVRSLERDVG KFEFVSPP VE++LESSAEQVVATLN VHPES
Sbjct: 433 AGKEGTAILMYTSSQRRTVRSLERDVGSKFEFVSPPAVEEILESSAEQVVATLNRVHPES 492
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
VEFFT TAQ+L+EE+G ALAAALAQ+SGFS+PPS RSLINHEQGW TLQLTRDS S
Sbjct: 493 VEFFTATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDSDTSGR 552
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
+ SARSV GFLSDVY AADE+GKIH+IAD+RVQGAVFDLPEEIAKELLNK +P GNTIS
Sbjct: 553 YFSARSVTGFLSDVYSQAADEVGKIHLIADERVQGAVFDLPEEIAKELLNKDMPSGNTIS 612
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSS-- 418
KITKLP LQD+ P+SD YG+FS RDR + GS D+RGFRSS
Sbjct: 613 KITKLPPLQDNEPASDFYGKFSDRDR-----------------SNPRGSRDQRGFRSSRG 655
Query: 419 RSWGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGG 460
R G D D F RGGRSFRSGNNR SS +DWLIGG
Sbjct: 656 REGGQDSNDEF--GRGGRSFRSGNNRSRTTGKSSGNDWLIGG 695
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574052|ref|XP_003555166.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/460 (77%), Positives = 391/460 (85%), Gaps = 23/460 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+IL+ +P +RQ+MLFSATMP WVKKLSRKYL+NPL IDLVG Q+EKLAE
Sbjct: 255 MLAVGFEEDVEVILDKVPAQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAE 314
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYA+S TA+SKRT+LSDLITVYAKGGKTIVFTQTK+DADEVS+ALTS IASEALHGD
Sbjct: 315 GIKLYALSATASSKRTVLSDLITVYAKGGKTIVFTQTKKDADEVSMALTSSIASEALHGD 374
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL+IHYELPND ETFVHRSGRTGR
Sbjct: 375 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGR 434
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTAILM+TSSQRRTVRSLERDVGCKFEFVSPP +E++LESSAEQVVATLN VHPES
Sbjct: 435 AGKEGTAILMYTSSQRRTVRSLERDVGCKFEFVSPPAMEEILESSAEQVVATLNRVHPES 494
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
V+FF TAQ+L+EE+G ALAAALAQ+SGFS+PPS RSLINHEQGW TLQLTRD S
Sbjct: 495 VDFFIATAQKLVEEQGARALAAALAQMSGFSQPPSCRSLINHEQGWTTLQLTRDPDTSAR 554
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
+ SARSV GFLSDVY AADE+GKIH+IAD+RVQGAVFDLPEEIAKELL K +P GNTIS
Sbjct: 555 YFSARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLTKDLPSGNTIS 614
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLP LQDD P+SD YG+FS RDR +R GS D+RGFRSSR
Sbjct: 615 KITKLPPLQDDEPASDFYGKFSDRDRSNR-----------------RGSRDQRGFRSSRG 657
Query: 421 W--GSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLI 458
W G D +D F +GGRSFRSGN R SS DDWLI
Sbjct: 658 WEGGQDSDDEF--GQGGRSFRSGNK--FRMGKSSGDDWLI 693
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511641|ref|XP_003626109.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|87240993|gb|ABD32851.1| Helicase, C-terminal; Zinc finger, CCHC-type; GUCT [Medicago truncatula] gi|355501124|gb|AES82327.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/464 (79%), Positives = 401/464 (86%), Gaps = 21/464 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEEDVE+ILE LP KRQSMLFSATMPSWVKKL+RKYL+NPL IDLVG+++EKLAE
Sbjct: 268 MLAVGFEEDVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAE 327
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAIS T+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT+ I SEALHGD
Sbjct: 328 GIKLYAISATSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGD 387
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDLIIHYELPNDPETFVHRSGRTGR
Sbjct: 388 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 447
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGK GTAILMFT SQRRTVRSLERDVGCKFEFV+ P VEDVLESSAEQVV TLNGVHPES
Sbjct: 448 AGKLGTAILMFTGSQRRTVRSLERDVGCKFEFVNAPSVEDVLESSAEQVVVTLNGVHPES 507
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
+ FFTPTAQ+LIEEKGT ALAAALAQ+SGFS+PPSSRSLI HEQGWVTLQLTRDS S+
Sbjct: 508 IAFFTPTAQKLIEEKGTTALAAALAQMSGFSQPPSSRSLITHEQGWVTLQLTRDSENSQR 567
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
+ SARSV GFLSDVY AADE+GK+H+IAD+RVQGAVFDLPE+IAKELL+K IP GNTIS
Sbjct: 568 YFSARSVTGFLSDVYSKAADEVGKVHLIADERVQGAVFDLPEDIAKELLDKDIPAGNTIS 627
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
K+TKLP LQDDGP SD YG+FS R+R +R GGSR RG SSR
Sbjct: 628 KVTKLPPLQDDGPPSDFYGKFSDRERNNRRGGSRDGRGFR----------------SSRG 671
Query: 421 W----GSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGG 460
W GSDD+ G SS RGGRS++SGN+ S+ SS DDWLIGG
Sbjct: 672 WDGGRGSDDDFGDSSRRGGRSYKSGNS-WSKPERSSRDDWLIGG 714
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147828502|emb|CAN77581.1| hypothetical protein VITISV_015347 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/505 (74%), Positives = 403/505 (79%), Gaps = 60/505 (11%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL---------- 50
MLAVGFEEDVE+ILE LP +RQSMLFSATMP+WVKKL+RKYLDNPL IDL
Sbjct: 278 MLAVGFEEDVEVILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLGNFCPHWGLN 337
Query: 51 -------------VGNQDEKLAEGIKLYAISTTATSKRTILSDLIT-------------- 83
VG+ DEKLAEGIKLYAI TTATSKRTILSDLIT
Sbjct: 338 LEPPKNPPQTLDHVGDHDEKLAEGIKLYAIPTTATSKRTILSDLITKNIVKDRGGFQYGH 397
Query: 84 -VYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV 142
VYAKGGKTIVFTQTKRDADEVS+ALT+ IASEALHGDISQHQRERTLNGFRQGKFTVLV
Sbjct: 398 KVYAKGGKTIVFTQTKRDADEVSMALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLV 457
Query: 143 ATDVAARGLDIPNVDL---------IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193
ATDVAARGLDIPNVDL IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS
Sbjct: 458 ATDVAARGLDIPNVDLKYVDLLFLQIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 517
Query: 194 SQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIE 253
SQRRTV+SLERDVGCKFEF+SPP +E+VLESSAEQVVATLNGVHPESVEFFTPTAQ+LIE
Sbjct: 518 SQRRTVKSLERDVGCKFEFISPPAIEEVLESSAEQVVATLNGVHPESVEFFTPTAQKLIE 577
Query: 254 EKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSD 313
EKGT ALAAALA LSGFS+PPS RSLI+HEQGWVTLQLTRDS +SRGF+SARSV GFLSD
Sbjct: 578 EKGTGALAAALAHLSGFSQPPSFRSLISHEQGWVTLQLTRDSGYSRGFLSARSVTGFLSD 637
Query: 314 VYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDGP 373
VYPTAADE+GKI+++AD+RVQGAVFDLPEEIAKELLNKQ+PPGNTISKITKLPALQDDGP
Sbjct: 638 VYPTAADELGKIYLVADERVQGAVFDLPEEIAKELLNKQMPPGNTISKITKLPALQDDGP 697
Query: 374 SSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSR 433
+ D YGRFS+RDR SRGG +R R S DD + R
Sbjct: 698 AGDYYGRFSNRDRSSRGG------------SRERRGSRISRGRGSSWGSDDDGGDDLNRR 745
Query: 434 GGRSFRSGNNRGSRFSTSSDDDWLI 458
GGRSFRS NN SR +S+DDWLI
Sbjct: 746 GGRSFRSNNN-WSRNLRTSEDDWLI 769
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543078|ref|XP_002512602.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] gi|223548563|gb|EEF50054.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/471 (77%), Positives = 399/471 (84%), Gaps = 21/471 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GFEEDVE+ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPL IDLVG+Q+EKLAE
Sbjct: 280 MLSFGFEEDVEVILENLPSKRQSMLFSATMPTWVKKLARKYLDNPLQIDLVGDQEEKLAE 339
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAIST ATSKR+ILSDL+TVYAKGGKTI+FTQTKRDADEVS+ LT+ IASEALHGD
Sbjct: 340 GIKLYAISTNATSKRSILSDLVTVYAKGGKTIIFTQTKRDADEVSMVLTNSIASEALHGD 399
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLNGFRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 400 ISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 459
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEGTA+LMFTSSQRRTV+SLERDVGC+FEFVSPP E+VLESSAEQV+ATL+GVHPES
Sbjct: 460 AGKEGTAVLMFTSSQRRTVKSLERDVGCRFEFVSPPGTEEVLESSAEQVIATLSGVHPES 519
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
V FFTPTAQRLIEE+GT ALAAALAQLSGFS+PPSSRSLI+HEQGW TLQLTRD ++SRG
Sbjct: 520 VGFFTPTAQRLIEEQGTSALAAALAQLSGFSQPPSSRSLISHEQGWTTLQLTRDPSYSRG 579
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSDVY AADE+GKIHIIAD++VQGAVFDLPEEIAKELLNKQ+PPGNTIS
Sbjct: 580 FLSARSVTGFLSDVYTAAADEVGKIHIIADEKVQGAVFDLPEEIAKELLNKQLPPGNTIS 639
Query: 361 KITKLPALQDDGPSSDNYGRFSSRDRFSRGGGSRFSRGGARGGARGGGSMDRRGFRSSRS 420
KITKLP+LQDDGP SD YGRFSSRDR R G + G +
Sbjct: 640 KITKLPSLQDDGPPSDFYGRFSSRDRPPR----------GGGRGQRGSRSSQGWGGGRGG 689
Query: 421 WGSDDEDGFSSSRGGRSFRSGNNRGSRFSTSSDDDWLIGGSRSSRSSSRDR 471
SDD+D + G FS SS DDWLIGG RSSR S R R
Sbjct: 690 RNSDDDDD-----------TFRRGGRSFSRSSSDDWLIGGGRSSRPSPRGR 729
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| TAIR|locus:504955106 | 748 | emb1138 "embryo defective 1138 | 0.765 | 0.505 | 0.849 | 2.9e-172 | |
| TAIR|locus:2087852 | 616 | PMH2 "putative mitochondrial R | 0.443 | 0.355 | 0.643 | 9.6e-73 | |
| TAIR|locus:2087832 | 610 | PMH1 "putative mitochondrial R | 0.475 | 0.385 | 0.595 | 4.8e-71 | |
| ZFIN|ZDB-GENE-031113-10 | 759 | ddx21 "DEAD (Asp-Glu-Ala-Asp) | 0.744 | 0.484 | 0.396 | 1e-59 | |
| UNIPROTKB|F1MMK3 | 737 | DDX50 "Uncharacterized protein | 0.751 | 0.503 | 0.379 | 3.2e-58 | |
| UNIPROTKB|E2QTT0 | 738 | DDX50 "Uncharacterized protein | 0.751 | 0.502 | 0.377 | 5.1e-58 | |
| UNIPROTKB|E2RPT4 | 687 | DDX50 "Uncharacterized protein | 0.751 | 0.540 | 0.377 | 5.1e-58 | |
| UNIPROTKB|Q9BQ39 | 737 | DDX50 "ATP-dependent RNA helic | 0.751 | 0.503 | 0.377 | 1.1e-57 | |
| MGI|MGI:2182303 | 734 | Ddx50 "DEAD (Asp-Glu-Ala-Asp) | 0.751 | 0.505 | 0.372 | 1.1e-57 | |
| TAIR|locus:2167903 | 671 | PRH75 [Arabidopsis thaliana (t | 0.732 | 0.539 | 0.390 | 5.9e-57 |
| TAIR|locus:504955106 emb1138 "embryo defective 1138" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1652 (586.6 bits), Expect = 2.9e-172, Sum P(2) = 2.9e-172
Identities = 321/378 (84%), Positives = 354/378 (93%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
MLAVGFEE VE ILENLP KRQSMLFSATMP+WVKKL+RKYLDNPLNIDLVG+QDEKLAE
Sbjct: 264 MLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAE 323
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GIKLYAI+TT+TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL++ IA+EALHGD
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGD 383
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQHQRERTLN FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGR
Sbjct: 384 ISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGR 443
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPES 240
AGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S
Sbjct: 444 AGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDS 503
Query: 241 VEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRG 300
++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RG
Sbjct: 504 IKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARG 563
Query: 301 FMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTIS 360
F+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL K +P GN++S
Sbjct: 564 FLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLS 623
Query: 361 KITKLPALQDDGPSSDNY 378
ITKLP LQDDGPSSDNY
Sbjct: 624 MITKLPPLQDDGPSSDNY 641
|
|
| TAIR|locus:2087852 PMH2 "putative mitochondrial RNA helicase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 141/219 (64%), Positives = 174/219 (79%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+ILE LP KRQSM+FSATMPSW++ L++KYL+NPL +DLVG+ D+KLA+
Sbjct: 262 MLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLAD 321
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI Y+I + + +I+ L+T +AKGGK IVFTQTKRDAD +S AL EALHGD
Sbjct: 322 GITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGD 381
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F +LVATDVAARGLD+PNVDLIIHYELPN+ ETFVHR+GRTGR
Sbjct: 382 ISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGR 441
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219
AGK+G+AIL+++ Q R V+ +ER+VG +F + VE
Sbjct: 442 AGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPSIAVE 480
|
|
| TAIR|locus:2087832 PMH1 "putative mitochondrial RNA helicase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 140/235 (59%), Positives = 177/235 (75%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML VGF EDVE+IL+ LP KRQSM+FSATMPSW++ L++KYL+NPL IDLVG+ D+KLA+
Sbjct: 274 MLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLAD 333
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGD 120
GI +Y+I+ + + +I+ L+ + KGGK IVFTQTKRDAD ++ L EALHGD
Sbjct: 334 GITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGD 393
Query: 121 ISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
ISQ QRERTL GFR G F++LVATDVAARGLD+PNVDL+IHYELPN+ ETFVHR+GRTGR
Sbjct: 394 ISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGR 453
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNG 235
AGK+G+AIL+ Q R V+ +E++VG +F + VE S E V A G
Sbjct: 454 AGKKGSAILIHGQDQTRAVKMIEKEVGSRFNELPSIAVERGSASMFEGVGARSGG 508
|
|
| ZFIN|ZDB-GENE-031113-10 ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 153/386 (39%), Positives = 229/386 (59%)
Query: 1 MLAVGFEEDVELIL-----ENLPPKRQSMLFSATMPSWVKKLSRKYLDNP-LNIDLVGNQ 54
ML +GF E VE IL ++ K Q++LFSAT PSWV +++KY+ + +++DL+G +
Sbjct: 324 MLDMGFAEQVEEILSASYKKDAEQKPQTLLFSATCPSWVYDVAKKYMRSQFIHVDLIGKK 383
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI+ + + +++ D+I VY+ G+TIVF +TK++A E+SL TSI
Sbjct: 384 TQKAATTVEHLAIACHWSQRASVIGDVIQVYSGSHGRTIVFCETKKEATELSLN-TSIKQ 442
Query: 114 S-EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
S ++LHGDI Q QRE TL GFR G F VLVAT+VAARGLDIP VDL+I PND E+++
Sbjct: 443 SAQSLHGDIPQKQREVTLKGFRNGSFEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYI 502
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVAT 232
HRSGRTGRAG+ G I + + ++ +E+ G F+ V P D+++SS++ V
Sbjct: 503 HRSGRTGRAGRTGICICFYQRKEESQLKFVEQKAGITFKRVGVPTAYDIIQSSSKDAVRF 562
Query: 233 LNGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 291
L+ V +V +F AQ LI+++G +ALAAALA +SG + RSLIN E G+ ++ L
Sbjct: 563 LDSVPAVAVGYFREAAQELIQQRGAVEALAAALAHISG-ATSLEQRSLINSEPGFSSMIL 621
Query: 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK 351
+ + R + L + I H++ +G FD+P KE+ K
Sbjct: 622 SCSQEMHSISFAWRGLKEQLGEEID---QHIS--HMVFIKGKKGVCFDVPVSKLKEVQEK 676
Query: 352 -QIPPGNTISKITKLPALQDD-GPSS 375
Q T+S T+LP L+ P+S
Sbjct: 677 WQDSRRWTLSTATQLPELEQSLRPNS 702
|
|
| UNIPROTKB|F1MMK3 DDX50 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 147/387 (37%), Positives = 223/387 (57%)
Query: 1 MLAVGFEEDVELILE-----NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQ 54
ML +GF E VE IL + Q++LFSAT P WV K+++KY+ + +DLVG
Sbjct: 295 MLDLGFAEQVEDILHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKM 354
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 355 TQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN 414
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 415 AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIH 474
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + + +L
Sbjct: 475 RSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSL 534
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L
Sbjct: 535 ASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSF-EPRSLITSDKGFVTMTLE 593
Query: 293 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352
+ + + LS A +I ++ ++ + G FD+P ++ L +
Sbjct: 594 SPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEW 648
Query: 353 IPPGNTISKITKLPALQD--DGPSSDN 377
+S KLP +++ DG +S N
Sbjct: 649 HDSDWILSVPAKLPEIEEYYDGNTSSN 675
|
|
| UNIPROTKB|E2QTT0 DDX50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 146/387 (37%), Positives = 223/387 (57%)
Query: 1 MLAVGFEEDVELILE-----NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQ 54
ML +GF E VE I+ + Q++LFSAT P WV K+++KY+ + +DLVG
Sbjct: 296 MLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKM 355
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 356 TQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN 415
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 416 AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIH 475
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + + +L
Sbjct: 476 RSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSL 535
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L
Sbjct: 536 ASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSF-EPRSLITSDKGFVTMTLE 594
Query: 293 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352
+ + + LS A +I ++ ++ + G FD+P ++ L +
Sbjct: 595 SPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEW 649
Query: 353 IPPGNTISKITKLPALQD--DGPSSDN 377
+S KLP +++ DG +S N
Sbjct: 650 HDSDWILSLPAKLPEIEEYYDGNTSSN 676
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| UNIPROTKB|E2RPT4 DDX50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 146/387 (37%), Positives = 223/387 (57%)
Query: 1 MLAVGFEEDVELILE-----NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQ 54
ML +GF E VE I+ + Q++LFSAT P WV K+++KY+ + +DLVG
Sbjct: 297 MLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKM 356
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 357 TQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN 416
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 417 AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIH 476
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + + +L
Sbjct: 477 RSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSL 536
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L
Sbjct: 537 ASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSF-EPRSLITSDKGFVTMTLE 595
Query: 293 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352
+ + + LS A +I ++ ++ + G FD+P ++ L +
Sbjct: 596 SPEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEW 650
Query: 353 IPPGNTISKITKLPALQD--DGPSSDN 377
+S KLP +++ DG +S N
Sbjct: 651 HDSDWILSLPAKLPEIEEYYDGNTSSN 677
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|
| UNIPROTKB|Q9BQ39 DDX50 "ATP-dependent RNA helicase DDX50" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 146/387 (37%), Positives = 223/387 (57%)
Query: 1 MLAVGFEEDVELILE-----NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQ 54
ML +GF E VE I+ + Q++LFSAT P WV K+++KY+ + +DLVG
Sbjct: 295 MLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKM 354
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 355 TQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN 414
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 415 AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIH 474
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + + +L
Sbjct: 475 RSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSL 534
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L
Sbjct: 535 ASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSF-EPRSLITSDKGFVTMTLE 593
Query: 293 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352
+ + + LS A +I ++ ++ + G FD+P ++ L +
Sbjct: 594 SLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEW 648
Query: 353 IPPGNTISKITKLPALQD--DGPSSDN 377
+S KLP +++ DG +S N
Sbjct: 649 HDSDWILSVPAKLPEIEEYYDGNTSSN 675
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| MGI|MGI:2182303 Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 144/387 (37%), Positives = 222/387 (57%)
Query: 1 MLAVGFEEDVELILE-----NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLN-IDLVGNQ 54
ML +GF E VE I+ + Q++LFSAT P WV K+++KY+ + +DLVG
Sbjct: 292 MLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKM 351
Query: 55 DEKLAEGIKLYAISTTATSKRTILSDLITVYAKG-GKTIVFTQTKRDADEVSLALTSIIA 113
+K A ++ AI + + ++ D++ VY+ G+ I+F +TK++ E+++
Sbjct: 352 TQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQN 411
Query: 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
++ LHGDI+Q QRE TL GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++H
Sbjct: 412 AQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIH 471
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATL 233
RSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + + +L
Sbjct: 472 RSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSL 531
Query: 234 NGVHPESVEFFTPTAQRLIEEKGT-DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292
V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L
Sbjct: 532 ASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSF-EPRSLITSDKGFVTMTLE 590
Query: 293 RDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352
+ + + LS A + ++ ++ + G FD+P ++ L +
Sbjct: 591 SPEEIQDVSCAWKELNRKLSS---NAVSHVTRMCLLKGN--MGVCFDVPTSESERLQAEW 645
Query: 353 IPPGNTISKITKLPALQD--DGPSSDN 377
+S KLP +++ DG +S N
Sbjct: 646 HDSDWILSVPAKLPEIEEYYDGNTSSN 672
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| TAIR|locus:2167903 PRH75 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 149/382 (39%), Positives = 214/382 (56%)
Query: 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEK 57
ML +GF EDVELIL + K Q++LFSAT+PSWVK +S ++L + IDLVGN K
Sbjct: 260 MLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMK 319
Query: 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEAL 117
+ ++ AI + ++ D+I+ Y+ GG+TI+F +TK E+S L S AL
Sbjct: 320 ASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDG---SRAL 376
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+I Q QRE TL GFR GKF LVAT+VAARGLDI +V LII E P + E ++HRSGR
Sbjct: 377 HGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGR 436
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVH 237
TGRAG G A+ ++ S++ +V +E++ G KFE ++ P +++ S + + V
Sbjct: 437 TGRAGNTGVAVTLY-DSRKSSVSRIEKEAGIKFEHLAAPQPDEIARSGGMEAAEKVKQVC 495
Query: 238 PESVEFFTPTAQRLIEEKGTDA---LAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRD 294
V F A+ L+E G A LA ALA+ +GF+ RSL+ + +VTL L
Sbjct: 496 DSVVPAFLEAAKELLETSGLSAEVLLAKALAKTAGFTEI-KKRSLLTSMENYVTLHLEA- 553
Query: 295 SAFSRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQGAVFDLPE-EIAKELLNKQ 352
+ S V G L V P E I + + AD GAVFD+ + ++ + Q
Sbjct: 554 ---GKPIYSPSFVYGLLRRVLPDDKVEMIEGLSLTADKT--GAVFDVKQSDLDLFIAGAQ 608
Query: 353 IPPGNTISKITK-LPALQDDGP 373
G+ ++ K +P LQ+ P
Sbjct: 609 KSAGSMSLEVVKVMPKLQEREP 630
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0DM51 | RH3_ORYSJ | 3, ., 6, ., 4, ., 1, 3 | 0.8155 | 0.7793 | 0.5079 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.914 |
| 3rd Layer | 3.6.4 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00022481001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (762 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00000559001 | SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (169 aa) | • | 0.499 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 494 | |||
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 4e-63 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 6e-49 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 3e-40 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 8e-39 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 2e-38 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-37 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 7e-35 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 3e-34 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 6e-33 | |
| pfam08152 | 97 | pfam08152, GUCT, GUCT (NUC152) domain | 3e-28 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 3e-28 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 3e-27 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 1e-26 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 3e-25 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 2e-19 | |
| cd12938 | 74 | cd12938, GUCT_Hera, RNA-binding GUCT-like domain f | 5e-19 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 2e-15 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 9e-15 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 8e-14 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 3e-13 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 1e-12 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 7e-11 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 9e-10 | |
| cd12937 | 86 | cd12937, GUCT_RH7_like, RNA-binding GUCT domain fo | 1e-08 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-08 | |
| TIGR01587 | 358 | TIGR01587, cas3_core, CRISPR-associated helicase C | 3e-08 | |
| TIGR00631 | 655 | TIGR00631, uvrb, excinuclease ABC, B subunit | 1e-07 | |
| COG0556 | 663 | COG0556, UvrB, Helicase subunit of the DNA excisio | 1e-07 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 2e-07 | |
| TIGR00580 | 926 | TIGR00580, mfd, transcription-repair coupling fact | 3e-07 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 1e-06 | |
| COG1197 | 1139 | COG1197, Mfd, Transcription-repair coupling factor | 1e-06 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 3e-06 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 3e-06 | |
| cd09639 | 353 | cd09639, Cas3_I, CRISPR/Cas system-associated prot | 5e-06 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 9e-06 | |
| COG1200 | 677 | COG1200, RecG, RecG-like helicase [DNA replication | 2e-05 | |
| PRK11057 | 607 | PRK11057, PRK11057, ATP-dependent DNA helicase Rec | 2e-05 | |
| PRK10689 | 1147 | PRK10689, PRK10689, transcription-repair coupling | 2e-05 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 2e-04 | |
| PRK05580 | 679 | PRK05580, PRK05580, primosome assembly protein Pri | 7e-04 | |
| COG4098 | 441 | COG4098, comFA, Superfamily II DNA/RNA helicase re | 8e-04 | |
| TIGR03817 | 742 | TIGR03817, DECH_helic, helicase/secretion neighbor | 0.001 | |
| PRK05298 | 652 | PRK05298, PRK05298, excinuclease ABC subunit B; Pr | 0.001 | |
| PLN03137 | 1195 | PLN03137, PLN03137, ATP-dependent DNA helicase; Q4 | 0.001 | |
| PRK10917 | 681 | PRK10917, PRK10917, ATP-dependent DNA helicase Rec | 0.002 | |
| PTZ00146 | 293 | PTZ00146, PTZ00146, fibrillarin; Provisional | 0.004 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 4e-63
Identities = 100/289 (34%), Positives = 157/289 (54%), Gaps = 12/289 (4%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF +D+E IL+ LPP RQ++LFSATMP +++L+R+YL++P+ I++ + E+ +
Sbjct: 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLK 245
Query: 61 GIKLYAIST-TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
IK + + + K +L L+ +G + IVF +TKR +E++ +L ALH
Sbjct: 246 KIKQFYLEVESEEEKLELLLKLLKDEDEG-RVIVFVRTKRLVEELAESLRKRGFKVAALH 304
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
GD+ Q +R+R L F+ G+ VLVATDVAARGLDIP+V +I+Y+LP DPE +VHR GRT
Sbjct: 305 GDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRT 364
Query: 179 GRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFE-FVSPPVVEDVLESSAEQVVATLNGV 236
GRAG++G AI T + + ++ +E+ + K V P+ E + L
Sbjct: 365 GRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEEE 424
Query: 237 HPESVE-------FFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRS 278
S E + + LA ++ G +
Sbjct: 425 SDISDEIKKLKSSKKALLRGLGVRFTLSKLLANLGKEIPGAGDAVTIDP 473
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Length = 513 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 6e-49
Identities = 75/217 (34%), Positives = 124/217 (57%), Gaps = 5/217 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF++ ++ I+ P +RQ++LFSAT P + +S+++ +P+ + V + + A
Sbjct: 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVK-VESTHDLPA- 216
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
I+ + + L L+ + + +VF TK++ EV+ AL + ++ ALHG
Sbjct: 217 -IEQRFYEVSPDERLPALQRLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHG 274
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
D+ Q R++ L F +VLVATDVAARGLDI ++ +I+YEL DPE VHR GRTG
Sbjct: 275 DLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTG 334
Query: 180 RAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
RAG +G A+ + + + ++E +G K + P
Sbjct: 335 RAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLP 371
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Length = 460 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 3e-40
Identities = 84/207 (40%), Positives = 121/207 (58%), Gaps = 8/207 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF D+ +L LP KRQ++LFSAT +K L+ K L NPL I++ + +E
Sbjct: 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVA--RRNTASE 218
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGG--KTIVFTQTKRDADEVSLALTSI-IASEAL 117
+ + KR +LS +I KG + +VFT+TK A+ ++ L I S A+
Sbjct: 219 QVTQHVHFVDKKRKRELLSQMI---GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAI 275
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+ SQ R R L F+ G VLVATD+AARGLDI + +++YELPN PE +VHR GR
Sbjct: 276 HGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGR 335
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLER 204
TGRA G A+ + + + +R +E+
Sbjct: 336 TGRAAATGEALSLVCVDEHKLLRDIEK 362
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Length = 456 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 8e-39
Identities = 73/207 (35%), Positives = 116/207 (56%), Gaps = 4/207 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYL-DNPLNIDLVGNQDEKLA 59
ML +GFE + I+ + P RQ++++SAT P V+ L+R + P++++ VG+ D
Sbjct: 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVN-VGSLDLTAC 347
Query: 60 EGIKLYAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLAL-TSIIASEAL 117
IK KR L L+ + G K ++F +TK+ AD ++ L + +
Sbjct: 348 HNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCI 407
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HGD Q +R LN F+ GK +++ATDVA+RGLD+ +V +I+++ PN E +VHR GR
Sbjct: 408 HGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGR 467
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLER 204
TGRAG +G + T + R R L +
Sbjct: 468 TGRAGAKGASYTFLTPDKYRLARDLVK 494
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Length = 545 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-38
Identities = 57/119 (47%), Positives = 81/119 (68%), Gaps = 2/119 (1%)
Query: 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLN 131
K L +L+ + KGGK ++F +K+ DE++ L I ALHGD SQ +RE L
Sbjct: 13 KLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLK 72
Query: 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190
FR+G+ VLVATDV ARG+D+PNV ++I+Y+LP P +++ R GR GRAG++GTAIL+
Sbjct: 73 DFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 1e-37
Identities = 98/304 (32%), Positives = 153/304 (50%), Gaps = 58/304 (19%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML +GF EDVE I+ +P Q+ LFSATMP +++++R+++ P +
Sbjct: 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEV------------ 208
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGK--------------TIVFTQTKRDADEVSL 106
I ++ T++ I TV+ I+F +TK EV+
Sbjct: 209 -----RIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAE 263
Query: 107 ALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165
AL + S AL+GD++Q RE+TL + G+ +L+ATDVAARGLD+ + L+++Y++P
Sbjct: 264 ALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIP 323
Query: 166 NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP--------- 216
D E++VHR GRTGRAG+ G A+L + +RR +R++ER + V P
Sbjct: 324 MDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRR 383
Query: 217 ------VVEDVLESS-AEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 269
V+ LESS +Q A L + P + EE + LAAAL +++
Sbjct: 384 LEKFAAKVQQQLESSDLDQYRALLAKIQPTAEG----------EELDLETLAAALLKMAQ 433
Query: 270 FSRP 273
RP
Sbjct: 434 GERP 437
|
Length = 629 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 7e-35
Identities = 72/209 (34%), Positives = 117/209 (55%), Gaps = 11/209 (5%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML+ GF+ + + + LPP Q LFSATMP+ + +L+ K++ +P I LV +DE E
Sbjct: 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRI-LV-KKDELTLE 239
Query: 61 GIKLYAISTTATS-KRTILSDL---ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE 115
GI+ + ++ K L DL +T+ + I++ T+R D ++ +
Sbjct: 240 GIRQFYVAVEKEEWKFDTLCDLYETLTIT----QAIIYCNTRRKVDYLTKKMHERDFTVS 295
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
+HGD+ Q R+ + FR G VL+ TD+ ARG+D+ V L+I+Y+LP PE ++HR
Sbjct: 296 CMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRI 355
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLER 204
GR+GR G++G AI T ++ +ER
Sbjct: 356 GRSGRFGRKGVAINFVTPDDIEQLKEIER 384
|
Length = 401 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-34
Identities = 63/190 (33%), Positives = 111/190 (58%), Gaps = 4/190 (2%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMP-SWVKKLSRKYLDNPLNIDLVGNQDEKLA 59
ML +GF +D+E I ++Q++LFSAT+ V+ + + L++P+ ++ ++ E+
Sbjct: 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRER-K 217
Query: 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALH 118
+ + Y + K +L L+ + ++IVF +T+ E++ L I L
Sbjct: 218 KIHQWYYRADDLEHKTALLCHLLK-QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLE 276
Query: 119 GDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178
G++ Q +R + G+ VLVATDVAARG+DI +V +I++++P +T++HR GRT
Sbjct: 277 GEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRT 336
Query: 179 GRAGKEGTAI 188
GRAG++GTAI
Sbjct: 337 GRAGRKGTAI 346
|
Length = 434 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 6e-33
Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 6/219 (2%)
Query: 1 MLAVGFEEDVELILENLPPK--RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL 58
ML +GF V I+ P K RQ++LFSAT V L++++ +P +++ +
Sbjct: 249 MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEI--EPENVA 306
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
++ ++ + + + K +L +L+T + +VF K + + L I + L
Sbjct: 307 SDTVEQHVYAVAGSDKYKLLYNLVT-QNPWERVMVFANRKDEVRRIEERLVKDGINAAQL 365
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
GD+ QH+R +TL GFR+GK VLVATDVA RG+ I + +I++ LP DP+ +VHR GR
Sbjct: 366 SGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGR 425
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216
TGRAG G +I + +E +G K PP
Sbjct: 426 TGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPP 464
|
Length = 475 |
| >gnl|CDD|203861 pfam08152, GUCT, GUCT (NUC152) domain | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-28
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 269 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHII 328
G++ RSL+ E+G+VTLQLT + +S+ FL D D I + ++
Sbjct: 1 GYTSI-KQRSLLTSEEGYVTLQLTSGRPIPTPSFAWKSLRRFLPD---EKVDSIKGMTLL 56
Query: 329 ADDRVQGAVFDLPEEIAKELLNKQIPP-GNTISKITKLPALQD 370
AD+ QGAVFD+PEE A+E L P G + T+LP LQ+
Sbjct: 57 ADN--QGAVFDVPEEDAEEFLAGWQPAAGVQLEVATELPPLQE 97
|
This is the C terminal domain found in the RNA helicase II / Gu protein family. Length = 97 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-28
Identities = 71/195 (36%), Positives = 109/195 (55%), Gaps = 14/195 (7%)
Query: 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL 58
M +GF +D+ + +PP +R +MLFSAT+ V++L+ ++++NP +++ Q K
Sbjct: 169 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ--KT 226
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA-- 116
IK + K +L LI + I+F TK +E+ +A++
Sbjct: 227 GHRIKEELFYPSNEEKMRLLQTLIE-EEWPDRAIIFANTKHRCEEI----WGHLAADGHR 281
Query: 117 ---LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVH 173
L GD++Q +R R L F +G +LVATDVAARGL IP V + +Y+LP+D E +VH
Sbjct: 282 VGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVH 341
Query: 174 RSGRTGRAGKEGTAI 188
R GRTGRAG G +I
Sbjct: 342 RIGRTGRAGASGHSI 356
|
Length = 423 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-27
Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 112 IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF 171
I LHG +SQ +RE L FR GK VLVATDVA RG+D+P+V+L+I+Y+LP +P ++
Sbjct: 8 IKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDLPWNPASY 67
Query: 172 VHRSGRTGRAG 182
+ R GR GRAG
Sbjct: 68 IQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 1e-26
Identities = 71/191 (37%), Positives = 110/191 (57%), Gaps = 6/191 (3%)
Query: 1 MLAVGFEEDVELILENLPPK--RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKL 58
M +GF +D+ +L +P + RQ++LFSAT+ V +L+ ++++ P LV +
Sbjct: 171 MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEK--LVVETETIT 228
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEAL 117
A ++ K+T+L L++ ++G +T+VF TK + V+ L L
Sbjct: 229 AARVRQRIYFPADEEKQTLLLGLLS-RSEGARTMVFVNTKAFVERVARTLERHGYRVGVL 287
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
GD+ Q +RE LN F++G+ +LVATDVAARGL I V + +Y+LP D E +VHR GR
Sbjct: 288 SGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGR 347
Query: 178 TGRAGKEGTAI 188
T R G+EG AI
Sbjct: 348 TARLGEEGDAI 358
|
Length = 572 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 3e-25
Identities = 42/82 (51%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 102 DEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160
+E++ L + I LHG +SQ +RE L+ F GK VLVATDVA RGLD+P VDL+I
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVI 60
Query: 161 HYELPNDPETFVHRSGRTGRAG 182
Y+LP P +++ R GR GRAG
Sbjct: 61 IYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 2e-19
Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 6/200 (3%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
ML GF + V I + L + Q +LFSAT+ V+K + + + I +GN + + +
Sbjct: 282 MLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILIS-IGNPN-RPNK 338
Query: 61 GIKLYAISTTATSKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTSIIASEAL-- 117
+K AI K+ L D++ +VF ++ AD ++ A+T + +AL
Sbjct: 339 AVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSI 398
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG+ S +R + F G+ V+VAT V RG+D+ V +I +++PN + ++H+ GR
Sbjct: 399 HGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGR 458
Query: 178 TGRAGKEGTAILMFTSSQRR 197
R G++GTAI+ R
Sbjct: 459 ASRMGEKGTAIVFVNEEDRN 478
|
Length = 518 |
| >gnl|CDD|240595 cd12938, GUCT_Hera, RNA-binding GUCT-like domain found in Thermus thermophilus heat resistant RNA-dependent ATPase (Hera) and similar proteins | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 5e-19
Identities = 42/81 (51%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 276 SRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQG 335
RSL+ E+GW TLQLT S R +G LS AAD +GKI I+AD G
Sbjct: 1 PRSLLTGEEGWTTLQLTGSR--LLPPGSVRRAVGLLSRA---AADGVGKIRILAD--AGG 53
Query: 336 AVFDLPEEIAKELLNKQIPPG 356
AVFDLPEEIAKELL K G
Sbjct: 54 AVFDLPEEIAKELLAKSDLDG 74
|
This subfamily corresponds to the Gu C-terminal (GUCT)-like domain of Hera and similar proteins. Thermus thermophilus Hera is a DEAD box helicase that binds fragments of 23S rRNA and RNase P RNA via its C-terminal domain. It contains a helicase core that harbors two RecA-like domains termed RecA_N and RecA_C, a dimerization domain (DD), and a C-terminal RNA-binding domain (RBD) that reveals a compact, RRM-like fold and shows sequence similarity with GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and plant DEAD-box ATP-dependent RNA helicase 7 (RH7 or PRH75). Length = 74 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 11/120 (9%)
Query: 87 KGGKTIVFTQTKRDADEVSLALTSI--------IASEALHGD--ISQHQRERTLNGFRQG 136
+ IVFT+ + A+E+ L I I + GD +SQ +++ ++ FR+G
Sbjct: 365 GDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG 424
Query: 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196
++ VLVAT V GLDIP VDL+I YE + R GRTGR ++G +++ T R
Sbjct: 425 EYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-KRKGRVVVLVTEGTR 483
|
Length = 542 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 9e-15
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 22/131 (16%)
Query: 87 KGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD--------ISQHQRERTLNGFRQGK 137
+ IVFTQ + A+++ L I + G +SQ ++ L+ FR G+
Sbjct: 364 PDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE 423
Query: 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPET-FVHRSGRTGRAGKEGTA-ILM----- 190
F VLV+T VA GLDIP+VDL+I YE P E + R GRTGR +EG +L+
Sbjct: 424 FNVLVSTSVAEEGLDIPSVDLVIFYE-PVPSEIRSIQRKGRTGR-QEEGRVVVLIAKGTR 481
Query: 191 ----FTSSQRR 197
+ SS+R+
Sbjct: 482 DEAYYWSSRRK 492
|
Length = 773 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 8e-14
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 2/165 (1%)
Query: 38 SRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQT 97
R+Y + L + I+ + K + L+ +A+G KT++F
Sbjct: 233 EREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASD 292
Query: 98 KRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157
A E++ + EA+ G+ + +RE L FR G VLV V G+DIP+ D
Sbjct: 293 VEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDAD 352
Query: 158 LIIHYELPNDPETFVHRSGRTGRA--GKEGTAILMFTSSQRRTVR 200
++I F+ R GR R GKE T L ++
Sbjct: 353 VLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGE 397
|
Length = 442 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 3e-13
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNI 48
ML +GFE+ + IL+ LP RQ++LFSATMP V+ L+RK+L NP+ I
Sbjct: 155 MLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 86 AKGGKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144
I++ T++ +E++ L + I++ A H +S +RER F + V+VAT
Sbjct: 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVAT 287
Query: 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202
+ G+D P+V +IHY+LP E++ +GR GR G AIL+++ R R L
Sbjct: 288 NAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345
|
Length = 590 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 92 IVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150
I++ +++ +E++ L S I++ A H +S R F V+VAT+ G
Sbjct: 228 IIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMG 287
Query: 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193
+D PNV +IHY++P + E++ +GR GR G AIL+++
Sbjct: 288 IDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSP 330
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 87 KGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145
KG I++ +++ +++V+ +L ++ IA+ A H + R+ + F++ + V+VAT
Sbjct: 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV 284
Query: 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202
G++ P+V +IHY LP E++ SGR GR G L + + +R L
Sbjct: 285 AFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRL 341
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|240594 cd12937, GUCT_RH7_like, RNA-binding GUCT domain found in plant DEAD-box ATP-dependent RNA helicase 7 (RH7) and similar proteins | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-08
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 277 RSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQG 335
RSL+ +G+ TL L + S V L P + I + + AD + G
Sbjct: 1 RSLLTSHEGYTTLLLK----SNTPIRSPGYVWNALRRYLPEDIVESIKGMTLTADGK--G 54
Query: 336 AVFDLPEEIAKELLNKQIP-PGNTISKITKLP 366
AVFD+P E+ +E L+ + G T+ T+LP
Sbjct: 55 AVFDVPSELIEEFLSAWVDKRGVTLEVATELP 86
|
This subfamily corresponds to the Gu C-terminal (GUCT) domain of RH7 and similar proteins. RH7, also termed plant RNA helicase 75 (PRH75), is a new nucleus-localized member of the DEAD-box protein family from higher plants. It displays a weak ATPase activity which is barely stimulated by RNA ligands. RH7 contains an N-terminal KDES domain rich in lysine, glutamic acid, aspartic acid, and serine residues, seven highly conserved helicase motifs in the central region, a GUCT domain, and a C-terminal GYR domain harboring a large number of glycine residues interrupted by either arginines or tyrosines. RH7 is RNA specific and harbors two possible RNA-binding motifs, the helicase motif VI (HRIGRTGR) and the C-terminal glycine-rich GYR domain. Length = 86 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 90 KTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147
T++FT T+ A+ ++ L + E HG +S+ R ++G+ +VAT
Sbjct: 255 TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSL 314
Query: 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
G+DI ++DL+I P F+ R GR G
Sbjct: 315 ELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGH 347
|
Length = 814 |
| >gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 12/179 (6%)
Query: 13 ILENLPPKRQS-MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA 71
+LE L +L SAT+P ++K+ + K + + ++E+ E + I +
Sbjct: 147 VLEVLKDNDVPILLMSATLPKFLKEYAEKI-GYVEFNEPLDLKEERRFERHRFIKIESDK 205
Query: 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA---LHGDISQHQRER 128
+ + L L+ KGGK + T A E L E LH ++ R +
Sbjct: 206 VGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAK 265
Query: 129 ----TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183
L ++ + V+VAT V LDI + D++I P D + + R GR R G+
Sbjct: 266 KEAELLEEMKKNEKFVIVATQVIEASLDI-SADVMITELAPID--SLIQRLGRLHRYGR 321
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model [Mobile and extrachromosomal element functions, Other]. Length = 358 |
| >gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQ 135
+LS++ A+ + +V T TK+ A++++ L + I LH +I +R + R
Sbjct: 431 LLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL 490
Query: 136 GKFTVLVATDVAARGLDIPNVDLI-IHYELPNDPETFVHRSGRT-----GRAGK--EGTA 187
G+F VLV ++ GLD+P V L+ I L D E F+ RS R+ GRA + G
Sbjct: 491 GEFDVLVGINLLREGLDLPEVSLVAI---LDADKEGFL-RSERSLIQTIGRAARNVNGKV 546
Query: 188 ILM---FTSSQRRTVRSLER 204
I+ T S ++ + ER
Sbjct: 547 IMYADKITDSMQKAIEETER 566
|
All proteins in this family for wich functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 655 |
| >gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQ 135
+LS++ AK + +V T TK+ A++++ L + I LH DI +R + R
Sbjct: 435 LLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL 494
Query: 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT-----GRAGK--EGTAI 188
G+F VLV ++ GLD+P V L+ L D E F+ RS R+ GRA + G I
Sbjct: 495 GEFDVLVGINLLREGLDLPEVSLVA--ILDADKEGFL-RSERSLIQTIGRAARNVNGKVI 551
Query: 189 L---MFTSSQRRTVRSLER 204
L T S ++ + ER
Sbjct: 552 LYADKITDSMQKAIDETER 570
|
Length = 663 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKL 37
+L +GF +D+E IL LPP RQ +L SAT+P ++ L
Sbjct: 133 LLDMGFGDDLEEILSRLPPDRQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|233032 TIGR00580, mfd, transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF----V 172
HG +++++ E + F +G+F VLV T + G+DIPN + II + F +
Sbjct: 692 AHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII----IERADKFGLAQL 747
Query: 173 HR-SGRTGRAGKEGTAILMFTSSQRRTVRSLER 204
++ GR GR+ K+ A L++ + T + +R
Sbjct: 748 YQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKR 780
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families [DNA metabolism, DNA replication, recombination, and repair]. Length = 926 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 32/196 (16%)
Query: 83 TVYAKG--GKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFT 139
T +KG G+TIVFT ++R E++ ALT + + H + +R+ F +
Sbjct: 433 TESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA 492
Query: 140 VLVATDVAARGLDIPNVDLIIH-YELPND---PETFVHRSGRTGRAG--KEGTAILM--- 190
+V T A G+D P +I + + F GR GR G L+
Sbjct: 493 AVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552
Query: 191 ---FTSSQRRTVRSLERDVGCKFEFVSPP---VVEDVLESSAEQVVAT---------LNG 235
+ +S T E +V K S P +VE E E V+A+ +
Sbjct: 553 GKKYHASMEET----EDEVAFKL-LESEPEPVIVEYDEEDEEENVLASAGVTNSLSVIER 607
Query: 236 VHPESVEFFTPTAQRL 251
V+ + + L
Sbjct: 608 VNSLMLGAAFDPKKAL 623
|
Length = 830 |
| >gnl|CDD|224118 COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS-- 175
HG + + + E + F G++ VLV T + G+DIPN + II + R+
Sbjct: 836 HGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTII-----------IERADK 884
Query: 176 ----------GRTGRAGKEGTAILMFTSSQRRTVRSLER 204
GR GR+ K+ A ++ + T + +R
Sbjct: 885 FGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKR 923
|
Length = 1139 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-06
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNID 49
+L GF + +E +L+ LP Q +L SAT P ++ L +L++P+ ID
Sbjct: 141 LLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFID 189
|
Length = 201 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 99 RDADEVSLALTSIIASEA---LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155
+ A+ + L LHG + ++E + FR+G+ +LVAT V G+D+PN
Sbjct: 467 KAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526
Query: 156 VDLIIHYELPNDPETF----VHR-SGRTGRAGKEGTAILMF-----TSSQRR 197
+++ D E F +H+ GR GR + +L++ S+++R
Sbjct: 527 ATVMVIE----DAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKR 574
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 17/180 (9%)
Query: 13 ILENLPPKRQS-MLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA 71
+LE L +L SAT+P ++K+ + K + + + + A IK+ +
Sbjct: 146 VLEVLKDNDVPILLMSATLPKFLKEYAEKI-GYVEENEPLDLKPNERAPFIKIESDKV-- 202
Query: 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEA---LHGDISQHQRER 128
+ + L L+ KGG + T A E L E +H ++ R +
Sbjct: 203 -GEISSLERLLEFIKKGGSVAIIVNTVDRAQEFYQQLKEKGPEEEIMLIHSRFTEKDRAK 261
Query: 129 -----TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183
L + KF V+VAT V LDI +VD++I P D + + R GR R G+
Sbjct: 262 KEAELLLEFKKSEKF-VIVATQVIEASLDI-SVDVMITELAPID--SLIQRLGRLHRYGE 317
|
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I. Length = 353 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 19/170 (11%)
Query: 68 STTATSKRTILSDLITVYAKGG-KTIVFTQTKRDADEVSLALTSIIASEALHGDISQH-- 124
+ S L+ L + + G +T+VF ++++ +V L S G
Sbjct: 285 ESIRRSALAELATLAALLVRNGIQTLVFFRSRK---QVELLYLSPRRRLVREGGKLLDAV 341
Query: 125 ----------QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET-FVH 173
+R R F++G+ ++AT+ G+DI ++D +I Y P F
Sbjct: 342 STYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQ 401
Query: 174 RSGRTGRAGKEGTAILMFTSS--QRRTVRSLERDVGCKFEFVSPPVVEDV 221
R+GR GR G+E +++ S +R E + F V V+D
Sbjct: 402 RAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLETGFGPVESVRVDDN 451
|
Length = 851 |
| >gnl|CDD|224121 COG1200, RecG, RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 99 RDADEVSLALTSIIASEA---LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155
+ A+E+ L S + +HG + +++ + F++G+ +LVAT V G+D+PN
Sbjct: 492 QAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPN 551
Query: 156 VDLIIHYELPNDPETF----VH--RSGRTGRAGKEGTAILMFTS 193
+++ + E F +H R GR GR + +L++
Sbjct: 552 ATVMVIE----NAERFGLAQLHQLR-GRVGRGDLQSYCVLLYKP 590
|
Length = 677 |
| >gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 87 KGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145
+G I++ ++ ++ + L S I++ A H + R F++ ++VAT
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV 294
Query: 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 191
G++ PNV ++H+++P + E++ +GR GR G A+L +
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340
|
Length = 607 |
| >gnl|CDD|182649 PRK10689, PRK10689, transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 21/108 (19%)
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII-----HYELPNDPETFV 172
HG + + + ER +N F +F VLV T + G+DIP + II H+ L +
Sbjct: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ-----L 896
Query: 173 HR-SGRTGRAGKEGTAIL-------MFTSSQRR--TVRSLERDVGCKF 210
H+ GR GR+ + A L M T +Q+R + SLE D+G F
Sbjct: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE-DLGAGF 943
|
Length = 1147 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
HG +S+ QR T + G+ +VAT G+D+ VDL+I P + + R GR
Sbjct: 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGR 367
Query: 178 TGRAGKEGTAILMFTSSQRRTVRS---LERDVGCKFEFVSPPVVEDVLESSAEQVVATLN 234
G + L F ++R V S +E + E ++PP + L+ A+Q VA
Sbjct: 368 AGHQVGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPP--HNPLDVLAQQTVAAA- 424
Query: 235 GVHPESVEFFTPTAQR 250
+ V+ + +R
Sbjct: 425 AMDALQVDEWYSRVRR 440
|
Length = 1490 |
| >gnl|CDD|235514 PRK05580, PRK05580, primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 7e-04
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 22/80 (27%)
Query: 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNV--------DLIIHYELPNDP----ETF--- 171
E+ L F +G+ +L+ T + A+G D PNV DL + D TF
Sbjct: 470 EQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS---PDFRASERTFQLL 526
Query: 172 --VHRSGRTGRAGKEGTAIL 189
V +GR GRA K G ++
Sbjct: 527 TQV--AGRAGRAEKPGEVLI 544
|
Length = 679 |
| >gnl|CDD|226583 COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 122 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL-IIHYELPN-DPETFVHRSGRTG 179
QH++E+ + FR GK T+L+ T + RG+ PNVD+ ++ E V +GR G
Sbjct: 341 DQHRKEK-VEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVG 399
Query: 180 RAGKEGTAILMF 191
R+ + T ++F
Sbjct: 400 RSLERPTGDVLF 411
|
Length = 441 |
| >gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 19/145 (13%)
Query: 59 AEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRDADEVSLA----LTSIIA 113
G + +A+++ +L+DL+ A+G +T+ F +++R A+ V+ L +
Sbjct: 244 LTGENGAPVRRSASAEAADLLADLV---AEGARTLTFVRSRRGAELVAAIARRLLGEVDP 300
Query: 114 SEALH------GDISQHQR--ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP 165
A G + + +R ER L R G+ + T+ G+DI +D ++ P
Sbjct: 301 DLAERVAAYRAGYLPEDRRELERAL---RDGELLGVATTNALELGVDISGLDAVVIAGFP 357
Query: 166 NDPETFVHRSGRTGRAGKEGTAILM 190
+ ++GR GR G+ +L+
Sbjct: 358 GTRASLWQQAGRAGRRGQGALVVLV 382
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. Length = 742 |
| >gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 0.001
Identities = 43/113 (38%), Positives = 59/113 (52%), Gaps = 13/113 (11%)
Query: 86 AKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144
AKG + +V T TKR A++++ L + I LH DI +R + R G+F VLV
Sbjct: 444 AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI 503
Query: 145 DVAARGLDIPNVDLI-IHYELPNDPETFVHRSGRT-----GRAGK--EGTAIL 189
++ GLDIP V L+ I L D E F+ RS R+ GRA + G IL
Sbjct: 504 NLLREGLDIPEVSLVAI---LDADKEGFL-RSERSLIQTIGRAARNVNGKVIL 552
|
Length = 652 |
| >gnl|CDD|215597 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 92 IVFTQTKRDADEVSLALTSIIASEAL-HGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150
I++ ++ D ++V+ L A HG + QR + + + ++ AT G
Sbjct: 684 IIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743
Query: 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194
++ P+V +IH+ LP E + GR GR G+ + +L ++ S
Sbjct: 744 INKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYS 787
|
Length = 1195 |
| >gnl|CDD|236794 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.002
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETF----V 172
LHG + +++ + F+ G+ +LVAT V G+D+PN +++ + E F +
Sbjct: 511 LHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIE----NAERFGLAQL 566
Query: 173 H--RSGRTGRAGKEGTAILM 190
H R GR GR + +L+
Sbjct: 567 HQLR-GRVGRGAAQSYCVLL 585
|
Length = 681 |
| >gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 21/57 (36%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 389 RGGGSRFSRGGARGGARGGGSMDRRGFRSSRSWGSDDEDGFSSSRGGRSFRSGNNRG 445
GGG RGG RGG GGG G R G G GGR G G
Sbjct: 2 MGGGFGGGRGGGRGG-GGGGGRGGGGRGGGRGGGRG--RGRGGGGGGRGGGGGGGPG 55
|
Length = 293 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.97 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.97 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.96 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.96 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.96 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.95 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.95 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.95 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.94 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.94 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.93 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.93 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.93 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.91 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.91 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.91 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.9 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.9 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.89 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.89 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.89 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.88 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.88 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.87 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.86 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.86 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.85 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.85 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.85 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.84 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.83 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.81 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.8 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.8 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.8 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.78 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.77 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.77 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.77 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.77 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.76 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.76 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.75 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.75 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.75 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.74 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.73 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.72 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.72 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.72 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.69 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.68 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.67 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.66 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.66 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.64 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.64 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.63 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.61 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.6 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.58 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.54 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.53 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.51 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.51 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.51 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.49 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.47 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.46 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.45 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.45 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.44 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.43 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.43 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.42 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.39 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.34 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.33 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.32 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.31 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.29 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.25 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.25 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.24 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.21 | |
| PF08152 | 97 | GUCT: GUCT (NUC152) domain; InterPro: IPR012562 Th | 99.21 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.17 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.17 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.05 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.04 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 98.94 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.91 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 98.9 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.87 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 98.86 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 98.83 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 98.83 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 98.79 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 98.79 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 98.78 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.76 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.69 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 98.65 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 98.58 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 98.53 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 98.52 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.51 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 98.45 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 98.44 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 98.42 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 98.42 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.38 | |
| PF03880 | 74 | DbpA: DbpA RNA binding domain ; InterPro: IPR00558 | 98.35 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 98.29 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 98.27 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 98.27 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.22 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 98.2 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.2 | |
| PTZ00110 | 545 | helicase; Provisional | 98.19 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 98.15 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 98.1 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 98.06 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.06 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 97.87 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 97.85 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 97.84 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 97.83 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.8 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 97.8 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 97.79 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 97.79 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 97.79 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 97.77 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 97.77 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 97.75 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 97.73 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 97.72 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.68 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 97.68 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 97.59 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 97.53 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 97.5 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 97.46 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 97.33 | |
| KOG3973 | 465 | consensus Uncharacterized conserved glycine-rich p | 97.31 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 97.26 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 97.26 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 97.18 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 97.17 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 97.1 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 97.03 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 96.99 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 96.95 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 96.82 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 96.8 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 96.74 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 96.7 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 96.66 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 96.59 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 96.54 | |
| KOG3973 | 465 | consensus Uncharacterized conserved glycine-rich p | 96.49 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 96.45 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 96.33 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 96.32 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 96.26 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 96.25 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 96.12 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 95.99 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 95.98 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 95.94 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 95.75 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 95.61 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 95.43 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 95.42 | |
| PTZ00424 | 401 | helicase 45; Provisional | 95.19 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 95.13 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 95.02 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 94.95 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 94.82 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 94.62 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 94.43 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 94.38 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 94.11 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 94.03 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 93.82 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 93.75 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 93.62 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 93.31 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 93.25 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 93.03 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 91.34 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 90.89 | |
| PF12683 | 275 | DUF3798: Protein of unknown function (DUF3798); In | 90.73 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 90.56 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 90.51 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 90.44 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 90.4 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 90.17 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 89.58 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 89.38 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 89.31 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 89.27 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 88.77 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 88.41 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 87.1 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 86.71 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 85.94 | |
| KOG0116 | 419 | consensus RasGAP SH3 binding protein rasputin, con | 84.46 | |
| PF10593 | 239 | Z1: Z1 domain; InterPro: IPR018310 This entry repr | 84.37 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 83.81 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 83.69 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 82.56 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 82.26 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 80.24 |
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=454.47 Aligned_cols=344 Identities=29% Similarity=0.479 Sum_probs=298.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||+|||.++++.|+..+|..+|+++||||||+.+..+++.|+.+|..|.+.. .......+.+.++.+....|.+.|..
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~--~~~~~~~i~q~~~~v~~~~k~~~L~~ 238 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVR 238 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccC--ccccCCceEEEEEEechhhHHHHHHH
Confidence 7899999999999999999999999999999999999999999998887653 23345667788887777788888888
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... ...++||||+|+..|+.+++.|.. ++.+..+||+|++.+|++++++|++|+++|||||+++++|||+|+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 88765 457999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHccC-Cc
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGV-HP 238 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~-~~ 238 (494)
||||+|.++++|+||+|||||+|+.|.+++|+.+.|...++.|++.++.+++++.+|..+++.+.....+...+... ..
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 397 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLES 397 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999888888877776543 33
Q ss_pred cchhhhhHHHHHHHhh-----cCHHHHHHHHHHHcCCCCC----C-------C---Ccc-----------------c--c
Q 011052 239 ESVEFFTPTAQRLIEE-----KGTDALAAALAQLSGFSRP----P-------S---SRS-----------------L--I 280 (494)
Q Consensus 239 ~~~~~f~~~a~~l~~~-----~~~~~l~aal~~~~g~~~~----~-------~---~rs-----------------l--~ 280 (494)
+.++.|.+.++++.++ .+++.++++|+.+.--..+ . + .+. . .
T Consensus 398 ~~~~~~~~~~~~l~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (629)
T PRK11634 398 SDLDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPR 477 (629)
T ss_pred hhHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 4567778888888754 6789999999988522111 0 0 000 0 0
Q ss_pred c---CCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHHHHHhhcCC
Q 011052 281 N---HEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 281 ~---~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~ 354 (494)
. ...+|++++++.++ ++++.|++|+++|++..++...+||+|+|++++ ||||+|++.++++++.+..
T Consensus 478 ~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~----s~v~~~~~~~~~~~~~~~~ 547 (629)
T PRK11634 478 RERRDVGDMQLYRIEVGR---DDGVEVRHIVGAIANEGDISSRYIGNIKLFASH----STIELPKGMPGEVLQHFTR 547 (629)
T ss_pred cccccCCCCEEEEEeccc---ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCc----eEEEcChhhHHHHHHHhcc
Confidence 0 12269999999998 899999999999999999999999999999999 6999999999999987654
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-44 Score=368.44 Aligned_cols=206 Identities=45% Similarity=0.725 Sum_probs=192.7
Q ss_pred CCCCChHHHHHHHHHhC-CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011052 1 MLAVGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~l-p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (494)
||||||+++|+.|+.++ ++.+|++++|||+|.+++.++..||++|..|++..........++.|....+++..|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 56679999999999999999999999999999876556677888999999999999999999
Q ss_pred HHHHHhc--cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcc
Q 011052 80 DLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 80 ~ll~~~~--~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v 156 (494)
.+|..+. +..|+||||+|++.|++|+..|.+ .+.+.+|||+.+|.+|+.+|+.|++|++.||||||||+||||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9999885 567999999999999999999997 6999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh
Q 011052 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (494)
++|||||+|.++++|+||+|||||+|++|.+++|++..+......+.+.+
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988777776554
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=358.54 Aligned_cols=217 Identities=43% Similarity=0.733 Sum_probs=198.0
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCccc-HHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~ 79 (494)
||||||.++|+.|+..+|+++|+++||||||..+..+++.|+++|..|.+...........++|+++.+...+ |.++|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999888763334447788999999998766 999999
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.+++... ..++||||+|+..|+.++..|.. ++.+..|||+|+|.+|.++++.|++|+++||||||+++||||||+|++
T Consensus 266 ~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 9998764 35899999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChh-hHHHHHHHHHHhCCCce-ecCCCCH
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFE-FVSPPVV 218 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~-~~~~p~~ 218 (494)
|||||+|.+++.|+||+|||||+|++|.+++|+.+. |...+..+++.+...+. ...+|..
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~ 406 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLD 406 (513)
T ss_pred eEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcc
Confidence 999999999999999999999999999999999986 89999999999876655 3444443
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=317.30 Aligned_cols=213 Identities=35% Similarity=0.603 Sum_probs=198.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCccc-HHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~ 79 (494)
||+.||.+++-.|++.+|+.+|++++|||+|.+|.+...+|+.+|+.|-+. ..+.+.+.|+++|+.+..++ |.+.|+
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvk--rdeltlEgIKqf~v~ve~EewKfdtLc 258 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVK--RDELTLEGIKQFFVAVEKEEWKFDTLC 258 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEe--cCCCchhhhhhheeeechhhhhHhHHH
Confidence 789999999999999999999999999999999999999999999988553 45566778999999988776 999999
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
++.+.+. -.+++|||||+..++.+.+.++. .+.+..+||+|+|++|+++++.||+++.+|||+||+.+||+|+|+|++
T Consensus 259 dLYd~Lt-ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 259 DLYDTLT-ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHhhhhe-hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 9988764 47999999999999999999986 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (494)
|||||+|.+.+.|+||+||.||.|++|.++-|+...|.+.++.+|+++...+.+++..
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccch
Confidence 9999999999999999999999999999999999999999999999999888777654
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=333.10 Aligned_cols=270 Identities=34% Similarity=0.495 Sum_probs=221.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcC-CCcEEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (494)
+|||||++||+.|+..+|+.+|++|||||+|++|+++++..|+ +|+.|++++.....+.+.+++-|+.++...+..+|.
T Consensus 242 lLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~ 321 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLY 321 (543)
T ss_pred hhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHH
Confidence 5899999999999999999999999999999999999998887 589999998888888999999999888888888888
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.+|+.+....++||||+|...+..+++.|.. .++|..+||+++|..|..+..+|++.+.-|||||||++||+|+|+|++
T Consensus 322 ~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~ 401 (543)
T KOG0342|consen 322 TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDW 401 (543)
T ss_pred HHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceE
Confidence 9998886669999999999999999999986 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCH-HHHHHHHHHHHHHHHccCC
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVH 237 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~-~~i~~~~~~~~~~~l~~~~ 237 (494)
||+||+|.++++||||+|||||.|++|.+++++.|+|..++++|+ ..++++.+.|.. .+.++...+.++..-...+
T Consensus 402 VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~~~~~~~v~~~~~~li~~~y~~~ 478 (543)
T KOG0342|consen 402 VVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFPPLKPEDVQSQLEKLISKNYSLK 478 (543)
T ss_pred EEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCCCCCHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999998 445554444433 3344444444444222222
Q ss_pred ccchhhhhHHHHHH-------HhhcCHHHHHHHHHHHcCCCCCC
Q 011052 238 PESVEFFTPTAQRL-------IEEKGTDALAAALAQLSGFSRPP 274 (494)
Q Consensus 238 ~~~~~~f~~~a~~l-------~~~~~~~~l~aal~~~~g~~~~~ 274 (494)
....+.|..+...+ ......-.|+ ++++.+|++.||
T Consensus 479 ~aak~ay~syl~~y~s~slk~~~~~~~l~La-~~~~s~gf~~pp 521 (543)
T KOG0342|consen 479 EAAKEAYKSYLGAYNSHSLKDIFNVNLLELA-AVAKSFGFSVPP 521 (543)
T ss_pred HHHHHHHHhhhhhccchhhhcccccchhhHH-HHHHHcCCCCCc
Confidence 22222222221111 1112233456 888999998876
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=321.59 Aligned_cols=211 Identities=36% Similarity=0.600 Sum_probs=198.9
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
+|||-|.+++..||+.+|.++|++|||||||+.+.++....+++|+.|.+. ....+.++++++|+.++...|...|..
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s--~ky~tv~~lkQ~ylfv~~k~K~~yLV~ 293 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVS--SKYQTVDHLKQTYLFVPGKDKDTYLVY 293 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEecc--chhcchHHhhhheEeccccccchhHHH
Confidence 589999999999999999999999999999999999999999999988764 456678889999999999999999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
+++.. .+..+||||+|...++.++-.|.. ++.+..|||+|+|..|...++.|+++.++||||||+++||+|+|.|++|
T Consensus 294 ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 294 LLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 99876 568999999999999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
||||+|.+..+||||+|||+|+|++|.+|.|++..|.+.+.+||..++.+.....
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~ 427 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYK 427 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccC
Confidence 9999999999999999999999999999999999999999999999998875543
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=329.07 Aligned_cols=199 Identities=41% Similarity=0.646 Sum_probs=182.4
Q ss_pred CCCCChHHHHHHHHHhCCC---C----------------------CcEEEEeecCChHHHHHHHHHcCCCcEEEeccccc
Q 011052 1 MLAVGFEEDVELILENLPP---K----------------------RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQD 55 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~---~----------------------~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~ 55 (494)
|+||||++|+..||.++|. . +|+++||||||+.+..+++.||.+|+.+.+- ..
T Consensus 408 miDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig--~~ 485 (673)
T KOG0333|consen 408 MIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG--SA 485 (673)
T ss_pred hhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec--cC
Confidence 8999999999999999983 1 7999999999999999999999999998764 34
Q ss_pred cccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHcccc
Q 011052 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 134 (494)
Q Consensus 56 ~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 134 (494)
.+..+.+++..+.+...+|...|..+|..+ ...++|||+|+++.|+.|++.|.+ ++.|+.|||+-+|+||+.+|+.|+
T Consensus 486 gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr 564 (673)
T KOG0333|consen 486 GKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFR 564 (673)
T ss_pred CCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHH
Confidence 455677888888888888999999999876 568999999999999999999997 899999999999999999999999
Q ss_pred CCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 135 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 135 ~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
.+..+||||||+|+||||||+|.+|||||++.++++|+||+|||||+|+.|++++|+++.+......|
T Consensus 565 ~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydL 632 (673)
T KOG0333|consen 565 EGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDL 632 (673)
T ss_pred hcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999885544333
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=329.94 Aligned_cols=285 Identities=31% Similarity=0.507 Sum_probs=245.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|++|||..+++.|+..+|+.+|+++||||+|+.+..++..++.+|..+.+.... ....++++++.++...|.+.|..
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~k~~~l~~ 235 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH---DLPAIEQRFYEVSPDERLPALQR 235 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC---CCCCeeEEEEEeCcHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999888765322 24557888888888889999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... ...++||||+|++.|+.+++.|.. ++.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|++++|
T Consensus 236 ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~V 314 (460)
T PRK11776 236 LLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAV 314 (460)
T ss_pred HHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeE
Confidence 88765 457899999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHccCCcc
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPE 239 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~ 239 (494)
||||+|.+.++|+||+|||||+|+.|.+++|+.+.|...++.+++.++.++++...|......
T Consensus 315 I~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~l~~~~~~~----------------- 377 (460)
T PRK11776 315 INYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNWEPLPSLSPLS----------------- 377 (460)
T ss_pred EEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCceecCCchhhcc-----------------
Confidence 999999999999999999999999999999999999999999999999888776665422100
Q ss_pred chhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCc
Q 011052 240 SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA 319 (494)
Q Consensus 240 ~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 319 (494)
..+ ....+.++.+..++ +.++.+.++.+.+........
T Consensus 378 -------------------------------~~~--------~~~~~~~l~i~~~~---~~~~~~~~~~~~~~~~~~~~~ 415 (460)
T PRK11776 378 -------------------------------GVP--------LLPEMVTLCIDGGK---KDKLRPGDILGALTGDAGLDG 415 (460)
T ss_pred -------------------------------ccc--------CCCCeEEEEEeccc---ccCCCccchHHHhhcccCCCh
Confidence 000 01236777777665 456678889999888877788
Q ss_pred cccccEEEeecCCcceeEEecCHHHHHHHHhhc
Q 011052 320 DEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352 (494)
Q Consensus 320 ~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~ 352 (494)
+++|.+.+.+.+ ++++++++.++..+...
T Consensus 416 ~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~ 444 (460)
T PRK11776 416 AQIGKINVTDFH----AYVAVERAVAKKALKKL 444 (460)
T ss_pred hhcCCccccccc----ceeecchhhHHHHHHHh
Confidence 889999988877 69999999888888653
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=306.13 Aligned_cols=204 Identities=37% Similarity=0.610 Sum_probs=186.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||||||+.+|.+||-.+.+++|++|.|||.|+.+.+++..|+++|..+- ++.-.-.....+++..+.....+|.+++..
T Consensus 379 MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~-vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~ 457 (629)
T KOG0336|consen 379 MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVY-VGSLDLVAVKSVKQNIIVTTDSEKLEIVQF 457 (629)
T ss_pred hhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEE-ecccceeeeeeeeeeEEecccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764 333333345667888888888899999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++..+.+..++||||..+..|+.|...|. +++.+..|||+-.|.+|+..++.|++|+++||||||+++||||+|+|+||
T Consensus 458 f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV 537 (629)
T KOG0336|consen 458 FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHV 537 (629)
T ss_pred HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhccee
Confidence 99999899999999999999999988887 58999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (494)
+|||+|.+++.|+||+|||||+|++|++++|++..|......|-+.
T Consensus 538 ~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 538 YNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred eccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877666443
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=311.80 Aligned_cols=212 Identities=33% Similarity=0.504 Sum_probs=194.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||||||.+.++.|+..+|+++|++|||||....++.+++..+++|..|.+.......++.+++++|+.++..+|+++|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 79999999999999999999999999999999999999999999999988755567788999999999999999999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
+|..+ ...+.|||+.|.++|..+++.+.+ ++++.+|||.|+|..|..++++|-....-||+|||+++||||+|.|+
T Consensus 307 FI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 307 FIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 99887 458999999999999999998874 78999999999999999999999998899999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh-HHHHHHHHHHhCCCceecC
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e-~~~l~~le~~~~~~~~~~~ 214 (494)
+||++|+|.++++||||+|||+|....|.++++++|.| ..++..|++.. ++++.+.
