Citrus Sinensis ID: 011053

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----

MAVAGVYRRVLPSPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLASLAVVLNALAIDPGRTWKGPWRWFDDTMLDCCEPLSKIKDEGITFGKVSCLAFCNGANVEAFRTNESSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSRIPKAPSILYTVSCRHEGWNKVAKYLTEDVPLRLKSDDVKSVENLLSVIFKSAPADLKEFIKWVAEVRRQEDGSMILSEEEKGRLVMKEEVLKQTRETELFKYVAKWSASKISLCKGVTSWGLKETLPELAADICCQGAELFMGKLSSSEGTCCRQTNVTLLKVDDEKAMTVVSGTVTTDGIEKEIETLVPSSITELSNLCDFDQSNCKGMHPSTADVLTVLLLALPQHTWSGIKEEELRMQFNHLASVDKLPSLLQQEVQHLRRQLHFLMTDLSAP

cccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHcccccccccEEEEEEEEcccccccEEEEEccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccHHHHcHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEcccccccccccccccEEEEEEEEccccccEEEEEEEcccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccc

cccHHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccEEEcHHHccccccHHHHHHccccHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEccHHccccccccccccccccccccEEEEEEcccccccccEEcHHHHHHHHcccccccccccEEEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEEEcccccEEEEEEEEEcccccccEEEEEEcccccccccccccccccEEccccccHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccc

mavagvyrrvlpsppaiefaspqGKKLFIEALEGGTMEGFFKLISYYQtqsepaycGLASLAVVLNALaidpgrtwkgpwrwfddtmldcceplskikdegitfgkVSCLAfcnganveafrtnessiDEFRRHVissassedshvitsyhrgvfkqtgtghfspiggyhagKDMVLILDVArfkypphwvpLTLLWEAMDTidnatghrrgfmtvsripkapsiLYTVSCRHEGWNKVAKYLTedvplrlksddvKSVENLLSVIFKSAPADLKEFIKWVAEVRRQedgsmilseeeKGRLVMKEEVLKQTRETELFKYVAKWSASKISLckgvtswglketlpELAADICCQGAELFmgklsssegtccrqtnvtllkvddekaMTVVSGTVTTDGIEKEIETLVPSSITelsnlcdfdqsnckgmhpstADVLTVLLLALpqhtwsgiKEEELRMQFNHLASVDKLPSLLQQEVQHLRRQLHFLMTDLSAP

mavagvyrrvlpsppaiefaspqGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLASLAVVLNALAIDPGRTWKGPWRWFDDTMLDCCEPLSKIKDEGITFGKVSCLAFCNGANVEAFRTNESSIDEFRRHVISsassedshvITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSRIPKAPSILYTVSCRHEGWNKVAKYLTedvplrlksddvksVENLLSVifksapadlKEFIKWVAEVRrqedgsmilseeekgrlvmkeevlkqtreTELFKYVAKWSASKISLCKGVTSWGLKETLPELAADICCQGAELFMGklsssegtcCRQTNVtllkvddekamtvvsgtvttdgiekEIETLVPSSITELSNLCDFDQSNCKGMHPSTADVLTVLLLALPQHTWSGIKEEELRMQFNHLASVDKLPSLLQQEVQHLRRQLHFLMTDLSAP

MAVAGVYRRVLPSPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGlaslavvlnalaIDPGRTWKGPWRWFDDTMLDCCEPLSKIKDEGITFGKVSCLAFCNGANVEAFRTNESSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSRIPKAPSILYTVSCRHEGWNKVAKYLTEDVPLRLKSDDVKSVENLLSVIFKSAPADLKEFIKWVAEVRRQEDGSMILSEEEKGRLVMKEEVLKQTRETELFKYVAKWSASKISLCKGVTSWGLKETLPELAADICCQGAELFMGKLSSSEGTCCRQTNVTLLKVDDEKAMTVVSGTVTTDGIEKEIETLVPSSITELSNLCDFDQSNCKGMHPStadvltvlllalPQHTWSGIKEEELRMQFNHLASVDKLPSLLQQEVQHLRRQLHFLMTDLSAP

******Y**V******IEFA**QGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLASLAVVLNALAIDPGRTWKGPWRWFDDTMLDCCEPLSKIKDEGITFGKVSCLAFCNGANVEAFRTNESSIDEFRRHV*********HVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSRIPKAPSILYTVSCRHEGWNKVAKYLTEDVPLRLKSDDVKSVENLLSVIFKSAPADLKEFIKWVAEVRR****************V***EVLKQTRETELFKYVAKWSASKISLCKGVTSWGLKETLPELAADICCQGAELFMGKLSSSEGTCCRQTNVTLLKVDDEKAMTVVSGTVTTDGIEKEIETLVPSSITELSNLCDFDQSNCKGMHPSTADVLTVLLLALPQHTWSGIKEEELRMQFNHLASVDKLPSLLQQEVQHLRRQLHFLM******

****GVYRRVLPSPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLASLAVVLNALAIDPGRTWKGPWRWFDDTMLDCCEPLSKIKDEGITFGKVSCLAFCNGANVEAFRTNESSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSRIPKAPSILYTVSCRHEGWNKVAKYLTEDVPLRLKSDDVKSVENLLSVIFKSAPADLKEFIKWVAEVR****************LVMKEEVLKQTRETELFKYVAKWSASKIS**********KETLPELAADICCQGAELFMGKLSSSEGTCCRQTNVTLLKVDDEKAMTVVSGTVTTDGIEKEIETLVPSSI***************GMHPSTADVLTVLLLALPQHTWSGIKEEELRMQFNHLASVDKLPSLLQQEVQHLRRQLHFLMTDLS**

*****VYRRVLPSPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLASLAVVLNALAIDPGRTWKGPWRWFDDTMLDCCEPLSKIKDEGITFGKVSCLAFCNGANVEAFRTNESSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSRIPKAPSILYTVSCRHEGWNKVAKYLTEDVPLRLKSDDVKSVENLLSVIFKSAPADLKEFIKWVAEVRRQEDGSMILSEEEKGRLVMKEEVLKQTRETELFKYVAKWSASKISLCKGVTSWGLKETLPELAADICCQGAELFMGKLSSSEGTCCRQTNVTLLKVDDEKAMTVVSGTVTTDGIEKEIETLVPSSITELSNLCDFDQSNCKGMHPSTADVLTVLLLALPQHTWSGIKEEELRMQFNHLASVDKLPSLLQQEVQHLRRQLHFLMTDLS**

