Citrus Sinensis ID: 011056
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FE59 | 510 | Sucrose transport protein | yes | no | 0.981 | 0.950 | 0.708 | 0.0 | |
| A2ZN77 | 501 | Sucrose transport protein | N/A | no | 0.923 | 0.910 | 0.637 | 1e-170 | |
| Q0ILJ3 | 501 | Sucrose transport protein | yes | no | 0.925 | 0.912 | 0.637 | 1e-170 | |
| Q39231 | 512 | Sucrose transport protein | no | no | 0.961 | 0.927 | 0.500 | 1e-136 | |
| Q67YF8 | 491 | Sucrose transport protein | no | no | 0.939 | 0.945 | 0.508 | 1e-131 | |
| Q9FG00 | 491 | Sucrose transport protein | no | no | 0.943 | 0.949 | 0.5 | 1e-130 | |
| Q9ZVK6 | 492 | Sucrose transport protein | no | no | 0.927 | 0.930 | 0.518 | 1e-128 | |
| Q39232 | 513 | Sucrose transport protein | no | no | 0.975 | 0.939 | 0.498 | 1e-128 | |
| Q03411 | 525 | Sucrose transport protein | N/A | no | 0.933 | 0.878 | 0.530 | 1e-128 | |
| Q6A329 | 492 | Putative sucrose transpor | no | no | 0.945 | 0.949 | 0.509 | 1e-127 |
| >sp|Q9FE59|SUC4_ARATH Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2 | Back alignment and function desciption |
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Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/512 (70%), Positives = 417/512 (81%), Gaps = 27/512 (5%)
Query: 3 QDERQR--------SKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLL 54
QD R R ++ S+SR V PP R+KV R LL+VASVA GIQFGWALQLSLL
Sbjct: 6 QDRRHRVTRNRPPIARPSTSSSRPVVSPP-RSKVSKRVLLRVASVACGIQFGWALQLSLL 64
Query: 55 TPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114
TPYVQELGIPHAWAS+IWLCGP+SGLFVQPLVGH SDRCTS++GRRRPFIV GA++I+++
Sbjct: 65 TPYVQELGIPHAWASVIWLCGPLSGLFVQPLVGHSSDRCTSKYGRRRPFIVAGAVAISIS 124
Query: 115 VLLIGLSADIGWLLGDR-GDFRPRAIAVFVFGFWILDVANNMTQG-----------KDHR 162
V++IG +ADIGW GDR G +PRAI FV GFWILDVANNMTQG D+R
Sbjct: 125 VMVIGHAADIGWAFGDREGKIKPRAIVAFVLGFWILDVANNMTQGPCRALLADLTENDNR 184
Query: 163 RTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIA 222
RTRVAN YFSLFMAVGN+LGYATGS++GW+KI FT T ACNV+CANLKSAF++DV+FIA
Sbjct: 185 RTRVANGYFSLFMAVGNVLGYATGSYNGWYKIFTFTKTVACNVECANLKSAFYIDVVFIA 244
Query: 223 ITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIV 282
ITT +S SAAHEVPL S + E H Q+S EAFL E+FGTFRYF G +WIIL+V
Sbjct: 245 ITTILSVSAAHEVPLAS------LASEAHGQTSGTDEAFLSEIFGTFRYFPGNVWIILLV 298
Query: 283 TALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 342
TALTW+GWFPF+LFDTDWMGREIYGGEPN G +Y+ GV MGALGLMLNSV LGITSVLME
Sbjct: 299 TALTWIGWFPFILFDTDWMGREIYGGEPNIGTSYSAGVSMGALGLMLNSVFLGITSVLME 358
Query: 343 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILG 402
KLCRKWGAGF+WGISNILMA+CFL M+I +VA H+ Y GH+ PP IV AA++IFTILG
Sbjct: 359 KLCRKWGAGFVWGISNILMAICFLGMIITSFVASHLGYIGHEQPPASIVFAAVLIFTILG 418
Query: 403 GPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSP 462
PLAITYSVPYAL+SIR ESLGLGQGLSLGVLNLAIVIPQ++VS+GSGPWDQLFGGGNSP
Sbjct: 419 IPLAITYSVPYALISIRIESLGLGQGLSLGVLNLAIVIPQVIVSVGSGPWDQLFGGGNSP 478
Query: 463 AFAVGGISALAGGLIAILAIPRSSAQKPRALP 494
A AVG + GG++AILA+PR+ QKP LP
Sbjct: 479 ALAVGAATGFIGGIVAILALPRTRIQKPIPLP 510
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Arabidopsis thaliana (taxid: 3702) |
| >sp|A2ZN77|SUT2_ORYSI Sucrose transport protein SUT2 OS=Oryza sativa subsp. indica GN=SUT2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 599 bits (1544), Expect = e-170, Method: Compositional matrix adjust.
Identities = 310/486 (63%), Positives = 381/486 (78%), Gaps = 30/486 (6%)
Query: 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLV 86
KVPLRKLL+ ASVA G+QFGWALQLSLLTPYVQELGIPHA+AS++WLCGP+SGL VQPLV
Sbjct: 21 KVPLRKLLRAASVACGVQFGWALQLSLLTPYVQELGIPHAFASLVWLCGPLSGLLVQPLV 80
Query: 87 GHFSDR---CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR---GDFRPRAIA 140
GH SDR S GRRRPFI GA SIA AVL +G SAD+G + GD G R AI
Sbjct: 81 GHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRIFGDSITPGSTRLGAII 140
Query: 141 VFVFGFWILDVANNMTQG-----------KDHRRTRVANAYFSLFMAVGNILGYATGSFS 189
V++ GFW+LDV NN TQG D RRTR+ANAYFSLFMA+GNILGYATG++S
Sbjct: 141 VYLVGFWLLDVGNNATQGPCRAFLADLTENDPRRTRIANAYFSLFMALGNILGYATGAYS 200
Query: 190 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE-VPLGSHDQSAPFSE 248
GW+KI PFT+T +C++ CANLKSAF LD+I + +TTCI+ ++ E LGS + P +E
Sbjct: 201 GWYKIFPFTVTPSCSISCANLKSAFLLDIIILVVTTCITVASVQEPQSLGSDEADHPSTE 260
Query: 249 EGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGG 308
+ EAFLWELFG+FRYF+ +W++LIVTALTW+GWFPF+LFDTDWMGREIY G
Sbjct: 261 Q---------EAFLWELFGSFRYFTLPVWMVLIVTALTWIGWFPFILFDTDWMGREIYRG 311
Query: 309 EPNE---GQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCF 365
P++ Q+Y GVRMG+ GLMLNSV+LG TS+++EKLCRKWGAG +WG+SNILMALCF
Sbjct: 312 SPDDPSITQSYHDGVRMGSFGLMLNSVLLGFTSIVLEKLCRKWGAGLVWGVSNILMALCF 371
Query: 366 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 425
+AML++ YVA +MDY +PP GIVIA+L++FTILG PLAITYS+PYA+ + R E+LGL
Sbjct: 372 VAMLVITYVAKNMDYPPSGVPPTGIVIASLVVFTILGAPLAITYSIPYAMAASRVENLGL 431
Query: 426 GQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485
GQGL++G+LNLAIVIPQ++VS+GSGPWDQLFGGGN+PAFAV ++ GGL+AIL +PR+
Sbjct: 432 GQGLAMGILNLAIVIPQVIVSLGSGPWDQLFGGGNAPAFAVAAAASFIGGLVAILGLPRA 491
Query: 486 SAQKPR 491
R
Sbjct: 492 RIASRR 497
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). May also transport other glucosides. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q0ILJ3|SUT2_ORYSJ Sucrose transport protein SUT2 OS=Oryza sativa subsp. japonica GN=SUT2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 598 bits (1541), Expect = e-170, Method: Compositional matrix adjust.
Identities = 309/485 (63%), Positives = 379/485 (78%), Gaps = 28/485 (5%)
Query: 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLV 86
KVPLRKLL+ ASVA G+QFGWALQLSLLTPYVQELGIPHA+AS++WLCGP+SGL VQPLV
Sbjct: 21 KVPLRKLLRAASVACGVQFGWALQLSLLTPYVQELGIPHAFASLVWLCGPLSGLLVQPLV 80
Query: 87 GHFSDR---CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR---GDFRPRAIA 140
GH SDR S GRRRPFI GA SIA AVL +G SAD+G + GD G R AI
Sbjct: 81 GHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRIFGDSITPGSTRLGAII 140
Query: 141 VFVFGFWILDVANNMTQG-----------KDHRRTRVANAYFSLFMAVGNILGYATGSFS 189
V++ GFW+LDV NN TQG D RRTR+ANAYFSLFMA+GNILGYATG++S
Sbjct: 141 VYLVGFWLLDVGNNATQGPCRAFLADLTENDPRRTRIANAYFSLFMALGNILGYATGAYS 200
Query: 190 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE 249
GW+KI PFT+T +C++ CANLKSAF LD+I + +TTCI+ ++ E QS F +
Sbjct: 201 GWYKIFPFTVTPSCSISCANLKSAFLLDIIILVVTTCITVASVQE------PQS--FGSD 252
Query: 250 GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGE 309
+ S EAFLWELFG+FRYF+ +W++LIVTALTW+GWFPF+LFDTDWMGREIY G
Sbjct: 253 EADHPSTEQEAFLWELFGSFRYFTLPVWMVLIVTALTWIGWFPFILFDTDWMGREIYRGS 312
Query: 310 PNE---GQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFL 366
P++ Q+Y GVRMG+ GLMLNSV+LG TS+++EKLCRKWGAG +WG+SNILMALCF+
Sbjct: 313 PDDPSITQSYHDGVRMGSFGLMLNSVLLGFTSIVLEKLCRKWGAGLVWGVSNILMALCFV 372
Query: 367 AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 426
AML++ YVA +MDY +PP GIVIA+L++FTILG PLAITYS+PYA+ + R E+LGLG
Sbjct: 373 AMLVITYVAKNMDYPPSGVPPTGIVIASLVVFTILGAPLAITYSIPYAMAASRVENLGLG 432
Query: 427 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 486
QGL++G+LNLAIVIPQ++VS+GSGPWDQLFGGGN+PAFAV ++ GGL+AIL +PR+
Sbjct: 433 QGLAMGILNLAIVIPQVIVSLGSGPWDQLFGGGNAPAFAVAAAASFIGGLVAILGLPRAR 492
Query: 487 AQKPR 491
R
Sbjct: 493 IASRR 497
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). May also transport other glucosides. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q39231|SUC2_ARATH Sucrose transport protein SUC2 OS=Arabidopsis thaliana GN=SUC2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 257/513 (50%), Positives = 333/513 (64%), Gaps = 38/513 (7%)
Query: 2 PQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQEL 61
P ++ S T P R LRK++ V+S+A G+QFGWALQLSLLTPYVQ L
Sbjct: 5 PMEKAANGASALETQTGELDQPER----LRKIISVSSIAAGVQFGWALQLSLLTPYVQLL 60
Query: 62 GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121
GIPH WAS+IWLCGP+SG+ VQP+VG+ SDRCTSRFGRRRPFIV GA + VAV LIG +
Sbjct: 61 GIPHKWASLIWLCGPISGMLVQPIVGYHSDRCTSRFGRRRPFIVAGAGLVTVAVFLIGYA 120
Query: 122 ADIGWLLGDRGDFRP--RAIAVFVFGFWILDVANNMTQGK-----------DHRRTRVAN 168
ADIG +GD+ D P RAIA+F GFWILDVANN QG + ++TR AN
Sbjct: 121 ADIGHSMGDQLDKPPKTRAIAIFALGFWILDVANNTLQGPCRAFLADLSAGNAKKTRTAN 180
Query: 169 AYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 228
A+FS FMAVGN+LGYA GS+ +K++PFT+T +C++ CANLK+ FFL + + I T +S
Sbjct: 181 AFFSFFMAVGNVLGYAAGSYRNLYKVVPFTMTESCDLYCANLKTCFFLSITLLLIVTFVS 240
Query: 229 ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWL 288
E P++ E + F E+FG F+ +W++LIVTAL W+
Sbjct: 241 LCYVKE---------KPWTPEPTADGKASNVPFFGEIFGAFKELKRPMWMLLIVTALNWI 291
Query: 289 GWFPFLLFDTDWMGREIYGGEPN------EGQNYATGVRMGALGLMLNSVVLGITSVLME 342
WFPFLLFDTDWMGRE+YGG + + Y GVR GALGLMLN++VLG S+ +E
Sbjct: 292 AWFPFLLFDTDWMGREVYGGNSDATATAASKKLYNDGVRAGALGLMLNAIVLGFMSLGVE 351
Query: 343 KLCRKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGH----DLPPNGIVIAALII 397
+ RK GA +WGI N ++A+C LAM ++ R H PP + AL +
Sbjct: 352 WIGRKLGGAKRLWGIVNFILAIC-LAMTVVVTKQAENHRRDHGGAKTGPPGNVTAGALTL 410
Query: 398 FTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457
F ILG P AIT+S+P+AL SI + + G GQGLSLGVLNLAIV+PQ+V+S+G GP+D+LFG
Sbjct: 411 FAILGIPQAITFSIPFALASIFSTNSGAGQGLSLGVLNLAIVVPQMVISVGGGPFDELFG 470
Query: 458 GGNSPAFAVGGISALAGGLIAILAIPRSSAQKP 490
GGN PAF +G I+A G++A+ +P P
Sbjct: 471 GGNIPAFVLGAIAAAVSGVLALTVLPSPPPDAP 503
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport other glucosides such as maltose, arbutin (hydroquinone-beta-D-glucoside), salicin (2-(hydroxymethyl)phenyl-beta-D-glucoside), alpha-phenylglucoside, beta-phenylglucoside, alpha-paranitrophenylglucoside, beta-paranitrophenylglucoside, and paranitrophenyl-beta-thioglucoside. May also transport biotin. Required for apoplastic phloem sucrose loading in source tissues (e.g leaves) in order to transport it to sink tissues (e.g. roots, flowers). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q67YF8|SUC7_ARATH Sucrose transport protein SUC7 OS=Arabidopsis thaliana GN=SUC7 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 468 bits (1205), Expect = e-131, Method: Compositional matrix adjust.
Identities = 255/501 (50%), Positives = 332/501 (66%), Gaps = 37/501 (7%)
Query: 4 DERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGI 63
++ + + R S+S P+ PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+
Sbjct: 7 NKDETTVDRQSSSSVDLDGPS----PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGV 62
Query: 64 PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123
PH W S IWLCGPVSGL VQP VG+FSDRCTSRFGRRRPFI GA+ +AV+V+LIG +AD
Sbjct: 63 PHKWPSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVSVVLIGYAAD 122
Query: 124 IGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGK-----------DHRRTRVANAY 170
G +GD+ D + RA+ +F GFWILDVANN QG D ++TR ANA+
Sbjct: 123 FGHSMGDKIDKPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAQKTRTANAF 182
Query: 171 FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 230
FS FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 183 FSFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIALW 242
Query: 231 AAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGW 290
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+ W
Sbjct: 243 YVED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIAW 291
Query: 291 FPFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLCR 346
FPFLL+DTDWMGRE+YGG+ Y G+ +GALGLMLNS+VLG+ S+ +E + R
Sbjct: 292 FPFLLYDTDWMGREVYGGDSKGDDKMKKLYNQGIHVGALGLMLNSIVLGVMSLGIEGISR 351
Query: 347 KW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTILG 402
K GA +WG NI++A+C LAM +L R LP +GI AL +F +LG
Sbjct: 352 KMGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLG 410
Query: 403 GPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSP 462
PLAIT+S+P+AL SI + S G GQ LSLGVLN+AIVIPQ++VS G GP D LFG GN P
Sbjct: 411 IPLAITFSIPFALASIISSSSGAGQRLSLGVLNMAIVIPQMIVSFGVGPIDALFGDGNLP 470
Query: 463 AFAVGGISALAGGLIAILAIP 483
F VG I+A ++A +P
Sbjct: 471 GFVVGAIAAAVSSIVAFTVLP 491
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May be responsible for the transport of glucosides into the cell, with the concomitant uptake of protons (symport system). Does not seem to transport sucrose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG00|SUC9_ARATH Sucrose transport protein SUC9 OS=Arabidopsis thaliana GN=SUC9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust.
Identities = 250/500 (50%), Positives = 334/500 (66%), Gaps = 34/500 (6%)
Query: 3 QDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELG 62
+++ ++S+S V P+ PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG
Sbjct: 7 KEDAAPVDRQSSSSVVVPDEPS----PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLG 62
Query: 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122
+PH W+S IWLCGP+SGL VQP VG+FSDRC SRFGRRRPFI GA+ +A+AV+LIG +A
Sbjct: 63 VPHKWSSFIWLCGPISGLLVQPTVGYFSDRCKSRFGRRRPFIATGALLVALAVILIGFAA 122
Query: 123 DIGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGK-----------DHRRTRVANA 169
D G +GD+ D + RA+ FV GFWILDVANN QG D ++TR ANA
Sbjct: 123 DFGHTMGDKLDEAVKIRAVGFFVVGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANA 182
Query: 170 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 229
FS FMAVGN+LGYA GS++ KI PFT+T AC++ CANLKS F + + + + T I+
Sbjct: 183 IFSFFMAVGNVLGYAAGSYTNLHKIFPFTVTKACDIYCANLKSCFIISITLLIVLTIIAL 242
Query: 230 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 289
+ Q +P ++ +E++ F E+FG F+ +W++L VTAL W+
Sbjct: 243 WYVED------KQWSPNADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLAVTALNWIA 291
Query: 290 WFPFLLFDTDWMGREIYG----GEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 345
WFPFLL+DTDWMGRE+YG G+ + Y G+++G+LGLMLNS+VLG+ S+++ +
Sbjct: 292 WFPFLLYDTDWMGREVYGGDSAGDDKMKKLYNHGIQVGSLGLMLNSIVLGVMSLVIGVIS 351
Query: 346 RKWGAGFIWGISNILMALCF-LAMLILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGG 403
+K GA +WG NI++A+C + +L+ H G LP N I AL +F ILG
Sbjct: 352 KKIGAKRLWGAVNIILAVCLAMTVLVTKKAEEHRKIAGRMALPTNAIRDGALSLFAILGI 411
Query: 404 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPA 463
PLAIT+S+P+AL SI + S G GQGLSLGVLN+AIVIPQ++VS G GP D LFGGGN P
Sbjct: 412 PLAITFSIPFALASIISSSSGAGQGLSLGVLNMAIVIPQMIVSFGVGPIDALFGGGNLPG 471
Query: 464 FAVGGISALAGGLIAILAIP 483
F VG I+AL ++A+ +P
Sbjct: 472 FVVGAIAALISSVVALTVLP 491
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High-affinity sucrose transporter. Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport a wide range of glucosides, such as helicin, salicin, arbutin, maltose, fraxin, esculin, uranose, alpha-methylglucoside, alpha-phenylglucoside and beta-phenylglucoside. Plays a role in flowering time transition delay. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZVK6|SUC8_ARATH Sucrose transport protein SUC8 OS=Arabidopsis thaliana GN=SUC8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 259/500 (51%), Positives = 331/500 (66%), Gaps = 42/500 (8%)
Query: 5 ERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
+RQ S S A PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+P
Sbjct: 14 DRQSSSSLADLD---------GPSPLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVP 64
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H W+S IWLCGPVSGL VQP VG+FSDRCTSRFGRRRPFI GA+ +AVAV+LIG +AD
Sbjct: 65 HKWSSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVAVVLIGYAADF 124
Query: 125 GWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGK-----------DHRRTRVANAYF 171
G +GD+ D + RA+ +F GFWILDVANN QG D ++TR ANA+F
Sbjct: 125 GHSMGDKIDKPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFF 184
Query: 172 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 231
S FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 185 SFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWY 244
Query: 232 AHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWF 291
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+ WF
Sbjct: 245 VED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWF 293
Query: 292 PFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK 347
PFLL+DTDWMGRE+YGG+ Y G+ +GALGLMLNS+VLGI S+ +E + +K
Sbjct: 294 PFLLYDTDWMGREVYGGDSKGDDKMKKLYNQGIHVGALGLMLNSIVLGIVSLGIEGISKK 353
Query: 348 W-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTILGG 403
GA +WG NI++A+C LAM +L R LP +GI AL +F +LG
Sbjct: 354 IGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGI 412
Query: 404 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPA 463
PLAIT+S+P+AL SI + S G GQGLSLGVLN+AIVIPQ++VS G GP D LFGGGN P
Sbjct: 413 PLAITFSIPFALASIISSSSGAGQGLSLGVLNMAIVIPQMIVSFGVGPIDALFGGGNLPR 472
Query: 464 FAVGGISALAGGLIAILAIP 483
F VG I+A ++A +P
Sbjct: 473 FVVGAIAAAISSVVAFTVLP 492
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39232|SUC1_ARATH Sucrose transport protein SUC1 OS=Arabidopsis thaliana GN=SUC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust.