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~ 442 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIK 442 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhc
Confidence 99999999999999999999999999999999999998 45666776653 5555433
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=308.53 Aligned_cols=219 Identities=34% Similarity=0.511 Sum_probs=197.0
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
+|||||+.+++.||+.+|+++++-|||||+.+++.++++..++||+.|.+.......++..+..+|+.|++..|...|.+
T Consensus 169 LldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~ 248 (567)
T KOG0345|consen 169 LLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVH 248 (567)
T ss_pred HhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999988655554578889999999999999999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
+|..+ ...++|||.+|...++..+..+.. ...+..+||.|.+.+|.++++.|++..-.+|+||||++||||||+|+
T Consensus 249 ~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD 327 (567)
T KOG0345|consen 249 LLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGID 327 (567)
T ss_pred HHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCce
Confidence 99885 568999999999999999988874 57899999999999999999999998888999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~ 220 (494)
+|||||+|.++..|+||+|||+|+|+.|.+++|+.+.|..++..+.-.-...++....+....
T Consensus 328 ~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~e~~~~ 390 (567)
T KOG0345|consen 328 LVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDTEKASL 390 (567)
T ss_pred EEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcccccch
Confidence 999999999999999999999999999999999999998888877655445555555544443
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=304.71 Aligned_cols=202 Identities=35% Similarity=0.576 Sum_probs=182.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc---ccHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TSKRTI 77 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~---~~k~~~ 77 (494)
||+.||.++|.+|++.+|+++|++||||||..+|+.++.-.|++|+.|-+. ++..++..+.+.|+...+ .++..+
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd--~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVD--PNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeC--CccccchhhhHHHheeccccccccHHH
Confidence 899999999999999999999999999999999999999999999998764 344556666666665443 357778
Q ss_pred HHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcc
Q 011052 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 78 L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v 156 (494)
|..++.... ..++|||+.|++.|..+.-.|-- ++.+.-|||.|+|.||...+++|++.+++||||||+|+|||||+.|
T Consensus 417 l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 417 LASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred HHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 888887663 58999999999999999888764 7899999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH
Q 011052 157 DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (494)
..||||++|.+.+.|+||+|||+|+|+.|.+++|+...|++.++.+-+.
T Consensus 496 ~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 496 QTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998766
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=286.11 Aligned_cols=210 Identities=30% Similarity=0.540 Sum_probs=198.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||+.-|.+-|++++..+|+++|++|||||+|-.++.+..++|++|..|++- ++.+...+.+||..+.+.+|...|..
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM---~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM---EELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh---hhhhhcchhhheeeechhhhhhhHHH
Confidence 688899999999999999999999999999999999999999999999885 45667889999999999999999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++..+. -.++|||||+...++.+|..+.+ ++.|..+|+.|.|++|.+++..|++|.|+.|||||.+.||||++.|++|
T Consensus 316 LfskLq-INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 316 LFSKLQ-INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHhc-ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 887773 47899999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
||||+|.+.++|+||+||.||.|..|.+|.+++-.|+..+..||+.++.+++.++
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip 449 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIP 449 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCC
Confidence 9999999999999999999999999999999999999999999999999887655
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=282.88 Aligned_cols=216 Identities=31% Similarity=0.507 Sum_probs=191.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||+-.|-++++.|.+.+|+.+|+++|||||.+.+..+..-..+.+....+.......+.+.+.+.|+.++...|...|.+
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~ 244 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVH 244 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHH
Confidence 68889999999999999999999999999999888765433333212222222445667788999999999999999999
Q ss_pred HHHHhcc--CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 81 LITVYAK--GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~--~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
+|..+.. ...++||++|..+|+.++..|+. .+.+..+|+.|+|.+|...+.+||.+..+||||||||+||+|||.|+
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 9988855 67899999999999999999997 79999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (494)
+|||||+|.++.+|+||+|||+|+|+.|.++.++++.|.+.++.||...+.++.+....
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999999999998765443
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=294.91 Aligned_cols=191 Identities=32% Similarity=0.573 Sum_probs=162.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+||||++||..|+..+...+|++|||||||..|+.+++..+-.|++|++-- .. ...-++.+..-.+..+.|.-.|.+
T Consensus 338 miDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGR-AG-AAsldViQevEyVkqEaKiVylLe 415 (610)
T KOG0341|consen 338 MIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGR-AG-AASLDVIQEVEYVKQEAKIVYLLE 415 (610)
T ss_pred HhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccc-cc-ccchhHHHHHHHHHhhhhhhhHHH
Confidence 8999999999999999999999999999999999999999999999998632 11 111222221112333445444444
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
.|+. ...++||||..+.+++.++++|- +++.++.+||+-.|++|...++.|+.|+.+||||||+++.|+|+|++.||
T Consensus 416 CLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHV 493 (610)
T KOG0341|consen 416 CLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHV 493 (610)
T ss_pred Hhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhh
Confidence 4443 34699999999999999999986 68999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
||||+|.+++.|+||+|||||.|++|.+.+|++...
T Consensus 494 INyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 494 INYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999999999999999999999999999999998764
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=306.75 Aligned_cols=206 Identities=34% Similarity=0.579 Sum_probs=182.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcC-CCcEEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (494)
||++||.+++..|+..+++++|+++||||+|.++..+++.++. +|..+.+... ......++++.+..+....|...|.
T Consensus 289 mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~-~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSL-DLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCC-ccccCCCeeEEEEEEechhHHHHHH
Confidence 7899999999999999999999999999999999999999886 4666655322 2233456777777777778888888
Q ss_pred HHHHHhc-cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 80 DLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 80 ~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
.++.... ...++||||+|++.|+.++..|.. ++.+..+||+|++.+|+.++++|++|+++|||||+++++|||+|+|+
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 8887764 567999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
+|||||+|.++++|+||+|||||+|+.|.+++|+++.+...++.|.+.+.
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~ 497 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLR 497 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887777766554
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=299.54 Aligned_cols=210 Identities=39% Similarity=0.611 Sum_probs=188.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+++||..++..|+..++..+|+++||||+++++..++.+++.+|..+.+.. .......+.+++..+....|.++|..
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVAR--RNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEec--ccccccceeEEEEEcCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999998877643 22334567777777777778888887
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... ...++||||+|++.|+.+++.|.. ++.+..+||+|++.+|.+++++|++|+++|||||+++++|||+|+|++|
T Consensus 239 l~~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 239 MIGKG-NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHcC-CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 77653 457999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceec
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (494)
|||++|.++++|+||+|||||+|..|.+++|+...|...++.+++.+..++++.
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~~ 371 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRI 371 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999887766443
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=296.84 Aligned_cols=210 Identities=34% Similarity=0.559 Sum_probs=187.6
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH
Q 011052 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~--~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (494)
|+++||..+++.|++.+|. .+|+++||||+|..+..++..++.+|..+.+.. .......+.+.++.+....|...|
T Consensus 169 l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~--~~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 169 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEP--EQKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcC--CCcCCCceeEEEEeCCHHHHHHHH
Confidence 6889999999999999984 578899999999999999999999998887643 233445667766666667788888
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
..++... ...++||||+|+..|+.+++.|.. ++.+..+||+|++.+|.+++++|++|+++||||||++++|||+|+|+
T Consensus 247 ~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~ 325 (423)
T PRK04837 247 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVT 325 (423)
T ss_pred HHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccC
Confidence 8888764 457999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceec
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (494)
+|||||+|.+.+.|+||+|||||.|+.|.+++|+.+.|...+..+++.++..++..
T Consensus 326 ~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 326 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999999999999999999888776543
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=279.80 Aligned_cols=210 Identities=34% Similarity=0.605 Sum_probs=197.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||.-||+++|..|++++|++.|++++|||+|.|+..+.++|+.+|..|.+.. ...+...++++|+.+....|...|.+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk--~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKK--DELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecc--hhhhhhheeeeeeeccccccccHHHH
Confidence 7899999999999999999999999999999999999999999999987653 34567889999999988889999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
+.+ .-.+++|||||++.+..+...|.. .+.+.++|++|.+.+|+.++..|+.|..+|||+|+.++||+|+.++..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 887 347999999999999999999975 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (494)
|||++|...+.|+||+||+||.|++|.++.+++..+...++.+|++++..+++++.
T Consensus 336 inydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~ 391 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391 (397)
T ss_pred eeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceeccc
Confidence 99999999999999999999999999999999999999999999999999887754
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=276.94 Aligned_cols=214 Identities=31% Similarity=0.497 Sum_probs=190.7
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (494)
.||.++-..|...+|++.|+++||||....+..++.+.+.++..+.+. .+.....+|+++|+.|.. .+|.++|..+.
T Consensus 248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk--~eel~L~~IkQlyv~C~~~~~K~~~l~~ly 325 (477)
T KOG0332|consen 248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILK--REELALDNIKQLYVLCACRDDKYQALVNLY 325 (477)
T ss_pred ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeee--hhhccccchhhheeeccchhhHHHHHHHHH
Confidence 589999999999999999999999999999999999999999888764 345556788888887765 57999988876
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
... .-+++||||.|++.|..++..|.. +..|..|||+|.-.+|..++++||.|..+|||+|+|++||||++.|++|||
T Consensus 326 g~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN 404 (477)
T KOG0332|consen 326 GLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN 404 (477)
T ss_pred hhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe
Confidence 655 347999999999999999999986 899999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhcccCCCCCCceEEEecChhh-HHHHHHHHHHhCCCceecCCCCHHH
Q 011052 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~G~~g~~i~l~~~~e-~~~l~~le~~~~~~~~~~~~p~~~~ 220 (494)
||+|. |.++|+||+|||||.|+.|.++-|+...+ ...+..|+++.+.++....+...+|
T Consensus 405 ydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E 470 (477)
T KOG0332|consen 405 YDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDE 470 (477)
T ss_pred cCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHH
Confidence 99994 78999999999999999999999987654 5678899999998888776644444
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=303.38 Aligned_cols=208 Identities=34% Similarity=0.547 Sum_probs=185.8
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH
Q 011052 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~--~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (494)
|+++||..+|+.|++.+|. ++|+++||||++..+..++..++.+|..+.+.. .......+.+.++.+....|...|
T Consensus 171 lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 171 MFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVET--ETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecc--ccccccceeEEEEecCHHHHHHHH
Confidence 6889999999999999987 789999999999999999999999887665432 223445677777777777788887
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
..++... ...++||||+|++.|+.|++.|.+ ++.+..+||+|++.+|++++++|++|+++||||||++++|||+|+|+
T Consensus 249 ~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 249 LGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 7777653 467999999999999999999986 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCce
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~ 211 (494)
+|||||+|.++++|+||+|||||.|++|.+++|+.+.+...+..+++.+..+++
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~ 381 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIP 381 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999899999888776654
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=290.27 Aligned_cols=201 Identities=41% Similarity=0.660 Sum_probs=176.3
Q ss_pred CCC-CChHHHHHHHHHhCCC----CCcEEEEeecCChHHHHHHHHHcCC-CcEEEeccccccccccceEEEEEEcCcccH
Q 011052 1 MLA-VGFEEDVELILENLPP----KRQSMLFSATMPSWVKKLSRKYLDN-PLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 1 mL~-~GF~~~i~~Il~~lp~----~~q~ll~SATlp~~i~~l~~~~l~~-p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
||| |||.++|.+|+.++.. ++|++|||||.|..+..++..|+.+ ...+.+. .......++.+..+.+...+|
T Consensus 238 MlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--rvg~~~~ni~q~i~~V~~~~k 315 (482)
T KOG0335|consen 238 MLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG--RVGSTSENITQKILFVNEMEK 315 (482)
T ss_pred hhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe--eeccccccceeEeeeecchhh
Confidence 899 9999999999998753 7999999999999999999999986 4444432 234456788888888888888
Q ss_pred HHHHHHHHHHhc---cCC-----cEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 75 RTILSDLITVYA---KGG-----KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 75 ~~~L~~ll~~~~---~~~-----~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
...|.+++.... ... +++|||+|++.|.+++..|.. ++++..+||+.+|.+|+++++.|++|++.+||||+
T Consensus 316 r~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~ 395 (482)
T KOG0335|consen 316 RSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATN 395 (482)
T ss_pred HHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEeh
Confidence 888888876543 233 899999999999999999986 89999999999999999999999999999999999
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHH
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le 203 (494)
+++||||+|+|+||||||+|.+.++|+||+|||||+|..|.++.|+........+.|-
T Consensus 396 VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~ 453 (482)
T KOG0335|consen 396 VAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALV 453 (482)
T ss_pred hhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHH
Confidence 9999999999999999999999999999999999999999999999966655444443
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-32 Score=283.93 Aligned_cols=208 Identities=31% Similarity=0.540 Sum_probs=184.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCCh-HHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC-cccHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPS-WVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~-~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L 78 (494)
||++||..+++.|...++...|+++||||++. .+..++..++.+|..+.+... ......+.++++.+. ...|.++|
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~~~k~~~l 236 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS--RRERKKIHQWYYRADDLEHKTALL 236 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC--cccccCceEEEEEeCCHHHHHHHH
Confidence 78999999999999999999999999999984 688899999999988876532 233455667666554 35688888
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
..++... ...++||||+|++.|+.+++.|.. ++.+..+||+|++.+|..++++|++|+++|||||+++++|||+|+|+
T Consensus 237 ~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 237 CHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 8887653 457999999999999999999986 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCce
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~ 211 (494)
+|||||+|.+.+.|+||+|||||+|..|.+++|++..|...+..+++++..++.
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999988766553
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=288.91 Aligned_cols=204 Identities=28% Similarity=0.458 Sum_probs=179.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+++||.+++..|+..++ ++|+++||||+|+.+..++..++.++..|.+.. .......+++..+.+....|...|.+
T Consensus 282 ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~--~~~~~~~v~q~~~~~~~~~k~~~l~~ 358 (518)
T PLN00206 282 MLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGN--PNRPNKAVKQLAIWVETKQKKQKLFD 358 (518)
T ss_pred HhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC--CCCCCcceeEEEEeccchhHHHHHHH
Confidence 789999999999999995 689999999999999999999999888777542 23345567777777777777777777
Q ss_pred HHHHhcc-CCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 81 LITVYAK-GGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 81 ll~~~~~-~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
++..... ..++||||+|+..|+.+++.|.. ++.+..+||+|++.+|..++++|++|+++|||||++++||||+|+|+
T Consensus 359 ~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 359 ILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVR 438 (518)
T ss_pred HHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCC
Confidence 7765432 35899999999999999999974 68899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
+|||||+|.++++|+||+|||||.|..|.+++|+++.+...+..+.+.+.
T Consensus 439 ~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~ 488 (518)
T PLN00206 439 QVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLK 488 (518)
T ss_pred EEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877777766544
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=264.71 Aligned_cols=205 Identities=26% Similarity=0.481 Sum_probs=188.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
||..||++|+..|.+.+|+..|.+|||||+.+.|..+-+.+|++|+.+.+.+. +...+..+.||++.|..++|..++..
T Consensus 182 llsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~-el~~~dqL~Qy~v~cse~DKflllya 260 (569)
T KOG0346|consen 182 LLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEG-ELPNPDQLTQYQVKCSEEDKFLLLYA 260 (569)
T ss_pred hhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccc-cCCCcccceEEEEEeccchhHHHHHH
Confidence 67899999999999999999999999999999999999999999999887643 33356889999999999999999998
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech--------------
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------------- 145 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-------------- 145 (494)
+++..--.+++|||+||.+.|..+.-.|+. +++.++|+|.||.+-|..++++|..|-++|+||||
T Consensus 261 llKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kg 340 (569)
T KOG0346|consen 261 LLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKG 340 (569)
T ss_pred HHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccc
Confidence 887766679999999999999999999998 79999999999999999999999999999999999
Q ss_pred ---------------------hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 146 ---------------------VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 146 ---------------------~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
-++||||+.+|..|||||+|.++..||||+|||+|++++|.++.|+.+.+..-...||.
T Consensus 341 k~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~ 420 (569)
T KOG0346|consen 341 KSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLES 420 (569)
T ss_pred cccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHH
Confidence 35899999999999999999999999999999999999999999999999875555555
Q ss_pred Hh
Q 011052 205 DV 206 (494)
Q Consensus 205 ~~ 206 (494)
..
T Consensus 421 ~~ 422 (569)
T KOG0346|consen 421 IL 422 (569)
T ss_pred HH
Confidence 44
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=279.93 Aligned_cols=208 Identities=34% Similarity=0.582 Sum_probs=185.1
Q ss_pred CCCCChHHHHHHHHHhCCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH
Q 011052 1 MLAVGFEEDVELILENLPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~--~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (494)
|++++|..++..|++.++. ++|+++||||++..+..+++.++.+|..+.+... ......+.+.++.+...+|..+|
T Consensus 249 l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~k~~~l 326 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE--NVASDTVEQHVYAVAGSDKYKLL 326 (475)
T ss_pred HHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC--cCCCCcccEEEEEecchhHHHHH
Confidence 4688999999999999975 5799999999999999999999999988766432 23344566666666667888888
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
..++... ...++||||++++.|+.+++.|.+ ++.+..+||++++.+|.++++.|++|+++|||||+++++|||+|+|+
T Consensus 327 ~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~ 405 (475)
T PRK01297 327 YNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGIS 405 (475)
T ss_pred HHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCC
Confidence 8887653 457999999999999999999986 78899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCce
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~ 211 (494)
+||+|++|.++++|+||+||+||.|+.|.+++|+.+.|...+..+++.++.+++
T Consensus 406 ~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 406 HVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred EEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999987764
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=267.73 Aligned_cols=200 Identities=35% Similarity=0.569 Sum_probs=176.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEE-EEcCcccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYA-ISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~-~~~~~~~k~~~L~ 79 (494)
|.+|||+.++..|..++.+++|+|+||||++..|..+++.+|.+|+.+.... .......|.+.. ++.....|+..|.
T Consensus 382 mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~--vgean~dITQ~V~V~~s~~~Kl~wl~ 459 (731)
T KOG0339|consen 382 MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGE--VGEANEDITQTVSVCPSEEKKLNWLL 459 (731)
T ss_pred hhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEee--hhccccchhheeeeccCcHHHHHHHH
Confidence 8899999999999999999999999999999999999999999998875432 223345555544 4445567888776
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.-|......+++|||+..+..+++|+..|. +++.+..+||+|.|.+|.++|.+|+++.+.||||||+++||+|||++..
T Consensus 460 ~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikT 539 (731)
T KOG0339|consen 460 RHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKT 539 (731)
T ss_pred HHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccce
Confidence 666666667899999999999999999998 5899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
|||||+-.+++.|.||+||+||+|..|++++++++.|....-.|
T Consensus 540 VvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~L 583 (731)
T KOG0339|consen 540 VVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHL 583 (731)
T ss_pred eecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHH
Confidence 99999999999999999999999999999999999997654444
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=267.42 Aligned_cols=212 Identities=33% Similarity=0.593 Sum_probs=183.9
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~ 79 (494)
|++.+|...+.++++.++++.|++++|||+|+++..+...++.+|..+.+.. .......+.++++.+.. ..+...+.
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKK--DELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCC--CCcccCCceEEEEecChHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999887765432 22234556666666554 33556666
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.++... ...++||||+|++.|+.+++.|.. .+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++
T Consensus 260 ~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 260 DLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 666543 457899999999999999999986 688999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (494)
||+|++|.+...|+||+||+||.|+.|.|++|+++.+...++.+++.+...++..++
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 999999999999999999999999999999999999999999999999888776544
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=264.94 Aligned_cols=207 Identities=30% Similarity=0.481 Sum_probs=174.7
Q ss_pred CCCCChHHHHHHHHHhC-------------CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEecccc-------------
Q 011052 1 MLAVGFEEDVELILENL-------------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQ------------- 54 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~l-------------p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~------------- 54 (494)
+||+||.+||+.|+..+ |+..|.+|+||||.+.|.+++...|+||+.|.+....
T Consensus 299 lleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev 378 (708)
T KOG0348|consen 299 LLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEV 378 (708)
T ss_pred HHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhc
Confidence 58999999999999876 3357999999999999999999999999998721100
Q ss_pred ----------ccccccceEEEEEEcCcccHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhcc----------
Q 011052 55 ----------DEKLAEGIKLYAISTTATSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI---------- 111 (494)
Q Consensus 55 ----------~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~---------- 111 (494)
.-.+++.+.+.|..++..-++-.|..+|... .+..++|||+.+.+.++.=++.+...
T Consensus 379 ~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~ 458 (708)
T KOG0348|consen 379 DDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG 458 (708)
T ss_pred CCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC
Confidence 0123455677788888776666666665443 24569999999999999888877521
Q ss_pred -------------CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhccc
Q 011052 112 -------------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRT 178 (494)
Q Consensus 112 -------------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~ 178 (494)
.++.-|||+|+|++|..+++.|+...-.||+||||++||||+|+|++||+||+|.++++|+||+|||
T Consensus 459 ~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 459 APDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred CcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 2467899999999999999999998888999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 179 GRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 179 gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
+|+|..|.+++|+.|.|..++..++.+..
T Consensus 539 ARaG~kG~alLfL~P~Eaey~~~l~~~~~ 567 (708)
T KOG0348|consen 539 ARAGEKGEALLFLLPSEAEYVNYLKKHHI 567 (708)
T ss_pred hhccCCCceEEEecccHHHHHHHHHhhcc
Confidence 99999999999999999999999887643
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=278.08 Aligned_cols=204 Identities=36% Similarity=0.597 Sum_probs=189.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC-cccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L~ 79 (494)
|+||||.+++..|++.+++.+|+++||||+|..+..++.+.++.|+.|.+- ....+...+++.+..++ ...|...|.
T Consensus 527 mfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--~~svV~k~V~q~v~V~~~e~eKf~kL~ 604 (997)
T KOG0334|consen 527 MFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--GRSVVCKEVTQVVRVCAIENEKFLKLL 604 (997)
T ss_pred hheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--cceeEeccceEEEEEecCchHHHHHHH
Confidence 789999999999999999999999999999999999999999988886553 34455677777777777 788999999
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.+|..+..+.++||||...+.|+.+...|.+ ++.|..|||+.+|.+|..+++.|+++.+.+||||++++||+|++++.+
T Consensus 605 eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~L 684 (997)
T KOG0334|consen 605 ELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELIL 684 (997)
T ss_pred HHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceE
Confidence 9999888889999999999999999999987 789999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (494)
|||||+|...+.|+||+|||||+|++|.|++|+++.+..+.-.|.+.+
T Consensus 685 vvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 685 VVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred EEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999998888888888877
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-31 Score=266.45 Aligned_cols=223 Identities=33% Similarity=0.519 Sum_probs=179.5
Q ss_pred CCCCChHHHHHHHHHhCC-----CCCcEEEEeecCChH---------------------HHHHHHH--HcCCCcEEEecc
Q 011052 1 MLAVGFEEDVELILENLP-----PKRQSMLFSATMPSW---------------------VKKLSRK--YLDNPLNIDLVG 52 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp-----~~~q~ll~SATlp~~---------------------i~~l~~~--~l~~p~~i~~~~ 52 (494)
|++-|+-+++..||..+. ..+|+++||||+.-. |+.++++ +..+|.+|++..
T Consensus 352 mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~ 431 (731)
T KOG0347|consen 352 MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTP 431 (731)
T ss_pred HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCc
Confidence 788999999999999886 468999999998421 2223332 233567777652
Q ss_pred ccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHc
Q 011052 53 NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLN 131 (494)
Q Consensus 53 ~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~ 131 (494)
...+...+..-.+.|+..+|.-.|..+|..| ++++|||||+.+.+..|+-.|.. .+....||+.|.|.+|.+.|+
T Consensus 432 --q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLE 507 (731)
T KOG0347|consen 432 --QSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLE 507 (731)
T ss_pred --chhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHH
Confidence 3334444444455566666655555555555 58999999999999999999987 789999999999999999999
Q ss_pred cccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCce
Q 011052 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 132 ~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~ 211 (494)
+|++....||||||||+||||||.|+|||||..|.+.+.|+||+|||+|++..|.+++|+.|.|...+++|.+.+..+.+
T Consensus 508 kF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 508 KFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred HHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888876655
Q ss_pred ecCCCCHHHHHHHHHH
Q 011052 212 FVSPPVVEDVLESSAE 227 (494)
Q Consensus 212 ~~~~p~~~~i~~~~~~ 227 (494)
.-..|-.+.++....+
T Consensus 588 lpifPv~~~~m~~lke 603 (731)
T KOG0347|consen 588 LPIFPVETDIMDALKE 603 (731)
T ss_pred CCceeccHHHHHHHHH
Confidence 4445555555554433
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=267.48 Aligned_cols=233 Identities=20% Similarity=0.285 Sum_probs=175.6
Q ss_pred hHHHHHHHHH-------hCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC--------
Q 011052 6 FEEDVELILE-------NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (494)
Q Consensus 6 F~~~i~~Il~-------~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-------- 70 (494)
|..++..+++ ..+.++|+++||||+++..+ +++.++..|..+ +.. ........++..+..+
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~--~~~~~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTE--DGSPRGARTVALWEPPLTELTGEN 248 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECC--CCCCcCceEEEEecCCcccccccc
Confidence 5555555444 44678999999999998865 677788777543 221 1111222222222221
Q ss_pred --------cccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc---------cCceeeecCCCCHHHHHHHHccc
Q 011052 71 --------ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 71 --------~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~R~~~l~~F 133 (494)
...+..++..++. .+.++||||+|++.|+.++..|.+ ...+..+||++++++|.+++++|
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred ccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 1134444555543 457999999999999999998764 24688999999999999999999
Q ss_pred cCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecC--hhhHHHHHHHHHHhCCCce
Q 011052 134 RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVGCKFE 211 (494)
Q Consensus 134 r~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~--~~e~~~l~~le~~~~~~~~ 211 (494)
++|++++|||||++++|||+|++++||||++|.+.++|+||+|||||.|+.|.+++++. +.|...+..+++.+..+++
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e 405 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVE 405 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999986 5677788888888888877
Q ss_pred e-cCCCCHHHHHHHHHHHHHHHHccCCccchhhhhH
Q 011052 212 F-VSPPVVEDVLESSAEQVVATLNGVHPESVEFFTP 246 (494)
Q Consensus 212 ~-~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~ 246 (494)
. ...|....++..++......+ .+..++.+.|.+
T Consensus 406 ~~~~~~~n~~il~~hl~~aa~e~-~l~~~~~~~~~~ 440 (742)
T TIGR03817 406 ATVFDPDNPYVLGPHLCCAAAEL-PLTEADLELFGP 440 (742)
T ss_pred cceeCCCcHHHHHHHHHHHHhcC-CCChHHHHhhch
Confidence 6 345777778887777666544 444444555543
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=247.54 Aligned_cols=214 Identities=33% Similarity=0.479 Sum_probs=198.6
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
+++|||.+++.+|+..+|..+|+++||||+|..+..+++.-+.+|..|.+. -+.++.+.+++.+..+...+|...|..
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRld--vetkise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD--VETKISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEee--hhhhcchhhhhheeeeccHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999988753 355677888999999999999999999
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++.....+.++||||.|+..|+.+...|.. ++.+..+++.|++..|...+.+|+.++..+||.||+++||+|+|-.+.|
T Consensus 254 il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnv 333 (529)
T KOG0337|consen 254 ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNV 333 (529)
T ss_pred HHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccc
Confidence 998876778999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (494)
||||+|.+...|+||+||+.|+|++|.+|.++.+.+..++-.|...++.++.....+
T Consensus 334 inyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~ 390 (529)
T KOG0337|consen 334 INYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISH 390 (529)
T ss_pred ccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccch
Confidence 999999999999999999999999999999999999999999999998887765443
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=246.42 Aligned_cols=196 Identities=28% Similarity=0.502 Sum_probs=171.8
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc--------cHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT--------SKR 75 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~--------~k~ 75 (494)
--|+++|..|+..+|..+|++.||||.|..+..+..+||++|..|..... ....-.|++|++..+.. .|+
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~--d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD--DVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC--CceeechhheeeeccCCcchHHHHHHHH
Confidence 35999999999999999999999999999999999999999999887533 33345677777665542 366
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip 154 (494)
+.|.++++.+ +-.++||||+....|+.++..|.. ++.|.++.|.|+|.+|..+++.+|.-.++|||+||+.+||||-|
T Consensus 261 q~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~ 339 (980)
T KOG4284|consen 261 QKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDAD 339 (980)
T ss_pred HHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcc
Confidence 7777777765 557999999999999999999985 89999999999999999999999999999999999999999999
Q ss_pred cccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhH-HHHHHH
Q 011052 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR-RTVRSL 202 (494)
Q Consensus 155 ~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~-~~l~~l 202 (494)
+|++|||.|.|.+.++|.||+||+||.|..|.+++|+...+. ..+..+
T Consensus 340 ~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 340 NVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred ccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999999999999999999999998876543 443333
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-27 Score=260.12 Aligned_cols=199 Identities=19% Similarity=0.258 Sum_probs=155.8
Q ss_pred CCCCC--hHHHHHHH--HHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCccc-HH
Q 011052 1 MLAVG--FEEDVELI--LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KR 75 (494)
Q Consensus 1 mL~~G--F~~~i~~I--l~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~ 75 (494)
|++.| |+++...| +....++.|+++||||++..+.+.+...+.-...+.+... .. ..++. |...+... ..
T Consensus 593 VSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S-f~--RpNL~--y~Vv~k~kk~l 667 (1195)
T PLN03137 593 VSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS-FN--RPNLW--YSVVPKTKKCL 667 (1195)
T ss_pred hhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc-cC--ccceE--EEEeccchhHH
Confidence 35666 88887763 4555567899999999999988866666653322222211 11 22332 22222222 23
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip 154 (494)
+.|..++.....+.++||||+|++.|+.+++.|.. ++.+..+||+|++.+|..++++|++|+++|||||+++++|||+|
T Consensus 668 e~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkP 747 (1195)
T PLN03137 668 EDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKP 747 (1195)
T ss_pred HHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCcc
Confidence 44555554433456899999999999999999986 89999999999999999999999999999999999999999999
Q ss_pred cccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 155 NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 155 ~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
+|++||||++|.+++.|+||+|||||.|..+.|++||...|...++.+..
T Consensus 748 DVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 748 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred CCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988877666643
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=244.06 Aligned_cols=196 Identities=23% Similarity=0.377 Sum_probs=153.2
Q ss_pred CCCC--hHHHHHHH---HHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCcccH
Q 011052 2 LAVG--FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 2 L~~G--F~~~i~~I---l~~lp~~~q~ll~SATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
++.| |+++...| ...+ ++.|++++|||+++.+...+...+. +|..+... .. ..++... +.......
T Consensus 140 ~~~g~~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~--r~nl~~~-v~~~~~~~ 212 (470)
T TIGR00614 140 SQWGHDFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FD--RPNLYYE-VRRKTPKI 212 (470)
T ss_pred CccccccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CC--CCCcEEE-EEeCCccH
Confidence 4455 77776654 3444 5789999999999988766555543 45443321 11 1223222 22222234
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
.+.+..++....++..+||||+|++.|+.+++.|.. ++.+..+|++|++.+|.+++++|++|+++|||||+++++|||+
T Consensus 213 ~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~ 292 (470)
T TIGR00614 213 LEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINK 292 (470)
T ss_pred HHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCc
Confidence 444455554333556779999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred CcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 154 p~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
|+|++||||++|.+++.|+||+|||||.|..+.|++|+++.|...++.+..
T Consensus 293 p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 293 PDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred ccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887777643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-26 Score=245.87 Aligned_cols=231 Identities=16% Similarity=0.239 Sum_probs=166.9
Q ss_pred HHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc----------ccHHH
Q 011052 8 EDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA----------TSKRT 76 (494)
Q Consensus 8 ~~i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~----------~~k~~ 76 (494)
+.+..+++.++ ..+|+++||||+|.+++.+ ++|+++|..|.+.+ .+...++++|+.... ..+..
T Consensus 308 DllL~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g----rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~ 382 (675)
T PHA02653 308 DIIIAVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG----GTLFPISEVYVKNKYNPKNKRAYIEEEKKN 382 (675)
T ss_pred hHHHHHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC----CcCCCeEEEEeecCcccccchhhhHHHHHH
Confidence 44556666554 4469999999999988887 57999998887642 233556777764331 12333
Q ss_pred HHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccc-cCCCeeEEEechhhhccC
Q 011052 77 ILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGF-RQGKFTVLVATDVAARGL 151 (494)
Q Consensus 77 ~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~F-r~g~~~iLVaT~~~~~Gi 151 (494)
++..+.... ..++++||||+++++|+.+++.|.+ .+.+.+|||+|++. ++++++| ++++.+||||||+|++||
T Consensus 383 ~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGI 460 (675)
T PHA02653 383 IVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSV 460 (675)
T ss_pred HHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccc
Confidence 333333222 1346899999999999999999985 47899999999985 4667777 789999999999999999
Q ss_pred CCCcccEEEecC---CCC---------ChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHH
Q 011052 152 DIPNVDLIIHYE---LPN---------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219 (494)
Q Consensus 152 Dip~v~~VI~~~---~P~---------~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~ 219 (494)
|||+|++|||++ .|. +.++|+||+|||||. ++|.|+.|+++.+... ..
T Consensus 461 DIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~p-------------------I~ 520 (675)
T PHA02653 461 TIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKP-------------------IK 520 (675)
T ss_pred cccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHH-------------------HH
Confidence 999999999998 665 888999999999999 7999999999887421 22
Q ss_pred HHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCC
Q 011052 220 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (494)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~ 271 (494)
++....+..++..++....+..+.+ +++.+..+.+.+|+..|..+.
T Consensus 521 ri~~~~L~~~vL~lk~~g~~~~~~~------~ldpP~~~~l~~A~~~L~~lg 566 (675)
T PHA02653 521 RIDSEFLHNYILYAKYFNLTLPEDL------FVIPSNLDRLRKTEEYIDSFN 566 (675)
T ss_pred HHhHHHHHHHHHHHHHcCCCCcccc------cCCCCCHHHHHHHHHHHHHcC
Confidence 2222234444444444433322221 577778888888887776554
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-26 Score=251.93 Aligned_cols=244 Identities=17% Similarity=0.235 Sum_probs=175.7
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHH----
Q 011052 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR---- 75 (494)
Q Consensus 1 mL~~GF~~~-i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~---- 75 (494)
||++.|.-. +.+|++.++++.|+|+||||++... ...|+.++..|.+.+. ...++++|+.....++.
T Consensus 126 ~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr-----~~pVe~~y~~~~~~~~~~~~v 197 (819)
T TIGR01970 126 SLDADLGLALALDVQSSLREDLKILAMSATLDGER---LSSLLPDAPVVESEGR-----SFPVEIRYLPLRGDQRLEDAV 197 (819)
T ss_pred hhccchHHHHHHHHHHhcCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc-----ceeeeeEEeecchhhhHHHHH
Confidence 355555332 3456667788999999999998763 3568877776665321 12366777665544332
Q ss_pred -HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhcc
Q 011052 76 -TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (494)
Q Consensus 76 -~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~G 150 (494)
..+..++.. ..+++||||+++++++.+++.|.+ .+.+..+||+|++++|.++++.|++|..+||||||++++|
T Consensus 198 ~~~l~~~l~~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErg 275 (819)
T TIGR01970 198 SRAVEHALAS--ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETS 275 (819)
T ss_pred HHHHHHHHHh--cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhc
Confidence 223333332 357999999999999999999985 5789999999999999999999999999999999999999
Q ss_pred CCCCcccEEEecCCCCC------------------hhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCcee
Q 011052 151 LDIPNVDLIIHYELPND------------------PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212 (494)
Q Consensus 151 iDip~v~~VI~~~~P~~------------------~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~ 212 (494)
||||+|++|||+++|.. .++|+||+|||||. ++|.||.|+++.+...+.. +.
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l~~---~~------ 345 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRLPA---QD------ 345 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhhhc---CC------
Confidence 99999999999998853 34689999999999 7999999999877543222 11
Q ss_pred cCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCCC
Q 011052 213 VSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPP 274 (494)
Q Consensus 213 ~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~~ 274 (494)
..||+...+..++..++.........| .+++.+..+.+.+|+..|..+....
T Consensus 346 -----~PEI~r~~L~~~~L~l~~~g~~~~~~~-----~~l~~P~~~~i~~a~~~L~~lgald 397 (819)
T TIGR01970 346 -----EPEILQADLSGLALELAQWGAKDPSDL-----RWLDAPPSVALAAARQLLQRLGALD 397 (819)
T ss_pred -----CcceeccCcHHHHHHHHHcCCCChhhC-----CCCCCcCHHHHHHHHHHHHHCCCCC
Confidence 233344444445555555433333333 4567777788888887776555443
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=235.91 Aligned_cols=199 Identities=30% Similarity=0.466 Sum_probs=172.3
Q ss_pred ChHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEE-cCcccHHHHHHHHH
Q 011052 5 GFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIS-TTATSKRTILSDLI 82 (494)
Q Consensus 5 GF~~~i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~-~~~~~k~~~L~~ll 82 (494)
+|.+++..|++.+. ++..+-+||||+|..++++++..+.++..|.+- .. +.....+.|..+. .....|.-.+.+++
T Consensus 305 ~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg-~~-~sa~~~V~QelvF~gse~~K~lA~rq~v 382 (593)
T KOG0344|consen 305 FFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVG-LR-NSANETVDQELVFCGSEKGKLLALRQLV 382 (593)
T ss_pred hHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEe-cc-hhHhhhhhhhheeeecchhHHHHHHHHH
Confidence 79999999999875 567888999999999999999998888877543 22 2224455554444 44557888888888
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHh--ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~--~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
..- -..++|||+.+.+.|.+|++.|. ..+.+.++||+.++.+|+.++++||.|+++|||||++++||+|+.+|++||
T Consensus 383 ~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 383 ASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred hcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 764 35799999999999999999995 478999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh
Q 011052 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (494)
|||+|.+.-+|+||+||+||+|+.|.+|+||++.+...++.++...
T Consensus 462 nyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~ 507 (593)
T KOG0344|consen 462 NYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVM 507 (593)
T ss_pred ecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHH
Confidence 9999999999999999999999999999999999998888886654
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=243.31 Aligned_cols=189 Identities=20% Similarity=0.379 Sum_probs=147.6
Q ss_pred hHHHHHHH---HHhCCCCCcEEEEeecCChHHHHHHHHHc--CCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~i~~I---l~~lp~~~q~ll~SATlp~~i~~l~~~~l--~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|++++..| ...+ ++.|++++|||+++.+...+...+ .+|... +.. .. ..++. +.......+.+.+..
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~~--r~nl~--~~v~~~~~~~~~l~~ 229 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FD--RPNIR--YTLVEKFKPLDQLMR 229 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--CC--CCcce--eeeeeccchHHHHHH
Confidence 66665443 4444 478999999999988766444443 344332 211 11 12232 222222334444444
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... .+.++||||+|++.|+.+++.|.. ++.+..+|++|++++|.++++.|++++++|||||+++++|||+|+|++|
T Consensus 230 ~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 230 YVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 55443 567999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHH
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le 203 (494)
|||++|.+.++|+||+|||||.|..+.|++|+++.|...++.+.
T Consensus 309 I~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987776654
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=248.79 Aligned_cols=240 Identities=18% Similarity=0.242 Sum_probs=178.0
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-----HHHHHHHHh
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-----ILSDLITVY 85 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-----~L~~ll~~~ 85 (494)
.++++.++++.|+|+||||++.. .+ ..|+.++..|.+.+. ...++++|+..+...+.+ .+..++..
T Consensus 140 ~~i~~~lr~~lqlilmSATl~~~--~l-~~~~~~~~~I~~~gr-----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~- 210 (812)
T PRK11664 140 LDVQQGLRDDLKLLIMSATLDND--RL-QQLLPDAPVIVSEGR-----SFPVERRYQPLPAHQRFDEAVARATAELLRQ- 210 (812)
T ss_pred HHHHHhCCccceEEEEecCCCHH--HH-HHhcCCCCEEEecCc-----cccceEEeccCchhhhHHHHHHHHHHHHHHh-
Confidence 45677788899999999999875 23 567877766655322 123677777665544443 23333322
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
..+.+|||||++++++.+++.|.+ .+.+..+||+|++.+|.++++.|++|+.+||||||++++|||||+|++|||
T Consensus 211 -~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 211 -ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEE
Confidence 358999999999999999999985 577899999999999999999999999999999999999999999999999
Q ss_pred cCCCCC------------------hhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHH
Q 011052 162 YELPND------------------PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLE 223 (494)
Q Consensus 162 ~~~P~~------------------~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~ 223 (494)
+++|.. .++|+||+|||||. .+|.||.++++.+...+ ..-...||+.
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~l--------------~~~~~PEI~r 354 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAERA--------------AAQSEPEILH 354 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhhC--------------ccCCCCceec
Confidence 887753 46899999999999 59999999998875321 1122346666
Q ss_pred HHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccc
Q 011052 224 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLI 280 (494)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~ 280 (494)
..+..++..++.........| .+++.+.++.+.+|+..|..+........++
T Consensus 355 ~dL~~~~L~l~~~g~~~~~~~-----~~ld~P~~~~~~~A~~~L~~lgald~~g~lT 406 (812)
T PRK11664 355 SDLSGLLLELLQWGCHDPAQL-----SWLDQPPAAALAAAKRLLQQLGALDGQGRLT 406 (812)
T ss_pred cchHHHHHHHHHcCCCCHHhC-----CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcC
Confidence 666666666666544333333 4667788888888888876555443333333
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-25 Score=241.11 Aligned_cols=183 Identities=21% Similarity=0.277 Sum_probs=140.9
Q ss_pred CCCChHHHHHHHHHhC--CCC---CcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH
Q 011052 2 LAVGFEEDVELILENL--PPK---RQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (494)
Q Consensus 2 L~~GF~~~i~~Il~~l--p~~---~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (494)
|+|||.++++.|++.+ ++. +|+++||||+|.++.++++.++.++..+.+.. .......+.++ +.++...|..
T Consensus 182 Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~--~~l~a~ki~q~-v~v~~e~Kl~ 258 (844)
T TIGR02621 182 LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK--KRLAAKKIVKL-VPPSDEKFLS 258 (844)
T ss_pred hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc--ccccccceEEE-EecChHHHHH
Confidence 6899999999999975 443 69999999999999999888988887766542 23334455554 3333334443
Q ss_pred HHHH-HHHHh-ccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHH-----HHHccccC----CC-------e
Q 011052 77 ILSD-LITVY-AKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRE-----RTLNGFRQ----GK-------F 138 (494)
Q Consensus 77 ~L~~-ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~-----~~l~~Fr~----g~-------~ 138 (494)
.+.. +...+ ...+++||||||++.|+.+++.|.+.- ...+||+|++.+|+ +++++|++ ++ .
T Consensus 259 ~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g-~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~ 337 (844)
T TIGR02621 259 TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK-FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT 337 (844)
T ss_pred HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC-CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc
Confidence 3222 22212 245789999999999999999998632 28999999999999 88999987 43 6
Q ss_pred eEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCc-eEEEec
Q 011052 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG-TAILMF 191 (494)
Q Consensus 139 ~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g-~~i~l~ 191 (494)
.|||||+++++||||+. ++||++..| .++|+||+||+||.|+.+ ..++++
T Consensus 338 ~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 338 VYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred eEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 89999999999999987 889987776 689999999999999753 335554
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=230.76 Aligned_cols=189 Identities=23% Similarity=0.431 Sum_probs=151.4
Q ss_pred hHHHHHHH---HHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 6 FEEDVELI---LENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~i~~I---l~~lp~~~q~ll~SATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+++...| ...+| +.+++++|||++..+...+...+. ++..+ ... .. ..++. +.......+.+.+.+
T Consensus 146 frp~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~--~~~-~~--r~nl~--~~v~~~~~~~~~l~~ 217 (591)
T TIGR01389 146 FRPEYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEF--ITS-FD--RPNLR--FSVVKKNNKQKFLLD 217 (591)
T ss_pred cHHHHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE--ecC-CC--CCCcE--EEEEeCCCHHHHHHH
Confidence 77766555 34454 456999999999988876666665 33322 111 11 12222 222333456666666
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... .+.++||||+|++.|+.+++.|.. ++.+..+|++|++++|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 218 ~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~V 296 (591)
T TIGR01389 218 YLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFV 296 (591)
T ss_pred HHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEE
Confidence 66654 357999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHH
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le 203 (494)
|||++|.+.+.|+|++||+||.|..+.|++++++.|...++.+.
T Consensus 297 I~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 297 IHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred EEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987766654
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=236.97 Aligned_cols=253 Identities=22% Similarity=0.339 Sum_probs=169.1
Q ss_pred hHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCccc----------
Q 011052 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATS---------- 73 (494)
Q Consensus 6 F~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~---------- 73 (494)
|...|+.|...++.+.|+|++|||+++ .+++++ |+. ++..| +.....+ ...+++. +......
T Consensus 145 Lel~LeRL~~l~~~~~QrIgLSATI~n-~eevA~-~L~g~~pv~I--v~~~~~r-~~~l~v~-vp~~d~~~~~~~~~~~~ 218 (1490)
T PRK09751 145 LALSLERLDALLHTSAQRIGLSATVRS-ASDVAA-FLGGDRPVTV--VNPPAMR-HPQIRIV-VPVANMDDVSSVASGTG 218 (1490)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEeeCCC-HHHHHH-HhcCCCCEEE--ECCCCCc-ccceEEE-EecCchhhccccccccc
Confidence 566788888888888999999999987 455654 554 24433 2211111 1223322 1111100
Q ss_pred -----------HHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccC------------------------------
Q 011052 74 -----------KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSII------------------------------ 112 (494)
Q Consensus 74 -----------k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~------------------------------ 112 (494)
...+...++..+....++||||||+..|+.++..|++..
T Consensus 219 ~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1490)
T PRK09751 219 EDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQS 298 (1490)
T ss_pred cccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccc
Confidence 011223445444456899999999999999999887421
Q ss_pred ----ceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCC-CCCceE
Q 011052 113 ----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTA 187 (494)
Q Consensus 113 ----~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~-G~~g~~ 187 (494)
.+.++||+|++++|..+++.|++|++++||||+.+++||||++|++||||+.|.++.+|+||+||+||. +..+.+
T Consensus 299 ~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~g 378 (1490)
T PRK09751 299 SDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKG 378 (1490)
T ss_pred ccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEE
Confidence 256899999999999999999999999999999999999999999999999999999999999999996 344555
Q ss_pred EEecChhhHHHH---HHHHHHhCCCceecCCCCH-HHHHHHHHHHHHHHHccCCccchhhhhHHHHH--HHhhcCHHHHH
Q 011052 188 ILMFTSSQRRTV---RSLERDVGCKFEFVSPPVV-EDVLESSAEQVVATLNGVHPESVEFFTPTAQR--LIEEKGTDALA 261 (494)
Q Consensus 188 i~l~~~~e~~~l---~~le~~~~~~~~~~~~p~~-~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~--l~~~~~~~~l~ 261 (494)
+++..... ..+ -.++.+....++.+.+|.. -+++..++-.+... ..++.+.+ | +.... -+..+..+.+.
T Consensus 379 li~p~~r~-dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~-~~~~~d~l--~-~~vrra~pf~~L~~~~f~ 453 (1490)
T PRK09751 379 LFFPRTRR-DLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAM-DALQVDEW--Y-SRVRRAAPWKDLPRRVFD 453 (1490)
T ss_pred EEEeCcHH-HHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhc-CCCCHHHH--H-HHhhccCCcccCCHHHHH
Confidence 54444322 222 2467777888887666644 46776665555442 22222211 1 11111 12345667777
Q ss_pred HHHHHHcC
Q 011052 262 AALAQLSG 269 (494)
Q Consensus 262 aal~~~~g 269 (494)
+.|..+.+
T Consensus 454 ~vl~~L~~ 461 (1490)
T PRK09751 454 ATLDMLSG 461 (1490)
T ss_pred HHHHHHhc
Confidence 77777765
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=235.77 Aligned_cols=240 Identities=18% Similarity=0.336 Sum_probs=171.8
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCccc---HHH
Q 011052 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS---KRT 76 (494)
Q Consensus 1 mL~~GF~~~-i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~ 76 (494)
||+++|... +..++... ++.|+|+||||++. ..+++.|.+.| .|.+.+.. ..++++|....... +.+
T Consensus 199 sLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~--e~fs~~F~~ap-vI~V~Gr~-----~pVei~y~p~~~~~~~~~~d 269 (1294)
T PRK11131 199 SLNIDFILGYLKELLPRR-PDLKVIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPIVEEADDTERD 269 (1294)
T ss_pred ccccchHHHHHHHhhhcC-CCceEEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc-----ccceEEEeecccccchhhHH
Confidence 688999764 55555443 47899999999975 46666555444 46554321 23556665543221 233
Q ss_pred HHHHHHH---Hh--ccCCcEEEEcCChhhHHHHHHHHhc-cC---ceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 77 ILSDLIT---VY--AKGGKTIVFTQTKRDADEVSLALTS-II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 77 ~L~~ll~---~~--~~~~~~IVF~~t~~~~~~l~~~L~~-~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
.+..++. .+ ...+++||||+++++++.+++.|.+ .+ .+.++||+|++++|.++++. .+..+||||||++
T Consensus 270 ~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIA 347 (1294)
T PRK11131 270 QLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVA 347 (1294)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHH
Confidence 3333332 22 2457899999999999999999985 33 47789999999999999987 4678999999999
Q ss_pred hccCCCCcccEEEecC---------------CC---CChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCC
Q 011052 148 ARGLDIPNVDLIIHYE---------------LP---NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 148 ~~GiDip~v~~VI~~~---------------~P---~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (494)
++|||||+|++|||++ +| .+.++|+||+|||||. .+|.||.+|++.+...+.
T Consensus 348 EtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~~--------- 417 (1294)
T PRK11131 348 ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSRP--------- 417 (1294)
T ss_pred hhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhhh---------
Confidence 9999999999999986 34 4568999999999999 699999999987743221
Q ss_pred ceecCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCC
Q 011052 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS 271 (494)
Q Consensus 210 ~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~ 271 (494)
.-+..||+...+..++..++......+..| .+++.+..+.+..++..|..+.
T Consensus 418 -----~~~~PEIlR~~L~~viL~lk~lgl~di~~F-----~fldpP~~~~i~~al~~L~~Lg 469 (1294)
T PRK11131 418 -----EFTDPEILRTNLASVILQMTALGLGDIAAF-----PFVEAPDKRNIQDGVRLLEELG 469 (1294)
T ss_pred -----cccCCccccCCHHHHHHHHHHcCCCCccee-----eCCCCCCHHHHHHHHHHHHHCC
Confidence 112345666667777777776655555555 4677778888888777775443
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=211.57 Aligned_cols=191 Identities=28% Similarity=0.434 Sum_probs=161.4
Q ss_pred hCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEecc--ccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEE
Q 011052 16 NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIV 93 (494)
Q Consensus 16 ~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~--~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IV 93 (494)
.+++..+.++||||+...-.++...-+..|....+.. ...-.++..+.|+++.+...-|.-.+..++... +-.++|+
T Consensus 356 ~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lc 434 (620)
T KOG0350|consen 356 KLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLC 434 (620)
T ss_pred CcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEE
Confidence 3455677899999997776677766777886554432 112345677888888888877888888888776 5689999
Q ss_pred EcCChhhHHHHHHHHh-c----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCCh
Q 011052 94 FTQTKRDADEVSLALT-S----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDP 168 (494)
Q Consensus 94 F~~t~~~~~~l~~~L~-~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~ 168 (494)
|+++.+.+..++..|+ . .+.+..+.|.++...|.+.+++|+.|+++||||||+++||||+.+|+.|||||+|.+.
T Consensus 435 f~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ 514 (620)
T KOG0350|consen 435 FVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASD 514 (620)
T ss_pred EecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchh
Confidence 9999999999999987 1 4567779999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 169 ETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 169 ~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
.+|+||+|||+|+|+.|.|++++..++.+.+.++.+..+
T Consensus 515 ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 515 KTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred hHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhc
Confidence 999999999999999999999999999887776666554
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=228.82 Aligned_cols=191 Identities=18% Similarity=0.280 Sum_probs=149.2
Q ss_pred HHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhcc
Q 011052 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAK 87 (494)
Q Consensus 8 ~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~ 87 (494)
.+..++++.++.++|+++||||+++....++...+.++..|...+. . ...+++++.... ...+...++.....
T Consensus 587 v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~--R~~V~t~v~~~~---~~~i~~~i~~el~~ 659 (926)
T TIGR00580 587 VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--D--RLPVRTFVMEYD---PELVREAIRRELLR 659 (926)
T ss_pred hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--C--ccceEEEEEecC---HHHHHHHHHHHHHc
Confidence 3456777888889999999999877766666666667776654321 1 123444443222 12222334444456
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~ 164 (494)
+++++||||+++.++.+++.|++ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++||+++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 78999999999999999999986 578999999999999999999999999999999999999999999999999998
Q ss_pred CC-ChhhHHHHhcccCCCCCCceEEEecCh------hhHHHHHHHHHH
Q 011052 165 PN-DPETFVHRSGRTGRAGKEGTAILMFTS------SQRRTVRSLERD 205 (494)
Q Consensus 165 P~-~~~~y~qr~GR~gR~G~~g~~i~l~~~------~e~~~l~~le~~ 205 (494)
|. ...+|+||+||+||.|+.|.|++++.+ ...+.++.|++.
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 75 678999999999999999999999854 334555655543
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-22 Score=223.93 Aligned_cols=254 Identities=20% Similarity=0.268 Sum_probs=156.4
Q ss_pred HHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCC------CcEEEeccccccccccceEEEEEE-------cCcccHH
Q 011052 9 DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDN------PLNIDLVGNQDEKLAEGIKLYAIS-------TTATSKR 75 (494)
Q Consensus 9 ~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~------p~~i~~~~~~~~~~~~~i~~~~~~-------~~~~~k~ 75 (494)
.++.+....+...|++++|||+++ ...+++ ++.. +..+.++..... ..+...... .......
T Consensus 196 ~L~rL~~l~~~~~q~IglSATl~~-~~~va~-~L~~~~~~~~~r~~~iv~~~~~---k~~~i~v~~p~~~l~~~~~~~~~ 270 (876)
T PRK13767 196 SLERLEELAGGEFVRIGLSATIEP-LEEVAK-FLVGYEDDGEPRDCEIVDARFV---KPFDIKVISPVDDLIHTPAEEIS 270 (876)
T ss_pred HHHHHHHhcCCCCeEEEEecccCC-HHHHHH-HhcCccccCCCCceEEEccCCC---ccceEEEeccCccccccccchhH
Confidence 345555555568899999999976 233433 3321 222222211111 111111110 1111111
Q ss_pred H-HHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc-------CceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 76 T-ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 76 ~-~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
. ++..+.+......++||||||++.|+.++..|.+. ..+.++||+|++++|..++++|++|.++|||||+++
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~L 350 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSL 350 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChH
Confidence 2 22223333345689999999999999999999752 568999999999999999999999999999999999
Q ss_pred hccCCCCcccEEEecCCCCChhhHHHHhcccCCC-CCCceEEEecCh-hh-HHHHHHHHHHhCCCceecCCCC-HHHHHH
Q 011052 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA-GKEGTAILMFTS-SQ-RRTVRSLERDVGCKFEFVSPPV-VEDVLE 223 (494)
Q Consensus 148 ~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~-G~~g~~i~l~~~-~e-~~~l~~le~~~~~~~~~~~~p~-~~~i~~ 223 (494)
++|||+|+|++||+|+.|.++.+|+||+||+||. |..+.+++++.. .| .+....++......++.+.+|. ..+++.
T Consensus 351 e~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~ 430 (876)
T PRK13767 351 ELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLA 430 (876)
T ss_pred HhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHH
Confidence 9999999999999999999999999999999986 444444444332 22 2223334455555566655553 456666
Q ss_pred HHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcC
Q 011052 224 SSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG 269 (494)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g 269 (494)
.++..+... ...+.+.+-.+...+ -.+.....+.+...+..+.+
T Consensus 431 q~i~~~~~~-~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~l~~l~~ 474 (876)
T PRK13767 431 QHIVGMAIE-RPWDIEEAYNIVRRA-YPYRDLSDEDFESVLRYLAG 474 (876)
T ss_pred HHHHHHHHc-CCCCHHHHHHHHhcc-CCcccCCHHHHHHHHHHHhc
Confidence 555443333 222222221111111 01233456666666666653
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=229.14 Aligned_cols=188 Identities=16% Similarity=0.241 Sum_probs=147.0
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCc
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 90 (494)
.++++.++.++|+++||||+++.+..++...+.++..|..... . ...++++...... ......++..+..+++
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~--~--r~~v~~~~~~~~~---~~~k~~il~el~r~gq 811 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--R--RLAVKTFVREYDS---LVVREAILREILRGGQ 811 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC--C--CCCceEEEEecCc---HHHHHHHHHHHhcCCe
Confidence 4667888899999999999888888888888888887765321 1 1234444333221 1223344444445689
Q ss_pred EEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCC-C
Q 011052 91 TIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P-~ 166 (494)
++||||+++.++.+++.|.+ .+.+.++||+|++.+|++++++|++|+++|||||+++++|||+|++++||.++.. .
T Consensus 812 v~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~f 891 (1147)
T PRK10689 812 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 (1147)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCC
Confidence 99999999999999999986 3679999999999999999999999999999999999999999999999954432 3
Q ss_pred ChhhHHHHhcccCCCCCCceEEEecCh------hhHHHHHHHHHH
Q 011052 167 DPETFVHRSGRTGRAGKEGTAILMFTS------SQRRTVRSLERD 205 (494)
Q Consensus 167 ~~~~y~qr~GR~gR~G~~g~~i~l~~~------~e~~~l~~le~~ 205 (494)
+..+|+||+||+||.|+.|.|++++.+ ...+.++.|++.
T Consensus 892 glaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~ 936 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 (1147)
T ss_pred CHHHHHHHhhccCCCCCceEEEEEeCCCcccCHHHHHHHHHHHHh
Confidence 566799999999999999999998753 334566666654
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=208.18 Aligned_cols=179 Identities=24% Similarity=0.309 Sum_probs=130.8
Q ss_pred HHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEE--EcCcccHHHHHHHHHHHhc
Q 011052 10 VELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI--STTATSKRTILSDLITVYA 86 (494)
Q Consensus 10 i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~--~~~~~~k~~~L~~ll~~~~ 86 (494)
+..+++.++ .+.|+++||||+|+.+.++++.+...+...... ... ......+.+. ......+.+.+..+++...
T Consensus 144 l~~~l~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 220 (358)
T TIGR01587 144 ILAVLEVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLD-LKE--ERRFERHRFIKIESDKVGEISSLERLLEFIK 220 (358)
T ss_pred HHHHHHHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCC-Ccc--ccccccccceeeccccccCHHHHHHHHHHhh
Confidence 555555554 478999999999988877776554332211111 000 0001122221 2222356677777777766
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc-C--ceeeecCCCCHHHHHHH----HccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI-I--ASEALHGDISQHQRERT----LNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~-~--~~~~lhg~~~~~~R~~~----l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++.++||||+|++.|+.+++.|.+. . .+..+||++++.+|.++ ++.|++++.+|||||+++++|+|++ +++|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 6789999999999999999999863 3 48999999999999764 8999999999999999999999996 8899
Q ss_pred EecCCCCChhhHHHHhcccCCCCCC----ceEEEecChh
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKE----GTAILMFTSS 194 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~----g~~i~l~~~~ 194 (494)
|++..| +++|+||+||+||.|+. +..+++....
T Consensus 300 i~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 300 ITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 998776 78999999999998854 3566665543
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.3e-22 Score=225.13 Aligned_cols=242 Identities=17% Similarity=0.292 Sum_probs=173.1
Q ss_pred CCCCChHHH-HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc------cc
Q 011052 1 MLAVGFEED-VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA------TS 73 (494)
Q Consensus 1 mL~~GF~~~-i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~------~~ 73 (494)
||+++|... +..|+... ++.|+|+||||++. ..+++.|.+.| .|.+.+.. ..++.+|..... .+
T Consensus 192 sL~~D~LL~lLk~il~~r-pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~-----~PVev~Y~~~~~~~~~~~~~ 262 (1283)
T TIGR01967 192 SLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRT-----YPVEVRYRPLVEEQEDDDLD 262 (1283)
T ss_pred hccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCc-----ccceeEEecccccccchhhh
Confidence 578888875 67777665 47899999999974 46666554444 46554321 123444443321 12
Q ss_pred HHHHHHHHHHHh--ccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 74 KRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 74 k~~~L~~ll~~~--~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
+.+.+..++... ...+.+|||++++++++.+++.|.+ .+.+..+||+|++++|.++++.+. ..+||||||++
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~--~rkIVLATNIA 340 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS--GRRIVLATNVA 340 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC--CceEEEeccHH
Confidence 334343434332 2457999999999999999999985 245889999999999999987753 46899999999
Q ss_pred hccCCCCcccEEEecCCC------------------CChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCC
Q 011052 148 ARGLDIPNVDLIIHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 148 ~~GiDip~v~~VI~~~~P------------------~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (494)
++|||||+|++|||++++ .+.++|+||+|||||.+ +|.||.+|+..+...+..
T Consensus 341 EtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~~-------- 411 (1283)
T TIGR01967 341 ETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRPE-------- 411 (1283)
T ss_pred HhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhhh--------
Confidence 999999999999999854 35689999999999998 999999999877533211
Q ss_pred ceecCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCC
Q 011052 210 FEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 210 ~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~ 273 (494)
-+..||+...+..++..++......+..| .+++.+..+.+..++..|..+...
T Consensus 412 ------~~~PEIlR~~L~~viL~l~~lg~~di~~f-----~fldpP~~~~i~~A~~~L~~LGAl 464 (1283)
T TIGR01967 412 ------FTDPEILRTNLASVILQMLALRLGDIAAF-----PFIEAPDPRAIRDGFRLLEELGAL 464 (1283)
T ss_pred ------ccCcccccccHHHHHHHHHhcCCCCcccc-----cCCCCCCHHHHHHHHHHHHHCCCC
Confidence 12345666667777777776554444444 467778888888888877654443
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-22 Score=208.40 Aligned_cols=192 Identities=26% Similarity=0.400 Sum_probs=149.1
Q ss_pred hHHHHHHHH---HhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 6 FEEDVELIL---ENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~i~~Il---~~lp~~~q~ll~SATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+++...+- ..+| +.+++.+|||.++.+..-+...|. ++..+... .. .+++........ +.+.+.+ -
T Consensus 150 FRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---fd--RpNi~~~v~~~~-~~~~q~~-f 221 (590)
T COG0514 150 FRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGS---FD--RPNLALKVVEKG-EPSDQLA-F 221 (590)
T ss_pred cCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec---CC--Cchhhhhhhhcc-cHHHHHH-H
Confidence 777655544 4455 889999999999988887766665 33333221 11 222222221111 1222222 2
Q ss_pred HHH-HhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 81 LIT-VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 81 ll~-~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
+.+ .....+..||||.|++.|+.+++.|.. ++.+..+|++|+.++|+.+.++|..++.+|+|||.++.+|||-|+|++
T Consensus 222 i~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRf 301 (590)
T COG0514 222 LATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRF 301 (590)
T ss_pred HHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceE
Confidence 221 123456789999999999999999996 799999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (494)
|||||+|.+++.|.|-+|||||.|....|++|+.+.|....+.+...
T Consensus 302 ViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 302 VIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999998777666443
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=210.83 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=136.5
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHh-ccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-AKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~ 100 (494)
.+.-||||.+....++.+.|..++..|.... .. .....+.++.+...+|...|.+++... ..+.++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k---p~-~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNR---PS-QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCC---Cc-cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 5678999999998899999988876665421 11 222334455566678888888887664 235789999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---ccc-----EEEecCCCCChhhH
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---~v~-----~VI~~~~P~~~~~y 171 (494)
++.+++.|.+ ++++.+|||++.+.+ ..+..|+.+...|+||||+++||+||+ +|. |||+|++|.+...|
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y 563 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARID 563 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHH
Confidence 9999999986 899999999865544 445555555567999999999999999 776 99999999999999
Q ss_pred HHHhcccCCCCCCceEEEecChhhH
Q 011052 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 172 ~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
+||+|||||.|.+|.+++|++..|.
T Consensus 564 ~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 564 RQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHhcccccCCCCCeEEEEEechhHH
Confidence 9999999999999999999998663
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-21 Score=212.51 Aligned_cols=190 Identities=25% Similarity=0.381 Sum_probs=133.8
Q ss_pred CCCChHHHHHHHHHhC---CCCCcEEEEeecCChHHHHHHHHHcCC--------CcEEEeccccccccccceEEEEEEcC
Q 011052 2 LAVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDN--------PLNIDLVGNQDEKLAEGIKLYAISTT 70 (494)
Q Consensus 2 L~~GF~~~i~~Il~~l---p~~~q~ll~SATlp~~i~~l~~~~l~~--------p~~i~~~~~~~~~~~~~i~~~~~~~~ 70 (494)
++.++-..++.++..+ +++.|++++|||+|+. .+++. ++.. |+.+...-...........+..+ .
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~--~ 225 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREV--E 225 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHH-HhCCCcccCCCCCCCCeeeEecCCeeccccccccC--C
Confidence 4567777777776554 5789999999999863 34443 3331 11111000000000000001111 1
Q ss_pred cccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc-------------------------------------Cc
Q 011052 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------IA 113 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------------------------------------~~ 113 (494)
...+...+..+++.+..++++||||+|++.|+.++..|... ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 226 VPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred CccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 11223344445554556789999999999999988877531 25
Q ss_pred eeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe----cC-----CCCChhhHHHHhcccCCCCCC
Q 011052 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-----LPNDPETFVHRSGRTGRAGKE 184 (494)
Q Consensus 114 ~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~-----~P~~~~~y~qr~GR~gR~G~~ 184 (494)
+.++|++|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+|||||.|..
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 788999999999999999999999999999999999999999999997 76 689999999999999999854
Q ss_pred --ceEEEecChhh
Q 011052 185 --GTAILMFTSSQ 195 (494)
Q Consensus 185 --g~~i~l~~~~e 195 (494)
|.+++++...+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 99999987653
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-22 Score=188.03 Aligned_cols=168 Identities=28% Similarity=0.568 Sum_probs=141.5
Q ss_pred ChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHH
Q 011052 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 84 (494)
Q Consensus 5 GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 84 (494)
..+.|+++|++..|.+.|+++||||++++|+.++++||.+|..|-+. +....+...++++|+.....+|...|.++|+.
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vD-dE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~ 280 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVD-DEAKLTLHGLQQYYVKLKENEKNRKLNDLLDV 280 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhcc-chhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 46789999999999999999999999999999999999999988543 44555678899999999999999899999988
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~ 164 (494)
+ .-.+++||+.+... | + | ..+ ||||++..||+||..|+.|+|||+
T Consensus 281 L-eFNQVvIFvKsv~R-------l-------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 281 L-EFNQVVIFVKSVQR-------L-------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred h-hhcceeEeeehhhh-------h-------------h----------h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 7 34799999987654 1 0 2 112 899999999999999999999999
Q ss_pred CCChhhHHHHhcccCCCCCCceEEEecChhh-HHHHHHHHHHhCC
Q 011052 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGC 208 (494)
Q Consensus 165 P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e-~~~l~~le~~~~~ 208 (494)
|.+.++|+||++||||.|.+|.+|+|++..+ ...+..++.....
T Consensus 326 p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v 370 (387)
T KOG0329|consen 326 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEV 370 (387)
T ss_pred CCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhc
Confidence 9999999999999999999999999988654 4455555544433
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-20 Score=207.14 Aligned_cols=188 Identities=19% Similarity=0.292 Sum_probs=134.5
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCc
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 90 (494)
...+...+..+|+++||||+.+....+......+...++... . ....+...++ ....+..++..+......+.+
T Consensus 400 r~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p--~--~r~~i~~~~~--~~~~~~~~~~~i~~~~~~g~q 473 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELP--P--GRKPITTVVI--PDSRRDEVYERIREEIAKGRQ 473 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCC--C--CCCCcEEEEe--CcccHHHHHHHHHHHHHcCCc
Confidence 344555566789999999976655444321111222232111 1 1122444333 233344444555555566789
Q ss_pred EEEEcCChh--------hHHHHHHHHhcc---CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 91 TIVFTQTKR--------DADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 91 ~IVF~~t~~--------~~~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++|||++.+ .++.+++.|.+. +.+..+||+|++.+|++++++|++|+++|||||+++++|+|+|++++|
T Consensus 474 ~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 474 AYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred EEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE
Confidence 999999654 456677777753 579999999999999999999999999999999999999999999999
Q ss_pred EecCCCC-ChhhHHHHhcccCCCCCCceEEEecC-h---hhHHHHHHHHH
Q 011052 160 IHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT-S---SQRRTVRSLER 204 (494)
Q Consensus 160 I~~~~P~-~~~~y~qr~GR~gR~G~~g~~i~l~~-~---~e~~~l~~le~ 204 (494)
|+++.|. ...+|+||+||+||.|..|.|++++. + .....++.+++
T Consensus 554 Ii~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~ 603 (681)
T PRK10917 554 VIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRE 603 (681)
T ss_pred EEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHH
Confidence 9999997 57889999999999999999999985 3 23344554443
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=207.13 Aligned_cols=224 Identities=22% Similarity=0.294 Sum_probs=146.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccce-EEEEEEcCcc--cH--H
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI-KLYAISTTAT--SK--R 75 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i-~~~~~~~~~~--~k--~ 75 (494)
|.+.++...++.|+..++...|++++|||+++ ..+++. ++..+.... . .........+ .+.++..... .+ .