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		494	2.2.26 [Sep-21-2011]
Q2QKL5		479	Glutathione gamma-glutamy	N/A	no	0.949	0.979	0.647	1e-180
Q2TSC7		501	Glutathione gamma-glutamy	N/A	no	0.977	0.964	0.590	1e-176
Q2TE74		482	Glutathione gamma-glutamy	N/A	no	0.947	0.970	0.643	1e-176
Q9SWW5		500	Glutathione gamma-glutamy	N/A	no	0.981	0.97	0.589	1e-163
Q9S7Z3		485	Glutathione gamma-glutamy	yes	no	0.927	0.944	0.578	1e-160
Q9ZWB7		452	Glutathione gamma-glutamy	no	no	0.882	0.964	0.535	1e-150
Q10075		414	Glutathione gamma-glutamy	yes	no	0.528	0.630	0.426	9e-60

>sp\|Q2QKL5\|PCS3_LOTJA Glutathione gamma-glutamylcysteinyltransferase 3 OS=Lotus japonicus GN=PCS3 PE=2 SV=1	Back alignment and function desciption

 Score =  632 bits (1629), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 311/480 (64%), Positives = 380/480 (79%), Gaps = 11/480 (2%)

Query: 1   MAVAGVYRRVLPSPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLAS 60
           MA AG+YRRVLPSPPAI+FASP+GKK+F+EAL  GTMEGFFKL+SYYQTQSEPAYCGLA+
Sbjct: 1   MASAGLYRRVLPSPPAIDFASPEGKKIFVEALGQGTMEGFFKLVSYYQTQSEPAYCGLAT 60

Query: 61  LAVVLNALAIDPGRTWKGPWRWFDDTMLDCCEPLSKIKDEGITFGKVSCLAFCNGANVEA 120
           L VVLNAL+IDPGR WKGPWRWFDD+MLDCCEPL KIK +GITFGKV+CLA CNGA+VEA
Sbjct: 61  LTVVLNALSIDPGRKWKGPWRWFDDSMLDCCEPLEKIKVQGITFGKVACLARCNGAHVEA 120

Query: 121 FRTNESSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILD 180
           FR+NES++ +FR  VIS  SSED H+I SYHR   KQTG GHFSPIGGYHA +DMVLILD
Sbjct: 121 FRSNESTVSDFRDRVISCCSSEDRHLIVSYHRSGLKQTGEGHFSPIGGYHAERDMVLILD 180

Query: 181 VARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSRIPKAPSILYTVSCRHEGWNKVA 240
           V R+KYPPHWVPLTLLW+AM+TID ATG +RG+M +S++ +APSILYTVSCRHEGW+ VA
Sbjct: 181 VTRYKYPPHWVPLTLLWDAMNTIDRATGLQRGYMIISKLKRAPSILYTVSCRHEGWSSVA 240

Query: 241 KYLTEDVPLRLKSDDVKSVENLLSVIFKSAPADLKEFIKWVAEVRRQEDGSMILSEEEKG 300
           K+LTE+VPL LKS+D+K ++ +LSV+FKS P++L+EFI W+AEVRRQEDG++ LSEEEKG
Sbjct: 241 KFLTENVPLLLKSEDLKDIQEVLSVVFKSPPSELREFITWIAEVRRQEDGNLTLSEEEKG 300

Query: 301 RLVMKEEVLKQTRETELFKYVAKWSASKISLCKGVTSWGLKETLPELAADICCQGAELFM 360
           RL +K ++L+Q R T LFK+V  W  S+ S C+ +     ++ LPELAA +CCQGA L  
Sbjct: 301 RLAIKADILEQIRTTTLFKHVTSWLDSQRSRCRTIAKLQDRDMLPELAAGVCCQGACLLT 360

Query: 361 GKLSSSEGTCCRQTNVTLLKVDDEKAMTVVSGTVTT-DGIEKEIETLVPSSITELSNLCD 419
           G      G CC Q +V  L VD +  +T+VSGTV +    E+ ++ LVP        LC 
Sbjct: 361 G-CCLPGGKCCSQIDVKHLNVDHKNIVTLVSGTVASGSSSEQGVDVLVP--------LCQ 411

Query: 420 FD-QSNCKGMHPSTADVLTVLLLALPQHTWSGIKEEELRMQFNHLASVDKLPSLLQQEVQ 478
              + +C GMHPSTADVLTVLLLALP HTWSGIKEE+L  +   L + + LP LLQ+EV+
Sbjct: 412 MGPEGHCIGMHPSTADVLTVLLLALPLHTWSGIKEEKLCAEVTSLLTTENLPPLLQEEVR 471

Involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants.
Lotus japonicus (taxid: 34305)
EC: 2EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 5

>sp\|Q2TSC7\|PCS1_LOTJA Glutathione gamma-glutamylcysteinyltransferase 1 OS=Lotus japonicus GN=PCS1 PE=2 SV=1	Back alignment and function description

>sp\|Q2TE74\|PCS2_LOTJA Glutathione gamma-glutamylcysteinyltransferase 2 OS=Lotus japonicus GN=PCS2 PE=2 SV=2	Back alignment and function description

>sp\|Q9SWW5\|PCS1_WHEAT Glutathione gamma-glutamylcysteinyltransferase 1 OS=Triticum aestivum GN=PCS1 PE=2 SV=1	Back alignment and function description

>sp\|Q9S7Z3\|PCS1_ARATH Glutathione gamma-glutamylcysteinyltransferase 1 OS=Arabidopsis thaliana GN=PCS1 PE=1 SV=1	Back alignment and function description

>sp\|Q9ZWB7\|PCS2_ARATH Glutathione gamma-glutamylcysteinyltransferase 2 OS=Arabidopsis thaliana GN=PCS2 PE=2 SV=1	Back alignment and function description

>sp\|Q10075\|PCS_SCHPO Glutathione gamma-glutamylcysteinyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H1.10 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		494
224129604		496	predicted protein [Populus trichocarpa]	0.991	0.987	0.700	0.0
449445620		487	PREDICTED: glutathione gamma-glutamylcys	0.985	1.0	0.661	0.0
356505041		499	PREDICTED: glutathione gamma-glutamylcys	0.997	0.987	0.661	0.0
255577926		502	conserved hypothetical protein [Ricinus	0.995	0.980	0.627	0.0
388497750		489	unknown [Lotus japonicus]	0.981	0.991	0.645	0.0
122202937		479	RecName: Full=Glutathione gamma-glutamyl	0.949	0.979	0.647	1e-178
225438071		481	PREDICTED: glutathione gamma-glutamylcys	0.933	0.958	0.630	1e-176
255964729		491	phytochelatin synthase [Sonchus arvensis	0.973	0.979	0.603	1e-175
254935134		501	phytochelatin synthase isoform 3 [Sesban	0.979	0.966	0.589	1e-174
122208907		501	RecName: Full=Glutathione gamma-glutamyl	0.977	0.964	0.590	1e-174