Identities = 253/508 (49%), Positives = 330/508 (64%), Gaps = 26/508 (5%)
Query: 5 ERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
E ++ A+ + PLRK++ VAS+A G+QFGWALQLSLLTPYVQ LGIP
Sbjct: 5 ETEKPTKDAAALETQSPEDFDQPSPLRKIISVASIAAGVQFGWALQLSLLTPYVQLLGIP 64
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H W+S+IWLCGPVSG+ VQP+VG SDRC S+FGRRRPFI GA +AVAV LIG +AD
Sbjct: 65 HKWSSLIWLCGPVSGMIVQPIVGFHSDRCRSKFGRRRPFIATGAALVAVAVFLIGYAADF 124
Query: 125 GWLLGDR--GDFRPRAIAVFVFGFWILDVANNMTQGK-----------DHRRTRVANAYF 171
G+ +GD+ + RAI +F GFWILDVANN QG D +RTRVANA+F
Sbjct: 125 GYKMGDKLEEKVKVRAIGIFALGFWILDVANNTLQGPCRAFLADLAAGDAKRTRVANAFF 184
Query: 172 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 231
S FMAVGN+LGYA GS++ K+ PFT+T AC++ CANLK+ FFL + + I T S
Sbjct: 185 SFFMAVGNVLGYAAGSYTNLHKMFPFTMTKACDIYCANLKTCFFLSITLLLIVTVTSLWY 244
Query: 232 AHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWF 291
++ P + + E++S V E+FG F+ +W++LIVTAL W+ WF
Sbjct: 245 VND----KQWSPPPRNADDDEKTSSV--PLFGEIFGAFKVMKRPMWMLLIVTALNWIAWF 298
Query: 292 PFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK 347
PFLLFDTDWMGRE++GG+ + + Y+ GV+ GA+GLM NS+VLG S+ +E + RK
Sbjct: 299 PFLLFDTDWMGREVFGGDSDGNERSKKLYSLGVQSGAMGLMFNSIVLGFMSLGVEWIGRK 358
Query: 348 W-GAGFIWGISN-ILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIA-ALIIFTILGGP 404
GA +WGI N IL A + +L+ + H G P+ V A AL +F +LG P
Sbjct: 359 LGGAKRLWGIVNFILAAGLAMTVLVTKFAEDHRKTAGDLAGPSASVKAGALSLFAVLGIP 418
Query: 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAF 464
LAIT+S P+AL SI + G GQGLSLGVLNLAIVIPQ++VS+G GP+D LFGGGN PAF
Sbjct: 419 LAITFSTPFALASIFSSCSGAGQGLSLGVLNLAIVIPQMIVSLGGGPFDALFGGGNLPAF 478
Query: 465 AVGGISALAGGLIAILAIPRSSAQKPRA 492
V I+A G++A+ +P P+A
Sbjct: 479 IVAAIAAAISGVLALTVLPSPPPDAPKA 506
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). This transport is both voltage- and energy-dependent. Can also transport other glucosides such as maltose, alpha-phenylglucoside and beta-phenylglucoside. May also transport biotin. Required for normal pollen germination and anthocyanin accumulation induced by sucrose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q03411|SUT_SPIOL Sucrose transport protein OS=Spinacia oleracea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 256/483 (53%), Positives = 322/483 (66%), Gaps = 22/483 (4%)
Query: 23 PARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFV 82
P A+ L+KL VASVA G+QFGWALQLSLLTPYVQ LGIPH WA+ IWLCGP+SG+ V
Sbjct: 28 PPEAEATLKKLGLVASVAAGVQFGWALQLSLLTPYVQLLGIPHTWAAYIWLCGPISGMIV 87
Query: 83 QPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD-RGDF-RPRAIA 140
QPLVG++SDRCTSRFGRRRPFI GA +AVAV LIG +ADIG GD G+ +PRAIA
Sbjct: 88 QPLVGYYSDRCTSRFGRRRPFIAAGAALVAVAVGLIGFAADIGAASGDPTGNVAKPRAIA 147
Query: 141 VFVFGFWILDVANNMTQGK-----------DHRRTRVANAYFSLFMAVGNILGYATGSFS 189
VFV GFWILDVANN QG +TR ANA+FS FMA+GNI GYA GS+S
Sbjct: 148 VFVVGFWILDVANNTLQGPCRALLADMAAGSQTKTRYANAFFSFFMALGNIGGYAAGSYS 207
Query: 190 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE 249
+ + PFT T+AC+V CANLKS FF+ + + + T ++ S E + + +
Sbjct: 208 RLYTVFPFTKTAACDVYCANLKSCFFISITLLIVLTILALSVVKERQITIDEIQEEEDLK 267
Query: 250 GHEQSSDVHE-AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGG 308
SS F +L G + + I+L+VTAL W+ WFPFLLFDTDWMG+E+YGG
Sbjct: 268 NRNNSSGCARLPFFGQLIGALKDLPKPMLILLLVTALNWIAWFPFLLFDTDWMGKEVYGG 327
Query: 309 EPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGFIWGISNILMALCFLA 367
EG+ Y GV GALGLM+NSVVLG+ S+ +E L R GA +WGI NI++A+C
Sbjct: 328 TVGEGKLYDQGVHAGALGLMINSVVLGVMSLSIEGLARMVGGAKRLWGIVNIILAVCLAM 387
Query: 368 MLILYYVAIHMDYRGHDL-------PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 420
+++ A H H + PP G+ AL IF +LG PLAIT+S+P+AL SI +
Sbjct: 388 TVLVTKSAEHFRDSHHIMGSAVPPPPPAGVKGGALAIFAVLGIPLAITFSIPFALASIFS 447
Query: 421 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480
S G GQGLSLGVLNLAIV+PQ+ VS+ SGPWD +FGGGN PAF VG ++A A +++
Sbjct: 448 ASSGSGQGLSLGVLNLAIVVPQMFVSVTSGPWDAMFGGGNLPAFVVGAVAATASAVLSFT 507
Query: 481 AIP 483
+P
Sbjct: 508 LLP 510
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. Spinacia oleracea (taxid: 3562) |
| >sp|Q6A329|SUC6_ARATH Putative sucrose transport protein SUC6 OS=Arabidopsis thaliana GN=SUC6 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust.
Identities = 256/502 (50%), Positives = 331/502 (65%), Gaps = 35/502 (6%)
Query: 5 ERQRSKSRASTSRAVARPPA--RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELG 62
+ Q +K A+ +R + A P+RK++ VAS+A GIQFGWALQLSLLTPYVQ LG
Sbjct: 3 DLQANKDAAAVNRQSSSSSADLNGPSPMRKMISVASIAAGIQFGWALQLSLLTPYVQLLG 62
Query: 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122
+PH W+S IWLCGPVSGL VQP VG+FSDRC SRFGRRRPFI GA+ +AVAV+LIG +A
Sbjct: 63 VPHKWSSFIWLCGPVSGLLVQPSVGYFSDRCKSRFGRRRPFIAMGALLVAVAVVLIGYAA 122
Query: 123 DIGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGK-----------DHRRTRVANA 169
D G +GD+ D + RA+ +F GFWILDVANN QG D ++TR ANA
Sbjct: 123 DFGHSMGDKVDEPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANA 182
Query: 170 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 229
+FS FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 183 FFSFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIAL 242
Query: 230 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 289
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+
Sbjct: 243 WYVED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIA 291
Query: 290 WFPFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLC 345
WFPFLL+DTDWMGRE+YGG+ Y G+ +G LGLMLNS+VLG S+ +E +
Sbjct: 292 WFPFLLYDTDWMGREVYGGDSKGDDKMKKLYNQGIHVGGLGLMLNSIVLGFMSLGIEGIS 351
Query: 346 RKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTIL 401
RK GA +WG NI++A+C LAM +L R LP +GI AL +F +L
Sbjct: 352 RKMGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALL 410
Query: 402 GGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNS 461
G PLAIT+S+P+AL SI + S G GQGLSLGVLN+ IVIPQ+VVS G GP D LFGGGN
Sbjct: 411 GIPLAITFSIPFALASIISSSSGAGQGLSLGVLNMTIVIPQMVVSFGVGPIDALFGGGNL 470
Query: 462 PAFAVGGISALAGGLIAILAIP 483
P F VG I+A ++A +P
Sbjct: 471 PGFVVGAIAAAISSVVAFSVLP 492
|
May be responsible for the transport of glucosides into the cell, with the concomitant uptake of protons (symport system). Does not seem to transport sucrose. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| 49609488 | 498 | putative sucrose-H+ symporter [Datisca g | 0.975 | 0.967 | 0.782 | 0.0 | |
| 118132677 | 498 | sucrose transporter 4 [Hevea brasiliensi | 0.977 | 0.969 | 0.765 | 0.0 | |
| 282154858 | 501 | sucrose transporter [Nicotiana tabacum] | 0.991 | 0.978 | 0.722 | 0.0 | |
| 38327323 | 499 | sucrose transporter [Malus x domestica] | 0.983 | 0.973 | 0.746 | 0.0 | |
| 225458976 | 501 | PREDICTED: sucrose transport protein SUC | 0.981 | 0.968 | 0.754 | 0.0 | |
| 5882292 | 501 | sucrose transporter [Vitis vinifera] | 0.981 | 0.968 | 0.752 | 0.0 | |
| 118132673 | 498 | sucrose transporter 5 [Hevea brasiliensi | 0.925 | 0.917 | 0.771 | 0.0 | |
| 74476785 | 496 | sucrose transporter type 4 [Manihot escu | 0.973 | 0.969 | 0.759 | 0.0 | |
| 6434829 | 501 | putative sucrose transporter [Vitis vini | 0.981 | 0.968 | 0.750 | 0.0 | |
| 350538461 | 500 | sucrose transporter [Solanum lycopersicu | 0.983 | 0.972 | 0.717 | 0.0 |
| >gi|49609488|emb|CAG70682.1| putative sucrose-H+ symporter [Datisca glomerata] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/493 (78%), Positives = 426/493 (86%), Gaps = 11/493 (2%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
A RA ARPP +A+V LRKLL+V+SVA GIQFGWALQLSLLTPYVQELGIPHAWAS+I
Sbjct: 5 EADRHRARARPPVQARVSLRKLLRVSSVACGIQFGWALQLSLLTPYVQELGIPHAWASVI 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGLFVQPLVGH SDRCTSRFGRRRPFIV GA+SI VAVL+IG SADIG L+GDR
Sbjct: 65 WLCGPLSGLFVQPLVGHMSDRCTSRFGRRRPFIVVGALSITVAVLIIGYSADIGSLIGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQG-----------KDHRRTRVANAYFSLFMAVGNI 180
G +P AIA FV GFWILDVANNMTQG KDHRRTRVANAYFSLFMAVGN+
Sbjct: 125 GTVKPGAIATFVVGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNV 184
Query: 181 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 240
LGYATGS+SGWFKI P TLTSACNV+CANLKSAF LD++FIAITT +S SAA E PL
Sbjct: 185 LGYATGSYSGWFKIFPLTLTSACNVNCANLKSAFLLDIVFIAITTYLSISAAQESPLDPT 244
Query: 241 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 300
D+SA +EEG SS EAFLWELFG FRYFS +IW+I VTALTW+GWFPFLLFDTDW
Sbjct: 245 DRSANITEEGPGPSSHTEEAFLWELFGAFRYFSASIWVIFFVTALTWIGWFPFLLFDTDW 304
Query: 301 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 360
MGREIYGG+PNEGQNY+TGVRMGALGLMLNSVVLGITSVLMEKLCR WGAGF+WG+SNIL
Sbjct: 305 MGREIYGGKPNEGQNYSTGVRMGALGLMLNSVVLGITSVLMEKLCRYWGAGFVWGVSNIL 364
Query: 361 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 420
M+LCFLAML++ +VA +DY GH LPP+ IV+AAL+IF ILG PLAITYSVPYAL+S R
Sbjct: 365 MSLCFLAMLVVTFVAKRIDYIGHKLPPDVIVVAALVIFAILGIPLAITYSVPYALISTRI 424
Query: 421 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480
ESLGLGQGLS+GVLNLAIVIPQ+VVS+GSGPWDQLFGGGNSPAFAV ++A A GL+AIL
Sbjct: 425 ESLGLGQGLSMGVLNLAIVIPQVVVSLGSGPWDQLFGGGNSPAFAVAAVAAFASGLVAIL 484
Query: 481 AIPRSSAQKPRAL 493
AIPRS AQKPRAL
Sbjct: 485 AIPRSRAQKPRAL 497
|
Source: Datisca glomerata Species: Datisca glomerata Genus: Datisca Family: Datiscaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118132677|gb|ABK60191.1| sucrose transporter 4 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/494 (76%), Positives = 415/494 (84%), Gaps = 11/494 (2%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
+A + RA ARPP +VPLR+LL+V SVAGGIQFGWALQLSLLTPYVQELGIPH WASII
Sbjct: 5 QAESHRARARPPVVRRVPLRQLLRVTSVAGGIQFGWALQLSLLTPYVQELGIPHKWASII 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGL VQPLVGH SDRC SRFGRRRPFI GA I AVL+IG SADIGWLLGDR
Sbjct: 65 WLCGPLSGLVVQPLVGHMSDRCNSRFGRRRPFIFAGAGLICFAVLIIGHSADIGWLLGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQG-----------KDHRRTRVANAYFSLFMAVGNI 180
G+ RPRAI VFVFGFWILDVANNMTQG KDHRRTRVANAYFSLFMAVGNI
Sbjct: 125 GNTRPRAIGVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 184
Query: 181 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 240
LGYATG+FS WFK+ PFT+TSACN DCANLKSAF+LD++F+ ITT +S +AA E PLG
Sbjct: 185 LGYATGAFSNWFKVFPFTVTSACNADCANLKSAFYLDIVFMVITTYLSITAAQESPLGLS 244
Query: 241 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 300
D+S P + + QSS EAFLWELFGTFRYF +W IL+VTAL W+GWFPFLLFDTDW
Sbjct: 245 DRSTPIAADVSGQSSHAQEAFLWELFGTFRYFPWPVWTILLVTALNWIGWFPFLLFDTDW 304
Query: 301 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 360
MGREIYGG+PNEGQNY GVR GA LMLNSV LGITSVLMEKLCRKWGAGFIWGISNIL
Sbjct: 305 MGREIYGGKPNEGQNYNIGVRTGAFALMLNSVFLGITSVLMEKLCRKWGAGFIWGISNIL 364
Query: 361 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 420
MALCFLAMLI YVA H+ Y GHDLPPNGIVI A++IF +LG PLAITYSVPYAL+S R
Sbjct: 365 MALCFLAMLITSYVANHIGYLGHDLPPNGIVITAVVIFAVLGVPLAITYSVPYALISSRI 424
Query: 421 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480
E LGLGQGLS+GVLNLAIV PQ++VS+GSGPWDQLFGGGNSPAFAVG ++A AGG++AIL
Sbjct: 425 EPLGLGQGLSMGVLNLAIVTPQVIVSLGSGPWDQLFGGGNSPAFAVGALAAFAGGVVAIL 484
Query: 481 AIPRSSAQKPRALP 494
IPRS A KPRA P
Sbjct: 485 GIPRSGAPKPRAPP 498
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|282154858|dbj|BAI60050.1| sucrose transporter [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/505 (72%), Positives = 423/505 (83%), Gaps = 15/505 (2%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
MP+ ER R++ A R PA+A+VPLR LL+VASVAGGIQFGWALQLSLLTPYVQE
Sbjct: 1 MPEIERLRTRHNRP---AAIREPAKARVPLRLLLRVASVAGGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAWASIIWLCGP+SGL VQPLVGH SD+CTSRFGRRRPFIV GA+SI +AVL+IG
Sbjct: 58 LGIPHAWASIIWLCGPLSGLLVQPLVGHMSDKCTSRFGRRRPFIVAGAVSIMIAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG-----------KDHRRTRVANA 169
SADIGW LGDRG+ + RAIA F+ GFW+LDVANNMTQG KDHRRTRVANA
Sbjct: 118 SADIGWFLGDRGEIKVRAIAAFIVGFWLLDVANNMTQGPCRALLADLTMKDHRRTRVANA 177
Query: 170 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 229
YFSLFMA+GNILG+ATGS+S W+KI PFTL SAC ++CANLK+AF LD+IFIA TT IS
Sbjct: 178 YFSLFMAIGNILGFATGSYSSWYKIFPFTLNSACTINCANLKAAFILDIIFIATTTYISI 237
Query: 230 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 289
SAA+E PL + S+ EE E S EAFLWELFGTF+YF G +W+IL+VTALTW+G
Sbjct: 238 SAANEQPLDPNHCSSHTGEEISETSHGQEEAFLWELFGTFKYFPGIVWVILLVTALTWIG 297
Query: 290 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 349
WFPFLLFDTDW GREIYGGEPN+G+NY+ GVRMG+LGLMLNSV+LG+TS+LMEKLCRKWG
Sbjct: 298 WFPFLLFDTDWFGREIYGGEPNDGKNYSAGVRMGSLGLMLNSVLLGVTSLLMEKLCRKWG 357
Query: 350 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 409
AGF WG+SN++M+LCF+AMLI+ V ++D G LPP+GIVIAALI+F +LG PLAITY
Sbjct: 358 AGFTWGVSNVVMSLCFIAMLIITAVRSNIDI-GQGLPPDGIVIAALIVFALLGIPLAITY 416
Query: 410 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 469
SVPYALVS R E+LGLGQGLS+GVLNLAIV PQIVVS+GSGPWD+LFGGGNSPAF V +
Sbjct: 417 SVPYALVSSRIEALGLGQGLSMGVLNLAIVFPQIVVSLGSGPWDELFGGGNSPAFVVAAL 476
Query: 470 SALAGGLIAILAIPRSSAQKPRALP 494
SA AGGL+AILAIPR+ +KP+ LP
Sbjct: 477 SAFAGGLVAILAIPRTRVEKPKILP 501
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38327323|gb|AAR17700.1| sucrose transporter [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/505 (74%), Positives = 428/505 (84%), Gaps = 19/505 (3%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
MP + R R ARP R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 1 MPAPDTDRH-------RVGARPAVRTRVPLRQLLRVASVACGIQFGWALQLSLLTPYVQE 53
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAWAS+IWLCGP+SGL VQPLVGH SDRCTSR+GRRRPFIV GA IAV+VL+IG
Sbjct: 54 LGIPHAWASVIWLCGPLSGLVVQPLVGHMSDRCTSRYGRRRPFIVVGAACIAVSVLIIGF 113
Query: 121 SADIGWLLGDRGD-FRPRAIAVFVFGFWILDVANNMTQG-----------KDHRRTRVAN 168
SADIGWLLGDRG RPRAIAVFVFGFWILDVANN+TQG KD+RRTRVAN
Sbjct: 114 SADIGWLLGDRGGGVRPRAIAVFVFGFWILDVANNVTQGPCRALLADLTEKDYRRTRVAN 173
Query: 169 AYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 228
AYFSLFMAVGN+LGYATGS S FK+ PF++T ACNV+CANLKSAFF+D FIAITT IS
Sbjct: 174 AYFSLFMAVGNVLGYATGSISYLFKVFPFSITPACNVNCANLKSAFFVDTAFIAITTWIS 233
Query: 229 ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWL 288
SAA PLGS +++ PF++EG QSS + EAFLWELFGTFRYF G++W+IL+V AL W+
Sbjct: 234 ISAAQVTPLGSSNRTTPFADEGPGQSSHIEEAFLWELFGTFRYFPGSVWLILLVIALNWI 293
Query: 289 GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 348
GWFPFLLFDTDWMGREIYGG+PNEG NY+TGVRMGALGLMLNSV+LGITSVLMEKLCRKW
Sbjct: 294 GWFPFLLFDTDWMGREIYGGKPNEGINYSTGVRMGALGLMLNSVILGITSVLMEKLCRKW 353
Query: 349 GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 408
GAGF+WGIS+ILM LCF AML++ +V + RGHDLPP+GIVIAAL++F +LG PLAIT
Sbjct: 354 GAGFVWGISSILMTLCFFAMLVITFVNKSIGVRGHDLPPDGIVIAALVVFAVLGIPLAIT 413
Query: 409 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGG 468
YSVPYALVS R ESLGLGQGLS+GVLNLAIVIPQ++VS+GSGPWDQLFGGGN PAFAV
Sbjct: 414 YSVPYALVSSRIESLGLGQGLSMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNVPAFAVAA 473
Query: 469 ISALAGGLIAILAIPRSSAQKPRAL 493
+++LA GL+AILAIPRS+A KPRA+
Sbjct: 474 VASLASGLVAILAIPRSAAPKPRAV 498
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458976|ref|XP_002285568.1| PREDICTED: sucrose transport protein SUC4 [Vitis vinifera] gi|147802485|emb|CAN77414.1| hypothetical protein VITISV_000474 [Vitis vinifera] gi|302142125|emb|CBI19328.3| unnamed protein product [Vitis vinifera] gi|310877780|gb|ADP37121.1| sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/502 (75%), Positives = 421/502 (83%), Gaps = 17/502 (3%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG-----------KDHRRTRVANA 169
SADIG LLGD D RPRA+A FV GFW+LDVANN+TQG KDHRRTRVANA
Sbjct: 118 SADIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 170 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 229
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 230 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 289
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 290 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 349
WFPFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 WFPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 350 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 409
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 410 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 469
SVPYAL+S R ESLGLGQGLS+GVLNLAIVIPQ++VS+GSGPWDQLFGGGNSP+ AV +
Sbjct: 417 SVPYALISTRIESLGLGQGLSMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNSPSLAVAAV 476
Query: 470 SALAGGLIAILAIPRSSAQKPR 491
+A A GL+AILAIPRSSA K R
Sbjct: 477 AAFASGLVAILAIPRSSADKSR 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5882292|gb|AAD55269.1|AF182445_1 sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/502 (75%), Positives = 420/502 (83%), Gaps = 17/502 (3%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG-----------KDHRRTRVANA 169
S DIG LLGD D RPRA+A FV GFW+LDVANN+TQG KDHRRTRVANA
Sbjct: 118 STDIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 170 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 229
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 230 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 289
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 290 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 349
WFPFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 WFPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 350 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 409
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 410 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 469
SVPYAL+S R ESLGLGQGLS+GVLNLAIVIPQ++VS+GSGPWDQLFGGGNSP+ AV +
Sbjct: 417 SVPYALISTRIESLGLGQGLSMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNSPSLAVAAV 476
Query: 470 SALAGGLIAILAIPRSSAQKPR 491
+A A GL+AILAIPRSSA K R
Sbjct: 477 AAFASGLVAILAIPRSSADKSR 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118132673|gb|ABK60189.1| sucrose transporter 5 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/468 (77%), Positives = 401/468 (85%), Gaps = 11/468 (2%)
Query: 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF 97
S+AGGIQFGWALQLSLLTPYVQELGIPHAWAS+IWLCGP+SGL VQPLVGH SDRCTSRF
Sbjct: 31 SIAGGIQFGWALQLSLLTPYVQELGIPHAWASVIWLCGPLSGLVVQPLVGHMSDRCTSRF 90
Query: 98 GRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQ 157
GRRRPFI GA I +VL+IG SADIGWLLGDRG+ RPRAI VFVFGFWILDVANNMTQ
Sbjct: 91 GRRRPFIFTGASLICFSVLIIGHSADIGWLLGDRGNTRPRAIGVFVFGFWILDVANNMTQ 150
Query: 158 G-----------KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 206
G KDHRRTRVANAYFSLFMAVGNILG+ATG+FS WFK+ PFT+TSACNVD
Sbjct: 151 GPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGFATGAFSKWFKVFPFTVTSACNVD 210
Query: 207 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF 266
CANLKSAF+LD++F+ IT +S +AA E PL D+S P +E+ QSS EAFLWELF
Sbjct: 211 CANLKSAFYLDIVFMVITAYLSITAAQESPLCLSDRSTPIAEDVSGQSSHAQEAFLWELF 270
Query: 267 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALG 326
GTFRYF +W IL+VTAL W+GWFPFLLFDTDWMGREIYGG+PNEGQNY GVR GA
Sbjct: 271 GTFRYFPWPVWTILLVTALNWIGWFPFLLFDTDWMGREIYGGKPNEGQNYNIGVRTGAFA 330
Query: 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLP 386
LMLNSV LG+TS+ ME+LCRKWGAGFIWGISNILMALCFLAMLI YVA H+ Y GHDLP
Sbjct: 331 LMLNSVFLGVTSLFMERLCRKWGAGFIWGISNILMALCFLAMLITSYVANHIGYLGHDLP 390
Query: 387 PNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVS 446
P+GIVIAA++IF +LG PLAITYSVPYAL+S R E LGLGQGLS+GVLNLAIVIPQ++VS
Sbjct: 391 PHGIVIAAIVIFAVLGVPLAITYSVPYALISSRIEPLGLGQGLSMGVLNLAIVIPQVIVS 450
Query: 447 MGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQKPRALP 494
+GSGPWDQLFGGGNSPAFA+GG++A AGGL+AIL IPRS AQKP ALP
Sbjct: 451 LGSGPWDQLFGGGNSPAFAIGGLAAFAGGLVAILGIPRSGAQKPMALP 498
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74476785|gb|ABA08443.1| sucrose transporter type 4 [Manihot esculenta] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/494 (75%), Positives = 424/494 (85%), Gaps = 13/494 (2%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
+A + RA ARPP +VPLR+LL+V S+AGGIQFGWALQLSLLTPYVQELGIPHAWAS+I
Sbjct: 5 QAESHRARARPPVVRRVPLRQLLRVTSIAGGIQFGWALQLSLLTPYVQELGIPHAWASVI 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGL VQPLVG SDRC SRFGRRRPFI+ GAI I VAVL+IG SADIGWLLGDR
Sbjct: 65 WLCGPLSGLVVQPLVGPMSDRCASRFGRRRPFILAGAILIVVAVLIIGHSADIGWLLGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQG-----------KDHRRTRVANAYFSLFMAVGNI 180
G+ RPRAI VFVFGFW+LDVANN TQG KDHRRTRVANAYFSLFMA+GNI
Sbjct: 125 GNTRPRAIVVFVFGFWVLDVANNTTQGPCRALLADLTGKDHRRTRVANAYFSLFMAIGNI 184
Query: 181 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 240
LG+ATG+FS WFK+ PFT+T+ACNVDCANLKSAF+LD++F+ IT+ +S +AA E PLG
Sbjct: 185 LGFATGAFSNWFKVFPFTVTTACNVDCANLKSAFYLDIVFMVITSYLSITAAQESPLGLS 244
Query: 241 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 300
++S P +E+ +SS EAFLWELFGTFRYF +W IL+VTAL W+GWFPFLLFDTDW
Sbjct: 245 NRSTPLAEDVSVESS--QEAFLWELFGTFRYFPWPVWTILLVTALNWIGWFPFLLFDTDW 302
Query: 301 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 360
MGREIYGG+PNEGQNY GVR G+ LMLNSV LGITSVLMEKLCRKWGAGFIWG+SNIL
Sbjct: 303 MGREIYGGKPNEGQNYNVGVRAGSFALMLNSVFLGITSVLMEKLCRKWGAGFIWGLSNIL 362