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~-~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVS-D-WRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccC-C-CCCCcceeeEecCCeeeccCcchhcchH
Confidence 34567888999999999999999999999986 355654 554332111 0 0110110011 1111111111 11 1
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc----------------------------------cCceeeecCCC
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS----------------------------------IIASEALHGDI 121 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----------------------------------~~~~~~lhg~~ 121 (494)
.....+.+....+.++||||+|++.|+.++..|.. ...+.++|++|
T Consensus 226 ~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 226 SWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 11122223333568999999999999887766531 12488999999
Q ss_pred CHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe-------cCCCC-ChhhHHHHhcccCCCC--CCceEEEec
Q 011052 122 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-------YELPN-DPETFVHRSGRTGRAG--KEGTAILMF 191 (494)
Q Consensus 122 ~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~-------~~~P~-~~~~y~qr~GR~gR~G--~~g~~i~l~ 191 (494)
++.+|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|+||+|||||.| ..|.+++++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999994 55554 5678999999999976 679999998
Q ss_pred ChhhHHHHHHHHHHhCCCceec-CCCCHHHHHHHHHHHHH
Q 011052 192 TSSQRRTVRSLERDVGCKFEFV-SPPVVEDVLESSAEQVV 230 (494)
Q Consensus 192 ~~~e~~~l~~le~~~~~~~~~~-~~p~~~~i~~~~~~~~~ 230 (494)
...+.. +.+++++..+++.+ .....++.+..++...+
T Consensus 386 ~~~~~~--~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i 423 (720)
T PRK00254 386 TTEEPS--KLMERYIFGKPEKLFSMLSNESAFRSQVLALI 423 (720)
T ss_pred cCcchH--HHHHHHHhCCchhhhccCCchHHHHHHHHHHH
Confidence 765422 22445544444332 22233445554444333
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=211.12 Aligned_cols=163 Identities=17% Similarity=0.243 Sum_probs=140.2
Q ss_pred cHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHh-c-cCceeeecCCCCHHHHHHHHccccCC--CeeEEEechhhh
Q 011052 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALT-S-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATDVAA 148 (494)
Q Consensus 73 ~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~-~-~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~iLVaT~~~~ 148 (494)
.|.+.|.++++.. ...|+||||++++.++.+++.|. . ++.+..+||+|++.+|+++++.|+++ .++|||||++++
T Consensus 479 ~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 479 PRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 4666677777665 46899999999999999999995 3 78999999999999999999999974 699999999999
Q ss_pred ccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCC--CceecCCCCHHHHHHHHH
Q 011052 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGC--KFEFVSPPVVEDVLESSA 226 (494)
Q Consensus 149 ~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~--~~~~~~~p~~~~i~~~~~ 226 (494)
+|+|++.+++|||||+|++++.|+||+||++|.|+++.+.+++...+......|.+.+.. .+-...+|+.+++.+...
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~ 637 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFG 637 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999988777766665566666666544 666788899999999888
Q ss_pred HHHHHHHccC
Q 011052 227 EQVVATLNGV 236 (494)
Q Consensus 227 ~~~~~~l~~~ 236 (494)
..+...+...
T Consensus 638 ~~l~~~l~~~ 647 (956)
T PRK04914 638 DELIPYLASP 647 (956)
T ss_pred HHHHHHHhCC
Confidence 8887777554
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.8e-20 Score=201.65 Aligned_cols=166 Identities=22% Similarity=0.282 Sum_probs=122.9
Q ss_pred CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCCh-
Q 011052 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK- 98 (494)
Q Consensus 20 ~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~- 98 (494)
.+|+++||||+.+....+.....-+...++... . ....+..+.+ ....+..++..+.+....+.+++|||++.
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p--~--~r~~i~~~~~--~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~ 459 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDELP--P--GRKPITTVLI--KHDEKDIVYEFIEEEIAKGRQAYVVYPLIE 459 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccCC--C--CCCceEEEEe--CcchHHHHHHHHHHHHHhCCcEEEEEcccc
Confidence 689999999976554433221111112222111 1 1122333332 22334445555555555678999999976
Q ss_pred -------hhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCC-C
Q 011052 99 -------RDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPN-D 167 (494)
Q Consensus 99 -------~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~-~ 167 (494)
..++.+++.|.+ .+.+..+||+|++.+|.+++++|++|+.+|||||+++++|||+|++++||+++.|. .
T Consensus 460 ~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~g 539 (630)
T TIGR00643 460 ESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFG 539 (630)
T ss_pred ccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCC
Confidence 346677777764 46799999999999999999999999999999999999999999999999999987 6
Q ss_pred hhhHHHHhcccCCCCCCceEEEec
Q 011052 168 PETFVHRSGRTGRAGKEGTAILMF 191 (494)
Q Consensus 168 ~~~y~qr~GR~gR~G~~g~~i~l~ 191 (494)
..+|+||+||+||.|++|.|++++
T Consensus 540 ls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 540 LSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred HHHHHHHhhhcccCCCCcEEEEEE
Confidence 788999999999999999999998
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-20 Score=185.53 Aligned_cols=190 Identities=31% Similarity=0.483 Sum_probs=150.4
Q ss_pred CCCCChHHHHHHHHHhCCC------CCcEEEEeecCC-hHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc-
Q 011052 1 MLAVGFEEDVELILENLPP------KRQSMLFSATMP-SWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT- 72 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~------~~q~ll~SATlp-~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~- 72 (494)
+|..||-+-|..+..++|. ..|.+++|||+. -+++++.++.|.-|..|++.+ +..+++.+.|+...+.+.
T Consensus 375 lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkg--eD~vpetvHhvv~lv~p~~ 452 (725)
T KOG0349|consen 375 LLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKG--EDLVPETVHHVVKLVCPSV 452 (725)
T ss_pred hhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccc--ccccchhhccceeecCCcc
Confidence 4667888999988888873 479999999986 367788888999999988763 333444444443322211
Q ss_pred c-HHHHH-------------------------H------------HHHHHhccCCcEEEEcCChhhHHHHHHHHhc----
Q 011052 73 S-KRTIL-------------------------S------------DLITVYAKGGKTIVFTQTKRDADEVSLALTS---- 110 (494)
Q Consensus 73 ~-k~~~L-------------------------~------------~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---- 110 (494)
+ ...-| . ..++.+ .-.++||||.|+.+|+.+..++.+
T Consensus 453 d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~dcDnLer~~~qkgg~ 531 (725)
T KOG0349|consen 453 DGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQDCDNLERMMNQKGGK 531 (725)
T ss_pred CccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEeccccchHHHHHHHHcCCc
Confidence 0 00001 0 111111 236899999999999999999974
Q ss_pred cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEe
Q 011052 111 IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 111 ~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l 190 (494)
.+.|+++||+..+.+|.+.++.|++..++.|||||+++|||||..+.++||.-+|.+...|+||+||+||+.+-|.+|.+
T Consensus 532 ~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaisl 611 (725)
T KOG0349|consen 532 HYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISL 611 (725)
T ss_pred cceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEE
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999988988887
Q ss_pred cCh
Q 011052 191 FTS 193 (494)
Q Consensus 191 ~~~ 193 (494)
+..
T Consensus 612 vat 614 (725)
T KOG0349|consen 612 VAT 614 (725)
T ss_pred eec
Confidence 643
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-19 Score=194.75 Aligned_cols=188 Identities=23% Similarity=0.316 Sum_probs=125.8
Q ss_pred CCCChHHHHHHHHH---hCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceE---EEEEEcCcccHH
Q 011052 2 LAVGFEEDVELILE---NLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIK---LYAISTTATSKR 75 (494)
Q Consensus 2 L~~GF~~~i~~Il~---~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~---~~~~~~~~~~k~ 75 (494)
.|.++...++.++. .++++.|+|++|||+++ ..++++ ++..+. +... .....+...+. ..+.........
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~-~~~~-~r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASL-IKSN-FRPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCc-cCCC-CCCCCeEEEEEecCeeeecccccccc
Confidence 34556556666654 45678999999999986 355554 443222 1100 00000000011 011111111111
Q ss_pred HHHHHHHHH-hccCCcEEEEcCChhhHHHHHHHHhcc--------------------------CceeeecCCCCHHHHHH
Q 011052 76 TILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTSI--------------------------IASEALHGDISQHQRER 128 (494)
Q Consensus 76 ~~L~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~~--------------------------~~~~~lhg~~~~~~R~~ 128 (494)
. +..++.. ..+++++||||+|++.|+.++..|... ..+..+|++|++.+|..
T Consensus 224 ~-~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 224 D-INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred c-HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 1 2233333 345689999999999999999888532 13678999999999999
Q ss_pred HHccccCCCeeEEEechhhhccCCCCcccEEEecC---------CCCChhhHHHHhcccCCCC--CCceEEEecChhh
Q 011052 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE---------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (494)
Q Consensus 129 ~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~---------~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e 195 (494)
+++.|++|.++|||||+++++|+|+|...+|| ++ .|.++.+|.||+|||||.| ..|.+++++...+
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 99999999999999999999999999976555 33 3568889999999999998 4677888765443
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-19 Score=207.47 Aligned_cols=163 Identities=24% Similarity=0.307 Sum_probs=133.0
Q ss_pred CChH-HHHHHHHHhCCC------------------------CCcEEEEeecCChH-HHHHHHHHcCCCcEEEeccccccc
Q 011052 4 VGFE-EDVELILENLPP------------------------KRQSMLFSATMPSW-VKKLSRKYLDNPLNIDLVGNQDEK 57 (494)
Q Consensus 4 ~GF~-~~i~~Il~~lp~------------------------~~q~ll~SATlp~~-i~~l~~~~l~~p~~i~~~~~~~~~ 57 (494)
|||. ++|+.|+..+|. +.|+++||||+++. +.. .+++++..+++.. ...
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~--~~~ 301 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGS--PVF 301 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecC--ccc
Confidence 8995 789999988875 78999999999874 432 2344555555432 233
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhh---HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccc
Q 011052 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~---~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~F 133 (494)
...++.+.|+.+. ++.+.|..+++.+ +.++||||+|++. |+.+++.|.. ++.+..+||+| .+.+++|
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 4567888887665 6777788888765 3589999999888 9999999986 79999999999 3346999
Q ss_pred cCCCeeEEEe----chhhhccCCCCc-ccEEEecCCCC------ChhhHHHHhcccCC
Q 011052 134 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN------DPETFVHRSGRTGR 180 (494)
Q Consensus 134 r~g~~~iLVa----T~~~~~GiDip~-v~~VI~~~~P~------~~~~y~qr~GR~gR 180 (494)
++|+++|||| ||+++||||+|+ |++||||++|. ..+.|.||+||+-.
T Consensus 373 ~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 373 EEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 9999999999 699999999999 89999999998 78899999999863
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=190.72 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=131.8
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHH-hccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~ 100 (494)
.+..||.|.-.+-.++.+.|-- .++.+ +...........- .+.+...+|...|...+.. +....++||||+|++.
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l--~v~~I-Pt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~ 440 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNM--EVVQI-PTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQ 440 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCC--cEEEC-CCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHH
Confidence 4667888886666666665532 22322 2222211211211 2234556788877776654 3467899999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC---Cccc-----EEEecCCCCChhhH
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPETF 171 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi---p~v~-----~VI~~~~P~~~~~y 171 (494)
++.++..|.+ ++++.++|+++.+.++..+.++++.+ .|+||||+|+||+|| |+|. |||+|++|.+.+.|
T Consensus 441 se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y 518 (790)
T PRK09200 441 SETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVD 518 (790)
T ss_pred HHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHH
Confidence 9999999986 89999999999999998888888866 699999999999999 7998 99999999999999
Q ss_pred HHHhcccCCCCCCceEEEecChhhH
Q 011052 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 172 ~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
+||+|||||.|.+|.+++|++..|.
T Consensus 519 ~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 519 LQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred HHhhccccCCCCCeeEEEEEcchHH
Confidence 9999999999999999999987653
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-18 Score=187.72 Aligned_cols=139 Identities=27% Similarity=0.417 Sum_probs=120.1
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip 154 (494)
.++..+......+.++||||+|++.++.+++.|.. ++.+..+|+++++.+|..+++.|+.|++.|||||+++++|+|+|
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp 513 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIP 513 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcccc
Confidence 34444444445678999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred cccEEEecCC-----CCChhhHHHHhcccCCCCCCceEEEecCh---------hhHHHHHHHHHHhCCCceecCC
Q 011052 155 NVDLIIHYEL-----PNDPETFVHRSGRTGRAGKEGTAILMFTS---------SQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 155 ~v~~VI~~~~-----P~~~~~y~qr~GR~gR~G~~g~~i~l~~~---------~e~~~l~~le~~~~~~~~~~~~ 215 (494)
++++||++|. |.+.++|+||+|||||. ..|.+++|++. .|...++.++..++.+...++.
T Consensus 514 ~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 514 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 9999998874 78999999999999996 68999999984 5666778888887777665543
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-18 Score=205.70 Aligned_cols=187 Identities=18% Similarity=0.246 Sum_probs=143.6
Q ss_pred CChHHHHHH----HHH----------------------hCCCCCc-EEEEeecCChHHHHHHHHHcCCCcEEEecccccc
Q 011052 4 VGFEEDVEL----ILE----------------------NLPPKRQ-SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDE 56 (494)
Q Consensus 4 ~GF~~~i~~----Il~----------------------~lp~~~q-~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~ 56 (494)
|||.+++.+ |++ .+|+.+| ++++|||+++.-. ...+++++..+.+.. ..
T Consensus 226 lGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~~--~~ 301 (1638)
T PRK14701 226 LGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLGFEVGS--GR 301 (1638)
T ss_pred CCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeEEEecC--CC
Confidence 799999975 543 3456667 5679999986311 123446666666532 23
Q ss_pred ccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhh---HHHHHHHHhc-cCceeeecCCCCHHHHHHHHcc
Q 011052 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRD---ADEVSLALTS-IIASEALHGDISQHQRERTLNG 132 (494)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~---~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~ 132 (494)
....++.+.|+.+....+ ..|..+++.. +..+||||+|++. |+.+++.|.. ++.+..+|++ |..++++
T Consensus 302 ~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 302 SALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred CCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHH
Confidence 455678888887655545 4566777665 4689999999886 4899999986 8999999995 8899999
Q ss_pred ccCCCeeEEEec----hhhhccCCCCc-ccEEEecCCCC---ChhhHHHHh-------------cccCCCCCCceEEEec
Q 011052 133 FRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELPN---DPETFVHRS-------------GRTGRAGKEGTAILMF 191 (494)
Q Consensus 133 Fr~g~~~iLVaT----~~~~~GiDip~-v~~VI~~~~P~---~~~~y~qr~-------------GR~gR~G~~g~~i~l~ 191 (494)
|++|+++||||| ++++||||+|+ |++|||||+|. +.+.|.|.. ||++|.|....+++.+
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~ 453 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDV 453 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHh
Confidence 999999999999 59999999999 99999999999 888776655 9999999888887766
Q ss_pred ChhhHHHHHHH
Q 011052 192 TSSQRRTVRSL 202 (494)
Q Consensus 192 ~~~e~~~l~~l 202 (494)
...+...++.+
T Consensus 454 ~~~~~~~~~~~ 464 (1638)
T PRK14701 454 FPEDVEFLRSI 464 (1638)
T ss_pred HHHHHHHHHHH
Confidence 66666555544
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.7e-18 Score=173.35 Aligned_cols=158 Identities=20% Similarity=0.255 Sum_probs=111.4
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHH--cCCCcEEEeccc--cc---------------cccccceEEEEEEcCc
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKY--LDNPLNIDLVGN--QD---------------EKLAEGIKLYAISTTA 71 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~--l~~p~~i~~~~~--~~---------------~~~~~~i~~~~~~~~~ 71 (494)
..+++..+...+++++|||+|+++....... +..+..+ +.+. .. ..+...+++.+.. ..
T Consensus 172 ~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 249 (357)
T TIGR03158 172 MQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-AP 249 (357)
T ss_pred HHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhccccccccceeccceEEEEEe-CC
Confidence 3444444446899999999999888777654 3433221 1111 00 0011345555544 33
Q ss_pred ccHHHHHHHHHHHh------ccCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEE
Q 011052 72 TSKRTILSDLITVY------AKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~~k~~~L~~ll~~~------~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV 142 (494)
..|.+.+..+++.. .++.++||||+|++.|+.+++.|++ .+.+..+||.+++.+|+++. +..|||
T Consensus 250 ~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~iLV 323 (357)
T TIGR03158 250 DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFDILL 323 (357)
T ss_pred chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCCEEE
Confidence 34444444433322 2457999999999999999999985 35788999999999998664 678999
Q ss_pred echhhhccCCCCcccEEEecCCCCChhhHHHHhcccC
Q 011052 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179 (494)
Q Consensus 143 aT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~g 179 (494)
||+++++|||+|.+ +|| ++ |.+.++|+||+||||
T Consensus 324 aTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 324 GTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99999999999987 566 45 899999999999987
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=196.76 Aligned_cols=150 Identities=23% Similarity=0.405 Sum_probs=115.3
Q ss_pred CChHHH-HHHHH----------------------HhCCCCCc--EEEEeec-CChHHHHHHHHHcCCCcEEEeccccccc
Q 011052 4 VGFEED-VELIL----------------------ENLPPKRQ--SMLFSAT-MPSWVKKLSRKYLDNPLNIDLVGNQDEK 57 (494)
Q Consensus 4 ~GF~~~-i~~Il----------------------~~lp~~~q--~ll~SAT-lp~~i~~l~~~~l~~p~~i~~~~~~~~~ 57 (494)
|||.++ |+.|+ +.+|+++| +++|||| +|..+.. .+++++..+++.. ...
T Consensus 225 lGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~--~~~ 299 (1171)
T TIGR01054 225 LGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG--GSD 299 (1171)
T ss_pred cCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC--ccc
Confidence 899875 66654 34566666 5678999 6766543 3456666666532 233
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCCh---hhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccc
Q 011052 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK---RDADEVSLALTS-IIASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~---~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~F 133 (494)
...++.+.++.+.. +.+.|.++++.+ +.++||||+|+ +.|+++++.|.+ ++.+..+||+|++ .++++|
T Consensus 300 ~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~F 371 (1171)
T TIGR01054 300 TLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKF 371 (1171)
T ss_pred cccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHH
Confidence 45678888775543 345566777665 36899999999 999999999986 7999999999973 689999
Q ss_pred cCCCeeEEEe----chhhhccCCCCc-ccEEEecCCCC
Q 011052 134 RQGKFTVLVA----TDVAARGLDIPN-VDLIIHYELPN 166 (494)
Q Consensus 134 r~g~~~iLVa----T~~~~~GiDip~-v~~VI~~~~P~ 166 (494)
++|+++|||| ||+++||||+|+ |++|||||+|.
T Consensus 372 r~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 372 AEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 9999999999 599999999999 89999999873
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-18 Score=188.69 Aligned_cols=194 Identities=21% Similarity=0.324 Sum_probs=154.0
Q ss_pred hHHHHHH---HHHhCCCCCcEEEEeecCChHHHHHHHHHcC--CCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 6 FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYLD--NPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 6 F~~~i~~---Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~--~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
|+++-.+ ++...| ...+|.++||....+..-+-..|+ +|..+.- . ...+++...............+..
T Consensus 404 FRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~---s--fnR~NL~yeV~~k~~~~~~~~~~~ 477 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFKS---S--FNRPNLKYEVSPKTDKDALLDILE 477 (941)
T ss_pred ccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceecc---c--CCCCCceEEEEeccCccchHHHHH
Confidence 5555443 344444 489999999998888776655554 5553321 1 223444443333332334444445
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
.+..+.+....||||.++.+|++++..|.+ ++.+..+|++|+..+|..+-++|-.++++|+|||=++..|||.|+|+.|
T Consensus 478 ~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 478 ESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred HhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 555566788999999999999999999997 6799999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (494)
|||.+|.+.+.|.|-+|||||.|....|++|+...+...++.+...
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999988877776543
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=185.35 Aligned_cols=168 Identities=20% Similarity=0.207 Sum_probs=131.3
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCcccHHHHH-HHHHHHhccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~L-~~ll~~~~~~~~~IVF~~t~~ 99 (494)
.+.-||.|...+..++.+.|--+ ++.+. .+++.....+- .+.....+|...+ ..+...+..+.++||||+|++
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~--vv~IP---tnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~ 416 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLE--VVVVP---TNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVE 416 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCC--EEEeC---CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 45678888877777777666433 22222 11111111111 1122334566554 445556677889999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCc-------ccEEEecCCCCChhhH
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN-------VDLIIHYELPNDPETF 171 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~-------v~~VI~~~~P~~~~~y 171 (494)
.++.++..|.+ ++++..||++ +.+|+..+..|+.+...|+||||+|+||+||+. ..|||+++.|.+...|
T Consensus 417 ~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~ 494 (745)
T TIGR00963 417 KSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRID 494 (745)
T ss_pred HHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHH
Confidence 99999999986 8999999999 899999999999999999999999999999988 4599999999999999
Q ss_pred HHHhcccCCCCCCceEEEecChhhH
Q 011052 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 172 ~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
.|+.|||||.|.+|.+.+|++..|.
T Consensus 495 ~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 495 NQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred HHHhccccCCCCCcceEEEEeccHH
Confidence 9999999999999999999987764
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=183.22 Aligned_cols=128 Identities=25% Similarity=0.432 Sum_probs=112.6
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP 154 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip 154 (494)
.++..+......+.++||||+|++.++.+++.|.+ ++.+..+|+++++.+|.++++.|++|++.|||||+++++|+|+|
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP 509 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLP 509 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeC
Confidence 34444444445678999999999999999999986 78999999999999999999999999999999999999999999
Q ss_pred cccEEEecC-----CCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 155 NVDLIIHYE-----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 155 ~v~~VI~~~-----~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
++++||++| +|.+..+|+||+|||||. ..|.++++++..+..+.+.|+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHH
Confidence 999999988 899999999999999998 6899999998776555555543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-18 Score=185.23 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=129.2
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCcccHHHHHHHHHHH-hccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~ 99 (494)
.+.-||.|...+..++.+.|--+ ++.+ + .+++.....+ -.+.+....|...+...+.. +..+.++||||+|++
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~l~--v~~I-P--t~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~ 435 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYSLS--VVKI-P--TNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVE 435 (762)
T ss_pred hhcccCCCChhHHHHHHHHhCCC--EEEc-C--CCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHH
Confidence 56678888766666676655322 2222 2 2222222221 12334455677766665543 456789999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---------cccEEEecCCCCChh
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---------NVDLIIHYELPNDPE 169 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---------~v~~VI~~~~P~~~~ 169 (494)
.++.++..|.+ ++++.++|+++.+.++..+.++++.| .|+||||+|+||+||| ++.+|++|++|....
T Consensus 436 ~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ri 513 (762)
T TIGR03714 436 MSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRV 513 (762)
T ss_pred HHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHH
Confidence 99999999986 89999999999999999888888877 6999999999999999 999999999999877
Q ss_pred hHHHHhcccCCCCCCceEEEecChhhH
Q 011052 170 TFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 170 ~y~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
. +||+|||||.|.+|.+++|++..|.
T Consensus 514 d-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 514 D-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred H-HHhhhcccCCCCceeEEEEEccchh
Confidence 7 9999999999999999999988664
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=146.05 Aligned_cols=127 Identities=46% Similarity=0.772 Sum_probs=112.3
Q ss_pred EEEEEEcCcccHHHHHHHHHHHhc-cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeE
Q 011052 63 KLYAISTTATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 63 ~~~~~~~~~~~k~~~L~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~i 140 (494)
.+++...+ ..|.+.+..++.... .+.++||||++++.++.+++.|.+ ...+..+|++++..+|..+++.|+++...|
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 34444443 367777777777653 468999999999999999999986 678999999999999999999999999999
Q ss_pred EEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEe
Q 011052 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 141 LVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l 190 (494)
|++|+++++|+|+|.+++||.+++|++...|+|++||++|.|..+.++++
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999999988887764
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=176.86 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEec-hhhhcc
Q 011052 74 KRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT-DVAARG 150 (494)
Q Consensus 74 k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT-~~~~~G 150 (494)
+..++..++..+ ..+.++||||++++.++.+++.|.+ ++.+..+||+|++++|..+++.|++++..||||| +++++|
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 334444444333 3457899999999999999999986 7899999999999999999999999999999998 899999
Q ss_pred CCCCcccEEEecCCCCChhhHHHHhcccCCCCCCc
Q 011052 151 LDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEG 185 (494)
Q Consensus 151 iDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g 185 (494)
+|+|++++||++.+|.+...|+||+||++|.+...
T Consensus 409 ~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 409 ISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999999999999999987544
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.9e-18 Score=172.43 Aligned_cols=122 Identities=33% Similarity=0.562 Sum_probs=106.0
Q ss_pred ccHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-cCcee-ee--------cCCCCHHHHHHHHccccCCCe
Q 011052 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASE-AL--------HGDISQHQRERTLNGFRQGKF 138 (494)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~-~l--------hg~~~~~~R~~~l~~Fr~g~~ 138 (494)
..|++.+..+++.+ ..+.++|||++.+++|+.|.+.|.+ +..+. .+ ..||+|.+|.+++++|++|.+
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~ 426 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEY 426 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCc
Confidence 35777777777655 2457999999999999999999986 33331 22 257999999999999999999
Q ss_pred eEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChh
Q 011052 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 139 ~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~ 194 (494)
+|||||+++++|||||++++||.|++-.++-.++||.|||||. +.|.+++|++..
T Consensus 427 nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 427 NVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred eEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 9999999999999999999999999999999999999999998 799999998876
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=173.29 Aligned_cols=211 Identities=21% Similarity=0.315 Sum_probs=144.1
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc------cHHHHHHHHHH
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------SKRTILSDLIT 83 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~------~k~~~L~~ll~ 83 (494)
++.+....+ +.|.|.+|||+.+. ..+++..........++..... ...++..+..... .....+..+.+
T Consensus 174 LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~---k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~ 248 (814)
T COG1201 174 LERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA---KKLEIKVISPVEDLIYDEELWAALYERIAE 248 (814)
T ss_pred HHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC---CcceEEEEecCCccccccchhHHHHHHHHH
Confidence 444445555 89999999999643 3444433333212222211111 2222222222221 11223333433
Q ss_pred HhccCCcEEEEcCChhhHHHHHHHHhcc--CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 84 VYAKGGKTIVFTQTKRDADEVSLALTSI--IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~~--~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
.......+|||+||+..|+.++..|.+. ..+.++||.++.++|..+.++|++|+.+++|||..++-|||+.+|++|||
T Consensus 249 ~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq 328 (814)
T COG1201 249 LVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ 328 (814)
T ss_pred HHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE
Confidence 4444569999999999999999999974 68999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHhcccCC-CCCCceEEEecChhhH--HHHHHHHHHhCCCceecCCCCH-HHHHHHH
Q 011052 162 YELPNDPETFVHRSGRTGR-AGKEGTAILMFTSSQR--RTVRSLERDVGCKFEFVSPPVV-EDVLESS 225 (494)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR-~G~~g~~i~l~~~~e~--~~l~~le~~~~~~~~~~~~p~~-~~i~~~~ 225 (494)
|..|.++..++||+||+|+ .+.....+++....+. ...........-+++.+.+|.. -+++..+
T Consensus 329 ~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ 396 (814)
T COG1201 329 LGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQ 396 (814)
T ss_pred eCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHH
Confidence 9999999999999999996 5666777777766432 2233334445556665555533 3444443
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-17 Score=179.08 Aligned_cols=236 Identities=19% Similarity=0.311 Sum_probs=178.4
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-cc-HHHHHHHHHHHh--
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TS-KRTILSDLITVY-- 85 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~-k~~~L~~ll~~~-- 85 (494)
+..++...+++.++|+||||+..+ ++. +|+.+..++.+.+. .-.++.+|..... .. -.+.+...+..+
T Consensus 185 lk~~~~~rr~DLKiIimSATld~~--rfs-~~f~~apvi~i~GR-----~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~ 256 (845)
T COG1643 185 LKDLLARRRDDLKLIIMSATLDAE--RFS-AYFGNAPVIEIEGR-----TYPVEIRYLPEAEADYILLDAIVAAVDIHLR 256 (845)
T ss_pred HHHHHhhcCCCceEEEEecccCHH--HHH-HHcCCCCEEEecCC-----ccceEEEecCCCCcchhHHHHHHHHHHHhcc
Confidence 445677777789999999999543 444 46777666766432 1235555543332 23 344455555544
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
...+.+|||.+..++.+.+++.|.+ .+.+++|||.|+.+++.++++.-..++.+|++||++|+.+|.||+|.+||
T Consensus 257 ~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 257 EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEe
Confidence 3457999999999999999999985 35689999999999999999998888888999999999999999999999
Q ss_pred ecCC------------------CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHH
Q 011052 161 HYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222 (494)
Q Consensus 161 ~~~~------------------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~ 222 (494)
+-+. |.+.++..||+|||||.+ +|.||-+|+..+.. ..+.-+..||+
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~--------------~~~~~t~PEIl 401 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL--------------AFPEFTLPEIL 401 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH--------------hcccCCChhhh
Confidence 6553 457788899999999997 99999999986632 22334567899
Q ss_pred HHHHHHHHHHHccCCcc-chhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCC
Q 011052 223 ESSAEQVVATLNGVHPE-SVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 223 ~~~~~~~~~~l~~~~~~-~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~ 273 (494)
...+..+...+++.... +...| .+++.+....+.+|+..|..+...
T Consensus 402 rtdLs~~vL~l~~~G~~~d~~~f-----~fld~P~~~~i~~A~~~L~~LGAl 448 (845)
T COG1643 402 RTDLSGLVLQLKSLGIGQDIAPF-----PFLDPPPEAAIQAALTLLQELGAL 448 (845)
T ss_pred hcchHHHHHHHHhcCCCCCcccC-----ccCCCCChHHHHHHHHHHHHcCCc
Confidence 99999999999887663 55555 567788888888887777644433
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=179.72 Aligned_cols=167 Identities=22% Similarity=0.234 Sum_probs=129.1
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCcccHHHHHHHHH-HHhccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLI-TVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll-~~~~~~~~~IVF~~t~~ 99 (494)
++.-||.|...+..++.+.|--+ ++.+ +. +++.....+ -.+......|...|...+ ..+..+.++||||+|++
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~--vv~I-Pt--nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~ 451 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME--VITI-PT--NRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIE 451 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEEc-CC--CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 45677888877666666656322 2322 21 221111111 112233456776666655 34456789999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC---Cccc-----EEEecCCCCChhh
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---PNVD-----LIIHYELPNDPET 170 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi---p~v~-----~VI~~~~P~~~~~ 170 (494)
.++.++..|.+ ++++.+||+++.+.+++.+.++++.|. |+|||++|+||+|| ++|. |||+++.|.+...
T Consensus 452 ~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri 529 (796)
T PRK12906 452 SSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRI 529 (796)
T ss_pred HHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHH
Confidence 99999999986 799999999999888888888888776 99999999999999 4899 9999999999999
Q ss_pred HHHHhcccCCCCCCceEEEecChhh
Q 011052 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 171 y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
|.|+.|||||.|.+|.+.+|++..|
T Consensus 530 ~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 530 DNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHHHhhhhccCCCCcceEEEEeccc
Confidence 9999999999999999999988765
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=162.47 Aligned_cols=175 Identities=24% Similarity=0.351 Sum_probs=136.9
Q ss_pred HHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHh-------c
Q 011052 14 LENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVY-------A 86 (494)
Q Consensus 14 l~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-------~ 86 (494)
|+.+-++.|.|.+|||+.+. ..+++++-.+.+..+ ..+.+--.|..++....+|.+++..+.+.. .
T Consensus 366 Lr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~------~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 366 LRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD------ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred HHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec------CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 44555689999999999654 456665533333221 122222235555566788999998887653 1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe---c
Q 011052 87 KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH---Y 162 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~---~ 162 (494)
-.+++|||++++..|..++..|. +++++.++|++|++.+|..+...|.++++.++|+|-+++.|+|+|.-.+|.. +
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaM 518 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAM 518 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHc
Confidence 24699999999999999999998 4899999999999999999999999999999999999999999998765552 4
Q ss_pred CCC-CChhhHHHHhcccCCCC--CCceEEEecChhh
Q 011052 163 ELP-NDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (494)
Q Consensus 163 ~~P-~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e 195 (494)
+.- -++..|.||+||+||.+ ..|.+|+++.+..
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~ 554 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGK 554 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCCh
Confidence 444 38999999999999988 5699999987754
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9e-17 Score=169.02 Aligned_cols=234 Identities=19% Similarity=0.323 Sum_probs=179.4
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHH-HHHHHHHHHh--cc
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLITVY--AK 87 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~L~~ll~~~--~~ 87 (494)
++|++.- ++.++|+||||+.. . ....|+.+...+.+.+. ...++.+|...+..+.. +.+..+++.+ .+
T Consensus 187 Kki~~~R-~~LklIimSATlda--~-kfS~yF~~a~i~~i~GR-----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~ 257 (674)
T KOG0922|consen 187 KKILKKR-PDLKLIIMSATLDA--E-KFSEYFNNAPILTIPGR-----TFPVEILYLKEPTADYVDAALITVIQIHLTEP 257 (674)
T ss_pred HHHHhcC-CCceEEEEeeeecH--H-HHHHHhcCCceEeecCC-----CCceeEEeccCCchhhHHHHHHHHHHHHccCC
Confidence 3444443 46799999999953 3 34557777666766432 23366677665555543 3344444433 45
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc---C------ceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI---I------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~---~------~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.+.+|||.+..++++.+++.|.+. . -+.++||.|+.+++.++++.-..|..+|++||++|+..|.||.|.+
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~Y 337 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRY 337 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEE
Confidence 679999999999999999999742 1 2468999999999999999999999999999999999999999999
Q ss_pred EEecCC------------------CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH
Q 011052 159 IIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 159 VI~~~~------------------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~ 220 (494)
||+.++ |.+.++-.||+||+||.+ +|.|+-+|+..+. +.++..+..|
T Consensus 338 VVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~--------------~~~~~~~~PE 402 (674)
T KOG0922|consen 338 VVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY--------------DKMPLQTVPE 402 (674)
T ss_pred EEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH--------------hhcccCCCCc
Confidence 996553 567888899999999997 9999999998874 2334455667
Q ss_pred HHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCC
Q 011052 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 221 i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~ 273 (494)
|....+..+...|++...+++-.| .+++.+.++.+.+||..|.-+...
T Consensus 403 I~R~~Ls~~vL~Lkalgi~d~l~F-----~f~d~P~~~~l~~AL~~L~~lgal 450 (674)
T KOG0922|consen 403 IQRVNLSSAVLQLKALGINDPLRF-----PFIDPPPPEALEEALEELYSLGAL 450 (674)
T ss_pred eeeechHHHHHHHHhcCCCCcccC-----CCCCCCChHHHHHHHHHHHhcCcc
Confidence 788888888888888777776666 678888999999999998754443
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=175.65 Aligned_cols=169 Identities=21% Similarity=0.232 Sum_probs=128.8
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHH-hccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~ 100 (494)
++--||.|...+-.++.+.|--+ ++. ++........+... .+......|...|...+.. +..+.++||||+|++.
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~--Vv~-IPTnrP~~R~D~~d-~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~ 610 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLD--VVV-IPTNKPIVRKDMDD-LVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEV 610 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCc--EEE-CCCCCCcceecCCC-eEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHH
Confidence 34567777766666666655322 222 22111111111111 2223445677777766644 4567899999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---ccc-----EEEecCCCCChhhH
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---~v~-----~VI~~~~P~~~~~y 171 (494)
++.++..|.. ++++.+||+ .+.+|+..+.+|+.+...|+||||+|+||+||+ .|. +||+++.|.+...|
T Consensus 611 sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid 688 (1025)
T PRK12900 611 SETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRID 688 (1025)
T ss_pred HHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHH
Confidence 9999999985 899999997 699999999999999999999999999999998 564 45999999999999
Q ss_pred HHHhcccCCCCCCceEEEecChhhH
Q 011052 172 VHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 172 ~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
.|+.|||||.|.+|.+++|++..|.
T Consensus 689 ~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 689 RQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred HHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999999999999999988764
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-16 Score=163.18 Aligned_cols=242 Identities=18% Similarity=0.286 Sum_probs=183.0
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH-HHHHHHh--ccCCcEEEEc
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVY--AKGGKTIVFT 95 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~--~~~~~~IVF~ 95 (494)
++..+|+.||||..+ ++ ..|+.+..+..+.+. .-.+..+|-..+..+.+++. ..+++.+ .+.+.+|||.
T Consensus 409 pdLKllIsSAT~DAe--kF-S~fFDdapIF~iPGR-----RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFl 480 (902)
T KOG0923|consen 409 PDLKLLISSATMDAE--KF-SAFFDDAPIFRIPGR-----RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFL 480 (902)
T ss_pred CcceEEeeccccCHH--HH-HHhccCCcEEeccCc-----ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEe
Confidence 688999999999543 44 457776665555432 12355667677776665543 3444433 3567999999
Q ss_pred CChhhHHHHHHHHhc----------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC-
Q 011052 96 QTKRDADEVSLALTS----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL- 164 (494)
Q Consensus 96 ~t~~~~~~l~~~L~~----------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~- 164 (494)
.-.++.+.+.+.|.. .+-++++|+.||+..+.++++..-.|..+|++||++|+..|.|++|.+||+-++
T Consensus 481 tGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~ 560 (902)
T KOG0923|consen 481 TGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFV 560 (902)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccc
Confidence 999988887777752 256899999999999999999999999999999999999999999999996442
Q ss_pred -----------------CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHH
Q 011052 165 -----------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227 (494)
Q Consensus 165 -----------------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~ 227 (494)
|.+..+-.||+||+||.| +|.|+-+|+...+ .+.+| .+ +..+|....+.
T Consensus 561 K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY--~~eLE--------~~---t~PEIqRtnL~ 626 (902)
T KOG0923|consen 561 KQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAY--EHELE--------EM---TVPEIQRTNLG 626 (902)
T ss_pred cccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhh--hhhhc--------cC---CCcceeeccch
Confidence 567788899999999998 9999999997553 22222 22 23456677788
Q ss_pred HHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCce
Q 011052 228 QVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 287 (494)
Q Consensus 228 ~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~ 287 (494)
.+...|+++...++-.| .+++.+..+.|..||..|..+......-.|+...+.|+
T Consensus 627 nvVL~LkSLGI~Dl~~F-----dFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMa 681 (902)
T KOG0923|consen 627 NVVLLLKSLGIHDLIHF-----DFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMA 681 (902)
T ss_pred hHHHHHHhcCcchhccc-----ccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhh
Confidence 88888999888887777 78899999999999999987776655555554444444
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-16 Score=128.05 Aligned_cols=76 Identities=39% Similarity=0.768 Sum_probs=72.2
Q ss_pred HHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCC
Q 011052 107 ALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG 182 (494)
Q Consensus 107 ~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G 182 (494)
.|+. ++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|++++||++++|+++..|+|++||++|.|
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3443 789999999999999999999999999999999999999999999999999999999999999999999976
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=168.10 Aligned_cols=107 Identities=25% Similarity=0.449 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc----CceeeecCCCCHHHH----HHHHccc-cCCC---eeEE
Q 011052 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQR----ERTLNGF-RQGK---FTVL 141 (494)
Q Consensus 74 k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~lhg~~~~~~R----~~~l~~F-r~g~---~~iL 141 (494)
...++..+++....++++||||||++.|+++++.|++. ..+..+|+.+++.+| +++++.| ++++ ..||
T Consensus 546 ~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~IL 625 (878)
T PRK09694 546 DLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRIL 625 (878)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEE
Confidence 34566667766667789999999999999999999863 479999999999999 4577888 6665 4799
Q ss_pred EechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCC
Q 011052 142 VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 142 VaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~ 183 (494)
|||+++++|||| +++++|....| .+.|+||+||++|.+.
T Consensus 626 VaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 626 VATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999999 58999998888 6899999999999875
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-16 Score=158.46 Aligned_cols=179 Identities=22% Similarity=0.351 Sum_probs=138.3
Q ss_pred CCCcEEEEeecCChHHHHHHH--HHcCCCcEEEeccccccccccceEEEEEEc---CcccHHHHHHHHHHH-hc------
Q 011052 19 PKRQSMLFSATMPSWVKKLSR--KYLDNPLNIDLVGNQDEKLAEGIKLYAIST---TATSKRTILSDLITV-YA------ 86 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~--~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~---~~~~k~~~L~~ll~~-~~------ 86 (494)
++...+.++||....+++-+- ..|++|+.|--.+ ....++ +|-.. .-.+-...|.++... +.
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP----~FR~NL--FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~ 248 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP----TFRDNL--FYDNHMKSFITDCLTVLADFSSSNLGKHEKAS 248 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc----chhhhh--hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhh
Confidence 478899999999988887443 3456776542111 111111 11000 001222333333211 11
Q ss_pred -----cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 87 -----KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 87 -----~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
..+..||||.|++.|++++-.|.. ++.+..+|.++...+|.++-++|.++++.|++||..+.+|+|-|+|++||
T Consensus 249 ~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi 328 (641)
T KOG0352|consen 249 QNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI 328 (641)
T ss_pred cCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE
Confidence 024679999999999999999985 89999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHH
Q 011052 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le 203 (494)
|+++|.+...|.|..||+||.|+...|-++|...|...+..|.
T Consensus 329 HW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 329 HWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred ecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999999999999988777664
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=164.64 Aligned_cols=119 Identities=24% Similarity=0.339 Sum_probs=101.2
Q ss_pred cHHHHHHHHHHHhc-cCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCC-CeeEEEechhhhcc
Q 011052 73 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAARG 150 (494)
Q Consensus 73 ~k~~~L~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~iLVaT~~~~~G 150 (494)
.|...+..++..+. .+.++||||.+.+.++.++..|. +..+||++++.+|.+++++|+++ .+++||+|+++.+|
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeG 555 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTS 555 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccc
Confidence 45566666776552 56799999999999998888873 56799999999999999999875 78999999999999
Q ss_pred CCCCcccEEEecCCC-CChhhHHHHhcccCCCCCCceE-------EEecChhh
Q 011052 151 LDIPNVDLIIHYELP-NDPETFVHRSGRTGRAGKEGTA-------ILMFTSSQ 195 (494)
Q Consensus 151 iDip~v~~VI~~~~P-~~~~~y~qr~GR~gR~G~~g~~-------i~l~~~~e 195 (494)
||+|++++||+++.| .+..+|+||+||++|.+..+.+ |.|+++..
T Consensus 556 IDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 556 IDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred cCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 999999999999998 4999999999999999866654 66666544
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=172.90 Aligned_cols=121 Identities=36% Similarity=0.562 Sum_probs=108.2
Q ss_pred ccHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCC--------CCHHHHHHHHccccCCCee
Q 011052 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGD--------ISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~--------~~~~~R~~~l~~Fr~g~~~ 139 (494)
..|.+.|.++|... .++.++||||++++.|+.|++.|.. ++.+..+||. |++.+|.+++++|++++++
T Consensus 346 ~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~ 425 (773)
T PRK13766 346 HPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN 425 (773)
T ss_pred ChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC
Confidence 45777788887664 3568999999999999999999965 7788888886 9999999999999999999
Q ss_pred EEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecCh
Q 011052 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 140 iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
|||||+++++|+|+|++++||+||+|+++..|+||+||+||.+ .+.+++++..
T Consensus 426 vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~ 478 (773)
T PRK13766 426 VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAK 478 (773)
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeC
Confidence 9999999999999999999999999999999999999999987 4777777754
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=161.22 Aligned_cols=123 Identities=33% Similarity=0.525 Sum_probs=104.8
Q ss_pred ccHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc----cCceeeec--------CCCCHHHHHHHHccccCC
Q 011052 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS----IIASEALH--------GDISQHQRERTLNGFRQG 136 (494)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lh--------g~~~~~~R~~~l~~Fr~g 136 (494)
..|++.|..++..+ .++.++||||+||+.|..|...|.. +++...+- -+|+|.++.+++++|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 56777777766554 3567999999999999999999873 23443333 389999999999999999
Q ss_pred CeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhH
Q 011052 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 137 ~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
+++|||||+++++||||+.|++||-||.-.++-..+||.|| ||+- .|.|+++++..+.
T Consensus 474 ~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~-ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 474 EINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR-NSKCVLLTTGSEV 531 (746)
T ss_pred CccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc-CCeEEEEEcchhH
Confidence 99999999999999999999999999999999999999999 9984 8888888875443
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=161.89 Aligned_cols=175 Identities=22% Similarity=0.329 Sum_probs=124.5
Q ss_pred CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEc------CcccHHHHHHHHHHHhccCCcE
Q 011052 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAIST------TATSKRTILSDLITVYAKGGKT 91 (494)
Q Consensus 18 p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~------~~~~k~~~L~~ll~~~~~~~~~ 91 (494)
....|++.+|||+|+- .+++...-.++.....-.............++... +.......+..++.....++++
T Consensus 178 ~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qv 256 (766)
T COG1204 178 NELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQV 256 (766)
T ss_pred CcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeE
Confidence 3458999999999874 45555332233311111111111111111222111 1123355667777777888999
Q ss_pred EEEcCChhhHHHHHHHHhcc--------------------------------------CceeeecCCCCHHHHHHHHccc
Q 011052 92 IVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLNGF 133 (494)
Q Consensus 92 IVF~~t~~~~~~l~~~L~~~--------------------------------------~~~~~lhg~~~~~~R~~~l~~F 133 (494)
||||+++..+...+..|.+. ..+..+|++|+..+|..+.+.|
T Consensus 257 LvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~F 336 (766)
T COG1204 257 LVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAF 336 (766)
T ss_pred EEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHH
Confidence 99999999999998888620 0255789999999999999999
Q ss_pred cCCCeeEEEechhhhccCCCCcccEEE----ecC-----CCCChhhHHHHhcccCCCC--CCceEEEecCh
Q 011052 134 RQGKFTVLVATDVAARGLDIPNVDLII----HYE-----LPNDPETFVHRSGRTGRAG--KEGTAILMFTS 193 (494)
Q Consensus 134 r~g~~~iLVaT~~~~~GiDip~v~~VI----~~~-----~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~ 193 (494)
+.|+++|||||+.++.|+|+|.-.+|| -|+ .+.++-+|+|+.|||||.| ..|.++++.+.
T Consensus 337 r~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 337 RKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATS 407 (766)
T ss_pred hcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecC
Confidence 999999999999999999999988888 366 5678899999999999998 55777777733
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-14 Score=153.07 Aligned_cols=177 Identities=19% Similarity=0.330 Sum_probs=132.2
Q ss_pred HHHhCCC-CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcE
Q 011052 13 ILENLPP-KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKT 91 (494)
Q Consensus 13 Il~~lp~-~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 91 (494)
.|..... .+.+++||||.=+....+. .+.+ ..+.+. .+.++..-...-...+.+.+.+++..+.....++.++
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgD-ldvS~I---dElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQa 476 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALT--AFGD-LDVSII---DELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQA 476 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHH--Hhcc-ccchhh---ccCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEE
Confidence 3444444 6789999999644433333 3332 222222 1112222222233345567778888888888888999
Q ss_pred EEEcCChh--------hHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 92 IVFTQTKR--------DADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 92 IVF~~t~~--------~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
.|.||-.+ .|+.+++.|+. .+.+..+||.|+..++++++++|++|+++|||||.|.+.|||+|+.+++|
T Consensus 477 Y~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV 556 (677)
T COG1200 477 YVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV 556 (677)
T ss_pred EEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE
Confidence 99999765 45566777774 35689999999999999999999999999999999999999999999988
Q ss_pred ecCCC-CChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 161 HYELP-NDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 161 ~~~~P-~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
.++.- --.+++.|-.||+||....+.|++++.+..
T Consensus 557 Ie~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 557 IENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 87754 367889999999999999999999998766
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=151.04 Aligned_cols=225 Identities=19% Similarity=0.303 Sum_probs=164.7
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHh--ccCCcEEEEc
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--AKGGKTIVFT 95 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~--~~~~~~IVF~ 95 (494)
.+..+|++||||. .++++. |+.+.....+.+.. -.++..|...+.++..+ ++.+.+..+ ...+.+|||.
T Consensus 499 rdlKliVtSATm~--a~kf~n-fFgn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfm 570 (1042)
T KOG0924|consen 499 RDLKLIVTSATMD--AQKFSN-FFGNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFM 570 (1042)
T ss_pred ccceEEEeecccc--HHHHHH-HhCCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEec
Confidence 4779999999994 556655 55554445443321 22455565555555443 344444443 3457899999
Q ss_pred CChhhHHHHHHHHhc-----------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecC-
Q 011052 96 QTKRDADEVSLALTS-----------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE- 163 (494)
Q Consensus 96 ~t~~~~~~l~~~L~~-----------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~- 163 (494)
+..+.++..+..+.. .+.+.++++.||+.-+.++++.-..+..+++|||++|+..|.||++.+||+.+
T Consensus 571 tGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy 650 (1042)
T KOG0924|consen 571 TGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGY 650 (1042)
T ss_pred CCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCc
Confidence 988877766665542 35789999999999999999999999999999999999999999999999766
Q ss_pred -----------------CCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHH
Q 011052 164 -----------------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSA 226 (494)
Q Consensus 164 -----------------~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~ 226 (494)
.|.+...-.||+|||||.| +|.||-+|+.... ...+.+.+..||....+
T Consensus 651 ~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay-------------~~eml~stvPEIqRTNl 716 (1042)
T KOG0924|consen 651 CKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAY-------------KNEMLPSTVPEIQRTNL 716 (1042)
T ss_pred eeeeecccccccceeEEEechhccchhhccccCCCC-CcceeeehhhhHH-------------HhhcccCCCchhhhcch
Confidence 3567777899999999998 9999999987542 11233445567788888
Q ss_pred HHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCC
Q 011052 227 EQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF 270 (494)
Q Consensus 227 ~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~ 270 (494)
..+...|+++.-+++..| .+++.+..+.+..++-.|.-+
T Consensus 717 ~nvVLlLkslgV~dll~F-----dFmD~Pped~~~~sly~Lw~L 755 (1042)
T KOG0924|consen 717 SNVVLLLKSLGVDDLLKF-----DFMDPPPEDNLLNSLYQLWTL 755 (1042)
T ss_pred hhHHHHHHhcChhhhhCC-----CcCCCCHHHHHHHHHHHHHHh
Confidence 888888888776666666 566777777777777776533
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.7e-14 Score=148.67 Aligned_cols=93 Identities=27% Similarity=0.461 Sum_probs=78.3
Q ss_pred HHHHHHHHhcc---CceeeecCCCCHHHH--HHHHccccCCCeeEEEechhhhccCCCCcccEEE--ecCC----CC---
Q 011052 101 ADEVSLALTSI---IASEALHGDISQHQR--ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYEL----PN--- 166 (494)
Q Consensus 101 ~~~l~~~L~~~---~~~~~lhg~~~~~~R--~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI--~~~~----P~--- 166 (494)
++.+++.|.+. .++..+|+++++.++ ++++++|++|+.+|||+|+++++|+|+|+|++|+ ++|. |.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 57888888763 578899999988766 8999999999999999999999999999999875 6664 32
Q ss_pred ---ChhhHHHHhcccCCCCCCceEEEecCh
Q 011052 167 ---DPETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 167 ---~~~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
....|+|++||+||.++.|.+++....
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 246789999999999999999865433
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=150.53 Aligned_cols=246 Identities=19% Similarity=0.247 Sum_probs=170.8
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccc-----------c---ccceEEE----
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEK-----------L---AEGIKLY---- 65 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~-----------~---~~~i~~~---- 65 (494)
..|.--+.+.+-...++.++||||||+.. +..+.|+....++.+.+...+. + .....++
T Consensus 303 ~DflLi~lk~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~ 379 (924)
T KOG0920|consen 303 TDFLLILLKDLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPE 379 (924)
T ss_pred cccHHHHHHHHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccc
Confidence 34444443434344579999999999963 3445566666666553321100 0 0000011
Q ss_pred --------EEEcCcccHHHHHHHHHHHhc---cCCcEEEEcCChhhHHHHHHHHhc--------cCceeeecCCCCHHHH
Q 011052 66 --------AISTTATSKRTILSDLITVYA---KGGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQR 126 (494)
Q Consensus 66 --------~~~~~~~~k~~~L~~ll~~~~---~~~~~IVF~~t~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~R 126 (494)
......+...+++.++++.+. ..+.+|||.|..++...+++.|.. .+-+.++|+.|+..++
T Consensus 380 ~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ 459 (924)
T KOG0920|consen 380 RSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQ 459 (924)
T ss_pred cCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHH
Confidence 000011234556666666553 357899999999999999999962 2567899999999999
Q ss_pred HHHHccccCCCeeEEEechhhhccCCCCcccEEEec--------CCCC----------ChhhHHHHhcccCCCCCCceEE
Q 011052 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY--------ELPN----------DPETFVHRSGRTGRAGKEGTAI 188 (494)
Q Consensus 127 ~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~--------~~P~----------~~~~y~qr~GR~gR~G~~g~~i 188 (494)
..+++..-.|..+|++||++|+..|.|++|-+||+. |+-. +...-.||.||+||. .+|.||
T Consensus 460 ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy 538 (924)
T KOG0920|consen 460 QAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICY 538 (924)
T ss_pred HHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeE
Confidence 999999999999999999999999999999999954 4332 345558999999998 599999
Q ss_pred EecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHc
Q 011052 189 LMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (494)
Q Consensus 189 ~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~ 268 (494)
-+|+......+ ...-+..|++...++++...++.+....+..| ..++++.+..+++..|+..+.
T Consensus 539 ~L~~~~~~~~~-------------~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~f---LskaldpP~~~~v~~a~~~L~ 602 (924)
T KOG0920|consen 539 HLYTRSRYEKL-------------MLAYQLPEILRTPLEELCLHIKVLEQGSIKAF---LSKALDPPPADAVDLAIERLK 602 (924)
T ss_pred Eeechhhhhhc-------------ccccCChHHHhChHHHhhheeeeccCCCHHHH---HHHhcCCCChHHHHHHHHHHH
Confidence 99987653221 11124567888888888888887666666644 447788888888888877775
Q ss_pred C
Q 011052 269 G 269 (494)
Q Consensus 269 g 269 (494)
-
T Consensus 603 ~ 603 (924)
T KOG0920|consen 603 Q 603 (924)
T ss_pred H
Confidence 3
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=149.91 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=82.4
Q ss_pred hHHHHHHHHhc---cCceeeecCCCCH--HHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE--ecCCCCC-----
Q 011052 100 DADEVSLALTS---IIASEALHGDISQ--HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII--HYELPND----- 167 (494)
Q Consensus 100 ~~~~l~~~L~~---~~~~~~lhg~~~~--~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI--~~~~P~~----- 167 (494)
.++.+++.|.+ ...+..+|+++.+ .++++++++|++|+.+|||+|+++++|+|+|+|++|+ +.|.+-+
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 45677888876 4578899999975 5789999999999999999999999999999999985 5555543
Q ss_pred -----hhhHHHHhcccCCCCCCceEEEecChhhHHHHHH
Q 011052 168 -----PETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS 201 (494)
Q Consensus 168 -----~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~ 201 (494)
...|+|++||+||.++.|.+++.....+...++.
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~ 556 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQA 556 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHH
Confidence 3678999999999999999998665444343333
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=136.49 Aligned_cols=187 Identities=22% Similarity=0.328 Sum_probs=143.8
Q ss_pred hHHHHH--HHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011052 6 FEEDVE--LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (494)
Q Consensus 6 F~~~i~--~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~ 83 (494)
|++|-. .||+.--+...++-++||....+..-++..+.-...+.+.. .. ..+++.+.... .+....+.++++.+
T Consensus 234 fr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-~f--nr~nl~yev~q-kp~n~dd~~edi~k 309 (695)
T KOG0353|consen 234 FRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-GF--NRPNLKYEVRQ-KPGNEDDCIEDIAK 309 (695)
T ss_pred cCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-cc--CCCCceeEeee-CCCChHHHHHHHHH
Confidence 444433 34544446889999999999888877776654222222211 11 12334433333 33344455555555
Q ss_pred Hh---ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 84 VY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 84 ~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
.+ -.+...||||-++++|++++..|+. ++.+-.+|..|.+.++.-+-+.|-.|+++|+|||-.+..|||-|+|++|
T Consensus 310 ~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfv 389 (695)
T KOG0353|consen 310 LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFV 389 (695)
T ss_pred HhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEE
Confidence 44 3456789999999999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHH-------------------------------------------HhcccCCCCCCceEEEecChhhH
Q 011052 160 IHYELPNDPETFVH-------------------------------------------RSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 160 I~~~~P~~~~~y~q-------------------------------------------r~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
||..+|.+++.|.| ..||+||.+.+..||++|.-.|.
T Consensus 390 ihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 390 IHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred EecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 99999999999999 78999999999999999876554
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-14 Score=113.09 Aligned_cols=80 Identities=53% Similarity=0.867 Sum_probs=74.3
Q ss_pred HHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCC
Q 011052 103 EVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 103 ~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (494)
.+++.|.. .+.+..+||++++.+|..+++.|+++...|||+|+++++|+|+|.+++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45566654 68899999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 011052 182 G 182 (494)
Q Consensus 182 G 182 (494)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=132.57 Aligned_cols=231 Identities=17% Similarity=0.326 Sum_probs=172.7
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH-HHHHHHh--c
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVY--A 86 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~--~ 86 (494)
+++++..-| +..+|.||||+-. ...+.|+.++..+.+.+ ...++.+|...+..+.++.. ..+++.+ .
T Consensus 182 lk~v~~~rp-dLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg------~~PvEi~Yt~e~erDylEaairtV~qih~~e 251 (699)
T KOG0925|consen 182 LKEVVRNRP-DLKLVVMSATLDA---EKFQRYFGNAPLLAVPG------THPVEIFYTPEPERDYLEAAIRTVLQIHMCE 251 (699)
T ss_pred HHHHHhhCC-CceEEEeecccch---HHHHHHhCCCCeeecCC------CCceEEEecCCCChhHHHHHHHHHHHHHhcc
Confidence 344455554 8999999999843 23466888887777642 23356677666666665544 4444444 3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc----------CceeeecCCCCHHHHHHHHccccC---C--CeeEEEechhhhccC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI----------IASEALHGDISQHQRERTLNGFRQ---G--KFTVLVATDVAARGL 151 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~----------~~~~~lhg~~~~~~R~~~l~~Fr~---g--~~~iLVaT~~~~~Gi 151 (494)
..+.+|||....++.+..++.+.+. ++|.+|| ++++.++++.-.. + ..+|+|+|++++..+
T Consensus 252 e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsl 327 (699)
T KOG0925|consen 252 EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSL 327 (699)
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheee
Confidence 4679999999999999999988731 5788899 5566666654432 1 357999999999999
Q ss_pred CCCcccEEEecCC------------------CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceec
Q 011052 152 DIPNVDLIIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 152 Dip~v~~VI~~~~------------------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (494)
.++.|.+||+-++ |.+..+-.||.||+||. ++|.|+.+|++.-. . ..+
T Consensus 328 tidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~~----------~---~em 393 (699)
T KOG0925|consen 328 TIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF----------E---KEM 393 (699)
T ss_pred eeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHhh----------h---hcC
Confidence 9999999996553 66788889999999997 59999999987542 1 124
Q ss_pred CCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCC
Q 011052 214 SPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRP 273 (494)
Q Consensus 214 ~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~ 273 (494)
.+.+..+++++.+..+...++++..+.+..| .+++.+.++.++.||--+.-+...
T Consensus 394 ~~~typeilrsNL~s~VL~LKklgI~dlvhf-----dfmDpPAPEtLMrALE~LnYLaaL 448 (699)
T KOG0925|consen 394 QPQTYPEILRSNLSSTVLQLKKLGIDDLVHF-----DFMDPPAPETLMRALEVLNYLAAL 448 (699)
T ss_pred CCCCcHHHHHHhhHHHHHHHHhcCcccccCC-----cCCCCCChHHHHHHHHHhhhhhhh
Confidence 4556789999999999999999988888888 788999999999998887644433
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=134.44 Aligned_cols=168 Identities=25% Similarity=0.345 Sum_probs=131.6
Q ss_pred CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChh
Q 011052 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 20 ~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~ 99 (494)
..|+|.+|||..++-.+.. ...+++-+-.+...+.+.++ +.....+..+++..+-+....+.++||-+=|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s-----~~~vveQiIRPTGLlDP~ie---vRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS-----GGNVVEQIIRPTGLLDPEIE---VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhc-----cCceeEEeecCCCCCCCcee---eecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 4699999999877644433 11233322222222233333 233344566677777666677899999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecC-----CCCChhhHHH
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-----LPNDPETFVH 173 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~-----~P~~~~~y~q 173 (494)
+|+.|.++|.+ ++++..+|+++..-+|.+++...|.|.++|||.-+.+-.|||+|.|.+|..+| +..+..+++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 99999999996 89999999999999999999999999999999999999999999999998766 5678999999
Q ss_pred HhcccCCCCCCceEEEecChhhH
Q 011052 174 RSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 174 r~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
-+|||+|-- .|.+|++.+.-..
T Consensus 538 tIGRAARN~-~GkvIlYAD~iT~ 559 (663)
T COG0556 538 TIGRAARNV-NGKVILYADKITD 559 (663)
T ss_pred HHHHHhhcc-CCeEEEEchhhhH
Confidence 999999963 7999988665433
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-12 Score=125.49 Aligned_cols=175 Identities=19% Similarity=0.291 Sum_probs=121.2
Q ss_pred CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH------HHHHHHHHh-ccCCc
Q 011052 18 PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT------ILSDLITVY-AKGGK 90 (494)
Q Consensus 18 p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~------~L~~ll~~~-~~~~~ 90 (494)
.++--+|++|||.|+.+++-+.+- +-..+.+. ...+.-+-.+..+...-.+..++. .|...|+.. ..+.+
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~g--~~~~~klp-~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILKG--NLRILKLP-ARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred cccCceEEEecCChHHHHHHhhhC--CeeEeecc-hhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 456789999999998766544321 22223322 222222223334444444443331 344444433 45679
Q ss_pred EEEEcCChhhHHHHHHHHhcc---CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe-cCC-C
Q 011052 91 TIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-YEL-P 165 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~-~~~-P 165 (494)
++||+++.+..+++++.|++. ..+..+|+. ...|.+..++||+|++++||+|.+++||+.+|+|++.|. .+- -
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 999999999999999999754 346778887 567888999999999999999999999999999998664 332 3
Q ss_pred CChhhHHHHhcccCCCC--CCceEEEecChhhHH
Q 011052 166 NDPETFVHRSGRTGRAG--KEGTAILMFTSSQRR 197 (494)
Q Consensus 166 ~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e~~ 197 (494)
.+.+.++|.+||+||.- .+|..+.|-......
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 57899999999999964 468777775544433
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.5e-13 Score=146.07 Aligned_cols=167 Identities=20% Similarity=0.183 Sum_probs=128.2
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCcccHHHHHHHHHHH-hccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~ 99 (494)
.+.-||.|...+..++.+.|--+ ++. ++. +++.....+ -.+......|...+...+.. +..+.++||||+|++
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~--vv~-IPt--nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~ 441 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLD--VVV-IPT--NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIE 441 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCC--EEE-cCC--CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 45678888877777777666332 222 221 222111111 12223445677777666644 456789999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcc----------------------
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV---------------------- 156 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v---------------------- 156 (494)
.++.+++.|.+ ++++..||+. +.+|+..+.+|+.+...|+||||+|+||+||+==
T Consensus 442 ~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~ 519 (830)
T PRK12904 442 KSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKI 519 (830)
T ss_pred HHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHH
Confidence 99999999986 7999999996 8999999999999999999999999999999532
Q ss_pred ----------------cEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 157 ----------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 157 ----------------~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
-|||-...|.+..--.|-.||+||.|.+|.+..|++-.|
T Consensus 520 ~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 520 KAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 278888899999999999999999999999999887655
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=146.50 Aligned_cols=194 Identities=20% Similarity=0.332 Sum_probs=143.3
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC---------cccHHHHHHH
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT---------ATSKRTILSD 80 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~---------~~~k~~~L~~ 80 (494)
+..+++..+.+.|+|+.|||+.+. .++++.+.+....+.+. +...+...+++....+ ..++...+..
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~---~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~ 297 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVD---EDGSPRGLRYFVRREPPIRELAESIRRSALAELAT 297 (851)
T ss_pred HHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeecc---CCCCCCCceEEEEeCCcchhhhhhcccchHHHHHH
Confidence 344455556789999999999654 55677777766555432 2223334444444444 2245555555
Q ss_pred HHHHh-ccCCcEEEEcCChhhHHHHHHHHh----c-c----CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhcc
Q 011052 81 LITVY-AKGGKTIVFTQTKRDADEVSLALT----S-I----IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARG 150 (494)
Q Consensus 81 ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~----~-~----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~G 150 (494)
++... ..+-++|+|+.++..|+.++.... . . ..+..+|++|...+|.+++..|+.|+..++++|++++-|
T Consensus 298 ~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelg 377 (851)
T COG1205 298 LAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELG 377 (851)
T ss_pred HHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhc
Confidence 55443 456799999999999999973332 2 3 358889999999999999999999999999999999999
Q ss_pred CCCCcccEEEecCCCC-ChhhHHHHhcccCCCCCCceEEEecC--hhhHHHHHHHHHHhC
Q 011052 151 LDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFT--SSQRRTVRSLERDVG 207 (494)
Q Consensus 151 iDip~v~~VI~~~~P~-~~~~y~qr~GR~gR~G~~g~~i~l~~--~~e~~~l~~le~~~~ 207 (494)
|||.+++.||.+..|. +..+++||+||+||.++....++++. +.+..++..-+....
T Consensus 378 idiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 378 IDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred eeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 9999999999999999 89999999999999997777666654 334455555555544
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-13 Score=148.36 Aligned_cols=172 Identities=22% Similarity=0.237 Sum_probs=121.1
Q ss_pred CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccH--HHHHHHHHHHhccCCcEEEEcCC
Q 011052 20 KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK--RTILSDLITVYAKGGKTIVFTQT 97 (494)
Q Consensus 20 ~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k--~~~L~~ll~~~~~~~~~IVF~~t 97 (494)
+..+|+||||+|+..++....++.+...+........................+. .+....+.....++.+++|.|||
T Consensus 370 g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NT 449 (733)
T COG1203 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNT 449 (733)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEec
Confidence 6899999999999999988888766554432211000000000000101111111 13344455555677899999999
Q ss_pred hhhHHHHHHHHhccC-ceeeecCCCCHHHHHHHHccc----cCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHH
Q 011052 98 KRDADEVSLALTSII-ASEALHGDISQHQRERTLNGF----RQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172 (494)
Q Consensus 98 ~~~~~~l~~~L~~~~-~~~~lhg~~~~~~R~~~l~~F----r~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~ 172 (494)
+..|.++++.|+... +++.+|+.+...+|.+.++.+ +.....|+|||+|++.|+|+. .+++|-= +..+++++
T Consensus 450 V~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe--~aPidSLI 526 (733)
T COG1203 450 VDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITE--LAPIDSLI 526 (733)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeec--CCCHHHHH
Confidence 999999999999744 499999999999998888754 346788999999999999995 6666543 45688999
Q ss_pred HHhcccCCCC--CCceEEEecChh
Q 011052 173 HRSGRTGRAG--KEGTAILMFTSS 194 (494)
Q Consensus 173 qr~GR~gR~G--~~g~~i~l~~~~ 194 (494)
||+||++|.| ..+..+++....
T Consensus 527 QR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 527 QRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred HHHHHHhhcccccCCceeEeeccc
Confidence 9999999999 567777765543
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=142.90 Aligned_cols=115 Identities=30% Similarity=0.487 Sum_probs=97.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc---------------------------------------CceeeecCCCCHHHHHH
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI---------------------------------------IASEALHGDISQHQRER 128 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~---------------------------------------~~~~~lhg~~~~~~R~~ 128 (494)
+.++||||+++..|+.++..+.+. +.++++|.+++.++|+.
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 456999999999999988665311 13678999999999999
Q ss_pred HHccccCCCeeEEEechhhhccCCCCcccEEEec---C-CCCChhhHHHHhcccCCCC--CCceEEEecChhhHHHHHHH
Q 011052 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY---E-LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 129 ~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~---~-~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e~~~l~~l 202 (494)
+...|++|.+.|++||+.++.|+++|..+++|-. + .+.+.-+|.||+|||||+| ..|.+++++.+.+.+.+..+
T Consensus 540 iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred HHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 9999999999999999999999999999998853 2 2357889999999999998 56999999999997766554
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=144.69 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=126.0
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH-HHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL-SDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L-~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
.+--||.|...+..++.+.|--+ ++. ++............. +......|...+ ..+...+..+.++||||+|++.
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~--Vv~-IPtnkp~~R~d~~d~-v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~ 456 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLE--VVV-IPTNRSMIRKDEADL-VYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEA 456 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCC--EEE-CCCCCCcceecCCCe-EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 45567888877767776666322 222 222221111112212 223344565544 4555666778899999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC-------------------------
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip------------------------- 154 (494)
++.++..|.+ ++++.+||+.+.+.+++.+.++|+.|. |+||||+|+||+||.
T Consensus 457 sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~ 534 (896)
T PRK13104 457 SEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVK 534 (896)
T ss_pred HHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHH
Confidence 9999999986 899999999999999999999999995 999999999999984
Q ss_pred --------cc-----cEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 155 --------NV-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 155 --------~v-----~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
.| -|||-...+.+..---|-.||+||.|.+|.+.+|++-.|
T Consensus 535 ~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 535 KEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 11 178888888888888999999999999999999887655
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=144.38 Aligned_cols=187 Identities=18% Similarity=0.288 Sum_probs=142.3
Q ss_pred HHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCc
Q 011052 11 ELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGK 90 (494)
Q Consensus 11 ~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 90 (494)
++-++.+..+.-++-+|||.=+....++-.-+++-..|...+. .. -.|+.+. .+. +..-+=..++.++..+++
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~--~R--~pV~T~V--~~~-d~~~ireAI~REl~RgGQ 805 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPE--DR--LPVKTFV--SEY-DDLLIREAILRELLRGGQ 805 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCC--CC--cceEEEE--ecC-ChHHHHHHHHHHHhcCCE
Confidence 4556667778899999999766666666666677666654321 11 1122222 222 222223445566678899
Q ss_pred EEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCC-C
Q 011052 91 TIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP-N 166 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P-~ 166 (494)
+-..+|..+..+++++.|+. ..++.+.||.|+..+-++++..|-+|+++|||||.+.+.|||||+++.+|..+.- -
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKF 885 (1139)
T ss_pred EEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccc
Confidence 99999999999999999986 3568999999999999999999999999999999999999999999987754432 3
Q ss_pred ChhhHHHHhcccCCCCCCceEEEecChh------hHHHHHHHHH
Q 011052 167 DPETFVHRSGRTGRAGKEGTAILMFTSS------QRRTVRSLER 204 (494)
Q Consensus 167 ~~~~y~qr~GR~gR~G~~g~~i~l~~~~------e~~~l~~le~ 204 (494)
-.+++.|-.||+||..+.+.||++|.+. -.+.++.|+.
T Consensus 886 GLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 886 GLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred cHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 5789999999999999999999998753 3456666655
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=141.37 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=126.2
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
.+.-||.|...+..++.+.|--+ ++.+ +...........-..+. ....|.. ++..+...+..+.++||||+|++.
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~--Vv~I-PTnkp~~R~d~~d~iy~-t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~ 461 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLD--TVVV-PTNRPMVRKDMADLVYL-TADEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCC--EEEC-CCCCCccceeCCCcEEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHH
Confidence 45567888776666666666332 2222 11111111112212222 2334544 455566666778899999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC-------------------------
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip------------------------- 154 (494)
++.++..|.+ ++++.+||+++++.+++.+.+.|+.|. |+|||++|+||+||.
T Consensus 462 se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~ 539 (908)
T PRK13107 462 SELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKA 539 (908)
T ss_pred HHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHH
Confidence 9999999986 899999999999999999999999998 999999999999984
Q ss_pred -------cc-----cEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhH
Q 011052 155 -------NV-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 155 -------~v-----~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
.| -|||-...+.+..---|-.||+||.|.+|.+.+|++-.|.