>gi\|224129604\|ref\|XP_002320627.1\| predicted protein [Populus trichocarpa] gi\|222861400\|gb\|EEE98942.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/491 (70%), Positives = 401/491 (81%), Gaps = 1/491 (0%)

Query: 1   MAVAGVYRRVLPSPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLAS 60
           MAVAG YRR LPSPPAIEFASP+GK+LF EALEGGTM  FFKLISYYQTQSEPAYCGLAS
Sbjct: 1   MAVAGFYRRALPSPPAIEFASPEGKQLFTEALEGGTMNSFFKLISYYQTQSEPAYCGLAS 60

Query: 61  LAVVLNALAIDPGRTWKGPWRWFDDTMLDCCEPLSKIKDEGITFGKVSCLAFCNGANVEA 120
           LA+VLNALAIDPGRTWKGPWRWFDD+MLDCCEPL KIK++GITFGKV+CLA CN A VE 
Sbjct: 61  LAMVLNALAIDPGRTWKGPWRWFDDSMLDCCEPLVKIKEKGITFGKVACLAHCNAAKVET 120

Query: 121 FRTNESSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILD 180
           FRTNE ++D FRR V+S  SSED ++I+SYHRG FKQTG+GHFSPIGGYHAGKDMVLILD
Sbjct: 121 FRTNEITVDGFRRFVVSCNSSEDYYIISSYHRGAFKQTGSGHFSPIGGYHAGKDMVLILD 180

Query: 181 VARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSRIPKAPSILYTVSCRHEGWNKVA 240
           VARFKYPPHWVPL LLWEAM+TID ATGH RGFM +S++ KA SILYT+SCRH+GW+ VA
Sbjct: 181 VARFKYPPHWVPLELLWEAMNTIDKATGHHRGFMILSKLDKASSILYTLSCRHKGWSSVA 240

Query: 241 KYLTEDVPLRLKSDDVKSVENLLSVIFKSAPADLKEFIKWVAEVRRQEDGSMILSEEEKG 300
            YL+ DVP  LKS+DVK VE +LSV+FKS PADL+EFIKWVAEVRRQ+DG +ILSEEEKG
Sbjct: 241 NYLSADVPHLLKSEDVKDVEEVLSVVFKSPPADLREFIKWVAEVRRQDDGGIILSEEEKG 300

Query: 301 RLVMKEEVLKQTRETELFKYVAKWSASKISLCKGVTSWGLKETLPELAADICCQGAELFM 360
           RL +KEEVLKQ + TELFKYV +W  S+IS CKG  S G    LPE+AA++CCQGA+L  
Sbjct: 301 RLSIKEEVLKQVQGTELFKYVTRWLISEISTCKGAIS-GHNNELPEIAANVCCQGAKLLT 359

Query: 361 GKLSSSEGTCCRQTNVTLLKVDDEKAMTVVSGTVTTDGIEKEIETLVPSSITELSNLCDF 420
              SS +    ++  V   K D EK +TVVSGTV TDG E+ ++ LVP S T  S+LCD 
Sbjct: 360 ENFSSLDCMVFKKAGVKFWKSDGEKPVTVVSGTVFTDGSEQGVDMLVPLSQTAASSLCDL 419

Query: 421 DQSNCKGMHPSTADVLTVLLLALPQHTWSGIKEEELRMQFNHLASVDKLPSLLQQEVQHL 480
           DQ+ C G HPS  DVL+VL+ +L Q+TWS IK+E+L+ + N L S+D +P LLQ+EV HL
Sbjct: 420 DQNGCHGFHPSAGDVLSVLIFSLHQNTWSNIKDEKLQAEINSLVSIDNVPPLLQEEVLHL 479

Query: 481 RRQLHFLMTDL 491
           RRQLHFL  D+
Sbjct: 480 RRQLHFLTIDI 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449445620\|ref\|XP_004140570.1\| PREDICTED: glutathione gamma-glutamylcysteinyltransferase 3-like [Cucumis sativus] gi\|449487363\|ref\|XP_004157589.1\| PREDICTED: glutathione gamma-glutamylcysteinyltransferase 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356505041\|ref\|XP_003521301.1\| PREDICTED: glutathione gamma-glutamylcysteinyltransferase 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|255577926\|ref\|XP_002529835.1\| conserved hypothetical protein [Ricinus communis] gi\|223530663\|gb\|EEF32536.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|388497750\|gb\|AFK36941.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|122202937\|sp\|Q2QKL5.1\|PCS3_LOTJA RecName: Full=Glutathione gamma-glutamylcysteinyltransferase 3; AltName: Full=LjPCS3-7N; AltName: Full=Phytochelatin synthase 3 gi\|67773366\|gb\|AAY81940.1\| phytochelatin synthase [Lotus japonicus] gi\|67773368\|gb\|AAY81941.1\| phytochelatin synthase PCS3-7N [Lotus japonicus]	Back alignment and taxonomy information

>gi\|225438071\|ref\|XP_002272237.1\| PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255964729\|gb\|ACU44656.1\| phytochelatin synthase [Sonchus arvensis]	Back alignment and taxonomy information

>gi\|254935134\|gb\|ACT87974.1\| phytochelatin synthase isoform 3 [Sesbania rostrata] gi\|254935139\|gb\|ACT87977.1\| phytochelatin synthase isoform 3 [Sesbania rostrata]	Back alignment and taxonomy information

>gi\|122208907\|sp\|Q2TSC7.1\|PCS1_LOTJA RecName: Full=Glutathione gamma-glutamylcysteinyltransferase 1; AltName: Full=LjPCS1-8R; AltName: Full=Phytochelatin synthase 1 gi\|33286859\|gb\|AAQ01752.1\| phytochelatin synthase [Lotus japonicus] gi\|50659121\|gb\|AAT80342.1\| phytochelatin synthase PCS1-8R [Lotus japonicus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		494
TAIR\|locus:2172497		485	CAD1 "CADMIUM SENSITIVE 1" [Ar	0.811	0.826	0.581	5e-131
TAIR\|locus:2024172		452	PCS2 "phytochelatin synthase 2	0.844	0.922	0.527	1.1e-129
DICTYBASE\|DDB_G0291187		626	DDB_G0291187 "glutathione gamm	0.536	0.423	0.443	7.4e-66
POMBASE\|SPAC3H1.10		414	pcs2 "phytochelatin synthetase	0.528	0.630	0.407	1.2e-51
WB\|WBGene00003960		426	pcs-1 [Caenorhabditis elegans	0.443	0.514	0.444	9.8e-48