Query: 361 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 420
MALCFLAMLI YVA H+ Y GHDLPP+GIVI+A++IF +LG PLAITYSVPYAL+S R
Sbjct: 363 MALCFLAMLITSYVANHIGYLGHDLPPSGIVISAVVIFAVLGVPLAITYSVPYALISSRI 422
Query: 421 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480
E LGLGQGLS+GVLNLAIVIPQ++VS+GSGPWDQLFGGGNSPAFAVGG++ALAGGLIAIL
Sbjct: 423 EPLGLGQGLSMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNSPAFAVGGLAALAGGLIAIL 482
Query: 481 AIPRSSAQKPRALP 494
IPRS QKPRALP
Sbjct: 483 GIPRSGTQKPRALP 496
|
Source: Manihot esculenta Species: Manihot esculenta Genus: Manihot Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6434829|gb|AAF08329.1|AF021808_1 putative sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/502 (75%), Positives = 419/502 (83%), Gaps = 17/502 (3%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG-----------KDHRRTRVANA 169
SADIG LLGD D RPRA+A FV GFW+LDVANN+TQG KDHRRTRVANA
Sbjct: 118 SADIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 170 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 229
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 230 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 289
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 290 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 349
PFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 LLPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 350 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 409
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 410 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 469
SVPYAL+S R ESLGLGQGLS+GVLNLAIVIPQ++VS+GSGPWDQLFGGGNSP+ AV +
Sbjct: 417 SVPYALISTRIESLGLGQGLSMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNSPSLAVAAV 476
Query: 470 SALAGGLIAILAIPRSSAQKPR 491
+A A GL+AILAIPRSSA K R
Sbjct: 477 AAFASGLVAILAIPRSSADKSR 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350538461|ref|NP_001234344.1| sucrose transporter [Solanum lycopersicum] gi|9957218|gb|AAG09270.1|AF176950_1 sucrose transporter [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/502 (71%), Positives = 418/502 (83%), Gaps = 16/502 (3%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
MP+ ER R++ +R R P + +VPLR LL+VASVAGGIQFGWALQLSLLTPYVQE
Sbjct: 1 MPEIERHRTRH----NRPAIREPVKPRVPLRLLLRVASVAGGIQFGWALQLSLLTPYVQE 56
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAWASIIWLCGP+SGL VQPLVGH SD+CTSRFGRRRPFIV GA SI +AVL+IG
Sbjct: 57 LGIPHAWASIIWLCGPLSGLLVQPLVGHMSDKCTSRFGRRRPFIVAGAASIMIAVLIIGF 116
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG-----------KDHRRTRVANA 169
SADIGWLLGDRG+ + RAIA FV GFW+LDVANNMTQG KDHRRTRVANA
Sbjct: 117 SADIGWLLGDRGEIKVRAIAAFVVGFWLLDVANNMTQGPCRALLADLTQKDHRRTRVANA 176
Query: 170 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 229
YFSLFMA+GNILG+ATGS+SGW+KI FTL +AC ++CANLK+AF LD+IFIA TTCIS
Sbjct: 177 YFSLFMAIGNILGFATGSYSGWYKIFLFTLNTACTINCANLKAAFILDIIFIATTTCISI 236
Query: 230 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 289
SAA+E PL S+ EE E S EAFLWELFG F+YF G +W+IL+VTALTW+G
Sbjct: 237 SAANEQPLDPSRGSSHTGEEIDESSHGQEEAFLWELFGIFKYFPGVVWVILLVTALTWIG 296
Query: 290 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 349
WFPFLLFDTDW GREIYGGEPN+G+NY+ GVRMG+LGLMLNSV+LG+TS+ MEKLCRKWG
Sbjct: 297 WFPFLLFDTDWFGREIYGGEPNDGKNYSAGVRMGSLGLMLNSVLLGLTSLFMEKLCRKWG 356
Query: 350 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 409
AGF WG+SN++M+LCF+AMLI+ V ++D G LPP+GIVIAAL++F+ILG PLAITY
Sbjct: 357 AGFTWGVSNVVMSLCFIAMLIITAVRSNIDI-GQGLPPDGIVIAALVVFSILGIPLAITY 415
Query: 410 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 469
SVPYALVS R E+LGLGQGLS+GVLNLAIV PQIVVS+GSGPWD+LFGGGNSPAF V +
Sbjct: 416 SVPYALVSSRIEALGLGQGLSMGVLNLAIVFPQIVVSLGSGPWDELFGGGNSPAFVVAAL 475
Query: 470 SALAGGLIAILAIPRSSAQKPR 491
SA A GLIAILAIPR+ ++P+
Sbjct: 476 SAFAAGLIAILAIPRTRVERPK 497
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 494 | ||||||
| TAIR|locus:2024422 | 510 | SUT4 "AT1G09960" [Arabidopsis | 0.927 | 0.898 | 0.670 | 2.7e-171 | |
| TAIR|locus:2064253 | 492 | SUC8 "AT2G14670" [Arabidopsis | 0.862 | 0.865 | 0.511 | 3.4e-116 | |
| TAIR|locus:2028947 | 491 | SUC7 "AT1G66570" [Arabidopsis | 0.862 | 0.867 | 0.507 | 3.9e-115 | |
| TAIR|locus:2158352 | 492 | SUC6 "AT5G43610" [Arabidopsis | 0.862 | 0.865 | 0.505 | 1e-114 | |
| TAIR|locus:2199633 | 512 | SUC2 "AT1G22710" [Arabidopsis | 0.866 | 0.835 | 0.502 | 1.5e-113 | |
| TAIR|locus:2160732 | 491 | SUC9 "AT5G06170" [Arabidopsis | 0.862 | 0.867 | 0.497 | 4.1e-113 | |
| TAIR|locus:2016069 | 513 | SUC1 "AT1G71880" [Arabidopsis | 0.925 | 0.890 | 0.484 | 5.2e-113 | |
| TAIR|locus:2016074 | 512 | SUC5 "AT1G71890" [Arabidopsis | 0.868 | 0.837 | 0.474 | 3.1e-106 | |
| TAIR|locus:2056675 | 594 | SUT2 "AT2G02860" [Arabidopsis | 0.421 | 0.350 | 0.486 | 2.2e-101 | |
| UNIPROTKB|Q69JW3 | 535 | SUT5 "Sucrose transport protei | 0.860 | 0.794 | 0.407 | 2.4e-85 |
| TAIR|locus:2024422 SUT4 "AT1G09960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1665 (591.2 bits), Expect = 2.7e-171, P = 2.7e-171
Identities = 319/476 (67%), Positives = 363/476 (76%)
Query: 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFS 90
R LL+VASVA GIQFGWALQLSLLTPYVQELGIPHAWAS+IWLCGP+SGLFVQPLVGH S
Sbjct: 41 RVLLRVASVACGIQFGWALQLSLLTPYVQELGIPHAWASVIWLCGPLSGLFVQPLVGHSS 100
Query: 91 DRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR-GDFRPRAIAVFVFGFWIL 149
DRCTS++GRRRPFIV GA++I+++V++IG +ADIGW GDR G +PRAI FV GFWIL
Sbjct: 101 DRCTSKYGRRRPFIVAGAVAISISVMVIGHAADIGWAFGDREGKIKPRAIVAFVLGFWIL 160
Query: 150 DVANNMTQG-----------KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 198
DVANNMTQG D+RRTRVAN YFSLFMAVGN+LGYATGS++GW+KI FT
Sbjct: 161 DVANNMTQGPCRALLADLTENDNRRTRVANGYFSLFMAVGNVLGYATGSYNGWYKIFTFT 220
Query: 199 LTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSSDVH 258
T ACNV+CANLKSAF++DV HEVPL S + E H Q+S
Sbjct: 221 KTVACNVECANLKSAFYIDVVFIAITTILSVSAAHEVPLAS------LASEAHGQTSGTD 274
Query: 259 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYAT 318
EAFL E+FGTFRYF G +WIIL+VTALTW+GWFPF+LFDTDWMGREIYGGEPN G +Y+
Sbjct: 275 EAFLSEIFGTFRYFPGNVWIILLVTALTWIGWFPFILFDTDWMGREIYGGEPNIGTSYSA 334
Query: 319 GVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHM 378
GV MGALGLMLNSV LGITSVLMEKLCRKWGAGF+WGISNILMA+CFL M+I +VA H+
Sbjct: 335 GVSMGALGLMLNSVFLGITSVLMEKLCRKWGAGFVWGISNILMAICFLGMIITSFVASHL 394
Query: 379 DYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXXXXXXXXXXXAI 438
Y GH+ PP IV AA++IFTILG PLAITYSVPYAL+SIR ES AI
Sbjct: 395 GYIGHEQPPASIVFAAVLIFTILGIPLAITYSVPYALISIRIESLGLGQGLSLGVLNLAI 454
Query: 439 VIPQIVVSMGSGPWDQLFGGGNSPAFAVXXXXXXXXXXXXXXXXPRSSAQKPRALP 494
VIPQ++VS+GSGPWDQLFGGGNSPA AV PR+ QKP LP
Sbjct: 455 VIPQVIVSVGSGPWDQLFGGGNSPALAVGAATGFIGGIVAILALPRTRIQKPIPLP 510
|
|
| TAIR|locus:2064253 SUC8 "AT2G14670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
Identities = 235/459 (51%), Positives = 303/459 (66%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGPVSGL VQP VG+
Sbjct: 29 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRCTSRFGRRRPFI GA+ +AVAV+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 89 FSDRCTSRFGRRRPFIATGALLVAVAVVLIGYAADFGHSMGDKIDKPVKMRAVVIFALGF 148
Query: 147 WILDVANNMTQGK-----------DHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 195
WILDVANN QG D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 208
Query: 196 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 255
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 209 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 262
Query: 256 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 315
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 316
Query: 316 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGFIWGISNILMALCF-LAM 368
Y G+ +GALGLMLNS+VLGI S+ +E + +K GA +WG NI++A+C + +
Sbjct: 317 KMKKLYNQGIHVGALGLMLNSIVLGIVSLGIEGISKKIGGAKRLWGAVNIILAVCLAMTV 376
Query: 369 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 427
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S
Sbjct: 377 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 436
Query: 428 XXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 466
AIVIPQ++VS G GP D LFGGGN P F V
Sbjct: 437 GLSLGVLNMAIVIPQMIVSFGVGPIDALFGGGNLPRFVV 475
|
|
| TAIR|locus:2028947 SUC7 "AT1G66570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1135 (404.6 bits), Expect = 3.9e-115, P = 3.9e-115
Identities = 233/459 (50%), Positives = 301/459 (65%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W S IWLCGPVSGL VQP VG+
Sbjct: 28 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWPSFIWLCGPVSGLLVQPSVGY 87
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRCTSRFGRRRPFI GA+ +AV+V+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 88 FSDRCTSRFGRRRPFIATGALLVAVSVVLIGYAADFGHSMGDKIDKPVKMRAVVIFALGF 147
Query: 147 WILDVANNMTQGK-----------DHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 195
WILDVANN QG D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 148 WILDVANNTLQGPCRAFLGDLAAGDAQKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 207
Query: 196 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 255
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 208 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 261
Query: 256 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 315
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 262 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 315
Query: 316 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 368
Y G+ +GALGLMLNS+VLG+ S+ +E + RK G A +WG NI++A+C + +
Sbjct: 316 KMKKLYNQGIHVGALGLMLNSIVLGVMSLGIEGISRKMGGAKRLWGAVNIILAVCLAMTV 375
Query: 369 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 427
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S
Sbjct: 376 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 435
Query: 428 XXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 466
AIVIPQ++VS G GP D LFG GN P F V
Sbjct: 436 RLSLGVLNMAIVIPQMIVSFGVGPIDALFGDGNLPGFVV 474
|
|
| TAIR|locus:2158352 SUC6 "AT5G43610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 232/459 (50%), Positives = 299/459 (65%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
P+RK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGPVSGL VQP VG+
Sbjct: 29 PMRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRC SRFGRRRPFI GA+ +AVAV+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 89 FSDRCKSRFGRRRPFIAMGALLVAVAVVLIGYAADFGHSMGDKVDEPVKMRAVVIFALGF 148
Query: 147 WILDVANNMTQGK-----------DHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 195
WILDVANN QG D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 208
Query: 196 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 255
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 209 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 262
Query: 256 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 315
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 316
Query: 316 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 368
Y G+ +G LGLMLNS+VLG S+ +E + RK G A +WG NI++A+C + +
Sbjct: 317 KMKKLYNQGIHVGGLGLMLNSIVLGFMSLGIEGISRKMGGAKRLWGAVNIILAVCLAMTV 376
Query: 369 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 427
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S
Sbjct: 377 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 436
Query: 428 XXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 466
IVIPQ+VVS G GP D LFGGGN P F V
Sbjct: 437 GLSLGVLNMTIVIPQMVVSFGVGPIDALFGGGNLPGFVV 475
|
|
| TAIR|locus:2199633 SUC2 "AT1G22710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
Identities = 231/460 (50%), Positives = 304/460 (66%)
Query: 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHF 89
LRK++ V+S+A G+QFGWALQLSLLTPYVQ LGIPH WAS+IWLCGP+SG+ VQP+VG+
Sbjct: 29 LRKIISVSSIAAGVQFGWALQLSLLTPYVQLLGIPHKWASLIWLCGPISGMLVQPIVGYH 88
Query: 90 SDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRP--RAIAVFVFGFW 147
SDRCTSRFGRRRPFIV GA + VAV LIG +ADIG +GD+ D P RAIA+F GFW
Sbjct: 89 SDRCTSRFGRRRPFIVAGAGLVTVAVFLIGYAADIGHSMGDQLDKPPKTRAIAIFALGFW 148
Query: 148 ILDVANNMTQGK-----------DHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 196
ILDVANN QG + ++TR ANA+FS FMAVGN+LGYA GS+ +K++P
Sbjct: 149 ILDVANNTLQGPCRAFLADLSAGNAKKTRTANAFFSFFMAVGNVLGYAAGSYRNLYKVVP 208
Query: 197 FTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSSD 256
FT+T +C++ CANLK+ FFL + E P + + +A +G ++S+
Sbjct: 209 FTMTESCDLYCANLKTCFFLSITLLLIVTFVSLCYVKEKPW-TPEPTA----DG--KASN 261
Query: 257 VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN- 315
V F E+FG F+ +W++LIVTAL W+ WFPFLLFDTDWMGRE+YGG +
Sbjct: 262 V--PFFGEIFGAFKELKRPMWMLLIVTALNWIAWFPFLLFDTDWMGREVYGGNSDATATA 319
Query: 316 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 368
Y GVR GALGLMLN++VLG S+ +E + RK G A +WGI N ++A+C + +
Sbjct: 320 ASKKLYNDGVRAGALGLMLNAIVLGFMSLGVEWIGRKLGGAKRLWGIVNFILAICLAMTV 379
Query: 369 LILYYVAIHM-DYRGHDL-PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXX 426
++ H D+ G PP + AL +F ILG P AIT+S+P+AL SI + +
Sbjct: 380 VVTKQAENHRRDHGGAKTGPPGNVTAGALTLFAILGIPQAITFSIPFALASIFSTNSGAG 439
Query: 427 XXXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 466
AIV+PQ+V+S+G GP+D+LFGGGN PAF +
Sbjct: 440 QGLSLGVLNLAIVVPQMVISVGGGPFDELFGGGNIPAFVL 479
|
|
| TAIR|locus:2160732 SUC9 "AT5G06170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
Identities = 228/458 (49%), Positives = 297/458 (64%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGP+SGL VQP VG+
Sbjct: 29 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPISGLLVQPTVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRC SRFGRRRPFI GA+ +A+AV+LIG +AD G +GD+ D + RA+ FV GF
Sbjct: 89 FSDRCKSRFGRRRPFIATGALLVALAVILIGFAADFGHTMGDKLDEAVKIRAVGFFVVGF 148
Query: 147 WILDVANNMTQGK-----------DHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 195
WILDVANN QG D ++TR ANA FS FMAVGN+LGYA GS++ KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAIFSFFMAVGNVLGYAAGSYTNLHKIF 208
Query: 196 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 255
PFT+T AC++ CANLKS F + + + Q +P ++ +E++
Sbjct: 209 PFTVTKACDIYCANLKSCFIISITLLIVLTIIALWYVED------KQWSPNADSDNEKTP 262
Query: 256 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 315
F E+FG F+ +W++L VTAL W+ WFPFLL+DTDWMGRE+YGG+ + G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLAVTALNWIAWFPFLLYDTDWMGREVYGGD-SAGDD 316
Query: 316 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCF-LAML 369
Y G+++G+LGLMLNS+VLG+ S+++ + +K GA +WG NI++A+C + +L
Sbjct: 317 KMKKLYNHGIQVGSLGLMLNSIVLGVMSLVIGVISKKIGAKRLWGAVNIILAVCLAMTVL 376
Query: 370 ILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXXX 428
+ H G LP N I AL +F ILG PLAIT+S+P+AL SI + S
Sbjct: 377 VTKKAEEHRKIAGRMALPTNAIRDGALSLFAILGIPLAITFSIPFALASIISSSSGAGQG 436
Query: 429 XXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 466
AIVIPQ++VS G GP D LFGGGN P F V
Sbjct: 437 LSLGVLNMAIVIPQMIVSFGVGPIDALFGGGNLPGFVV 474
|
|
| TAIR|locus:2016069 SUC1 "AT1G71880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
Identities = 235/485 (48%), Positives = 301/485 (62%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A G+QFGWALQLSLLTPYVQ LGIPH W+S+IWLCGPVSG+ VQP+VG
Sbjct: 29 PLRKIISVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPVSGMIVQPIVGF 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
SDRC S+FGRRRPFI GA +AVAV LIG +AD G+ +GD+ + + RAI +F GF
Sbjct: 89 HSDRCRSKFGRRRPFIATGAALVAVAVFLIGYAADFGYKMGDKLEEKVKVRAIGIFALGF 148
Query: 147 WILDVANNMTQGK-----------DHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 195
WILDVANN QG D +RTRVANA+FS FMAVGN+LGYA GS++ K+
Sbjct: 149 WILDVANNTLQGPCRAFLADLAAGDAKRTRVANAFFSFFMAVGNVLGYAAGSYTNLHKMF 208
Query: 196 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 255
PFT+T AC++ CANLK+ FFL + ++ P + + E++S
Sbjct: 209 PFTMTKACDIYCANLKTCFFLSITLLLIVTVTSLWYVND----KQWSPPPRNADDDEKTS 264
Query: 256 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEP--NEG 313
V E+FG F+ +W++LIVTAL W+ WFPFLLFDTDWMGRE++GG+ NE
Sbjct: 265 SV--PLFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLFDTDWMGREVFGGDSDGNER 322
Query: 314 QN--YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCFLAMLI 370
Y+ GV+ GA+GLM NS+VLG S+ +E + RK G A +WGI N ++A LAM +
Sbjct: 323 SKKLYSLGVQSGAMGLMFNSIVLGFMSLGVEWIGRKLGGAKRLWGIVNFILA-AGLAMTV 381
Query: 371 LY--YVAIHMDYRGHDLPPNGIVIA-ALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 427
L + H G P+ V A AL +F +LG PLAIT+S P+AL SI +
Sbjct: 382 LVTKFAEDHRKTAGDLAGPSASVKAGALSLFAVLGIPLAITFSTPFALASIFSSCSGAGQ 441
Query: 428 XXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVXXXXXXXXXXXXXXXXPRSSA 487
AIVIPQ++VS+G GP+D LFGGGN PAF V P
Sbjct: 442 GLSLGVLNLAIVIPQMIVSLGGGPFDALFGGGNLPAFIVAAIAAAISGVLALTVLPSPPP 501
Query: 488 QKPRA 492
P+A
Sbjct: 502 DAPKA 506
|
|
| TAIR|locus:2016074 SUC5 "AT1G71890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 218/459 (47%), Positives = 288/459 (62%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A G+QFGWALQLSLLTPY+Q LGIPH W+S +WLCGP+SG+ VQP+VG+
Sbjct: 30 PLRKIISVASIAAGVQFGWALQLSLLTPYIQLLGIPHKWSSYMWLCGPISGMIVQPIVGY 89
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR--GDFRPRAIAVFVFGF 146
SDRC SRFGRRRPFI G +AV+V LIG +AD+G GD+ R RAI +F+ GF
Sbjct: 90 HSDRCESRFGRRRPFIAAGVALVAVSVFLIGFAADMGHSFGDKLENKVRTRAIIIFLTGF 149
Query: 147 WILDVANNMTQGK-----------DHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 195
W LDVANN QG D ++TRVANA FS FMAVGN+LGYA GS++ K+
Sbjct: 150 WFLDVANNTLQGPCRAFLADLAAGDAKKTRVANACFSFFMAVGNVLGYAAGSYTNLHKMF 209
Query: 196 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 255
PFT+T AC++ CANLK+ FFL + + Q +P + E++S
Sbjct: 210 PFTMTKACDIYCANLKTCFFLSITLLLIVTFSSLWYVKD------KQWSPPQGDKEEKTS 263
Query: 256 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 315
+ F E+FG R+ + ++LIVT + W+ WFPF+L+DTDWMGRE+YGG + +
Sbjct: 264 SLF--FFGEIFGAVRHMKRPMVMLLIVTVINWIAWFPFILYDTDWMGREVYGGNSDGDER 321
Query: 316 ----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCFLAMLI 370
Y GV+ GALGLM NS++LG S+ +E + RK G A +WG N ++A+ LAM +
Sbjct: 322 SKKLYDQGVQAGALGLMFNSILLGFVSLGVESIGRKMGGAKRLWGCVNFILAIG-LAMTV 380
Query: 371 LYYVAI--HMDYRGHDL-PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 427
L + H + G P +GI +FT+LG PLAITYS+P+AL SI + +
Sbjct: 381 LVTKSAEHHREIAGPLAGPSSGIKAGVFSLFTVLGIPLAITYSIPFALASIFSTNSGAGQ 440
Query: 428 XXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 466
AI IPQ++VS SGP D FGGGN P+F V
Sbjct: 441 GLSLGVLNIAICIPQMIVSFSSGPLDAQFGGGNLPSFVV 479
|
|
| TAIR|locus:2056675 SUT2 "AT2G02860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 2.2e-101, Sum P(2) = 2.2e-101
Identities = 109/224 (48%), Positives = 143/224 (63%)
Query: 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR 92
L+ +VA G+QFGWALQLSLLTPY+Q LGI HA++S IWLCGP++GL VQP VG +SD+
Sbjct: 63 LVLSCTVAAGVQFGWALQLSLLTPYIQTLGISHAFSSFIWLCGPITGLVVQPFVGIWSDK 122
Query: 93 CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDF-------RPRAIAVFVFG 145
CTS++GRRRPFI+ G+ I++AV++IG SADIG+LLGD + R RA VF+ G
Sbjct: 123 CTSKYGRRRPFILVGSFMISIAVIIIGFSADIGYLLGDSKEHCSTFKGTRTRAAVVFIIG 182
Query: 146 FWILDVANNMTQGKDHR---------RTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 196
FW+LD+ANN QG + ANA F L+MA+GNILG++ G+ W + P
Sbjct: 183 FWLLDLANNTVQGPARALLADLSGPDQRNTANAVFCLWMAIGNILGFSAGASGKWQEWFP 242
Query: 197 FTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSH 240
F + AC C NLK+AF L V E+P S+
Sbjct: 243 FLTSRACCAACGNLKAAFLLAVVFLTICTLVTIYFAKEIPFTSN 286
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| UNIPROTKB|Q69JW3 SUT5 "Sucrose transport protein SUT5" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 188/461 (40%), Positives = 262/461 (56%)
Query: 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSD 91
+L VAGGIQ+GWALQLSLL+PY Q LGI H++ S+ W+CGP++G VQP+VG++SD
Sbjct: 53 RLFFACMVAGGIQYGWALQLSLLSPYSQTLGISHSYVSLTWICGPIAGFVVQPIVGYYSD 112
Query: 92 RCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDF-----RPR--AIAVFVF 144
RCT + GRRRPFI+ G + I ++V++IG SADIG LGD + PR A V++
Sbjct: 113 RCTMKMGRRRPFILVGCLIICISVMIIGFSADIGRHLGDTKEHCSTYTGPRWSAAMVYIV 172
Query: 145 GFWILDVANNMTQGK------D----HRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 194
GFW LD ANN QG D H V + FSL+MA+G++LGY +G+ W +
Sbjct: 173 GFWFLDFANNTVQGPARAMMADLSAGHHGPNVGQSIFSLWMAIGSVLGYLSGANGKWHEW 232
Query: 195 LPFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQS 254
P+ T+AC CANLK AFF V E+PL D + S
Sbjct: 233 FPWLKTAACCDACANLKGAFFTAVLLIVVSMTVTMYLADEMPLDKQDV---------DTS 283
Query: 255 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPN--- 311
A +LF + R ++ +L VTA+TWL WFPF+ ++TDWMGREIY GEP
Sbjct: 284 GGGGCAVFVDLFKSLRNLPPAMFKVLAVTAVTWLSWFPFIQYNTDWMGREIYHGEPQGTA 343
Query: 312 -EGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLI 370
+ Y GVR GA+GL+ SV LG+TS ++ KLCR+ + +W ISN L+ M+
Sbjct: 344 AKADVYDAGVREGAMGLLFCSVALGVTSFVIPKLCRRLTSKVVWSISNFLVFALMAVMVA 403
Query: 371 LYYVAIHMDYR-----GHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXX 425
+ V++ YR G P + AL++F ++G P A+ +SVP+A+ S T
Sbjct: 404 VGMVSMR-GYRPSLAAGLTGPDPTLKAVALVVFALIGIPQAVLFSVPWAVASEVTAEEGG 462