T Consensus 540 ~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 540 DWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12 2788888899998899999999999999999998876653
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=133.77 Aligned_cols=106 Identities=28% Similarity=0.416 Sum_probs=89.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-cC---------------------------------------ceeeecCCCCHHHHHH
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-II---------------------------------------ASEALHGDISQHQRER 128 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-~~---------------------------------------~~~~lhg~~~~~~R~~ 128 (494)
-++||||-+++.|++.++.|.. .+ .++++||++-+--++-
T Consensus 568 LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~ 647 (1248)
T KOG0947|consen 568 LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEV 647 (1248)
T ss_pred CceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHH
Confidence 4899999999999999999852 10 3678999999999999
Q ss_pred HHccccCCCeeEEEechhhhccCCCCcccEEEec----C----CCCChhhHHHHhcccCCCC--CCceEEEecChh
Q 011052 129 TLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY----E----LPNDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (494)
Q Consensus 129 ~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~----~----~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~ 194 (494)
+..-|..|-++||+||..++.|+|+|.-.+|+.- | ---.+-.|.||+|||||.| .+|++++++...
T Consensus 648 VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 648 VELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9999999999999999999999999998888731 1 1135778999999999988 679998887654
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=128.58 Aligned_cols=255 Identities=16% Similarity=0.223 Sum_probs=160.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhcc-CCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~G-iDip~v 156 (494)
...+||.+|||+.|.++...+.. .+.+.+++|+.+...|.+.+++ .++|+|||+ .+..| +|+..|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 45799999999999999988764 3569999999999999999988 899999997 55555 788899
Q ss_pred cEEE--------ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH-hCCCceecCCCCHHHHH-----
Q 011052 157 DLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD-VGCKFEFVSPPVVEDVL----- 222 (494)
Q Consensus 157 ~~VI--------~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~-~~~~~~~~~~p~~~~i~----- 222 (494)
+|+| +.++-.+++.+++.+.++-| -.++++..-...++.|... ++ ....+.+-...+..
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r------Qtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i 313 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR------QTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNI 313 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc------cEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcch
Confidence 9988 45566778888999988776 2333333333334444332 33 22222111111111
Q ss_pred ------------HHHHHHHHHHHccCCccchhhhhHH---HHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCce
Q 011052 223 ------------ESSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWV 287 (494)
Q Consensus 223 ------------~~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~ 287 (494)
...+..++....+..+..+..|-++ ++++...+....+-+...|.. .+|..+...|...++|..
T Consensus 314 ~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd-~sQ~eR~~~L~~FreG~~ 392 (519)
T KOG0331|consen 314 RQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGD-KSQSERDWVLKGFREGKS 392 (519)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeeccc-ccHHHHHHHHHhcccCCc
Confidence 1111222222221122222223222 222222111111112222221 233334445667889999
Q ss_pred EEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEec-CHHHHHHHHhhcCCCC
Q 011052 288 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL-PEEIAKELLNKQIPPG 356 (494)
Q Consensus 288 t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~-~~~~~~~~~~~~~~~~ 356 (494)
-++|++|. |++++|.++|..+|+++.|...+| ||+++++...+.+.+||.. +...+.++++.+.+.+
T Consensus 393 ~vLVATdV--AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~ 464 (519)
T KOG0331|consen 393 PVLVATDV--AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAG 464 (519)
T ss_pred ceEEEccc--ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHcc
Confidence 99999999 899999999999999999988887 8888887777777888877 4556666666655544
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=131.20 Aligned_cols=117 Identities=23% Similarity=0.387 Sum_probs=89.2
Q ss_pred eeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCC--------C----------ChhhHHHHh
Q 011052 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP--------N----------DPETFVHRS 175 (494)
Q Consensus 114 ~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P--------~----------~~~~y~qr~ 175 (494)
|.+|++=++...+.++++.--.|..-++|||+||+..|.||+|.+||+++.- . +..+--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 4556778899999999999999998999999999999999999999976643 2 334447999
Q ss_pred cccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHHHHHHHHHHHHHHHccCCccchhhh
Q 011052 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFF 244 (494)
Q Consensus 176 GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f 244 (494)
|||||.| .|+||-+|+..-.. ..|+.. +..+|++.-.+.++..+++.+...+..|
T Consensus 687 GRAGRtg-pGHcYRLYSSAVf~----------~~Fe~f---S~PEIlk~Pve~lvLqMKsMnI~kVvnF 741 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSSAVFS----------NDFEEF---SLPEILKKPVESLVLQMKSMNIDKVVNF 741 (1172)
T ss_pred cccCCCC-CCceeehhhhHHhh----------cchhhh---ccHHHhhCcHHHHHHHHHhcCccceecC
Confidence 9999998 99999999864321 112222 3456777777778888887766655544
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-10 Score=119.10 Aligned_cols=224 Identities=18% Similarity=0.215 Sum_probs=151.2
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc---cc------HHHHHHHHH-HHhccC
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA---TS------KRTILSDLI-TVYAKG 88 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~---~~------k~~~L~~ll-~~~~~~ 88 (494)
.+.|++-.|||+...++-....+ +-..++++... -.+..-+++.++.++ .+ +..-..+++ +....+
T Consensus 450 ~~~~~~~~~~~~K~~~~~~~~~~--~~~E~~Li~~D--GSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~ 525 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLRSELA--NLSELELVTID--GSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHG 525 (1034)
T ss_pred cCcceEeCCCCcCCHHHHHHHhc--CCcceEEEEec--CCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcC
Confidence 47899999999977765544333 22333333221 123344555555443 11 221222222 223456
Q ss_pred CcEEEEcCChhhHHHHHHHHhccC---------ceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 89 GKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~~---------~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
-++|-||+.++.|+.+....++-+ .+..+.|+....+|.++...+-.|+..-+|||++++.||||..++.|
T Consensus 526 ~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAV 605 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAV 605 (1034)
T ss_pred CcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeE
Confidence 799999999999998766655311 24567899999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEe--cChhhHHHHHHHHHHhCCC-ceecCCCCHHHHHHHHHHHHHHHHccC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILM--FTSSQRRTVRSLERDVGCK-FEFVSPPVVEDVLESSAEQVVATLNGV 236 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l--~~~~e~~~l~~le~~~~~~-~~~~~~p~~~~i~~~~~~~~~~~l~~~ 236 (494)
+++++|.+...+.|..||+||..++..++++ ..|-|..++..-+...+.+ ++.....+..-+++.++.-....|.-.
T Consensus 606 l~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~~iL~~HlQCAA~ELPIN 685 (1034)
T KOG4150|consen 606 LHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNKHVLMQHLQCAALELPIN 685 (1034)
T ss_pred EEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccHHHHHHHHhHHhhcCccc
Confidence 9999999999999999999999988776654 4566777776666655443 333333445566666665555444433
Q ss_pred CccchhhhhH
Q 011052 237 HPESVEFFTP 246 (494)
Q Consensus 237 ~~~~~~~f~~ 246 (494)
-..+.++|.+
T Consensus 686 ~~~D~q~Fg~ 695 (1034)
T KOG4150|consen 686 LQYDQQHFGS 695 (1034)
T ss_pred cchhhhhccc
Confidence 3333444543
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-12 Score=130.95 Aligned_cols=245 Identities=18% Similarity=0.223 Sum_probs=180.3
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------------------
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------------------ 145 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------------------ 145 (494)
..+||++||++.|+++++.-++ .+.+...+|+.+...+.+-+++ .++|||||+
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~----gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKR----GCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhcc----CccEEEecCchhhhhhhcceeehhhCc
Confidence 5789999999999999999875 3678888999776666655555 899999998
Q ss_pred -----hhhccCC----CCcccEEEecC-CCC---------------Ch---------hhH-HHHhcccCCCC-CCceEEE
Q 011052 146 -----VAARGLD----IPNVDLIIHYE-LPN---------------DP---------ETF-VHRSGRTGRAG-KEGTAIL 189 (494)
Q Consensus 146 -----~~~~GiD----ip~v~~VI~~~-~P~---------------~~---------~~y-~qr~GR~gR~G-~~g~~i~ 189 (494)
.|.+.|| .|+++++|.+. +|. ++ +.| .+++||.|+.- ..-.+++
T Consensus 229 ~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~ 308 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKIL 308 (482)
T ss_pred EEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEee
Confidence 5667777 26777666433 321 11 111 35667777753 4456777
Q ss_pred ecChhhHH-HHHHHHHHhC-----------CCceecCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCH
Q 011052 190 MFTSSQRR-TVRSLERDVG-----------CKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGT 257 (494)
Q Consensus 190 l~~~~e~~-~l~~le~~~~-----------~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~ 257 (494)
++...+++ .+-.+..... ..+.+++.+...+.+...+...-...+++|.+..+..++.+..++.....
T Consensus 309 ~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~ 388 (482)
T KOG0335|consen 309 FVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKA 388 (482)
T ss_pred eecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCc
Confidence 77766544 3333322111 34567888888888888888888888899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeE
Q 011052 258 DALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAV 337 (494)
Q Consensus 258 ~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~ 337 (494)
..++|+.+...|++.+ .|++++++|. |.++..++|+.+++.+ .|+.+++ -+|
T Consensus 389 pvlVaT~VaaRGlDi~------------~V~hVInyDm--------P~d~d~YvHRIGRTGR--~Gn~G~a------tsf 440 (482)
T KOG0335|consen 389 PVLVATNVAARGLDIP------------NVKHVINYDM--------PADIDDYVHRIGRTGR--VGNGGRA------TSF 440 (482)
T ss_pred ceEEEehhhhcCCCCC------------CCceeEEeec--------CcchhhHHHhcccccc--CCCCcee------EEE
Confidence 9999999999999988 8999999998 8999999999666555 5555544 456
Q ss_pred Ee-cCHHHHHHHHhhcCCCCCceEeeccCCCcCCC
Q 011052 338 FD-LPEEIAKELLNKQIPPGNTISKITKLPALQDD 371 (494)
Q Consensus 338 ~d-~~~~~~~~~~~~~~~~~~~l~v~~~LP~~~~~ 371 (494)
|+ ...++++.+.+...+.+ ++.|.+..+
T Consensus 441 ~n~~~~~i~~~L~~~l~ea~------q~vP~wl~~ 469 (482)
T KOG0335|consen 441 FNEKNQNIAKALVEILTEAN------QEVPQWLSE 469 (482)
T ss_pred eccccchhHHHHHHHHHHhc------ccCcHHHHh
Confidence 66 67788888888777655 345555544
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=125.81 Aligned_cols=175 Identities=19% Similarity=0.337 Sum_probs=118.8
Q ss_pred CCCCcEEEEeecCChHHHHHHHHHcC-CCc-EEEeccccccccccceEEEEEEcCcc---cHHH-----HHHHHHHHhcc
Q 011052 18 PPKRQSMLFSATMPSWVKKLSRKYLD-NPL-NIDLVGNQDEKLAEGIKLYAISTTAT---SKRT-----ILSDLITVYAK 87 (494)
Q Consensus 18 p~~~q~ll~SATlp~~i~~l~~~~l~-~p~-~i~~~~~~~~~~~~~i~~~~~~~~~~---~k~~-----~L~~ll~~~~~ 87 (494)
....+++.+|||+|+- .+++. ||+ +|. -+-.-...-. +-.+.+.++-.+.. .+.+ ....+++.+..
T Consensus 273 qs~IRivgLSATlPN~-eDvA~-fL~vn~~~glfsFd~~yR--PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~ 348 (1230)
T KOG0952|consen 273 QSMIRIVGLSATLPNY-EDVAR-FLRVNPYAGLFSFDQRYR--PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE 348 (1230)
T ss_pred hhheEEEEeeccCCCH-HHHHH-HhcCCCccceeeeccccc--ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc
Confidence 3567899999999974 45554 555 322 1111111111 12233333322222 1111 22345555667
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----c-------------------CceeeecCCCCHHHHHHHHccccCCCeeEEEe
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----I-------------------IASEALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~-------------------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVa 143 (494)
+.+++|||.++..+...|+.|.+ + .....+|++|.-.+|..+.+.|..|.++||+|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 88999999999999998888852 1 12457899999999999999999999999999
Q ss_pred chhhhccCCCCcccEEE----ecCCCC------ChhhHHHHhcccCCCC--CCceEEEecChhhH
Q 011052 144 TDVAARGLDIPNVDLII----HYELPN------DPETFVHRSGRTGRAG--KEGTAILMFTSSQR 196 (494)
Q Consensus 144 T~~~~~GiDip~v~~VI----~~~~P~------~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e~ 196 (494)
|..++.|+|+|+--+|| -||.-. ..-+.+|..|||||.. ..|.++++.+....
T Consensus 429 TaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred cceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 99999999999865555 244332 4566799999999976 67888887665443
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=128.99 Aligned_cols=175 Identities=21% Similarity=0.331 Sum_probs=121.5
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcC-CCcEEEeccccccccccceEEEEEEcCcc--cH-HH-----HHHHHHHHhccCC
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLD-NPLNIDLVGNQDEKLAEGIKLYAISTTAT--SK-RT-----ILSDLITVYAKGG 89 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~-~p~~i~~~~~~~~~~~~~i~~~~~~~~~~--~k-~~-----~L~~ll~~~~~~~ 89 (494)
..++++-+|||+|+-. +.+ .|+. ++.-+-.-+..-. +..+++.++-+... .| .+ ...++++... ..
T Consensus 473 e~~RlVGLSATLPNy~-DV~-~Fl~v~~~glf~fd~syR--pvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~ag-k~ 547 (1674)
T KOG0951|consen 473 EGSRLVGLSATLPNYE-DVA-SFLRVDPEGLFYFDSSYR--PVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAG-KN 547 (1674)
T ss_pred cCceeeeecccCCchh-hhH-HHhccCcccccccCcccC--cCCccceEeccccCCchHHHHHHHHHHHHHHHHhCC-CC
Confidence 4789999999999753 222 2433 3322212111112 22344555544332 22 22 2334444443 38
Q ss_pred cEEEEcCChhhHHHHHHHHhcc--------------------------------------CceeeecCCCCHHHHHHHHc
Q 011052 90 KTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRERTLN 131 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~~--------------------------------------~~~~~lhg~~~~~~R~~~l~ 131 (494)
++|||+.+|+++.+.|..++.. +..+.+|+||+..+|..+.+
T Consensus 548 qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 548 QVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred cEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 9999999999888888777510 14677999999999999999
Q ss_pred cccCCCeeEEEechhhhccCCCCcccEEE----ecCC------CCChhhHHHHhcccCCCC--CCceEEEecChhhHHH
Q 011052 132 GFRQGKFTVLVATDVAARGLDIPNVDLII----HYEL------PNDPETFVHRSGRTGRAG--KEGTAILMFTSSQRRT 198 (494)
Q Consensus 132 ~Fr~g~~~iLVaT~~~~~GiDip~v~~VI----~~~~------P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e~~~ 198 (494)
.|++|.++|||+|-.+++|+|+|.-+++| -|++ +.++.+.+||.||+||.+ ..|..++.....|..+
T Consensus 628 Lf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 628 LFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred HHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhh
Confidence 99999999999999999999999998888 3654 457889999999999987 4566777666655443
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.2e-11 Score=134.74 Aligned_cols=134 Identities=18% Similarity=0.362 Sum_probs=110.7
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCC---CeeEEEechh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG---KFTVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g---~~~iLVaT~~ 146 (494)
..|+.+|..+|..+ ..+.++||||......+.|.+.|.. ++.++.+||+++..+|..+++.|.+. ...+|++|.+
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 46778888887665 3467999999999999999999874 78999999999999999999999753 3568999999
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE--ecCh--hhHHHHHHHHHH
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTS--SQRRTVRSLERD 205 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~--l~~~--~e~~~l~~le~~ 205 (494)
++.|||+..+++||+||+||++..+.|++||+.|.|++..+.+ |++. -|.+.+....+.
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~K 612 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKK 612 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997766554 3433 244444444333
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-10 Score=121.47 Aligned_cols=247 Identities=17% Similarity=0.232 Sum_probs=122.9
Q ss_pred cEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCcccE
Q 011052 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v~~ 158 (494)
++||.|||++.|.++++.+.. .+.+..++|+.+...+...+. +..+|||||+ .....+++.++++
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 699999999999999988874 356788899998877655543 3789999997 2344567888888
Q ss_pred EEec--CC--CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH-hCCCcee-cC-CCC-HHHH-------HH
Q 011052 159 IIHY--EL--PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD-VGCKFEF-VS-PPV-VEDV-------LE 223 (494)
Q Consensus 159 VI~~--~~--P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~-~~~~~~~-~~-~p~-~~~i-------~~ 223 (494)
||.= |. -......+.++= .... ....+++++.+-...+..+... +...... +. ... .+.+ ..
T Consensus 153 lViDEah~ll~~~~~~~i~~il--~~l~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~ 229 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVL--AKLP-AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK 229 (456)
T ss_pred EEeecHHHHhccccHHHHHHHH--HhCC-ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH
Confidence 7732 21 111111111110 0111 1122333333222223333322 2222111 00 000 0000 00
Q ss_pred HHHHHHHHHHc-cCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCC---------CCCCCCcccccCCCCceEEEEec
Q 011052 224 SSAEQVVATLN-GVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF---------SRPPSSRSLINHEQGWVTLQLTR 293 (494)
Q Consensus 224 ~~~~~~~~~l~-~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~---------~~~~~~rsl~~~~~~~~t~~~~~ 293 (494)
.....++..+. ......+-.|.... ...+.++..|.+ .++ ++..+.+.+...+.+.+.++|++
T Consensus 230 ~~k~~~l~~l~~~~~~~~~lVF~~t~------~~~~~l~~~L~~-~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 302 (456)
T PRK10590 230 KRKRELLSQMIGKGNWQQVLVFTRTK------HGANHLAEQLNK-DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 302 (456)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEcCcH------HHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 01111111111 11111111221110 011223333322 111 11112223344567788899999
Q ss_pred CCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecCHHHHHHHHhhc
Q 011052 294 DSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNKQ 352 (494)
Q Consensus 294 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~ 352 (494)
+. ...++|.++|..+|+...|...++ +|+..+....+.+-+++...+....+.+++.
T Consensus 303 dv--~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 303 DI--AARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred cH--HhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 87 678899999998888887765544 6777776665544466666554444444443
|
|
| >PF08152 GUCT: GUCT (NUC152) domain; InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-11 Score=102.35 Aligned_cols=95 Identities=38% Similarity=0.563 Sum_probs=51.3
Q ss_pred CCCCCCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCc-CccccccEEEeecCCcceeEEecCHHHHHH
Q 011052 269 GFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPT-AADEIGKIHIIADDRVQGAVFDLPEEIAKE 347 (494)
Q Consensus 269 g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~ 347 (494)
|+.+ ++.|||+++.+|++|+.+....++ -++..++..|.+..+. ..+.|++|.+.++. +|++||||++.+++
T Consensus 1 G~t~-~~~RSLLt~~~g~vTl~l~~~~~i----~~~~y~~~~L~~~L~e~~~~~v~~m~l~~d~--~GavFDvP~~~~~~ 73 (97)
T PF08152_consen 1 GYTE-IKQRSLLTSEEGFVTLQLTCSREI----RSPGYAWRILRRQLSEEIADKVKGMTLLKDK--MGAVFDVPSEIAEE 73 (97)
T ss_dssp S-S--------------EEEEEEE-SS------SSTHHHHHHHHHHS-HHHHTT-EEEEE-TTS--SEEEEEEEHHHHHH
T ss_pred CCCC-CCccccccCCCCCEEEEEEcCCcC----CCchhHHHHHHHhcCHHHHHhhCcEEEecCC--CEEEEEChHHHHHH
Confidence 4556 788999999999999999887643 3466777777766553 55679999999886 79999999999999
Q ss_pred HHhhcCCC-CCceEeeccCCCcCC
Q 011052 348 LLNKQIPP-GNTISKITKLPALQD 370 (494)
Q Consensus 348 ~~~~~~~~-~~~l~v~~~LP~~~~ 370 (494)
+++.+.+. +++++++++||+|++
T Consensus 74 ~~~~~~~~~~~~l~v~~~LPeL~e 97 (97)
T PF08152_consen 74 FLAKWEDSRGWQLSVATELPELQE 97 (97)
T ss_dssp HHHH--SS-S-EEE----------
T ss_pred HHHhCcccCCcEEEEcccCcCccC
Confidence 99998885 999999999999874
|
; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A. |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-10 Score=123.07 Aligned_cols=102 Identities=32% Similarity=0.532 Sum_probs=92.0
Q ss_pred HHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcc
Q 011052 78 LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 78 L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v 156 (494)
+..++..+..+.+++|||..++.++.++..+.. .+ +..+.+..++.+|..++++|+.+.+++||++.++..|+|+|++
T Consensus 273 ~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~ 351 (442)
T COG1061 273 VRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDA 351 (442)
T ss_pred HHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCC
Confidence 333443332457999999999999999999985 45 8899999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCChhhHHHHhcccCC
Q 011052 157 DLIIHYELPNDPETFVHRSGRTGR 180 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR 180 (494)
+++|......+...|+||+||.-|
T Consensus 352 ~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 352 DVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred cEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=124.05 Aligned_cols=107 Identities=24% Similarity=0.419 Sum_probs=88.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-C---------------------------------------ceeeecCCCCHHHHH
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-I---------------------------------------ASEALHGDISQHQRE 127 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-~---------------------------------------~~~~lhg~~~~~~R~ 127 (494)
..++|||+-++++|+.+|..+.+- + .+.++|+|+-+--++
T Consensus 383 ~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE 462 (1041)
T KOG0948|consen 383 YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKE 462 (1041)
T ss_pred CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHH
Confidence 358999999999999998887531 1 255789999999999
Q ss_pred HHHccccCCCeeEEEechhhhccCCCCcccEEEe----cCC---C-CChhhHHHHhcccCCCC--CCceEEEecChh
Q 011052 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YEL---P-NDPETFVHRSGRTGRAG--KEGTAILMFTSS 194 (494)
Q Consensus 128 ~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~~---P-~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~ 194 (494)
.+.--|..|-+++|.||..++.|+|+|.-++|.- ||- - .+.-.|+|++|||||.| ..|.||++++..
T Consensus 463 ~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 463 VIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred HHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 9999999999999999999999999999887772 331 1 25667999999999998 558899988653
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-09 Score=109.36 Aligned_cols=257 Identities=15% Similarity=0.184 Sum_probs=147.3
Q ss_pred cEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCcccE
Q 011052 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVDL 158 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v~~ 158 (494)
-.||.|||++.|.+|+...++ ++.++++||+++..++...|+. .+.|+|||+ |--.++|+..|++
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~----g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKE----GAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhc----CCeEEEechHHHHHHHHhhcccceeeeE
Confidence 457889999999999877664 4789999999999999999985 889999998 5556788888887
Q ss_pred EEe--------cCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC----------------
Q 011052 159 IIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS---------------- 214 (494)
Q Consensus 159 VI~--------~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~---------------- 214 (494)
+|. .++-..+.++.|.+ | ..-.|++|-.....+..+.....+...+..+.
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hi----r--pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V 447 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHI----R--PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSV 447 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhc----C--CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeee
Confidence 662 22333455555554 1 13345555444443333333334443333221
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcC---------CCCCCCCcccccCCCC
Q 011052 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG---------FSRPPSSRSLINHEQG 285 (494)
Q Consensus 215 ~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g---------~~~~~~~rsl~~~~~~ 285 (494)
.|+.+.-+...+..+...+ ....+-.|.. ++.+.+.+++.| .+.+ .+|..++..|...+..
T Consensus 448 ~~s~~~Kl~wl~~~L~~f~---S~gkvlifVT------Kk~~~e~i~a~L-klk~~~v~llhgdkdqa~rn~~ls~fKkk 517 (731)
T KOG0339|consen 448 CPSEEKKLNWLLRHLVEFS---SEGKVLIFVT------KKADAEEIAANL-KLKGFNVSLLHGDKDQAERNEVLSKFKKK 517 (731)
T ss_pred ccCcHHHHHHHHHHhhhhc---cCCcEEEEEe------ccCCHHHHHHHh-ccccceeeeecCchhhHHHHHHHHHHhhc
Confidence 1222222222222221111 1111111110 111223333322 2222 2233334445556666
Q ss_pred ceEEEEecCCccccCccchhHHHHHhhhhcCcC----ccccccEEEeecCCcceeEE-ecCHHHHHHHHhhcCCCCCceE
Q 011052 286 WVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA----ADEIGKIHIIADDRVQGAVF-DLPEEIAKELLNKQIPPGNTIS 360 (494)
Q Consensus 286 ~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~----~~~ig~i~~~~~~~~~gs~~-d~~~~~~~~~~~~~~~~~~~l~ 360 (494)
..-+++++|. +++++++.+|..+|+.+.-.. ..-||+++++...+++=+++ +-..+.|-.|++.+...+. .
T Consensus 518 ~~~VlvatDv--aargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQ--n 593 (731)
T KOG0339|consen 518 RKPVLVATDV--AARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQ--N 593 (731)
T ss_pred CCceEEEeeH--hhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccc--c
Confidence 6778888888 688888888888887654211 12288998888876554444 4466677888877665554 3
Q ss_pred eeccCCCcCC
Q 011052 361 KITKLPALQD 370 (494)
Q Consensus 361 v~~~LP~~~~ 370 (494)
|+.+|-.|..
T Consensus 594 VP~~l~dlam 603 (731)
T KOG0339|consen 594 VPDELMDLAM 603 (731)
T ss_pred CChHHHHHHh
Confidence 4555555444
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=125.63 Aligned_cols=93 Identities=23% Similarity=0.429 Sum_probs=81.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-------C---ceeeecCCCCHHHHHHHHccccCCCe-eEEEechhhhccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-------I---ASEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-------~---~~~~lhg~~~~~~R~~~l~~Fr~g~~-~iLVaT~~~~~GiDip~v 156 (494)
++|+||||.+++.|+.+++.|.+. + .+..+||+++ ++.+++++|+++.. +|+|+++++.+|+|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 379999999999999999887642 1 3567899876 46779999999876 699999999999999999
Q ss_pred cEEEecCCCCChhhHHHHhcccCCCC
Q 011052 157 DLIIHYELPNDPETFVHRSGRTGRAG 182 (494)
Q Consensus 157 ~~VI~~~~P~~~~~y~qr~GR~gR~G 182 (494)
.+||.+.++.+...|+||+||+.|.-
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhhccCC
Confidence 99999999999999999999999953
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-08 Score=113.65 Aligned_cols=104 Identities=25% Similarity=0.422 Sum_probs=86.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhc----------c-------------------C-------------ceeeecCCCCHHHH
Q 011052 89 GKTIVFTQTKRDADEVSLALTS----------I-------------------I-------------ASEALHGDISQHQR 126 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~----------~-------------------~-------------~~~~lhg~~~~~~R 126 (494)
-++|+||-++..|+..+..+.. . + .+.++|++|-+..+
T Consensus 380 lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K 459 (1041)
T COG4581 380 LPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIK 459 (1041)
T ss_pred CceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHH
Confidence 4899999999999988776641 1 1 13468999999999
Q ss_pred HHHHccccCCCeeEEEechhhhccCCCCcccEEE----ecC----CCCChhhHHHHhcccCCCC--CCceEEEecC
Q 011052 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----HYE----LPNDPETFVHRSGRTGRAG--KEGTAILMFT 192 (494)
Q Consensus 127 ~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI----~~~----~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~ 192 (494)
..+.+.|..|-++||+||.+++.|+|+|.-++|+ .+| -+-++..|+|++||+||.| ..|.+|++-.
T Consensus 460 ~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 460 ELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred HHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 9999999999999999999999999999888776 222 3457899999999999998 5688888733
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-08 Score=108.18 Aligned_cols=167 Identities=20% Similarity=0.192 Sum_probs=114.6
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~ 99 (494)
.+.-||.|.-.+-.++.+.|--+ ++. ++ .+++.....+- .+......|.. ++..+...+.++.++||.|.|.+
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~l~--Vv~-IP--TnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYNMR--VNV-VP--TNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC--EEE-CC--CCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 45567788766666666655322 222 22 22221111111 12223334544 44556666677889999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---ccc-----EEEecCCCCChhh
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPET 170 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---~v~-----~VI~~~~P~~~~~ 170 (494)
.++.++..|.+ ++++.+|++. +.+++..+-.=.-..-.|.|||++|+||.||. .|. |||....|.+..-
T Consensus 438 ~SE~ls~~L~~~gi~h~vLNAk--~~e~EA~IIa~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRI 515 (925)
T PRK12903 438 DSETLHELLLEANIPHTVLNAK--QNAREAEIIAKAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRI 515 (925)
T ss_pred HHHHHHHHHHHCCCCceeeccc--chhhHHHHHHhCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHH
Confidence 99999999986 7888899886 34444433331122456999999999999994 232 8999999999988
Q ss_pred HHHHhcccCCCCCCceEEEecChhh
Q 011052 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 171 y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
--|-.||+||.|.+|.+.+|++-.|
T Consensus 516 DnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 516 DNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred HHHHhcccccCCCCCcceEEEecch
Confidence 8999999999999999988887655
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-07 Score=99.58 Aligned_cols=105 Identities=17% Similarity=0.324 Sum_probs=86.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc--------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
.+.++||.+--...-.|...|.. .+.+..+|+.++..++.++.+....+..++++.|.+++..+.+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 46889999999988888877752 3678899999999999999999999999999999999999999998888
Q ss_pred EecCCC------------------CChhhHHHHhcccCCCCCCceEEEecCh
Q 011052 160 IHYELP------------------NDPETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 160 I~~~~P------------------~~~~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
|+.+.- .+.-..+||.||+||. ++|.|..++..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 854421 2455669999999997 47888877653
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-08 Score=108.68 Aligned_cols=168 Identities=18% Similarity=0.186 Sum_probs=117.6
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
.+.-||.|...+..++.+.|--+ ++. ++...+....+.....+. ....|.. ++..+...+..+.++||.|.+.+.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~--Vv~-IPtnkp~~R~d~~d~iy~-t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~ 439 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG--VSV-IPPNKPNIREDEADRVYA-TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAE 439 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc--EEE-CCCCCCceeecCCCceEe-CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHH
Confidence 46788999877777777666433 222 222222211222222222 2334544 445566666788999999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC----------ccc-----EEEecCC
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP----------NVD-----LIIHYEL 164 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip----------~v~-----~VI~~~~ 164 (494)
.+.++..|.+ ++++.+|++.-...+-+.+-+.=+ .-.|.|||++|.||.||. .|. |||-...
T Consensus 440 SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~--~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTer 517 (764)
T PRK12326 440 SEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGK--YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGR 517 (764)
T ss_pred HHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCC--CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccC
Confidence 9999999986 789999988733333222223322 345999999999999984 232 8999999
Q ss_pred CCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 165 P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
|.+..--.|-.||+||.|.+|.+.+|++-.|
T Consensus 518 heSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 518 HRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999999999999999999887665
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.7e-09 Score=106.93 Aligned_cols=157 Identities=19% Similarity=0.285 Sum_probs=104.1
Q ss_pred cCCCcEEEeccccccccccceEEEEE-EcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc--cCceeeec
Q 011052 42 LDNPLNIDLVGNQDEKLAEGIKLYAI-STTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALH 118 (494)
Q Consensus 42 l~~p~~i~~~~~~~~~~~~~i~~~~~-~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lh 118 (494)
+.+|.+++++..--..+-+.++.+.+ ...+-...+.+..-++.+. ++.|||-. +++..-.+...+.+ ..++++++
T Consensus 311 CGepsvldlV~~i~k~TGd~vev~~YeRl~pL~v~~~~~~sl~nlk-~GDCvV~F-Skk~I~~~k~kIE~~g~~k~aVIY 388 (700)
T KOG0953|consen 311 CGEPSVLDLVRKILKMTGDDVEVREYERLSPLVVEETALGSLSNLK-PGDCVVAF-SKKDIFTVKKKIEKAGNHKCAVIY 388 (700)
T ss_pred cCCchHHHHHHHHHhhcCCeeEEEeecccCcceehhhhhhhhccCC-CCCeEEEe-ehhhHHHHHHHHHHhcCcceEEEe
Confidence 34566666654333334444444332 2222222233333344443 45555544 56667777777775 35699999
Q ss_pred CCCCHHHHHHHHccccC--CCeeEEEechhhhccCCCCcccEEEecCC---------CCChhhHHHHhcccCCCC---CC
Q 011052 119 GDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLIIHYEL---------PNDPETFVHRSGRTGRAG---KE 184 (494)
Q Consensus 119 g~~~~~~R~~~l~~Fr~--g~~~iLVaT~~~~~GiDip~v~~VI~~~~---------P~~~~~y~qr~GR~gR~G---~~ 184 (494)
|.+|++.|.+.-..|.+ ++++||||||++.+|+|+ +|+-||.|++ |-+..+..|-+|||||.| ..
T Consensus 389 GsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~ 467 (700)
T KOG0953|consen 389 GSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQ 467 (700)
T ss_pred cCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcC
Confidence 99999999999999987 899999999999999999 6788887764 456788899999999987 34
Q ss_pred ceEEEecChhhHHHHHHH
Q 011052 185 GTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 185 g~~i~l~~~~e~~~l~~l 202 (494)
|.+.+|.. +|...++.+
T Consensus 468 G~vTtl~~-eDL~~L~~~ 484 (700)
T KOG0953|consen 468 GEVTTLHS-EDLKLLKRI 484 (700)
T ss_pred ceEEEeeH-hhHHHHHHH
Confidence 66665543 333333333
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-09 Score=114.27 Aligned_cols=237 Identities=16% Similarity=0.222 Sum_probs=141.0
Q ss_pred EEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhcc-CCCCcccE
Q 011052 91 TIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVDL 158 (494)
Q Consensus 91 ~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~G-iDip~v~~ 158 (494)
+||++||++.|.++++.+.. .+.++.++|+++...+...++. + .+|||||| .+.++ +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999999873 3568999999999988877776 4 99999998 56666 88999998
Q ss_pred EEe--------cCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC--CH----HHHH--
Q 011052 159 IIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP--VV----EDVL-- 222 (494)
Q Consensus 159 VI~--------~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p--~~----~~i~-- 222 (494)
+|. +++..+++..+-.+-. .-...+|...... .+..+.+.+-.....+... .. ..+.
T Consensus 178 lVlDEADrmLd~Gf~~~i~~I~~~~p~------~~qtllfSAT~~~-~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~ 250 (513)
T COG0513 178 LVLDEADRMLDMGFIDDIEKILKALPP------DRQTLLFSATMPD-DIRELARRYLNDPVEIEVSVEKLERTLKKIKQF 250 (513)
T ss_pred EEeccHhhhhcCCCHHHHHHHHHhCCc------ccEEEEEecCCCH-HHHHHHHHHccCCcEEEEccccccccccCceEE
Confidence 882 3344444444444321 2233333322222 3555544433233222111 11 1000
Q ss_pred ------H-HHHHHHHHHHccCCccchhhhhHH---HHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEe
Q 011052 223 ------E-SSAEQVVATLNGVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292 (494)
Q Consensus 223 ------~-~~~~~~~~~l~~~~~~~~~~f~~~---a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~ 292 (494)
+ .....+...+.......+..|..+ ++++...+....+.++..|.. +++..+.+.+...+.+...++|+
T Consensus 251 ~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~-l~q~~R~~~l~~F~~g~~~vLVa 329 (513)
T COG0513 251 YLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGD-LPQEERDRALEKFKDGELRVLVA 329 (513)
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCC-CCHHHHHHHHHHHHcCCCCEEEE
Confidence 0 122233333333333333333222 222111111111111111111 33333445556667889999999
Q ss_pred cCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecC
Q 011052 293 RDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP 341 (494)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~ 341 (494)
+|. +.++++.++|.++++++.|...++ ||+++++...+.+-+|+.-.
T Consensus 330 TDv--aaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 330 TDV--AARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred ech--hhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 999 789999999999999999977665 89999988877777888753
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.2e-08 Score=106.11 Aligned_cols=193 Identities=18% Similarity=0.307 Sum_probs=122.5
Q ss_pred HHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccH-----HHHHHHH
Q 011052 7 EEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-----RTILSDL 81 (494)
Q Consensus 7 ~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-----~~~L~~l 81 (494)
..||-....+ ..++++||-|||..-+ .+...--.....+.+...........+............ ..++..+
T Consensus 337 ARdvA~~Ra~-~~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 337 ARDVAVLRAK-KENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred HHHHHHHHHH-HhCCCEEEecCCCCHH--HHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 3455433333 3689999999997544 333321122233444332222223334333333222222 3455555
Q ss_pred HHHhccCCcEEEEcCChh------------------------------------------------------------hH
Q 011052 82 ITVYAKGGKTIVFTQTKR------------------------------------------------------------DA 101 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~------------------------------------------------------------~~ 101 (494)
-+.+..+.++|+|.|.|- -+
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 556677889999987654 44
Q ss_pred HHHHHHHhc---cCceeeecCCCCHHH--HHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC------CC----
Q 011052 102 DEVSLALTS---IIASEALHGDISQHQ--RERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL------PN---- 166 (494)
Q Consensus 102 ~~l~~~L~~---~~~~~~lhg~~~~~~--R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~------P~---- 166 (494)
+.+.+.|.+ ..++..+.++.+... -+..++.|.+|+.+|||.|.+++.|.|+|++++|...|. |+
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 666666664 245667777765543 467899999999999999999999999999998764332 21
Q ss_pred --ChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 167 --DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 167 --~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
....+.|-+||+||.+++|.+++-....+...++.+
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHH
Confidence 345568999999999999999887655555555544
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.2e-07 Score=101.58 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=53.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc--cCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~--GiDip~v 156 (494)
.++||.|||++.|.++++.+.+ .+.+..+||+.+...+...++. ..+|||+|+ .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccchhhe
Confidence 5899999999999999988764 3678899999998887777654 678999997 2222 3667777
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
.+||
T Consensus 161 ~~lV 164 (572)
T PRK04537 161 EICV 164 (572)
T ss_pred eeeE
Confidence 7766
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.9e-08 Score=105.43 Aligned_cols=131 Identities=25% Similarity=0.386 Sum_probs=94.6
Q ss_pred CCCcEEEEeecCChH--HHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcC
Q 011052 19 PKRQSMLFSATMPSW--VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (494)
Q Consensus 19 ~~~q~ll~SATlp~~--i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~ 96 (494)
+.-+++..|||..+. -..+.+..+.- ++ + .......+|...|+.. .-.+.+..+++.+. .-.|||++
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlgF----ev-G-~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG--~GgLIfV~ 343 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLGF----EV-G-SGGEGLRNIVDIYVES---ESLEKVVELVKKLG--DGGLIFVP 343 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhCC----cc-C-ccchhhhheeeeeccC---ccHHHHHHHHHHhC--CCeEEEEE
Confidence 456889999997432 22344444431 11 1 1223345666666655 33444556676663 47899999
Q ss_pred C---hhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEec----hhhhccCCCCc-ccEEEecCCC
Q 011052 97 T---KRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DVAARGLDIPN-VDLIIHYELP 165 (494)
Q Consensus 97 t---~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT----~~~~~GiDip~-v~~VI~~~~P 165 (494)
+ ++.+++|++.|+. ++.+..+|+. .++.++.|..|++++||.. .++-||||+|. +.++|.|+.|
T Consensus 344 ~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 344 IDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9 9999999999996 7999999984 3788999999999999875 48999999996 6789988877
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.9e-08 Score=108.62 Aligned_cols=168 Identities=18% Similarity=0.164 Sum_probs=115.7
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
++..||.|.-.+-.++.+.|--+ ++.+ +............. +......|.. ++..+...+..+.++||-|.+.+.
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~--v~~i-Pt~kp~~r~d~~d~-iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~ 580 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY--VLQV-PTFKPCLRIDHNDE-FYMTEREKYHAIVAEIASIHRKGNPILIGTESVEV 580 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEEC-CCCCCceeeeCCCc-EecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 56678888866666666655322 2222 21111111111111 2233334544 556667777788899999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---ccc-----EEEecCCCCChhhH
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NVD-----LIIHYELPNDPETF 171 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---~v~-----~VI~~~~P~~~~~y 171 (494)
.+.++..|.+ +++..+|+..-...+-+-+-+.=+ .-.|.|||++|+||.||. .|. |||....|.+..--
T Consensus 581 se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~--~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid 658 (970)
T PRK12899 581 SEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGK--LGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRID 658 (970)
T ss_pred HHHHHHHHHHcCCcceecccchhhhHHHHHHhcCC--CCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHH
Confidence 9999999985 788888888733223222223222 346999999999999993 333 89999999999999
Q ss_pred HHHhcccCCCCCCceEEEecChhh
Q 011052 172 VHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 172 ~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
.|-.||+||.|.+|.+.+|++-.|
T Consensus 659 ~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 659 RQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred HHHhcccccCCCCCceeEEEEcch
Confidence 999999999999999999887665
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-08 Score=109.22 Aligned_cols=167 Identities=19% Similarity=0.189 Sum_probs=115.9
Q ss_pred EEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHH-HHHHHHHHHhccCCcEEEEcCChhhH
Q 011052 23 SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR-TILSDLITVYAKGGKTIVFTQTKRDA 101 (494)
Q Consensus 23 ~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~-~~L~~ll~~~~~~~~~IVF~~t~~~~ 101 (494)
+--||.|...+-.++.+.|--+ ++. ++........+.....+ .....|. .++..+...+..+.++||-|.|.+..
T Consensus 566 LsGMTGTA~tea~Ef~~IY~L~--Vv~-IPTnrP~~R~D~~D~vy-~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~S 641 (1112)
T PRK12901 566 LAGMTGTAETEAGEFWDIYKLD--VVV-IPTNRPIARKDKEDLVY-KTKREKYNAVIEEITELSEAGRPVLVGTTSVEIS 641 (1112)
T ss_pred hcccCCCCHHHHHHHHHHhCCC--EEE-CCCCCCcceecCCCeEe-cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHH
Confidence 4467788777666666666333 222 22111111111111222 2333454 45566667777889999999999999
Q ss_pred HHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC---cc-----cEEEecCCCCChhhHH
Q 011052 102 DEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP---NV-----DLIIHYELPNDPETFV 172 (494)
Q Consensus 102 ~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip---~v-----~~VI~~~~P~~~~~y~ 172 (494)
+.|+..|.. ++++.+|++.....+-+-+-++=+ .-.|-|||++|.||.||. .| -|||-...|.+..---
T Consensus 642 E~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~ 719 (1112)
T PRK12901 642 ELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDR 719 (1112)
T ss_pred HHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHH
Confidence 999999985 788888888744444333334333 345899999999999994 33 3899999999999999
Q ss_pred HHhcccCCCCCCceEEEecChhh
Q 011052 173 HRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 173 qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
|-.||+||.|.+|.+.+|++-.|
T Consensus 720 QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 720 QLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred HHhcccccCCCCCcceEEEEccc
Confidence 99999999999999998887655
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-07 Score=106.00 Aligned_cols=168 Identities=20% Similarity=0.198 Sum_probs=115.5
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
.+.-||.|...+-.++.+.|--+ ++. ++..............+ .....|.. ++..+...+..+.++||-|.|.+.
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~--Vv~-IPTnkP~~R~D~~d~vy-~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~ 461 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLD--VVV-IPPNKPLARKDFNDLVY-LTAEEKYAAIITDIKECMALGRPVLVGTATIET 461 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCC--EEE-CCCCCCcccccCCCeEE-cCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHH
Confidence 45667888877766676666332 222 22222222222222222 23344554 445666666778999999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC-------------------------
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------------------------- 154 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip------------------------- 154 (494)
.+.++..|.+ +++..+|+..-...+-+-+-+.=+ .-.|.|||++|.||.||.
T Consensus 462 SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~--~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 462 SEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGR--PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCC--CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 9999999986 788888887643333333333322 345999999999999993
Q ss_pred -------ccc-----EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 155 -------NVD-----LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 155 -------~v~-----~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
.|. |||-...|.+..---|-.||+||.|.+|.+.+|++-.|
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 222 78888899999999999999999999999999887654
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.1e-07 Score=95.48 Aligned_cols=266 Identities=12% Similarity=0.151 Sum_probs=151.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHh----ccCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCccc
Q 011052 88 GGKTIVFTQTKRDADEVSLALT----SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v~ 157 (494)
...+||+++|++.+.++..+.. +++...+++|+-...++.+.+++ ...|++||+ ...--||+..|+
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkr----gveiiiatPgrlndL~~~n~i~l~siT 369 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR----GVEIIIATPGRLNDLQMDNVINLASIT 369 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc----CceEEeeCCchHhhhhhcCeeeeeeeE
Confidence 4578999999999998876665 35788889998888888888777 889999998 233446677777
Q ss_pred EEEe------cCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh-CCCcee----------------cC
Q 011052 158 LIIH------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV-GCKFEF----------------VS 214 (494)
Q Consensus 158 ~VI~------~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~-~~~~~~----------------~~ 214 (494)
++|. .|+-..+ .+-++==-= ++-...++.+..-..-++.|...+ +..+.. +.
T Consensus 370 YlVlDEADrMLDMgFEp--qIrkilldi---RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~ 444 (629)
T KOG0336|consen 370 YLVLDEADRMLDMGFEP--QIRKILLDI---RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNII 444 (629)
T ss_pred EEEecchhhhhcccccH--HHHHHhhhc---CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEE
Confidence 7663 2221111 111110000 123333444443334455554333 221110 11
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCccchhhhh--HHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEe
Q 011052 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFT--PTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLT 292 (494)
Q Consensus 215 ~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~--~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~ 292 (494)
.++..+-+ .....+.+.+.+ +...+.+.. -.|+.|-..+.-..+.+.-+|.. ..|..+++.+...+.|.++++++
T Consensus 445 v~~d~~k~-~~~~~f~~~ms~-ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~-r~Q~DrE~al~~~ksG~vrILva 521 (629)
T KOG0336|consen 445 VTTDSEKL-EIVQFFVANMSS-NDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGN-REQSDREMALEDFKSGEVRILVA 521 (629)
T ss_pred ecccHHHH-HHHHHHHHhcCC-CceEEEEEechhhhhhccchhhhcccchhhccCC-hhhhhHHHHHHhhhcCceEEEEE
Confidence 12222221 111111111111 111122211 11222222222222222222222 23445556677788999999999
Q ss_pred cCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecC-HHHHHHHHhhcCCCCCceEeeccCCC
Q 011052 293 RDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP-EEIAKELLNKQIPPGNTISKITKLPA 367 (494)
Q Consensus 293 ~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~-~~~~~~~~~~~~~~~~~l~v~~~LP~ 367 (494)
+|. +.++++..||.|+++++.|..-++ +|+++.+.+.+.+.+|+.-+ -..++++|+.+..++. +|+++|-.
T Consensus 522 TDl--aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQ--evPdeL~~ 597 (629)
T KOG0336|consen 522 TDL--ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQ--EVPDELVR 597 (629)
T ss_pred ech--hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhh--hCcHHHHH
Confidence 998 788999999999999999877665 89998888877667888764 5577888887766554 34555544
Q ss_pred cC
Q 011052 368 LQ 369 (494)
Q Consensus 368 ~~ 369 (494)
+.
T Consensus 598 mA 599 (629)
T KOG0336|consen 598 MA 599 (629)
T ss_pred HH
Confidence 33
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.5e-07 Score=101.51 Aligned_cols=106 Identities=21% Similarity=0.278 Sum_probs=76.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc---CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc--EEEe
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI---IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD--LIIH 161 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~---~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~--~VI~ 161 (494)
..+++|||+++.+..+.+++.|... .....+..+.. ..|.+++++|++++..||++|+.+.+|||+|+.. +||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 3579999999999999999998741 11223333333 5788999999999999999999999999999766 4555
Q ss_pred cCCCC----Ch--------------------------hhHHHHhcccCCCCCCceEEEecCh
Q 011052 162 YELPN----DP--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 162 ~~~P~----~~--------------------------~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
..+|. ++ ..+.|.+||.=|....--++++++.
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 55552 11 2237888999887644334444443
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-07 Score=89.85 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=44.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-----------CceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-----------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-----------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
+.-.||.||+++.|.+.++.+... +.+..--|+++-.++..++.+ .+.|+|||+
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATP 310 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATP 310 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCc
Confidence 456799999999999988877532 344555699999999999888 899999998
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-07 Score=92.17 Aligned_cols=248 Identities=15% Similarity=0.168 Sum_probs=153.4
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech----
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD---- 145 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~---- 145 (494)
+.+|..++..- +...++|.+||++.|.+|++.+.. ++.++++-|+|....+...+.+ +..|||||+
T Consensus 117 LPIl~~LL~~p-~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k----kPhilVaTPGrL~ 191 (476)
T KOG0330|consen 117 LPILQRLLQEP-KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK----KPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHcCC-CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc----CCCEEEeCcHHHH
Confidence 34555666532 346899999999999999988763 5789999999998877766666 788999998
Q ss_pred --hh-hccCCCCcccEEE--------ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 146 --VA-ARGLDIPNVDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 146 --~~-~~GiDip~v~~VI--------~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
+- ..|+.+..+.+.| +.|+-...+.++-.+- ...-.++++..-...+++|++..-..+..+.
T Consensus 192 dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip-------~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP-------RERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred HHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC-------ccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 22 5777777776655 5556556666666653 2333455555555667777766666666665
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCccchhhhh-HHHHHH--------HhhcCHHHHHHHHHHHcCCCCCC---------CC
Q 011052 215 PPVVEDVLESSAEQVVATLNGVHPESVEFFT-PTAQRL--------IEEKGTDALAAALAQLSGFSRPP---------SS 276 (494)
Q Consensus 215 ~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~-~~a~~l--------~~~~~~~~l~aal~~~~g~~~~~---------~~ 276 (494)
.++.-..+....+.. .-+....-..+. ....++ ..........+.++...|+...+ +.
T Consensus 265 ~s~ky~tv~~lkQ~y----lfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rl 340 (476)
T KOG0330|consen 265 VSSKYQTVDHLKQTY----LFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRL 340 (476)
T ss_pred ccchhcchHHhhhhe----EeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHH
Confidence 554433332221111 111111111110 001111 11223445666666666654322 22
Q ss_pred cccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEec
Q 011052 277 RSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL 340 (494)
Q Consensus 277 rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~ 340 (494)
-++...+.+...+++.+|. +.+++|...+..+||++.|....| +|++.++++.+.+.++|.-
T Consensus 341 g~l~~Fk~~~r~iLv~TDV--aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 341 GALNKFKAGARSILVCTDV--ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred HHHHHHhccCCcEEEecch--hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEeh
Confidence 2445567777888888888 788888888888888888876666 6888877776655566654
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=94.32 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=79.8
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~ 99 (494)
.+..||.|.-.+-.++.+.|--+ ++. ++ .+++.....+- .+......|.. ++..+...+..+.++||-|.|.+
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~--vv~-IP--tnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe 435 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLE--VVC-IP--THRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIE 435 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC--EEE-CC--CCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHH
Confidence 46677888876666666655322 222 22 22222222221 12223334544 55666777778899999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCC--HHHHHHHHccccCCCeeEEEechhhhccCCC
Q 011052 100 DADEVSLALTS-IIASEALHGDIS--QHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~--~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
..+.++..|.+ ++++.+|++.-. ..+-+-+-++ -..-.|.|||++|+||.||
T Consensus 436 ~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G~~G~VTIATNMAGRGTDI 490 (870)
T CHL00122 436 KSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--GRKGSITIATNMAGRGTDI 490 (870)
T ss_pred HHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--CCCCcEEEeccccCCCcCe
Confidence 99999999986 888999998632 2333323232 2244699999999999998
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=94.29 Aligned_cols=135 Identities=21% Similarity=0.374 Sum_probs=111.7
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCC---CeeEEEechh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQG---KFTVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g---~~~iLVaT~~ 146 (494)
..|+.+|..+|..+ ..+.+||||..-....+.+.++.. ++|..+-+.|.++.++|...++.|... ..-.|++|-+
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 46788888888665 457799999999998888888876 578999999999999999999999764 4568899999
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE--ecChh--hHHHHHHHHHHh
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTSS--QRRTVRSLERDV 206 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~--l~~~~--e~~~l~~le~~~ 206 (494)
...|||+...+.||.||-.|+|..-+|..-||.|.|++..+.+ |++.. |...+++-+..+
T Consensus 550 GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 550 GGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred cccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999997665555 55544 344455444444
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=84.07 Aligned_cols=181 Identities=17% Similarity=0.219 Sum_probs=134.4
Q ss_pred CcEEEEeecCChHHHHHHHHHcCCCc-EEEeccccc-----cccccceEEEEEEcCccc-------HHH-----HHHHHH
Q 011052 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQD-----EKLAEGIKLYAISTTATS-------KRT-----ILSDLI 82 (494)
Q Consensus 21 ~q~ll~SATlp~~i~~l~~~~l~~p~-~i~~~~~~~-----~~~~~~i~~~~~~~~~~~-------k~~-----~L~~ll 82 (494)
+|+|+||+.+.+++..+...++.|.. .+.+..... ..+...++|.+...+..+ +.+ +|..+.
T Consensus 216 RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~ 295 (442)
T PF06862_consen 216 RQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLK 295 (442)
T ss_pred eEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhh
Confidence 69999999999999999998777643 333332222 234455667666543322 221 233333
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech--hhhccCCCCcccEE
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPNVDLI 159 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~--~~~~GiDip~v~~V 159 (494)
. -.....+|||+|+--+=-.|...|++ .+....+|--.++.+-.++-..|.+|+.+||+.|. ..-+-..|.+|.+|
T Consensus 296 ~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~v 374 (442)
T PF06862_consen 296 R-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHV 374 (442)
T ss_pred h-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEE
Confidence 2 12457999999999999999999985 68888899999999999999999999999999997 44566678899999
Q ss_pred EecCCCCChhhHHHHhcccCCCC------CCceEEEecChhhHHHHHHH
Q 011052 160 IHYELPNDPETFVHRSGRTGRAG------KEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G------~~g~~i~l~~~~e~~~l~~l 202 (494)
|-|.+|..+.-|...+.-..... ....|.++++..|.-.|+.|
T Consensus 375 iFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 375 IFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred EEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 99999999999977775544433 25789999999887665555
|
; GO: 0005634 nucleus |
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=98.09 Aligned_cols=121 Identities=20% Similarity=0.377 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcc-CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccC---CCeeEEEechhhh
Q 011052 74 KRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ---GKFTVLVATDVAA 148 (494)
Q Consensus 74 k~~~L~~ll~~~~~-~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~---g~~~iLVaT~~~~ 148 (494)
|+-+|..||..+.. +.+||||.......+.|+++|.. +|+..-|.|.+..+.|..+++.|.. ..+..|+||-+.+
T Consensus 684 KlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGG 763 (1373)
T KOG0384|consen 684 KLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGG 763 (1373)
T ss_pred cEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCc
Confidence 44455666666644 47999999999999999999984 8999999999999999999999975 4678999999999
Q ss_pred ccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCce--EEEecChh
Q 011052 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS 194 (494)
Q Consensus 149 ~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~--~i~l~~~~ 194 (494)
.|||+-..+.||.||--|+|..-+|...||.|.|++-. +|-|++..
T Consensus 764 LGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 764 LGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred ccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 99999999999999999999999999999999996654 45567654
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.9e-07 Score=91.72 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=45.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+..+||..+|++.+++|.+.-.+ ++.+..+-|+++-+++---+.. .|.|+|||+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~----gceiviatP 380 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM----GCEIVIATP 380 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc----cceeeecCc
Confidence 356899999999999999887653 4788889999998887545554 789999998
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-06 Score=91.99 Aligned_cols=118 Identities=19% Similarity=0.381 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHh--ccCceeeecCCCCHHHHHHHHccccCCC--eeEEEechh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT--SIIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~--~~~~~~~lhg~~~~~~R~~~l~~Fr~g~--~~iLVaT~~ 146 (494)
.-|+++|..++... ..+.++|+|..|+...+.|...|. +++..+-+.|..+...|..++++|.++. .-.|++|.|
T Consensus 529 sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrv 608 (923)
T KOG0387|consen 529 SGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRV 608 (923)
T ss_pred cchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecc
Confidence 45888888888665 456799999999999999999998 4899999999999999999999999765 336899999
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
..-|+|+-..+-||.||+-|+|.+-.|..-|+-|.|++-.+++
T Consensus 609 GGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~V 651 (923)
T KOG0387|consen 609 GGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVV 651 (923)
T ss_pred cccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEE
Confidence 9999999999999999999999999999999999997655544
|
|
| >PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.3e-07 Score=70.79 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=48.9
Q ss_pred eEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHHHHHhhcCC
Q 011052 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 287 ~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~ 354 (494)
|+++++.++ +++++|++|.++|+...++..++||+|.+.+++ |||++|++.++++++.+..
T Consensus 1 vrl~in~Gr---~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~----S~vev~~~~a~~v~~~l~~ 61 (74)
T PF03880_consen 1 VRLFINVGR---KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNF----SFVEVPEEVAEKVLEALNG 61 (74)
T ss_dssp -EEEES-SG---GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT-HHHHHHHHTT
T ss_pred CEEEEEccc---ccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeE----EEEEECHHHHHHHHHHhcC
Confidence 588999998 899999999999999999999999999999999 7999999999999998764
|
; PDB: 2G0C_A 3MOJ_B. |
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.8e-07 Score=99.13 Aligned_cols=69 Identities=23% Similarity=0.253 Sum_probs=54.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc-cCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~-GiDip~ 155 (494)
..++||.|||++.|.++++.+.. .+.+..+||+.+...+.+.++. ..+|+|+|+ .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 35899999999999999888763 4678899999988877776654 678999996 3333 367888
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+.+||
T Consensus 150 l~~lV 154 (629)
T PRK11634 150 LSGLV 154 (629)
T ss_pred ceEEE
Confidence 88877
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-06 Score=88.79 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=76.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-------hhhccCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARGLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-------~~~~GiDip~v 156 (494)
.++||.|||++.+-+++...++ .+.++..-|+|+-..++.+|.. ..+|+|||| --+.+.|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchhHHHHhccCCCccccce
Confidence 4899999999999998887663 3677888899999999999988 789999998 23445666777
Q ss_pred cEEEecCCCC--------ChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCc
Q 011052 157 DLIIHYELPN--------DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 210 (494)
Q Consensus 157 ~~VI~~~~P~--------~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~ 210 (494)
.++|.-.... ....+++.| .+....++++..-...++.|....-.++
T Consensus 329 EVLvlDEADRMLeegFademnEii~lc-------pk~RQTmLFSATMteeVkdL~slSL~kP 383 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEGFADEMNEIIRLC-------PKNRQTMLFSATMTEEVKDLASLSLNKP 383 (691)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHhc-------cccccceeehhhhHHHHHHHHHhhcCCC
Confidence 7666433332 233334444 2334455666666666666666543333
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.3e-06 Score=91.33 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=90.9
Q ss_pred ccHHHHHHHHHHHhcc--CCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCC---eeEEEech
Q 011052 72 TSKRTILSDLITVYAK--GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~~--~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~---~~iLVaT~ 145 (494)
..|+..|..++..... ..++++..|.+...+.+....+ +++.++.|||.|+..+|+.+++.|.+-. .-.|.+|-
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 3456666666543311 1234444455554444444443 3789999999999999999999998733 44677889
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEe
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l 190 (494)
+.+.||++-..+.||.||++|+|+.-.|.+.|+-|.|++-.|+++
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999999999999999999988888774
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.6e-06 Score=90.56 Aligned_cols=127 Identities=17% Similarity=0.149 Sum_probs=79.1
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHhccCCcEEEEcCChhh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVYAKGGKTIVFTQTKRD 100 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~~~~~~~IVF~~t~~~ 100 (494)
.+.-||.|.-.+-.++.+.|--+ ++.+ +...........-.. ......|.. ++.++...+..+.++||-|.|.+.
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~l~--Vv~I-PTnkP~~R~d~~d~v-y~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~ 451 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYKLE--VTVI-PTNRPRRRQDWPDQV-YKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEK 451 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhCCc--EEEc-CCCCCeeeecCCCeE-EcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHH
Confidence 55677888766666666666332 2222 111111111111112 223335554 445666667788999999999999
Q ss_pred HHHHHHHHhc-cCceeeecCCCCHHHHHH-HHccccCCCeeEEEechhhhccCCC
Q 011052 101 ADEVSLALTS-IIASEALHGDISQHQRER-TLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 101 ~~~l~~~L~~-~~~~~~lhg~~~~~~R~~-~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
.+.++..|.+ ++++.+|+..-.+.+++. ++.. .-..-.|.|||++|.||.||
T Consensus 452 SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~-AG~~GaVTIATNMAGRGTDI 505 (939)
T PRK12902 452 SELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ-AGRKGAVTIATNMAGRGTDI 505 (939)
T ss_pred HHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh-cCCCCcEEEeccCCCCCcCE
Confidence 9999999986 888888988632323333 3322 22234599999999999998
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=90.03 Aligned_cols=122 Identities=20% Similarity=0.336 Sum_probs=101.3
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCC--eeEEEechhh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDVA 147 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~--~~iLVaT~~~ 147 (494)
..|++.|.-||..+ ..+.+||||+....+.+-|..+|.- ++..+-|.|....++|+..+++|.... +..|++|-.-
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 46777777777665 4567999999999999999999984 677888999999999999999998654 5678899999
Q ss_pred hccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceE--EEecCh
Q 011052 148 ARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA--ILMFTS 193 (494)
Q Consensus 148 ~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~--i~l~~~ 193 (494)
..|||+-..+.||.||--|++..-.|.--||.|.|++-.+ |-|++.
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 9999999999999999999998888877788887755444 445554
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.1e-06 Score=92.24 Aligned_cols=118 Identities=21% Similarity=0.342 Sum_probs=99.7
Q ss_pred ccHHHHHHHHHHHhc---------------cCCcEEEEcCChhhHHHHHHHHhcc----CceeeecCCCCHHHHHHHHcc
Q 011052 72 TSKRTILSDLITVYA---------------KGGKTIVFTQTKRDADEVSLALTSI----IASEALHGDISQHQRERTLNG 132 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~---------------~~~~~IVF~~t~~~~~~l~~~L~~~----~~~~~lhg~~~~~~R~~~l~~ 132 (494)
..|+.+|.++|.... ...++||||.-+...+.+.+.|.+. +....|.|..++.+|.++.++
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 357788888876541 2358999999999999999888752 334578999999999999999
Q ss_pred ccCC-CeeEE-EechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 133 FRQG-KFTVL-VATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 133 Fr~g-~~~iL-VaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
|.++ .++|| ++|.|.+-|+|+...+.||.++--|++..-+|..-||.|.|++-++-+
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNV 1447 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNV 1447 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeee
Confidence 9998 77766 678999999999999999999999999999999999999997765443
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.5e-07 Score=96.98 Aligned_cols=251 Identities=15% Similarity=0.202 Sum_probs=127.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhcc-CCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-LDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~G-iDip~v~ 157 (494)
..+||.|||++.|.++++.+.+ .+.+.+++|+.+...+...+.. .++|||+|+ .+..+ +++..++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~----~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRR----GVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHc----CCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 4689999999999999988874 3678889999988777666654 678999997 33333 6677888
Q ss_pred EEEe--cCC--CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH-hCCCceec-----CCCCH---------
Q 011052 158 LIIH--YEL--PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD-VGCKFEFV-----SPPVV--------- 218 (494)
Q Consensus 158 ~VI~--~~~--P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~-~~~~~~~~-----~~p~~--------- 218 (494)
+||. .|. -...+..+.++-..-+ ...-+++++.+-...++.+.+. +......+ .....
T Consensus 280 ~lViDEAd~mld~gf~~~i~~il~~~~---~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~ 356 (545)
T PTZ00110 280 YLVLDEADRMLDMGFEPQIRKIVSQIR---PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFV 356 (545)
T ss_pred EEEeehHHhhhhcchHHHHHHHHHhCC---CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEE
Confidence 7773 221 1111111222211112 2222333332211222222222 11111100 00000
Q ss_pred --HHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCC---------CCCCCcccccCCCCce
Q 011052 219 --EDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFS---------RPPSSRSLINHEQGWV 287 (494)
Q Consensus 219 --~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~---------~~~~~rsl~~~~~~~~ 287 (494)
+......+..++..+.. ....+-.|....+ ..+.++..|. ..++. +..+...+...+.+.+
T Consensus 357 ~~~~~k~~~L~~ll~~~~~-~~~k~LIF~~t~~------~a~~l~~~L~-~~g~~~~~ihg~~~~~eR~~il~~F~~G~~ 428 (545)
T PTZ00110 357 VEEHEKRGKLKMLLQRIMR-DGDKILIFVETKK------GADFLTKELR-LDGWPALCIHGDKKQEERTWVLNEFKTGKS 428 (545)
T ss_pred EechhHHHHHHHHHHHhcc-cCCeEEEEecChH------HHHHHHHHHH-HcCCcEEEEECCCcHHHHHHHHHHHhcCCC
Confidence 00011112222222221 1111222211100 0122222221 12221 1111122334556777
Q ss_pred EEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecC-HHHHHHHHhhcCCCC
Q 011052 288 TLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP-EEIAKELLNKQIPPG 356 (494)
Q Consensus 288 t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~-~~~~~~~~~~~~~~~ 356 (494)
.++|+++. +..++|.++|..+|+...|...++ +||+++....+.+-+||+-. ...+.++++.+...+
T Consensus 429 ~ILVaTdv--~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~ 500 (545)
T PTZ00110 429 PIMIATDV--ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAK 500 (545)
T ss_pred cEEEEcch--hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHcc
Confidence 88999987 678899999999998887766554 78888776665555777654 345666666655544
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.5e-06 Score=89.29 Aligned_cols=264 Identities=15% Similarity=0.157 Sum_probs=133.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh------hhccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~------~~~GiDip~v~ 157 (494)
.++||.+||++.|.++++.+.. .+.+..++|+.+...+..++.. ..+|||||+- ....+++.+++
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE----NQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC----CCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 5899999999999999887653 4678899999998888777754 6789999982 23456778888
Q ss_pred EEEecC----CCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceec-CCCCHHH------------
Q 011052 158 LIIHYE----LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV-SPPVVED------------ 220 (494)
Q Consensus 158 ~VI~~~----~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~-~~p~~~~------------ 220 (494)
+||.=+ +.......+.++-..-+. ....++|-.......+..+.+.+......+ ..+...+
T Consensus 150 ~lViDEah~~l~~~~~~~~~~i~~~~~~--~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~ 227 (434)
T PRK11192 150 TLILDEADRMLDMGFAQDIETIAAETRW--RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRAD 227 (434)
T ss_pred EEEEECHHHHhCCCcHHHHHHHHHhCcc--ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeC
Confidence 777322 222222333333221111 112233322223334444444443222111 1111000
Q ss_pred HHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCC---------CCCCCCcccccCCCCceEEEE
Q 011052 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGF---------SRPPSSRSLINHEQGWVTLQL 291 (494)
Q Consensus 221 i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~---------~~~~~~rsl~~~~~~~~t~~~ 291 (494)
-.+.....+...+........-.|....+ ..+.++..|.. .++ ++..+...+...+.|.+.++|
T Consensus 228 ~~~~k~~~l~~l~~~~~~~~~lVF~~s~~------~~~~l~~~L~~-~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLV 300 (434)
T PRK11192 228 DLEHKTALLCHLLKQPEVTRSIVFVRTRE------RVHELAGWLRK-AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLV 300 (434)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEeCChH------HHHHHHHHHHh-CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 01111112222222212222222211100 01122222221 111 111112223345677889999
Q ss_pred ecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecCHHHHHHHHhhcCCCCCceEeeccCCC
Q 011052 292 TRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPA 367 (494)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~~~~~l~v~~~LP~ 367 (494)
+++. +..++|.+++..+|+...+...++ +||+++....+.+-++++..+.....-++.+....+...+++.+++
T Consensus 301 aTd~--~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~~~~~~~~~ 378 (434)
T PRK11192 301 ATDV--AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKARVIDELRP 378 (434)
T ss_pred Eccc--cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccccccccccc
Confidence 9987 678899999999998877765444 6777776555444456655443333333333333332233444443
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.9e-06 Score=86.31 Aligned_cols=69 Identities=10% Similarity=0.193 Sum_probs=52.8
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----h-hccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~-~~GiDip~v~ 157 (494)
.++||.+||++.|.++++.+.. ++.+..++|+.+...+...++. ..+|||+|+- + ..-+++.++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLES----GVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCccccccc
Confidence 5799999999999999877652 4678889999887766665543 6789999982 2 2346778888
Q ss_pred EEEe
Q 011052 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 8773
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.7e-06 Score=86.98 Aligned_cols=238 Identities=14% Similarity=0.200 Sum_probs=124.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhh-ccCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~-~GiDip~v 156 (494)
.++||.|||++.|.++++.++. .+.+..++|+.+...+...++. ..+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~----~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEH----GAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcC----CCCEEEEChHHHHHHHHcCCccHHHC
Confidence 3799999999999999988763 3678889999999887776663 788999996 333 35778888
Q ss_pred cEEEecCC--------CCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh-CCCcee-c-------------
Q 011052 157 DLIIHYEL--------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV-GCKFEF-V------------- 213 (494)
Q Consensus 157 ~~VI~~~~--------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~-~~~~~~-~------------- 213 (494)
.+||.-+. -.+....++.. ....-+++++.+-...+..+.+.. ...... +
T Consensus 149 ~~lViDEad~~l~~g~~~~l~~i~~~~-------~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~ 221 (460)
T PRK11776 149 NTLVLDEADRMLDMGFQDAIDAIIRQA-------PARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRF 221 (460)
T ss_pred CEEEEECHHHHhCcCcHHHHHHHHHhC-------CcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEE
Confidence 88873221 11122222222 112223333332223333333332 221111 0
Q ss_pred -CCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcC---------CCCCCCCcccccCC
Q 011052 214 -SPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSG---------FSRPPSSRSLINHE 283 (494)
Q Consensus 214 -~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g---------~~~~~~~rsl~~~~ 283 (494)
..+. .+ ....+...+....+...-.|..+.+ ..+.++..|.. .+ +++..+.+.+...+
T Consensus 222 ~~~~~-~~----k~~~l~~ll~~~~~~~~lVF~~t~~------~~~~l~~~L~~-~~~~v~~~hg~~~~~eR~~~l~~F~ 289 (460)
T PRK11776 222 YEVSP-DE----RLPALQRLLLHHQPESCVVFCNTKK------ECQEVADALNA-QGFSALALHGDLEQRDRDQVLVRFA 289 (460)
T ss_pred EEeCc-HH----HHHHHHHHHHhcCCCceEEEECCHH------HHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 0111 11 1122222222222222222211100 01122222211 11 11111222334456
Q ss_pred CCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecCHHHHHHHHhh
Q 011052 284 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (494)
Q Consensus 284 ~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~ 351 (494)
.+...++|+++. +..++|.+++..+|+...|...+. +||+++....+.+-+++...+......++.