TAIR\|locus:2172497 CAD1 "CADMIUM SENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
 Identities = 240/413 (58%), Positives = 310/413 (75%)

Query:     1 MAVAGVYRRVLPSPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGXXX 60
             MA+A +YRR LPSPPAI+F+S +GK +F EAL+ GTMEGFF+LISY+QTQSEPAYCG   
Sbjct:     1 MAMASLYRRSLPSPPAIDFSSAEGKLIFNEALQKGTMEGFFRLISYFQTQSEPAYCGLAS 60

Query:    61 XXXXXXXXXIDPGRTWKGPWRWFDDTMLDCCEPLSKIKDEGITFGKVSCLAFCNGANVEA 120
                      IDPGR WKGPWRWFD++MLDCCEPL  +K++GI+FGKV CLA C+GA VEA
Sbjct:    61 LSVVLNALSIDPGRKWKGPWRWFDESMLDCCEPLEVVKEKGISFGKVVCLAHCSGAKVEA 120

Query:   121 FRTNESSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILD 180
             FRT++S+ID+FR+ V+   SSE+ H+I++YHRGVFKQTGTGHFSPIGGY+A +DM LILD
Sbjct:   121 FRTSQSTIDDFRKFVVKCTSSENCHMISTYHRGVFKQTGTGHFSPIGGYNAERDMALILD 180

Query:   181 VARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSRIPKAPSILYTVSCRHEGWNKVA 240
             VARFKYPPHWVPL LLWEAMD+ID +TG RRGFM +SR  + P +LYT+SC+ E W ++A
Sbjct:   181 VARFKYPPHWVPLKLLWEAMDSIDQSTGKRRGFMLISRPHREPGLLYTLSCKDESWIEIA 240

Query:   241 KYLTEDVPLRLKSDDVKSVENLLSVIFKSAPADLKEFIKWVAEVRRQEDGSMILSEEEKG 300
             KYL EDVP  + S  V SVE ++SV+FKS P++  +FI+WVAE+R  ED +  LS EEK 
Sbjct:   241 KYLKEDVPRLVSSQHVDSVEKIISVVFKSLPSNFNQFIRWVAEIRITEDSNQNLSAEEKS 300

Query:   301 RLVMKEEVLKQTRETELFKYVAKWSASKISLCKGVTSWGLKETLPELAADICCQGAELFM 360
             RL +K+ VLK+  ETELFK++ K+          +++ G +++L   AA  CCQGAE+  
Sbjct:   301 RLKLKQLVLKEVHETELFKHINKF----------LSTVGYEDSLTYAAAKACCQGAEILS 350

Query:   361 GKLSSSEGTCCRQTNVTLLKVDDEKAMTVVSGTVTTDGIEKEIETLVPSSITE 413
             G  S S+  CCR+T V  +K  D+   TVV+G V  DG E++++ LVPS+ TE
Sbjct:   351 G--SPSKEFCCRETCVKCIKGPDDSEGTVVTGVVVRDGNEQKVDLLVPSTQTE 401

GO:0009507 "chloroplast" evidence=ISM

GO:0010038 "response to metal ion" evidence=IEA

GO:0016756 "glutathione gamma-glutamylcysteinyltransferase activity" evidence=IEA;IDA;IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0046938 "phytochelatin biosynthetic process" evidence=IEA;ISS;IMP

GO:0046685 "response to arsenic-containing substance" evidence=IMP;IDA

GO:0046686 "response to cadmium ion" evidence=IMP;IDA

GO:0042344 "indole glucosinolate catabolic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0015446 "arsenite-transmembrane transporting ATPase activity" evidence=IDA

GO:0015700 "arsenite transport" evidence=IDA

GO:0071992 "phytochelatin transmembrane transporter activity" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0005507 "copper ion binding" evidence=IDA

GO:0046870 "cadmium ion binding" evidence=IDA

TAIR\|locus:2024172 PCS2 "phytochelatin synthase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291187 DDB_G0291187 "glutathione gamma-glutamylcysteinyltransferase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

POMBASE\|SPAC3H1.10 pcs2 "phytochelatin synthetase" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

WB\|WBGene00003960 pcs-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2QKL5	PCS3_LOTJA	2, ., 3, ., 2, ., 1, 5	0.6479	0.9493	0.9791	N/A	no
Q9SWW5	PCS1_WHEAT	2, ., 3, ., 2, ., 1, 5	0.5893	0.9817	0.97	N/A	no
Q9S7Z3	PCS1_ARATH	2, ., 3, ., 2, ., 1, 5	0.5786	0.9271	0.9443	yes	no
Q2TSC7	PCS1_LOTJA	2, ., 3, ., 2, ., 1, 5	0.5901	0.9777	0.9640	N/A	no
Q2TE74	PCS2_LOTJA	2, ., 3, ., 2, ., 1, 5	0.6437	0.9473	0.9709	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.2	LOW CONFIDENCE prediction!
3rd Layer	2.3.2.15	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIV.198.1	hypothetical protein (486 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		494
pfam09328		264	pfam09328, Phytochelatin_C, Domain of unknown func	1e-124
pfam05023		208	pfam05023, Phytochelatin, Phytochelatin synthase	1e-120

>gnl\|CDD\|220182 pfam09328, Phytochelatin_C, Domain of unknown function (DUF1984)	Back alignment and domain information

 Score =  362 bits (931), Expect = e-124
 Identities = 147/264 (55%), Positives = 194/264 (73%), Gaps = 1/264 (0%)

Query: 221 KAPSILYTVSCRHEGWNKVAKYLTEDVPLRLKSDDVKSVENLLSVIFKSAPADLKEFIKW 280
           +APS+LYT+SC+HE W  +AKYL EDVP  LKS+++K V+ +LSV+FKS PA+  +FIKW
Sbjct: 2   RAPSLLYTLSCKHESWRSMAKYLMEDVPRLLKSENLKDVQEVLSVVFKSLPANFGDFIKW 61

Query: 281 VAEVRRQEDGSMILSEEEKGRLVMKEEVLKQTRETELFKYVAKWSASKISLCKGVTSWGL 340
           VAEVRRQE+G+  LS+EEK RL +KEEVL+Q RETELFK+V KW +S+ S C   +    
Sbjct: 62  VAEVRRQEEGNSSLSKEEKERLALKEEVLQQVRETELFKHVTKWLSSEKSCCCNCSKSSD 121