Query: 426 XXXXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 466
AIV+PQ+V+++ +GP D F GN+PAF +
Sbjct: 463 GQGLAIGVLNIAIVVPQLVIALTAGPIDGAFNKGNTPAFGI 503
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FE59 | SUC4_ARATH | No assigned EC number | 0.7089 | 0.9817 | 0.9509 | yes | no |
| Q03411 | SUT_SPIOL | No assigned EC number | 0.5300 | 0.9331 | 0.8780 | N/A | no |
| A2ZN77 | SUT2_ORYSI | No assigned EC number | 0.6378 | 0.9230 | 0.9101 | N/A | no |
| Q0ILJ3 | SUT2_ORYSJ | No assigned EC number | 0.6371 | 0.9251 | 0.9121 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | VvSUC11 | SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotgun sequence); (501 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | HT5 | SubName- Full=Hexose transporter (Chromosome chr5 scaffold_2, whole genome shotgun sequence); (536 aa) | • | 0.483 | |||||||
 | GSVIVG00004559001 | SubName- Full=Chromosome undetermined scaffold_736, whole genome shotgun sequence; (519 aa) | • | 0.483 | |||||||
 | HT6 | SubName- Full=Putative hexose transporter (Chromosome chr18 scaffold_137, whole genome shotgun [...] (740 aa) | • | 0.483 | |||||||
 | HT4 | SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (508 aa) | • | 0.480 | |||||||
 | HT3 | SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (526 aa) | • | 0.480 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 494 | |||
| TIGR01301 | 477 | TIGR01301, GPH_sucrose, GPH family sucrose/H+ symp | 0.0 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 4e-09 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 1e-05 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 1e-04 |
| >gnl|CDD|233349 TIGR01301, GPH_sucrose, GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Score = 688 bits (1776), Expect = 0.0
Identities = 304/475 (64%), Positives = 355/475 (74%), Gaps = 20/475 (4%)
Query: 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVG 87
VPLRKLL+VASVA G+QFGWALQLSLLTPYVQELGIPHAWASIIWLCGP+SGL VQPLVG
Sbjct: 1 VPLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVG 60
Query: 88 HFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD--RGDFRPRAIAVFVFG 145
+ SDRCTSRFGRRRPFI GA +A AV+LIG +ADIG L GD +PRAI VFV G
Sbjct: 61 YLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVG 120
Query: 146 FWILDVANNMTQG-----------KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 194
FWILDVANNM QG D RRTR+ANAYFS FMA+GN+LGYA G++SG +KI
Sbjct: 121 FWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI 180
Query: 195 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 254
PFT T AC V CANLKS F +D+I +AI T I+ SA E PL D + E S
Sbjct: 181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI--NSEAAPPS 238
Query: 255 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQ 314
EAF ELFG F+Y +WI+L+VT L W+ WFPF+LFDTDWMGRE+YGG N+G
Sbjct: 239 KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA 298
Query: 315 NYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG-FIWGISNILMALCFLAMLILYY 373
Y GVR GA GLMLNSVVLGITS+ MEKLCR WGAG +WGI NI++A+C A +++ Y
Sbjct: 299 KYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTY 358
Query: 374 VAIHMDYRGHDL----PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGL 429
VA + Y D PP GI +ALI+F ILG PLAITYS+P+AL SIR+ +LG GQGL
Sbjct: 359 VAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL 418
Query: 430 SLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484
S+GVLNLAIVIPQI+VS+GSGPWDQLFGGGN PAF VG ++A GL+A++ +PR
Sbjct: 419 SMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473
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This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. Length = 477 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 78/453 (17%), Positives = 145/453 (32%), Gaps = 65/453 (14%)
Query: 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCG--------PVSGLFVQPLVG 87
VA++ GG FG+ + + + + I C VS V L+G
Sbjct: 4 VAAL-GGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 88 HFSDR-CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGF 146
RFGR++ ++ + + + LL G + + + R I G
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFV-IGALLQGFAKGKSFYM----LIVGRVIVGLGVGG 117
Query: 147 WILDVANNMTQG--KDHRRTRVANAYFSLFMAVGNILGYATGSFSG---------WFKIL 195
+ V +++ K R + + L + G ++ G L
Sbjct: 118 ISVLVPMYISEIAPKKLRGALGS--LYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGL 175
Query: 196 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE--GHEQ 253
F + L + V+ + A A G D EE E+
Sbjct: 176 QFVPAILLLIGLLFLPESPRWLVLKGKLE---EARAVLAKLRGVSDVDQEIQEEKDSLER 232
Query: 254 SSDVHEAFLWELFGTFRYF-----SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGG 308
S + +A ELF + I +T + + ++ +F+T + +
Sbjct: 233 SVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVT 292
Query: 309 EPNEGQNYAT-----------GVR----MGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353
N+ G R +GA G+ + +VLG+ + + K GAG +
Sbjct: 293 IIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK---SKGAGIV 349
Query: 354 WGISNILMALCFLAML-ILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 412
+ +L F + +V + +L P G+ A+ I T + +
Sbjct: 350 AIVFILLFIAFFALGWGPVPWVIV------SELFPLGVRPKAMAIATAANW--LANFLIG 401
Query: 413 YALVSIRTESLGLGQGLSLGVLNLAIVIPQIVV 445
+ I G + G+L L I+ V
Sbjct: 402 FLFPIITGAIGGYVFLVFAGLLVLFILFVFFFV 434
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Length = 449 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 22 PPARAKVPLRKLLKVAS--VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSG 79
+ K+ L++ + A FG + L LL Y G+ A A I+L +
Sbjct: 3 NSSSKKLSLKEKIGYGLGDFASNFAFG-IVVLYLLFFYTDVFGLSAALAGTIFLVARIID 61
Query: 80 LFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117
P++G DR SR+GR RP+++ GAI A+ +L
Sbjct: 62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVL 99
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Length = 467 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 57 YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116
Y LG+ A I+L + F P+VG DR +R+G+ RP+++ GAI +A++++
Sbjct: 26 YTDVLGLSAAAVGTIFLVARIWDAFTDPIVGAIIDRTRTRWGKFRPWLLIGAIPLAISLV 85
Query: 117 LI 118
L+
Sbjct: 86 LL 87
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This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 100.0 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.98 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.98 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.97 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.97 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.97 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.97 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.96 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.96 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.96 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.96 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.96 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.95 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.95 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.95 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.95 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.95 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.95 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.95 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.95 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.95 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.95 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.95 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.95 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.95 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.95 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.94 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.94 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.94 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.94 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.94 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.94 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.94 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.94 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.93 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.93 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.93 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.93 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.93 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.93 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.92 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.91 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.91 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.91 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.9 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.9 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.89 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.89 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.89 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.89 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.87 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.87 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.87 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.86 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.86 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.85 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.85 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.85 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.84 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.84 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.81 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.81 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.81 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.8 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.79 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.79 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.78 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.77 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.76 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.76 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.73 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.73 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.71 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.69 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.62 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.53 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.5 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.47 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.44 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.43 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.43 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.42 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.39 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.39 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.37 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.37 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.36 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.36 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.35 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.34 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.34 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.33 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.33 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.33 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.32 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.32 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.31 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.31 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.31 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.3 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.3 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.3 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.3 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.29 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.29 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.29 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.28 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.28 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.27 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.26 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.26 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.26 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.25 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.25 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.25 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.25 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.25 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.24 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.24 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.23 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.23 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.23 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.23 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.22 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.21 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.2 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.2 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.2 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.2 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.18 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.17 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.16 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.14 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.13 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.13 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.12 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.12 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.11 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.1 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.1 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.09 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.07 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.06 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.06 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.04 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.04 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.03 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.03 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.02 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.01 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.99 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.98 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.97 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.93 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.93 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.93 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.92 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.91 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.89 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.89 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.87 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.86 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.85 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.84 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.84 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.84 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.78 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.77 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.77 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.75 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.75 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.74 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.72 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.66 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.64 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.64 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.63 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.62 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.61 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.59 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.57 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.54 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.52 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.52 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.52 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.51 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.48 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.43 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.42 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.39 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.39 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.38 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.36 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.36 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.34 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.31 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.29 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.26 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.24 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.16 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.16 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.07 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.04 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.04 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.02 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.0 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.98 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.97 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 97.97 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.87 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.86 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.86 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.85 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.71 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.65 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.61 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.56 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.44 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.28 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.25 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.18 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 97.15 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.91 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.85 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.74 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.42 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.37 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.22 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.01 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.0 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.56 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.44 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 94.82 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 94.7 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.6 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 94.54 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.15 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.52 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 93.46 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 93.27 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 92.94 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 92.57 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 92.48 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 88.84 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 88.44 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 87.13 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 86.26 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 85.68 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 84.88 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 84.18 |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=335.12 Aligned_cols=457 Identities=66% Similarity=1.168 Sum_probs=362.2
Q ss_pred CHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHH
Q 011056 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (494)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~ 108 (494)
+.|+++.+++..++.+++|....+++++|.+++|.+..+.++++.+..+.+.+.+|+.|+++||+++|+||||++++.+.