T Consensus 290 ~g~~~vLVaTdv--~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~ 359 (460)
T PRK11776 290 NRSCSVLVATDV--AARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIED 359 (460)
T ss_pred cCCCcEEEEecc--cccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHH
Confidence 677889999987 688899999999998887765443 788887766554445555544333333443
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.7e-05 Score=87.23 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=61.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccCc---eeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCc--ccEEEe
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSIIA---SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN--VDLIIH 161 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~---~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~--v~~VI~ 161 (494)
.++++|||+++.+..+.+++.|..... ...+.-+++...|.+++++|+.++-.||++|..+.+|||+|+ +++||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999975321 222332444456788999999888889999999999999986 467876
Q ss_pred cCCC
Q 011052 162 YELP 165 (494)
Q Consensus 162 ~~~P 165 (494)
..+|
T Consensus 831 ~kLP 834 (928)
T PRK08074 831 VRLP 834 (928)
T ss_pred ecCC
Confidence 6655
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.6e-05 Score=82.23 Aligned_cols=82 Identities=28% Similarity=0.459 Sum_probs=70.1
Q ss_pred eeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecC-CCCChhhHHHHhcccCCCC--CCceEEEe
Q 011052 114 SEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (494)
Q Consensus 114 ~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~-~P~~~~~y~qr~GR~gR~G--~~g~~i~l 190 (494)
+-++|++|...+|..+.--||.|...||+||..++-|||+|.-++|.--| +--++-.|.|++|||||.| ..|.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 34689999999999999999999999999999999999999888777655 4568889999999999998 45777776
Q ss_pred cChhh
Q 011052 191 FTSSQ 195 (494)
Q Consensus 191 ~~~~e 195 (494)
--|..
T Consensus 1045 giP~~ 1049 (1330)
T KOG0949|consen 1045 GIPRQ 1049 (1330)
T ss_pred eCcHH
Confidence 55543
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00034 Score=78.16 Aligned_cols=94 Identities=21% Similarity=0.253 Sum_probs=69.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhccCc--eeeecCCCCHHHHHHHHccccCCCe-eEEEechhhhccCCCCcc--cEEEec
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSIIA--SEALHGDISQHQRERTLNGFRQGKF-TVLVATDVAARGLDIPNV--DLIIHY 162 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~~~--~~~lhg~~~~~~R~~~l~~Fr~g~~-~iLVaT~~~~~GiDip~v--~~VI~~ 162 (494)
++++|||+++.+..+.+++.+..... ....++..+ +...+++|+...- -++|+|..+++|||+|+- ..||..
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 46999999999999999999986432 445555543 4478888876554 899999999999999854 667766
Q ss_pred CCCCC------------------------------hhhHHHHhcccCCCCCC
Q 011052 163 ELPND------------------------------PETFVHRSGRTGRAGKE 184 (494)
Q Consensus 163 ~~P~~------------------------------~~~y~qr~GR~gR~G~~ 184 (494)
.+|.. .....|.+||.=|.-..
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D 607 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDD 607 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCC
Confidence 66531 23348999999995433
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00014 Score=82.79 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=57.3
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhcc-CceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCc--ccEEEec
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN--VDLIIHY 162 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~~-~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~--v~~VI~~ 162 (494)
..+++++|++++.+..+.+++.|... +.+ ...|.-. .+.+++++|+++.-.||++|..+.+|||+|. ...||..
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~ 721 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVIT 721 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEe
Confidence 34689999999999999999998742 333 3334221 2456899999988889999999999999973 4455554
Q ss_pred CCC
Q 011052 163 ELP 165 (494)
Q Consensus 163 ~~P 165 (494)
.+|
T Consensus 722 kLP 724 (820)
T PRK07246 722 RLP 724 (820)
T ss_pred cCC
Confidence 444
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.1e-05 Score=85.00 Aligned_cols=118 Identities=19% Similarity=0.304 Sum_probs=102.1
Q ss_pred cHHHHHHHHH-HH-hccCC--cEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCC--CeeEEEech
Q 011052 73 SKRTILSDLI-TV-YAKGG--KTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (494)
Q Consensus 73 ~k~~~L~~ll-~~-~~~~~--~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~iLVaT~ 145 (494)
.|...+.+++ .. ..... ++|||++.....+.+...+.. .+..+.++|.++.++|...+++|.++ ..-++++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 6777777777 33 34445 899999999999999999986 46899999999999999999999985 456778889
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEe
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l 190 (494)
+...|+|+-..++||+||..|++....|...|+.|.|++..+.++
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999999999999999999999999977665553
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=81.43 Aligned_cols=124 Identities=19% Similarity=0.300 Sum_probs=107.6
Q ss_pred cccHHHHHHHHHHHhc-cCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCC---eeEEEech
Q 011052 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~---~~iLVaT~ 145 (494)
...|.++|..++..+. .++++|.||......+.+..+|. +.+...-+.|.....+|-..++.|..-. ...|.+|-
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 4578999999987763 46899999999999999999998 4788889999999999999999998643 55789999
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChh
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~ 194 (494)
....|+|+...+.||.||.-|++....|+--|+.|.|..-.+-++....
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 9999999999999999999999999999999999999777666654433
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00033 Score=78.55 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=57.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccC-ceeeecCCCCHHHHHHHHcccc----CCCeeEEEechhhhccCCCCc--ccEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSII-ASEALHGDISQHQRERTLNGFR----QGKFTVLVATDVAARGLDIPN--VDLI 159 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~-~~~~lhg~~~~~~R~~~l~~Fr----~g~~~iLVaT~~~~~GiDip~--v~~V 159 (494)
..+.+|||+++.+..+++++.|.... .....++. ..+.++++.|+ .++..||++|..+.+|||+|+ +++|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 45679999999999999999987422 22344554 24667786666 466779999999999999986 6788
Q ss_pred EecCCC
Q 011052 160 IHYELP 165 (494)
Q Consensus 160 I~~~~P 165 (494)
|...+|
T Consensus 610 II~kLP 615 (697)
T PRK11747 610 IITKIP 615 (697)
T ss_pred EEEcCC
Confidence 876655
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.5e-05 Score=80.70 Aligned_cols=122 Identities=20% Similarity=0.334 Sum_probs=103.1
Q ss_pred cHHHHHHHHHHHhcc-CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCC--eeEEEechhhh
Q 011052 73 SKRTILSDLITVYAK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATDVAA 148 (494)
Q Consensus 73 ~k~~~L~~ll~~~~~-~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~--~~iLVaT~~~~ 148 (494)
.|...|..+|....+ +.++|||..-....+.|...|.. .+...-|.|...-..|+.+++.|...+ .-.|++|-+.+
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG 840 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGG 840 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCc
Confidence 467778888877644 57999999999998888888874 788899999999999999999998654 45789999999
Q ss_pred ccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCce--EEEecChh
Q 011052 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGT--AILMFTSS 194 (494)
Q Consensus 149 ~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~--~i~l~~~~ 194 (494)
-|||+-..++||.+|+..+|-.-.|.--||.|.|++-. ++.|++..
T Consensus 841 ~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 841 FGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred ceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecC
Confidence 99999999999999999999999999999999996544 44456554
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0002 Score=79.85 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=73.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc------CceeeecCCCCHH---------------------HHHHHHccccC-CCee
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI------IASEALHGDISQH---------------------QRERTLNGFRQ-GKFT 139 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~------~~~~~lhg~~~~~---------------------~R~~~l~~Fr~-g~~~ 139 (494)
..+++|||.++..|..+++.|.+. ...+++++..+.. ....++++|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999999999888642 2344555543322 22468889976 6789
Q ss_pred EEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCC
Q 011052 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 140 iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~ 181 (494)
|||++|++..|.|.|.+++++..-+-.+. .++|.+||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 99999999999999999988877766654 589999999994
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=76.28 Aligned_cols=106 Identities=25% Similarity=0.352 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHhc-cCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccC-CCeeEEEechhhhcc
Q 011052 73 SKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQ-GKFTVLVATDVAARG 150 (494)
Q Consensus 73 ~k~~~L~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~-g~~~iLVaT~~~~~G 150 (494)
.|..+..-|++.+. .+.++|||....-...+.+-.|.+ -.++|..+|.+|.++++.|+- ..++-+.-+.|....
T Consensus 527 ~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtS 602 (776)
T KOG1123|consen 527 NKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTS 602 (776)
T ss_pred chhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCcc
Confidence 45666666776663 467999999888777777666654 358999999999999999985 467888889999999
Q ss_pred CCCCcccEEEecCCC-CChhhHHHHhcccCCCC
Q 011052 151 LDIPNVDLIIHYELP-NDPETFVHRSGRTGRAG 182 (494)
Q Consensus 151 iDip~v~~VI~~~~P-~~~~~y~qr~GR~gR~G 182 (494)
+|+|..+++|+.... -+..+-.||.||.-|+.
T Consensus 603 iDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 603 IDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred ccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 999999999986544 46677789999988875
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00018 Score=81.45 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=65.3
Q ss_pred EEEcCChhhHHHHHHHHhc-------cCceeeecCCCCHHHHHHHHccc----------------------cC----CCe
Q 011052 92 IVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGF----------------------RQ----GKF 138 (494)
Q Consensus 92 IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~~~~~~R~~~l~~F----------------------r~----g~~ 138 (494)
+|-+++++.+-.++..|.. .+.++++|+..+...|..+.+.. ++ +..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 6667777777777777752 24578899998777775544332 11 356
Q ss_pred eEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCC
Q 011052 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 139 ~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~ 183 (494)
.|+|||++++.|+|+. .+++|- -|.+..+.+|++||+.|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhccccccc
Confidence 7999999999999983 444443 36789999999999999873
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=75.75 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=96.6
Q ss_pred cHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCC-CeeE-EEechh
Q 011052 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATDV 146 (494)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~i-LVaT~~ 146 (494)
.|.++|..-|..+ ...-+.|||..-....+.|.-.|.+ ++.|+-|.|+|++.+|..+++.|++. .+.| ||+-.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkA 699 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKA 699 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEecc
Confidence 4566655444333 2234889999999999999999987 89999999999999999999999875 4554 566677
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCC--CCceEEEecCh
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAG--KEGTAILMFTS 193 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~ 193 (494)
...-+|+-...+|+.+|+-|++.--.|.-.|..|.| ++-.++.|+-+
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 777899999999999999999999999888888888 34455556543
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.75 E-value=9e-05 Score=76.70 Aligned_cols=104 Identities=19% Similarity=0.378 Sum_probs=89.6
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCC-CeeE-EEechhhhccCCCCcccEEEec
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG-KFTV-LVATDVAARGLDIPNVDLIIHY 162 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~i-LVaT~~~~~GiDip~v~~VI~~ 162 (494)
.+..|.+|||.-....+.|...+.+ ++...-+.|..+...|....+.|... ++.| +++-.++..||++...+.||..
T Consensus 490 ~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFa 569 (689)
T KOG1000|consen 490 APPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFA 569 (689)
T ss_pred CCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEE
Confidence 3567999999999999999999985 78899999999999999999999764 3443 3455688999999999999999
Q ss_pred CCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 163 ELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 163 ~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
.+|+++.-++|.--|+.|.|++..+.+
T Consensus 570 EL~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred EecCCCceEEechhhhhhccccceeeE
Confidence 999999999999999999997755444
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.5e-05 Score=84.02 Aligned_cols=244 Identities=13% Similarity=0.180 Sum_probs=129.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC----------
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI---------- 153 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi---------- 153 (494)
.-+||.|||++.+.+|.+.++. .+.+++.+|+....++...+++ ...|+|||+ .|.||+
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkR----g~eIvV~tp--GRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKR----GAEIVVCTP--GRMIDILCANSGRVTN 512 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhc----CCceEEecc--chhhhhHhhcCCcccc
Confidence 4579999999999999998874 4788999999988888777766 488999998 344443
Q ss_pred -CcccEEEe------cC--CCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceec-----------
Q 011052 154 -PNVDLIIH------YE--LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV----------- 213 (494)
Q Consensus 154 -p~v~~VI~------~~--~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~----------- 213 (494)
-.+++|+. +| +-.....++|.+ |+-| -.++++.+....+..+.+..-.++..+
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nl-rpdr------QtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~ 585 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNL-RPDR------QTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKE 585 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhc-chhh------hhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEecc
Confidence 34445551 22 222333378877 4333 234444444444666655442222111
Q ss_pred ------CCCCHHHHHHHHHHHHHHHHccC--Cccchhhhh--HHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCC
Q 011052 214 ------SPPVVEDVLESSAEQVVATLNGV--HPESVEFFT--PTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHE 283 (494)
Q Consensus 214 ------~~p~~~~i~~~~~~~~~~~l~~~--~~~~~~~f~--~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~ 283 (494)
..+...+- ..++.+.|... ....+.+.. +.+..+.+.+....+.+..+|.. .++..+.-.+...+
T Consensus 586 V~q~v~V~~~e~eK----f~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGg-v~q~dR~sti~dfK 660 (997)
T KOG0334|consen 586 VTQVVRVCAIENEK----FLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGG-VDQHDRSSTIEDFK 660 (997)
T ss_pred ceEEEEEecCchHH----HHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCC-CchHHHHhHHHHHh
Confidence 11111111 11111111110 111111111 11222222222222222222222 34433333455677
Q ss_pred CCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEec-CHHHHHHHHhhc
Q 011052 284 QGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDL-PEEIAKELLNKQ 352 (494)
Q Consensus 284 ~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~-~~~~~~~~~~~~ 352 (494)
.+.+.|++.++. +++++++.++.=+|++..+.--+| +|+++++...+.+-+|++- ....+.++.+.+
T Consensus 661 ~~~~~LLvaTsv--varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 661 NGVVNLLVATSV--VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred ccCceEEEehhh--hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 888899998887 688888888876666666554443 5666666555423344444 233445555544
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=80.01 Aligned_cols=91 Identities=25% Similarity=0.387 Sum_probs=75.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhccC------ceeeecCCCCHHHHHHHHccccC--CCeeEEEechhhhccCCCCcccEEE
Q 011052 89 GKTIVFTQTKRDADEVSLALTSII------ASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~~------~~~~lhg~~~~~~R~~~l~~Fr~--g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
+|+||||.+..+|+.+.+.|.+.+ .+..+.++..+.++ .++.|.. .-.+|.|+.+++..|||+|.|..+|
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHH--HHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 699999999999999999998532 37788888665544 3555543 3456889999999999999999999
Q ss_pred ecCCCCChhhHHHHhcccCCC
Q 011052 161 HYELPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~ 181 (494)
.+-.-.|...|.||+||.-|.
T Consensus 505 F~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 505 FDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999998884
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=81.06 Aligned_cols=119 Identities=24% Similarity=0.289 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
..++.++...+..+.|+||-+.+.+..+.+...|.+ +++..+|...-. +|+.-+-.+.-..--|-|||++|.||.||
T Consensus 416 ~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~gaVTiATNMAGRGTDI 493 (822)
T COG0653 416 KAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPGAVTIATNMAGRGTDI 493 (822)
T ss_pred HHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCCccccccccccCCccc
Confidence 456677777788899999999999999999999985 788888877644 44433333333233588999999999999
Q ss_pred C---ccc--------EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 154 P---NVD--------LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 154 p---~v~--------~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
. +.. +||-..--.+..---|-.||+||.|.+|.+..|++-.+
T Consensus 494 kLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 494 KLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred ccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 3 321 45554444454445699999999999999888776554
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.6e-05 Score=67.90 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=70.8
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccC---ceeeecCCCCHHHHHHHHccccCCCeeEEEech--hhhccCCCCc--ccEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLI 159 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~--~~~~GiDip~--v~~V 159 (494)
.++.+|||+++.+..+.+++.+.... ...++.- .......+++.|+++.-.||+|+. .+..|||+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 35899999999999999999988532 1222222 355788899999999999999998 9999999985 7788
Q ss_pred EecCCCC----Ch--------------------------hhHHHHhcccCCCCCCceEEEecCh
Q 011052 160 IHYELPN----DP--------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 160 I~~~~P~----~~--------------------------~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
|...+|. ++ ....|.+||+=|....--++++++.
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 8888773 21 1116889999998755444445544
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0008 Score=67.29 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=46.8
Q ss_pred CcEEEEcCChhhHHHHHHHHh-----ccCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 89 GKTIVFTQTKRDADEVSLALT-----SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~-----~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.-++||+||++.|-++++.+. ..+++.++.|+++.-.+...|.+ +-+++|||+
T Consensus 76 iFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~----rPHvVvatP 133 (442)
T KOG0340|consen 76 IFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD----RPHVVVATP 133 (442)
T ss_pred ceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc----CCCeEecCc
Confidence 468999999999999999986 25789999999999888888877 788999998
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00029 Score=72.64 Aligned_cols=243 Identities=18% Similarity=0.224 Sum_probs=135.6
Q ss_pred cEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc---cCCCCc
Q 011052 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR---GLDIPN 155 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~---GiDip~ 155 (494)
-+||.+||++.|.+|.+-+.. .+.+..+-|+.+..+ -++.|++...+|||+|| ++.+ .+|+-.
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 579999999999999887763 356888889976654 45667777889999998 3333 455557
Q ss_pred ccEEE--------ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC--------CCCHH
Q 011052 156 VDLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS--------PPVVE 219 (494)
Q Consensus 156 v~~VI--------~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~--------~p~~~ 219 (494)
+.++| ++++-.+..+.+-+.-+--|.| +++.+....+..|.+.---+...+. .|+.-
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTG-------LFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L 230 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTG-------LFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSL 230 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccc-------cccchhhHHHHHHHHhhccCceeeeecccccccCchhh
Confidence 77666 3455556666666666555554 3444444445555443211111111 11100
Q ss_pred HH----H--HHHHHHHHHHHccCC----------ccchhhhhHHHHHHHhhcCHHHHHHHHHHHcC-CCCCCCCcccccC
Q 011052 220 DV----L--ESSAEQVVATLNGVH----------PESVEFFTPTAQRLIEEKGTDALAAALAQLSG-FSRPPSSRSLINH 282 (494)
Q Consensus 220 ~i----~--~~~~~~~~~~l~~~~----------~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g-~~~~~~~rsl~~~ 282 (494)
.. + ......+++-|.... +..+++|......++.... +..+-| +.++.+.+.+...
T Consensus 231 ~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~-------i~~iHGK~~q~~R~k~~~~F 303 (567)
T KOG0345|consen 231 ALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKRE-------IFSIHGKMSQKARAKVLEAF 303 (567)
T ss_pred cceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCc-------EEEecchhcchhHHHHHHHH
Confidence 00 0 012223333333322 2233333333333311100 000000 1122222223222
Q ss_pred CCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecCHHHHHHHHhh
Q 011052 283 EQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (494)
Q Consensus 283 ~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~ 351 (494)
....-.+++.+|. +++++|.++|+-+|..+.|...+- .|++.++++.+.+-+|..-.++...+++..
T Consensus 304 ~~~~~~vl~~TDV--aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i 374 (567)
T KOG0345|consen 304 RKLSNGVLFCTDV--AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI 374 (567)
T ss_pred HhccCceEEeehh--hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh
Confidence 2233456778887 788999999999998888876654 788888888776666666666666677654
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00022 Score=74.75 Aligned_cols=238 Identities=13% Similarity=0.203 Sum_probs=126.5
Q ss_pred cEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhcc-C---CCCc
Q 011052 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG-L---DIPN 155 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~G-i---Dip~ 155 (494)
-.|||+||++.|.+|...|.. .+.++.+.|||+...+++++++ .-+|+|||+ +...+ . ++.+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 389999999999999999872 5889999999999999999998 678999999 22222 1 3456
Q ss_pred ccEEEecCCC--------CChhhHHHHhcccCCCCCCceEEEecC------hh-----------hH---HHHHHHHHHhC
Q 011052 156 VDLIIHYELP--------NDPETFVHRSGRTGRAGKEGTAILMFT------SS-----------QR---RTVRSLERDVG 207 (494)
Q Consensus 156 v~~VI~~~~P--------~~~~~y~qr~GR~gR~G~~g~~i~l~~------~~-----------e~---~~l~~le~~~~ 207 (494)
|.++|.-... .....++-.++ --+....-..++|-. .. +. ..++.|.+.++
T Consensus 341 vkcLVlDEaDRmvekghF~Els~lL~~L~-e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig 419 (731)
T KOG0347|consen 341 VKCLVLDEADRMVEKGHFEELSKLLKHLN-EEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIG 419 (731)
T ss_pred ceEEEEccHHHHhhhccHHHHHHHHHHhh-hhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhC
Confidence 6765532211 12223333333 111111222222211 00 00 12222323332
Q ss_pred C--CceecCCCCHHHHHHHHHHHHHHHHccCCccchh------------hhhHH---HHH---HHhhcCH--HHHHHHHH
Q 011052 208 C--KFEFVSPPVVEDVLESSAEQVVATLNGVHPESVE------------FFTPT---AQR---LIEEKGT--DALAAALA 265 (494)
Q Consensus 208 ~--~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~------------~f~~~---a~~---l~~~~~~--~~l~aal~ 265 (494)
. +...+.+...........+..+.. ...+.+..- .|-.. +.+ ++..++. -.|-|.+
T Consensus 420 ~~~kpkiiD~t~q~~ta~~l~Es~I~C-~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M- 497 (731)
T KOG0347|consen 420 FRGKPKIIDLTPQSATASTLTESLIEC-PPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASM- 497 (731)
T ss_pred ccCCCeeEecCcchhHHHHHHHHhhcC-CccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHH-
Confidence 2 123333333333333333322221 001111100 11100 111 1111110 0011111
Q ss_pred HHcCCCCCCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecC
Q 011052 266 QLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLP 341 (494)
Q Consensus 266 ~~~g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~ 341 (494)
.|..+.++|...++.-.++++++|. |+++++...|.|+||+..|...+- -|++.++...++.-.+++-+
T Consensus 498 -----~QKqRLknLEkF~~~~~~VLiaTDV--AARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~ 570 (731)
T KOG0347|consen 498 -----IQKQRLKNLEKFKQSPSGVLIATDV--AARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQ 570 (731)
T ss_pred -----HHHHHHHhHHHHhcCCCeEEEeehh--hhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChH
Confidence 1112234566666777899999999 899999999999999998866543 58888888877544445443
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00036 Score=75.00 Aligned_cols=118 Identities=19% Similarity=0.326 Sum_probs=102.1
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCC-CeeEEEechhhh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQG-KFTVLVATDVAA 148 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~iLVaT~~~~ 148 (494)
..|+..|..+|..+ ..+.++|+|+...+..+.+.++|. +++...-|.|.....+|..++..|... .+-.|++|-+..
T Consensus 1027 SgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGG 1106 (1185)
T KOG0388|consen 1027 SGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGG 1106 (1185)
T ss_pred ccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCc
Confidence 35677777777666 346799999999999999999997 488899999999999999999999864 455789999999
Q ss_pred ccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 149 RGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 149 ~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
.||++...+.||.||-.|++..-.|...|+.|-|++-.+.+
T Consensus 1107 LGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1107 LGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred ccccccccceEEEecCCCCcchhhHHHHHHHhccCccceee
Confidence 99999999999999999999999999999999997655433
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0014 Score=62.83 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=56.0
Q ss_pred cEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCccc
Q 011052 90 KTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v~ 157 (494)
.++|.|.|++.|-+|.....+ .+++.+++|+++.+.-+++++. -..|+|+|+ +-.+-+++.+|.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 679999999999999877653 3678999999999988888877 667999998 445678888888
Q ss_pred EEEe
Q 011052 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+-|.
T Consensus 188 hFvl 191 (387)
T KOG0329|consen 188 HFVL 191 (387)
T ss_pred eeeh
Confidence 7663
|
|
| >KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00091 Score=66.08 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=7.0
Q ss_pred eeccCCCcCCC
Q 011052 361 KITKLPALQDD 371 (494)
Q Consensus 361 v~~~LP~~~~~ 371 (494)
.+.++|+++..
T Consensus 315 pppempswqqq 325 (465)
T KOG3973|consen 315 PPPEMPSWQQQ 325 (465)
T ss_pred CCCCCCcHHHh
Confidence 34577777764
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0069 Score=68.28 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=57.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-C-------ceeeecCCCCHHHHHHHHccccC----CCeeEEEec--hhhhccCCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-I-------ASEALHGDISQHQRERTLNGFRQ----GKFTVLVAT--DVAARGLDI 153 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-~-------~~~~lhg~~~~~~R~~~l~~Fr~----g~~~iLVaT--~~~~~GiDi 153 (494)
++.+|||+++....+.+++.+... + +...+-+ -...++..++++|+. +.-.||+|+ ..+++|||+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 588999999999999998887631 1 1122211 112577889999964 345699998 889999999
Q ss_pred Cc--ccEEEecCCCC
Q 011052 154 PN--VDLIIHYELPN 166 (494)
Q Consensus 154 p~--v~~VI~~~~P~ 166 (494)
++ ++.||..++|.
T Consensus 601 ~~~~~r~ViivGlPf 615 (705)
T TIGR00604 601 CDDLGRAVIMVGIPY 615 (705)
T ss_pred CCCCCcEEEEEccCC
Confidence 86 67888888875
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0019 Score=71.05 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=61.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccCc-eeeecCCCCHHHHHHHHccccCC----CeeEEEechhhhccCCC--------
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSIIA-SEALHGDISQHQRERTLNGFRQG----KFTVLVATDVAARGLDI-------- 153 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~-~~~lhg~~~~~~R~~~l~~Fr~g----~~~iLVaT~~~~~GiDi-------- 153 (494)
..+.++|.+.+....+.+++.|...+. ...+.|+.+ .+...+++|+.. .-.||++|+.+..|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 467999999999999999999986543 344556543 345678888863 67899999999999999
Q ss_pred --CcccEEEecCCCC
Q 011052 154 --PNVDLIIHYELPN 166 (494)
Q Consensus 154 --p~v~~VI~~~~P~ 166 (494)
..+++||...+|.
T Consensus 547 ~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 547 KDNLLTDLIITCAPF 561 (636)
T ss_pred CCCcccEEEEEeCCC
Confidence 3478888877774
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0058 Score=66.36 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=49.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hh-hccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~-~~GiDip~v 156 (494)
+.++||.+||++.|.++++.++. .+.+..+.|+.+..++...+.. ..+|+|+|+ .+ ...+++.++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~----~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQ----GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcC----CCCEEEECHHHHHHHHHcCCccchhe
Confidence 45799999999999998877653 2456677777666555444433 578999996 33 335778888
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 272 ~~lVi 276 (518)
T PLN00206 272 SVLVL 276 (518)
T ss_pred eEEEe
Confidence 87773
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0014 Score=74.02 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=42.5
Q ss_pred EechhhhccCCCCc----------------------c----------cEEEecCCCCChhhHHH--HhcccCCCCCCceE
Q 011052 142 VATDVAARGLDIPN----------------------V----------DLIIHYELPNDPETFVH--RSGRTGRAGKEGTA 187 (494)
Q Consensus 142 VaT~~~~~GiDip~----------------------v----------~~VI~~~~P~~~~~y~q--r~GR~gR~G~~g~~ 187 (494)
|+|.+...|+|+|. + ++||.|++-.+.-.-+| |++|++|. +.+
T Consensus 431 ~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~---~rV 507 (814)
T TIGR00596 431 FEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP---LRV 507 (814)
T ss_pred ccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC---cEE
Confidence 77888899999997 5 89999997777666677 88887775 566
Q ss_pred EEecCh---hhHHHHHHHH
Q 011052 188 ILMFTS---SQRRTVRSLE 203 (494)
Q Consensus 188 i~l~~~---~e~~~l~~le 203 (494)
|+++.. .|.+++..+.
T Consensus 508 yfL~y~~S~EEq~yl~sir 526 (814)
T TIGR00596 508 YFLYYGGSIEEQRYLTSLR 526 (814)
T ss_pred EEEEECCcHHHHHHHHHHH
Confidence 666543 3444555543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0026 Score=66.22 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=63.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------------hhhc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------------VAAR 149 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------------~~~~ 149 (494)
+-.+||.|||++.|-+++..++. .+.+..+-|+-.-..-+. +..+ .++|||||+ .+.+
T Consensus 154 ~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~---kl~k-~~niliATPGRLlDHlqNt~~f~~r 229 (543)
T KOG0342|consen 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD---KLVK-GCNILIATPGRLLDHLQNTSGFLFR 229 (543)
T ss_pred CeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH---Hhhc-cccEEEeCCchHHhHhhcCCcchhh
Confidence 34789999999999999888763 344556666644333233 3333 899999998 1111
Q ss_pred cC---CCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHH
Q 011052 150 GL---DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERD 205 (494)
Q Consensus 150 Gi---Dip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~ 205 (494)
-+ =+...+++...+++.+++..+--..+ . ...++++......++.+.+.
T Consensus 230 ~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk------~-rqt~LFSAT~~~kV~~l~~~ 281 (543)
T KOG0342|consen 230 NLKCLVLDEADRLLDIGFEEDVEQIIKILPK------Q-RQTLLFSATQPSKVKDLARG 281 (543)
T ss_pred ccceeEeecchhhhhcccHHHHHHHHHhccc------c-ceeeEeeCCCcHHHHHHHHH
Confidence 11 12334445567778888877777653 1 22334444444445555443
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.012 Score=65.42 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=47.4
Q ss_pred HHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC------CC------ChhhHHHHhcccCCCCCCceEEEecChh
Q 011052 127 ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL------PN------DPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 127 ~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~------P~------~~~~y~qr~GR~gR~G~~g~~i~l~~~~ 194 (494)
+.+++.|.. +.+|||+|..++-.+. +++++|+..|. |. ....+.|-+||+||..+.|.+++...+.
T Consensus 462 d~~l~~~~~-~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p~ 539 (665)
T PRK14873 462 DQVVDTVDA-GPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAESS 539 (665)
T ss_pred HHHHHhhcc-CCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCC
Confidence 347788864 8999999993322222 46676664442 21 2344588999999999999999875443
Q ss_pred hHHHHHHH
Q 011052 195 QRRTVRSL 202 (494)
Q Consensus 195 e~~~l~~l 202 (494)
...++.+
T Consensus 540 -~~~~~~l 546 (665)
T PRK14873 540 -LPTVQAL 546 (665)
T ss_pred -CHHHHHH
Confidence 3344443
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0094 Score=68.86 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=51.0
Q ss_pred cCCcEEEEcCChhhHH-HHHHHHhccCceeeecCCCCHHHHHHHHccccC--CCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDAD-EVSLALTSIIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~-~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~--g~~~iLVaT~~ 146 (494)
..+.+||.+|+++.+. ++......++.+..+.++++..++..++..+.. +.++||++|+.
T Consensus 499 ~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 499 CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 3578999999999997 555555568999999999999999999998876 88999999984
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.002 Score=69.06 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=53.7
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
..+.+||.+|+++.+++....|.. ++.+..++++.+..++..++...+.+..+||++|+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 457899999999999988888875 788999999999999999999999999999999984
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0034 Score=69.71 Aligned_cols=118 Identities=18% Similarity=0.239 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc----c-------------------CceeeecCCCCHHHHHH
Q 011052 73 SKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS----I-------------------IASEALHGDISQHQRER 128 (494)
Q Consensus 73 ~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~----~-------------------~~~~~lhg~~~~~~R~~ 128 (494)
.|+-+|.+||... .-+.++|||..+....+.|..+|.. + .....|.|..+..+|++
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 4566677777654 3468999999999999988888861 0 13456888999999999
Q ss_pred HHccccCC----CeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEe
Q 011052 129 TLNGFRQG----KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILM 190 (494)
Q Consensus 129 ~l~~Fr~g----~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l 190 (494)
+.+.|.+- ..-.||+|-+.+.|||+-..+.||.||..|++..-+|-+=|+-|.|++--||++
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999863 234799999999999999999999999999999999999999999988777764
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0071 Score=67.03 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=4.4
Q ss_pred ccc-EEEeec
Q 011052 322 IGK-IHIIAD 330 (494)
Q Consensus 322 ig~-i~~~~~ 330 (494)
.|. |-+.|+
T Consensus 1075 dgq~IV~VDd 1084 (1282)
T KOG0921|consen 1075 DGQGIVRVDD 1084 (1282)
T ss_pred cCcceEEeec
Confidence 444 555444
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0011 Score=77.91 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=62.9
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccCCCCcccEE
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLDIPNVDLI 159 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~GiDip~v~~V 159 (494)
..+.+++|.|||++.|.++++.+.+ .+.+..+++..+..++..+++..+++.++|||+|+- +...+++.++.+|
T Consensus 647 ~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 647 ENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred HcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEE
Confidence 4568999999999999999998874 246778999999999999999999999999999974 4444667788877
Q ss_pred E
Q 011052 160 I 160 (494)
Q Consensus 160 I 160 (494)
|
T Consensus 727 V 727 (1147)
T PRK10689 727 I 727 (1147)
T ss_pred E
Confidence 6
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0011 Score=73.09 Aligned_cols=101 Identities=21% Similarity=0.426 Sum_probs=80.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc--------------cC--ceeeecCCCCHHHHHHHHc---cccCCCeeEEEechhhhc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS--------------II--ASEALHGDISQHQRERTLN---GFRQGKFTVLVATDVAAR 149 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~--------------~~--~~~~lhg~~~~~~R~~~l~---~Fr~g~~~iLVaT~~~~~ 149 (494)
.++|-||.+.++..++++.+.. .+ .+..+.|.|.-.+|...+. .|...+|+||--.-.+++
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 3789999999988888877641 12 3445668899888865553 466788999999999999
Q ss_pred cCCCCcccEEEecCCCCChhhHHHHhcccCCC--C-CCceEEE
Q 011052 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRA--G-KEGTAIL 189 (494)
Q Consensus 150 GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~--G-~~g~~i~ 189 (494)
|+|+|.++.||.+++-.+.-+.+|.+||+-|- | +-|..|+
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 99999999999999999999999999999994 3 2355555
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0041 Score=66.75 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=51.2
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh------hhccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~------~~~GiDip~v~ 157 (494)
.++||.+||++.|.++++.++. ++.+..+||+.+...+.+.+ ..+..+|||+|+- ....+.+.+++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~---~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQL---EARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHH---hCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 5799999999999999887763 36788899998766554433 3456789999982 22345667777
Q ss_pred EEEe
Q 011052 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 240 ~lVi 243 (475)
T PRK01297 240 VMVL 243 (475)
T ss_pred eEEe
Confidence 7763
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0069 Score=67.95 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=68.5
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccCCC
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLDI 153 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~GiDi 153 (494)
.++.....+.+++|.+||++.|.++++.+++ ++.+..+||+++..+|.++++...+|.++|+|+|+. +...+.+
T Consensus 302 ~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~ 381 (681)
T PRK10917 302 AALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEF 381 (681)
T ss_pred HHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchh
Confidence 3444445667999999999999999998874 378899999999999999999999999999999984 4445678
Q ss_pred CcccEEEe
Q 011052 154 PNVDLIIH 161 (494)
Q Consensus 154 p~v~~VI~ 161 (494)
.++.+||.
T Consensus 382 ~~l~lvVI 389 (681)
T PRK10917 382 HNLGLVII 389 (681)
T ss_pred cccceEEE
Confidence 88888773
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.06 Score=62.02 Aligned_cols=185 Identities=14% Similarity=0.218 Sum_probs=114.1
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcC-cccH-HH----HHHHHHH
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-ATSK-RT----ILSDLIT 83 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-~~~k-~~----~L~~ll~ 83 (494)
+..|-+++-++.+++.+|..+.+. +.+ .++...-.+++..... ..+..++...+... ..+. .. .+..+..
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R-~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~ 1354 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSVR-PVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR 1354 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhccc-hhh--ccccccceeecCcccC-CCceeEEEEEeccchhHHHHHHhhhhHHHHHHH
Confidence 455666666777888887776442 333 2333333444432211 11222222222111 1111 11 1223333
Q ss_pred HhccCCcEEEEcCChhhHHHHHHHHhc-----------------------cCceeeecCCCCHHHHHHHHccccCCCeeE
Q 011052 84 VYAKGGKTIVFTQTKRDADEVSLALTS-----------------------IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~-----------------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~i 140 (494)
......+++||+++++.|..++..|-. .+++.+=|-+|+..++..+-.-|..|.++|
T Consensus 1355 ~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v 1434 (1674)
T KOG0951|consen 1355 HAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQV 1434 (1674)
T ss_pred HhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEE
Confidence 334568999999999999888765421 123333488999999999999999999999
Q ss_pred EEechhhhccCCCCcccEEE----ecC------CCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 141 LVATDVAARGLDIPNVDLII----HYE------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 141 LVaT~~~~~GiDip~v~~VI----~~~------~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
+|...- ..|+-...--+|| -|| .+.++....|+.|+|.| .|.|++++....+.+.++.
T Consensus 1435 ~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1435 CVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 998765 6676664433333 133 46678889999999998 5789999988887766654
|
|
| >KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0093 Score=59.16 Aligned_cols=12 Identities=0% Similarity=0.249 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhC
Q 011052 196 RRTVRSLERDVG 207 (494)
Q Consensus 196 ~~~l~~le~~~~ 207 (494)
...+..|+..+.
T Consensus 164 ~~lfe~i~~kl~ 175 (465)
T KOG3973|consen 164 WKLFETIRQKLD 175 (465)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0094 Score=67.46 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=51.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-hhhcc-C--------C
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARG-L--------D 152 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-~~~~G-i--------D 152 (494)
+..++||.+||++.+.++...++. .+.+..++|+.+..+|..+.+ ..+|+|+|+ .+..+ + .
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~-----~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWARE-----HARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhc-----CCCEEEEChHHHHHhhccchhHHHHH
Confidence 446899999999999999998874 367888999999887754433 368999996 22222 1 1
Q ss_pred CCcccEEEe
Q 011052 153 IPNVDLIIH 161 (494)
Q Consensus 153 ip~v~~VI~ 161 (494)
+.++++||.
T Consensus 155 l~~l~~vVi 163 (742)
T TIGR03817 155 LRRLRYVVI 163 (742)
T ss_pred HhcCCEEEE
Confidence 567787773
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.018 Score=62.40 Aligned_cols=117 Identities=16% Similarity=0.264 Sum_probs=91.3
Q ss_pred cHHHHHHHHHHHh--ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccC--CCeeE-EEechh
Q 011052 73 SKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTV-LVATDV 146 (494)
Q Consensus 73 ~k~~~L~~ll~~~--~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~--g~~~i-LVaT~~ 146 (494)
.|...+..++... ....+++|...-.....-+...|++ +.....+||.+...+|+.+++.|.. +..+| |++-.+
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 3444444444332 3456888877766666777777876 6778899999999999999999954 43444 556678
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
.+.|||+-..+|+|..|+.|++.--.|.+-|.-|.|++-.+++
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 8889999999999999999999999999999999997766655
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.013 Score=65.70 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=70.6
Q ss_pred ccHHHHHHHHH-HHhccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh
Q 011052 72 TSKRTILSDLI-TVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (494)
Q Consensus 72 ~~k~~~L~~ll-~~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~ 148 (494)
..|.++...++ .....+.++||.+||++.+.++++.|++ +..+..+||+++..+|.+.+.+..++..+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 34655544333 2334567999999999999999999986 45788999999999999999999999999999998543
Q ss_pred ccCCCCcccEEEec
Q 011052 149 RGLDIPNVDLIIHY 162 (494)
Q Consensus 149 ~GiDip~v~~VI~~ 162 (494)
-+.+.++.+||.-
T Consensus 253 -~~p~~~l~liVvD 265 (679)
T PRK05580 253 -FLPFKNLGLIIVD 265 (679)
T ss_pred -cccccCCCEEEEE
Confidence 2566788887743
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.014 Score=64.89 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=68.2
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh-ccCCC
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-RGLDI 153 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~-~GiDi 153 (494)
.++.....+.+++|.+||+..|.++++.+++ ++.+..+||+++..+|..+++...+|+.+|+|+|+..- ..+++
T Consensus 276 ~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~ 355 (630)
T TIGR00643 276 AMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEF 355 (630)
T ss_pred HHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccc
Confidence 3444555677999999999999999988874 47899999999999999999999999999999998543 35677
Q ss_pred CcccEEEe
Q 011052 154 PNVDLIIH 161 (494)
Q Consensus 154 p~v~~VI~ 161 (494)
.++.+||.
T Consensus 356 ~~l~lvVI 363 (630)
T TIGR00643 356 KRLALVII 363 (630)
T ss_pred cccceEEE
Confidence 78888773
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.017 Score=62.40 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=70.1
Q ss_pred ccHHHHHHHHHH-HhccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh
Q 011052 72 TSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (494)
Q Consensus 72 ~~k~~~L~~ll~-~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~ 148 (494)
.-|.++...++. .+..+.++||.+|++..+.++++.|++ +..+..+|++++..+|.++..+.++|+.+|+|+|..+-
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 345555444443 334567999999999999999999986 35688999999999999999999999999999998654
Q ss_pred ccCCCCcccEEEe
Q 011052 149 RGLDIPNVDLIIH 161 (494)
Q Consensus 149 ~GiDip~v~~VI~ 161 (494)
-+.++++.+||.
T Consensus 88 -f~p~~~l~lIIV 99 (505)
T TIGR00595 88 -FLPFKNLGLIIV 99 (505)
T ss_pred -cCcccCCCEEEE
Confidence 356778887773
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.018 Score=57.01 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=59.7
Q ss_pred HHHccccCCCeeEEEechhhhccCCCCc--------ccEEEecCCCCChhhHHHHhcccCCCCCC-ceEEEec-C--hhh
Q 011052 128 RTLNGFRQGKFTVLVATDVAARGLDIPN--------VDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAILMF-T--SSQ 195 (494)
Q Consensus 128 ~~l~~Fr~g~~~iLVaT~~~~~GiDip~--------v~~VI~~~~P~~~~~y~qr~GR~gR~G~~-g~~i~l~-~--~~e 195 (494)
...+.|.+|+..|+|.|+.++.||-+.. -++-|...+||+.+..+|..||+.|.++. .-.|.++ + +-|
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 4566899999999999999999998852 23567789999999999999999999853 3334433 2 346
Q ss_pred HHHHHHHHHHh
Q 011052 196 RRTVRSLERDV 206 (494)
Q Consensus 196 ~~~l~~le~~~ 206 (494)
++....+.+.+
T Consensus 132 ~Rfas~va~rL 142 (278)
T PF13871_consen 132 RRFASTVARRL 142 (278)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0083 Score=58.50 Aligned_cols=244 Identities=12% Similarity=0.127 Sum_probs=124.7
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhh-ccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAA-RGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~-~GiDip~ 155 (494)
..-++||..||++.|.++.+-+.. ++.|.+.-|+.+-.+-.+.++- ...++..|| +.. +.+...+
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~----G~hvVsGtPGrv~dmikr~~L~tr~ 169 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDY----GQHVVSGTPGRVLDMIKRRSLRTRA 169 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcc----cceEeeCCCchHHHHHHhccccccc
Confidence 346899999999999999887763 3566666777776666666663 567888887 333 3466677
Q ss_pred ccEEEecCCC--CChhhHHHHhcccCCCCCCceEEEecChh-hHHHHHHHHHHhCCCceecCCC---CHHHHHH------
Q 011052 156 VDLIIHYELP--NDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSPP---VVEDVLE------ 223 (494)
Q Consensus 156 v~~VI~~~~P--~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~~~~~p---~~~~i~~------ 223 (494)
|.++|.-... -+. -|-+.+=+.-|.=.++..+++++.. ....++..+++...++.....+ +.+-+.+
T Consensus 170 vkmlVLDEaDemL~k-gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve 248 (400)
T KOG0328|consen 170 VKMLVLDEADEMLNK-GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE 248 (400)
T ss_pred eeEEEeccHHHHHHh-hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec
Confidence 7776642211 010 1222222233333456666665543 3345556666655444322111 1111111
Q ss_pred --HHHHHHHHHHc-cCCccchhhhhHH---HHHHHhhcCHHHHHHHHHHHcCCCCCCCCcc--cccCCCCceEEEEecCC
Q 011052 224 --SSAEQVVATLN-GVHPESVEFFTPT---AQRLIEEKGTDALAAALAQLSGFSRPPSSRS--LINHEQGWVTLQLTRDS 295 (494)
Q Consensus 224 --~~~~~~~~~l~-~~~~~~~~~f~~~---a~~l~~~~~~~~l~aal~~~~g~~~~~~~rs--l~~~~~~~~t~~~~~~~ 295 (494)
.|....+..|- .+...+...|-.+ ..-|-+......+...-.|. +-+.++|. ....+.+..++++.+|.
T Consensus 249 ~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHG---Dm~qkERd~im~dFRsg~SrvLitTDV 325 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHG---DMEQKERDKIMNDFRSGKSRVLITTDV 325 (400)
T ss_pred hhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccC---CcchhHHHHHHHHhhcCCceEEEEech
Confidence 11111111111 0111111111111 11111111111111111111 11222232 33456778899999987
Q ss_pred ccccCccchhHHHHHhhhhcCcCccc-cccEEEeecCCcceeEEec
Q 011052 296 AFSRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQGAVFDL 340 (494)
Q Consensus 296 ~~~~~~~~~~~i~~~i~~~~~~~~~~-ig~i~~~~~~~~~gs~~d~ 340 (494)
-++++++..+..+|+++.|..++- |-+|++..+|+..|+.++.
T Consensus 326 --waRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainF 369 (400)
T KOG0328|consen 326 --WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINF 369 (400)
T ss_pred --hhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEE
Confidence 477899999999999999887764 5555555666655655554
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.021 Score=65.95 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=70.2
Q ss_pred ccHHHHH-HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 72 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 72 ~~k~~~L-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.-|..+. ..++.....+.+++|.+||+..|++.++.+.+ .+.+..+++.++..++.++++.+++|+++|+|+|+
T Consensus 483 sGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp 562 (926)
T TIGR00580 483 FGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTH 562 (926)
T ss_pred ccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchH
Confidence 3454432 23344444568999999999999999998874 35678899999999999999999999999999998
Q ss_pred -hhhccCCCCcccEEEe
Q 011052 146 -VAARGLDIPNVDLIIH 161 (494)
Q Consensus 146 -~~~~GiDip~v~~VI~ 161 (494)
.+...+.+.++.+||.
T Consensus 563 ~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 563 KLLQKDVKFKDLGLLII 579 (926)
T ss_pred HHhhCCCCcccCCEEEe
Confidence 4445577888888773
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.094 Score=54.00 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=52.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v~ 157 (494)
-+++|..+|++.+.+..+.++. .+.+.++.|+-+.+++-..+.. +-+|++||+ .++.-+++..|.
T Consensus 91 ~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~----npDii~ATpgr~~h~~vem~l~l~sve 166 (529)
T KOG0337|consen 91 LRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNE----NPDIIIATPGRLLHLGVEMTLTLSSVE 166 (529)
T ss_pred cceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhcc----CCCEEEecCceeeeeehheecccccee
Confidence 4999999999999988777763 3566666676666666666654 678999998 455567888999
Q ss_pred EEEe
Q 011052 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 167 yVVf 170 (529)
T KOG0337|consen 167 YVVF 170 (529)
T ss_pred eeee
Confidence 9993
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.21 Score=55.98 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
......++..+..+.++-|||.|...++.+++.... ..++..+++.-+..+ ++.+ ++++|+|=|+++..|+++
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W--~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW--KKYDVVIYTPVITVGLSF 342 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc--cceeEEEEeceEEEEecc
Confidence 344556666666778889999999999999988876 456777777655442 2233 478999999999999999
Q ss_pred Cccc--EEEec--CCC--CChhhHHHHhcccCCCC
Q 011052 154 PNVD--LIIHY--ELP--NDPETFVHRSGRTGRAG 182 (494)
Q Consensus 154 p~v~--~VI~~--~~P--~~~~~y~qr~GR~gR~G 182 (494)
.... -|.-| ... .+..+..|++||+-...
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~ 377 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL 377 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc
Confidence 6543 23333 222 35556899999976554
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.13 Score=57.08 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=53.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
..+.+||.+|+++.+.+..+.|.. ++.+..+++..+..++..+++..+.+.++++++|+.
T Consensus 64 ~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe 124 (607)
T PRK11057 64 LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPE 124 (607)
T ss_pred cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChH
Confidence 457899999999999988888875 788889999999999999999999999999999963
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.095 Score=52.13 Aligned_cols=249 Identities=15% Similarity=0.173 Sum_probs=119.9
Q ss_pred CcEEEEcCChhhHHH---HHHHHhc--cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhccC-CCCccc
Q 011052 89 GKTIVFTQTKRDADE---VSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL-DIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~---l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~Gi-Dip~v~ 157 (494)
-+++|.+||++.|-+ ++..|.+ ++.+++..|+.+-.+-..-+ +..+.++|+|+ .+..|+ |+.++.
T Consensus 154 IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl----~~~VH~~vgTPGRIlDL~~KgVa~ls~c~ 229 (459)
T KOG0326|consen 154 IQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRL----NQTVHLVVGTPGRILDLAKKGVADLSDCV 229 (459)
T ss_pred eeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeee----cCceEEEEcCChhHHHHHhcccccchhce
Confidence 478999999997765 4555555 46788889997654433222 23789999997 566665 456665
Q ss_pred EEEe--------cCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHH-HHHHhCCCceec-----CCCCHH----
Q 011052 158 LIIH--------YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRS-LERDVGCKFEFV-----SPPVVE---- 219 (494)
Q Consensus 158 ~VI~--------~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~-le~~~~~~~~~~-----~~p~~~---- 219 (494)
.+|. .++-..++..+.-.- +...+++|+..-.-.++. +.+++..+.+.- .+.-..
T Consensus 230 ~lV~DEADKlLs~~F~~~~e~li~~lP-------~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYa 302 (459)
T KOG0326|consen 230 ILVMDEADKLLSVDFQPIVEKLISFLP-------KERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYA 302 (459)
T ss_pred EEEechhhhhhchhhhhHHHHHHHhCC-------ccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhhee
Confidence 5542 223344555555552 234455555433333322 233333332210 000000
Q ss_pred HHHHHHHHHHHHHHc-cCCccc-hhhhhHH--HHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEecCC
Q 011052 220 DVLESSAEQVVATLN-GVHPES-VEFFTPT--AQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDS 295 (494)
Q Consensus 220 ~i~~~~~~~~~~~l~-~~~~~~-~~~f~~~--a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~~~~ 295 (494)
-+.+...-..+..|- .+..++ +.+..++ .+-|.+.-..-.+.....|.- +.|.-++|-.-..+.|.++.++.+|.
T Consensus 303 fV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHak-M~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAK-MAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred eechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHH-HHHhhhhhhhhhhhccccceeeehhh
Confidence 000011111111111 111111 1111111 111111111111111222211 12223444444556677777777765
Q ss_pred ccccCccchhHHHHHhhhhcCcCccc----cccEEEeecCCcceeEEecCHHHHHHHHhh
Q 011052 296 AFSRGFMSARSVMGFLSDVYPTAADE----IGKIHIIADDRVQGAVFDLPEEIAKELLNK 351 (494)
Q Consensus 296 ~~~~~~~~~~~i~~~i~~~~~~~~~~----ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~ 351 (494)
--++++...+.-+|+.+.+..++. ||+.+++...+++..++.-.+...-.-++.
T Consensus 382 --~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~ 439 (459)
T KOG0326|consen 382 --FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQ 439 (459)
T ss_pred --hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHH
Confidence 355677666666677776655543 677766666666666776666554444444
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.026 Score=59.77 Aligned_cols=106 Identities=14% Similarity=0.212 Sum_probs=63.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hh--hccCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA--ARGLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~--~~GiDip~v 156 (494)
--|||..||++.|-++++-|.+ .+.+-.+-|+..-.. +.-|-..++|||||+ -. .-.++.+++
T Consensus 142 lGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~-----E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~l 216 (758)
T KOG0343|consen 142 LGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKF-----ELERISQMNILVCTPGRLLQHMDENPNFSTSNL 216 (758)
T ss_pred ceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHH-----HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcc
Confidence 4799999999999999999984 356666777765432 222334689999998 11 223444555
Q ss_pred cEEE--------ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh
Q 011052 157 DLII--------HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV 206 (494)
Q Consensus 157 ~~VI--------~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~ 206 (494)
.++| ++++-.+.+..+--+ ..-...++++..+...++.|.+..
T Consensus 217 QmLvLDEADR~LDMGFk~tL~~Ii~~l-------P~~RQTLLFSATqt~svkdLaRLs 267 (758)
T KOG0343|consen 217 QMLVLDEADRMLDMGFKKTLNAIIENL-------PKKRQTLLFSATQTKSVKDLARLS 267 (758)
T ss_pred eEEEeccHHHHHHHhHHHHHHHHHHhC-------ChhheeeeeecccchhHHHHHHhh
Confidence 5555 233333444443332 123344555666666666666653
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.041 Score=57.49 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=48.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~v 156 (494)
..++||++||++.|.++.+.+.. ...+..+.|+....+....+.. ..+|+|+|+-. ...+.+.++
T Consensus 96 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~i 171 (401)
T PTZ00424 96 ACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKA----GVHMVVGTPGRVYDMIDKRHLRVDDL 171 (401)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcC----CCCEEEECcHHHHHHHHhCCcccccc
Confidence 45899999999999999887763 2456667788766544433332 46899999732 234567788
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 172 ~lvVi 176 (401)
T PTZ00424 172 KLFIL 176 (401)
T ss_pred cEEEE
Confidence 87773
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.28 Score=54.19 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=53.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
..+.+||.+|++..+++..+.|.. ++.+..+|++++..++..+++....+.++||++|+.
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 457899999999999888888875 788999999999999999999999999999999974
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.067 Score=59.62 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhccC---ceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTSII---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
..|.++..+++... ..++++||.+|....+.++.+.|+..+ .+..+|+++++.+|.+...+.++|+.+|+|.|-.+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 35666666666543 457799999999999999999999644 58899999999999999999999999999999754
Q ss_pred hccCCCCcccEEEecC
Q 011052 148 ARGLDIPNVDLIIHYE 163 (494)
Q Consensus 148 ~~GiDip~v~~VI~~~ 163 (494)
. -.-+++..+||..+
T Consensus 251 v-FaP~~~LgLIIvdE 265 (665)
T PRK14873 251 V-FAPVEDLGLVAIWD 265 (665)
T ss_pred E-EeccCCCCEEEEEc
Confidence 2 34556777777443
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.092 Score=56.74 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=51.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hh-hccCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VA-ARGLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~-~~GiDip~ 155 (494)
..+.+|.+||++.|-+|.+-+.. ++.|.++-|+.+...-..-|+ +++|+|.|+ +. -+-+|+..
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-----~~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-----QTRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-----hceEEecCchHHHHHHHhcCCCccc
Confidence 45789999999999999888763 467888889877665443333 577999998 22 33478888
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
|++.|.
T Consensus 168 vrlfVL 173 (980)
T KOG4284|consen 168 VRLFVL 173 (980)
T ss_pred eeEEEe
Confidence 887663
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.17 Score=55.20 Aligned_cols=213 Identities=14% Similarity=0.141 Sum_probs=121.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccC-------CCCcccEE
Q 011052 88 GGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL-------DIPNVDLI 159 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~Gi-------Dip~v~~V 159 (494)
.+-+||..|-....+.-.+.|. .++.++.+|+.++.+++..++..+..|.+++|.-+|.--.-- ..+-.-+|
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~v 136 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVA 136 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEE
Confidence 5799999999887765444444 589999999999999999999999999999998777211000 11111223
Q ss_pred E-------ecC--CC---------------------------CChhhHHHHhcccC----CC--CCCceEEEecChh-hH
Q 011052 160 I-------HYE--LP---------------------------NDPETFVHRSGRTG----RA--GKEGTAILMFTSS-QR 196 (494)
Q Consensus 160 I-------~~~--~P---------------------------~~~~~y~qr~GR~g----R~--G~~g~~i~l~~~~-e~ 196 (494)
| +++ +- ...++.++..+=.. +. .++...+.+.... ..
T Consensus 137 IDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~ 216 (590)
T COG0514 137 IDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPS 216 (590)
T ss_pred echHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHH
Confidence 3 221 11 11223333332110 00 0111112222211 11
Q ss_pred HHHHHHHH---H-hCCCceecCCCCHHHHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCC
Q 011052 197 RTVRSLER---D-VGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSR 272 (494)
Q Consensus 197 ~~l~~le~---~-~~~~~~~~~~p~~~~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~ 272 (494)
..+..|.. . .+.-+..+..-...|.+..++...--.....|...-...++..++.+...+...++|+.|-.+|.+.
T Consensus 217 ~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdK 296 (590)
T COG0514 217 DQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDK 296 (590)
T ss_pred HHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCC
Confidence 11222221 1 1112333332223333333333322222334555566677777777777778889999999999988
Q ss_pred CCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCcc
Q 011052 273 PPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAAD 320 (494)
Q Consensus 273 ~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~ 320 (494)
| .+++++-.+. |.++.++.-..++..+|
T Consensus 297 p------------dVRfViH~~l--------P~s~EsYyQE~GRAGRD 324 (590)
T COG0514 297 P------------DVRFVIHYDL--------PGSIESYYQETGRAGRD 324 (590)
T ss_pred C------------CceEEEEecC--------CCCHHHHHHHHhhccCC
Confidence 7 6888888777 88888888877665553
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.85 Score=52.86 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=50.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----------------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh-hcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-ARG 150 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~-~~G 150 (494)
.++|+.+||++.+.+++..|.. .+.+...||+.++.++.+.+.. ..+|||+|+-- ..-
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~----~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK----PPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC----CCCEEEecHHHHHHH
Confidence 4699999999999988765431 3467889999999999887765 67899999832 111
Q ss_pred C-------CCCcccEEEe
Q 011052 151 L-------DIPNVDLIIH 161 (494)
Q Consensus 151 i-------Dip~v~~VI~ 161 (494)
+ .+.++++||.
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 1 3467787773
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.14 Score=58.28 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=52.1
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc------Cceee-ecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI------IASEA-LHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~------~~~~~-lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
+++++++.+||...+.++++.|++. +.+.. +|+.|+.++++.++++|.+|..+|||+|..
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 5689999999999999999999741 33322 999999999999999999999999999974
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.12 Score=54.80 Aligned_cols=182 Identities=19% Similarity=0.254 Sum_probs=113.7
Q ss_pred CcEEEEeecCChHHHHHHHHHcCCCc-EEEecccccc----ccccceEEEE--EEcC-----cccHHHH-HHHHHHHhcc
Q 011052 21 RQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDE----KLAEGIKLYA--ISTT-----ATSKRTI-LSDLITVYAK 87 (494)
Q Consensus 21 ~q~ll~SATlp~~i~~l~~~~l~~p~-~i~~~~~~~~----~~~~~i~~~~--~~~~-----~~~k~~~-L~~ll~~~~~ 87 (494)
+|+|+||+-..+.+..+...++.+-. .|........ .+...+.|.+ +.+. ...+... +..++-.+.+
T Consensus 470 rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k 549 (698)
T KOG2340|consen 470 RQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIK 549 (698)
T ss_pred HHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhhchhhcc
Confidence 59999999998888888888877532 1211100000 0011111111 1111 1122221 1222222222
Q ss_pred --CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech--hhhccCCCCcccEEEec
Q 011052 88 --GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPNVDLIIHY 162 (494)
Q Consensus 88 --~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~--~~~~GiDip~v~~VI~~ 162 (494)
..-+|||.|+--+--.|...+++ .+....+|-=.+...-.++-+-|-.|...||+-|. -.-+--+|..|.-||.|
T Consensus 550 ~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfY 629 (698)
T KOG2340|consen 550 RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFY 629 (698)
T ss_pred cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEe
Confidence 24689999999988888888885 44444455444455555666778889999999997 44577889999999999
Q ss_pred CCCCChhhH---HHHhcccCCCC----CCceEEEecChhhHHHHHHH
Q 011052 163 ELPNDPETF---VHRSGRTGRAG----KEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 163 ~~P~~~~~y---~qr~GR~gR~G----~~g~~i~l~~~~e~~~l~~l 202 (494)
.+|..+.-| +-+.+|+.-.| ..-.|.++|+.-|.-.|..+
T Consensus 630 qpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 630 QPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred cCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 999999877 56777765433 34578888988876555444
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.21 Score=44.54 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHccccCCC-eeEEEechhhhccCCCCc--ccEEEecCCCC
Q 011052 120 DISQHQRERTLNGFRQGK-FTVLVATDVAARGLDIPN--VDLIIHYELPN 166 (494)
Q Consensus 120 ~~~~~~R~~~l~~Fr~g~-~~iLVaT~~~~~GiDip~--v~~VI~~~~P~ 166 (494)
+....+...+++.|++.. ..||++|.-..+|||+|+ ++.||...+|.
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344545677888887643 269999988999999986 46788777663
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.35 Score=46.43 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=3.4
Q ss_pred CceEEEE
Q 011052 470 DRYIFFL 476 (494)
Q Consensus 470 ~~~~~~~ 476 (494)
++.+++-
T Consensus 126 ~~kvEyR 132 (317)
T KOG1596|consen 126 DGKVEYR 132 (317)
T ss_pred CCcEEEE
Confidence 4455543
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.13 Score=62.78 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=53.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
++.++||.+||++.+.++++.+.. .+.+..+||+++..++.++++++++|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999999874 246788999999999999999999999999999983
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.16 Score=56.77 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=73.0
Q ss_pred CcccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 70 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 70 ~~~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
.-..|.++..+++... ..++++||.+|-+....++.+.++. +.++.++|+++++.+|..+..+.++|+.+|+|.|-.
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 3456777776666544 5667999999999999999999986 467899999999999999999999999999999965
Q ss_pred hhccCCCCcccEEE
Q 011052 147 AARGLDIPNVDLII 160 (494)
Q Consensus 147 ~~~GiDip~v~~VI 160 (494)
| --.-++++-+||
T Consensus 306 A-lF~Pf~~LGLII 318 (730)
T COG1198 306 A-LFLPFKNLGLII 318 (730)
T ss_pred h-hcCchhhccEEE
Confidence 3 234456667666
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.13 Score=61.02 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=50.9
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCce---eeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIAS---EALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~---~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
.+.++||.+||++.|.++++.+.. ++.+ ..+||+++..++...++.++++..+|||+|+-
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 457899999999999999998874 2222 35899999999999999999988999999983
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.23 Score=44.32 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=29.9
Q ss_pred HHHHHHccccCCCe---eEEEechh--hhccCCCCc--ccEEEecCCC
Q 011052 125 QRERTLNGFRQGKF---TVLVATDV--AARGLDIPN--VDLIIHYELP 165 (494)
Q Consensus 125 ~R~~~l~~Fr~g~~---~iLVaT~~--~~~GiDip~--v~~VI~~~~P 165 (494)
+..++++.|++..- .||+++.- .++|||+|+ ++.||...+|
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 34567777775432 58888876 899999987 5678877766
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.1 Score=47.70 Aligned_cols=84 Identities=12% Similarity=0.297 Sum_probs=52.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-------CceeeecCCCCHHHHHHHHccccCCCeeEEEech-------hhhccCCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-------VAARGLDI 153 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-------~~~~GiDi 153 (494)
+.-+||.+||++.|.++++.+++- +++..+-|.--..++.+ .|+ .++|||+|+ ---..|++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKAR----LRK-GiNILIgTPGRLvDHLknT~~i~~ 285 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKAR----LRK-GINILIGTPGRLVDHLKNTKSIKF 285 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHH----Hhc-CceEEEcCchHHHHHHhccchhee
Confidence 347899999999999999988752 23333444433333332 233 689999998 22345666
Q ss_pred CcccEEE--------ecCCCCChhhHHHHhc
Q 011052 154 PNVDLII--------HYELPNDPETFVHRSG 176 (494)
Q Consensus 154 p~v~~VI--------~~~~P~~~~~y~qr~G 176 (494)
..+++|| ..++-.++..++-.++
T Consensus 286 s~LRwlVlDEaDrlleLGfekdit~Il~~v~ 316 (708)
T KOG0348|consen 286 SRLRWLVLDEADRLLELGFEKDITQILKAVH 316 (708)
T ss_pred eeeeEEEecchhHHHhccchhhHHHHHHHHh
Confidence 7777777 2444556555554443
|
|
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.065 Score=64.00 Aligned_cols=94 Identities=21% Similarity=0.379 Sum_probs=77.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCC-----------HHHHHHHHccccCCCeeEEEechhhhccCCCCc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS--IIASEALHGDIS-----------QHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~-----------~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~ 155 (494)
-..|+||+.+..+..+.+.+.+ ...+..+.|.+. +..+.+++..|+...+++|++|.++..|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 3569999999999988888874 233333444322 224678999999999999999999999999999
Q ss_pred ccEEEecCCCCChhhHHHHhcccCCCC
Q 011052 156 VDLIIHYELPNDPETFVHRSGRTGRAG 182 (494)
Q Consensus 156 v~~VI~~~~P~~~~~y~qr~GR~gR~G 182 (494)
++.|+.++.|.....|+|..||+-.+.
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999977654
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.3 Score=41.32 Aligned_cols=69 Identities=22% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-CCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-LDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G-iDip~v 156 (494)
..++||.|||++.+.+++..+.. .+.+..+||+.+..+....++ ....|+|+|+. +..+ .+++++
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 45899999999999998887753 366788999998877665555 46789999962 2222 556677
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
+++|
T Consensus 145 ~~lI 148 (203)
T cd00268 145 KYLV 148 (203)
T ss_pred CEEE
Confidence 7766
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.89 E-value=1.7 Score=45.29 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=46.7
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhccC
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGL 151 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~Gi 151 (494)
..++|.+||++.|++++..+.+ .+.+.-+..+|+......++.. ..+|+|+|+ .++.|+
T Consensus 94 ~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d----~pdIvV~TP~~ll~~~~~~~ 164 (569)
T KOG0346|consen 94 PSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD----LPDIVVATPAKLLRHLAAGV 164 (569)
T ss_pred ceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc----CCCeEEeChHHHHHHHhhcc
Confidence 4789999999999999988863 3566777888888877767666 788999998 455565
|
|
| >PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.92 Score=44.40 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=85.9
Q ss_pred cEEEEeecCChHHH------HHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHHHHHHHh-ccCCcEEE
Q 011052 22 QSMLFSATMPSWVK------KLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLITVY-AKGGKTIV 93 (494)
Q Consensus 22 q~ll~SATlp~~i~------~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~-~~~~~~IV 93 (494)
.+-+++-|.+.... +++++|-.. .|.|..+.... .+....+..++..- .+.-|+||
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~----------------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIV 67 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV----------------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIV 67 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH----------------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEE
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc----------------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEE
Confidence 46678888876543 455555432 24444444332 23445566666532 35569999
Q ss_pred EcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC------cccEEEecCCCC
Q 011052 94 FTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP------NVDLIIHYELPN 166 (494)
Q Consensus 94 F~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip------~v~~VI~~~~P~ 166 (494)
+|+...-+-...+.+++ .-.+..+-|.+. +--.++.. ..+|.+.+|...+|-.++ .++..|||.+|.
T Consensus 68 v~q~vpGt~~af~kIkekRpDIl~ia~~~~--EDp~~i~~----~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfpr 141 (275)
T PF12683_consen 68 VSQAVPGTAEAFRKIKEKRPDILLIAGEPH--EDPEVISS----AADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPR 141 (275)
T ss_dssp EE-SS---HHHHHHHHHH-TTSEEEESS----S-HHHHHH----HSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETT
T ss_pred EeCCCcchHHHHHHHHhcCCCeEEEcCCCc--CCHHHHhh----ccCeEeccchhhccHHHHHHHHHcCCceEEEEechh
Confidence 99988887777777774 334555555432 22334444 578999999999999886 456799999998
Q ss_pred ChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCH
Q 011052 167 DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVV 218 (494)
Q Consensus 167 ~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~ 218 (494)
+.. |..-.= .+..++.-.+.++++|.++..|.+
T Consensus 142 hms-~~~l~~------------------Rr~~M~~~C~~lGi~fv~~taPDP 174 (275)
T PF12683_consen 142 HMS-YELLAR------------------RRDIMEEACKDLGIKFVEVTAPDP 174 (275)
T ss_dssp GGG-SHHHHH------------------HHHHHHHHHHHCT--EEEEEE---
T ss_pred hcc-hHHHHH------------------HHHHHHHHHHHcCCeEEEEeCCCC
Confidence 766 322221 245677778888999988776653
|
They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.56 E-value=1.9 Score=45.71 Aligned_cols=71 Identities=30% Similarity=0.352 Sum_probs=58.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc--cC---ceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS--II---ASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~--~~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v 156 (494)
++++|+.+||+-.+.+=++.+.+ ++ .++.+.|..++++|...... .+|+|||| +.+--||+.++
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-----~kVfvaTPQvveNDl~~Grid~~dv 132 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-----KKVFVATPQVVENDLKAGRIDLDDV 132 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-----CCEEEeccHHHHhHHhcCccChHHc
Confidence 34899999999999998888875 33 57899999999999988764 57999997 55556999999
Q ss_pred cEEEecC
Q 011052 157 DLIIHYE 163 (494)
Q Consensus 157 ~~VI~~~ 163 (494)
.++|.-.
T Consensus 133 ~~lifDE 139 (542)
T COG1111 133 SLLIFDE 139 (542)
T ss_pred eEEEech
Confidence 9988433
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.8 Score=38.69 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=49.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHH-HHHHHHccccCCCeeEEEechh------hhccCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQH-QRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~-~R~~~l~~Fr~g~~~iLVaT~~------~~~GiDip~v 156 (494)
.++||.||+++.++++++.+.+ .+.+..+|++.+.. +....+ .+..+|+|+|+. ....+++..+
T Consensus 45 ~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 120 (169)
T PF00270_consen 45 ARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINISRL 120 (169)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGTTE
T ss_pred ceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccccc
Confidence 4999999999999999998874 25678899998855 444444 347889999972 2223466667
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
++||
T Consensus 121 ~~iV 124 (169)
T PF00270_consen 121 SLIV 124 (169)
T ss_dssp SEEE
T ss_pred eeec
Confidence 7666
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.74 Score=50.95 Aligned_cols=109 Identities=20% Similarity=0.289 Sum_probs=87.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-cC------------------ceeeecCCCCHHHHHHHHccccCCC---eeEEEech
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-II------------------ASEALHGDISQHQRERTLNGFRQGK---FTVLVATD 145 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~------------------~~~~lhg~~~~~~R~~~l~~Fr~g~---~~iLVaT~ 145 (494)
+.++|||.......+.|.+.|.+ .+ ...-+.|-.+..+|++.+++|.+.- .-+|++|-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 46889999888888888777763 11 2235778889999999999998632 35788999
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhH
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
...-||++-..+-+|.+|..|++.--.|.+-|+-|.|.+-.|+++-.-.|.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDN 849 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhh
Confidence 999999998888999999999999999999999999988888886444443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.40 E-value=1.3 Score=42.76 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.9
Q ss_pred CCceEEE
Q 011052 469 RDRYIFF 475 (494)
Q Consensus 469 ~~~~~~~ 475 (494)
|-..+|+
T Consensus 89 Rh~GVfi 95 (317)
T KOG1596|consen 89 RHAGVFI 95 (317)
T ss_pred cccceEE
Confidence 3344444
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.96 Score=49.73 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=69.9
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccCC
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLD 152 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~GiD 152 (494)
..++..+..+.++...+||.-.|++-++.+.+ ++.+..+.|.+...+|.+++++..+|.++|+|.|-+ +...++
T Consensus 302 laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~ 381 (677)
T COG1200 302 LAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVE 381 (677)
T ss_pred HHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhccee
Confidence 34455566778999999999999888887764 567999999999999999999999999999999975 556788
Q ss_pred CCcccEEEe
Q 011052 153 IPNVDLIIH 161 (494)
Q Consensus 153 ip~v~~VI~ 161 (494)
+.++-+||.