Query: 341 KETLPELAADICCQGAELFMGKLSSSEGTCCRQTNVTLLKVDDEKAMTVVSGTVTTDGIE 400
           +++LPE+AA +CCQGA +  GKL SS G CC++T V  +K + +   TVVSGTV +DG E
Sbjct: 122 EDSLPEIAASVCCQGAAILTGKLCSSNGFCCKETCVKCVKANGDGPTTVVSGTVVSDGSE 181

Query: 401 KEIETLVPSSITELSNLCDFDQSNCKGMHPSTADVLTVLLLALPQHTWSGIKEEELRMQF 460
           + ++ LVP S T+ ++ C+   S+   MHPS+ DVLTVLLLALP  TWSGIK+E L  + 
Sbjct: 182 QGVDMLVPKSPTK-TSCCNSGSSSEVAMHPSSNDVLTVLLLALPPSTWSGIKDESLLAEI 240

Query: 461 NHLASVDKLPSLLQQEVQHLRRQL 484
             L S + LP LLQ+EV HLRRQL
Sbjct: 241 QRLVSTENLPDLLQEEVLHLRRQL 264

Members of this family of functionally uncharacterized domains are found at the C-terminus of plant phytochelatin synthases. Length = 264

>gnl\|CDD\|218387 pfam05023, Phytochelatin, Phytochelatin synthase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		494
KOG0632		388	consensus Phytochelatin synthase [Inorganic ion tr	100.0
PF09328		264	Phytochelatin_C: Domain of unknown function (DUF19	100.0
PF05023		212	Phytochelatin: Phytochelatin synthase; InterPro: I	100.0
PF13529		144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	98.82
cd02549		141	Peptidase_C39A A sub-family of peptidase family C3	98.43
PF03412		131	Peptidase_C39: Peptidase C39 family This is family	98.26
cd02418		136	Peptidase_C39B A sub-family of peptidase family C3	97.95
cd02259		122	Peptidase_C39_like Peptidase family C39 mostly con	97.78
cd02424		129	Peptidase_C39E A sub-family of peptidase family C3	97.69
PF14399		317	Transpep_BrtH: NlpC/p60-like transpeptidase	97.61
cd02420		125	Peptidase_C39D A sub-family of peptidase family C3	97.55
cd02423		129	Peptidase_C39G A sub-family of peptidase family C3	97.47
cd02425		126	Peptidase_C39F A sub-family of peptidase family C3	97.35
TIGR03796		710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.35
cd02419		127	Peptidase_C39C A sub-family of peptidase family C3	97.1
TIGR01193		708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.07
PF11814		207	DUF3335: Peptidase_C39 like family; InterPro: IPR0	96.88
PF09778		212	Guanylate_cyc_2: Guanylylate cyclase; InterPro: IP	95.55
cd02417		121	Peptidase_C39_likeA A sub-family of peptidase C39	93.99
TIGR03375		694	type_I_sec_LssB type I secretion system ATPase, Ls	93.21
COG2274		709	SunT ABC-type bacteriocin/lantibiotic exporters, c	92.82
cd02421		124	Peptidase_C39_likeD A sub-family of peptidase fami	92.65
TIGR01846		694	type_I_sec_HlyB type I secretion system ABC transp	91.12
COG3271		201	Predicted double-glycine peptidase [General functi	87.04
TIGR03797		686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	85.87

>KOG0632 consensus Phytochelatin synthase [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=1.7e-120  Score=899.09  Aligned_cols=388  Identities=55%  Similarity=0.989  Sum_probs=366.6

Q ss_pred             CCccccccccCCCCCccccCChhhHHHHHHHHhcCCcccccccchhcccCCCCCcccHHHHHHHHHhcccCCCCCcCCCc
Q 011053            1 MAVAGVYRRVLPSPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLASLAVVLNALAIDPGRTWKGPW   80 (494)
Q Consensus         1 m~~~sfyrr~LP~p~~I~f~S~EGk~Lf~eAl~~g~~e~ff~La~~F~TQ~npayCGvASlamVLNAL~idP~r~wkgpw   80 (494)
                      |+|.+||||.||. ++|+|+|.+||++|.|||+.|+||+||.|++||+||++|||||+|||+||||||.|||+|.|||||
T Consensus         1 mt~ksfYrR~Lp~-~ci~FsS~lGK~iF~eALqkGtme~yF~Lasqf~TQ~EPAfCGL~tL~mvLNsL~vDPgr~WKgpW   79 (388)
T KOG0632|consen    1 MTMKSFYRRSLPP-PCIDFSSSLGKDIFNEALQKGTMEGYFSLASQFQTQSEPAFCGLATLSMVLNSLSVDPGRKWKGPW   79 (388)
T ss_pred             CchhhhhccCCCc-hhhhhhhHhhHHHHHHHHHhcchhHHHHHHHHHhccCCcchhhhHHHHHHHHhhccCCcccccCCc
Confidence            8999999999985 899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhccccchhhhhhcCCCHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHhhCCCCceEEEEeecccccccCC
Q 011053           81 RWFDDTMLDCCEPLSKIKDEGITFGKVSCLAFCNGANVEAFRTNESSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGT  160 (494)
Q Consensus        81 rwf~e~mLd~c~~le~V~~~GiTL~Ela~LA~c~G~~V~~~ra~~~sldeFR~~l~~~~ss~~~~vIVNy~R~~LgQtG~  160 (494)
                      |||||+|||||+|++.|++.||+|.+|.|||+|+|++|+++|.+++++|+||..++.|..++|+++|.+|+|++|||||+
T Consensus        80 RwydesMLdCC~pLe~ikk~Gisl~~fsCLA~cnglk~~~~~~s~~t~d~FRk~vv~cstsen~~mi~sy~R~VlgQTGt  159 (388)
T KOG0632|consen   80 RWYDESMLDCCEPLEDIKKKGISLGKFSCLAHCNGLKVEAFRTSQSTIDDFRKDVVKCSTSENCHMISSYHRKVLGQTGT  159 (388)
T ss_pred             hhhhhHHHhhcccHHHHHhcCcchheeehhhhcCCceeEEEecCcchHHHHHHHHHhcccccceeeehHhHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccceeccCCCeeEEEecCCCCCCceeeehHHHHHhhcccCCcCCCceeEEEEecCCCCCCcceeeeecCCChHHHH
Q 011053          161 GHFSPIGGYHAGKDMVLILDVARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSRIPKAPSILYTVSCRHEGWNKVA  240 (494)
Q Consensus       161 GHFSPIGGYh~~tD~VLILDVARfKYpP~WVpl~~L~eAM~tiD~~sgrsRG~ilis~~~~~p~~l~~~~~~~~~w~~~~  240 (494)
                      ||||||||||+++|++||||||||||||||||++.||+||..||.+||++||||+|++++++|+ +||++|++++|..++
T Consensus       160 GHFSPiggy~e~~d~~LIlDVARFKYPphWV~Lkll~eam~siD~stg~pRG~~li~~~h~~~g-l~tl~lkk~sw~~i~  238 (388)
T KOG0632|consen  160 GHFSPIGGYNEERDMALILDVARFKYPPHWVPLKLLWEAMDSIDQSTGQPRGFMLISRPHREPG-LYTLSLKKESWINIA  238 (388)
T ss_pred             CccCcccccCcccCceEEeehhhccCCCcceeHHHHHHHhcchhhccCCCccceecccCCCCCc-eEEEEeccccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHhhccccccCCCCCCHHHHHHHHHhcCchhHHHHHHhhheeeecccCCCCCCHHHHhhhhhHHHHHHHhccCchhHH
Q 011053          241 KYLTEDVPLRLKSDDVKSVENLLSVIFKSAPADLKEFIKWVAEVRRQEDGSMILSEEEKGRLVMKEEVLKQTRETELFKY  320 (494)
Q Consensus       241 ~~~~~~~p~l~~~~~~~~~~~v~~~~~~~~p~~~~~~i~w~~evr~~e~~~~~ls~e~~~~l~~k~~~l~q~~~t~l~~~  320 (494)
                      |||.+|+|.            |.++.|.++|.+++.||  |+|+|+.||.+++++.||     +|+.++           
T Consensus       239 k~lk~~v~~------------i~~~dfas~~~s~NQf~--~~~i~~~~d~~q~~~~E~-----fk~c~r-----------  288 (388)
T KOG0632|consen  239 KYLKEDVPR------------IKNVDFASLPLSFNQFI--IAEIRETEDSNQNLSFEE-----FKQCIR-----------  288 (388)
T ss_pred             HHHHHhhhh------------hhhhHHHhcchhHHHHH--HHHHHhhcCcccccCHHH-----HHHHHH-----------
Confidence            999999987            66677999999999999  999999999999999998     444333           