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA 81 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhccccccccCCCC--CCcchHHHHHHHHHHhhccccccccc----------ccc-chhhHHhHHHHHHH
Q 011056 109 ISIAVAVLLIGLSADIGWLLGDRG--DFRPRAIAVFVFGFWILDVANNMTQG----------KDH-RRTRVANAYFSLFM 175 (494)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~r~~~~~~~~~~~~ 175 (494)
+..+++..+++++++.+.++.++. .......+...++..+.+.+.+..+. +++ +|.+.+.++.+.+.
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~ 161 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM 161 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence 888888888888877654443221 11122223344444444444443333 443 33345899999999
Q ss_pred HHHHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccch
Q 011056 176 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 255 (494)
Q Consensus 176 ~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 255 (494)
++|.++|+.+|++..+...+|+..+........+.+..|++.+++.++..++.++..||.|..++++.++++ .++.++
T Consensus 162 ~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~--~~~~~~ 239 (477)
T TIGR01301 162 AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE--AAPPSK 239 (477)
T ss_pred HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh--cccccc
Confidence 999999999998865555566655554555566899999999999999999999999998753322211001 111111
Q ss_pred hhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHH
Q 011056 256 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 335 (494)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (494)
.+.+..++++++.+++.||.++.+++++++.|++++++..|.+.|+++++|+.++..+..|+++...+.+++..+++.+.
T Consensus 240 ~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~ 319 (477)
T TIGR01301 240 HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG 319 (477)
T ss_pred cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 12345678999999999999999999999999999999999999999999998887777899998899999999999889
Q ss_pred HHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHHHHHHHHHhhhhccc-cCC--C-CCCCchHHHHHHHHHHHhhHhhhhhh
Q 011056 336 ITSVLMEKLCRKWGA-GFIWGISNILMALCFLAMLILYYVAIHMDY-RGH--D-LPPNGIVIAALIIFTILGGPLAITYS 410 (494)
Q Consensus 336 i~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~~~~~g~~~~~~~~ 410 (494)
+.+++..++.+|+|+ |+.+.++.++.++++....+.+..+++.+. +++ . .|..+..+..++.+.+.|+.++..++
T Consensus 320 i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~s 399 (477)
T TIGR01301 320 ITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYS 399 (477)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999984 777799999999999988876533222110 000 1 12222247778888999999999999
Q ss_pred chhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCC
Q 011056 411 VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 487 (494)
Q Consensus 411 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 487 (494)
+|++++++..+++.++.|..+|+.|.+..++|.+..+..|.+.+..|++...++.++++.++++++..++..|+.++
T Consensus 400 iPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 400 IPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999644788999999999999999999999999888888788888999999999999999998887654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=276.05 Aligned_cols=441 Identities=56% Similarity=0.994 Sum_probs=327.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHH
Q 011056 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (494)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~ 110 (494)
++++.++...++.+++|.....++++|.+++|++..+.+.++.+..+.+.+.+|+.|..+||.++|+|||||++..+.+.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 77788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCC--CCcchHHHHHHHHHHhhccccccccc-----------cccchhhHHhHHHHHHHHH
Q 011056 111 IAVAVLLIGLSADIGWLLGDRG--DFRPRAIAVFVFGFWILDVANNMTQG-----------KDHRRTRVANAYFSLFMAV 177 (494)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~r~~~~~~~~~~~~~~ 177 (494)
..++.++..++.+++.++++.. ........+..+++++++++.+..++ +++++++ ++++...+.++
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~-Ans~f~~f~av 190 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR-ANSVFSFFMAV 190 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc-cchhHHHHHHh
Confidence 9999999999999998887753 24567788889999999999988887 4555554 99999999999
Q ss_pred HHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhh
Q 011056 178 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 257 (494)
Q Consensus 178 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 257 (494)
|+.+|+.+|++.++.+.+++.........-.+.+..+.....+..+.-........|+|...+. .+.+.+..
T Consensus 191 GnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~--------~~~~~~~~ 262 (498)
T KOG0637|consen 191 GNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKG--------TTARSKSS 262 (498)
T ss_pred cceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCc--------cccccccc
Confidence 9999999999988888887764432222222223333222222222111111111121111110 11111112
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCc------cccccchhhHHHHHHHH
Q 011056 258 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQ------NYATGVRMGALGLMLNS 331 (494)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 331 (494)
+.+.+.|....+++.||.+|.+++...++|.+++.+..|.+.++++++|++++.... .|+.++..|.+++.+++
T Consensus 263 ~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins 342 (498)
T KOG0637|consen 263 KLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNS 342 (498)
T ss_pred CcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHH
Confidence 233455777788999999999999999999999999999999999999999888764 79999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHH--HHHHHHHHHHHHHHhhhhcc-ccCCC-CCCCchHHHHHHHHHHHhhHhhh
Q 011056 332 VVLGITSVLMEKLCRKWGAGFIWGISNI--LMALCFLAMLILYYVAIHMD-YRGHD-LPPNGIVIAALIIFTILGGPLAI 407 (494)
Q Consensus 332 ~~~~i~~~~~g~l~dr~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~g~~~~~ 407 (494)
+...+.+....++.||+|-|+.+..+.. ..+.++..+....+...+.+ ..+.. .+.....+.++...-..++-..+
T Consensus 343 ~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~ 422 (498)
T KOG0637|consen 343 IVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAI 422 (498)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCcccc
Confidence 9999999999999999995554433333 33333333222222111111 11100 11112344455556666766777
Q ss_pred hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 408 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
.+.++++..+......++.+|...|+.|....+.|.+.....|.+.+..|.+....+...+...+++.+..+.
T Consensus 423 t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~i~al~ 495 (498)
T KOG0637|consen 423 TFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGGIVALL 495 (498)
T ss_pred ccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHHHHheE
Confidence 7777888777555554577799999999999999999999999999999977777777777777777665543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=249.09 Aligned_cols=381 Identities=18% Similarity=0.156 Sum_probs=290.1
Q ss_pred CCCCCHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhH
Q 011056 25 RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (494)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l 104 (494)
+++..+..++.++...|+...........+|++.+|+|+|..+.|++.++|.++.+++.|+...+.| |+.|||.++
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~----r~~Rr~lLl 82 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTG----RLERRRLLL 82 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccchHHHHH
Confidence 3445566777788888887777778888999999999999999999999999999999999999999 999988665
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhh-ccccccccc--cccchhhHHhHHHHHHHHHHHHH
Q 011056 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL-DVANNMTQG--KDHRRTRVANAYFSLFMAVGNIL 181 (494)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~r~~~~~~~~~~~~~~g~~~ 181 (494)
. ...+++++.+++++++|+..+ ...+++.++..+.+ ..+...... ++++|++ +.+....+..++.++
T Consensus 83 ~-~l~lFi~~n~l~alAp~f~~L--------l~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~-Aiaiv~~G~tlA~v~ 152 (394)
T COG2814 83 G-LLALFIVSNLLSALAPSFAVL--------LLARALAGLAHGVFWSIAAALAARLVPPGKRGR-ALALVFTGLTLATVL 152 (394)
T ss_pred H-HHHHHHHHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHcCccchhh-HHHHHHHHHHHHHHH
Confidence 5 778888899999999999322 23334444444443 222222222 8888887 999999999999999
Q ss_pred HhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhH
Q 011056 182 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 261 (494)
Q Consensus 182 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (494)
|..+|.+++. + .+||..|++.+.+.++..+..+..+| |++.+++ ++.+
T Consensus 153 GvPLGt~ig~-----~----------~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~---------------~~~~ 200 (394)
T COG2814 153 GVPLGTFLGQ-----L----------FGWRATFLAIAVLALLALLLLWKLLP--PSEISGS---------------LPGP 200 (394)
T ss_pred hccHHHHHHH-----H----------hhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC---------------CCcc
Confidence 9999987421 1 18999999999999999888888888 2211111 1223
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 011056 262 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 341 (494)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 341 (494)
.++..+.+|+ ++.+...+..++...+.+...+|..+++.+ ..+.+. +.-++.+..++++.++++.+.
T Consensus 201 ~~~~~~~l~~--p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~-v~g~s~----------~~vs~~Ll~~Gv~~~~Gn~~g 267 (394)
T COG2814 201 LRTLLRLLRR--PGVLLGLLATFLFMTGHFALYTYIRPFLES-VAGFSV----------SAVSLVLLAFGIAGFIGNLLG 267 (394)
T ss_pred hhHHHHHhcC--chHHHHHHHHHHHHcchhhhHHhHHHHHHH-ccCCCH----------hHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888 899999999999999999999999999963 333222 223455677899999999999
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcc
Q 011056 342 EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 421 (494)
Q Consensus 342 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 421 (494)
|++.|| +.|+.+.....+.++.++.+.+.. . +.+...+...++|+.........+...++..|
T Consensus 268 Grl~dr-~~~~~l~~~~~l~a~~~l~l~~~~--------------~--~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p 330 (394)
T COG2814 268 GRLADR-GPRRALIAALLLLALALLALTFTG--------------A--SPALALALLFLWGFAFSPALQGLQTRLARLAP 330 (394)
T ss_pred hhhccc-cchhHHHHHHHHHHHHHHHHHHhc--------------c--hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC
Confidence 999999 989988888888888888777663 2 34555556666777666555444444555333
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCC
Q 011056 422 SLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 486 (494)
Q Consensus 422 ~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 486 (494)
+.++.+.+++....++|-.+|..++|.+.|+.| +....++.+++.+++.++.+...++++
T Consensus 331 ---~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g--~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 331 ---DAADLAGSLNVAAFNLGIALGAALGGLVLDALG--YAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 788999999999999999999999999999976 777788888888888777765544433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-30 Score=229.92 Aligned_cols=391 Identities=14% Similarity=0.117 Sum_probs=269.9
Q ss_pred CHHHHHHHHHhhhHHHHHHHHH---HHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHH
Q 011056 29 PLRKLLKVASVAGGIQFGWALQ---LSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (494)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~ 105 (494)
++|++-.+...+++....|... +...|.+.++.++|.+|+|++.+++.+.+.++..+.|.++| |.+.|+ ++.
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sD----r~npr~-fm~ 98 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSD----RSNPRY-FMA 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc----cCCCce-eeh
Confidence 3445445555556665445444 33578888999999999999999999999999999999999 999977 556
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhh-ccccccccc------cccchhhHHhHHHHHHHHHH
Q 011056 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL-DVANNMTQG------KDHRRTRVANAYFSLFMAVG 178 (494)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~r~~~~~~~~~~~~~~g 178 (494)
.++++.++..+++++++++ ..+.++-..-+.+ ..+...... +.+||++ ..++.++..++|
T Consensus 99 ~gLilsai~nil~Gfs~s~------------~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~-~~siWn~shNiG 165 (448)
T COG2271 99 FGLILSAIVNILFGFSPSL------------FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGT-WWSIWNTSHNIG 165 (448)
T ss_pred HHHHHHHHHHHHHhhhhHH------------HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCc-eEEEehhhhhcc
Confidence 6999999999999998876 2222222222222 222222222 8899998 999999999999
Q ss_pred HHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC----CCCCCccccccc
Q 011056 179 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ----SAPFSEEGHEQS 254 (494)
Q Consensus 179 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~----~~~~~~~~~~~~ 254 (494)
..+.+++..+ .+... ..+||..|++.+++.++..++.++..+|+|+...-. -+.++.+..+++
T Consensus 166 Gal~~~~~~l-------a~~~~------~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~ 232 (448)
T COG2271 166 GALAPLVALL-------AFFAF------HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEE 232 (448)
T ss_pred cchHHHHHHH-------HHHHh------ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhh
Confidence 9988888621 11111 127999999999999999999999999998753211 111111110111
Q ss_pred hhhhhhHHHHH--HHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHH
Q 011056 255 SDVHEAFLWEL--FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 332 (494)
Q Consensus 255 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (494)
++.+..+.+++ ...++| |.+|.+++.+++.+..-+.+..+.|.|+.|.. +++.. .+......+-.
T Consensus 233 ~~~~~ls~~~i~~~YVL~N--k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k---------~~s~~--~a~~a~~lfE~ 299 (448)
T COG2271 233 KENEGLTAWQIFVKYVLKN--KLIWLLALANVFVYVVRYGINDWGPLYLSEVK---------GFSLV--KANWAISLFEV 299 (448)
T ss_pred ccCCCccHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc---------CCCHH--HHHHHHHHHHH
Confidence 11111223333 345677 99999999999999999999999999997643 23222 22355566778
Q ss_pred HHHHHHHHHHHHHhhh--cchHHH-HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhh
Q 011056 333 VLGITSVLMEKLCRKW--GAGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 409 (494)
Q Consensus 333 ~~~i~~~~~g~l~dr~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 409 (494)
++++++++.|+++||. |||... ++.+++..++.+.+... |.. +.+...+++.+.|+....-.
T Consensus 300 agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~--------------~~~-~~~l~~~~l~~iGf~IyGPq 364 (448)
T COG2271 300 AGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA--------------PNG-SYLLDAILLFIIGFLIYGPQ 364 (448)
T ss_pred HhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC--------------CCc-cHHHHHHHHHHHHHHHhhHH
Confidence 8999999999999998 666655 34444554555444443 322 45566666666676544444
Q ss_pred hchhhhHhhhcccCCCCcchhhhHHHHHHHH-HHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcc
Q 011056 410 SVPYALVSIRTESLGLGQGLSLGVLNLAIVI-PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 482 (494)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (494)
-+.-....|..|. +..|++.|+...+.++ |.+++....|++.|.+| +...|.+..+.++++.++.+...
T Consensus 365 mLiGl~a~e~~pK--~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g--W~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 365 MLIGLAAAEFVPK--KAAGTATGFVGLFAYLIGAALAGLPLGYIADTWG--WDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred HHHHHHHhccccH--hhccchhchhhhHHHHhhHHhcCCcceeeEecCC--CcchHHHHHHHHHHHHHHHHHHH
Confidence 4455566788888 8999999999999999 99999999999999877 56667666666666655544433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-29 Score=239.03 Aligned_cols=365 Identities=15% Similarity=0.090 Sum_probs=242.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHH
Q 011056 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (494)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~ 111 (494)
..+.+....+..........+.+|.+.+++|.|+++.|++.+.+.++..+++++.|.++| |+||||.++. +.+..
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~ 84 (390)
T PRK03545 10 RVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTS----NVERRKLLIG-LFVLF 84 (390)
T ss_pred HHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCChHHHHHH-HHHHH
Confidence 344444433333233334445789999999999999999999999999999999999999 9999987666 66777
Q ss_pred HHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhh----ccccccccc---cccchhhHHhHHHHHHHHHHHHHHhh
Q 011056 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL----DVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYA 184 (494)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~ 184 (494)
.++.+.+.+++|++ ...+.++..+.. ......... ++++|++ +.++.....++|..+|+.
T Consensus 85 ~~~~~~~~~~~~~~------------~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~g~~~~~~~~g~~ig~~ 151 (390)
T PRK03545 85 IASHVLSALAWNFT------------VLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQ-ALSLLATGTALAMVLGLP 151 (390)
T ss_pred HHHHHHHHHhccHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhh-HHHHHHHHHHHHHHHHhh
Confidence 77878888888873 222222222221 111112212 6677776 999999999999999999
Q ss_pred hcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHH
Q 011056 185 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 264 (494)
Q Consensus 185 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (494)
+++.+ ... .+||+.|++.+++.++..+......||++++++ ...++
T Consensus 152 l~~~l-----~~~----------~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-------------------~~~~~ 197 (390)
T PRK03545 152 LGRVI-----GQY----------LGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS-------------------GSLKS 197 (390)
T ss_pred HHHHH-----HHH----------hcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc-------------------chHHH
Confidence 87752 111 179999999888777666655555665432110 01223
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011056 265 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 344 (494)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l 344 (494)
..+.+++ +.++......++..........|.++++.+ .++.+.. .........+++.++++++.+++
T Consensus 198 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~~----------~~~~~~~~~~~~~~~g~~~~g~l 264 (390)
T PRK03545 198 LPLLFRR--PALVSLYLLTVVVVTAHFTAYSYIEPFVQQ-VAGLSEN----------FATLLLLLFGGAGIIGSVLFSRL 264 (390)
T ss_pred HHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCcc----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666 666655554444444444445566666643 2332221 11233444567789999999999
Q ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCC
Q 011056 345 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 424 (494)
Q Consensus 345 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 424 (494)
.||+++|+.. .+..+..++...+.... + +.+...+...+.|++.+...+.....+.+..|
T Consensus 265 ~dr~~~~~~~-~~~~~~~~~~~~l~~~~-------------~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~--- 324 (390)
T PRK03545 265 GNRHPSGFLL-IAIALLLVCLLLLLPAA-------------N---SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP--- 324 (390)
T ss_pred hhccchhHHH-HHHHHHHHHHHHHHHHh-------------c---hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC---
Confidence 9999987654 34444444433332221 1 34555666777787776655556666677655
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 425 LGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 425 ~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
+++|+++|+.+....+|+.+||.++|.+.|..| +...+.+.+++.+++++......+
T Consensus 325 ~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 325 DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG--LSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hhHHHHHHHHHHHHHHHHHHHHcc
Confidence 577999999999999999999999999999987 677888888888887777666554
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=225.36 Aligned_cols=380 Identities=16% Similarity=0.237 Sum_probs=272.5
Q ss_pred CCCCCCHHHHHHHHHhhhHHHHHHHHHHHhHHHH-HHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcch
Q 011056 24 ARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPY-VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRP 102 (494)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~ 102 (494)
..++.+.++.+.+++..++.++.+.....++..+ .+..|+|+..+|.+..+..+.+++.+|+.|.++||+++|+|||||
T Consensus 5 ~~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP 84 (467)
T COG2211 5 SSKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRP 84 (467)
T ss_pred ccCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccH
Confidence 3457889999999999999888887777766654 577999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHH----HHHHhhccccccccc----cccchhhHHhHHHHHH
Q 011056 103 FIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFV----FGFWILDVANNMTQG----KDHRRTRVANAYFSLF 174 (494)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~ 174 (494)
+++.+.+..++...+++.+++... ........+.. ++..+.+..+.+..+ +++||.+ ..++...+
T Consensus 85 ~lL~g~ip~~i~~~l~F~~p~~~~------~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~-l~s~R~~~ 157 (467)
T COG2211 85 WLLWGAIPFAIVAVLLFITPDFSM------TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERAS-LTSWRMVF 157 (467)
T ss_pred HHHHHhHHHHHHHHHHHcCCCccc------CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHH-HHHHHHHH
Confidence 999998888888888878776421 11222222222 222233444444433 7788887 89999999
Q ss_pred HHHHHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccc
Q 011056 175 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 254 (494)
Q Consensus 175 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 254 (494)
.++|..+...+... ....-.+++...+|+..-.+.+++.++..+.+++..+|++.+....++
T Consensus 158 ~~~g~~l~~~~~~p--------lv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~---------- 219 (467)
T COG2211 158 ASLGGLLVAVLFPP--------LVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT---------- 219 (467)
T ss_pred HHHHHHHHHHHHHH--------HHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc----------
Confidence 99887776555221 111111222244788888888888888888888889998753322200
Q ss_pred hhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHH
Q 011056 255 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 334 (494)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (494)
..+++..+++...++| |+++.+++..++.+.+..........|.. ...+.. + ......+.......