T Consensus 382 F~~LgLVIi 390 (677)
T COG1200 382 FHNLGLVII 390 (677)
T ss_pred ecceeEEEE
Confidence 888887774
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.14 Score=54.71 Aligned_cols=71 Identities=15% Similarity=0.358 Sum_probs=45.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-------CceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhcc---CC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-------IASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARG---LD 152 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~G---iD 152 (494)
+-+++|..+|++.|.+++....+. +.+..++....+.++...+. ...+++||.|+ ++..+ +|
T Consensus 209 gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~---~~k~dili~TP~ri~~~~~~~~~~id 285 (593)
T KOG0344|consen 209 GLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS---DEKYDILISTPMRIVGLLGLGKLNID 285 (593)
T ss_pred ceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhH---HHHHHHHhcCHHHHHHHhcCCCccch
Confidence 348899999999999999888642 23333444433333222111 23578999998 33443 68
Q ss_pred CCcccEEEe
Q 011052 153 IPNVDLIIH 161 (494)
Q Consensus 153 ip~v~~VI~ 161 (494)
+..|.++|.
T Consensus 286 l~~V~~lV~ 294 (593)
T KOG0344|consen 286 LSKVEWLVV 294 (593)
T ss_pred hheeeeEee
Confidence 888887773
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=89.38 E-value=1 Score=53.55 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=53.9
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCce--eeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhccCCCC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIAS--EALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAARGLDIP 154 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~--~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~GiDip 154 (494)
++.++||.+||++.|.++++.++. .+.+ ...|++++..++.+..+.+.++..+|+|+|+ ... .+...
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~ 200 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKK 200 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hcccc
Confidence 467999999999999999999874 2233 3446667778888888888888899999997 222 33334
Q ss_pred cccEEE
Q 011052 155 NVDLII 160 (494)
Q Consensus 155 ~v~~VI 160 (494)
.+++||
T Consensus 201 ~~~~lV 206 (1176)
T PRK09401 201 KFDFVF 206 (1176)
T ss_pred ccCEEE
Confidence 466665
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.31 E-value=0.28 Score=50.00 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=39.6
Q ss_pred cccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccc-cccEEEeecCCcce
Q 011052 279 LINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQG 335 (494)
Q Consensus 279 l~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~-ig~i~~~~~~~~~g 335 (494)
+...+.|..++++.++. .+++++...+..+++.+.|..++. |-++++..++++.|
T Consensus 306 ~~ef~~gssrvlIttdl--~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg 361 (397)
T KOG0327|consen 306 MREFRSGSSRVLITTDL--LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG 361 (397)
T ss_pred HHHhhcCCceEEeeccc--cccccchhhcceeeeeccccchhhhhhhcccccccCCCc
Confidence 34456788899999998 688999999999999999876654 33444444444444
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.27 E-value=14 Score=42.21 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=52.0
Q ss_pred cEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccC-------CCCcc
Q 011052 90 KTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGL-------DIPNV 156 (494)
Q Consensus 90 ~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~Gi-------Dip~v 156 (494)
.||-.+|-|+....+...|.. ++.+.+-||++++.+|.+..++ ..+|||+|+. ++--+ .+.+|
T Consensus 75 ~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~----PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 75 YALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN----PPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred EEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCC----CCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 677778889888888877762 6888999999999999987776 8899999982 11111 23578
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||-
T Consensus 151 r~VIV 155 (814)
T COG1201 151 RYVIV 155 (814)
T ss_pred cEEEe
Confidence 88883
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=88.77 E-value=4.3 Score=46.44 Aligned_cols=70 Identities=26% Similarity=0.397 Sum_probs=54.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc--C---ceeeecCCCCHHHHHHHHccccCCCeeEEEechh------hhccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~--~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~------~~~GiDip~ 155 (494)
+..++||.|||+..+++.++.+.+. + .+..++|+.+..+|.+.... .+|+|+|+- ...-+++.+
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~~~~~ 131 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRISLED 131 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCCChhh
Confidence 4689999999999999988888752 2 67789999999988776653 579999972 234466777
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 132 ~~liVv 137 (773)
T PRK13766 132 VSLLIF 137 (773)
T ss_pred CcEEEE
Confidence 888774
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.2 Score=54.04 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=54.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----------------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh----
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----------------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV---- 146 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~---- 146 (494)
+.++|+.+|+++.+.++.+.|+. .+.+...||+.++.+|.+.+++ ..+|||+|+.
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~----ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN----PPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC----CCCEEEecHHHHHH
Confidence 35899999999999999887642 3678899999999999887765 6789999983
Q ss_pred -hh-cc-CCCCcccEEEe
Q 011052 147 -AA-RG-LDIPNVDLIIH 161 (494)
Q Consensus 147 -~~-~G-iDip~v~~VI~ 161 (494)
+. +. ..+.+|++||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 22 22 25678888883
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.10 E-value=0.24 Score=55.20 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=93.1
Q ss_pred ccHHHHHHHHHHHhc-cC-CcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCC-e-eEEEechh
Q 011052 72 TSKRTILSDLITVYA-KG-GKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK-F-TVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~-~~-~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~-~-~iLVaT~~ 146 (494)
..|...+.+++.... .. .++|||+.-..-+..+...|.. .+....+-|.|+..+|.+.+..|..+. . -.+++..+
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 344444455554331 11 3999999999988888888774 566777889999999999999998543 2 24578889
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
...|+++-...||+..|+-+++..--|.+-|+.|-|..-.+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999996655544
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=86.71 E-value=19 Score=41.07 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=51.2
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG- 150 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G- 150 (494)
++....++.++|+.+|+++.|.+.++.+++ ++.+..++|+...... .+ +..+|+|||+. ...+
T Consensus 60 il~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l--~~~~IiV~Tpek~~~llr~~~ 132 (737)
T PRK02362 60 MLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----WL--GDNDIIVATSEKVDSLLRNGA 132 (737)
T ss_pred HHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc--CCCCEEEECHHHHHHHHhcCh
Confidence 344444678999999999999999998874 4678889998765431 11 34689999972 2222
Q ss_pred CCCCcccEEEe
Q 011052 151 LDIPNVDLIIH 161 (494)
Q Consensus 151 iDip~v~~VI~ 161 (494)
..+.++.+||.
T Consensus 133 ~~l~~v~lvVi 143 (737)
T PRK02362 133 PWLDDITCVVV 143 (737)
T ss_pred hhhhhcCEEEE
Confidence 23467787773
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=85.94 E-value=2.6 Score=49.23 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=70.5
Q ss_pred cHHHHH-HHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc-----CceeeecCCCCHHHHHHHHccccCCCeeEEEech-
Q 011052 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-----IASEALHGDISQHQRERTLNGFRQGKFTVLVATD- 145 (494)
Q Consensus 73 ~k~~~L-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~- 145 (494)
-|.++. ....+....++++.|.|||.=.|++=++-+++. +.+..|..=.+.+++..+++..++|+++|+|.|-
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 454443 334444556789999999999999998888852 4577888888999999999999999999999995
Q ss_pred hhhccCCCCcccEEE
Q 011052 146 VAARGLDIPNVDLII 160 (494)
Q Consensus 146 ~~~~GiDip~v~~VI 160 (494)
++...|-+.++-+||
T Consensus 707 LL~kdv~FkdLGLlI 721 (1139)
T COG1197 707 LLSKDVKFKDLGLLI 721 (1139)
T ss_pred hhCCCcEEecCCeEE
Confidence 677778888887766
|
|
| >KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.46 E-value=6.3 Score=41.44 Aligned_cols=63 Identities=8% Similarity=0.011 Sum_probs=31.9
Q ss_pred ccchhHHHHHhhhhcCcCccccccEEEee---cCCcceeEEec-CHHHHHHHHhhc--CCCCCceEeeccCCC
Q 011052 301 FMSARSVMGFLSDVYPTAADEIGKIHIIA---DDRVQGAVFDL-PEEIAKELLNKQ--IPPGNTISKITKLPA 367 (494)
Q Consensus 301 ~~~~~~i~~~i~~~~~~~~~~ig~i~~~~---~~~~~gs~~d~-~~~~~~~~~~~~--~~~~~~l~v~~~LP~ 367 (494)
..++.+|..++...+++...-|-....-. .| .|++. +...++..++.. ...+..+.|-++.+.
T Consensus 299 da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~f----gFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 299 DATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCF----GFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred CCCHHHHHHHHhhcccccccceEEeccCCCcCce----EEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 35678888888888877664332222111 22 24433 334445555432 224555655555543
|
|
| >PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases | Back alignment and domain information |
|---|
Probab=84.37 E-value=6.8 Score=38.11 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=65.2
Q ss_pred cCceeeecCCCCHHHHHHHHccccCCC----eeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccC-CCCCCc
Q 011052 111 IIASEALHGDISQHQRERTLNGFRQGK----FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG-RAGKEG 185 (494)
Q Consensus 111 ~~~~~~lhg~~~~~~R~~~l~~Fr~g~----~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~g-R~G~~g 185 (494)
++.+..++++.+... -.|.++. ..|+|.=+.++||+.++++.+.+...-+...+++.||.=--| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 378888887755433 3444443 889999999999999999998888888999999999863344 556667
Q ss_pred eEEEecChhhHHHHHHH
Q 011052 186 TAILMFTSSQRRTVRSL 202 (494)
Q Consensus 186 ~~i~l~~~~e~~~l~~l 202 (494)
.|-++.++.-......+
T Consensus 185 l~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHI 201 (239)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 78888877655555554
|
This domain is found associated with a helicase domain of superfamily type II []. |
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=83.81 E-value=10 Score=44.16 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=47.7
Q ss_pred CcEEEEcCChhhHHHHHHHH-hccCceeeecCCCCHHHHHHHHccccCC--CeeEEEech
Q 011052 89 GKTIVFTQTKRDADEVSLAL-TSIIASEALHGDISQHQRERTLNGFRQG--KFTVLVATD 145 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L-~~~~~~~~lhg~~~~~~R~~~l~~Fr~g--~~~iLVaT~ 145 (494)
+-+||..|-....+.....| ...+++..||++++..+|..+++.+.++ .++||--|+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 34566777777777666666 4589999999999999999999999999 899998888
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=83.69 E-value=2.3 Score=48.60 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=40.9
Q ss_pred CcEEEEc-CChhhHHHHHHHHhc----------------------------cCceeeecCCCCHHHHHHHHccccCCCee
Q 011052 89 GKTIVFT-QTKRDADEVSLALTS----------------------------IIASEALHGDISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 89 ~~~IVF~-~t~~~~~~l~~~L~~----------------------------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 139 (494)
.+.|||| +|++.|+++++.+.+ .+.+..++|+.+.+.+...+.. ...
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~----~p~ 137 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH----RPA 137 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC----CCc
Confidence 4677766 999999998887752 1557888999988777666654 678
Q ss_pred EEEech
Q 011052 140 VLVATD 145 (494)
Q Consensus 140 iLVaT~ 145 (494)
|||+|.
T Consensus 138 IIVgT~ 143 (844)
T TIGR02621 138 VIVGTV 143 (844)
T ss_pred EEEECH
Confidence 999993
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.56 E-value=2.7 Score=44.57 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=53.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHH-HHHHHHccccCCCeeEEEech-------hhhccCCCCc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQH-QRERTLNGFRQGKFTVLVATD-------VAARGLDIPN 155 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~-~R~~~l~~Fr~g~~~iLVaT~-------~~~~GiDip~ 155 (494)
-+|||.+||++.+.+++..+.. ++.|+.+.|.-+-+ +..+....-..-.++|||||+ -.-.++|+..
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~ 295 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKH 295 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhh
Confidence 4899999999999999999874 46677777765544 333344444555789999998 2367888888
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++.|
T Consensus 296 LrfLV 300 (620)
T KOG0350|consen 296 LRFLV 300 (620)
T ss_pred ceEEE
Confidence 88766
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.26 E-value=2 Score=47.95 Aligned_cols=54 Identities=24% Similarity=0.398 Sum_probs=45.9
Q ss_pred HccccCCCeeEEEechhhhccCCCCcccE--------EEecCCCCChhhHHHHhcccCCCCC
Q 011052 130 LNGFRQGKFTVLVATDVAARGLDIPNVDL--------IIHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 130 l~~Fr~g~~~iLVaT~~~~~GiDip~v~~--------VI~~~~P~~~~~y~qr~GR~gR~G~ 183 (494)
-++|.+|+..|-|-+.+++-||-+..-+. -|-..+||+.+.-||..|||.|..+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 35799999999999999999999865443 4457899999999999999999873
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=80.24 E-value=3.6 Score=46.19 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=45.0
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc--------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS--------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~--------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
..+++|-+||++.|.+++..+.+ +..+...+|+++..+... ..+ ...+||+|.-.. -.++.++.+|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t---~~k--~~~Ilv~T~~L~-l~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELINT---NPK--PYGLVFSTHKLT-LNKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhhc---ccC--CCCEEEEeCccc-ccccccCCEE
Confidence 35899999999999998888763 234677899988422221 111 457999995320 1146678887
Q ss_pred Ee
Q 011052 160 IH 161 (494)
Q Consensus 160 I~ 161 (494)
|.
T Consensus 296 VI 297 (675)
T PHA02653 296 II 297 (675)
T ss_pred Ec
Confidence 73
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 494 | ||||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 2e-37 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 7e-34 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 4e-33 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 8e-32 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 1e-31 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 2e-31 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 2e-31 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 2e-31 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 2e-31 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 5e-31 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 1e-29 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 5e-26 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 1e-24 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 3e-24 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 6e-24 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 9e-24 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 1e-23 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 1e-23 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 4e-23 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 6e-22 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 2e-21 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 3e-21 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 4e-20 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 5e-20 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 5e-20 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 7e-20 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 7e-20 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 7e-20 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 7e-20 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 1e-19 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 3e-19 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 4e-19 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 4e-18 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 4e-18 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 4e-18 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 2e-17 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 4e-16 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 9e-16 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 3e-15 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 3e-15 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 3e-15 | ||
| 2rb4_A | 175 | Crystal Structure Of The Helicase Domain Of Human D | 3e-15 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 8e-13 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 2e-12 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 2e-12 | ||
| 1t5i_A | 172 | Crystal Structure Of The C-Terminal Domain Of Uap56 | 1e-11 | ||
| 1wp9_A | 494 | Crystal Structure Of Pyrococcus Furiosus Hef Helica | 7e-09 | ||
| 2v1x_A | 591 | Crystal Structure Of Human Recq-Like Dna Helicase L | 2e-08 | ||
| 1oyy_A | 523 | Structure Of The Recq Catalytic Core Bound To Atp-G | 3e-08 | ||
| 1oyw_A | 523 | Structure Of The Recq Catalytic Core Length = 523 | 7e-08 | ||
| 1gm5_A | 780 | Structure Of Recg Bound To Three-Way Dna Junction L | 9e-07 | ||
| 4gl2_A | 699 | Structural Basis For Dsrna Duplex Backbone Recognit | 3e-06 | ||
| 2eyq_A | 1151 | Crystal Structure Of Escherichia Coli Transcription | 4e-06 | ||
| 2fwr_A | 472 | Structure Of Archaeoglobus Fulgidis Xpb Length = 47 | 1e-05 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 1e-05 | ||
| 2fzl_A | 219 | Structure Of C-Terminal Domain Of Archaeoglobus Ful | 2e-05 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 5e-05 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 6e-05 | ||
| 4i1s_A | 243 | Melanoma Differentiation Associated Protein-5 Helic | 1e-04 | ||
| 2fdc_A | 658 | Structural Basis Of Dna Damage Recognition And Proc | 1e-04 | ||
| 1d9x_A | 658 | Crystal Structure Of The Dna Repair Protein Uvrb Le | 1e-04 | ||
| 1t5l_A | 658 | Crystal Structure Of The Dna Repair Protein Uvrb Po | 1e-04 | ||
| 1d9z_A | 657 | Crystal Structure Of The Dna Repair Protein Uvrb In | 2e-04 | ||
| 3v4r_A | 667 | Crystal Structure Of A Uvrb Dimer-Dna Complex Lengt | 2e-04 | ||
| 2d7d_A | 661 | Structural Insights Into The Cryptic Dna Dependent | 2e-04 | ||
| 3uwx_B | 683 | Crystal Structure Of Uvra-Uvrb Complex Length = 683 | 2e-04 | ||
| 1d2m_A | 665 | Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleot | 3e-04 | ||
| 1c4o_A | 664 | Crystal Structure Of The Dna Nucleotide Excision Re | 3e-04 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 3e-04 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 4e-04 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 5e-04 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 5e-04 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 6e-04 |
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 | Back alignment and structure |
|
| >pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 | Back alignment and structure |
|
| >pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 | Back alignment and structure |
|
| >pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 | Back alignment and structure |
|
| >pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 | Back alignment and structure |
|
| >pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction Length = 780 | Back alignment and structure |
|
| >pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By Mda5 Length = 699 | Back alignment and structure |
|
| >pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair Coupling Factor Length = 1151 | Back alignment and structure |
|
| >pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb Length = 472 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus Xpb Length = 219 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase Domain Complex With Inhibitor Non-structural Protein V Length = 243 | Back alignment and structure |
|
| >pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX Length = 658 | Back alignment and structure |
|
| >pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Length = 658 | Back alignment and structure |
|
| >pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point Mutant Y96a Revealing A Novel Fold For Domain 2 Length = 658 | Back alignment and structure |
|
| >pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In Complex With Atp Length = 657 | Back alignment and structure |
|
| >pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex Length = 667 | Back alignment and structure |
|
| >pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase Activity Of Uvrb Length = 661 | Back alignment and structure |
|
| >pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex Length = 683 | Back alignment and structure |
|
| >pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide Excision Repair Enzyme Length = 665 | Back alignment and structure |
|
| >pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair Enzyme Uvrb From Thermus Thermophilus Length = 664 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 100.0 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.97 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.97 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.97 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.97 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.97 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.97 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.97 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.97 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.96 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.96 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.96 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.96 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.96 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.96 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.96 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.95 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.95 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.95 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.95 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.94 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.94 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.93 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.93 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.88 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.91 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.9 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.9 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.89 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.89 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.88 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.88 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.88 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.87 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.87 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.87 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.87 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.87 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.86 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.86 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.86 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.86 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.86 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.85 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.85 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.85 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.84 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.84 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.84 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.84 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.84 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.83 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.82 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.82 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.81 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.81 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.81 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.81 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.79 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.77 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.75 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.75 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.74 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.73 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.59 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.56 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.51 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.44 | |
| 2e29_A | 92 | ATP-dependent RNA helicase DDX50; ATP binding, hyd | 98.8 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 98.56 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 98.35 | |
| 2g0c_A | 76 | ATP-dependent RNA helicase DBPA; RNA recognition m | 98.03 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 97.75 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 97.55 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 97.45 | |
| 3i31_A | 88 | Heat resistant RNA dependent ATPase; RNA helicase, | 97.4 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 97.0 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 96.97 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 96.57 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 96.28 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 96.2 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 96.19 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 96.07 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 95.99 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 95.58 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 95.56 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 95.45 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 95.06 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 95.05 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 94.91 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 94.9 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 94.75 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 94.61 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 94.38 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 94.34 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 93.87 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 93.69 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 93.47 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 93.4 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 93.31 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 93.26 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 92.5 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 92.06 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 91.7 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 91.42 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 91.37 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 91.21 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 90.94 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 90.11 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 89.37 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 88.96 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 88.68 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 88.64 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 88.11 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 86.37 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 85.11 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 83.81 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 83.4 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 83.33 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 82.74 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 81.61 |
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-44 Score=355.22 Aligned_cols=289 Identities=38% Similarity=0.587 Sum_probs=251.6
Q ss_pred ceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCee
Q 011052 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 61 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 139 (494)
.++|+++.++...|.+.|.++++.+. +.++||||+|++.++.+++.|.. ++.+..+||+|++.+|+++++.|++|.++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 36788999999999999999998874 78999999999999999999975 78999999999999999999999999999
Q ss_pred EEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHH
Q 011052 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVE 219 (494)
Q Consensus 140 iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~ 219 (494)
|||||+++++|+|+|+|++||||++|++.+.|+||+|||||.|++|.|++|+++.+...++.+++.++.+++.+..|+.+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHcCCCCCCCCcccccCCCCceEEEEecCCcccc
Q 011052 220 DVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSR 299 (494)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~ 299 (494)
++.+..+..++..+..+..+....|.+.+++++++..++.+++||+++.+... .++++++..++|+|++++.++ .
T Consensus 161 ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~--~~~~l~~~~~~~~~~~~~~g~---~ 235 (300)
T 3i32_A 161 EVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP--AERSLLTGEEGWRTYKATGPR---L 235 (300)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC--CCBCTTTCCBSCBCEEEECTT---C
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc--CccccccCCCCcEEEEEecCC---C
Confidence 99999999999999988888899999999999999999999999999998766 678999999999999999887 2
Q ss_pred CccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHHHHHhhcCCCCCceEeeccCCCcCCCC
Q 011052 300 GFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIPPGNTISKITKLPALQDDG 372 (494)
Q Consensus 300 ~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~~~~~l~v~~~LP~~~~~~ 372 (494)
.. |++|. .|.+. +. +||+|.+.+.+ +|||+|++.++ ...+++++++++||++++++
T Consensus 236 ~~--~~~~~-~i~~~-~~---~ig~i~~~~~~----~~~dvp~~~~~------~~~~~~~~~~~~~p~~~~~~ 291 (300)
T 3i32_A 236 SL--PRLVA-LLKGQ-GL---EVGKVAEAEGG----FYVDLRPEARP------EVAGLRLEPARRVEGLLEIP 291 (300)
T ss_dssp CH--HHHHH-HHHHT-TC---CCCCEEEETTE----EEECBCSSCCC------CCTTCEEEEC----------
T ss_pred CC--cHHHH-HHHhc-CC---eECcEEEeCCE----EEEEeCHHHcC------cCCCcEEEecccCCCCccCC
Confidence 22 99997 55554 33 89999997655 89999999887 34689999999999999875
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=268.85 Aligned_cols=206 Identities=44% Similarity=0.704 Sum_probs=192.3
Q ss_pred eEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeE
Q 011052 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 62 i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~i 140 (494)
+.+.++.++...|.+.|.+++... +..++||||+|++.++.+++.|.. ++.+..+||+|++.+|.++++.|++|.++|
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 456677788889999999999876 468999999999999999999986 789999999999999999999999999999
Q ss_pred EEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCCCHHH
Q 011052 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVED 220 (494)
Q Consensus 141 LVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p~~~~ 220 (494)
||||+++++|+|+|++++||+|++|++++.|+||+|||||.|+.|.|++|+++.+...++.+++.++.+++....|..++
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~e 164 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEE 164 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHH
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCccchhhhhHHHHHHHhhcCHHHHHHHHHHHc
Q 011052 221 VLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLS 268 (494)
Q Consensus 221 i~~~~~~~~~~~l~~~~~~~~~~f~~~a~~l~~~~~~~~l~aal~~~~ 268 (494)
+.+.....+...+.....+....|.+.+++++++++++.+++|++++.
T Consensus 165 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~ll 212 (212)
T 3eaq_A 165 VLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLL 212 (212)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Confidence 999999999999999887777899999999999999999999999873
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=290.44 Aligned_cols=202 Identities=35% Similarity=0.590 Sum_probs=179.4
Q ss_pred CCCCChHHHHHHHHHhC--CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH
Q 011052 1 MLAVGFEEDVELILENL--PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~l--p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (494)
|+++||.+++..|+..+ ++++|+++||||+|+++..++..++.++..+.+.. .......+.+.++.+....|...|
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~l 292 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGI--VGGACSDVKQTIYEVNKYAKRSKL 292 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESS--TTCCCTTEEEEEEECCGGGHHHHH
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecc--ccccccccceEEEEeCcHHHHHHH
Confidence 68999999999999985 67899999999999999999999999988876542 233456788888888888898888
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
.+++.... .++||||+|++.|+.+++.|.+ ++.+..+||++++.+|++++++|++|+.+|||||+++++|||+|+|+
T Consensus 293 ~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 293 IEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 88887753 4599999999999999999986 78999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChh-hHHHHHHHHHHh
Q 011052 158 LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDV 206 (494)
Q Consensus 158 ~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e~~~l~~le~~~ 206 (494)
+|||||+|.+.++|+||+|||||.|+.|.+++|+++. +...++.+.+.+
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999954 555555555554
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=289.59 Aligned_cols=214 Identities=27% Similarity=0.420 Sum_probs=179.9
Q ss_pred CCCCChHHHHHHHHHhCC-------CCCcEEEEeecCChHHHHHHHHHcCCCcEEEecc--ccccccccceEEEEEEcCc
Q 011052 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG--NQDEKLAEGIKLYAISTTA 71 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp-------~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~--~~~~~~~~~i~~~~~~~~~ 71 (494)
|+++||.++++.|+..++ +++|+++||||+|+.+..++..++.++..+.+.. .........+.+.++....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 578999999999998764 3789999999999999999999999887665432 2233344556666555543
Q ss_pred c--cHHHHHHHHHH---HhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEE
Q 011052 72 T--SKRTILSDLIT---VYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~--~k~~~L~~ll~---~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV 142 (494)
. .+...+..+.. ...+..++||||+|++.|+.+++.|.. ++.+..+||+|++.+|.+++++|++++++|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2 23333333333 224567999999999999999999984 67899999999999999999999999999999
Q ss_pred echhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 143 aT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
||+++++|||+|+|++||+|++|.+++.|+||+|||||+|+.|.|++|+.+.|...++.|++.....+....
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 418 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 418 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999988876544
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=274.47 Aligned_cols=213 Identities=35% Similarity=0.604 Sum_probs=190.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCccc-HHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATS-KRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~ 79 (494)
|++++|...+..|+..++++.|+++||||+|+.+.+++..++.+|..+.+. ........+.+++..+.... |.+.|.
T Consensus 191 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~k~~~l~ 268 (410)
T 2j0s_A 191 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK--RDELTLEGIKQFFVAVEREEWKFDTLC 268 (410)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC--GGGCSCTTEEEEEEEESSTTHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEec--CccccCCCceEEEEEeCcHHhHHHHHH
Confidence 578899999999999999999999999999999999988899888877543 22334556777776665544 888888
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL 158 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~ 158 (494)
.++... ...++||||++++.++.+++.|.. ++.+..+||+|++.+|.+++++|++++.+|||||+++++|+|+|++++
T Consensus 269 ~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 269 DLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp HHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 888776 457999999999999999999986 788999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011052 159 IIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 159 VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (494)
||+|++|++.+.|+||+||+||.|++|.|++|+++.+...++.++++++.+++.++..
T Consensus 348 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (410)
T 2j0s_A 348 IINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMN 405 (410)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccc
Confidence 9999999999999999999999999999999999999999999999999998887654
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=281.88 Aligned_cols=214 Identities=27% Similarity=0.423 Sum_probs=178.8
Q ss_pred CCCCChHHHHHHHHHhCC-------CCCcEEEEeecCChHHHHHHHHHcCCCcEEEec--cccccccccceEEEEEEcCc
Q 011052 1 MLAVGFEEDVELILENLP-------PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV--GNQDEKLAEGIKLYAISTTA 71 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp-------~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~--~~~~~~~~~~i~~~~~~~~~ 71 (494)
|+++||.++++.|+..++ +++|+++||||+|+.+..++..++.++..+.+. ..........+.+.++....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 578999999999988763 378999999999999999999999887765443 22223344556666555543
Q ss_pred c-cH-HHHHHHHH---HHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEE
Q 011052 72 T-SK-RTILSDLI---TVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~-~k-~~~L~~ll---~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV 142 (494)
. .+ ...+..+. ....+..++||||+|++.|+.+++.|.. ++.+..+||+|++.+|.++++.|++++++|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2 22 23333333 3324567999999999999999999984 67899999999999999999999999999999
Q ss_pred echhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 143 ATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 143 aT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
||+++++|||+|+|++||+|++|.+++.|+||+|||||.|+.|.|++|+.+.|...++.|++..+..++...
T Consensus 398 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~~~~ 469 (563)
T 3i5x_A 398 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQE 469 (563)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCCEEE
T ss_pred EcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999888776544
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=268.78 Aligned_cols=205 Identities=40% Similarity=0.605 Sum_probs=179.9
Q ss_pred CCCCChHHHHHHHHHh--CCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH
Q 011052 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT 76 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~--lp~--~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~ 76 (494)
|++++|..++..|+.. ++. .+|+++||||+|+.+..++..++.++..+.+.. .......+.+.++.+....|..
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~ 264 (417)
T 2i4i_A 187 MLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--VGSTSENITQKVVWVEESDKRS 264 (417)
T ss_dssp HHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------CCSSEEEEEEECCGGGHHH
T ss_pred hhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--CCCCccCceEEEEEeccHhHHH
Confidence 3567899999999985 443 689999999999999999999999887776532 2334567888888888888999
Q ss_pred HHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCc
Q 011052 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN 155 (494)
Q Consensus 77 ~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~ 155 (494)
.|.+++.......++||||+|++.++.+++.|.+ ++.+..+||+|++.+|.+++++|++++.+|||||+++++|+|+|+
T Consensus 265 ~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~ 344 (417)
T 2i4i_A 265 FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISN 344 (417)
T ss_dssp HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCC
T ss_pred HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 9999988876678999999999999999999986 789999999999999999999999999999999999999999999
Q ss_pred ccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 156 VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 156 v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
+++||+|++|.+...|+||+||+||.|+.|.|++|+++.+...++.+++.+.
T Consensus 345 v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~ 396 (417)
T 2i4i_A 345 VKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 396 (417)
T ss_dssp EEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred CCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888888877654
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=262.09 Aligned_cols=210 Identities=31% Similarity=0.533 Sum_probs=190.6
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHH
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 81 (494)
++.+|...++.|+..+++..|+++||||+|..+..+...++.+|..+.+.. ......+.+++..+....|...+..+
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~k~~~l~~~ 252 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME---ELTLKGITQYYAFVEERQKLHCLNTL 252 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS---SCBCTTEEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc---ccccCCceeEEEEechhhHHHHHHHH
Confidence 456788999999999999999999999999999999999999887775542 23456677888888888888888888
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
+... ...++||||++++.++.+++.|.. ++.+..+||+|++.+|..+++.|++++.+|||||+++++|+|+|++++||
T Consensus 253 ~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 253 FSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred Hhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 8775 567999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011052 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (494)
+|++|.+...|+||+||+||.|+.|.|++|+++.|...++.+++.++.+++.++.
T Consensus 332 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 332 NFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp ESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred EeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999887654
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=261.59 Aligned_cols=215 Identities=31% Similarity=0.480 Sum_probs=184.0
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (494)
.+|...+..++..++.++|+++||||+|+.+..++..++.++..+.+.. .......+.+.++.+.. ..+...+..++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (412)
T 3fht_A 184 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 261 (412)
T ss_dssp TTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG--GGSSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc--ccccccCceEEEEEcCChHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999988776542 33345667776666554 46777777777
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
... ...++||||++++.|+.+++.|.. ++.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++||+
T Consensus 262 ~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 340 (412)
T 3fht_A 262 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 340 (412)
T ss_dssp HHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE
T ss_pred hhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE
Confidence 765 458999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhcccCCCCCCceEEEecChhh-HHHHHHHHHHhCCCceecCCCCHHHH
Q 011052 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVEDV 221 (494)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~G~~g~~i~l~~~~e-~~~l~~le~~~~~~~~~~~~p~~~~i 221 (494)
|++|. +...|+||+||+||.|+.|.|++++++.+ ...++.+++.++.+++....+..+++
T Consensus 341 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 341 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp SSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred ECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 99994 67899999999999999999999998765 78999999999999988876655443
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=267.86 Aligned_cols=211 Identities=34% Similarity=0.578 Sum_probs=173.1
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc-cHHHHHHH
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~L~~ 80 (494)
++.+|...+..++..++++.|+++||||+|..+..+++.++.++..+.+.. .......+.+.++..... .+...+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK--EELTLEGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCC--CCCCTTSCCEEEEECSSSTTHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecC--CccCCCCceEEEEEeChHHhHHHHHHH
Confidence 467899999999999999999999999999999999999999887765432 233345566666665544 48888888
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
++... ...++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++|
T Consensus 274 ~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~V 352 (414)
T 3eiq_A 274 LYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352 (414)
T ss_dssp HHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCE
T ss_pred HHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEE
Confidence 88765 457999999999999999999986 7899999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (494)
|+|++|.+...|+||+||+||.|++|.|++|+++.+...++.+++.++..++.++.
T Consensus 353 i~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (414)
T 3eiq_A 353 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPL 408 (414)
T ss_dssp EESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC
T ss_pred EEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccCh
Confidence 99999999999999999999999999999999999999999999999998887754
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-29 Score=256.16 Aligned_cols=210 Identities=24% Similarity=0.465 Sum_probs=188.0
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLIT 83 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~ 83 (494)
++|...+..++..++...|+++||||+|+.+..++..++.+|..+.+.. ........+.+++..+....|...+..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD-ETKLTLHGLQQYYVKLKDNEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCC-CCCCCCTTCEEEEEECCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecC-ccccCcccceEEEEEcCchhHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999988776542 222334567788888888889988888887
Q ss_pred HhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEec
Q 011052 84 VYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHY 162 (494)
Q Consensus 84 ~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~ 162 (494)
.. +..++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++||+|
T Consensus 247 ~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~ 325 (391)
T 1xti_A 247 VL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 325 (391)
T ss_dssp HS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES
T ss_pred hc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe
Confidence 76 568999999999999999999986 7889999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHhcccCCCCCCceEEEecChh-hHHHHHHHHHHhCCCceecCC
Q 011052 163 ELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 163 ~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~~~~~ 215 (494)
++|++...|+||+||+||.|+.|.|++++++. +...++.+++.++.+++.++.
T Consensus 326 ~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 326 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred CCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 99999999999999999999999999999876 556789999998888877654
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=250.23 Aligned_cols=216 Identities=31% Similarity=0.538 Sum_probs=186.2
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (494)
.+|...+..++..++++.|+++||||+|+.+..+++.++.++..+.+.. .......+.+.+..+.. ..+...+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 161 QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQT--NEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp TTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCG--GGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccc--cccccccccEEEEEcCchHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998888776542 23334556666666543 45677777766
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
... ...++||||++++.|+.+++.|.. ++.+..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+
T Consensus 239 ~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~ 317 (395)
T 3pey_A 239 GLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN 317 (395)
T ss_dssp TTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE
T ss_pred Hhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE
Confidence 654 568999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhcccCCCCCCceEEEecCh-hhHHHHHHHHHHhC-CCceecCCCCHHHHH
Q 011052 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTS-SQRRTVRSLERDVG-CKFEFVSPPVVEDVL 222 (494)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~G~~g~~i~l~~~-~e~~~l~~le~~~~-~~~~~~~~p~~~~i~ 222 (494)
|++|. ++..|+||+||+||.|+.|.+++++.+ .+...++.+++.++ .++..++.+..+++.
T Consensus 318 ~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 386 (395)
T 3pey_A 318 YDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPTDDWDEVE 386 (395)
T ss_dssp SSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCSSCHHHHH
T ss_pred cCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCChHHHHHHH
Confidence 99999 999999999999999999999999985 45668889999888 777777776665543
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=252.20 Aligned_cols=205 Identities=36% Similarity=0.599 Sum_probs=184.9
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHH
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 81 (494)
++.+|...+..++..++++.|+++||||+|..+..+++.++.++..+... ....+.+.++.+....+.+.+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 160 LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK------INANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC------SSSSSEEEEEECCGGGHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec------CCCCceEEEEEeChHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999887666432 234567777778888888888777
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII 160 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI 160 (494)
+. ....++||||++++.++.+++.|.. ++.+..+||++++.+|.++++.|++++.+|||||+++++|+|+|++++||
T Consensus 234 l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 234 LK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp HC--STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred Hh--cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 75 3567999999999999999999986 78999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 161 ~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
++++|.++.+|+||+||+||.|++|.+++++++.|...++.+++.++.+++.+.
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999999999999999999998887653
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=225.26 Aligned_cols=156 Identities=34% Similarity=0.609 Sum_probs=146.9
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCC
Q 011052 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG 136 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g 136 (494)
...+++|+++.++..+|.+.|.+++... +..++||||+|++.++.+++.|.. ++.+..+||+|++.+|..++++|+++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4567899999999999999999999876 567999999999999999999986 78999999999999999999999999
Q ss_pred CeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 137 ~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|++|.+++|+++.+...++.+++.++.++++++
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998887653
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.7e-29 Score=227.83 Aligned_cols=161 Identities=28% Similarity=0.502 Sum_probs=145.0
Q ss_pred cccceEEEEEEcCccc-HHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccC
Q 011052 58 LAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 135 (494)
+..+++|+++.++..+ |.+.|..++... +..++||||++++.|+.++..|.. ++.+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4567899999888765 999998888765 567999999999999999999986 7899999999999999999999999
Q ss_pred CCeeEEEechhhhccCCCCcccEEEecCCC------CChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCC
Q 011052 136 GKFTVLVATDVAARGLDIPNVDLIIHYELP------NDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 136 g~~~iLVaT~~~~~GiDip~v~~VI~~~~P------~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (494)
++++|||||+++++|+|+|++++||+||+| .+.++|+||+||+||.|+.|.+++|+++.+...++.+++.++.+
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ceecCCCCHH
Q 011052 210 FEFVSPPVVE 219 (494)
Q Consensus 210 ~~~~~~p~~~ 219 (494)
++.++.+..+
T Consensus 163 ~~~~~~~~~~ 172 (175)
T 2rb4_A 163 IKQLNAEDMD 172 (175)
T ss_dssp CEEECSSCCC
T ss_pred ccccCCchhc
Confidence 9888776544
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-30 Score=274.86 Aligned_cols=213 Identities=31% Similarity=0.476 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCc-ccHHHHHHHHH
Q 011052 4 VGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTA-TSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll 82 (494)
.+|...+..|++.++.++|+++||||+|..+..++..++.+|..+.+.. .......+.+.++.+.. ..+...|..++
T Consensus 251 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 328 (479)
T 3fmp_B 251 QGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--EEETLDTIKQYYVLCSSRDEKFQALCNLY 328 (479)
T ss_dssp TTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------------
T ss_pred CCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccc--cccCcCCceEEEEEeCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999988887643 22334556666555543 45667777766
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
... ...++||||+|++.|+.+++.|.. ++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 329 ~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 329 GAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 654 457999999999999999999986 788999999999999999999999999999999999999999999999999
Q ss_pred cCCCC------ChhhHHHHhcccCCCCCCceEEEecChhh-HHHHHHHHHHhCCCceecCCCCHH
Q 011052 162 YELPN------DPETFVHRSGRTGRAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPVVE 219 (494)
Q Consensus 162 ~~~P~------~~~~y~qr~GR~gR~G~~g~~i~l~~~~e-~~~l~~le~~~~~~~~~~~~p~~~ 219 (494)
||+|. +...|+||+|||||.|+.|.|++|+++.+ ...++.+++.++.+++.+.....+
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 472 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472 (479)
T ss_dssp -----------------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCccHH
Confidence 99995 66899999999999999999999998765 778888988888777766544433
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=224.21 Aligned_cols=156 Identities=23% Similarity=0.451 Sum_probs=143.6
Q ss_pred ccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCC
Q 011052 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 59 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 137 (494)
..+++|+++.++...|.+.|.++++.. +..++||||++++.++.+++.|.. ++.+..+||+|++.+|..+++.|++++
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 457889999999999999999999876 567999999999999999999986 789999999999999999999999999
Q ss_pred eeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChh-hHHHHHHHHHHhCCCceecCC
Q 011052 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 138 ~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~~~~~ 215 (494)
++|||||+++++|+|+|++++||+||+|++++.|+||+||+||.|+.|.+++|+++. +...++.+++.++.+++.++.
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 999999999999999999999999999999999999999999999999999999876 567899999999988877643
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=230.08 Aligned_cols=166 Identities=27% Similarity=0.405 Sum_probs=131.9
Q ss_pred HHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceee
Q 011052 38 SRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEA 116 (494)
Q Consensus 38 ~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~ 116 (494)
..+||++|..|.+.. ......++.++++.++...|.+.|.+++... ..++||||+|++.++.+++.|.. ++.+..
T Consensus 8 ~~~~~~~p~~i~v~~--~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 8 SSGVDLGTENLYFQS--MGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp ----------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred cccccCCCEEEEECC--CCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 356899999887642 3345678999999999999999998888653 46899999999999999999985 789999
Q ss_pred ecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChh-h
Q 011052 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-Q 195 (494)
Q Consensus 117 lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e 195 (494)
+||+|++.+|.+++++|++++++|||||+++++|+|+|++++||+||+|++++.|+||+||+||.|++|.+++|+++. +
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~ 163 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACD 163 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSC
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred HHHHHHHHHHhC
Q 011052 196 RRTVRSLERDVG 207 (494)
Q Consensus 196 ~~~l~~le~~~~ 207 (494)
...++.|++.+.
T Consensus 164 ~~~~~~l~~~l~ 175 (191)
T 2p6n_A 164 ESVLMDLKALLL 175 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777776654
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-28 Score=220.96 Aligned_cols=156 Identities=31% Similarity=0.584 Sum_probs=139.4
Q ss_pred cceEEEEEEcCccc-HHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCC
Q 011052 60 EGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGK 137 (494)
Q Consensus 60 ~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~ 137 (494)
.+++|+++.++..+ |.+.|.+++... +..++||||+|++.++.+++.|.. ++.+..+||+|++.+|.++++.|++++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 35778888887777 999999999876 568999999999999999999986 788999999999999999999999999
Q ss_pred eeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011052 138 FTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 138 ~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (494)
++|||||+++++|+|+|++++||+||+|++++.|+||+||+||.|+.|.+++|+++.+...++.+++.++.+++.++..
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888877654
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-29 Score=260.55 Aligned_cols=211 Identities=34% Similarity=0.589 Sum_probs=45.0
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc-cHHHHHHH
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT-SKRTILSD 80 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~-~k~~~L~~ 80 (494)
++.+|...+..++..+++..|+++||||+|+.+..+...++.+|..+.+.. .......+.++++.+... .+...+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK--DELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecC--ccccCCCceEEEEEcCchhhHHHHHHH
Confidence 356889999999999999999999999999999999999999988776542 222334555555544443 36677777
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
+++.. ...++||||++++.++.+++.|.. ++.+..+||+|++.+|.++++.|++++.+|||||+++++|+|+|++++|
T Consensus 253 ~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~V 331 (394)
T 1fuu_A 253 LYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEE
Confidence 77654 457999999999999999999986 7889999999999999999999999999999999999999999999999
Q ss_pred EecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011052 160 IHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 160 I~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (494)
|+|++|.++..|+||+||+||.|++|.|++++++.+...++.+++.++.+++.++.
T Consensus 332 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 387 (394)
T 1fuu_A 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 387 (394)
T ss_dssp --------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCc
Confidence 99999999999999999999999999999999999999999999988887766543
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-28 Score=223.77 Aligned_cols=153 Identities=40% Similarity=0.564 Sum_probs=127.8
Q ss_pred ccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccC
Q 011052 57 KLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ 135 (494)
Q Consensus 57 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~ 135 (494)
....+++++++.++..+|.+.|.+++....+..++||||+|++.++.+++.|.. ++.+..+||+|++.+|.+++++|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 446789999999999999999999998876678999999999999999999986 7899999999999999999999999
Q ss_pred CCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCC
Q 011052 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 136 g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~ 209 (494)
++++|||||+++++|+|+|++++||+||+|+++++|+||+||+||.|++|.+++|+++.+...++.+++.+...
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~ 168 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEA 168 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHT
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999988888888776543
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=255.18 Aligned_cols=198 Identities=21% Similarity=0.305 Sum_probs=157.7
Q ss_pred CCCCC--hHHHHHH--HHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHH-
Q 011052 1 MLAVG--FEEDVEL--ILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKR- 75 (494)
Q Consensus 1 mL~~G--F~~~i~~--Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~- 75 (494)
|+++| |++++.. ++....++.|+++||||+++.+...+..++..+..+.+... ....++.+.... ....+.
T Consensus 177 is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~~-~~~~~~~ 252 (591)
T 2v1x_A 177 CSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---FNRPNLYYEVRQ-KPSNTED 252 (591)
T ss_dssp GSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---CCCTTEEEEEEE-CCSSHHH
T ss_pred ccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---CCCcccEEEEEe-CCCcHHH
Confidence 34566 7777655 44444557999999999999998888888876654433321 112334333322 222333
Q ss_pred --HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCC
Q 011052 76 --TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (494)
Q Consensus 76 --~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiD 152 (494)
+.|..++....++.++||||+|++.|+.+++.|.. ++.+..+||+|++.+|.+++++|++++++|||||+++++|||
T Consensus 253 ~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID 332 (591)
T 2v1x_A 253 FIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGID 332 (591)
T ss_dssp HHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCC
T ss_pred HHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCC
Confidence 33444443333568999999999999999999986 789999999999999999999999999999999999999999
Q ss_pred CCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 153 ip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
+|+|++||||++|.+++.|+||+||+||.|.+|.|++|+.+.|...+..+
T Consensus 333 ~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 333 KPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred cccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887766655
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-27 Score=234.20 Aligned_cols=194 Identities=28% Similarity=0.540 Sum_probs=163.3
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHH
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDL 81 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 81 (494)
++.+|..++..++..++...|+++||||+|+.+.+....++.++..+... .....+.+.++......+.. + ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~-~~ 214 (337)
T 2z0m_A 142 FEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----IGLANVEHKFVHVKDDWRSK-V-QA 214 (337)
T ss_dssp HHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----GGGGGEEEEEEECSSSSHHH-H-HH
T ss_pred hccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----cccCCceEEEEEeChHHHHH-H-HH
Confidence 35688999999999999999999999999999999999999888766432 22345666666665543332 2 33
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
+.. ....++||||++++.++.+++.|. .+..+||+|++.+|.+++++|++++.+|||||+++++|+|+|++++||+
T Consensus 215 ~~~-~~~~~~lvf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 215 LRE-NKDKGVIVFVRTRNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp HHT-CCCSSEEEECSCHHHHHHHHTTCT---TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE
T ss_pred HHh-CCCCcEEEEEcCHHHHHHHHHHhh---hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE
Confidence 333 356899999999999999998887 5788999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhC
Q 011052 162 YELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVG 207 (494)
Q Consensus 162 ~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~ 207 (494)
|++|.++..|+||+||+||.|+.|.+++++. .|...++.+++.++
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999 88888888876654
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=237.98 Aligned_cols=194 Identities=20% Similarity=0.364 Sum_probs=154.8
Q ss_pred CCCC--hHHHHHH---HHHhCCCCCcEEEEeecCChHHHHHHHHHc--CCCcEEEeccccccccccceEEEEEEcCcccH
Q 011052 2 LAVG--FEEDVEL---ILENLPPKRQSMLFSATMPSWVKKLSRKYL--DNPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 2 L~~G--F~~~i~~---Il~~lp~~~q~ll~SATlp~~i~~l~~~~l--~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
.+.| |+.++.. ++..+| +.|++++|||+++.+...+...+ .+|..+ +.. . ...++.+.. .....+
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~--~--~r~~l~~~v--~~~~~~ 223 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--F--DRPNIRYML--MEKFKP 223 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC--C--CCTTEEEEE--EECSSH
T ss_pred CcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC--C--CCCceEEEE--EeCCCH
Confidence 3455 6666544 455554 68999999999988766444444 344332 221 1 123343322 233456
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCC
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDI 153 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDi 153 (494)
.+.|.+++... ++.++||||+|++.|+.+++.|.. ++.+..+||+|++.+|.+++++|++++.+|||||+++++|||+
T Consensus 224 ~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~ 302 (523)
T 1oyw_A 224 LDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302 (523)
T ss_dssp HHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCC
T ss_pred HHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCc
Confidence 66677777654 567999999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred CcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 154 PNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 154 p~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
|+|++||||++|.+++.|+||+||+||.|.++.|++++++.|...++.+..
T Consensus 303 p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred cCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999887776644
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-26 Score=237.16 Aligned_cols=193 Identities=22% Similarity=0.383 Sum_probs=154.6
Q ss_pred CCC-CChHHH-HHHHHHhCC-----------CCCcEEEEeec-CChHHH-HHHHHHcCCCcEEEeccccccccccceEEE
Q 011052 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVK-KLSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (494)
Q Consensus 1 mL~-~GF~~~-i~~Il~~lp-----------~~~q~ll~SAT-lp~~i~-~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~ 65 (494)
||+ +||.++ +..|+..+| .+.|+++|||| +|..+. .+.+.++. +.+. .......++.+.
T Consensus 161 ~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~i~~~ 234 (414)
T 3oiy_A 161 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 234 (414)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSS--CCCCCCCSEEEE
T ss_pred HHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcC--ccccccccchhe
Confidence 456 999999 899999887 88999999999 676654 33343433 1111 223345567777
Q ss_pred EEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCcee-eecCCCCHHHHHHHHccccCCCeeEEEe
Q 011052 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 66 ~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~-~lhg~~~~~~R~~~l~~Fr~g~~~iLVa 143 (494)
++.+ ++.+.|..++... +.++||||+|++.|+.+++.|.. ++.+. .+||+ +|+ +++|++|+++||||
T Consensus 235 ~~~~---~~~~~l~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 235 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp EESS---CCHHHHHHHHHHH--CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eecc---CHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 6655 4566677777764 48999999999999999999986 78888 99995 444 99999999999999
Q ss_pred ----chhhhccCCCCc-ccEEEecCCC--CChhhHHHHhcccCCCC----CCceEEEecChhhHHHHHHHHHHhC--CCc
Q 011052 144 ----TDVAARGLDIPN-VDLIIHYELP--NDPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG--CKF 210 (494)
Q Consensus 144 ----T~~~~~GiDip~-v~~VI~~~~P--~~~~~y~qr~GR~gR~G----~~g~~i~l~~~~e~~~l~~le~~~~--~~~ 210 (494)
|+++++|+|+|+ |++||+|++| .++.+|+||+|||||.| ++|.+++|+ .+...++.+++.++ .++
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~ 381 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEE 381 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCC
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccc
Confidence 999999999999 9999999999 99999999999999987 589999999 56677788887776 444
Q ss_pred ee
Q 011052 211 EF 212 (494)
Q Consensus 211 ~~ 212 (494)
+.
T Consensus 382 ~~ 383 (414)
T 3oiy_A 382 EI 383 (414)
T ss_dssp CE
T ss_pred cc
Confidence 43
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-28 Score=221.25 Aligned_cols=153 Identities=29% Similarity=0.506 Sum_probs=139.6
Q ss_pred ceEEEEEEcCc-ccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCe
Q 011052 61 GIKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (494)
Q Consensus 61 ~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~ 138 (494)
++.|+++.++. ..|.+.|.+++... +..++||||++++.++.+++.|.. ++.+..+||+|++.+|..++++|+++++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 46677777777 78999998888764 457999999999999999999986 7889999999999999999999999999
Q ss_pred eEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 139 ~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++++++.+...++.+++.++.+++...
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999999988877765543
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-25 Score=246.10 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=111.8
Q ss_pred EcCcccHHHHHHHHHHH-hccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 68 ~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+...+|...|..++.. +..+.++||||+|++.++.|+..|.. ++++.+|||++.+.++..+.++|+.+ .|+||||
T Consensus 411 ~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATd 488 (844)
T 1tf5_A 411 YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATN 488 (844)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCC
Confidence 34556788777776654 34567999999999999999999986 89999999999999988888888876 5999999
Q ss_pred hhhccCCCC--------cccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 146 VAARGLDIP--------NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 146 ~~~~GiDip--------~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
+|+||+||+ ++.|||||++|.+.+.|+||+|||||+|++|.+++|++..|
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999 78899999999999999999999999999999999998766
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-24 Score=237.42 Aligned_cols=177 Identities=16% Similarity=0.355 Sum_probs=140.3
Q ss_pred HHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHH-HHHHHHHHh--c
Q 011052 10 VELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRT-ILSDLITVY--A 86 (494)
Q Consensus 10 i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~--~ 86 (494)
+..|+... ++.|+++||||++.+ .+ ..++.++..+.+... ...++++|...+..++.+ .+..++..+ .
T Consensus 231 l~~l~~~~-~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr-----~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~ 301 (773)
T 2xau_A 231 LKQVVKRR-PDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGR-----TYPVELYYTPEFQRDYLDSAIRTVLQIHATE 301 (773)
T ss_dssp HHHHHHHC-TTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCC-----CCCEEEECCSSCCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhC-CCceEEEEeccccHH--HH-HHHhcCCCcccccCc-----ccceEEEEecCCchhHHHHHHHHHHHHHHhc
Confidence 44455444 478999999999743 34 346666665654322 134666666655555443 333443332 2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc------------cCceeeecCCCCHHHHHHHHcccc-----CCCeeEEEechhhhc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS------------IIASEALHGDISQHQRERTLNGFR-----QGKFTVLVATDVAAR 149 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~------------~~~~~~lhg~~~~~~R~~~l~~Fr-----~g~~~iLVaT~~~~~ 149 (494)
..+++||||+++++++.+++.|.+ .+.+..+||+|++.+|.++++.|+ +|..+|||||+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 468999999999999999999873 467999999999999999999999 999999999999999
Q ss_pred cCCCCcccEEEecCC------------------CCChhhHHHHhcccCCCCCCceEEEecChhhH
Q 011052 150 GLDIPNVDLIIHYEL------------------PNDPETFVHRSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 150 GiDip~v~~VI~~~~------------------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
|||+|+|++||++++ |.+.++|+||+|||||. .+|.|++|+++.+.
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999888 89999999999999999 79999999988764
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-24 Score=243.64 Aligned_cols=205 Identities=20% Similarity=0.348 Sum_probs=157.5
Q ss_pred CCC-CChHHH-HHHHHHhCC-----------CCCcEEEEeec-CChHHHH-HHHHHcCCCcEEEeccccccccccceEEE
Q 011052 1 MLA-VGFEED-VELILENLP-----------PKRQSMLFSAT-MPSWVKK-LSRKYLDNPLNIDLVGNQDEKLAEGIKLY 65 (494)
Q Consensus 1 mL~-~GF~~~-i~~Il~~lp-----------~~~q~ll~SAT-lp~~i~~-l~~~~l~~p~~i~~~~~~~~~~~~~i~~~ 65 (494)
||+ +||.++ ++.|++.+| .++|+++|||| .|..+.. +.+.++. +.+. .......++.+.
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~--~~~~~~~~i~~~ 291 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVG--RLVSVARNITHV 291 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCC--BCCCCCCCEEEE
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEec--cCCCCcCCceeE
Confidence 466 999999 999999888 88999999999 6766553 3333332 2222 223345667777
Q ss_pred EEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCcee-eecCCCCHHHHHHHHccccCCCeeEEEe
Q 011052 66 AISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASE-ALHGDISQHQRERTLNGFRQGKFTVLVA 143 (494)
Q Consensus 66 ~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~-~lhg~~~~~~R~~~l~~Fr~g~~~iLVa 143 (494)
++.+ ++...|..++... +.++||||+|++.|+.+++.|.. ++.+. .+||+ |.+ +++|++|+++||||
T Consensus 292 ~~~~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 292 RISS---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp EESC---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEE
T ss_pred EEec---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEE
Confidence 7665 4666677777764 48999999999999999999986 78898 99993 555 99999999999999
Q ss_pred ----chhhhccCCCCc-ccEEEecCCCC----------------------------------------------------
Q 011052 144 ----TDVAARGLDIPN-VDLIIHYELPN---------------------------------------------------- 166 (494)
Q Consensus 144 ----T~~~~~GiDip~-v~~VI~~~~P~---------------------------------------------------- 166 (494)
|+++++|||+|+ |++|||||+|.
T Consensus 361 tas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 361 VQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp ETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred ecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999999998
Q ss_pred --------------------ChhhHHHHhcccCCCC----CCceEEEecChhhHHHHHHHHHHhC----CCceecCCCCH
Q 011052 167 --------------------DPETFVHRSGRTGRAG----KEGTAILMFTSSQRRTVRSLERDVG----CKFEFVSPPVV 218 (494)
Q Consensus 167 --------------------~~~~y~qr~GR~gR~G----~~g~~i~l~~~~e~~~l~~le~~~~----~~~~~~~~p~~ 218 (494)
|+.+|+||+|||||.+ ..|.+++++ .|...++.|++.+. .++..+.....
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~ 518 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANW 518 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCH
Confidence 8889999999999965 356777777 55666777766653 44444444445
Q ss_pred HHHHHH
Q 011052 219 EDVLES 224 (494)
Q Consensus 219 ~~i~~~ 224 (494)
+++++.
T Consensus 519 ~~~~~~ 524 (1104)
T 4ddu_A 519 KELVHE 524 (1104)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-24 Score=233.34 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=141.7
Q ss_pred CCCChHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHH
Q 011052 2 LAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSD 80 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 80 (494)
++++|..++..|++.++ +++|+++||||+|..+..++. .++..+.+.... +......++..
T Consensus 289 ~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~---------------~~~~~~~ll~~ 350 (618)
T 2whx_A 289 TDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI---------------PERSWNTGFDW 350 (618)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC---------------CSSCCSSSCHH
T ss_pred CCccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC---------------CHHHHHHHHHH
Confidence 47889999999998886 689999999999987554332 244444332110 11111112222
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEE
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLI 159 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~V 159 (494)
+. . ...++||||+|++.|+.+++.|.+ ++.+..+||+ +|.+++++|++|+.+||||||++++|||+| +++|
T Consensus 351 l~-~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~V 422 (618)
T 2whx_A 351 IT-D--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRV 422 (618)
T ss_dssp HH-H--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HH-h--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEE
Confidence 22 2 357999999999999999999986 7899999985 788899999999999999999999999998 8888
Q ss_pred --------------------EecCCCCChhhHHHHhcccCCCC-CCceEEEecC---hhhHHHHHHHHHHh
Q 011052 160 --------------------IHYELPNDPETFVHRSGRTGRAG-KEGTAILMFT---SSQRRTVRSLERDV 206 (494)
Q Consensus 160 --------------------I~~~~P~~~~~y~qr~GR~gR~G-~~g~~i~l~~---~~e~~~l~~le~~~ 206 (494)
|+|++|.+.++|+||+|||||.| .+|.|++|++ +.|...++.+++.+
T Consensus 423 Id~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 423 IDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred EECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 77888999999999999999997 4899999997 77777888888765
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=232.97 Aligned_cols=198 Identities=22% Similarity=0.309 Sum_probs=146.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChH--HHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcc------
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSW--VKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTAT------ 72 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~--i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~------ 72 (494)
|++++|...++.|+..++++.|+|+||||+|+. +..+...+...|..+...... +..++++++.....
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~v 377 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 377 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEeecCCcceeeee
Confidence 577899999999999999999999999999874 445666666666655433211 12233333221100
Q ss_pred -------------------------------------------cH---HHHHHHHHHHh--ccCCcEEEEcCChhhHHHH
Q 011052 73 -------------------------------------------SK---RTILSDLITVY--AKGGKTIVFTQTKRDADEV 104 (494)
Q Consensus 73 -------------------------------------------~k---~~~L~~ll~~~--~~~~~~IVF~~t~~~~~~l 104 (494)
.+ ...+..++..+ ....++||||++++.|+.+
T Consensus 378 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 378 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp ETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHH
Confidence 00 22333344333 2346999999999999999
Q ss_pred HHHHhc-cCc---------------------------------------eeeecCCCCHHHHHHHHccccCCCeeEEEec
Q 011052 105 SLALTS-IIA---------------------------------------SEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 105 ~~~L~~-~~~---------------------------------------~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT 144 (494)
+..|.. .+. +.++||+|++.+|+.+++.|++|.++|||||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 998863 111 7889999999999999999999999999999
Q ss_pred hhhhccCCCCcccEEEecCCCC--------ChhhHHHHhcccCCCC--CCceEEEecChh-hHHHHHHH
Q 011052 145 DVAARGLDIPNVDLIIHYELPN--------DPETFVHRSGRTGRAG--KEGTAILMFTSS-QRRTVRSL 202 (494)
Q Consensus 145 ~~~~~GiDip~v~~VI~~~~P~--------~~~~y~qr~GR~gR~G--~~g~~i~l~~~~-e~~~l~~l 202 (494)
+++++|||+|++++||+++.|. ++..|+||+|||||.| ..|.|++++.+. +...++.+
T Consensus 538 ~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred cHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 9999999999999999887644 5667999999999999 689999998765 33444444
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-23 Score=222.96 Aligned_cols=187 Identities=22% Similarity=0.286 Sum_probs=140.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCc--EEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHH
Q 011052 1 MLAVGFEEDVELILENLPPKRQ--SMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTIL 78 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q--~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L 78 (494)
|++++|..++..|++.++...| +++||||+|..+. ...+....+... ....+..+ .....
T Consensus 329 ~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~----~~~~i~~~----~~~~~---- 390 (666)
T 3o8b_A 329 STDSTTILGIGTVLDQAETAGARLVVLATATPPGSVT------VPHPNIEEVALS----NTGEIPFY----GKAIP---- 390 (666)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC------CCCTTEEEEECB----SCSSEEET----TEEEC----
T ss_pred hcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcccc------cCCcceEEEeec----ccchhHHH----Hhhhh----
Confidence 7899999999999999998877 6777999998422 122332222100 01111111 00000
Q ss_pred HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCccc
Q 011052 79 SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVD 157 (494)
Q Consensus 79 ~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~ 157 (494)
+. ..+.+++||||+|++.|+.+++.|++ ++.+..+||+|++.+ |+++..+||||||++++|||+| |+
T Consensus 391 ---l~-~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 ---IE-AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp ---GG-GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BS
T ss_pred ---hh-hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-Cc
Confidence 11 12568999999999999999999986 789999999999874 4556669999999999999997 99
Q ss_pred EEE----------ecC-----------CCCChhhHHHHhcccCCCCCCceEEEecChhhHHH--H--HHHHHHhCCCcee
Q 011052 158 LII----------HYE-----------LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRT--V--RSLERDVGCKFEF 212 (494)
Q Consensus 158 ~VI----------~~~-----------~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~--l--~~le~~~~~~~~~ 212 (494)
+|| ||| +|.+.++|+||+||||| +++|. ++|+++.|... + +.+++..+..+++
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 988 677 89999999999999999 99999 99998877654 4 7777777777776
Q ss_pred cCCCCHH
Q 011052 213 VSPPVVE 219 (494)
Q Consensus 213 ~~~p~~~ 219 (494)
...|..+
T Consensus 537 ~~l~~~~ 543 (666)
T 3o8b_A 537 YELTPAE 543 (666)
T ss_dssp SCCCHHH
T ss_pred ccCCchH
Confidence 6666443
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-24 Score=222.77 Aligned_cols=177 Identities=19% Similarity=0.200 Sum_probs=124.0
Q ss_pred CChHHHHHHHHHhC-CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHH
Q 011052 4 VGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~l-p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 82 (494)
.+|...+..+.+.+ +.++|+++||||+|+.+..++. .+..+..+ ...++...+...+..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~~~~~~l~ 174 (440)
T 1yks_A 113 PASIAARGWAAHRARANESATILMTATPPGTSDEFPH----SNGEIEDV--------------QTDIPSEPWNTGHDWIL 174 (440)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC----CSSCEEEE--------------ECCCCSSCCSSSCHHHH
T ss_pred cchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh----cCCCeeEe--------------eeccChHHHHHHHHHHH
Confidence 34444444444443 3679999999999877543321 11111111 01111111222222332
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
+ .+.++||||+|++.|+.+++.|+. ++.+..+|| ++|++++++|++|+++|||||+++++|||+| +++||+
T Consensus 175 ~---~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 A---DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp H---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEE
T ss_pred h---cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEe
Confidence 2 357999999999999999999986 789999999 4688999999999999999999999999999 999986
Q ss_pred -------------------cCCCCChhhHHHHhcccCCC-CCCceEEEec---ChhhHHHHHHHHHHh
Q 011052 162 -------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (494)
Q Consensus 162 -------------------~~~P~~~~~y~qr~GR~gR~-G~~g~~i~l~---~~~e~~~l~~le~~~ 206 (494)
|+.|.+.++|+||+||+||. +++|.|++|+ ++.+...++.++..+
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 89999999999999999998 6899999996 677777777777664
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-23 Score=227.54 Aligned_cols=127 Identities=25% Similarity=0.252 Sum_probs=113.3
Q ss_pred EEcCcccHHHHHHHHHHH-hccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEec
Q 011052 67 ISTTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 67 ~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT 144 (494)
+.+....|...|..++.. +..+.++||||+|++.++.|+..|.+ ++++.+|||++.+.++..+.++|+.| .|+|||
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 345556788888777754 34567999999999999999999986 89999999999988998899999988 599999
Q ss_pred hhhhccCCCCc--------------------------------c-----cEEEecCCCCChhhHHHHhcccCCCCCCceE
Q 011052 145 DVAARGLDIPN--------------------------------V-----DLIIHYELPNDPETFVHRSGRTGRAGKEGTA 187 (494)
Q Consensus 145 ~~~~~GiDip~--------------------------------v-----~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~ 187 (494)
|+|+||+||+. | .|||+|+.|.+.+.|+||+|||||+|.+|.+
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999999987 4 6999999999999999999999999999999
Q ss_pred EEecChhh
Q 011052 188 ILMFTSSQ 195 (494)
Q Consensus 188 i~l~~~~e 195 (494)
++|++..|
T Consensus 577 ~~fls~eD 584 (853)
T 2fsf_A 577 RFYLSMED 584 (853)
T ss_dssp EEEEETTS
T ss_pred EEEecccH
Confidence 99998776
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-22 Score=219.32 Aligned_cols=186 Identities=23% Similarity=0.374 Sum_probs=137.0
Q ss_pred CCChHHHHHHHHHhC---CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEecccccccccc----ceEEEEEEcC-----
Q 011052 3 AVGFEEDVELILENL---PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE----GIKLYAISTT----- 70 (494)
Q Consensus 3 ~~GF~~~i~~Il~~l---p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~----~i~~~~~~~~----- 70 (494)
+.++...++.|+..+ .++.|+|+||||+|+ ...+++ ++..+ .+..... ...+.. .....+....
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~ 227 (702)
T 2p6r_A 152 SEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDAD-YYVSDWR-PVPLVEGVLCEGTLELFDGAFSTSR 227 (702)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCE-EEECCCC-SSCEEEEEECSSEEEEEETTEEEEE
T ss_pred CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCC-cccCCCC-CccceEEEeeCCeeeccCcchhhhh
Confidence 446777777777665 578999999999986 455554 55432 2221110 000000 0001111110
Q ss_pred cccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc-------------------------------CceeeecC
Q 011052 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------IASEALHG 119 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------------------------------~~~~~lhg 119 (494)
...+.+.+.++ +.+++++||||++++.++.++..|... ..+.++||
T Consensus 228 ~~~~~~~~~~~---~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~ 304 (702)
T 2p6r_A 228 RVKFEELVEEC---VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304 (702)
T ss_dssp ECCHHHHHHHH---HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT
T ss_pred hhhHHHHHHHH---HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC
Confidence 00134444443 346789999999999999999988632 25788999
Q ss_pred CCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe----cC---CCCChhhHHHHhcccCCCC--CCceEEEe
Q 011052 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE---LPNDPETFVHRSGRTGRAG--KEGTAILM 190 (494)
Q Consensus 120 ~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~---~P~~~~~y~qr~GR~gR~G--~~g~~i~l 190 (494)
+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.|+++
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999999 76 7999999999999999998 58999999
Q ss_pred cChhh
Q 011052 191 FTSSQ 195 (494)
Q Consensus 191 ~~~~e 195 (494)
+++.+
T Consensus 385 ~~~~~ 389 (702)
T 2p6r_A 385 VGKRD 389 (702)
T ss_dssp CCGGG
T ss_pred ecCcc
Confidence 99887
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-23 Score=238.58 Aligned_cols=206 Identities=18% Similarity=0.279 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhC-----------CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccH
Q 011052 6 FEEDVELILENL-----------PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK 74 (494)
Q Consensus 6 F~~~i~~Il~~l-----------p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k 74 (494)
|..+++.|+..+ +..+|+++||||++.. ..++..++.++..+.+. .......++.+.++ ..+|
T Consensus 190 ~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--~~~~~~~~i~~~~~---~~~k 263 (1054)
T 1gku_B 190 ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--SSRITVRNVEDVAV---NDES 263 (1054)
T ss_dssp STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--CCEECCCCEEEEEE---SCCC
T ss_pred ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--CcccCcCCceEEEe---chhH
Confidence 446677777766 4578999999999987 65555555555444432 22233456777665 2456
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEe----chhhhcc
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVA----TDVAARG 150 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVa----T~~~~~G 150 (494)
.+.|..++... +.++||||+|++.|+.+++.|...+.+..+||+| .+++++|++|+++|||| |+++++|
T Consensus 264 ~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rG 336 (1054)
T 1gku_B 264 ISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRG 336 (1054)
T ss_dssp TTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CC
T ss_pred HHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEec
Confidence 66677777654 5789999999999999999998668999999998 37888999999999999 9999999
Q ss_pred CCCCcc-cEEEecCCC----------------------------------------------------------------
Q 011052 151 LDIPNV-DLIIHYELP---------------------------------------------------------------- 165 (494)
Q Consensus 151 iDip~v-~~VI~~~~P---------------------------------------------------------------- 165 (494)
||+|+| ++|||||+|
T Consensus 337 IDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 416 (1054)
T 1gku_B 337 LDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVV 416 (1054)
T ss_dssp SCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEE
T ss_pred cccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeE
Confidence 999996 999999999
Q ss_pred -------CChhhHHHHhcccCCCCCCc--eEEEecChhhHHHHHHHHHHhC---CCceecCCCCHHHHHHH
Q 011052 166 -------NDPETFVHRSGRTGRAGKEG--TAILMFTSSQRRTVRSLERDVG---CKFEFVSPPVVEDVLES 224 (494)
Q Consensus 166 -------~~~~~y~qr~GR~gR~G~~g--~~i~l~~~~e~~~l~~le~~~~---~~~~~~~~p~~~~i~~~ 224 (494)
.+.++|+||+|||||.|..| .+++++...+...++.|++.++ .++.....+..+++++.
T Consensus 417 ~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 487 (1054)
T 1gku_B 417 REGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSRE 487 (1054)
T ss_dssp ETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHHHH
T ss_pred eecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHHHh
Confidence 78999999999999987665 3666666667778888887776 45555556666666654
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=208.69 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhcc-------------CceeeecCCCCHHHHHHHHccccC-
Q 011052 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ- 135 (494)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~-------------~~~~~lhg~~~~~~R~~~l~~Fr~- 135 (494)
.|...|..++... .++.++||||++++.++.+++.|... .....+||+|++.+|.+++++|++
T Consensus 372 ~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 372 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 3555566666543 45689999999999999999999742 234456788999999999999999
Q ss_pred CCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHH
Q 011052 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (494)
Q Consensus 136 g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~ 197 (494)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+..