Q ss_pred             HHHhhhcccccccCCccCCCCCChHHHHHHhhhhhhhhhhccCCCCCCceeccccceeeeecCCCceEEEeeeEEeCCcc
Q 011053          321 VAKWSASKISLCKGVTSWGLKETLPELAADICCQGAELFMGKLSSSEGTCCRQTNVTLLKVDDEKAMTVVSGTVTTDGIE  400 (494)
Q Consensus       321 v~~~~~s~~~~~~~~~~~~~~~~l~~~a~~~ccqga~~l~g~~~~~~~~c~~~t~~~~~~~~~~~~~~~~s~~~~~~~~e  400 (494)
                           ++          .+.++   -+++.+||+|+++++|.  .+..+||++||++|.|.-++.-.|++          
T Consensus       289 -----st----------~~y~~---f~~h~~~c~~~e~~s~~--~~~~~~c~~~~~ac~kg~~e~~~t~~----------  338 (388)
T KOG0632|consen  289 -----ST----------VTYED---FAAHKNCCTGVEILSGA--FSAEFCCPETCVACIKGVLEEIQTVV----------  338 (388)
T ss_pred             -----hh----------hhHHh---hhhhhcccccceeecCC--cccccccHHHHHHhhhchhhhhhhee----------
Confidence                 11          23333   56899999999999997  68899999999999998666655555          


Q ss_pred             ceeeeeecccccccccccCCCCCCccccCCCchhHHHHHHHhcCcCccCCCCchHHHHHHHhhhccCCCChhHHHHH
Q 011053          401 KEIETLVPSSITELSNLCDFDQSNCKGMHPSTADVLTVLLLALPQHTWSGIKEEELRMQFNHLASVDKLPSLLQQEV  477 (494)
Q Consensus       401 ~~~d~l~p~~~~~~~~~~~~~~~~~~~~~p~~~dvlt~lllal~~~tw~~i~~~~l~~e~~~l~s~~~lp~~l~~ev  477 (494)
                                                 .+|+.+||.|+|||||||+||+||||..|..|+.++.+.-+.|.++|.||
T Consensus       339 ---------------------------aev~~s~v~taLllAlp~q~~~~~k~dsl~~~~k~~~~~~S~~t~~~~~~  388 (388)
T KOG0632|consen  339 ---------------------------AEVEGSDVFTALLLALPPQTWSGIKDDSLTHEMKQLISMCSSPTLLQTEV  388 (388)
T ss_pred             ---------------------------eecccchHHHHHHHhcCcccccccccHHHHHHHHHHHhhcccHhhhhccC
Confidence                                       47899999999999999999999999999999999999999999999985

>PF09328 Phytochelatin_C: Domain of unknown function (DUF1984); InterPro: IPR015407 This entry represents the C-terminal region of plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2	Back alignment and domain information

>PF05023 Phytochelatin: Phytochelatin synthase; InterPro: IPR007719 This entry represents plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2	Back alignment and domain information

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A	Back alignment and domain information

>cd02549 Peptidase_C39A A sub-family of peptidase family C39	Back alignment and domain information

>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification	Back alignment and domain information

>cd02418 Peptidase_C39B A sub-family of peptidase family C39	Back alignment and domain information

>cd02259 Peptidase_C39_like Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria	Back alignment and domain information

>cd02424 Peptidase_C39E A sub-family of peptidase family C39	Back alignment and domain information

>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase	Back alignment and domain information

>cd02420 Peptidase_C39D A sub-family of peptidase family C39	Back alignment and domain information

>cd02423 Peptidase_C39G A sub-family of peptidase family C39	Back alignment and domain information

>cd02425 Peptidase_C39F A sub-family of peptidase family C39	Back alignment and domain information

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein	Back alignment and domain information

>cd02419 Peptidase_C39C A sub-family of peptidase family C39	Back alignment and domain information

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter	Back alignment and domain information

>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised	Back alignment and domain information

>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate	Back alignment and domain information

>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases	Back alignment and domain information

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family	Back alignment and domain information

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	Back alignment and domain information

>cd02421 Peptidase_C39_likeD A sub-family of peptidase family C39	Back alignment and domain information

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family	Back alignment and domain information

>COG3271 Predicted double-glycine peptidase [General function prediction only]	Back alignment and domain information

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		494
2btw_B		254	Crystal Structure Of Alr0975 Length = 254		2e-24
2btw_A		254	Crystal Structure Of Alr0975 Length = 254		2e-24