T Consensus 220 -~~~~~~~~~~~~~~~N--rp~~~~l~~~l~~~~~~~i~~s~~~yy~~-y~lg~~--------~--l~~~~~~~~~~~~~ 285 (467)
T COG2211 220 -GVKLKLKDSFLLIFKN--RPLLLLLLMNLLLFIAFNIRGSIMVYYVT-YVLGDP--------E--LFAYLLLLASGAGL 285 (467)
T ss_pred -cccccHHHHHHHHHcc--chHHHHHHHHHHHHHHHHHHhhhhheeEE-EEcCCh--------H--HHHHHHHHHHHHHH
Confidence 0012222233446667 77777777776666655444433333332 111111 0 12223344455666
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhh
Q 011056 335 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 414 (494)
Q Consensus 335 ~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 414 (494)
+++.++.+++.+|+|+|+++..+.++..++.+++.+. | ..+.+..++..++.+++.+...+.+++
T Consensus 286 l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~--------------~-~~~~~l~~~~~~i~~~g~~~~~~l~wa 350 (467)
T COG2211 286 LIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT--------------P-AGSVVLIVVALIIAGVGTGIANPLPWA 350 (467)
T ss_pred HHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh--------------c-CcchHHHHHHHHHHHHHhhccccccHH
Confidence 6778999999999999999999999999999988887 3 114666777778899999999999999
Q ss_pred hHhhhcccC-----CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 415 LVSIRTESL-----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 415 ~~~~~~~~~-----~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
+++|..+.+ +|..|..+|.++++.++|.+++..+.|++++..|
T Consensus 351 m~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 351 MVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999988753 4788999999999999999999999999999877
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=237.11 Aligned_cols=370 Identities=16% Similarity=0.065 Sum_probs=235.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhh
Q 011056 41 GGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (494)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~ 120 (494)
+...+.........|.+.+++|.|+.+.+++.+++.++..+++++.|+++| |+||||.++. +.+...++.+...+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~~~~~~~ 99 (406)
T PRK11551 25 LLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLAD----RIGRKRILIV-SVALFGLFSLATAQ 99 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHH-HHHHHHHHHHHHHH
Confidence 333344555556778899999999999999999999999999999999999 9999998776 55555666666667
Q ss_pred ccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchh
Q 011056 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF 197 (494)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~ 197 (494)
++++..+ .....+.+++.+........... ++++|++ +.++......+|..+++.++.... .
T Consensus 100 ~~~~~~~--------~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~~~-----~- 164 (406)
T PRK11551 100 AWDFPSL--------LVARLLTGVGLGGALPNLIALTSEAVGPRLRGT-AVSLMYCGVPFGGALASVIGVLAA-----G- 164 (406)
T ss_pred hccHHHH--------HHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc-----c-
Confidence 7776211 11122222222222111112222 5677776 999999999999999988765421 0
Q ss_pred hhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHH
Q 011056 198 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIW 277 (494)
Q Consensus 198 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (494)
..+|++.|++.++..++..++....+||++++.+++.+ +++ ++...+...+..+. +..+
T Consensus 165 ---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~--~~~~ 223 (406)
T PRK11551 165 ---------DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA------GKQ----RAPVLRALFGEGRA--TATL 223 (406)
T ss_pred ---------ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc------chh----hhhhHHHHhhhhhh--hHHH
Confidence 12689999888776666655566667887643322100 000 11111122211111 2233
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 011056 278 IILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGIS 357 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~ 357 (494)
......++.....+....|.+.++.+ .+.+.. ..........++.++++++.|++.||+|+|+.+..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~----------~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~ 291 (406)
T PRK11551 224 LLWISYFFTLIVLYFLLNWLPSLLVG--QGLSRS----------QAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLI 291 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CCCChh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333333334444555566776643 222221 112334445677899999999999999999988776
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHH
Q 011056 358 NILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLA 437 (494)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 437 (494)
.....++++.+... + +.+...+..++.|++.+...+..+++..|.+|+ +++|+..|+.+..
T Consensus 292 ~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~ 352 (406)
T PRK11551 292 YAGILASLAALAAA--------------P---SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT--QVRGTGVGAAVAV 352 (406)
T ss_pred HHHHHHHHHHHHhc--------------C---cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch--hhhhhhhhHHHHh
Confidence 66665555544433 1 234455566677777777777888899999998 9999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 438 IVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 438 ~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
..++..++|.+.|.+.+..+ .+...+.....+.+++.++.++..+
T Consensus 353 ~~~g~~~g~~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 353 GRLGSMAGPLLAGQLLALGR-STVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred hhHHHHHHhhhHhhhhccCC-chHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998754 2333455555555555555444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=236.98 Aligned_cols=364 Identities=15% Similarity=0.164 Sum_probs=240.4
Q ss_pred HHhhhHHHHHHHHHHHhHHHH-HHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHH
Q 011056 37 ASVAGGIQFGWALQLSLLTPY-VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (494)
Q Consensus 37 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~ 115 (494)
+...++.++.+.....+++++ .+++|+|+.++|++.++..+.+++.+|+.|+++||+++|+||||++++.+.+..+++.
T Consensus 5 g~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~ 84 (437)
T TIGR00792 5 GFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVL 84 (437)
T ss_pred ecchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHH
Confidence 444555566666666666555 4679999999999999999999999999999999999999999999988888888777
Q ss_pred HHHhhccccccccCCCCCCcchHHHHH----HHHHHhhccccccccc----cccchhhHHhHHHHHHHHHHHHHHhhhcc
Q 011056 116 LLIGLSADIGWLLGDRGDFRPRAIAVF----VFGFWILDVANNMTQG----KDHRRTRVANAYFSLFMAVGNILGYATGS 187 (494)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~~g~~~g~~~g~ 187 (494)
+++...++... .......... .++............. ++++|.+ ..++...+..+|..+++.+.+
T Consensus 85 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~-~~~~~~~~~~~g~~l~~~~~~ 157 (437)
T TIGR00792 85 VLLFTTPDFSA------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERES-LSTFRRFGATLGGLLVAVIVL 157 (437)
T ss_pred HHHHhCCCCCc------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 77766665411 0001111111 1112222223333322 4566766 888888888888777766543
Q ss_pred cccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHH
Q 011056 188 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFG 267 (494)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (494)
.+ ...... .....+|++.+.+.+++.++..++.++..||++++.+++ + ++ +.+..+.+++
T Consensus 158 ~l-----~~~~~~---~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~-------~-~~----~~~~~~~~~~ 217 (437)
T TIGR00792 158 PL-----VSYFGG---GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN-------I-EK----KLSLKQIFKA 217 (437)
T ss_pred HH-----HHHhCC---CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc-------c-cc----CCCHHHHHHH
Confidence 31 111110 011237999999888888777777777778765221110 0 00 1111223344
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011056 268 TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 347 (494)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr 347 (494)
.+++ |+++..++..++.+.+......+.+.+. +..++ ++ ...+ .......+..+++.++.+++.||
T Consensus 218 l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~---------~~~~-~~~~~~~i~~ii~~~~~~~l~~r 283 (437)
T TIGR00792 218 LFKN--DQLLILCLAYLFYNLAFNIKNGVQVYYF-TYVLG-DP---------ELFS-YMGSIAIVAGLIGVLLFPRLVKK 283 (437)
T ss_pred HhCC--HHHHHHHHHHHHHHHHHHHHcchhheeE-eeecC-Ch---------HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566 7777777777766665554433333333 22221 00 0111 22334567788999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccC----
Q 011056 348 WGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL---- 423 (494)
Q Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---- 423 (494)
+|+|+.+..+..+.+++.+.+.+. ++ +.+...+...+.+++.+...+..+++++|..|.+
T Consensus 284 ~g~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (437)
T TIGR00792 284 FGRKILFAGGILLMVLGYLIFFFA--------------GS--NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKT 347 (437)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHc--------------ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 999999988888877777665544 11 3445566667788888888888899998887631
Q ss_pred -CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 424 -GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 424 -~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
++.+|.++|+.++..++++.+++.+.|.+.+..|
T Consensus 348 ~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 348 GVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999999999876
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-28 Score=235.25 Aligned_cols=373 Identities=13% Similarity=0.100 Sum_probs=242.6
Q ss_pred CCCCHHHHHHHHHhhhHHHHHHHHHHHhHHH-HHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhH
Q 011056 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTP-YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (494)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l 104 (494)
++.+.++.+.+++..++.++.+.....++++ +.+++|+|+.++|.+.++..+.+++.+|+.|+++||+++|+||||+++
T Consensus 4 ~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~i 83 (444)
T PRK09669 4 SQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYL 83 (444)
T ss_pred CcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhH
Confidence 3567788888888887776665555555554 557899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHH----HHHhhccccccccc----cccchhhHHhHHHHHHHH
Q 011056 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVF----GFWILDVANNMTQG----KDHRRTRVANAYFSLFMA 176 (494)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~ 176 (494)
+.+.+..+++..+....++.+. .....+..+..+ ........+....+ ++++|.+ ..++......
T Consensus 84 l~~~~~~~i~~~l~f~~p~~~~------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~-l~~~r~~~~~ 156 (444)
T PRK09669 84 LWFAIPFGVVCLLTFYTPDFGA------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHS-LQSWRFALSF 156 (444)
T ss_pred HHHHHHHHHHHHHHHhCCCCCc------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHH-HHHHHHHHHH
Confidence 8787777777766655554310 111112222111 12222333333332 4466765 7788888888
Q ss_pred HHHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchh
Q 011056 177 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD 256 (494)
Q Consensus 177 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 256 (494)
+|..+++.++..+ ..+... .....+|+..+.+.+++..+..++.++..||++++++++
T Consensus 157 ~G~~i~~~~~~pl-----~~~~~~---~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~-------------- 214 (444)
T PRK09669 157 IGGLIVSVIALPL-----VDILGK---GDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDN-------------- 214 (444)
T ss_pred HHHHHHHHHHHHH-----HHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcC--------------
Confidence 8888776654221 111110 111236888888777777776666666667753321100
Q ss_pred hhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHH
Q 011056 257 VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGI 336 (494)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 336 (494)
+.+..+++++.++| |+++.++...++...+........ .|..+...+. + +..........+..++
T Consensus 215 -~~~~~~~~~~~~~n--~~~~~l~~~~~~~~~~~~~~~~~~-~y~~~~~~~~-~----------~~~~~~~~~~~i~~ii 279 (444)
T PRK09669 215 -SSSVWKDLKLLLGN--SQWRIMFIFNVVLLTAVVTRGGAT-LYYVNYVLLR-P----------DLATLFLVTGMIAGLF 279 (444)
T ss_pred -CCCHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHhhhh-heeeeeecCC-H----------HHHHHHHHHHHHHHHH
Confidence 11223455666677 777777766665554443322222 2221111110 0 1112223334566778
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhH
Q 011056 337 TSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 416 (494)
Q Consensus 337 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 416 (494)
+.++.+++.||+|+|+.+..+..+.+++.+.+.+.. ++ +.+..++..++.|++.+...+..++++
T Consensus 280 ~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 280 GALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP-------------PS--NVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC-------------cc--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999877766555444333331 11 345566677788999999999999999
Q ss_pred hhhcccC-----CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 417 SIRTESL-----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 417 ~~~~~~~-----~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
+|..|.+ ++..|..+|..+.+.++|+++++.+.|.+.+..|
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9998742 2566888999999999999999999999999876
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=238.33 Aligned_cols=379 Identities=12% Similarity=-0.000 Sum_probs=231.2
Q ss_pred HHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccccccc
Q 011056 49 LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (494)
Q Consensus 49 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 128 (494)
.....+|.+.+++|+|..+.|++.+++.++..+++++.|+++| |+|||+.+++ +.+...++.++..+++++..+
T Consensus 41 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~l- 114 (434)
T PRK11663 41 SFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSD----RSNARYFMGI-GLIATGIINILFGFSSSLWAF- 114 (434)
T ss_pred hHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHh----hcCCchhHHH-HHHHHHHHHHHHHHHhHHHHH-
Confidence 4456788999999999999999999999999999999999999 9999886655 666777777777777776211
Q ss_pred CCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccc
Q 011056 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNV 205 (494)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~ 205 (494)
.....+.+++.+........... ++++|++ +.++.....++|..+++.+++.+ ...
T Consensus 115 -------~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~-~~~~~~~~~~~g~~~~~~~~~~l-----~~~-------- 173 (434)
T PRK11663 115 -------ALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGG-WWAIWNTAHNVGGALIPLVVGAI-----ALH-------- 173 (434)
T ss_pred -------HHHHHHHHHHHHccchHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-----HHc--------
Confidence 11111122222221111111212 5566776 99999999999999999887652 111
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCC--CCC-ccccccchhhhhhHHHHHHH--HhhhchHHHHHHH
Q 011056 206 DCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSA--PFS-EEGHEQSSDVHEAFLWELFG--TFRYFSGTIWIIL 280 (494)
Q Consensus 206 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 280 (494)
.+||+.|.+.+++.++..++..+.+||+|++...+.. .++ .++.+++.+.++.+.++.++ .+++ +.++...
T Consensus 174 --~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 249 (434)
T PRK11663 174 --YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLN--PYIWLLS 249 (434)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcC--hHHHHHH
Confidence 2799999988776665555555567776643211110 000 00000000011112333322 3445 6677776
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh--cchHHH-HHH
Q 011056 281 IVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW--GAGFIW-GIS 357 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--g~~~~~-~~~ 357 (494)
...++.......+..+.+.|+.++ ++.+.. ..........++..+++++.|++.||+ ++|+.. ...
T Consensus 250 ~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~~----------~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~ 318 (434)
T PRK11663 250 FSYVLVYVVRAAINDWGNLYMSET-LGVDLV----------TANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF 318 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCCHH----------HHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence 666665555566667788887533 332221 112334445677899999999999998 333332 222
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHH
Q 011056 358 NILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLA 437 (494)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 437 (494)
.....+....+... +.. +...........|++.............|..|+ +++|++.|+.+..
T Consensus 319 ~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~ 381 (434)
T PRK11663 319 AAGILLSVGSLWLM--------------PFA-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK--EAAGAATGFVGLF 381 (434)
T ss_pred HHHHHHHHHHHHHc--------------ccc-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH--hhHHhHHHHHHHH
Confidence 21222222222111 110 122222222333332221222233456788877 8999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCCC
Q 011056 438 IVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 488 (494)
Q Consensus 438 ~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 488 (494)
..+|++++|.+.|++.|..| +...|...+++.+++++..+...++++++
T Consensus 382 ~~~g~~~~p~~~g~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 382 AYLGAALSGYPLAKVLEIWH--WTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHHHhcccHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 99999999999999999877 77788888888888777666655554443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=248.70 Aligned_cols=404 Identities=12% Similarity=0.091 Sum_probs=253.0
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
+........+|.+.+++|++..+.+++.+++.++..++++++|+++| |+|||+.+++ +.++.+++.++.++++++
T Consensus 181 ~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsD----R~GRR~~lii-~lil~~i~~ll~afa~s~ 255 (742)
T TIGR01299 181 VEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLAD----KLGRKQCLLI-CLSVNGFFAFFSSFVQGY 255 (742)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHH-HHHHHHHHHHHHHHHhhH
Confidence 33344555778888999999999999999999999999999999999 9999987776 555556666666777776
Q ss_pred ccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcc
Q 011056 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 201 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~ 201 (494)
..+ ....++.+++.+........... +++.|++ ..++...+..+|.++++.++..+. ..++|....
T Consensus 256 ~~l--------lv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~-~~g~~~~~~~iG~ila~~la~~il--~~~G~~~~~ 324 (742)
T TIGR01299 256 GFF--------LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGE-HLSWLCMFWMIGGIYAAAMAWAII--PHYGWSFQM 324 (742)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--Hhccchhcc
Confidence 221 22233333333332222222222 6677776 899999999999999887765421 011221110
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC-------------------Ccc------------c
Q 011056 202 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF-------------------SEE------------G 250 (494)
Q Consensus 202 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-------------------~~~------------~ 250 (494)
.......+||+.+++.++..++ .++..+++||+|++...+++.+ +.+ +
T Consensus 325 g~~~~~~gWR~l~~i~~lp~ll-~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~ 403 (742)
T TIGR01299 325 GSAYQFHSWRVFVIVCAFPCVF-AIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQE 403 (742)
T ss_pred ccccccccHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhh
Confidence 0011123799988887665444 4455677899987532111100 000 0
Q ss_pred c---c-cchhh---------hh----hHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh---h----
Q 011056 251 H---E-QSSDV---------HE----AFLWELFGTFRY-FSGTIWIILIVTALTWLGWFPFLLFDTDWMGRE---I---- 305 (494)
Q Consensus 251 ~---~-~~~~~---------~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---- 305 (494)
+ + +++.. .. ..+.++.+.++. .+++.+.+++..+...++++.+..|+|..+... -
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~ 483 (742)
T TIGR01299 404 DELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAAL 483 (742)
T ss_pred hhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 0 00000 00 000112222222 123445555666666777888888888765321 0
Q ss_pred ---cCC----------CCC--------------------------------------CCc--------------------
Q 011056 306 ---YGG----------EPN--------------------------------------EGQ-------------------- 314 (494)
Q Consensus 306 ---~~~----------~~~--------------------------------------~~~-------------------- 314 (494)
++. +.. ...
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 563 (742)
T TIGR01299 484 TKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEE 563 (742)
T ss_pred hccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhh
Confidence 000 000 000
Q ss_pred ------------------ccccc-------chhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Q 011056 315 ------------------NYATG-------VRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAML 369 (494)
Q Consensus 315 ------------------~~~~~-------~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~ 369 (494)
+.+.. .....+...+..++.+++.++.++++||+|||+++.++.++.+++++++.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~ 643 (742)
T TIGR01299 564 YKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS 643 (742)
T ss_pred hhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 00000 00111223445678899999999999999999999999999888888777
Q ss_pred HHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhh
Q 011056 370 ILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGS 449 (494)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~ 449 (494)
+.. +...++++.++.+++.+...+..+++++|.+|+ +.||+++|+.+....+|.+++|.++
T Consensus 644 ~~~-----------------s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt--~~Rgta~Gi~~~~~rlGaiigp~i~ 704 (742)
T TIGR01299 644 FGN-----------------SESAMIALLCLFGGLSIAAWNALDVLTVELYPS--DKRATAFGFLNALCKAAAVLGILIF 704 (742)
T ss_pred HHc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 652 234445555667777777778888999999999 8999999999999999999999999
Q ss_pred hhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCCC
Q 011056 450 GPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 488 (494)
Q Consensus 450 g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 488 (494)
|.+.+.. ....|++.+++.++++++.++ .||++++
T Consensus 705 g~L~~~~---~~~pf~i~a~~lll~~ll~~~-LPET~~~ 739 (742)
T TIGR01299 705 GSFVGIT---KAAPILFASAALACGGLLALK-LPDTRGQ 739 (742)
T ss_pred HHHHHhh---hHHHHHHHHHHHHHHHHHHHh-CCCCccc
Confidence 9887752 345677777777777666654 4776653
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-27 Score=228.60 Aligned_cols=369 Identities=14% Similarity=0.132 Sum_probs=241.6
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHhCCCchh-----HHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHH
Q 011056 37 ASVAGGIQFGWALQLSLLTPYVQELGIPHAW-----ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (494)
Q Consensus 37 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~-----~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~ 111 (494)
....+...+.+....+++|.+.+++|.+..+ .|++.+++.+...+++|+.|+++| |+||||.++. +.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~ 94 (408)
T PRK09874 20 WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLAD----RKGRKIMLLR-SALGM 94 (408)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhCcHHHHHH-HHHHH
Confidence 3344445567777778999999999998654 488999999999999999999999 9999887765 56666
Q ss_pred HHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhcccccc---ccc---cccchhhHHhHHHHHHHHHHHHHHhhh
Q 011056 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNM---TQG---KDHRRTRVANAYFSLFMAVGNILGYAT 185 (494)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~ 185 (494)
.++.++..++++++ ...+..+..++....... ... ++++|++ +.+.......+|..+++.+
T Consensus 95 ~~~~~~~~~~~~~~------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~ 161 (408)
T PRK09874 95 GIVMVLMGLAQNIW------------QFLILRALLGLLGGFVPNANALIATQVPRNKSGW-ALGTLSTGGVSGALLGPLA 161 (408)
T ss_pred HHHHHHHHHHhhHH------------HHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhH-HHHHHHHHHHHHHHHHHHH
Confidence 66666666766652 222222222221111111 111 5666666 8899999999999999988
Q ss_pred cccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHH
Q 011056 186 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWEL 265 (494)
Q Consensus 186 g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (494)
++.+ ... .+|++.|.+.++..++..+...+..||++++.+++ ++...++.