T Consensus 452 g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 452 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp --CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999999999999999999999999999999999 999 799999999887654
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=216.98 Aligned_cols=199 Identities=22% Similarity=0.243 Sum_probs=145.7
Q ss_pred CCCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEE------EcC-----
Q 011052 2 LAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAI------STT----- 70 (494)
Q Consensus 2 L~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~------~~~----- 70 (494)
.+.++...++.|+..++.+.|+|+||||+|+ ...+++ |+..+ .+... ... ..+...+. ...
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~---~rp--~~l~~~~~~~~~~~~~~~~~~~ 222 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAE-WLNAE-LIVSD---WRP--VKLRRGVFYQGFVTWEDGSIDR 222 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHH-HTTEE-EEECC---CCS--SEEEEEEEETTEEEETTSCEEE
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHH-HhCCc-ccCCC---CCC--CcceEEEEeCCeeeccccchhh
Confidence 3457788899999988778999999999986 355554 44421 12111 000 01111111 111
Q ss_pred cccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc----------------------------------Cceee
Q 011052 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI----------------------------------IASEA 116 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~----------------------------------~~~~~ 116 (494)
...+.+.+.++ +.+++++||||+|++.|+.++..|.+. ..+.+
T Consensus 223 ~~~~~~~~~~~---~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~ 299 (720)
T 2zj8_A 223 FSSWEELVYDA---IRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAF 299 (720)
T ss_dssp CSSTTHHHHHH---HHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEE
T ss_pred hhHHHHHHHHH---HhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeee
Confidence 12333444443 345689999999999999999988642 13889
Q ss_pred ecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe----cC----CCCChhhHHHHhcccCCCC--CCce
Q 011052 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE----LPNDPETFVHRSGRTGRAG--KEGT 186 (494)
Q Consensus 117 lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~----~P~~~~~y~qr~GR~gR~G--~~g~ 186 (494)
+|++|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| ..|.
T Consensus 300 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~ 379 (720)
T 2zj8_A 300 HHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGE 379 (720)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCce
Confidence 999999999999999999999999999999999999999999998 77 5899999999999999988 5799
Q ss_pred EEEecChhhHHHHHHHHHHhCCCceec
Q 011052 187 AILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 187 ~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (494)
|++++++.+. ...+++.+..+++.+
T Consensus 380 ~~~l~~~~~~--~~~~~~~~~~~~~~i 404 (720)
T 2zj8_A 380 GIIVSTSDDP--REVMNHYIFGKPEKL 404 (720)
T ss_dssp EEEECSSSCH--HHHHHHHTTSCCCCC
T ss_pred EEEEecCccH--HHHHHHHhcCCCCCc
Confidence 9999998772 223445554444443
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=219.90 Aligned_cols=198 Identities=22% Similarity=0.322 Sum_probs=146.4
Q ss_pred CCCCChHHHHHHHHHhCCCCCcEEEEeecCChHHH--HHHHHHcCCCcEEEeccccccccccceEEEEEEcC--------
Q 011052 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVK--KLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTT-------- 70 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~--~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~-------- 70 (494)
|+++++...++.++..+|++.|+|+||||+|+... .........+..+...... +..++++++...
T Consensus 204 l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~~ 279 (1010)
T 2xgj_A 204 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVV 279 (1010)
T ss_dssp GGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC----SSCEEEEEEETTSSCCEEEE
T ss_pred hcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEEecCCcceeeee
Confidence 45677888899999999999999999999987532 3333333445544332111 122444433211
Q ss_pred -ccc-----------------------------------H--------HHHHHHHHHHh--ccCCcEEEEcCChhhHHHH
Q 011052 71 -ATS-----------------------------------K--------RTILSDLITVY--AKGGKTIVFTQTKRDADEV 104 (494)
Q Consensus 71 -~~~-----------------------------------k--------~~~L~~ll~~~--~~~~~~IVF~~t~~~~~~l 104 (494)
... | ...+..++..+ ....++||||+|+..|+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~l 359 (1010)
T 2xgj_A 280 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 359 (1010)
T ss_dssp CTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHH
Confidence 000 1 12233333332 1345899999999999999
Q ss_pred HHHHhc-cC---------------------------------------ceeeecCCCCHHHHHHHHccccCCCeeEEEec
Q 011052 105 SLALTS-II---------------------------------------ASEALHGDISQHQRERTLNGFRQGKFTVLVAT 144 (494)
Q Consensus 105 ~~~L~~-~~---------------------------------------~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT 144 (494)
+..|.. .+ .+..+||+|++.+|+.+++.|++|.++|||||
T Consensus 360 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT 439 (1010)
T 2xgj_A 360 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 439 (1010)
T ss_dssp HHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 998864 21 27789999999999999999999999999999
Q ss_pred hhhhccCCCCcccEEEe----cCC----CCChhhHHHHhcccCCCCC--CceEEEecChh-hHHHHHHH
Q 011052 145 DVAARGLDIPNVDLIIH----YEL----PNDPETFVHRSGRTGRAGK--EGTAILMFTSS-QRRTVRSL 202 (494)
Q Consensus 145 ~~~~~GiDip~v~~VI~----~~~----P~~~~~y~qr~GR~gR~G~--~g~~i~l~~~~-e~~~l~~l 202 (494)
+++++|||+|++++||+ ||. |.++..|+||+|||||.|. .|.|++++++. +...++.+
T Consensus 440 ~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 440 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp GGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred hHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99999999999999999 999 8999999999999999995 59999999865 55455554
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-22 Score=223.69 Aligned_cols=129 Identities=22% Similarity=0.364 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-c----Cceeee--------cCCCCHHHHHHHHccccC
Q 011052 72 TSKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-I----IASEAL--------HGDISQHQRERTLNGFRQ 135 (494)
Q Consensus 72 ~~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~----~~~~~l--------hg~~~~~~R~~~l~~Fr~ 135 (494)
..|.+.|..++... .++.++||||++++.|+.+++.|.. + +.+..+ |++|++.+|.+++++|++
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~ 458 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA 458 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC---------------------------
T ss_pred CHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh
Confidence 45777777777665 2567999999999999999999986 3 788888 559999999999999998
Q ss_pred -CCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 136 -GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 136 -g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
|+++|||||+++++|||+|+|++||+||+|+++++|+||+|| ||. +.|.++++++..+......+
T Consensus 459 ~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 459 SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp --CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 998 78999999998776554444
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=214.75 Aligned_cols=188 Identities=23% Similarity=0.368 Sum_probs=133.3
Q ss_pred CCChHHHHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccce--------EEEEEEcCc---
Q 011052 3 AVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGI--------KLYAISTTA--- 71 (494)
Q Consensus 3 ~~GF~~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i--------~~~~~~~~~--- 71 (494)
+.+|...++.|+..++ +.|+|+||||+++ ...+++ |+..+ .+..... ...+...+ .........
T Consensus 159 ~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~-~~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (715)
T 2va8_A 159 DPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAE-PVATNWR-PVPLIEGVIYPERKKKEYNVIFKDNTTK 233 (715)
T ss_dssp CTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCE-EEECCCC-SSCEEEEEEEECSSTTEEEEEETTSCEE
T ss_pred CcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCC-ccCCCCC-CCCceEEEEecCCcccceeeecCcchhh
Confidence 4567788888888887 8999999999986 355555 44422 1211100 00000000 000111110
Q ss_pred --ccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc-------------------------------------C
Q 011052 72 --TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------------I 112 (494)
Q Consensus 72 --~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------------------------------------~ 112 (494)
......+..+.+.+.+++++||||++++.++.++..|.+. .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 313 (715)
T 2va8_A 234 KVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISK 313 (715)
T ss_dssp EEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTT
T ss_pred hcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhc
Confidence 0011223333444456789999999999999999998742 2
Q ss_pred ceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe----cC-------CCCChhhHHHHhcccCCC
Q 011052 113 ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE-------LPNDPETFVHRSGRTGRA 181 (494)
Q Consensus 113 ~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~-------~P~~~~~y~qr~GR~gR~ 181 (494)
.+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~ 393 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRP 393 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCT
T ss_pred CEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCC
Confidence 4889999999999999999999999999999999999999999999999 99 899999999999999998
Q ss_pred C--CCceEEEecChhh
Q 011052 182 G--KEGTAILMFTSSQ 195 (494)
Q Consensus 182 G--~~g~~i~l~~~~e 195 (494)
| ..|.|++++++.+
T Consensus 394 g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 394 GFDQIGESIVVVRDKE 409 (715)
T ss_dssp TTCSCEEEEEECSCGG
T ss_pred CCCCCceEEEEeCCch
Confidence 8 5799999998765
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-21 Score=212.78 Aligned_cols=174 Identities=20% Similarity=0.305 Sum_probs=132.3
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCCh
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~ 98 (494)
...|+++||||+++...... .. .++............ ..+......+..++..+......+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~--~~~~~~r~~~l~~p~---i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DE--MVEQIIRPTGLLDPL---IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SS--CEEECCCTTCCCCCE---EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHhh----hC--eeeeeecccCCCCCe---EEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 46899999999987643221 11 122211111111111 2222222333444455555445668999999999
Q ss_pred hhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC-----CCChhhHH
Q 011052 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (494)
Q Consensus 99 ~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~-----P~~~~~y~ 172 (494)
..|+.+++.|.. ++.+..+||++++.+|.+++++|++|+++|||||+++++|+|+|+|++||++|. |.+.++|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 999999999986 789999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 173 qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
||+|||||. ..|.|++|+++.+....+.+
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~i 564 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIAI 564 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHHH
Confidence 999999998 68999999988765544443
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.9e-23 Score=223.89 Aligned_cols=175 Identities=14% Similarity=0.182 Sum_probs=130.8
Q ss_pred hHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHH
Q 011052 6 FEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITV 84 (494)
Q Consensus 6 F~~~i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 84 (494)
+..++..+...++ .++|+++||||+|..+..+... +...+.+.. ..+...+.+++..+.
T Consensus 348 ~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~~---------------~~~~~~~~~~l~~l~-- 407 (673)
T 2wv9_A 348 SIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVSS---------------EIPDRAWSSGFEWIT-- 407 (673)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEEC---------------CCCSSCCSSCCHHHH--
T ss_pred HHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEee---------------ecCHHHHHHHHHHHH--
Confidence 3445555555543 6799999999998775433211 111111110 011111112222222
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe--
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-- 161 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~-- 161 (494)
....++||||+|++.|+.+++.|.. ++.+..+||+ +|++++++|++|+++|||||+++++|||+| +++|||
T Consensus 408 -~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 408 -DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp -SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred -hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECC
Confidence 2468999999999999999999986 7899999994 899999999999999999999999999999 999998
Q ss_pred ------------------cCCCCChhhHHHHhcccCCC-CCCceEEEec---ChhhHHHHHHHHHHh
Q 011052 162 ------------------YELPNDPETFVHRSGRTGRA-GKEGTAILMF---TSSQRRTVRSLERDV 206 (494)
Q Consensus 162 ------------------~~~P~~~~~y~qr~GR~gR~-G~~g~~i~l~---~~~e~~~l~~le~~~ 206 (494)
|++|.+.++|+||+||+||. +++|.|++|+ ++.|...++.++...
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 67999999999999999999 7899999996 566766667676654
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-22 Score=221.07 Aligned_cols=127 Identities=24% Similarity=0.280 Sum_probs=111.3
Q ss_pred EcCcccHHHHHHHHHHH-hccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 68 STTATSKRTILSDLITV-YAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 68 ~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+....|...|...+.. +..+.++||||+|++.++.|+..|.+ ++++.+||+++.+.++..+.++|+.| .|+||||
T Consensus 439 ~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATn 516 (922)
T 1nkt_A 439 YKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATN 516 (922)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEET
T ss_pred EeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecc
Confidence 34455677777666644 44567999999999999999999986 89999999999888888888999988 5999999
Q ss_pred hhhccCCCCcc----------------------------------------------------cEEEecCCCCChhhHHH
Q 011052 146 VAARGLDIPNV----------------------------------------------------DLIIHYELPNDPETFVH 173 (494)
Q Consensus 146 ~~~~GiDip~v----------------------------------------------------~~VI~~~~P~~~~~y~q 173 (494)
+|+||+||+.+ .|||+|+.|.+...|+|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999864 59999999999999999
Q ss_pred HhcccCCCCCCceEEEecChhhH
Q 011052 174 RSGRTGRAGKEGTAILMFTSSQR 196 (494)
Q Consensus 174 r~GR~gR~G~~g~~i~l~~~~e~ 196 (494)
|+|||||+|.+|.+++|++..|.
T Consensus 597 r~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 597 LRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHHTSSGGGCCEEEEEEEETTSH
T ss_pred HhcccccCCCCeeEEEEechhHH
Confidence 99999999999999999987764
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=207.87 Aligned_cols=176 Identities=22% Similarity=0.308 Sum_probs=134.3
Q ss_pred CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCCh
Q 011052 19 PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTK 98 (494)
Q Consensus 19 ~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~ 98 (494)
...|+++||||++...... . ...+............ ...+.........++..+......+.++||||+|+
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~--~~~~~~~~r~~~l~~p---~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----S--GRVVEQIIRPTGLLDP---LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----C--SEEEEECSCTTCCCCC---EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----h--hCeeeeeeccCCCCCC---eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3679999999998754221 1 1222222111111111 11222222233344445544445678999999999
Q ss_pred hhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC-----CCChhhHH
Q 011052 99 RDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-----PNDPETFV 172 (494)
Q Consensus 99 ~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~-----P~~~~~y~ 172 (494)
..|+.+++.|.. ++.+..+|++|++.+|.+++++|++|+++|||||+++++|+|+|+|++||++|. |.+.++|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 999999999986 788999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhcccCCCCCCceEEEecChhhHHHHHHHHH
Q 011052 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLER 204 (494)
Q Consensus 173 qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~ 204 (494)
||+|||||.+ .|.+++++++.+....+.+++
T Consensus 530 Qr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999995 899999999887776666654
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-21 Score=198.82 Aligned_cols=122 Identities=34% Similarity=0.550 Sum_probs=108.6
Q ss_pred cHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecC--------CCCHHHHHHHHccccCCCeeE
Q 011052 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg--------~~~~~~R~~~l~~Fr~g~~~i 140 (494)
.|.+.|.+++..+ .++.++||||++++.++.+++.|.. ++.+..+|| +|++.+|.+++++|++++++|
T Consensus 343 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~v 422 (494)
T 1wp9_A 343 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422 (494)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceE
Confidence 4566666666664 3578999999999999999999986 789999999 999999999999999999999
Q ss_pred EEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 141 LVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.+++|+++.+
T Consensus 423 Lv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t 476 (494)
T 1wp9_A 423 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGT 476 (494)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTS
T ss_pred EEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCC
Confidence 9999999999999999999999999999999999999999997 99999988764
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-21 Score=207.19 Aligned_cols=128 Identities=24% Similarity=0.358 Sum_probs=89.7
Q ss_pred cHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhcc-----Cce--------eeecCCCCHHHHHHHHccccC-
Q 011052 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-----IAS--------EALHGDISQHQRERTLNGFRQ- 135 (494)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~-----~~~--------~~lhg~~~~~~R~~~l~~Fr~- 135 (494)
.|.+.|..++... .+..++||||++++.++.+++.|... +.+ ..+||+|++.+|.+++++|++
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 3555566666543 34589999999999999999999852 333 345669999999999999999
Q ss_pred CCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 136 g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
|+++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 999 89999999998876554443
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-21 Score=204.90 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=122.3
Q ss_pred CChHHHHHHHHHh-CCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHH
Q 011052 4 VGFEEDVELILEN-LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~-lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 82 (494)
+++...+..+... .++++|+++||||+|..+..+ +..++..+.+.. ..+.. . ...+ ...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~----~~p~~--~------~~~~----~~~l 184 (451)
T 2jlq_A 124 PCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIER----EIPER--S------WNTG----FDWI 184 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEEC----CCCSS--C------CSSS----CHHH
T ss_pred cchHHHHHHHHHhhcCCCceEEEEccCCCccchhh---hcCCCceEecCc----cCCch--h------hHHH----HHHH
Confidence 3444444444332 356899999999998865432 333444443321 00000 0 0111 1222
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH 161 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~ 161 (494)
.. ..+++||||+|++.|+.+++.|.+ ++.+..+|+++. ++++++|++|+.+|||||+++++|||+|+ ++|||
T Consensus 185 ~~--~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 185 TD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HH--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEE
T ss_pred Hh--CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEE
Confidence 22 357999999999999999999986 788999999754 57999999999999999999999999999 99999
Q ss_pred cC--------------------CCCChhhHHHHhcccCCCCC-CceEEEecCh
Q 011052 162 YE--------------------LPNDPETFVHRSGRTGRAGK-EGTAILMFTS 193 (494)
Q Consensus 162 ~~--------------------~P~~~~~y~qr~GR~gR~G~-~g~~i~l~~~ 193 (494)
|| +|.+.++|+||+|||||.|+ .|.|++|+..
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99 99999999999999999997 8899888743
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-22 Score=214.70 Aligned_cols=102 Identities=19% Similarity=0.318 Sum_probs=92.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe-----
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----- 161 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----- 161 (494)
.+++||||+|++.|+.+++.|.+ ++.+..+|++ +|.+++++|++|+.+|||||+++++|||+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 57999999999999999999986 7899999995 7888999999999999999999999999999 99999
Q ss_pred ---------------cCCCCChhhHHHHhcccCCCCC-CceEEEecChh
Q 011052 162 ---------------YELPNDPETFVHRSGRTGRAGK-EGTAILMFTSS 194 (494)
Q Consensus 162 ---------------~~~P~~~~~y~qr~GR~gR~G~-~g~~i~l~~~~ 194 (494)
|++|.+.++|+||+|||||.|. +|.|++|+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 89999998775
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-21 Score=207.39 Aligned_cols=167 Identities=21% Similarity=0.203 Sum_probs=132.4
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE-EEEEcCcccHHHHHHHHHHH-hccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL-YAISTTATSKRTILSDLITV-YAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~-~~~~~~~~~k~~~L~~ll~~-~~~~~~~IVF~~t~~ 99 (494)
++..||+|+..+...+.+.|-- .++.+ + .+.+...+.+ ..+.....+|...|...+.. +..+.++||||+|++
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l--~vv~I-P--tnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGM--EVVVI-P--THKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCC--CEEEC-C--CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHhCC--eEEEE-C--CCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHH
Confidence 6889999999988888877742 33433 2 2222233333 23445666787777776654 345789999999999
Q ss_pred hHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCC--------cccEEEecCCCCChhh
Q 011052 100 DADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIP--------NVDLIIHYELPNDPET 170 (494)
Q Consensus 100 ~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip--------~v~~VI~~~~P~~~~~ 170 (494)
.++.++..|.+ ++++.++||+..+.++..+.++|+.+ .|+||||+|+||+||+ +..+||++++|.+.+.
T Consensus 486 ~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~ 563 (822)
T 3jux_A 486 KSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRI 563 (822)
T ss_dssp HHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHH
T ss_pred HHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHH
Confidence 99999999986 89999999996555555566677766 5999999999999997 5569999999999999
Q ss_pred HHHHhcccCCCCCCceEEEecChhh
Q 011052 171 FVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 171 y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
|+||+|||||+|.+|.+++|++..|
T Consensus 564 y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 564 DNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp HHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred HHHhhCccccCCCCeeEEEEechhH
Confidence 9999999999999999999998776
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=218.85 Aligned_cols=179 Identities=17% Similarity=0.234 Sum_probs=144.8
Q ss_pred HHHHHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccC
Q 011052 9 DVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKG 88 (494)
Q Consensus 9 ~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~ 88 (494)
...+++..++.+.|+++||||+++....++...+.++..+... ......+..+.... .+..+...++.....+
T Consensus 740 ~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~----~~~r~~i~~~~~~~---~~~~i~~~il~~l~~g 812 (1151)
T 2eyq_A 740 RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP----PARRLAVKTFVREY---DSMVVREAILREILRG 812 (1151)
T ss_dssp HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC----CCBCBCEEEEEEEC---CHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC----CCCccccEEEEecC---CHHHHHHHHHHHHhcC
Confidence 4567777777889999999998877777666555554433221 11122344433322 3445556666676678
Q ss_pred CcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC-
Q 011052 89 GKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL- 164 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~- 164 (494)
++++|||++++.++.+++.|++ .+.+..+||+|++.+|++++++|++|+++|||||+++++|||+|++++||+++.
T Consensus 813 ~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~ 892 (1151)
T 2eyq_A 813 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 892 (1151)
T ss_dssp CEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTT
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCC
Confidence 9999999999999999999986 467999999999999999999999999999999999999999999999999988
Q ss_pred CCChhhHHHHhcccCCCCCCceEEEecChh
Q 011052 165 PNDPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 165 P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~ 194 (494)
+.+..+|+||+||+||.|+.|.|++++.+.
T Consensus 893 ~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 893 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 579999999999999999999999998764
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=210.90 Aligned_cols=126 Identities=25% Similarity=0.324 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cC---------------------------------------ce
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-II---------------------------------------AS 114 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~---------------------------------------~~ 114 (494)
...|...+... ...++||||+|++.|+.++..|.. ++ .+
T Consensus 324 ~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 324 WPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 33444444433 447999999999999999998864 22 47
Q ss_pred eeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCC---------CChhhHHHHhcccCCCC--C
Q 011052 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELP---------NDPETFVHRSGRTGRAG--K 183 (494)
Q Consensus 115 ~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P---------~~~~~y~qr~GR~gR~G--~ 183 (494)
.++|++|++.+|+.+++.|++|.++|||||+++++|||+|++.+ |++++| .++..|+||+|||||.| .
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~V-Vi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~ 481 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTV-IFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDS 481 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEE-EESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCS
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceE-EEeccccccCccCCCCCHHHHhHHhcccccCCCCc
Confidence 89999999999999999999999999999999999999999554 544444 49999999999999998 6
Q ss_pred CceEEEecC--hhhHHHHHHH
Q 011052 184 EGTAILMFT--SSQRRTVRSL 202 (494)
Q Consensus 184 ~g~~i~l~~--~~e~~~l~~l 202 (494)
.|.|++++. ..+...++.+
T Consensus 482 ~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 482 TGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp SEEEEEECCSSCCCHHHHHHH
T ss_pred ceEEEEecCCCcchHHHHHHH
Confidence 788888873 3344455544
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-20 Score=207.07 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-------------cCceeeecCCCCHHHHHHHHccccC-
Q 011052 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-------------IIASEALHGDISQHQRERTLNGFRQ- 135 (494)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-------------~~~~~~lhg~~~~~~R~~~l~~Fr~- 135 (494)
.|...|..+|... .++.++||||++++.++.+++.|.. +..+..+||+|++.+|.+++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3555566666542 4568999999999999999999974 2345567899999999999999999
Q ss_pred CCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHH
Q 011052 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (494)
Q Consensus 136 g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~ 197 (494)
|.++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|+++.+..
T Consensus 693 g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 693 KDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp -CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred CCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 999999999999999999999999999999999999999999 999 799999999887643
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-20 Score=209.93 Aligned_cols=166 Identities=17% Similarity=0.252 Sum_probs=143.5
Q ss_pred CcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCCC--eeEEEech
Q 011052 70 TATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQGK--FTVLVATD 145 (494)
Q Consensus 70 ~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g~--~~iLVaT~ 145 (494)
....|...|..++... ++.++||||++++.++.+++.|.. ++.+..+||+|++.+|++++++|++++ ++|||||+
T Consensus 486 ~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 486 NFDPRVEWLMGYLTSH-RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TTSHHHHHHHHHHHHT-SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred CccHHHHHHHHHHHhC-CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc
Confidence 3456888888888773 678999999999999999999984 789999999999999999999999998 99999999
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHh--CCCceecCCCCHHHHHH
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDV--GCKFEFVSPPVVEDVLE 223 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~--~~~~~~~~~p~~~~i~~ 223 (494)
++++|+|+|++++||+||+|+++..|+||+||++|.|+++.+++++...+....+.|.+.. +.++.....|..+++.+
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~~ 644 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYD 644 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHHH
T ss_pred hhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCCHHHHHH
Confidence 9999999999999999999999999999999999999998777765544444445555555 56666778899999999
Q ss_pred HHHHHHHHHHccC
Q 011052 224 SSAEQVVATLNGV 236 (494)
Q Consensus 224 ~~~~~~~~~l~~~ 236 (494)
...+.+...+...
T Consensus 645 ~~~~~l~~~l~~~ 657 (968)
T 3dmq_A 645 SVYNDLINYLASP 657 (968)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcc
Confidence 8888888877654
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.5e-20 Score=200.26 Aligned_cols=191 Identities=17% Similarity=0.166 Sum_probs=141.4
Q ss_pred CCCCChHHHHHHHHHhCC-CCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHH
Q 011052 1 MLAVGFEEDVELILENLP-PKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILS 79 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~lp-~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 79 (494)
|++++|..+++.++..++ ++.|++++|||. +.+..++... ..+..+... .. ...... .... +.
T Consensus 251 l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~~----~r-~~~l~~---~~~~------l~ 314 (677)
T 3rc3_A 251 IRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRDY----KR-LTPISV---LDHA------LE 314 (677)
T ss_dssp GGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEEC----CC-SSCEEE---CSSC------CC
T ss_pred cCCccchHHHHHHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEEe----ee-cchHHH---HHHH------HH
Confidence 568899999999999998 788999999996 3455555443 333333211 00 011110 0000 00
Q ss_pred HHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccC--CCeeEEEechhhhccCCCCcc
Q 011052 80 DLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQ--GKFTVLVATDVAARGLDIPNV 156 (494)
Q Consensus 80 ~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~--g~~~iLVaT~~~~~GiDip~v 156 (494)
.+.. .....||||+|++.++.+++.|.+ ++.+.++||+|++.+|.++++.|++ |.++|||||+++++|||+ +|
T Consensus 315 -~l~~--~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v 390 (677)
T 3rc3_A 315 -SLDN--LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SI 390 (677)
T ss_dssp -SGGG--CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CB
T ss_pred -HHHh--cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Cc
Confidence 1111 134568999999999999999986 7899999999999999999999999 889999999999999999 89
Q ss_pred cEEEecCC--------------CCChhhHHHHhcccCCCCCC---ceEEEecChhhHHHHHHHHHHhCCCcee
Q 011052 157 DLIIHYEL--------------PNDPETFVHRSGRTGRAGKE---GTAILMFTSSQRRTVRSLERDVGCKFEF 212 (494)
Q Consensus 157 ~~VI~~~~--------------P~~~~~y~qr~GR~gR~G~~---g~~i~l~~~~e~~~l~~le~~~~~~~~~ 212 (494)
++||++++ |.+.++|+||+|||||.|.. |.|++++.. +...++.+.......++.
T Consensus 391 ~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 391 RRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp SEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSCCCCCCC
T ss_pred cEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcCcchhhh
Confidence 99999999 88999999999999999954 677666544 445566665554444444
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-20 Score=204.82 Aligned_cols=102 Identities=28% Similarity=0.523 Sum_probs=88.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-------cCceeeecCC--------CCHHHHHHHHccccCCCeeEEEechhhhccCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-------IIASEALHGD--------ISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-------~~~~~~lhg~--------~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiD 152 (494)
+.++||||++++.++.+++.|.. ++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 68999999999999999999985 4889999999 99999999999999999999999999999999
Q ss_pred CCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecC
Q 011052 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (494)
Q Consensus 153 ip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~ 192 (494)
+|+|++||+||+|++++.|+||+||+||.| .+++++.
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~ 516 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE---STYVLVA 516 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEE
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEE
Confidence 999999999999999999999999976654 4444443
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=202.38 Aligned_cols=122 Identities=20% Similarity=0.340 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhcc-------------CceeeecCCCCHHHHHHHHccccC-C
Q 011052 74 KRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTSI-------------IASEALHGDISQHQRERTLNGFRQ-G 136 (494)
Q Consensus 74 k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~~-------------~~~~~lhg~~~~~~R~~~l~~Fr~-g 136 (494)
|...|.++|... .++.++||||++++.++.+++.|... ..+..+||+|++.+|.+++++|++ |
T Consensus 614 K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 614 KLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp HHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 445555555543 34689999999999999999999842 234566899999999999999999 9
Q ss_pred CeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHH
Q 011052 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRR 197 (494)
Q Consensus 137 ~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~ 197 (494)
.++|||||+++++|||+|+|++||+||+|+++..|+||+|| ||. +.|.+++|++..+..
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 99999999999999999999999999999999999999999 999 789999998876543
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-20 Score=207.48 Aligned_cols=173 Identities=17% Similarity=0.264 Sum_probs=127.7
Q ss_pred CCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcC
Q 011052 17 LPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQ 96 (494)
Q Consensus 17 lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~ 96 (494)
...++|+++||||+++....+. +..+.....+..... ....+..+. ........++..+.+....+.+++|||+
T Consensus 513 ~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~--~r~~i~~~~--~~~~~~~~l~~~i~~~l~~g~qvlVf~~ 586 (780)
T 1gm5_A 513 KGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPP--GRKEVQTML--VPMDRVNEVYEFVRQEVMRGGQAFIVYP 586 (780)
T ss_dssp SSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCS--SCCCCEECC--CCSSTHHHHHHHHHHHTTTSCCBCCBCC
T ss_pred hCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCC--CCcceEEEE--eccchHHHHHHHHHHHHhcCCcEEEEec
Confidence 3457899999999876654433 333322111111111 112233222 2233344445555555566789999999
Q ss_pred Ch--------hhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC
Q 011052 97 TK--------RDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL 164 (494)
Q Consensus 97 t~--------~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~ 164 (494)
+. ..++.+++.|.+ .+.+..+||+|++.+|++++++|++|+++|||||+++++|+|+|++++||++++
T Consensus 587 ~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~ 666 (780)
T 1gm5_A 587 LIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENP 666 (780)
T ss_dssp CC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSC
T ss_pred chhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCC
Confidence 76 457888888876 457899999999999999999999999999999999999999999999999999
Q ss_pred CC-ChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 165 PN-DPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 165 P~-~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
|. +...|+||+||+||.|+.|.|++++.+.+
T Consensus 667 ~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~ 698 (780)
T 1gm5_A 667 ERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVG 698 (780)
T ss_dssp SSSCTTHHHHHHHTSCCSSTTCEEECCCCSCC
T ss_pred CCCCHHHHHHHhcccCcCCCCCEEEEEECCCC
Confidence 96 78899999999999999999999998433
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-20 Score=194.55 Aligned_cols=162 Identities=17% Similarity=0.186 Sum_probs=116.2
Q ss_pred CChHHHHHHHHHhC-CCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccHHHHHHHHH
Q 011052 4 VGFEEDVELILENL-PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSKRTILSDLI 82 (494)
Q Consensus 4 ~GF~~~i~~Il~~l-p~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 82 (494)
++|...+..+.... +.++|+++||||+|+.+..+.. .++..+.+.. ..+.... ..+..++
T Consensus 107 ~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~---~~~~i~~~~~---------------~~~~~~~-~~~~~~l 167 (431)
T 2v6i_A 107 PASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP---SNSPIIDEET---------------RIPDKAW-NSGYEWI 167 (431)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC---CSSCCEEEEC---------------CCCSSCC-SSCCHHH
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC---CCCceeeccc---------------cCCHHHH-HHHHHHH
Confidence 34555555555543 5689999999999875432211 0111111110 0111111 1112223
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccE---
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDL--- 158 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~--- 158 (494)
.. ..+++||||++++.|+.+++.|++ ++.+..+||+ +|++++++|++|+++|||||+++++|+|+| +.+
T Consensus 168 ~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~ 240 (431)
T 2v6i_A 168 TE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVID 240 (431)
T ss_dssp HS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEE
T ss_pred Hc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEe
Confidence 32 357999999999999999999986 7889999997 678899999999999999999999999999 544
Q ss_pred --------------EEecCCCCChhhHHHHhcccCCCCC-CceEEEec
Q 011052 159 --------------IIHYELPNDPETFVHRSGRTGRAGK-EGTAILMF 191 (494)
Q Consensus 159 --------------VI~~~~P~~~~~y~qr~GR~gR~G~-~g~~i~l~ 191 (494)
||+++.|.+.++|+||+||+||.|. .+.++++.
T Consensus 241 ~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 241 PRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 6788999999999999999999985 55556655
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=207.27 Aligned_cols=188 Identities=14% Similarity=0.170 Sum_probs=136.7
Q ss_pred HHHHhCCCCCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEEEEEcCcccH-------HHHHHHHHHH
Q 011052 12 LILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLYAISTTATSK-------RTILSDLITV 84 (494)
Q Consensus 12 ~Il~~lp~~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~~~~~~~~~k-------~~~L~~ll~~ 84 (494)
.|...++++.|+|+||||+|+ ..+++++.-.++..+........ +..++++......... ...+...+..
T Consensus 1075 ~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~R--PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 1151 (1724)
T 4f92_B 1075 YISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVR--PVPLELHIQGFNISHTQTRLLSMAKPVYHAITK 1151 (1724)
T ss_dssp HHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGC--SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHH
T ss_pred HHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCC--CCCeEEEEEeccCCCchhhhhhhcchHHHHHHH
Confidence 344456788999999999986 45666654333332222211111 1223332222222111 1233455566
Q ss_pred hccCCcEEEEcCChhhHHHHHHHHhc-----------------------------------cCceeeecCCCCHHHHHHH
Q 011052 85 YAKGGKTIVFTQTKRDADEVSLALTS-----------------------------------IIASEALHGDISQHQRERT 129 (494)
Q Consensus 85 ~~~~~~~IVF~~t~~~~~~l~~~L~~-----------------------------------~~~~~~lhg~~~~~~R~~~ 129 (494)
+.+..++||||+|+..|+.++..|.. ...+..+|++|++.+|..+
T Consensus 1152 ~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1152 HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLV 1231 (1724)
T ss_dssp HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHH
T ss_pred hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHH
Confidence 66778999999999999988876631 0247789999999999999
Q ss_pred HccccCCCeeEEEechhhhccCCCCcccEEEe----------cCCCCChhhHHHHhcccCCCCC--CceEEEecChhhHH
Q 011052 130 LNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----------YELPNDPETFVHRSGRTGRAGK--EGTAILMFTSSQRR 197 (494)
Q Consensus 130 l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----------~~~P~~~~~y~qr~GR~gR~G~--~g~~i~l~~~~e~~ 197 (494)
++.|++|.++|||||+++++|||+|.+.+||. ...|.++.+|+||+|||||+|. .|.|++++.+.+..
T Consensus 1232 E~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~ 1311 (1724)
T 4f92_B 1232 EQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKD 1311 (1724)
T ss_dssp HHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHH
T ss_pred HHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHH
Confidence 99999999999999999999999999999993 2347789999999999999995 79999999988877
Q ss_pred HHHHH
Q 011052 198 TVRSL 202 (494)
Q Consensus 198 ~l~~l 202 (494)
.++.+
T Consensus 1312 ~~~~l 1316 (1724)
T 4f92_B 1312 FFKKF 1316 (1724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-20 Score=193.74 Aligned_cols=113 Identities=26% Similarity=0.453 Sum_probs=101.3
Q ss_pred ccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccC
Q 011052 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~Gi 151 (494)
..|.+.|.+++... .+.++||||++++.++.+++.|. +..+||++++.+|++++++|++++++|||||+++++|+
T Consensus 334 ~~k~~~l~~~l~~~-~~~k~lvF~~~~~~~~~l~~~l~----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gl 408 (472)
T 2fwr_A 334 KNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVFL----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 408 (472)
T ss_dssp SHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHTT----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred hHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHhC----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCc
Confidence 45677788888774 57899999999999999998874 67899999999999999999999999999999999999
Q ss_pred CCCcccEEEecCCCCChhhHHHHhcccCCCCCC-ceEEE
Q 011052 152 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE-GTAIL 189 (494)
Q Consensus 152 Dip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~-g~~i~ 189 (494)
|+|++++||++++|+++..|+||+||+||.|.. +.+++
T Consensus 409 dlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i 447 (472)
T 2fwr_A 409 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVL 447 (472)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEE
T ss_pred ccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEE
Confidence 999999999999999999999999999999854 34444
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-18 Score=182.90 Aligned_cols=184 Identities=11% Similarity=0.109 Sum_probs=128.8
Q ss_pred HHHHHHHHhCCCCCcEEEEeecCChHHHHHHH-HHcCCCcEEEecccc----ccccccceEEEEEEcCc-----------
Q 011052 8 EDVELILENLPPKRQSMLFSATMPSWVKKLSR-KYLDNPLNIDLVGNQ----DEKLAEGIKLYAISTTA----------- 71 (494)
Q Consensus 8 ~~i~~Il~~lp~~~q~ll~SATlp~~i~~l~~-~~l~~p~~i~~~~~~----~~~~~~~i~~~~~~~~~----------- 71 (494)
.++..|++.++...++++||||+|.....+.. ..+..+..+.+.... .......+....+..+.
T Consensus 240 ~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (510)
T 2oca_A 240 KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTY 319 (510)
T ss_dssp HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCH
T ss_pred ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccch
Confidence 56788889998889999999999766433211 112233332221100 00001111111111111
Q ss_pred ----------ccHHHHHHHHHHHh-cc-CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCe
Q 011052 72 ----------TSKRTILSDLITVY-AK-GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (494)
Q Consensus 72 ----------~~k~~~L~~ll~~~-~~-~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~ 138 (494)
..+.+.+.+++... .. ..++||||+ .+.++.+++.|.+ ...+..+||+|++.+|+++++.|++++.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 320 QEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 12333444444443 22 345667776 8888899999986 4689999999999999999999999999
Q ss_pred eEEEec-hhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecC
Q 011052 139 TVLVAT-DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (494)
Q Consensus 139 ~iLVaT-~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~ 192 (494)
+||||| +++++|+|+|++++||++++|+++..|+||+||+||.|..+.++++++
T Consensus 399 ~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 399 IIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999 999999999999999999999999999999999999998775555444
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=168.33 Aligned_cols=120 Identities=17% Similarity=0.298 Sum_probs=94.9
Q ss_pred CcccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCC-Cee-EEEec
Q 011052 70 TATSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVAT 144 (494)
Q Consensus 70 ~~~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~-iLVaT 144 (494)
....|...|.+++... ..+.++||||+++..++.+...|.. ++.+..+||++++.+|.+++++|+++ .++ +||+|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3457888888888765 3568999999999999999999975 78899999999999999999999988 676 78999
Q ss_pred hhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 145 DVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 145 ~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
+++++|||++.+++||+||+||++..|+||+||++|.|+++.+.+
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v 217 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 217 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEE
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEE
Confidence 999999999999999999999999999999999999997766533
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.74 E-value=4.9e-18 Score=202.75 Aligned_cols=184 Identities=20% Similarity=0.319 Sum_probs=131.6
Q ss_pred HhCCCCCcEEEEeecCChHHHHHHHHHcC-CCc-EEEeccccccccccceEEEEEEcCccc---HHHHHH----HHHHHh
Q 011052 15 ENLPPKRQSMLFSATMPSWVKKLSRKYLD-NPL-NIDLVGNQDEKLAEGIKLYAISTTATS---KRTILS----DLITVY 85 (494)
Q Consensus 15 ~~lp~~~q~ll~SATlp~~i~~l~~~~l~-~p~-~i~~~~~~~~~~~~~i~~~~~~~~~~~---k~~~L~----~ll~~~ 85 (494)
..++++.|+|++|||+|+ ..++++ |+. ++. .+.+...... +..+++.++...... +.+.+. ..+..+
T Consensus 239 ~~~~~~~riI~LSATl~N-~~dvA~-wL~~~~~~~~~~~~~~~R--PvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPN-YEDVAT-FLRVDPAKGLFYFDNSFR--PVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH 314 (1724)
T ss_dssp HHHTCCCEEEEEECSCTT-HHHHHH-HTTCCHHHHEEECCGGGC--SSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCCCcEEEEecccCC-HHHHHH-HhCCCCCCCeEEECCCCc--cCccEEEEeccCCcchhhhhHHHHHHHHHHHHHH
Confidence 356788999999999986 455665 454 221 1222221111 223444444333322 222222 223233
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhcc--------------------------------------CceeeecCCCCHHHHH
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTSI--------------------------------------IASEALHGDISQHQRE 127 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~~--------------------------------------~~~~~lhg~~~~~~R~ 127 (494)
...+++||||+|++.|+.++..|.+. ..+.++||+|++.+|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 44579999999999999988877420 1377899999999999
Q ss_pred HHHccccCCCeeEEEechhhhccCCCCcccEEEe----cC------CCCChhhHHHHhcccCCCC--CCceEEEecChhh
Q 011052 128 RTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH----YE------LPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (494)
Q Consensus 128 ~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~----~~------~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e 195 (494)
.+++.|++|.++|||||+++++|||+|.+++||. |+ .|.++.+|+||+|||||+| ..|.+++++.+.+
T Consensus 395 ~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTT
T ss_pred HHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchh
Confidence 9999999999999999999999999999999995 44 3568999999999999988 5799999988877
Q ss_pred HHHHHHH
Q 011052 196 RRTVRSL 202 (494)
Q Consensus 196 ~~~l~~l 202 (494)
......+
T Consensus 475 ~~~~~~l 481 (1724)
T 4f92_B 475 LQYYLSL 481 (1724)
T ss_dssp CCHHHHH
T ss_pred HHHHHHH
Confidence 5544444
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=180.44 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=88.3
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhccC---------ceeeecCCCCHHHHHHHHccccCCCee---EEEechhhhc
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSII---------ASEALHGDISQHQRERTLNGFRQGKFT---VLVATDVAAR 149 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~---------~~~~lhg~~~~~~R~~~l~~Fr~g~~~---iLVaT~~~~~ 149 (494)
+....+..++||||++++.|+.+++.|.+.. .+..+||++++ +|++++++|++++.+ |||||+++++
T Consensus 433 l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~ 511 (590)
T 3h1t_A 433 MKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTT 511 (590)
T ss_dssp HHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTT
T ss_pred HHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhc
Confidence 3333455899999999999999999997521 27789999864 799999999998766 8999999999
Q ss_pred cCCCCcccEEEecCCCCChhhHHHHhcccCCCCC
Q 011052 150 GLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK 183 (494)
Q Consensus 150 GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~ 183 (494)
|+|+|+|++||++++|.++..|+||+||++|.+.
T Consensus 512 GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 9999999999999999999999999999999774
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=160.94 Aligned_cols=118 Identities=17% Similarity=0.305 Sum_probs=100.8
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCC-Cee-EEEechh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFT-VLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~-iLVaT~~ 146 (494)
..|...+.+++... .++.++||||+++..++.+++.|.. ++.+..+||++++.+|++++++|+++ .++ +||||++
T Consensus 324 s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~ 403 (500)
T 1z63_A 324 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 403 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC
T ss_pred chhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc
Confidence 45777777777654 4568999999999999999999985 68899999999999999999999988 555 7999999
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
+++|+|+|.+++||+||+|+++..|+||+||++|.|++..+.+
T Consensus 404 ~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 404 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEE
T ss_pred ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEE
Confidence 9999999999999999999999999999999999997766544
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=157.61 Aligned_cols=134 Identities=12% Similarity=0.254 Sum_probs=112.0
Q ss_pred ccHHHHHHHHHHHhc--cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCe---eEEEech
Q 011052 72 TSKRTILSDLITVYA--KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATD 145 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~--~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~---~iLVaT~ 145 (494)
..|...|..++.... .+.++||||+++..++.+...|.. ++.+..+||++++.+|.+++++|+++.. .+||+|+
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 357777877777652 468999999999999999999985 7899999999999999999999999865 4899999
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE--ecChh--hHHHHHHHHHH
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTSS--QRRTVRSLERD 205 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~--l~~~~--e~~~l~~le~~ 205 (494)
+++.|||++.+++||+||+|+++..|.|++||++|.|++..+.+ |+... |...++.+++.
T Consensus 478 a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred cccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997765544 44432 44444444433
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=155.88 Aligned_cols=136 Identities=18% Similarity=0.341 Sum_probs=115.0
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCe---eEEEechh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~---~iLVaT~~ 146 (494)
..|..+|..++..+ ..+.++||||+.+..++.|...|.. ++.+..+||++++.+|.+++++|+++.. .+|++|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 34777888888776 3457999999999999999999985 8899999999999999999999998554 49999999
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE--ecChh--hHHHHHHHHHHhC
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL--MFTSS--QRRTVRSLERDVG 207 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~--l~~~~--e~~~l~~le~~~~ 207 (494)
++.|||++.+++||+||+|+++..++|++||+.|.|++..+.+ |++.. |...++.+++...
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997655544 44433 5566666665543
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-13 Score=151.16 Aligned_cols=120 Identities=11% Similarity=0.128 Sum_probs=94.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhcc-------------Cce-eeecCC----------C----------CH----------
Q 011052 88 GGKTIVFTQTKRDADEVSLALTSI-------------IAS-EALHGD----------I----------SQ---------- 123 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~~-------------~~~-~~lhg~----------~----------~~---------- 123 (494)
+.++||||++++.|..+++.|.+. +.+ .++|++ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 358999999999999999998752 344 455542 2 32
Q ss_pred -------------------HHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCC
Q 011052 124 -------------------HQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 184 (494)
Q Consensus 124 -------------------~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~ 184 (494)
.+|..++++|++++++|||+|+++.+|+|+|.+ +|+.+|.|.+...|+|++||++|.+..
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 247889999999999999999999999999999 788999999999999999999998753
Q ss_pred ----ceEEEecChhhHHHHHHHHHHhCCC
Q 011052 185 ----GTAILMFTSSQRRTVRSLERDVGCK 209 (494)
Q Consensus 185 ----g~~i~l~~~~e~~~l~~le~~~~~~ 209 (494)
|.++.|+.. .....+.+..+....
T Consensus 696 ~K~~G~IVdf~~~-~~~l~~Al~~y~~~~ 723 (1038)
T 2w00_A 696 TKTFGNIVTFRDL-ERSTIDAITLFGDKN 723 (1038)
T ss_dssp TCCSEEEEESSCC-HHHHHHHHHHTSCSS
T ss_pred CCCcEEEEEcccc-HHHHHHHHHHHhCCC
Confidence 667777654 334445555554443
|
| >2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5 | Back alignment and structure |
|---|
Probab=98.80 E-value=1e-08 Score=82.88 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=72.1
Q ss_pred HcCCCCCCCCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcC-cCccccccEEEeecCCcceeEEecCHHHH
Q 011052 267 LSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLPEEIA 345 (494)
Q Consensus 267 ~~g~~~~~~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~~ig~i~~~~~~~~~gs~~d~~~~~~ 345 (494)
++|+.+ +++|||+++++|++|+.+..+.+ .-.|..++.+|.+..+ ...++|++|.+..+. +|++||||++.+
T Consensus 2 ~SG~te-~~~RSLLt~~eG~~Tl~l~~~~~----i~~~~y~w~~L~~~l~e~~~~~v~~m~l~~d~--~GavFDvP~e~~ 74 (92)
T 2e29_A 2 SSGSSG-FEPRSLITSDKGFVTMTLESLEE----IQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--MGVCFDVPTTES 74 (92)
T ss_dssp CCSCSC-CCCCCCCCCCCCEEEEEEECSSC----CSSTHHHHHHHHHHSCHHHHTTCEEEEECTTS--SEEEEEEEHHHH
T ss_pred CCCcCC-CCCcccccCCCCCEEEEEecCCc----ccchHHHHHHHHHhcCHHHHhhhCeEEEecCC--CEEEEECcHHHH
Confidence 457777 45699999999999999987763 3458888899998554 445679999999886 599999999999
Q ss_pred HHHHhhcCCCCCceEee
Q 011052 346 KELLNKQIPPGNTISKI 362 (494)
Q Consensus 346 ~~~~~~~~~~~~~l~v~ 362 (494)
+++++.+.+..++++|+
T Consensus 75 ~~~~~~~~~~~~~l~v~ 91 (92)
T 2e29_A 75 ERLQAEWHDSDWILSVP 91 (92)
T ss_dssp HHHHHHCCSSSCEEECC
T ss_pred HHHHhhCCCCceEEEec
Confidence 99999977644777765
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.56 E-value=8.9e-07 Score=97.87 Aligned_cols=167 Identities=20% Similarity=0.213 Sum_probs=114.2
Q ss_pred cEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEEE-EEEcCcccHHHH-HHHHHHHhccCCcEEEEcCChh
Q 011052 22 QSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKLY-AISTTATSKRTI-LSDLITVYAKGGKTIVFTQTKR 99 (494)
Q Consensus 22 q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~~-~~~~~~~~k~~~-L~~ll~~~~~~~~~IVF~~t~~ 99 (494)
.+.-||.|...+-.++.+.|--+ ++. ++. ++......+- .+......|... +.++...+..+.++||+|.|.+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~--Vv~-IPT--n~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe 454 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMD--VVV-VPT--NRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIE 454 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCC--EEE-CCC--SSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHH
T ss_pred HheecCCCchHHHHHHHHHhCCC--EEE-cCC--CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHH
Confidence 67789999988888887777443 232 222 2222222222 222344456554 4566666677899999999999
Q ss_pred hHHHHHHHHh----------------------------------------------------------------------
Q 011052 100 DADEVSLALT---------------------------------------------------------------------- 109 (494)
Q Consensus 100 ~~~~l~~~L~---------------------------------------------------------------------- 109 (494)
..+.|+..|.
T Consensus 455 ~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 534 (997)
T 2ipc_A 455 KSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAV 534 (997)
T ss_dssp HHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhh
Confidence 9999999988
Q ss_pred ------c-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcc-------------------c------
Q 011052 110 ------S-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNV-------------------D------ 157 (494)
Q Consensus 110 ------~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v-------------------~------ 157 (494)
+ +++..+|++.-...+-+-+-+.=+. -.|-|||++|.||.||.== .
T Consensus 535 ~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~--GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~ 612 (997)
T 2ipc_A 535 HTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRS--KTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELF 612 (997)
T ss_dssp HHHHHHHHCCCCCEECSSSHHHHHHHHHTTTST--TCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHH
T ss_pred hhhHHHHcCCCeeeccccchHHHHHHHHhcCCC--CeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccc
Confidence 2 3455566655322222222233233 3599999999999998311 1
Q ss_pred -------------------------------------------------EEEecCCCCChhhHHHHhcccCCCCCCceEE
Q 011052 158 -------------------------------------------------LIIHYELPNDPETFVHRSGRTGRAGKEGTAI 188 (494)
Q Consensus 158 -------------------------------------------------~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i 188 (494)
|||-...+.+..--.|-.||+||.|.+|.+.
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSr 692 (997)
T 2ipc_A 613 IKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSR 692 (997)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEE
T ss_pred cccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeE
Confidence 7999999999999999999999999999998
Q ss_pred EecChhh
Q 011052 189 LMFTSSQ 195 (494)
Q Consensus 189 ~l~~~~e 195 (494)
+|++-.|
T Consensus 693 F~LSLeD 699 (997)
T 2ipc_A 693 FYVSFDD 699 (997)
T ss_dssp EEEESSS
T ss_pred EEEECCh
Confidence 8876554
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=92.91 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=49.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEE--echhhhccCCCCc----ccEEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLV--ATDVAARGLDIPN----VDLII 160 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV--aT~~~~~GiDip~----v~~VI 160 (494)
.++.+|||++|...++.+++.|.. + ...+++.. .++.+++++|+++. .||+ +|+.+++|||+|+ +++||
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vi 457 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLV 457 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEE
Confidence 457899999999999999988865 2 23455553 46888999998864 4665 8999999999997 89999
Q ss_pred ecCCCC
Q 011052 161 HYELPN 166 (494)
Q Consensus 161 ~~~~P~ 166 (494)
++++|.
T Consensus 458 i~~lPf 463 (540)
T 2vl7_A 458 LAGLPY 463 (540)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999884
|
| >2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B | Back alignment and structure |
|---|
Probab=98.03 E-value=4.7e-06 Score=64.92 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=52.4
Q ss_pred eEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHHHHHhhcCC
Q 011052 287 VTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 287 ~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~ 354 (494)
+|++++.++ ++++.|.+|+++|++..++..++||+|.+.+++ |||++|++.++++++.+..
T Consensus 1 ~~~~i~~Gr---k~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~----s~v~v~~~~~~~~~~~l~~ 61 (76)
T 2g0c_A 1 MKLYFNGGK---KKKIRAVDFVGTIAKIDGVSADDIGIITIMDNA----SYVEILNGKGPHVLKVMKN 61 (76)
T ss_dssp CEEEESCCC---C----CHHHHHHHHTSTTCCGGGEEEEEECSSC----EEEEECTTCHHHHHHHHTT
T ss_pred CEEEEeCCC---ccCCCHHHHHHHHHHccCCChhhccEEEEeCCc----EEEEECHHHHHHHHHHhcc
Confidence 478888888 889999999999999999999999999999998 7999999999999988765
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00029 Score=76.57 Aligned_cols=104 Identities=20% Similarity=0.260 Sum_probs=69.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEech--hhhccCCCCc--ccEEEec
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATD--VAARGLDIPN--VDLIIHY 162 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~--~~~~GiDip~--v~~VI~~ 162 (494)
.++.++||+++....+++++.|. .+... ..-+++..++..++++|+ ++-.||++|. .+.+|||+|+ ++.||..
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~-~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVS-FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCC-SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHH-hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 35789999999999999998886 33222 555666678999999999 7788999975 8999999975 6688887
Q ss_pred CCCCCh-----------------------------hhHHHHhcccCCCCCCceEEEecCh
Q 011052 163 ELPNDP-----------------------------ETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 163 ~~P~~~-----------------------------~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
.+|... ....|-+||.=|.-..--++++++.
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 776421 1126889998886544334444444
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.55 E-value=4.8e-05 Score=72.69 Aligned_cols=62 Identities=34% Similarity=0.589 Sum_probs=44.9
Q ss_pred CCCCChHHHHHHHHHh--CCC--CCcEEEEeecCChHHHHHHHHHcCCCcEEEeccccccccccceEE
Q 011052 1 MLAVGFEEDVELILEN--LPP--KRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAEGIKL 64 (494)
Q Consensus 1 mL~~GF~~~i~~Il~~--lp~--~~q~ll~SATlp~~i~~l~~~~l~~p~~i~~~~~~~~~~~~~i~~ 64 (494)
|+++||.+++..|+.. ++. ++|+++||||+|+++.++++.++.+|..|.+.. ......+++|
T Consensus 186 ~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~--~~~~~~~i~q 251 (253)
T 1wrb_A 186 MLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR--VGSTSDSIKQ 251 (253)
T ss_dssp HHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-------------
T ss_pred HHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC--CCCCcCCcee
Confidence 4678999999999995 454 789999999999999999999999998887642 2223444544
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00033 Score=72.61 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=54.3
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc-cCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~-GiDip~v 156 (494)
..++||.|||++.|.++++.+.+ .+.+..+||+.+..++...+.. .++|+|+|+ .+.+ -+++.++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCcccccC
Confidence 35899999999999999998874 3678889999998877766654 689999997 2223 3567788
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
++||
T Consensus 205 ~~lV 208 (434)
T 2db3_A 205 RFVV 208 (434)
T ss_dssp CEEE
T ss_pred CeEE
Confidence 8877
|
| >3i31_A Heat resistant RNA dependent ATPase; RNA helicase, RNA recognition motif, ATP-binding, helicase, nucleotide-binding; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00026 Score=54.67 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=60.7
Q ss_pred CCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCccccccEEEeecCCcceeEEecCHHHHHHHHhhcCC
Q 011052 275 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQIP 354 (494)
Q Consensus 275 ~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~~ 354 (494)
.++||+++++||+|+.+.-.. ++..-++.++.+.+. +||+|..... |+++|++.+... .-
T Consensus 2 ~~~SLLTGEEGw~Tlkl~G~r------LS~~R~VAlLk~aG~----~iGkI~~~~~----gayaDlr~e~l~------~~ 61 (88)
T 3i31_A 2 AERSLLTGEEGWRTYKATGPR------LSLPRLVALLKGQGL----EVGKVAEAEG----GFYVDLRPEARP------EV 61 (88)
T ss_dssp CCBCTTTCCBSCEEEEEECTT------CCHHHHHHHHHHTTC----CEEEEEEETT----EEEEEECTTCCC------CC
T ss_pred CcccccccCcceEEEEEeccc------ccHHHHHHHHHHccc----ccccEEeccc----eeEEecChHHcc------cc
Confidence 468999999999999997444 788888999887654 8999997543 689999887655 22
Q ss_pred CCCceEeeccCCCcCCCC
Q 011052 355 PGNTISKITKLPALQDDG 372 (494)
Q Consensus 355 ~~~~l~v~~~LP~~~~~~ 372 (494)
.++.+.+.+++|.+.+.+
T Consensus 62 ~~~~~e~A~~v~~~~E~p 79 (88)
T 3i31_A 62 AGLRLEPARRVEGLLEIP 79 (88)
T ss_dssp TTCEEEECCSCCCCC---
T ss_pred ccceehhhhhccccccCC
Confidence 678889999999887754
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0047 Score=66.05 Aligned_cols=75 Identities=12% Similarity=0.139 Sum_probs=53.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEec--hhhhccCCCC-----cccEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT--DVAARGLDIP-----NVDLI 159 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT--~~~~~GiDip-----~v~~V 159 (494)
.++.+|||+++....+++++.+ ...+..-.-+++. ...++.|+...-.||+|| ..+.+|||+| .++.|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~~--~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSRI--SLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTTC--CSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCCEEEEecCHHHHHHHHHhc--CCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 3579999999999999998732 2333333335554 445666643334799998 6999999999 37788
Q ss_pred EecCCCC
Q 011052 160 IHYELPN 166 (494)
Q Consensus 160 I~~~~P~ 166 (494)
|...+|.
T Consensus 467 iI~~lPf 473 (551)
T 3crv_A 467 VIVGIPY 473 (551)
T ss_dssp EEESCCC
T ss_pred EEEcCCC
Confidence 8888775
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0057 Score=60.58 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=83.1
Q ss_pred cccHHHHHHHHHHHhc-cCCcEEEEcCChhhHHHHHHHHh-ccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh
Q 011052 71 ATSKRTILSDLITVYA-KGGKTIVFTQTKRDADEVSLALT-SIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA 148 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~~-~~~~~IVF~~t~~~~~~l~~~L~-~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~ 148 (494)
...|..+|.++|.... .+.++|||++..+..+.+...+. +++...-+.|.....++ +. .+..+.+.+.|....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-AA----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-hc----ccCCceEEEEECCCC
Confidence 4679999999998874 45699999999999999999987 47888889988554332 21 234555555566555
Q ss_pred ccCC-----CCcccEEEecCCCCChhhH-HHHhcccCCCC----CCceEEEecChh
Q 011052 149 RGLD-----IPNVDLIIHYELPNDPETF-VHRSGRTGRAG----KEGTAILMFTSS 194 (494)
Q Consensus 149 ~GiD-----ip~v~~VI~~~~P~~~~~y-~qr~GR~gR~G----~~g~~i~l~~~~ 194 (494)
-|+| +...+.||-||.-+++..= +|.+-|+.|.+ +.-.+|.|++..
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 5675 6788999999999999885 89888888863 334455565544
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0057 Score=61.44 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=52.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~ 155 (494)
...++||.|||++.+.++++.+.+ .+.+..+||+.+..++...+. ..+|+|+|+-. ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 356999999999999999988764 367888999998877666554 46799999632 22345667
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 163 ~~~vI 167 (394)
T 1fuu_A 163 IKMFI 167 (394)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 77777
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.006 Score=63.67 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcCc----------cccccEEEeecCCcceeEEec
Q 011052 275 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAA----------DEIGKIHIIADDRVQGAVFDL 340 (494)
Q Consensus 275 ~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~----------~~ig~i~~~~~~~~~gs~~d~ 340 (494)
+...+...+.+...++++++. ...+++.+++..+|+...|... .-+||.++.+..+..-++++-
T Consensus 372 R~~~~~~f~~g~~~iLv~T~~--~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~ 445 (479)
T 3fmp_B 372 RAAVIERFREGKEKVLVTTNV--CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDS 445 (479)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCcEEEEccc--cccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcC
Confidence 333455566777888998887 6778999999999888776432 126777776654433345443
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.017 Score=61.21 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=60.5
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh------ccCCCCcccEE
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPNVDLI 159 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~------~GiDip~v~~V 159 (494)
..+.+||.+|+++.+++..+.|.. ++.+..+|++.+..++..++..+..+..+||++|+.-- .-++..++.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 457899999999999999999986 78899999999999999999999889999999997422 12333556666
Q ss_pred E
Q 011052 160 I 160 (494)
Q Consensus 160 I 160 (494)
|
T Consensus 144 V 144 (523)
T 1oyw_A 144 A 144 (523)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.017 Score=62.33 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=53.5
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccc--cCCCeeEEEechh
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGF--RQGKFTVLVATDV 146 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~F--r~g~~~iLVaT~~ 146 (494)
..+.+||.+|+++.+++.++.|.. ++.+..+|++++..++..++..+ ..+..+|||+|+.
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 467999999999999999999986 78899999999999999888877 5678999999983
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.011 Score=60.35 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=64.2
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh----ccCCC
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA----RGLDI 153 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~----~GiDi 153 (494)
+.....+.++||.+||++.+.++++.+.+ ++.+..+||+.+..++...++.+..+..+|+|+|+-.- .-++.
T Consensus 58 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~ 137 (414)
T 3oiy_A 58 LWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQ 137 (414)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTT
T ss_pred HHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcc
Confidence 33334668999999999999999999986 56899999999998888888888888899999998322 12455
Q ss_pred CcccEEEe
Q 011052 154 PNVDLIIH 161 (494)
Q Consensus 154 p~v~~VI~ 161 (494)
.++++||.
T Consensus 138 ~~~~~iVi 145 (414)
T 3oiy_A 138 KRFDFVFV 145 (414)
T ss_dssp CCCSEEEE
T ss_pred ccccEEEE
Confidence 67887773
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.016 Score=64.48 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=67.8
Q ss_pred HHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccCCCC
Q 011052 81 LITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLDIP 154 (494)
Q Consensus 81 ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~GiDip 154 (494)
++.....+.++||.+||+..|.++++.+.+ ++.+..+||+++..++..+++.+.+|..+|+|+|+. +...+++.
T Consensus 410 il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~ 489 (780)
T 1gm5_A 410 ILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFK 489 (780)
T ss_dssp HHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCS
T ss_pred HHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhcc
Confidence 344444568999999999999999988874 478999999999999999999999999999999973 44557888
Q ss_pred cccEEEe
Q 011052 155 NVDLIIH 161 (494)
Q Consensus 155 ~v~~VI~ 161 (494)
++.+||.
T Consensus 490 ~l~lVVI 496 (780)
T 1gm5_A 490 NLGLVII 496 (780)
T ss_dssp CCCEEEE
T ss_pred CCceEEe
Confidence 8888874
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.25 Score=51.63 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=51.6
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh-----hcc-C-CCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~-----~~G-i-Dip~ 155 (494)
..++||.|||++.+.++++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+-. ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE----DNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHH----HCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhc----CCCEEEECHHHHHHHHhcCccccccc
Confidence 67899999999999999888874 5778999999876655444433 57899999722 222 3 5667
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787773
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.037 Score=51.98 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=55.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hh-ccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~-~GiDip~v 156 (494)
..++||.|||++.+.++++.+.+ .+.+..++|+.+...+...+.. ..+|+|+|+- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 46799999999999999888874 4678899999998887777665 6789999972 22 34577888
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88773
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.086 Score=53.23 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=52.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hh-ccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~-~GiDip~v~ 157 (494)
.++||.+||++.+.++++.+.+ .+.+..+||+.+..++...+.. ..+|+|+|+- +. ..+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhC----CCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4799999999999999998874 4678899999988877665543 6789999972 22 235677788
Q ss_pred EEEe
Q 011052 158 LIIH 161 (494)
Q Consensus 158 ~VI~ 161 (494)
+||.
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7773
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.015 Score=58.86 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=51.2
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hh-ccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~-~GiDip~ 155 (494)
...++||.|||++.+.++++.+.+ ...+..++++.....+.. .+..+..+|+|+|+- +. ..+++..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQ---KLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHH---HHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 456899999999999999998874 356677788876655443 334457889999962 22 2356667
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777763
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.029 Score=64.87 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=68.3
Q ss_pred ccHHHHH-HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 72 TSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 72 ~~k~~~L-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
.-|.... ..++.....+.++||.+||++.|.++++.+.+ .+.+..+||+++..++...++.++++..+|||+|+-
T Consensus 104 SGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~ 183 (1104)
T 4ddu_A 104 VGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 183 (1104)
T ss_dssp CCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHH
T ss_pred CcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHH
Confidence 3454432 23333345667999999999999999999986 458999999999988888888999888999999973
Q ss_pred hh-c---cCCCCcccEEEe
Q 011052 147 AA-R---GLDIPNVDLIIH 161 (494)
Q Consensus 147 ~~-~---GiDip~v~~VI~ 161 (494)
.- . -+++.++.+||.
T Consensus 184 rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 184 FVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHHSHHHHHTSCCSEEEE
T ss_pred HHHHHHHhhcccCcCEEEE
Confidence 21 1 155677888774
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.00082 Score=72.30 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=48.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhcc---------CceeeecCCCCHHHHHHHHccccCCCeeEEEechhh-----hc--cCC
Q 011052 89 GKTIVFTQTKRDADEVSLALTSI---------IASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----AR--GLD 152 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~~---------~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~-----~~--GiD 152 (494)
.++||.|||++.|.++++.+.+. +.+..++|+.........+ .....+|+|+|+-. .+ ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM---NKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH---HHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHH---hcCCCCEEEECHHHHHHHHHhccccc
Confidence 48999999999999999888741 3466778887765544333 33367899999732 22 335
Q ss_pred CCcccEEE
Q 011052 153 IPNVDLII 160 (494)
Q Consensus 153 ip~v~~VI 160 (494)
+..+++||
T Consensus 173 ~~~~~~lV 180 (579)
T 3sqw_A 173 FRFVDYKV 180 (579)
T ss_dssp CTTCCEEE
T ss_pred cccCCEEE
Confidence 66777766
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.26 Score=49.59 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=53.6
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc-cCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~-GiDip~ 155 (494)
...++||.|||++.+.++++.+.+ .+.+..++|+....++...+.. ..+|+|+|+ .+.+ .++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCccHhh
Confidence 457999999999999999998874 3567888999888877666654 568999996 2233 356677
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 180 ~~~vV 184 (410)
T 2j0s_A 180 IKMLV 184 (410)
T ss_dssp CCEEE
T ss_pred eeEEE
Confidence 88777
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.025 Score=60.16 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=47.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc---------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh-----c--cCC
Q 011052 89 GKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-----R--GLD 152 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~-----~--GiD 152 (494)
.++||.+||++.|.++++.+.+ .+.+..++|+.........+ .....+|+|+|+-.- + ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM---NKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH---HHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHH---hcCCCCEEEECcHHHHHHHHhccccc
Confidence 3899999999999999998874 13467778887765544333 333678999998321 2 234
Q ss_pred CCcccEEE
Q 011052 153 IPNVDLII 160 (494)
Q Consensus 153 ip~v~~VI 160 (494)
+..+.+||
T Consensus 224 ~~~~~~lV 231 (563)
T 3i5x_A 224 FRFVDYKV 231 (563)
T ss_dssp CTTCCEEE
T ss_pred cccceEEE
Confidence 56677766
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.021 Score=57.50 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=52.1
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hh-ccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA-RGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~-~GiDip~v 156 (494)
..++||.|||+..++++++.+.+ .+.+..++|+.........+. ...+|+|+|+- +. ...++.++
T Consensus 89 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~T~~~l~~~~~~~~~~~~~~ 164 (400)
T 1s2m_A 89 KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLN----ETVHILVGTPGRVLDLASRKVADLSDC 164 (400)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCCTTC
T ss_pred CccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhc----CCCCEEEEchHHHHHHHHhCCcccccC
Confidence 45899999999999999988874 467888899988766544433 36789999962 22 33567778
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 165 ~~vIi 169 (400)
T 1s2m_A 165 SLFIM 169 (400)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88773
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.12 Score=47.66 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=47.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh------hhccCCCCcc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~------~~~GiDip~v 156 (494)
...++||.+||++.+.++++.+.+ .+.+..++|+.+..++...+.. ..+|+|+|+- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999999998875 4678889998877666555543 5789999972 1224556666
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
++||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 6665
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.3 Score=45.86 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=51.4
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~v~ 157 (494)
.++||.|||++.+.++++.+.+ .+.+..++|+.+..++...+.. ..+|+|+|+-. ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM----GCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSS----CCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCC----CCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 5899999999999999988874 3567888999887766555543 67899999821 2235677788
Q ss_pred EEE
Q 011052 158 LII 160 (494)
Q Consensus 158 ~VI 160 (494)
+||
T Consensus 177 ~lV 179 (253)
T 1wrb_A 177 YIV 179 (253)
T ss_dssp EEE
T ss_pred EEE
Confidence 777
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.16 Score=59.02 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=66.1
Q ss_pred HHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-hhhccCCCCcc
Q 011052 83 TVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-VAARGLDIPNV 156 (494)
Q Consensus 83 ~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-~~~~GiDip~v 156 (494)
.....+.+++|.|||+..|++.++.+.+ .+.+..+++..+..++..+++.+.+|.++|+|+|. .+...+.+.++
T Consensus 647 ~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l 726 (1151)
T 2eyq_A 647 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 726 (1151)
T ss_dssp HHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSE
T ss_pred HHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccccc
Confidence 3344567999999999999999998874 35688899999999999999999999999999995 55556788888
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
.+||.