>pdb|2BTW|B Chain B, Crystal Structure Of Alr0975 Length = 254

Back alignment and structure

Iteration: 1

Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/213 (31%), Positives = 101/213 (47%), Gaps = 10/213 (4%) Query: 13 SPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGXXXXXXXXXXXXID- 71 SP I F S +G+KL L + E FF L + TQ AYCG I+ Sbjct: 41 SPNLIGFNSNEGEKLL---LTSRSREDFFPLSXQFVTQVNQAYCGVASIIXVLNSLGINA 97 Query: 72 PGRTWKGPWRWFDDTMLDCCEPLSKI------KDEGITFGKVSCLAFCNGANVEAFRTNE 125 P P+R F E + +G T ++ L G V+ ++ Sbjct: 98 PETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVAKQGXTLDELGRLIASYGVKVKVNHASD 157 Query: 126 SSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARFK 185 ++I++FR+ V + + + VI +Y R Q GH SP+ Y+ D LI DV+R+K Sbjct: 158 TNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIXDVSRYK 217 Query: 186 YPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSR 218 YPP WV T LW+A +T+D+ + RGF+ VS+ Sbjct: 218 YPPVWVKTTDLWKAXNTVDSVSQKTRGFVFVSK 250

PyMOL of 2btw

>pdb|2BTW|A Chain A, Crystal Structure Of Alr0975 Length = 254

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		494
2bu3_A		254	ALR0975 protein; phytochelatin synthase, PCS, acyl	1e-98
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07

>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B Length = 254	Back alignment and structure

 Score =  296 bits (759), Expect = 1e-98
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 10/222 (4%)

Query: 4   AGVYRRVLPSPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLASLAV 63
             + + +  SP  I F S +G+KL + +    + E FF L   + TQ   AYCG+AS+ +
Sbjct: 32  MKLEQTLTLSPNLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIM 88

Query: 64  VLNALAID-PGRTWKGPWRWFDDTML------DCCEPLSKIKDEGITFGKVSCLAFCNGA 116
           VLN+L I+ P      P+R F                   +  +G+T  ++  L    G 
Sbjct: 89  VLNSLGINAPETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGV 148

Query: 117 NVEAFRTNESSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMV 176
            V+    ++++I++FR+ V  +   + + VI +Y R    Q   GH SP+  Y+   D  
Sbjct: 149 KVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRF 208

Query: 177 LILDVARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSR 218
           LI+DV+R+KYPP WV  T LW+AM+T+D+ +   RGF+ VS+
Sbjct: 209 LIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSK 250

PyMOL of 2bu3

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		494
2bu3_A		254	ALR0975 protein; phytochelatin synthase, PCS, acyl	100.0
3k8u_A		156	Putative ABC transporter, ATP-binding protein COMA	98.18
3b79_A		129	Toxin secretion ATP-binding protein; alpha-beta st	97.83
3zua_A		142	CLD, alpha-hemolysin translocation ATP-binding pro	97.67
3erv_A		236	Putative C39-like peptidase; structural genomics,	97.31

>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B	Back alignment and structure

Probab=100.00  E-value=3.8e-80  Score=605.47  Aligned_cols=216  Identities=33%  Similarity=0.610  Sum_probs=192.8

Q ss_pred             CccccccccCCCCCccccCChhhHHHHHHHHhcCCcccccccchhcccCCCCCcccHHHHHHHHHhcccC-CCCCcCCCc
Q 011053            2 AVAGVYRRVLPSPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLASLAVVLNALAID-PGRTWKGPW   80 (494)
Q Consensus         2 ~~~sfyrr~LP~p~~I~f~S~EGk~Lf~eAl~~g~~e~ff~La~~F~TQ~npayCGvASlamVLNAL~id-P~r~wkgpw   80 (494)
                      +|++||+|+||+ ++|+|+|+||++||.+|   |+|++||+|++||+||+|++||||||++||||||++| |++.|||||
T Consensus        31 ~~~~~~~~~lp~-~~i~~~S~eG~~ll~~a---~~~~~ff~L~~qf~tQ~n~ayCGlASlaMVLNALgid~P~~~wk~pw  106 (254)
T 2bu3_A           31 HMKLEQTLTLSP-NLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINAPETAQYSPY  106 (254)
T ss_dssp             ---------CCT-TCEETTSHHHHHHHHHC---SBCTTHHHHHHHCCCCSSTTCHHHHHHHHHHHHTTCCC--------C
T ss_pred             hhhhccccCCCh-hhccccCHHHHHHHHhC---CCchhhhcccccccccCCCCchHHHHHHHHHHhhCCCCCCccccCce
Confidence            578999999995 89999999999999998   8999999999999999999999999999999999999 999999999


Q ss_pred             ccc-ccchhc-----cccchhhhhhcCCCHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHhhCCCCceEEEEeeccc
Q 011053           81 RWF-DDTMLD-----CCEPLSKIKDEGITFGKVSCLAFCNGANVEAFRTNESSIDEFRRHVISSASSEDSHVITSYHRGV  154 (494)
Q Consensus        81 rwf-~e~mLd-----~c~~le~V~~~GiTL~Ela~LA~c~G~~V~~~ra~~~sldeFR~~l~~~~ss~~~~vIVNy~R~~  154 (494)
                      ||| +|+||+     ||.+++.|+++||||+||+|||+|+|++|++|++++.++++||+.|++++++++++|||||+|++
T Consensus       107 r~~Tqe~mld~~~~~~~~~~~~v~~~GiTL~el~~La~c~G~~v~~y~a~~~sl~~fR~~v~~~~~~~~~~vvvny~R~~  186 (254)
T 2bu3_A          107 RVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKE  186 (254)
T ss_dssp             CCCCTTTTTC---CTTTSCHHHHHHHCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEEEEEEEEGGG
T ss_pred             eeechHhHhcccccccccChhhhccCCcCHHHHHHHHHhCCceEEEEECCcCcHHHHHHHHHHHhCCCCcEEEEEeEccc
Confidence            999 689998     99999999999999999999999999999999999999999999999999989999999999999


Q ss_pred             ccccCCccccccceeccCCCeeEEEecCCCCCCceeeehHHHHHhhcccCCcCCCceeEEEEecCCC
Q 011053          155 FKQTGTGHFSPIGGYHAGKDMVLILDVARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVSRIPK  221 (494)
Q Consensus       155 LgQtG~GHFSPIGGYh~~tD~VLILDVARfKYpP~WVpl~~L~eAM~tiD~~sgrsRG~ilis~~~~  221 (494)
                      |+|+|+||||||||||+++|+||||||||||||||||++++||+||+++|++||++||||+|++.++
T Consensus       187 l~q~G~GHfSPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am~~~D~~s~~~RG~~li~~~~~  253 (254)
T 2bu3_A          187 IGQERGGHISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVSKTQD  253 (254)
T ss_dssp             GTCSSSEEEEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSEETTTTEECEEEEEEC---
T ss_pred             cCCCCCCceeceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHHhcccccCCCcceEEEEecccC
Confidence            9999999999999999999999999999999999999999999999999999999999999998763