T Consensus 162 ~~~l-----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 211 (408)
T PRK09874 162 GGLL-----ADS----------YGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK---------------EMLHMREV 211 (408)
T ss_pred HHHH-----HHH----------hCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch---------------hhhHHHHH
Confidence 7752 111 16899998888777766666666677754221111 01112334
Q ss_pred HHHhhhchHHHHH-HHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011056 266 FGTFRYFSGTIWI-ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 344 (494)
Q Consensus 266 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l 344 (494)
.+.+++ ++++. .....+...........+.+.|..+.. +... +.. ..........++...++.+..+++
T Consensus 212 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~-~~~g~~~~~~~l~~~~~~~~~g~l 281 (408)
T PRK09874 212 VTSLKN--PKLVLSLFVTTLIIQVATGSIAPILTLYVRELA-GNVS------NIA-FISGMIASVPGVAALLSAPRLGKL 281 (408)
T ss_pred HHhCcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccch------HHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 44433 222222333333333344555554321 1000 000 011122223456677888889999
Q ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCC
Q 011056 345 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 424 (494)
Q Consensus 345 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 424 (494)
.||+|||+.+..+..+..++.+...... +.+...+...+.|++.+...+...+.+.+..|+
T Consensus 282 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-- 342 (408)
T PRK09874 282 GDRIGPEKILITALIFSVLLLIPMSFVQ-----------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSN-- 342 (408)
T ss_pred HhccccchhHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCc--
Confidence 9999999998888777766665544432 345556666778888888887777888888887
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 425 LGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 425 ~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
+++|+.+++.+....+|..+||.++|.+.+..| +...|.+.+++.+++.+..++..++
T Consensus 343 ~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 343 QIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG--FRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred ccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999876 7778888888888877766554443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-27 Score=227.48 Aligned_cols=371 Identities=18% Similarity=0.190 Sum_probs=232.0
Q ss_pred CHHHHHHHHHhhhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHH
Q 011056 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (494)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~ 107 (494)
.++++..+....+...++..+..+.+|.+. +++|.|+.+.|++.+++.++..+++|+.|+++| |+||||.++. +
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D----r~g~r~~l~~-~ 87 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYAD----TLGPKKAVVF-G 87 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHh----ccCCcchHHH-H
Confidence 345555555555666677777778888865 779999999999999999999999999999999 9999997776 4
Q ss_pred HHHHHHHHHHHhh---ccccccccCCCCCCcchHHH----HHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHH
Q 011056 108 AISIAVAVLLIGL---SADIGWLLGDRGDFRPRAIA----VFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAV 177 (494)
Q Consensus 108 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~ 177 (494)
.+..+++.+.+.+ .++.. ........ +.+++.+........... ++++|++ +.++......+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~ 159 (399)
T PRK05122 88 LCGCALSGLLYLLAGLLAAWP-------VLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGR-VISWNGIATYG 159 (399)
T ss_pred HHHHHHHHHHHHHhhhhhccc-------hhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhcc-chhhhhhhhhH
Confidence 4444443333322 22210 00011122 222222222222222211 6677776 89998888999
Q ss_pred HHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhh
Q 011056 178 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 257 (494)
Q Consensus 178 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 257 (494)
|..+|+.+++.+ ... .+|++.+.+.++..++..+. ....||.++ ++ + +
T Consensus 160 g~~~g~~l~~~l-----~~~----------~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~-------~-~----- 207 (399)
T PRK05122 160 ALAIGAPLGVLL-----YHW----------GGLAGLGLLIMLLALLGLLL-ARPRPAVPP---VK-------G-E----- 207 (399)
T ss_pred HHHHHHHHHHHH-----HHc----------ccHHHHHHHHHHHHHHHHHH-HhcCCCCCC---CC-------c-c-----
Confidence 999999887752 111 16888777665544333222 121222111 00 0 0
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHH
Q 011056 258 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 337 (494)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 337 (494)
+.+.++.. ++ .+.......+...++.....+.+.++.+. +.+ ..........++.+++
T Consensus 208 -~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~~~~~~~ 265 (399)
T PRK05122 208 -RLPFRRVL---GR----VWPYGMGLALASIGFGTIATFITLYYAAR--GWD------------GAALALTLFGVAFVGA 265 (399)
T ss_pred -chhHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccc------------cchHHHHHHHHHHHHH
Confidence 00111111 11 11111112222233334444555555321 110 0112233456667888
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHh
Q 011056 338 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 417 (494)
Q Consensus 338 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 417 (494)
.++.+++.||+++|+.+..+..+.+++.+.+...+ +.+..++..++.|++.+...+.......
T Consensus 266 ~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~ 328 (399)
T PRK05122 266 RLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP-----------------SPWMALIGAALTGFGFSLVFPALGVEAV 328 (399)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999988888777777776665542 3455566677888888877777667778
Q ss_pred hhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCC
Q 011056 418 IRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 487 (494)
Q Consensus 418 ~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 487 (494)
|..|+ +++|+++|+.+....+|..+++.+.|.+.+..| +...+.+.+++.+++.+..+++.++.++
T Consensus 329 ~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (399)
T PRK05122 329 KRVPP--QNRGAALGAYSVFLDLSLGITGPLAGLVASWFG--YPSIFLAAALAALLGLALTWLLYRRAPR 394 (399)
T ss_pred HhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 88888 899999999999999999999999999999876 6777888777777777666655444333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=240.68 Aligned_cols=373 Identities=13% Similarity=0.066 Sum_probs=227.5
Q ss_pred HHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHh-----hccccc
Q 011056 51 LSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG-----LSADIG 125 (494)
Q Consensus 51 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~-----~~~~~~ 125 (494)
....|.+.+++|+|+.+.|++.+++.+++.+++++.|+++| |+||||.+.. +.+...+..+..+ .++++.
T Consensus 49 ~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~r~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 123 (467)
T PRK09556 49 KAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD----GKNTKQFLPF-LLILSAICMLGFGASLGSGSVSLG 123 (467)
T ss_pred hhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh----ccCccchHHH-HHHHHHHHHHHHHHHHhcccchHH
Confidence 45688889999999999999999999999999999999999 9999997654 4334333333332 345552
Q ss_pred cccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhccc
Q 011056 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSA 202 (494)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~ 202 (494)
.+ ...+.+.+++.+........... ++++|++ +.++.....++|.++++.+..+. ....
T Consensus 124 ~l--------~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~-a~gi~~~~~~lG~~l~~~i~~~~-----~~~~---- 185 (467)
T PRK09556 124 LM--------IALWALSGFFQSTGGPCSYSTITRWTPRRKRGR-FLGFWNISHNLGGAGAGGVALWG-----ANYF---- 185 (467)
T ss_pred HH--------HHHHHHHHHHHhccchHHHHHHHHHcCccceee-eEEeeecccchhhhHHHHHHHHH-----HHhh----
Confidence 11 11112222222221111111222 6777887 99999999999999988775431 1100
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC--Ccc--ccccchhhhhhHHHH-HH-HHhhhchHHH
Q 011056 203 CNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF--SEE--GHEQSSDVHEAFLWE-LF-GTFRYFSGTI 276 (494)
Q Consensus 203 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 276 (494)
...+|+..|.+.+++.++..++.++..+|+|++.....+++ .+. +++++.+.++...++ .. +.+++ +.+
T Consensus 186 ---~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 260 (467)
T PRK09556 186 ---FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKN--PVI 260 (467)
T ss_pred ---ccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcC--hHH
Confidence 01258888888777776666666666666654321111000 000 000000001111122 12 25666 888
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 011056 277 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI 356 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~ 356 (494)
|..++..++..........+.|.|+.++ ++.+.. ..........++.+++.++.|+++||+++|+....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~p~yl~~~-~g~s~~----------~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~ 329 (467)
T PRK09556 261 WLLCFANIFLYIVRIGIDNWSPVYAFQE-LGFSKE----------DAINTFTLFEIGALVGSLLWGWLSDLANGRRALVA 329 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 8888888777777777777888888533 332221 11233444566789999999999999999887665
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHH
Q 011056 357 SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNL 436 (494)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 436 (494)
...+..++........ .. +.+...+..++.|+..............|.+|+ +.+|++.|+.+.
T Consensus 330 ~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~--~~~g~a~gi~~~ 392 (467)
T PRK09556 330 CIALALIIFTLGVYQH-------------AT--SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK--KAIGVANGIKGT 392 (467)
T ss_pred HHHHHHHHHHHHHHHh-------------cC--cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch--hhHHHHHHHHHH
Confidence 4444333322222221 11 233344445555543322222233566799998 899999999999
Q ss_pred HHHH-HHHHHhhhhhhhhh------------hcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 437 AIVI-PQIVVSMGSGPWDQ------------LFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 437 ~~~~-g~~l~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
...+ |.+++|.+.|.+.| ..| +...|.+..++.+++.+..++.
T Consensus 393 ~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 393 FAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG--WAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHhHHHHhhhHHHHhcccccccccccccccC--hHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 77999999999999 333 6667877777777776655544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=228.21 Aligned_cols=362 Identities=13% Similarity=0.048 Sum_probs=240.9
Q ss_pred HHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccc
Q 011056 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (494)
Q Consensus 48 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (494)
....+.+|.+.+++|+|.++.|++.+++.++..+++++.|+++| |+||||+++. +.++.+++.+.+++++++..
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~d----r~G~r~~l~~-~~~l~~~~~~~~~~a~~~~~- 99 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQ----HVSERRSVAI-SLLLIAVGALMRELYPQSAL- 99 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH----HhCchHHHHH-HHHHHHHHHHHHHHCcchHH-
Confidence 34457889999999999999999999999999999999999999 9999997766 77888888898889998832
Q ss_pred cCCCCCCcchHHHHHHHHHHhhccccccccc--cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccc
Q 011056 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQG--KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNV 205 (494)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~ 205 (494)
....+.+.+++.+........... .+++|++ +++....+...|..+|+.+++.+ ..+
T Consensus 100 -------ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~g~~~g~~~~~~l-----~~~-------- 158 (393)
T PRK09705 100 -------LLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPL-VMGLWSAALMGGGGLGAAITPWL-----VQH-------- 158 (393)
T ss_pred -------HHHHHHHHHhHHHHHhhhhhHHHHHHccccchh-HHHHHHHHHHHHHHHHHHHHHHH-----HHh--------
Confidence 223334444444433333222222 4456665 89998888888888888876542 110
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHH
Q 011056 206 DCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTAL 285 (494)
Q Consensus 206 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (494)
..+||+.+...++..++.....+...++.|+++ ++ + + .. ..+.+++ ++.+......++
T Consensus 159 -~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~-~------~~----~~~~l~~--~~~~~l~~~~~~ 216 (393)
T PRK09705 159 -SETWYQTLAWWALPAVVALFAWWWQSAREVASS-HK-------T-T------TT----PVRVVFT--PRAWTLGVYFGL 216 (393)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-cC-------C-C------cC----CcccccC--HhHHHHHHHHHH
Confidence 016888776655444333332222222222111 00 0 0 00 0122334 556666666656
Q ss_pred HHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Q 011056 286 TWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCF 365 (494)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 365 (494)
...++.....+.+.++.+ ++.+..+ .........++.++++++.+++.||+++|+....+..+..++.
T Consensus 217 ~~~~~~~~~~~lp~~l~~--~g~s~~~----------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 217 INGGYASLIAWLPAFYIE--IGASAQY----------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCChhh----------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 666666777788888853 3332211 1233445678889999999999999999999888877776766
Q ss_pred HHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHH
Q 011056 366 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVV 445 (494)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~ 445 (494)
.++... +. +.... ...+.|++.+...+.......+..+++ +++|+.+|+.+....+++.++
T Consensus 285 ~~~~~~--------------~~--~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~g 345 (393)
T PRK09705 285 CGFIWL--------------PL--QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP-AIAGKLVAFMQGIGFIIAGLA 345 (393)
T ss_pred HHHHHc--------------cc--hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 655433 11 11112 233456777766666666666666531 678999999999999999999
Q ss_pred hhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 011056 446 SMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQKP 490 (494)
Q Consensus 446 ~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 490 (494)
|.+.|++.|..| ++...|.+.++++++..+....+.+|++.++.
T Consensus 346 p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 346 PWFSGVLRSISG-NYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 999999999987 35666777777777777776777777765543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-28 Score=230.74 Aligned_cols=352 Identities=17% Similarity=0.115 Sum_probs=231.1
Q ss_pred HHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccC
Q 011056 50 QLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (494)
Q Consensus 50 ~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (494)
..++.|++.+++|+|+++.|++.+++.++..+++|+.|+++| |+||||.++. +.+..+++.+...+++++..+
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d----~~G~r~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 94 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLAD----KFGPRAVAML-GGILYGLGFTFYAIADSLAAL-- 94 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH----HcCccchhHH-hHHHHHHHHHHHHHHHHHHHH--
Confidence 445788889999999999999999999999999999999999 9999998776 566667777777788887321
Q ss_pred CCCCCcchHHHHHHHHHHhhc-cccccccc-cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccc
Q 011056 130 DRGDFRPRAIAVFVFGFWILD-VANNMTQG-KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDC 207 (494)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 207 (494)
.....+.+++.+... ........ .+++|++ +.+......++|..+++.+.+.. .. .
T Consensus 95 ------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~-----~~----------~ 152 (377)
T TIGR00890 95 ------YLTYGLASAGVGIAYGIALNTAVKWFPDKRGL-ASGIIIGGYGLGSFILSPLITSV-----IN----------L 152 (377)
T ss_pred ------HHHHHHHhHHHHHHHHhHHHHHHHHcCcccHH-HHHHHHHhcchhHhHHHHHHHHH-----Hh----------c
Confidence 111122222222211 11111111 3456766 89999888888887655443321 11 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 011056 208 ANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTW 287 (494)
Q Consensus 208 ~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (494)
.+||+.|++.+++.++..+..++..||+++++.+++ ++.+ +++ ++..+.+++ ++++......++..
T Consensus 153 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~---~~~~~~~~~--~~~~~~~~~~~~~~ 218 (377)
T TIGR00890 153 EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTN-------IEVS--VKD---YTVWEMLRT--PQFWVLYLSFFLNA 218 (377)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHheecCchhccccC-------cccc--hhh---hhHHHHHcC--ccHHHHHHHHHHHh
Confidence 279999999888777776666666666543221110 0000 011 123344555 66665555544444
Q ss_pred HHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Q 011056 288 LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLA 367 (494)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 367 (494)
........+.+.+.. + ++.+. ...........+...+++++.+++.||+|||+.+..+..+.+++.+.
T Consensus 219 ~~~~~~~~~~~~~~~-~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 286 (377)
T TIGR00890 219 VSGLLLIGLYKPYGQ-S-LGLSD----------GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAA 286 (377)
T ss_pred HHHHHHHHHHHHHHH-H-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 443333344444432 2 22111 11123344466778899999999999999999998888888777766
Q ss_pred HHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhh
Q 011056 368 MLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSM 447 (494)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~ 447 (494)
+.... .. ..........+.+++.+...+....++.|.+|+ +++|++.|+.+....+|+.++|.
T Consensus 287 ~~~~~--------------~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~~~~ 349 (377)
T TIGR00890 287 MLFIP--------------ML-NDVLFLATVALVFFTWGGTISLFPSLVSDIFGP--ANSAANYGFLYTAKAVAGIFGGL 349 (377)
T ss_pred HHHcc--------------cc-hhHHHHHHHHHHHHHhccchhccHHHHHHHhhh--hhhhhHhHHHHHHHHHHHHHHHH
Confidence 65542 11 122233445566777776666777888999998 89999999999999999999999
Q ss_pred hhhhhhhhcCCCCcchHHHHHHHHHHHH
Q 011056 448 GSGPWDQLFGGGNSPAFAVGGISALAGG 475 (494)
Q Consensus 448 ~~g~l~~~~g~~~~~~~~~~~~~~~i~~ 475 (494)
+.|.+.+..| +...|.+.+++.+++.