T Consensus 727 ~lvIi 731 (1151)
T 2eyq_A 727 GLLIV 731 (1151)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 88773
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.26 Score=46.44 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=52.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hh--ccCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AA--RGLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~--~GiDip~ 155 (494)
..++||.|||++.+.++++.+.+ .+.+..++|+.+...+...+.. ..+|+|+|+- +. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK----KPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT----CCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCcCccc
Confidence 35799999999999999988763 4678899999988776665543 6789999972 11 3456667
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 187 ~~~lV 191 (249)
T 3ber_A 187 LKYLV 191 (249)
T ss_dssp CCEEE
T ss_pred cCEEE
Confidence 77666
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=93.47 E-value=0.18 Score=45.60 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=52.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----h-hccCCCCccc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPNVD 157 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~-~~GiDip~v~ 157 (494)
...++||.|||++.+.++++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- + ...+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcchhhce
Confidence 346899999999999999999885 3678889998877665555543 5789999972 1 2235566777
Q ss_pred EEE
Q 011052 158 LII 160 (494)
Q Consensus 158 ~VI 160 (494)
+||
T Consensus 147 ~iV 149 (207)
T 2gxq_A 147 VAV 149 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.2 Score=46.52 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=51.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~ 155 (494)
..++||.|||++.++++++.+.+ .+.+..++|+.+..++...++ ..+|+|+|+-. ...+++.+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-----SCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECHHHHHHHHhcCCccccc
Confidence 46899999999999999998874 367888999998877766553 47899999832 12345566
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 167 ~~~lV 171 (230)
T 2oxc_A 167 IRLFI 171 (230)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66655
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.31 E-value=0.23 Score=45.48 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=51.1
Q ss_pred CcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~v 156 (494)
.++||.|||++.++++++.+.+ .+.+..+||+.+..++...+. ++..+|+|+|+-. ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 4899999999999999888764 467889999998877665543 3456899999731 223456666
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
++||
T Consensus 160 ~~lV 163 (220)
T 1t6n_A 160 KHFI 163 (220)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6666
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.25 Score=44.60 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=50.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhc-cCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~-GiDip~ 155 (494)
..++||.|||++.++++++.+.+ .+.+..++|+.+..+....+. ...+|+|+|+- +.. -+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLD----DTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcC----CCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 45899999999999999988863 356888999988776655443 36789999972 222 245566
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 147 ~~~lV 151 (206)
T 1vec_A 147 VQMIV 151 (206)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 66666
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.32 Score=46.22 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=52.8
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc--cCCCC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR--GLDIP 154 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~--GiDip 154 (494)
.+.++||.+||++.|+++++.+++ ...+..++|+.....+...+.. ..+|+|+|+ .+.. .+++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN----GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC----CCCEEEEcHHHHHHHHHccCCcccc
Confidence 356899999999999999998875 3567788999887776655544 478999996 2222 35667
Q ss_pred cccEEEe
Q 011052 155 NVDLIIH 161 (494)
Q Consensus 155 ~v~~VI~ 161 (494)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777663
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.27 Score=56.51 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=57.4
Q ss_pred ccCCcEEEEcCChhhHHHHHHHHhc-----cC----ceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhccCC-CC
Q 011052 86 AKGGKTIVFTQTKRDADEVSLALTS-----II----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARGLD-IP 154 (494)
Q Consensus 86 ~~~~~~IVF~~t~~~~~~l~~~L~~-----~~----~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~GiD-ip 154 (494)
..+.++||.+||++.|.++++.+++ .+ .+..+||+.+..++.+.++.+++ .+|+|+|+- +..-+. +.
T Consensus 97 ~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 97 LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC
T ss_pred hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc
Confidence 4567999999999999999998874 24 78899999999998888888877 899999972 222222 55
Q ss_pred cccEEE
Q 011052 155 NVDLII 160 (494)
Q Consensus 155 ~v~~VI 160 (494)
++++||
T Consensus 175 ~l~~lV 180 (1054)
T 1gku_B 175 HFDFIF 180 (1054)
T ss_dssp CCSEEE
T ss_pred cCCEEE
Confidence 777777
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.70 E-value=0.68 Score=42.77 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=41.4
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+.++||.|||++.+.++++.+.+ .+.+..+||+.+.......+ ...+|+|+|+
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 356899999999999999998874 26788899998766555444 2578999997
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=1.1 Score=41.53 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=44.7
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech-----hhhc-cCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD-----VAAR-GLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~-----~~~~-GiDip~ 155 (494)
...++||.|||++.+.++++.+.+ .+.+..++|+.+.... .+.+..+..+|+|+|+ .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 346999999999999999998874 3567778887654433 3344556689999995 2233 356677
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887773
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=91.37 E-value=0.78 Score=41.87 Aligned_cols=84 Identities=17% Similarity=0.171 Sum_probs=49.5
Q ss_pred ccHHHH-HHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEE
Q 011052 72 TSKRTI-LSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 72 ~~k~~~-L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV 142 (494)
..|... +..++... ....++||.|||++.+.++++.+.+ .+.+..++|+.+..++...+. ..+|+|
T Consensus 62 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv 136 (224)
T 1qde_A 62 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVV 136 (224)
T ss_dssp SSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-----TCSEEE
T ss_pred CcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-----CCCEEE
Confidence 455543 33344433 2346899999999999999988864 467888999877665544332 278999
Q ss_pred echhh------hccCCCCcccEEE
Q 011052 143 ATDVA------ARGLDIPNVDLII 160 (494)
Q Consensus 143 aT~~~------~~GiDip~v~~VI 160 (494)
+|+-. ...+++..+++||
T Consensus 137 ~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 137 GTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp ECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred ECHHHHHHHHHhCCcchhhCcEEE
Confidence 99732 2344556666665
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=91.21 E-value=0.28 Score=44.91 Aligned_cols=69 Identities=13% Similarity=0.256 Sum_probs=46.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc---------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhc-cCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS---------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR-GLD 152 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~---------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~-GiD 152 (494)
..++||.|||++.++++++.+.+ .+.+..++|+.+..++ .+.++ ...+|+|+|+- +.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLN-VQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCS-SCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcC-CCCCEEEeCHHHHHHHHHcCCCC
Confidence 46899999999999999988763 3567788888755433 22232 36789999962 222 345
Q ss_pred CCcccEEE
Q 011052 153 IPNVDLII 160 (494)
Q Consensus 153 ip~v~~VI 160 (494)
+..+++||
T Consensus 148 ~~~~~~lV 155 (219)
T 1q0u_A 148 VHTAHILV 155 (219)
T ss_dssp GGGCCEEE
T ss_pred cCcceEEE
Confidence 55666555
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=90.94 E-value=0.42 Score=50.05 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=48.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh-----hcc-C-CCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----ARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~-----~~G-i-Dip~ 155 (494)
..++||.|||++.+.++++.+.+ .+.+..+||+.+...+...+.. ..+|+|+|+-. ..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHH----HCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhC----CCCEEEECHHHHHHHHHhCccccccc
Confidence 57899999999999999988874 5788999999877665444433 57899999732 222 3 5677
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 887773
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=90.11 E-value=0.72 Score=45.76 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=53.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~ 155 (494)
..++||.|||++.++++++.+.+ .+.+..++|+.+..+....+. ++..+|+|+|+-. ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH---HSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh---cCCCCEEEECHHHHHHHHHcCCccccc
Confidence 45899999999999999888764 467889999998877665554 3457899999732 23356778
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 887773
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.37 E-value=0.25 Score=46.15 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=46.9
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhc---cCCCC
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AAR---GLDIP 154 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~---GiDip 154 (494)
+.++||.+||++.+.++++.+.+ .+.+..+|++.... ...........+|+|+|+- +.. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 45899999999999999998875 35566666653221 1122334557889999962 212 35666
Q ss_pred cccEEEe
Q 011052 155 NVDLIIH 161 (494)
Q Consensus 155 ~v~~VI~ 161 (494)
++.+||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 7776663
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=88.96 E-value=0.73 Score=51.16 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=48.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-C-CCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G-i-Dip~ 155 (494)
..++||.|||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHH----TCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC----CCCEEEEchHHHHHHHHhcccccccc
Confidence 67999999999999999888764 5789999999877765444433 5789999973 2222 3 5667
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788773
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=88.68 E-value=0.064 Score=53.99 Aligned_cols=65 Identities=6% Similarity=-0.001 Sum_probs=44.2
Q ss_pred CcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh-------ccCCCCc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA-------RGLDIPN 155 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~-------~GiDip~ 155 (494)
.++||.+||++.+.++++.+.+ .+.+...+++.... .......+|+|+|+-.- ..+++.+
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~ 168 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKK 168 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCSSCGGG
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchh-------hhhcCCCCEEEECchHHHHHHHhcCCcChhh
Confidence 4899999999999999888764 24556666654321 12234568999997321 3456677
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 169 ~~~iV 173 (412)
T 3fht_A 169 IKVFV 173 (412)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 88877
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=88.64 E-value=1.5 Score=42.16 Aligned_cols=69 Identities=17% Similarity=0.262 Sum_probs=52.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh-----h-ccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA-----A-RGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~-----~-~GiDip~ 155 (494)
...++||.||+++.++++++.+.+ ...+..+||+.+..++...+. ..+|+|+|+-. . .-+++.+
T Consensus 55 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 129 (337)
T 2z0m_A 55 LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-----NADIVVATPGRLLDLWSKGVIDLSS 129 (337)
T ss_dssp HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-----TCSEEEECHHHHHHHHHTTSCCGGG
T ss_pred hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-----CCCEEEECHHHHHHHHHcCCcchhh
Confidence 367999999999999999999874 357888999998877655543 36799999732 2 2345677
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 130 ~~~iV 134 (337)
T 2z0m_A 130 FEIVI 134 (337)
T ss_dssp CSEEE
T ss_pred CcEEE
Confidence 77776
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=88.11 E-value=1.7 Score=43.86 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=53.5
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhcc--C---ceeeecCCCCHHHHHHHHccccCCCeeEEEechhhh------ccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTSI--I---ASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAA------RGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~~--~---~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~------~GiDip~ 155 (494)
...++||.||++..+.+.++.+.+. + .+..+||+....++..... ..+|+|+|.-.- .-+...+
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5689999999999999999998863 3 7889999999887766554 467999996321 2356677
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 126 ~~~vI 130 (494)
T 1wp9_A 126 VSLIV 130 (494)
T ss_dssp CSEEE
T ss_pred ceEEE
Confidence 88777
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=86.37 E-value=3 Score=40.59 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=51.6
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~ 155 (494)
+..++||.|||+..++++++.+.+ .+.+..++|+.........+. ..+|+|+|+-. ...+++.+
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 356899999999999999998874 356788899988776655554 46799999732 12355677
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 148 ~~~iI 152 (367)
T 1hv8_A 148 VKYFI 152 (367)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 77777
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.11 E-value=1.3 Score=42.86 Aligned_cols=66 Identities=6% Similarity=0.021 Sum_probs=46.6
Q ss_pred CcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------h-ccCCCCc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------A-RGLDIPN 155 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~-~GiDip~ 155 (494)
.++||.|||++.|.+++..+.. .+.+..++++.....+ .....+|||+|+-. . ..+++.+
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 3799999999999999888763 2456677776543221 13456899999832 1 3577888
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+.+||.
T Consensus 236 l~~lVl 241 (300)
T 3fmo_B 236 IKVFVL 241 (300)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888774
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=83.81 E-value=1.8 Score=48.09 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=44.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+.+++|.|+|++.|.++++.+.. ++.+.++.|+++..+|.... .++|+|+|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 457899999999999999988763 47899999999987665543 478999998
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=83.40 E-value=1.2 Score=50.56 Aligned_cols=69 Identities=12% Similarity=0.145 Sum_probs=47.4
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-C-CCCc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPN 155 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G-i-Dip~ 155 (494)
..++||.|||+..+.+++..+.+ .+.+..+||+.+...+...+.. ..+|+|+|+- +..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----DSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH----HCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc----CCCEEEecHHHHHHHHHcCccccccC
Confidence 57899999999999999888874 5789999999876654444333 5789999972 2222 3 5567
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 372 ~~liV 376 (936)
T 4a2w_A 372 FTLMI 376 (936)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 78777
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.33 E-value=0.65 Score=41.89 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=36.2
Q ss_pred CCcEEEEcCChhhHHH-HHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 88 GGKTIVFTQTKRDADE-VSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~-l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
..++||+||++..+++ +.+.+.. .+.+..++|+.....+...+.. ..+|+|+|+-
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVK----SCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHHH----HCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhcc----CCCEEEECHH
Confidence 5799999999999888 6555553 4678888887654332222222 5779999973
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=82.74 E-value=2.2 Score=47.32 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=44.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.+..++|.|+|++.|.++++.+.. ++.+.++.|+++..+|.... .++|+|+|+
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 457899999999999999988763 57899999999988776543 478999997
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=81.61 E-value=1.8 Score=46.83 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=50.0
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----hhcc-C-CCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----AARG-L-DIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~~~G-i-Dip~v 156 (494)
.++||.+||+..+.+.++.+.+ ++.+..+||+.+...+...+.. ..+|+|+|+- +..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~----~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE----NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHH----TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhcc----CCCEEEECHHHHHHHHhcCcccccccc
Confidence 7899999999999999888874 4778899999865443333322 5789999972 2222 3 56777
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 87773
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 494 | ||||
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 5e-34 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 2e-28 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 1e-25 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 3e-24 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 3e-24 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 4e-24 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 2e-22 | |
| d2rb4a1 | 168 | c.37.1.19 (A:307-474) ATP-dependent RNA helicase D | 2e-19 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 6e-19 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-18 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 2e-16 | |
| d1s2ma2 | 171 | c.37.1.19 (A:252-422) Putative ATP-dependent RNA h | 2e-16 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 5e-16 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 2e-15 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 2e-15 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 2e-15 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 3e-15 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 1e-14 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 2e-14 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 3e-14 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 3e-14 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 3e-14 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 6e-14 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 6e-14 | |
| d2eyqa5 | 211 | c.37.1.19 (A:779-989) Transcription-repair couplin | 3e-12 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 5e-12 | |
| d1gm5a4 | 206 | c.37.1.19 (A:550-755) RecG helicase domain {Thermo | 8e-08 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-07 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 6e-06 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 1e-04 | |
| d2e29a1 | 85 | d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 | 3e-04 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 0.001 |
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 127 bits (321), Expect = 5e-34
Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 21/180 (11%)
Query: 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGD 120
I+ A+STT + KGG+ ++F +K+ DE++ L ++ I + A +
Sbjct: 11 IEEVALSTTG-EIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRG 69
Query: 121 ISQHQR----------ERTLNGFRQGKFTVLVATDVAARG---LDIPNVDLIIHYELPND 167
+ L G F ++ + + I LP D
Sbjct: 70 LDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQD 129
Query: 168 PETFVHRSGRTGRAGKEGTAILMFTSSQRR-TVRSLE----RDVGCKFEFVSPPVVEDVL 222
+ R GRTGR GK G + + S D GC + ++P L
Sbjct: 130 AVSRTQRRGRTGR-GKPGIYRFVAPGERPSGMFDSSVLCECYDAGCAWYELTPAETTVRL 188
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 110 bits (276), Expect = 2e-28
Identities = 33/203 (16%), Positives = 64/203 (31%), Gaps = 21/203 (10%)
Query: 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGF 133
+ LS ++ G I++ +T +A+E+ +L I ++ F
Sbjct: 13 SISTLSSILE--KLGTGGIIYARTGEEAEEIYESL-----KNKFRIGIVTATKKGDYEKF 65
Query: 134 RQGKFTVLVAT----DVAARGLDIP-NVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAI 188
+G+ L+ T RGLD+P + + P+ F + +
Sbjct: 66 VEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKL 121
Query: 189 LMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTA 248
L + + L V + V ++L+ + V E P
Sbjct: 122 LAYLYRNVDEIERLLPAVERHID-----EVREILKKVMGKERPQAKDVVVREGEVIFPDL 176
Query: 249 QRLIEEKGTDALAAALAQLSGFS 271
+ I+ G + A G S
Sbjct: 177 RTYIQGSGRTSRLFAGGLTKGAS 199
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 100 bits (250), Expect = 1e-25
Identities = 47/150 (31%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNG 132
K L+DL + ++F T+R +E++ L + A++ D+ Q +R+ +
Sbjct: 14 KYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKE 72
Query: 133 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192
FR G +L++TD+ ARG+D+ V L+I+Y+LP + E ++HR GR GR G++G AI T
Sbjct: 73 FRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 132
Query: 193 SSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222
+ +R LE+ + E + P + +L
Sbjct: 133 NEDVGAMRELEKFYSTQIEEL-PSDIATLL 161
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 99 bits (248), Expect = 3e-24
Identities = 41/136 (30%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADE-VSLALTSIIASEALHGDISQHQR-- 126
K L ++I + K IVFT + A + V+ + I ++ G S+
Sbjct: 143 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRG 202
Query: 127 ------ERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
+ L+ F +G+F VLVAT V GLD+P VDL++ YE + R GRTGR
Sbjct: 203 LSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR 262
Query: 181 AGKEGTAILMFTSSQR 196
G I++ R
Sbjct: 263 HMP-GRVIILMAKGTR 277
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 96.2 bits (238), Expect = 3e-24
Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDI 121
I+ + + L L+ K +VF +TKRD E++ L I
Sbjct: 4 IEQSYVEVNENERFEALCRLLK--NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGD 61
Query: 122 S-QHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGR 180
Q QRE+ + F+Q K +L+ATDV +RG+D+ +++ +I+Y LP +PE+++HR GRTGR
Sbjct: 62 LSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 121
Query: 181 AGKEGTAILMFTSSQRRTVRSLERDVGCKFE 211
AGK+G AI + + + +R +ER + K +
Sbjct: 122 AGKKGKAISIINRREYKKLRYIERAMKLKIK 152
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.5 bits (239), Expect = 4e-24
Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 4/170 (2%)
Query: 55 DEKLAEGIKLYAISTTATS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIA 113
DE EGIK + ++ K L DL + ++F TKR D ++ +
Sbjct: 1 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANF 59
Query: 114 SEA-LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV 172
+ + +HGD+ Q +RE + FR G VL++TDV ARGLD+P V LII+Y+LPN+ E ++
Sbjct: 60 TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYI 119
Query: 173 HRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVL 222
HR GR+GR G++G AI + R +R +E+ + + + P V D++
Sbjct: 120 HRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM-PMNVADLI 168
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 93.0 bits (230), Expect = 2e-22
Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Query: 56 EKLAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASE 115
E L + I+ + +K L +++ + + K I+FT+ +S +
Sbjct: 62 EALRAWEEARRIAFNSKNKIRKLREILERH-RKDKIIIFTRHNELVYRIS----KVFLIP 116
Query: 116 ALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS 175
A+ S+ +RE L GFR G+F +V++ V G+D+P+ ++ + ++ R
Sbjct: 117 AITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRL 176
Query: 176 GRTGRAGKEGTAILMFT 192
GR R K +++
Sbjct: 177 GRILRPSKGKKEAVLYE 193
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 80.9 bits (199), Expect = 6e-19
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 12/138 (8%)
Query: 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDI 121
I+ A+STT + + V KGG+ ++F +K+ DE++ L AL +
Sbjct: 10 IEEVALSTTGEIPFYGKAIPLEVI-KGGRHLIFCHSKKKCDELAAKL------VALGINA 62
Query: 122 SQHQRERTLNGFRQGKFTVLVATDVAARGLDIPN---VDLIIHYELPNDPETFVHRSGRT 178
+ R ++ V+VATD G +D P D + R GRT
Sbjct: 63 VAYYRGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRT 122
Query: 179 GRAGKEGTAILMFTSSQR 196
GR GK G +R
Sbjct: 123 GR-GKPGI-YRFVAPGER 138
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 83.4 bits (205), Expect = 2e-18
Identities = 23/213 (10%), Positives = 50/213 (23%), Gaps = 45/213 (21%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVGNQDEKLAE 60
+ + + +AT P + + +
Sbjct: 112 TDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSG- 170
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHG 119
V GKT+ F + + ++++ L L
Sbjct: 171 --------------------HEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSR 210
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDI-------------------PNVDLII 160
+ + R + +V TD++ G + +I+
Sbjct: 211 KTFDSEYIK----TRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVIL 266
Query: 161 HYELPNDPETFVHRSGRTGRAGKEGTAILMFTS 193
+P + R GR GR K ++
Sbjct: 267 AGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMG 299
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 75.2 bits (184), Expect = 2e-16
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQ 135
++ ++ + +T+V T TK+ A++++ L I LH +I +R + R
Sbjct: 20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRL 79
Query: 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS--GRTGRAGKEGTAILMF 191
GK+ VLV ++ GLDIP V L+ + + RS GRA + ++
Sbjct: 80 GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHVIM 137
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.7 bits (182), Expect = 2e-16
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 59 AEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEAL 117
+GI Y K L+ L + + + I+F + + ++ +
Sbjct: 4 LKGITQYYAFVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYS 62
Query: 118 HGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGR 177
H + Q +R + + FRQGK LV +D+ RG+DI V+++I+++ P ET++HR GR
Sbjct: 63 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGR 122
Query: 178 TGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAE 227
+GR G G AI + + R + +E+++G + + P ++ L AE
Sbjct: 123 SGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAI-PATIDKSLY-VAE 170
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.6 bits (182), Expect = 5e-16
Identities = 41/188 (21%), Positives = 68/188 (36%), Gaps = 46/188 (24%)
Query: 58 LAEGIKL-----YAISTTATSKRTILSDLIT-VYAKGGKTIVFTQTKRDADEVSLALTSI 111
L EG+ +TS+R +L+ A+ G +VF T+R A++ ++ L++I
Sbjct: 4 LVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAI 63
Query: 112 IASEA-------------------------------LHGDISQHQRERTLNGFRQGKFTV 140
A H + QR + FR+G V
Sbjct: 64 TAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKV 123
Query: 141 LVATDVAARGLDIPNVDLIIH-------YELPNDPETFVHRSGRTGRAGK--EGTAILMF 191
+VAT A G+++P +I+ Y + +GR GR G G AI++
Sbjct: 124 VVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 183
Query: 192 TSSQRRTV 199
R
Sbjct: 184 GKRDREIA 191
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 72.0 bits (176), Expect = 2e-15
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 77 ILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLNGFRQ 135
++ + A+G +T+V T R A+E++ L I + LH ++ +R+ + R
Sbjct: 20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL 79
Query: 136 GKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRS--GRTGRAGKEGTAILMF-- 191
G + LV ++ GLDIP V L+ + + RS GRA + +
Sbjct: 80 GHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYA 139
Query: 192 ---TSSQRRTVRSLER 204
+ + +R + R
Sbjct: 140 DRVSEAMQRAIEETNR 155
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.0 bits (178), Expect = 2e-15
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
GF+E + + LPP Q +L SAT+P + +++ K++ +P+ I +
Sbjct: 175 GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 220
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.9 bits (178), Expect = 2e-15
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNI 48
GF+E + I LPP Q +L SATMP+ V +++ K++ NP+ I
Sbjct: 167 GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRI 210
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 72.0 bits (175), Expect = 3e-15
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-IASEALHGDISQHQRERTLN 131
L + +G I++ ++ ++ + L S I++ A H + + R
Sbjct: 16 KPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQE 74
Query: 132 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMF 191
F++ ++VAT G++ PNV ++H+++P + E++ +GR GR G A+L +
Sbjct: 75 KFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 134
Query: 192 TSSQRRTVR 200
+ +R
Sbjct: 135 DPADMAWLR 143
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.7 bits (172), Expect = 1e-14
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
GF++ + I + L Q +L SATMPS V ++++K++ +P+ I +
Sbjct: 171 GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILV 216
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 70.1 bits (170), Expect = 2e-14
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLV 51
F DV+ I +P Q ++FSAT+P +K +KY++NP + ++
Sbjct: 164 FITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 209
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.6 bits (169), Expect = 3e-14
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNID 49
F + +E I+ LP RQ +L+SAT P V+K +L+ P I+
Sbjct: 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEIN 206
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (168), Expect = 3e-14
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 5 GFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNI 48
DV+ I P ++Q M+FSAT+ ++ + RK++ +P+ I
Sbjct: 162 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 205
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.2 bits (168), Expect = 3e-14
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 6 FEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
F+ +E IL LPP QS+LFSAT P VK+ K+L P I+L
Sbjct: 160 FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL 204
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 68.5 bits (167), Expect = 6e-14
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDL 50
ML +GF +DVE IL ++ +LFSATMP + L++KY+ + I
Sbjct: 157 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.4 bits (163), Expect = 6e-14
Identities = 37/166 (22%), Positives = 79/166 (47%), Gaps = 4/166 (2%)
Query: 61 GIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVS-LALTSIIASEALHG 119
G++ Y + K L DL+ V + + ++F ++ + ++ L + + A+H
Sbjct: 1 GLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 59
Query: 120 DISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTG 179
+ Q +R F+ + +LVAT++ RG+DI V++ +Y++P D +T++HR R G
Sbjct: 60 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 119
Query: 180 RAGKEGTAILMFTSSQ-RRTVRSLERDVGCKFEFVSPPV-VEDVLE 223
R G +G AI + + + ++ + + + +E
Sbjct: 120 RFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 165
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 211 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Score = 63.5 bits (154), Expect = 3e-12
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Query: 115 EALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFV-H 173
HG + + + ER +N F +F VLV T + G+DIP + II + +
Sbjct: 61 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 120
Query: 174 RSGRTGRAGKEGTAILMFTSSQRRTVRSLER--------DVGCKFEFVSPPVVEDVLESS 225
GR GR+ + A L+ + T + +R D+G F + D+
Sbjct: 121 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT----HDLEIRG 176
Query: 226 AEQVVATLNGVHPESVEFFTPTAQRLIEE 254
A +++ E++ F L+E
Sbjct: 177 AGELLGEEQSGSMETIGF--SLYMELLEN 203
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 63.4 bits (153), Expect = 5e-12
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 6 FEEDVELILENL----PPKRQSMLFSATMPSWVKKLSRKYLDNPLNIDLVG 52
FE + I+E RQ+++FSAT P ++KL+ +L N + + VG
Sbjct: 189 FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMT-VG 238
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Score = 50.6 bits (120), Expect = 8e-08
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 117 LHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPET-FVHRS 175
+HG +SQ +++R + F +G++ +LV+T V G+D+P ++++
Sbjct: 70 MHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLR 129
Query: 176 GRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEF 212
GR GR G+E L+ + L F
Sbjct: 130 GRVGRGGQEAYCFLVVGDVGEEAMERLRFFTLNTDGF 166
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 50.7 bits (120), Expect = 1e-07
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPLNID 49
+ +GF D++ + M+ +AT K + L LN D
Sbjct: 185 LHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL---LNFD 230
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 45.7 bits (108), Expect = 6e-06
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 23/125 (18%)
Query: 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146
T F + R A+ ++ +L + L+ + + +Q K ++ATD+
Sbjct: 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQKKPDFILATDI 91
Query: 147 AARGLDIPNV------------------DLIIHYELPNDPETFVHRSGRTGRAGKEGTAI 188
A G ++ + I L + R GR GR
Sbjct: 92 AEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDS 151
Query: 189 LMFTS 193
++
Sbjct: 152 YYYSE 156
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 13 ILENLPPKRQSMLFSATMPSWVKK--LSRKYLDNPL 46
L P M +AT ++ + L++PL
Sbjct: 167 QLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPL 202
|
| >d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: GUCT domain domain: ATP-dependent RNA helicase DDX50 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (87), Expect = 3e-04
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 276 SRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADE-IGKIHIIADDRVQ 334
RSLI ++G+VT+ L L+ + A I ++ ++ +
Sbjct: 3 PRSLITSDKGFVTMTLE----SLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--M 56
Query: 335 GAVFDLPEEIAKELLNK 351
G FD+P ++ L +
Sbjct: 57 GVCFDVPTTESERLQAE 73
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 37.8 bits (86), Expect = 0.001
Identities = 5/64 (7%), Positives = 19/64 (29%), Gaps = 1/64 (1%)
Query: 1 MLAVGFEEDVELILENLPPKRQSMLFSATMPSWVKKLSRKYLDNPL-NIDLVGNQDEKLA 59
+ + + + +A+ S +K+ + + +I+ +
Sbjct: 137 AVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVR 196
Query: 60 EGIK 63
+K
Sbjct: 197 PYVK 200
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.97 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.97 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.97 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.97 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.97 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.96 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.96 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.93 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.93 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.88 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.83 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.81 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.79 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.79 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.74 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.73 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.73 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.58 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.4 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.37 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.37 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 99.24 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 98.58 | |
| d2e29a1 | 85 | ATP-dependent RNA helicase DDX50 {Human (Homo sapi | 98.38 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 97.15 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 96.87 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 95.23 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 94.52 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 94.01 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 92.71 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 92.24 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 91.9 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 91.84 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 87.95 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 87.35 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 85.25 |
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.1e-31 Score=243.75 Aligned_cols=158 Identities=35% Similarity=0.588 Sum_probs=147.0
Q ss_pred ccccceEEEEEEcCcc-cHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHcccc
Q 011052 57 KLAEGIKLYAISTTAT-SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFR 134 (494)
Q Consensus 57 ~~~~~i~~~~~~~~~~-~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr 134 (494)
.+..+++|+|+.++.. .|.+.|.++++.. +..++||||++++.|+.+++.|.. ++.+..+||++++.+|..+++.|+
T Consensus 3 ~tl~~i~q~~v~v~~~~~K~~~L~~ll~~~-~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk 81 (168)
T d2j0sa2 3 LTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 81 (168)
T ss_dssp CSCTTEEEEEEEESSTTHHHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEecChHHHHHHHHHHHHhC-CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHh
Confidence 3568899999888764 5999999999876 557999999999999999999986 789999999999999999999999
Q ss_pred CCCeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecC
Q 011052 135 QGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVS 214 (494)
Q Consensus 135 ~g~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~ 214 (494)
+|+.+||||||+++||+|+|+|++|||||+|++++.|+||+|||||.|+.|.+++|+.+.|...++.|++.++.++++++
T Consensus 82 ~g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~i~e~p 161 (168)
T d2j0sa2 82 SGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 161 (168)
T ss_dssp HTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred cCCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888764
Q ss_pred C
Q 011052 215 P 215 (494)
Q Consensus 215 ~ 215 (494)
.
T Consensus 162 ~ 162 (168)
T d2j0sa2 162 M 162 (168)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.2e-31 Score=242.46 Aligned_cols=158 Identities=27% Similarity=0.496 Sum_probs=149.4
Q ss_pred cccceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCC
Q 011052 58 LAEGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQG 136 (494)
Q Consensus 58 ~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g 136 (494)
+..++.|+|+.++..+|...|.++++.. +..++||||+|++.|+.++..|.. ++.+..+||+|++.+|.++++.|+++
T Consensus 3 tl~~i~q~yi~v~~~~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~ 81 (171)
T d1s2ma2 3 TLKGITQYYAFVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 81 (171)
T ss_dssp BCTTEEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CccceEEEEEEcCHHHHHHHHHHHHHhC-CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccC
Confidence 4578999999999999999999999876 568999999999999999999986 89999999999999999999999999
Q ss_pred CeeEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCCC
Q 011052 137 KFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPP 216 (494)
Q Consensus 137 ~~~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~p 216 (494)
..+|||||+++++|+|+|++++|||||+|++++.|+||+||+||.|+.|.+++|+++.|...++.+++.++.+++.++..
T Consensus 82 ~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~~~~~p~~ 161 (171)
T d1s2ma2 82 KVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 161 (171)
T ss_dssp SSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred ccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776543
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8.2e-32 Score=243.09 Aligned_cols=153 Identities=31% Similarity=0.570 Sum_probs=137.6
Q ss_pred eEEEEEEcCc-ccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCee
Q 011052 62 IKLYAISTTA-TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFT 139 (494)
Q Consensus 62 i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~ 139 (494)
|+|+|+.+.. +.|.+.|.++++.. +..++||||+|+..++.+++.|.. ++.+..+||+|++.+|..+++.|+.++.+
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~-~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~ 79 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 79 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhC-CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccc
Confidence 4677887754 56999999999876 568999999999999999999986 78999999999999999999999999999
Q ss_pred EEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceecCC
Q 011052 140 VLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSP 215 (494)
Q Consensus 140 iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~~~ 215 (494)
||||||+++||+|+|+|++|||||+|++++.|+||+|||||.|+.|.|++|+++.|...++.|++.++.+++.++.
T Consensus 80 iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~~~~ip~ 155 (162)
T d1fuka_ 80 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 155 (162)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred eeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCcCCCCCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887654
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=3.2e-31 Score=237.50 Aligned_cols=152 Identities=36% Similarity=0.616 Sum_probs=143.6
Q ss_pred cceEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCe
Q 011052 60 EGIKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF 138 (494)
Q Consensus 60 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~ 138 (494)
.+|+|+|+.+...+|.+.|.++++. .+.++||||+|++.|+.++..|+. ++.+..+|+++++.+|..++++|++++.
T Consensus 2 ~nI~~~~i~v~~~~K~~~L~~ll~~--~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~ 79 (155)
T d1hv8a2 2 ANIEQSYVEVNENERFEALCRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKI 79 (155)
T ss_dssp SSSEEEEEECCGGGHHHHHHHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSS
T ss_pred CCeEEEEEEeChHHHHHHHHHHHcc--CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccc
Confidence 5789999999999999999998865 457999999999999999999986 7899999999999999999999999999
Q ss_pred eEEEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHHHHhCCCceec
Q 011052 139 TVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 139 ~iLVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le~~~~~~~~~~ 213 (494)
+|||||+++++|+|+|++++|||||+|+++..|+||+||+||.|++|.+++++++.|...++.|++.++.+++++
T Consensus 80 ~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~i~~l 154 (155)
T d1hv8a2 80 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 154 (155)
T ss_dssp SEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred eeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887654
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.9e-29 Score=228.77 Aligned_cols=151 Identities=23% Similarity=0.454 Sum_probs=141.4
Q ss_pred eEEEEEEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeE
Q 011052 62 IKLYAISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 62 i~~~~~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~i 140 (494)
++|+|+.+..++|.+.|.++++.+ ...++||||++++.++.+++.|.+ ++.+..+||+|++.+|..++++|++|+++|
T Consensus 2 l~q~~v~~~~~~K~~~L~~ll~~~-~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~i 80 (168)
T d1t5ia_ 2 LQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRI 80 (168)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSE
T ss_pred cEEEEEEeChHHHHHHHHHHHHhC-CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhcccccee
Confidence 689999999999999999999887 457999999999999999999986 789999999999999999999999999999
Q ss_pred EEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChh-hHHHHHHHHHHhCCCceec
Q 011052 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSS-QRRTVRSLERDVGCKFEFV 213 (494)
Q Consensus 141 LVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~-e~~~l~~le~~~~~~~~~~ 213 (494)
||||+++++|+|+|.+++||+||+|.+++.|+||+||+||.|++|.|++|+++. +...+..+++.+...++.+
T Consensus 81 Lv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~~~el 154 (168)
T d1t5ia_ 81 LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISEL 154 (168)
T ss_dssp EEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEEC
T ss_pred eeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcCCcccC
Confidence 999999999999999999999999999999999999999999999999999775 5678888999998887765
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.6e-28 Score=227.24 Aligned_cols=136 Identities=21% Similarity=0.431 Sum_probs=125.3
Q ss_pred EEcCcccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 67 ISTTATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 67 ~~~~~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
..+...+|.+.|..+++.+ +..++||||+|++.|+.++..|.. ++.+..+||+|++.+|.++++.|++|+++|||||+
T Consensus 10 ~v~~~~~k~~~L~~~l~~~-~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd 88 (200)
T d1oywa3 10 MLMEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 88 (200)
T ss_dssp EEEECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred EEEcCCcHHHHHHHHHHhc-CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEEEecc
Confidence 3344567888888888775 467999999999999999999986 78999999999999999999999999999999999
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHH
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le 203 (494)
++++|||+|+|++||||++|.++++|+||+|||||.|++|.+++|+++.|...++.+.
T Consensus 89 ~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~i 146 (200)
T d1oywa3 89 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 146 (200)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred hhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999988777653
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.93 E-value=9.7e-26 Score=206.02 Aligned_cols=121 Identities=25% Similarity=0.425 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCC
Q 011052 74 KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLD 152 (494)
Q Consensus 74 k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiD 152 (494)
..++|..+.+....+.++||||+|++.++.++..|.+ ++.+..+||+|++.+|.+++++|++|+++|||||++++||||
T Consensus 17 vd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiD 96 (181)
T d1t5la2 17 IDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLD 96 (181)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCC
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCC
Confidence 3456666666656678999999999999999999986 899999999999999999999999999999999999999999
Q ss_pred CCcccEEEecCCCC-----ChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 153 IPNVDLIIHYELPN-----DPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 153 ip~v~~VI~~~~P~-----~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
+|+|++|||||+|. +.++|+||+|||||.|. +.+++++....
T Consensus 97 ip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~~~ 143 (181)
T d1t5la2 97 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN-GHVIMYADTIT 143 (181)
T ss_dssp CTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCC
T ss_pred CCCCCEEEEecCCcccccccHHHHHHHHHhhccccC-ceeEeecchhh
Confidence 99999999999996 68899999999999985 44444444333
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=1.2e-25 Score=202.93 Aligned_cols=129 Identities=23% Similarity=0.396 Sum_probs=111.9
Q ss_pred cHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccC
Q 011052 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (494)
Q Consensus 73 ~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~Gi 151 (494)
...+++..+.+...++.++||||+|++.|+.+++.|.. ++.+..+||+|++.+|++++++|++|+++|||||+++++||
T Consensus 16 qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~Gi 95 (174)
T d1c4oa2 16 QILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGL 95 (174)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTC
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeec
Confidence 34456666666666788999999999999999999996 89999999999999999999999999999999999999999
Q ss_pred CCCcccEEEecCCCC-----ChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHH
Q 011052 152 DIPNVDLIIHYELPN-----DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSL 202 (494)
Q Consensus 152 Dip~v~~VI~~~~P~-----~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~l 202 (494)
|+|+|++||+|++|. +.++|+||+||+||.+ .|.+++++......+.+.+
T Consensus 96 Dip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~-~g~~~~~~~~~~~~~~~~i 150 (174)
T d1c4oa2 96 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAI 150 (174)
T ss_dssp CCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHhhhhhhcC-CCeeEEeecCCCHHHHHHH
Confidence 999999999999765 5688999999999987 4787777766555444444
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.88 E-value=6e-24 Score=185.50 Aligned_cols=99 Identities=29% Similarity=0.480 Sum_probs=90.3
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecC--
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYE-- 163 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~-- 163 (494)
+.+++||||+|++.|+.|++.|++ ++.+..+|++|+ ++.|++++.+||||||++++||| |++++||||+
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~-------~~~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~ 105 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD-------VSVIPTNGDVVVVATDALMTGFT-GDFDSVIDCNTS 105 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCC-------SCCCTTSSCEEEEESSSSCSSSC-CCBSEEEECSEE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccch-------hhhhhhhhcceeehhHHHHhccc-cccceEEEEEec
Confidence 568999999999999999999986 899999999998 45689999999999999999999 9999999855
Q ss_pred --CCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 164 --LPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 164 --~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
+|.++++|+||+||||| |++|. ++|+++.|
T Consensus 106 ~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 106 DGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp TTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred CCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 69999999999999999 99995 77887765
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.83 E-value=4.2e-21 Score=187.87 Aligned_cols=122 Identities=34% Similarity=0.550 Sum_probs=103.8
Q ss_pred cHHHHHHHHHHHh---ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecC--------CCCHHHHHHHHccccCCCeeE
Q 011052 73 SKRTILSDLITVY---AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHG--------DISQHQRERTLNGFRQGKFTV 140 (494)
Q Consensus 73 ~k~~~L~~ll~~~---~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg--------~~~~~~R~~~l~~Fr~g~~~i 140 (494)
.|.+.|.++|... .++.++||||++++.++.+++.|.+ ++++..+|| ++++.+|..+++.|++|+++|
T Consensus 143 pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~v 222 (286)
T d1wp9a2 143 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 222 (286)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred cHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcE
Confidence 4666666666543 4567999999999999999999986 677777755 577778999999999999999
Q ss_pred EEechhhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 141 LVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 141 LVaT~~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
||||+++++|||+|+|++||+||+|+++..|+||+||+||.+ +|.+++|+++..
T Consensus 223 Lv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~-~~~~~~l~~~~~ 276 (286)
T d1wp9a2 223 LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGT 276 (286)
T ss_dssp EEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-CSEEEEEEETTS
T ss_pred EEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC-CCEEEEEEeCCC
Confidence 999999999999999999999999999999999999999975 788888877653
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.81 E-value=3.4e-20 Score=172.10 Aligned_cols=119 Identities=28% Similarity=0.537 Sum_probs=102.7
Q ss_pred HHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhcc-------------------------------CceeeecCCCCHH
Q 011052 76 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSI-------------------------------IASEALHGDISQH 124 (494)
Q Consensus 76 ~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-------------------------------~~~~~lhg~~~~~ 124 (494)
+++.+++ .+++++||||+|++.|+.++..|... ..+.++|++|++.
T Consensus 31 ~l~~~~i---~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~ 107 (201)
T d2p6ra4 31 ELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNG 107 (201)
T ss_dssp HHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHH
T ss_pred HHHHHHH---HcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhh
Confidence 4444443 35689999999999999888887531 1277899999999
Q ss_pred HHHHHHccccCCCeeEEEechhhhccCCCCcccEEEe-------cCCCCChhhHHHHhcccCCCC--CCceEEEecChhh
Q 011052 125 QRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIH-------YELPNDPETFVHRSGRTGRAG--KEGTAILMFTSSQ 195 (494)
Q Consensus 125 ~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~-------~~~P~~~~~y~qr~GR~gR~G--~~g~~i~l~~~~e 195 (494)
+|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|.++.+|+||+|||||.| ..|.+++++.+.+
T Consensus 108 ~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~ 187 (201)
T d2p6ra4 108 QRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 187 (201)
T ss_dssp HHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred hHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCC
Confidence 9999999999999999999999999999999999996 678899999999999999998 4799999988876
Q ss_pred HH
Q 011052 196 RR 197 (494)
Q Consensus 196 ~~ 197 (494)
..
T Consensus 188 ~~ 189 (201)
T d2p6ra4 188 RE 189 (201)
T ss_dssp HH
T ss_pred hH
Confidence 54
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=3.8e-22 Score=191.51 Aligned_cols=122 Identities=18% Similarity=0.322 Sum_probs=104.3
Q ss_pred cccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEec----hh
Q 011052 71 ATSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVAT----DV 146 (494)
Q Consensus 71 ~~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT----~~ 146 (494)
.++|.+.|..++..+ +.++||||+|++.|+.+++.|... +||+|++.+|.+++++|++|+++||||| ++
T Consensus 10 ~~~~~~~l~~~l~~~--~~~~iif~~~~~~~~~l~~~l~~~-----~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v 82 (248)
T d1gkub2 10 NDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGT 82 (248)
T ss_dssp SCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSSHHHHHHHHTSCSEEEEECC----
T ss_pred CchHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHHHHHh-----ccCCCCHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 356777788888754 468999999999999999999753 8999999999999999999999999999 89
Q ss_pred hhccCCCCc-ccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHH
Q 011052 147 AARGLDIPN-VDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 147 ~~~GiDip~-v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le 203 (494)
+++|||+|+ |++|||||+|+ |.||+||+||+|+.+.+++++...+...+..+.
T Consensus 83 ~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~l~ 136 (248)
T d1gkub2 83 LVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLL 136 (248)
T ss_dssp --CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTC
T ss_pred hhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHHHH
Confidence 999999996 99999999995 889999999999999999988887766655543
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=1.2e-20 Score=174.81 Aligned_cols=129 Identities=20% Similarity=0.408 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhccCCcEEEEcCChhhHHH--------HHHHHhc----cCceeeecCCCCHHHHHHHHccccCCCeeEEE
Q 011052 75 RTILSDLITVYAKGGKTIVFTQTKRDADE--------VSLALTS----IIASEALHGDISQHQRERTLNGFRQGKFTVLV 142 (494)
Q Consensus 75 ~~~L~~ll~~~~~~~~~IVF~~t~~~~~~--------l~~~L~~----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLV 142 (494)
..++..+.+.+..+.++-|.||..+..+. .++.|.+ .+.+..+||.|++++|++++++|++|+++|||
T Consensus 16 ~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLV 95 (206)
T d1gm5a4 16 NEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILV 95 (206)
T ss_dssp HHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEE
Confidence 34455555566777899999997765443 3344432 35688999999999999999999999999999
Q ss_pred echhhhccCCCCcccEEEecCCCC-ChhhHHHHhcccCCCCCCceEEEecChhhHHHHHHHH
Q 011052 143 ATDVAARGLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLE 203 (494)
Q Consensus 143 aT~~~~~GiDip~v~~VI~~~~P~-~~~~y~qr~GR~gR~G~~g~~i~l~~~~e~~~l~~le 203 (494)
||+++++|||+|++++||+++.|. ..++|.|..||+||.+.+|.|++++.+......+.++
T Consensus 96 aTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl~ 157 (206)
T d1gm5a4 96 STTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLR 157 (206)
T ss_dssp CSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHH
T ss_pred EehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhhh
Confidence 999999999999999999999997 6777888899999999999999999876554444443
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.74 E-value=3.4e-19 Score=171.12 Aligned_cols=105 Identities=25% Similarity=0.372 Sum_probs=92.6
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHH----------HHHHccccCCCeeEEEechhhhc---cCC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQR----------ERTLNGFRQGKFTVLVATDVAAR---GLD 152 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R----------~~~l~~Fr~g~~~iLVaT~~~~~---GiD 152 (494)
+++++||||+|++.|++++..|++ ++.+..+|++|+++.| ..+++.|++|+.++||+|+++++ ++|
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giD 114 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFS 114 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECC
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCC
Confidence 468999999999999999999985 7899999999999887 56888999999999999999999 677
Q ss_pred CCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEEecC
Q 011052 153 IPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFT 192 (494)
Q Consensus 153 ip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~ 192 (494)
++.+.+||+|++|.++++|+||+||||| |+.|...++..
T Consensus 115 id~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~ 153 (299)
T d1a1va2 115 LDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAP 153 (299)
T ss_dssp CSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCS
T ss_pred CCcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEec
Confidence 7888899999999999999999999999 88998776544
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=1.4e-17 Score=152.94 Aligned_cols=122 Identities=21% Similarity=0.365 Sum_probs=110.8
Q ss_pred cHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc---cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhc
Q 011052 73 SKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTS---IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAAR 149 (494)
Q Consensus 73 ~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~---~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~ 149 (494)
++..+...+...+..++++-+.||..+.++.+++.+.+ .+.+..+||.|+++++++++++|++|+++|||||.+++.
T Consensus 16 ~~~~i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEv 95 (211)
T d2eyqa5 16 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 95 (211)
T ss_dssp CHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGG
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhh
Confidence 44556667777788899999999999999999999985 468999999999999999999999999999999999999
Q ss_pred cCCCCcccEEEecCCCC-ChhhHHHHhcccCCCCCCceEEEecChh
Q 011052 150 GLDIPNVDLIIHYELPN-DPETFVHRSGRTGRAGKEGTAILMFTSS 194 (494)
Q Consensus 150 GiDip~v~~VI~~~~P~-~~~~y~qr~GR~gR~G~~g~~i~l~~~~ 194 (494)
|||+|+++++|.++.+. ...++.|..||+||.+..+.|++++.+.
T Consensus 96 GiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~ 141 (211)
T d2eyqa5 96 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 141 (211)
T ss_dssp GSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred ccCCCCCcEEEEecchhccccccccccceeeecCccceEEEEecCC
Confidence 99999999999988875 8999999999999999999999998653
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.73 E-value=7.2e-19 Score=162.81 Aligned_cols=108 Identities=25% Similarity=0.449 Sum_probs=98.8
Q ss_pred ccHHHHHHHHHHHhccCCcEEEEcCChhhHHHHHHHHhccCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccC
Q 011052 72 TSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTSIIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGL 151 (494)
Q Consensus 72 ~~k~~~L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~Gi 151 (494)
..|.+.|.++++.+ ++.++||||++++.++.|++.| .+..+||++++.+|+.+++.|++++++|||||+++++|+
T Consensus 78 ~~K~~~l~~ll~~~-~~~k~lvf~~~~~~~~~l~~~l----~~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gi 152 (200)
T d2fwra1 78 KNKIRKLREILERH-RKDKIIIFTRHNELVYRISKVF----LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGI 152 (200)
T ss_dssp SHHHHHHHHHHHHT-SSSCBCCBCSCHHHHHHHHHHT----TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSS
T ss_pred HHHHHHHHHHHHhC-CCCcEEEEeCcHHHHHHHHhhc----CcceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhccc
Confidence 46788888888875 5689999999999999887766 466789999999999999999999999999999999999
Q ss_pred CCCcccEEEecCCCCChhhHHHHhcccCCCCCC
Q 011052 152 DIPNVDLIIHYELPNDPETFVHRSGRTGRAGKE 184 (494)
Q Consensus 152 Dip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~ 184 (494)
|+|.+++||++++|+++..|+||+||++|.+..
T Consensus 153 dl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~ 185 (200)
T d2fwra1 153 DVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 185 (200)
T ss_dssp CSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCC
Confidence 999999999999999999999999999999854
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.58 E-value=1.3e-15 Score=148.62 Aligned_cols=102 Identities=19% Similarity=0.293 Sum_probs=85.8
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEE-----
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLII----- 160 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI----- 160 (494)
..+++||||++++.++.+++.|.+ ++.+..+|+++++.. ...|+++..+++|||+++++|+|++ +++||
T Consensus 177 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~ 251 (305)
T d2bmfa2 177 FKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSE----YIKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRC 251 (305)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHH----GGGGGTSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred hCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHH----HhhhhccchhhhhhhHHHHhcCCCC-ccEEEEcCCc
Confidence 468999999999999999999986 788999999986554 4578889999999999999999994 45554
Q ss_pred -----ecCC----------CCChhhHHHHhcccCCCCCCceEEEecCh
Q 011052 161 -----HYEL----------PNDPETFVHRSGRTGRAGKEGTAILMFTS 193 (494)
Q Consensus 161 -----~~~~----------P~~~~~y~qr~GR~gR~G~~g~~i~l~~~ 193 (494)
+++. |.+.++|+||+||+||.|+.+..+++|..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~~ 299 (305)
T d2bmfa2 252 MKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMG 299 (305)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEECS
T ss_pred eeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEECC
Confidence 3443 56889999999999999988887777654
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.40 E-value=7.2e-13 Score=131.93 Aligned_cols=118 Identities=14% Similarity=0.250 Sum_probs=104.6
Q ss_pred ccHHHHHHHHHHHh--ccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCe---eEEEech
Q 011052 72 TSKRTILSDLITVY--AKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKF---TVLVATD 145 (494)
Q Consensus 72 ~~k~~~L~~ll~~~--~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~---~iLVaT~ 145 (494)
..|..+|..++... .++.|+|||++.+...+.|...|.. ++.+..+||.++..+|..+++.|+++.. -+|++|.
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~ 179 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 179 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecch
Confidence 45888888888654 4567999999999999999999985 8899999999999999999999987643 3788899
Q ss_pred hhhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceEEE
Q 011052 146 VAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAIL 189 (494)
Q Consensus 146 ~~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~ 189 (494)
+++.|||++.+++||.||++|++..+.|++||+.|.|++..+.+
T Consensus 180 agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v 223 (346)
T d1z3ix1 180 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYI 223 (346)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEE
T ss_pred hhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEE
Confidence 99999999999999999999999999999999999997766554
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.37 E-value=1.2e-12 Score=123.95 Aligned_cols=116 Identities=16% Similarity=0.288 Sum_probs=87.1
Q ss_pred ccHHHHHHHHHHHh-ccCCcEEEEcCChhhHHHHHHHHhc--cCceeeecCCCCHHHHHHHHccccCC-CeeEE-Eechh
Q 011052 72 TSKRTILSDLITVY-AKGGKTIVFTQTKRDADEVSLALTS--IIASEALHGDISQHQRERTLNGFRQG-KFTVL-VATDV 146 (494)
Q Consensus 72 ~~k~~~L~~ll~~~-~~~~~~IVF~~t~~~~~~l~~~L~~--~~~~~~lhg~~~~~~R~~~l~~Fr~g-~~~iL-VaT~~ 146 (494)
..|...|.+++... .++.++||||+.....+.+...+.. ++.+..+||++++.+|.+++++|.++ ...+| ++|.+
T Consensus 68 S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~ 147 (244)
T d1z5za1 68 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 147 (244)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred hhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhccccccc
Confidence 46888888887654 4577999999999999999888864 57788899999999999999999765 45655 55588
Q ss_pred hhccCCCCcccEEEecCCCCChhhHHHHhcccCCCCCCceE
Q 011052 147 AARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTA 187 (494)
Q Consensus 147 ~~~GiDip~v~~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~ 187 (494)
++.|+|++.+++||+|++||++..+.|+.||+.|.|++..+
T Consensus 148 ~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v 188 (244)
T d1z5za1 148 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNV 188 (244)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CC
T ss_pred cccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCce
Confidence 99999999999999999999999999999999999965433
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.37 E-value=4.4e-13 Score=130.33 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=79.5
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhhhccCCCCcccEEEecCC--
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL-- 164 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~~~GiDip~v~~VI~~~~-- 164 (494)
.+++||||++..+++.+++.|++ ++.|.+|||.++..+++ +|++++.+||||||+++.|+|+ +|.+||++++
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~~~~~t~~~~~~~~~-~~~~vid~g~~~ 110 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPDFILATDIAEMGANL-CVERVLDCRTAF 110 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEECCEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcCEEEEechhhhceec-CceEEEecCcee
Confidence 68999999999999999999986 78999999999988765 5678899999999999999999 5999997664
Q ss_pred -----------------CCChhhHHHHhcccCCCCCCceEEEecC
Q 011052 165 -----------------PNDPETFVHRSGRTGRAGKEGTAILMFT 192 (494)
Q Consensus 165 -----------------P~~~~~y~qr~GR~gR~G~~g~~i~l~~ 192 (494)
|.+..+..||.||+||.+....++.+|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 111 KPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp EEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 2467788999999999865555555554
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=99.24 E-value=1.6e-11 Score=108.77 Aligned_cols=124 Identities=23% Similarity=0.277 Sum_probs=98.6
Q ss_pred CcccHHHHH-HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 70 TATSKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 70 ~~~~k~~~L-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
...+|...+ ..+...+..+.++||+|.|.+.++.++..|.+ ++++.+++......+-+-+-+.-. .-.|.|||++|
T Consensus 15 T~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~II~~Ag~--~g~VtIATNmA 92 (175)
T d1tf5a4 15 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQ--KGAVTIATNMA 92 (175)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTS--TTCEEEEETTS
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHHHHHHHhccC--CCceeehhhHH
Confidence 445666554 44456667789999999999999999999996 788999998854444333333333 44699999999
Q ss_pred hccCCCC---ccc-----EEEecCCCCChhhHHHHhcccCCCCCCceEEEecChhh
Q 011052 148 ARGLDIP---NVD-----LIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 148 ~~GiDip---~v~-----~VI~~~~P~~~~~y~qr~GR~gR~G~~g~~i~l~~~~e 195 (494)
.||.||. .|. |||....|.+..-..|-.||+||.|.+|.+.+|++-.|
T Consensus 93 GRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD 148 (175)
T d1tf5a4 93 GRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 148 (175)
T ss_dssp STTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCH
Confidence 9999983 333 89999999999999999999999999999999886554
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.58 E-value=1.2e-07 Score=84.99 Aligned_cols=124 Identities=27% Similarity=0.346 Sum_probs=95.6
Q ss_pred CcccHHHH-HHHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh
Q 011052 70 TATSKRTI-LSDLITVYAKGGKTIVFTQTKRDADEVSLALTS-IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA 147 (494)
Q Consensus 70 ~~~~k~~~-L~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~ 147 (494)
....|... +.++...+..+.++||.+.|.+..+.++..|.+ ++++.+|++.- .+|+..+=.=.-..-.|-|||++|
T Consensus 15 T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~--herEAeIIAqAG~~GaVTIATNMA 92 (219)
T d1nkta4 15 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKY--HEQEATIIAVAGRRGGVTVATNMA 92 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSC--HHHHHHHHHTTTSTTCEEEEETTC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhh--HHHHHHHHHhcccCCcEEeecccc
Confidence 34456554 455666677889999999999999999999986 89999999974 344433322222234599999999
Q ss_pred hccCCCC---c--------------------------------------------c-----cEEEecCCCCChhhHHHHh
Q 011052 148 ARGLDIP---N--------------------------------------------V-----DLIIHYELPNDPETFVHRS 175 (494)
Q Consensus 148 ~~GiDip---~--------------------------------------------v-----~~VI~~~~P~~~~~y~qr~ 175 (494)
.||.||- + | -|||-..-..+..---|-.
T Consensus 93 GRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQLR 172 (219)
T d1nkta4 93 GRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLR 172 (219)
T ss_dssp STTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHH
T ss_pred CCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecccccccccccccc
Confidence 9999992 1 1 1788888888888889999
Q ss_pred cccCCCCCCceEEEecChhh
Q 011052 176 GRTGRAGKEGTAILMFTSSQ 195 (494)
Q Consensus 176 GR~gR~G~~g~~i~l~~~~e 195 (494)
||+||.|.+|.+.+|++-.|
T Consensus 173 GRsGRQGDPGsSrFflSLeD 192 (219)
T d1nkta4 173 GRSGRQGDPGESRFYLSLGD 192 (219)
T ss_dssp HTSSGGGCCEEEEEEEETTS
T ss_pred ccccccCCCccceeEEeccH
Confidence 99999999999999987665
|
| >d2e29a1 d.58.7.5 (A:8-92) ATP-dependent RNA helicase DDX50 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: RNA-binding domain, RBD family: GUCT domain domain: ATP-dependent RNA helicase DDX50 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=3.9e-07 Score=69.73 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=69.5
Q ss_pred CCcccccCCCCceEEEEecCCccccCccchhHHHHHhhhhcCcC-ccccccEEEeecCCcceeEEecCHHHHHHHHhhcC
Q 011052 275 SSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTA-ADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQI 353 (494)
Q Consensus 275 ~~rsl~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~ig~i~~~~~~~~~gs~~d~~~~~~~~~~~~~~ 353 (494)
+.|||++..+|++|+.+....+ ..+|..++..|.+..+.. .+.|..+.+..+. +|++||||.+.++++.+.+.
T Consensus 2 k~RSLLts~~g~~T~~l~~~~~----i~~~~y~w~~Lr~~L~e~~~~~I~~M~l~kd~--~GavFDVpse~~~~i~~~W~ 75 (85)
T d2e29a1 2 EPRSLITSDKGFVTMTLESLEE----IQDVSCAWKELNRKLSSNAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEWH 75 (85)
T ss_dssp CCCCCCCCCCCEEEEEEECSSC----CSSTHHHHHHHHHHSCHHHHTTCEEEEECTTS--SEEEEEEEHHHHHHHHHHCC
T ss_pred ccccccccCCCcEEEEEecCcc----ccccHHHHHHHHHHccHHHHHhhheeEEecCC--CEEEEeccHHHHHHHHHHhc
Confidence 4699999999999999988763 356899999999887754 4458888888876 69999999999999999999
Q ss_pred CCCCceEee
Q 011052 354 PPGNTISKI 362 (494)
Q Consensus 354 ~~~~~l~v~ 362 (494)
+..+.++++
T Consensus 76 dsr~~ls~~ 84 (85)
T d2e29a1 76 DSDWILSVP 84 (85)
T ss_dssp SSSCEEECC
T ss_pred ccceEEecC
Confidence 987877765
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.15 E-value=0.00089 Score=62.35 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=73.9
Q ss_pred cHHHHH-HHHHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh
Q 011052 73 SKRTIL-SDLITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV 146 (494)
Q Consensus 73 ~k~~~L-~~ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~ 146 (494)
-|..+. ..++..+..+.++++.+||.-.|.+.++.+.+ ++.+..+||+++..+|.+++++.++|+++|+|.|-.
T Consensus 116 GKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThs 195 (264)
T d1gm5a3 116 GKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA 195 (264)
T ss_dssp SHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT
T ss_pred cccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehH
Confidence 454433 33344455678999999999999999988875 357899999999999999999999999999999965
Q ss_pred -hhccCCCCcccEEEecCCCCChhhHHHHhc
Q 011052 147 -AARGLDIPNVDLIIHYELPNDPETFVHRSG 176 (494)
Q Consensus 147 -~~~GiDip~v~~VI~~~~P~~~~~y~qr~G 176 (494)
+...+.+.++.+||.-. ...-.|.||..
T Consensus 196 l~~~~~~f~~LglviiDE--qH~fgv~Qr~~ 224 (264)
T d1gm5a3 196 LIQEDVHFKNLGLVIIDE--QHRFGVKQREA 224 (264)
T ss_dssp HHHHCCCCSCCCEEEEES--CCCC-----CC
T ss_pred HhcCCCCccccceeeecc--ccccchhhHHH
Confidence 44567777888777432 12224666643
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0018 Score=59.13 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=73.2
Q ss_pred ccHHHHHHH-HHHHhccCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech
Q 011052 72 TSKRTILSD-LITVYAKGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD 145 (494)
Q Consensus 72 ~~k~~~L~~-ll~~~~~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~ 145 (494)
.-|.++... +...+..+.++++.+||.-.+.+.++.+++ .+.+..+|+.++..+|..+++.+.+|+.+|||.|-
T Consensus 87 sGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGth 166 (233)
T d2eyqa3 87 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 166 (233)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeeh
Confidence 356554443 344556788999999999999999999985 25678899999999999999999999999999997
Q ss_pred hh-hccCCCCcccEEEe
Q 011052 146 VA-ARGLDIPNVDLIIH 161 (494)
Q Consensus 146 ~~-~~GiDip~v~~VI~ 161 (494)
.+ ..-+.++++-+||.
T Consensus 167 s~l~~~~~f~~LgLiIi 183 (233)
T d2eyqa3 167 KLLQSDVKFKDLGLLIV 183 (233)
T ss_dssp HHHHSCCCCSSEEEEEE
T ss_pred hhhccCCccccccceee
Confidence 54 44688888887774
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.02 Score=51.35 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=54.7
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v 156 (494)
..++||+|||++.|.++++.+.+ .+.+..++|+.+..+....++. ..+|||+|+ .....+++.++
T Consensus 85 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~----~~~Ilv~TPgrl~~~~~~~~~~~~~l 160 (222)
T d2j0sa1 85 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSLRTRAI 160 (222)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhcc----CCeEEeCCCCcHHhcccccccccccc
Confidence 35799999999999999988763 3678889999998887777765 678999997 33455677777
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
.++|
T Consensus 161 ~~lV 164 (222)
T d2j0sa1 161 KMLV 164 (222)
T ss_dssp CEEE
T ss_pred eeee
Confidence 7766
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.09 Score=46.19 Aligned_cols=70 Identities=19% Similarity=0.174 Sum_probs=54.9
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCC
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIP 154 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip 154 (494)
...++||.|+|++.|.++++.+.. ...+..++|+....++...++. ..+|+|+|+ .-...+++.
T Consensus 70 ~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~ivv~TPgrl~~~~~~~~~~~~ 145 (206)
T d1veca_ 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDD----TVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTS----CCSEEEECHHHHHHHHHTTCSCCT
T ss_pred cCcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHh----ccCeEEeCCccccccccchhcccc
Confidence 345899999999999999988763 2456778889888888877765 789999998 334456778
Q ss_pred cccEEE
Q 011052 155 NVDLII 160 (494)
Q Consensus 155 ~v~~VI 160 (494)
++.++|
T Consensus 146 ~l~~lV 151 (206)
T d1veca_ 146 HVQMIV 151 (206)
T ss_dssp TCCEEE
T ss_pred ccceEE
Confidence 888777
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.01 E-value=0.074 Score=46.78 Aligned_cols=70 Identities=21% Similarity=0.248 Sum_probs=53.7
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh-----h-hccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-----A-ARGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-----~-~~GiDip~ 155 (494)
.+.++||.|+|++.|.++++.+.. ...+..++|+.+..++.+.++ ..+|||+|+- + ...+++.+
T Consensus 71 ~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-----~~~IlV~TP~~l~~~l~~~~~~~~~ 145 (208)
T d1hv8a1 71 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 145 (208)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred cCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-----CCCEEEEChHHHHHHHHcCCCCccc
Confidence 345899999999999999888763 357888999988887766653 4689999972 2 44567788
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+.++|-
T Consensus 146 l~~lVi 151 (208)
T d1hv8a1 146 VKYFIL 151 (208)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 887763
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=92.71 E-value=0.13 Score=46.31 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=50.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCccc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNVD 157 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v~ 157 (494)
.++||.|+|++.|.++++.+.. .+.+..++|+....++.+.... ..+|||+|+ +-...+++.++.
T Consensus 99 ~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivV~TP~~l~~~~~~~~~~l~~v~ 174 (238)
T d1wrba1 99 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM----GCHLLVATPGRLVDFIEKNKISLEFCK 174 (238)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSS----CCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhccc----CCceeecCHHHHHhHHccCceeccccc
Confidence 4799999999999999988753 4678888888777766555443 788999998 223455666666
Q ss_pred EEE
Q 011052 158 LII 160 (494)
Q Consensus 158 ~VI 160 (494)
++|
T Consensus 175 ~lV 177 (238)
T d1wrba1 175 YIV 177 (238)
T ss_dssp EEE
T ss_pred eee
Confidence 655
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.24 E-value=0.23 Score=44.09 Aligned_cols=77 Identities=17% Similarity=0.316 Sum_probs=52.0
Q ss_pred HHHhccCCcEEEEcCChhhHHHHHHHHhcc-----C----ceeeecCCCCHHHHHHHHccccCCCeeEEEechh-hhcc-
Q 011052 82 ITVYAKGGKTIVFTQTKRDADEVSLALTSI-----I----ASEALHGDISQHQRERTLNGFRQGKFTVLVATDV-AARG- 150 (494)
Q Consensus 82 l~~~~~~~~~IVF~~t~~~~~~l~~~L~~~-----~----~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~-~~~G- 150 (494)
+....++.++||.+||+..++++++.+++. + .+..++++.+..++...++... ..+|||+|+- +.+.
T Consensus 80 ~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~Ilv~Tp~~l~~~~ 157 (237)
T d1gkub1 80 LFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR--NFKIVITTTQFLSKHY 157 (237)
T ss_dssp HHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG--GCSEEEEEHHHHHHCS
T ss_pred HHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhcccc--ccceeccChHHHHHhh
Confidence 333456789999999999999999888641 2 2445677888888887777654 4569999963 2222
Q ss_pred CCCCcccEEE
Q 011052 151 LDIPNVDLII 160 (494)
Q Consensus 151 iDip~v~~VI 160 (494)
.++.++++||
T Consensus 158 ~~~~~~~~vV 167 (237)
T d1gkub1 158 RELGHFDFIF 167 (237)
T ss_dssp TTSCCCSEEE
T ss_pred hhcCCCCEEE
Confidence 2334455444
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.90 E-value=0.23 Score=43.37 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=49.9
Q ss_pred CcEEEEcCChhhHHHHHHHHhc------cCceeeecCCCCHHHHHHHHccccCCCeeEEEechh------hhccCCCCcc
Q 011052 89 GKTIVFTQTKRDADEVSLALTS------IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDV------AARGLDIPNV 156 (494)
Q Consensus 89 ~~~IVF~~t~~~~~~l~~~L~~------~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~------~~~GiDip~v 156 (494)
.++||.|+|++.|.++++.+.. .+.+..++|+.+.......+.+ ...+|||+|+- -...+++.++
T Consensus 70 ~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~ilI~TP~rl~~~~~~~~~~l~~l 146 (207)
T d1t6na_ 70 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLNLKHI 146 (207)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred ceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHh---cCCCEEEeCcchhhhhccCCceecccc
Confidence 4799999999999999988863 2456778888887766555432 36789999982 2234566666
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
.++|
T Consensus 147 ~~lV 150 (207)
T d1t6na_ 147 KHFI 150 (207)
T ss_dssp CEEE
T ss_pred ceee
Confidence 6655
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=0.21 Score=43.91 Aligned_cols=69 Identities=16% Similarity=0.220 Sum_probs=45.2
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v 156 (494)
...+||+|+|++.+.++...+.. .+.+..++++.+..++...++ ..+|+|+|+ .-...+++.++
T Consensus 78 ~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~IvI~TP~~l~~~~~~~~~~l~~l 152 (212)
T d1qdea_ 78 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKI 152 (212)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-----TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhc-----CCcEEEECCCccccccccCceecCcc
Confidence 45899999999999999988863 245666777665555544332 468999998 34556788889
Q ss_pred cEEEe
Q 011052 157 DLIIH 161 (494)
Q Consensus 157 ~~VI~ 161 (494)
+++|-
T Consensus 153 ~~lVl 157 (212)
T d1qdea_ 153 KMFIL 157 (212)
T ss_dssp CEEEE
T ss_pred eEEee
Confidence 98773
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.95 E-value=0.22 Score=44.02 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=45.8
Q ss_pred CCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCcc
Q 011052 88 GGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPNV 156 (494)
Q Consensus 88 ~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~v 156 (494)
..++||+|||++.|.++++.+.. .+.+..++++....+ ..........+|||+|+ +-...+++.++
T Consensus 80 ~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l 156 (218)
T d2g9na1 80 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 156 (218)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCS---TTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhH---HHHHHhcCCCEEEEeCChhHHHHHhcCCcccccc
Confidence 45799999999999999998874 234445555432221 12233445788999998 23344667778
Q ss_pred cEEE
Q 011052 157 DLII 160 (494)
Q Consensus 157 ~~VI 160 (494)
.+||
T Consensus 157 ~~lV 160 (218)
T d2g9na1 157 KMFV 160 (218)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 8877
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.35 E-value=1.1 Score=38.48 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=56.6
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEech------hhhccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATD------VAARGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~------~~~~GiDip~ 155 (494)
....+++.+++.+.+.+....+.. .+.+..++|+.....+...+.. ..+|||+|+ +-...+++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~Ili~TP~~l~~~l~~~~~~l~~ 143 (206)
T d1s2ma1 68 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE----TVHILVGTPGRVLDLASRKVADLSD 143 (206)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTS----CCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred ccccceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcc----cceEEEECCcccccccccceeeccc
Confidence 346889999999999888777652 4789999999999888877755 789999998 3345678888
Q ss_pred ccEEEe
Q 011052 156 VDLIIH 161 (494)
Q Consensus 156 v~~VI~ 161 (494)
+.++|-
T Consensus 144 l~~lV~ 149 (206)
T d1s2ma1 144 CSLFIM 149 (206)
T ss_dssp CCEEEE
T ss_pred ceEEEe
Confidence 888773
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.25 E-value=6.5 Score=32.63 Aligned_cols=69 Identities=26% Similarity=0.324 Sum_probs=52.0
Q ss_pred cCCcEEEEcCChhhHHHHHHHHhc-----cCceeeecCCCCHHHHHHHHccccCCCeeEEEechhh------hccCCCCc
Q 011052 87 KGGKTIVFTQTKRDADEVSLALTS-----IIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVA------ARGLDIPN 155 (494)
Q Consensus 87 ~~~~~IVF~~t~~~~~~l~~~L~~-----~~~~~~lhg~~~~~~R~~~l~~Fr~g~~~iLVaT~~~------~~GiDip~ 155 (494)
.+.++|+.+|++..+++.++.+.+ ...+..+|++....++...... ..++++|+.. ..-+...+
T Consensus 51 ~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~i~t~~~~~~~~~~~~~~~~~ 125 (200)
T d1wp9a1 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-----AKVIVATPQTIENDLLAGRISLED 125 (200)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-----CSEEEECHHHHHHHHHTTSCCTTS
T ss_pred cCCcEEEEcCchHHHHHHHHHHHHhhcccccceeeeecccchhHHHHhhhc-----ccccccccchhHHHHhhhhhhccc
Confidence 467899999999999999888874 3567888999999998887754 4688998632 22244456
Q ss_pred ccEEE
Q 011052 156 VDLII 160 (494)
Q Consensus 156 v~~VI 160 (494)
+++||
T Consensus 126 ~~~vI 130 (200)
T d1wp9a1 126 VSLIV 130 (200)
T ss_dssp CSEEE
T ss_pred cceEE
Confidence 77776
|