PyMOL of 2bu3

>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}	Back alignment and structure

>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}	Back alignment and structure

>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}	Back alignment and structure

>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		494
d2bu3a1		210	d.3.1.14 (A:29-238) Primitive phytochelatin syntha	1e-99

>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase {Nostoc sp. pcc 7120 [TaxId: 103690]} Length = 210	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Phytochelatin synthase
domain: Primitive phytochelatin synthase
species: Nostoc sp. pcc 7120 [TaxId: 103690]

 Score =  296 bits (759), Expect = 1e-99
 Identities = 72/212 (33%), Positives = 112/212 (52%), Gaps = 10/212 (4%)

Query: 13  SPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLASLAVVLNALAID- 71
           SP  I F S +G+KL + +    + E FF L   + TQ   AYCG+AS+ +VLN+L I+ 
Sbjct: 2   SPNLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINA 58

Query: 72  PGRTWKGPWRWFDDTML------DCCEPLSKIKDEGITFGKVSCLAFCNGANVEAFRTNE 125
           P      P+R F                   +  +G+T  ++  L    G  V+    ++
Sbjct: 59  PETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASD 118

Query: 126 SSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHFSPIGGYHAGKDMVLILDVARFK 185
           ++I++FR+ V  +   + + VI +Y R    Q   GH SP+  Y+   D  LI+DV+R+K
Sbjct: 119 TNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDRFLIMDVSRYK 178

Query: 186 YPPHWVPLTLLWEAMDTIDNATGHRRGFMTVS 217
           YPP WV  T LW+AM+T+D+ +   RGF+ VS
Sbjct: 179 YPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVS 210

PyMOL of d2bu3a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		494
d2bu3a1		210	Primitive phytochelatin synthase {Nostoc sp. pcc 7	100.0

>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase {Nostoc sp. pcc 7120 [TaxId: 103690]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Phytochelatin synthase
domain: Primitive phytochelatin synthase
species: Nostoc sp. pcc 7120 [TaxId: 103690]

Probab=100.00  E-value=8e-77  Score=566.17  Aligned_cols=203  Identities=35%  Similarity=0.646  Sum_probs=189.9

Q ss_pred             CCCCCccccCChhhHHHHHHHHhcCCcccccccchhcccCCCCCcccHHHHHHHHHhcccC-CCCCcCCCccccccchh-
Q 011053           11 LPSPPAIEFASPQGKKLFIEALEGGTMEGFFKLISYYQTQSEPAYCGLASLAVVLNALAID-PGRTWKGPWRWFDDTML-   88 (494)
Q Consensus        11 LP~p~~I~f~S~EGk~Lf~eAl~~g~~e~ff~La~~F~TQ~npayCGvASlamVLNAL~id-P~r~wkgpwrwf~e~mL-   88 (494)
                      ||+ ++|+|+|+|||+||.+|   |+|++||+|++||+||+||+||||||++||||||+|| |.+.|++|||||+|+++ 
T Consensus         1 lp~-~~i~~~S~eG~~ll~~~---~~~~~~~~L~~~f~tQ~~~ayCG~ASl~mvLNaL~id~P~~~~~~p~~~~tq~~l~   76 (210)
T d2bu3a1           1 LSP-NLIGFNSNEGEKLLLTS---RSREDFFPLSMQFVTQVNQAYCGVASIIMVLNSLGINAPETAQYSPYRVFTQDNFF   76 (210)
T ss_dssp             CCT-TCEETTSHHHHHHHHHC---SBCTTHHHHHHHCCCCSSTTCHHHHHHHHHHHHTTCCC--------CCCCCTTTTT
T ss_pred             CCc-ccccccCHHHHHHHHhC---ccchhHHHHHHHHhhccCCCeeHHHHHHHHHHhcCCCCCCccccCccccccccccc
Confidence            675 89999999999999885   8999999999999999999999999999999999999 99999999999999888 


Q ss_pred             -----ccccchhhhhhcCCCHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHhhCCCCceEEEEeecccccccCCccc
Q 011053           89 -----DCCEPLSKIKDEGITFGKVSCLAFCNGANVEAFRTNESSIDEFRRHVISSASSEDSHVITSYHRGVFKQTGTGHF  163 (494)
Q Consensus        89 -----d~c~~le~V~~~GiTL~Ela~LA~c~G~~V~~~ra~~~sldeFR~~l~~~~ss~~~~vIVNy~R~~LgQtG~GHF  163 (494)
                           +||.+.+.++++||||+||+|+|+|+|++|+++|+++.++++||++|++++++++++|||||+|++++|+|+|||
T Consensus        77 ~~~~~~~~~~~~~v~~~G~Tl~el~~la~~~g~~v~~~~~~~~s~d~FR~~v~~~~~~~~~~vivny~r~~l~q~G~GHf  156 (210)
T d2bu3a1          77 SNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHI  156 (210)
T ss_dssp             C---CTTTSCHHHHHHHCCCHHHHHHHHHTTTCEEEEEEGGGSCHHHHHHHHHHHHTCTTEEEEEEEEGGGGTCSSSEEE
T ss_pred             cchhhhhccCHHHHHHcCCcHHHHHHHHHhCCCeeEEEeCCcccHHHHHHHHHHHhCCCCCEEEEEecCcccCcCCCcce
Confidence                 688899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeccCCCeeEEEecCCCCCCceeeehHHHHHhhcccCCcCCCceeEEEEe
Q 011053          164 SPIGGYHAGKDMVLILDVARFKYPPHWVPLTLLWEAMDTIDNATGHRRGFMTVS  217 (494)
Q Consensus       164 SPIGGYh~~tD~VLILDVARfKYpP~WVpl~~L~eAM~tiD~~sgrsRG~ilis  217 (494)
                      |||||||+++|+|||||||||||||||||+++||+||+++|++||++||||+|+
T Consensus       157 SPI~gY~~~~d~vlilDvar~kypp~Wv~~~~L~~am~t~D~~t~~~RG~i~is  210 (210)
T d2bu3a1         157 SPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTVDSVSQKTRGFVFVS  210 (210)
T ss_dssp             EEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSEETTTTEECEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEecCcccCCCeEeEHHHHHHHHhccccCCCCcceEEEeC
Confidence            999999999999999999999999999999999999999999999999999996

PyMOL of d2bu3a1