T Consensus 350 ~~g~l~~~~g--~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 350 IASHALTEIG--FEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHhhhc--hhhHHHHHHHHHHHhc
Confidence 9999999877 6667777766665543
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=224.16 Aligned_cols=379 Identities=14% Similarity=0.158 Sum_probs=245.0
Q ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHH
Q 011056 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (494)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~ 105 (494)
+.+.++.+.+++..++.++.+.....+++.|. +.+|+++.++|.+..+..+.+++.+|++|.++||+++|+||||++++
T Consensus 2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il 81 (473)
T PRK10429 2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL 81 (473)
T ss_pred CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence 34567788888888888887777777666655 66899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHH----HHHhhccccccccc----cccchhhHHhHHHHHHHHH
Q 011056 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVF----GFWILDVANNMTQG----KDHRRTRVANAYFSLFMAV 177 (494)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~~ 177 (494)
.+.+..+++..++...++... .....+..+..+ +..+....+....+ ++++|.+ ..++...+.++
T Consensus 82 ~g~i~~~i~~~llf~~p~~~~------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~-l~~~~~~~~~i 154 (473)
T PRK10429 82 IGTLANSVVLFLLFSAHLFEG------TAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQ-LVPYPRFFASL 154 (473)
T ss_pred hhhHHHHHHHHHHHcCCCCCc------cHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHH-HHHHHHHHHHH
Confidence 888888888766655443210 001112222211 11122333333333 5677776 78887777777
Q ss_pred HHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhh
Q 011056 178 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 257 (494)
Q Consensus 178 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 257 (494)
|..+.+.+.... +..... .....+|+....+.+++..+..++.++..||++..++.+. .++
T Consensus 155 g~~~~~~~~~~~-----~~~~g~---~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~-------~~~---- 215 (473)
T PRK10429 155 AGFVTAGFTLPF-----VNYVGG---GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVS-------AEG---- 215 (473)
T ss_pred HHHHHHHHHHHH-----HHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccc-------ccc----
Confidence 766655443210 111100 0111256777777777766666666666777643221110 000
Q ss_pred hhhHHHHHHH-HhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHH
Q 011056 258 HEAFLWELFG-TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGI 336 (494)
Q Consensus 258 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 336 (494)
++.+.++.++ .++| |.++.++...++.+.+......+...+.. ...+ +. ...........+..++
T Consensus 216 ~~~~~~~~~~~~~~n--~~~~~ll~~~~~~~~~~~~~~~~~~y~~~-y~~~-~~----------~~~~~~~~~~~i~~ii 281 (473)
T PRK10429 216 SHLTLKDIVALIYKN--DQLSCLLGMALAYNIASNIINGFAIYYFT-YVIG-DA----------DLFPYYLSYAGAANLV 281 (473)
T ss_pred cCCCHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHhhheeeEEE-EECC-CH----------HHHHHHHHHHHHHHHH
Confidence 1122444444 3455 77877777777666655555444443332 2111 00 1111223344567788
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhH
Q 011056 337 TSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 416 (494)
Q Consensus 337 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 416 (494)
+.++.+++.||+|+|+.+..+..+..++.+.+...... + ..+.+..++...+.+++.+...+..++++
T Consensus 282 ~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~i~~~l~g~~~~~~~~~~~am~ 349 (473)
T PRK10429 282 TLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA-----------A-PHNALLIVIAGILLNIGTALFWVLQVIMV 349 (473)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-----------C-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999988877666555554332100 1 11345556666778888888888889999
Q ss_pred hhhcccC-----CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 417 SIRTESL-----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 417 ~~~~~~~-----~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
+|..|.+ +|+.|..+|..+++.++++.+++.+.|.+.+..|
T Consensus 350 ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 350 ADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred hhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9997742 3667889999999999999999999999998776
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-26 Score=219.37 Aligned_cols=364 Identities=14% Similarity=0.084 Sum_probs=230.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHH
Q 011056 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (494)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~ 109 (494)
++.........+..........+.+|++.+++|.++++.|+..+++.++..+++|+.|+++| |+||||.++. +.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D----r~grr~~~~~-~~~ 93 (394)
T PRK10213 19 WSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQ----ATDRRYVVIL-FAV 93 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCcHHHHHH-HHH
Confidence 33334444333333233224445788999999999999999999999999999999999999 9999987766 555
Q ss_pred HHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhc
Q 011056 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATG 186 (494)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g 186 (494)
..+++.++..++++++.+ ...+.+.+++.+........... ++++|++ +.+......++|..+|+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~l--------~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~-a~~~~~~~~~~g~~ig~~l~ 164 (394)
T PRK10213 94 LLTLSCLLVSFANSFSLL--------LIGRACLGLALGGFWAMSASLTMRLVPPRTVPK-ALSVIFGAVSIALVIAAPLG 164 (394)
T ss_pred HHHHHHHHHHHHChHHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777221 12222223332222222222222 6677776 99999999999999999998
Q ss_pred ccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHH
Q 011056 187 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF 266 (494)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (494)
+.+ ... .+||+.|++.+++.+++.+......||+++++++ . .++.+
T Consensus 165 ~~l-----~~~----------~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~----------------~---~~~~~ 210 (394)
T PRK10213 165 SFL-----GEL----------IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH----------------Q---KQNTF 210 (394)
T ss_pred HHH-----Hhh----------cCHHHHHHHHHHHHHHHHHHHHHHCCCCCccccc----------------c---hhHHH
Confidence 763 111 1799999988776665554444445664321100 0 01223
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011056 267 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 346 (494)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d 346 (494)
+.+++ |.++......++...+......+.++++.++ ++.++. .........+++.+++.++.+++.|
T Consensus 211 ~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~----------~~g~~~~~~~~~~iig~~~~~~l~~ 277 (394)
T PRK10213 211 RLLQR--PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL-AGFGVD----------GLTLVLLSFGIASFVGTSLSSFILK 277 (394)
T ss_pred HHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChh----------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566 7777665555555544445555554444322 232221 1123344456778899999999999
Q ss_pred hhcchHHHHHHHHHHHHH-HHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCC
Q 011056 347 KWGAGFIWGISNILMALC-FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 425 (494)
Q Consensus 347 r~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 425 (494)
|.+ |+.+..+..+..++ +++..... +.+.......+.|++.+...+...+.+.+..|+
T Consensus 278 r~~-~~~l~~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--- 336 (394)
T PRK10213 278 RSV-KLALAGAPLVLAVSALVLTLWGS-----------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD--- 336 (394)
T ss_pred ccc-hhHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc---
Confidence 954 44444343433333 33322321 345556677788888888888778788888774
Q ss_pred CcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHH
Q 011056 426 GQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLI 477 (494)
Q Consensus 426 ~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~ 477 (494)
++++..+.......+|..+|+.++|.+.|..| +...+...+++.++..+.
T Consensus 337 ~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g--~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 337 QAEKAGSIQVAVIQLANTCGAAIGGYALDNIG--LTSPLMLSGTLMLLTALL 386 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hhhHHHHHHHHHHHHHHH
Confidence 46677777788889999999999999999876 555666655555444433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-27 Score=220.18 Aligned_cols=353 Identities=14% Similarity=0.111 Sum_probs=230.5
Q ss_pred HHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccc
Q 011056 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (494)
Q Consensus 44 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~ 123 (494)
+..+....+.+|.+.+|+|+|+.+.|++.+.+.+++.+++++.|+++| |+|||+.+ .........+......+++
T Consensus 4 ~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~D----r~grr~~~-~~~~~~~~~~~~~~~~~~~ 78 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLD----RAFKRWFL-FGSLATFAAAAGRLLDPFN 78 (368)
T ss_pred hHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccchHHH-HHHHHHHHHHHHHHHHhcc
Confidence 456667778899999999999999999999999999999999999999 99987754 4344444444333333355
Q ss_pred cccccCCCCCCcchHHHHHHHHHHhhccccccccc--cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcc
Q 011056 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG--KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 201 (494)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~ 201 (494)
+..+ ...+.+.+++.+........... ++++|++ +.++...+..+|..+++.++..+. .
T Consensus 79 ~~~l--------~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~-a~~~~~~~~~lG~~l~~~~~~~l~-----~----- 139 (368)
T TIGR00903 79 YEWL--------LACQLLAALGQPFLLNAFAPAASQIREERRDL-VISLLSFAMYLGIIFALAAGLKIY-----T----- 139 (368)
T ss_pred HHHH--------HHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-----H-----
Confidence 5211 12223333333221111111111 6777877 999999999999999998876631 1
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHH
Q 011056 202 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI 281 (494)
Q Consensus 202 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (494)
..+||+.|.+.+++.++..++.++.+||+|+++.++ . + .++..++.++.+++ |.+|.+.+
T Consensus 140 -----~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~-------~--~----~~~~~~~~~~ll~~--~~~~~~~~ 199 (368)
T TIGR00903 140 -----AGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEG-------F--G----FKDAVKEFGALAGR--KDLWIIGA 199 (368)
T ss_pred -----ccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-------c--c----hHHHHHHHHHHHcC--hhHHHHHH
Confidence 128999999988877777777777889987543211 0 0 00112345667777 88899988
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc---hHHHHH-H
Q 011056 282 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA---GFIWGI-S 357 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~---~~~~~~-~ 357 (494)
..++....++.+..|.|.++.+. + ++. ..+.. ..+. .+.+.+..+++.||..| |+.... .
T Consensus 200 ~~~~~~~~~~~~~~wlp~~L~~~--g--------~s~--~~~~~-~~l~---~~~g~~g~~~~~d~~~r~~~r~~~~~~~ 263 (368)
T TIGR00903 200 ILGFGVALFDNLAIWLEAALRPA--G--------LED--IAGDA-VALA---ILAGLIGVAVIPDRVARAGLRSIYIRAA 263 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--C--------CCh--HHHHH-HHHH---HHHHHHHHHHhhHHhhhhhhHHHHHHHH
Confidence 88888888888889999999532 2 111 11111 2222 22333334677777654 333332 3
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHH
Q 011056 358 NILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLA 437 (494)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 437 (494)
..+.++.+..+.... +....+....+.+++.....+..+++.+|.+|+ +.||++.|+.+..
T Consensus 264 ~~~~a~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--~~rgt~~G~~~~~ 324 (368)
T TIGR00903 264 ALLIAAFFLALAFEL-----------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK--ELHGKAAGAIGFT 324 (368)
T ss_pred HHHHHHHHHHHHHcc-----------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch--hhcCcccchhhHH
Confidence 333333333333221 122334445555666666666677889999999 9999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHh
Q 011056 438 IVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 438 ~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
..+++..+|.+.+.+.. + ....|.+.++..+++.+..+
T Consensus 325 g~~~~~~~~~~~~~~~~--~--~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 325 SRAISVALALAAMLFIS--S--AEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHHHHHHhc--C--HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988773 3 45567777777777776654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=220.52 Aligned_cols=356 Identities=12% Similarity=0.098 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhh
Q 011056 42 GIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (494)
Q Consensus 42 ~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~ 120 (494)
...++.....+.+|.+. +++|.|+.+.|++.+++.+...+.+|+.|+++| |+||||.++..+.+..+++.++.++
T Consensus 8 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D----r~g~r~~~~~~~~~~~~~~~~~~~~ 83 (375)
T TIGR00899 8 LTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSD----YQGDRKGLILFCCLLAALACLLFAW 83 (375)
T ss_pred HHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHHHHHHHh
Confidence 33455666677888765 679999999999999999999999999999999 9999998777666666666666667
Q ss_pred ccccccccCCCCCCcchHHHHHHHHHHhhcccccc-ccc------cccchhhH-HhHHHHHHHHHHHHHHhhhccccccc
Q 011056 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNM-TQG------KDHRRTRV-ANAYFSLFMAVGNILGYATGSFSGWF 192 (494)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~r~~~-~~~~~~~~~~~g~~~g~~~g~~~~~~ 192 (494)
++++. ...+.+...+........ ... ++++|.+. ..+......++|..+|+.+++.+
T Consensus 84 ~~~~~------------~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l--- 148 (375)
T TIGR00899 84 NRNYF------------LLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWL--- 148 (375)
T ss_pred cchHH------------HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHH---
Confidence 77762 222222222222111111 111 22333220 14667777889999999887752
Q ss_pred ccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhc
Q 011056 193 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYF 272 (494)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (494)
... .+||+.|++.++..++..++.++.+||+|++++++. + +. +..+.+++
T Consensus 149 --~~~----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~---~~~~~~~~- 198 (375)
T TIGR00899 149 --ALG----------FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL--------T------RL---EVRGLLAS- 198 (375)
T ss_pred --HHh----------cccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc--------C------cc---hhhhhhcC-
Confidence 111 179999999888777666666666787654322110 0 00 11122334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Q 011056 273 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF 352 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~ 352 (494)
++++......++.+........+.+.++.++ ++.++.+ .+ ...........++.++.+++.||+|+|+
T Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~---------~g-~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 266 (375)
T TIGR00899 199 -RDTRLLFVACTLMWGCNILYIINMPLLIIHE-LGLPDKL---------AG-LMMGTAAGLEIPFMLLAGYLIKRFGKRR 266 (375)
T ss_pred -cchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-cCCCHHH---------HH-HHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence 4555444444444443334444556666432 3322211 11 2223334456777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhh
Q 011056 353 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 432 (494)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 432 (494)
.+..+.++..+.+......+ +.+.......+.|++.+...+.......|..|+ +++++.|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~---~~~~~~~ 326 (375)
T TIGR00899 267 LMLLAALAGVAFYTGLAADN-----------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG---RAGAATT 326 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc---hhhHHHH
Confidence 88777666555544433332 344455566677787777777777888888774 4579999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 433 VLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 433 ~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
+.+....+|..++|.+.|.+.+..| +...+.+.+++.+++.++..+
T Consensus 327 ~~~~~~~~g~~~g~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 327 LYTNTGRVGWIIAGSVGGILAERWS--YHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999876 677788877777777666543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-26 Score=221.32 Aligned_cols=368 Identities=14% Similarity=0.162 Sum_probs=235.7
Q ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHhHHH-HHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHH
Q 011056 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTP-YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (494)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~ 105 (494)
+.+.++.+.++...++.++.+.....++.. |.+.+|+++..+|.+..+..+.+++.+|+.|.++||+++|+||||++++
T Consensus 5 ~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il 84 (460)
T PRK11462 5 VLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVL 84 (460)
T ss_pred cccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHh
Confidence 567788888888888777766666665554 5577999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHH----HHHHhhccccccccc----cccchhhHHhHHHHHHHHH
Q 011056 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFV----FGFWILDVANNMTQG----KDHRRTRVANAYFSLFMAV 177 (494)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~~ 177 (494)
.+.+..+++..+++..++... .....+..+.. ++..+....+....+ ++++|.+ ..++...+..+
T Consensus 85 ~g~i~~~i~~~llf~~p~~s~------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~-l~s~r~~~~~i 157 (460)
T PRK11462 85 FGALPFGIVCVLAYSTPDLSM------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRIS-LQSWRFVLATA 157 (460)
T ss_pred HHHHHHHHHHHHHHhCCCCCc------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHH-HHHHHHHHHHH
Confidence 888888878777765554310 11112222222 222223343333333 5677777 88988888888
Q ss_pred HHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhh
Q 011056 178 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 257 (494)
Q Consensus 178 g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 257 (494)
|..+++.+...+ ..+.. +++...+|+....+.+++.+++..+.+...||+++.+++
T Consensus 158 G~~~~~~~~~pl-----v~~~g---~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~---------------- 213 (460)
T PRK11462 158 GGMLSTVLMMPL-----VNLIG---GDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT---------------- 213 (460)
T ss_pred HHHHHHHHHHHH-----HHHhC---CCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCcc----------------
Confidence 887776663221 11111 111123577766666666666666666666775422110
Q ss_pred hhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---HHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHH
Q 011056 258 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFP---FLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 334 (494)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (494)
+.+..+++...++| |.++.++...++...+... ...|+..|. ++.. ......+....+.+
T Consensus 214 ~~~~~~~l~~~~~N--k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~----~g~~-----------~~~~~~l~~~~i~~ 276 (460)
T PRK11462 214 TTSMREDLRDIWQN--DQWRIVGLLTIFNILAVCVRGGAMMYYVTWI----LGTP-----------EVFVAFLTTYCVGN 276 (460)
T ss_pred CCCHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh----cCCh-----------HHHHHHHHHHHHHH
Confidence 01122344555666 6776666555554443222 233333332 2110 01112234456778
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhh
Q 011056 335 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 414 (494)
Q Consensus 335 ~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 414 (494)
+++.++.+++.||+++|+.+..+..+..+..+++.+. +.. +.....+..++.|++.+...+..++
T Consensus 277 iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 277 LIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV--------------PMQ-ASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--------------chh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999988765554444433333333 211 2223344455667777777777788
Q ss_pred hHhhhcccC-----CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 415 LVSIRTESL-----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 415 ~~~~~~~~~-----~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
++.|..+.+ +|+.|..++..+...++|+++++.+.|.+++..|
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888887742 3667888888899999999999999999998765
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=226.80 Aligned_cols=385 Identities=9% Similarity=-0.050 Sum_probs=232.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHH
Q 011056 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (494)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~ 109 (494)
++.++..........++........|.+.+++|+|..+.|++.+++.++..+++++.|+++| |+||||.++. +.+
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~G~r~~~~~-~~~ 81 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA----IIGARRWIAG-IMV 81 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH----HhChHHHHHH-HHH
Confidence 33333344433333344555555677788999999999999999999999999999999999 9999997655 677
Q ss_pred HHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhc
Q 011056 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATG 186 (494)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g 186 (494)
+..++.++.++++|++.+ ...+.+.+++.+........... ++++|++ +.++.....++|..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~l--------~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~-~~~~~~~~~~~g~~~~~~~~ 152 (412)
T TIGR02332 82 LWGIASTATMFATGPESL--------YLLRILVGIAEAGFLPGILLYLTFWFPAYFRAR-ANALFMIAMPVTMALGLILS 152 (412)
T ss_pred HHHHHHHHHHHhcCHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 777777777788887322 12223333333332221111112 6667777 99999999999999999987
Q ss_pred ccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCC---CCCCCC-------Cc-cccccch
Q 011056 187 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH---DQSAPF-------SE-EGHEQSS 255 (494)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~-------~~-~~~~~~~ 255 (494)
+.+. .. .......+||+.|++.++..++..++.++++||+|++.. +++++. ++ +.++.++
T Consensus 153 ~~l~-----~~----~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 223 (412)
T TIGR02332 153 GYIL-----AL----DGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEG 223 (412)
T ss_pred HHHH-----hC----CCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccccccccc
Confidence 6521 00 000001279999999887777666667777889875421 100000 00 0000000
Q ss_pred --hhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHH
Q 011056 256 --DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 333 (494)
Q Consensus 256 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (494)
...+...++.++.+++ +.+|...+..++.......+..|.|.++.+...+.+.. ..+ .......+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~---------~~~-~~~~~~~l~ 291 (412)
T TIGR02332 224 AFAHAAMPQRSMLREIFT--PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNI---------MIG-LLAAIPQFC 291 (412)
T ss_pred ccccccccHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH---------HhH-HHhhHHHHH
Confidence 0000111122333344 66777777777777777778888999885421111111 112 224445677
Q ss_pred HHHHHHHHHHHHhhhcchHHH-HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhch
Q 011056 334 LGITSVLMEKLCRKWGAGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 412 (494)
Q Consensus 334 ~~i~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 412 (494)
.+++.++.++++||+++|+.. .....+..++++ +.... + +.........+.+++.....+..
T Consensus 292 ~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~-~~~~~-------------~---~~~~~~~~~~~~~~g~~~~~~~~ 354 (412)
T TIGR02332 292 TIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWL-LASAT-------------D---HNLIQLLGIIMASMGSFSAMAIF 354 (412)
T ss_pred HHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHH-HHHhc-------------C---CHHHHHHHHHHHHHHhhhhhhHH
Confidence 889999999999999977753 333333333332 22211 1 11111222222333332222333
Q ss_pred hhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHH
Q 011056 413 YALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 469 (494)
Q Consensus 413 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~ 469 (494)
.....|..|+ +++|+++|+.+....+|++++|.+.|.+.|..| ++...+.+.++
T Consensus 355 ~~~~~~~~~~--~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g-~~~~~~~~~~~ 408 (412)
T TIGR02332 355 WTTPDQSISL--QARAIAIAVINATGNIGSALSPFLIGILKDATG-SFNSGLWFVAA 408 (412)
T ss_pred Hhhcccccch--HHHHHHHHHHHHhhhhhhhhhhhhcccccccCC-CCchhHHHHHH
Confidence 3444566777 899999999999999999999999999999875 35556555444
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=229.07 Aligned_cols=364 Identities=23% Similarity=0.314 Sum_probs=255.0
Q ss_pred HHHhhhHHHHHHHHHHHh-HHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHH
Q 011056 36 VASVAGGIQFGWALQLSL-LTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (494)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~-l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~ 114 (494)
++...++.++.+.....+ .+.+.+.+|+++..+|.+..+..+.+++.+|+.|.++||+++|+||||++++.+.+..+++
T Consensus 6 y~~g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~ 85 (428)
T PF13347_consen 6 YGIGDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALS 85 (428)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHH
Confidence 344445555555544444 4555677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc-c-ccccccCCCCCCcchHHHHHHHHHH----hhccccccccc----cccchhhHHhHHHHHHHHHHHHHHhh
Q 011056 115 VLLIGLS-A-DIGWLLGDRGDFRPRAIAVFVFGFW----ILDVANNMTQG----KDHRRTRVANAYFSLFMAVGNILGYA 184 (494)
Q Consensus 115 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~~g~~~g~~ 184 (494)
..+++.. + +... .....+..+..+.+. .....+....+ ++++|.+ ..+....+..+|..+...
T Consensus 86 ~~llf~~~p~~~~~------~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~-l~~~~~~~~~~g~~l~~~ 158 (428)
T PF13347_consen 86 FFLLFSPPPAGLSF------TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTR-LSSWRMIFSMIGSLLASF 158 (428)
T ss_pred HHHhhccccchhhh------hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhh-HHHHHHHHHHHHHHHHHH
Confidence 8888665 3 2210 011111111111111 12333333333 4567776 888888888888876655
Q ss_pred hcccccccccchhhhcccccccc-cchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHH
Q 011056 185 TGSFSGWFKILPFTLTSACNVDC-ANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 263 (494)
Q Consensus 185 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (494)
+...+ ..+. ++... .+|++...+.+++.++..++..+..||++++.+++ +++.+..+
T Consensus 159 ~~~~l-----~~~~----g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~-------------~~~~~~~~ 216 (428)
T PF13347_consen 159 LAPIL-----VSWF----GGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQ-------------EKKISLRD 216 (428)
T ss_pred Hhhhh-----hhhh----ccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccc-------------cccccccc
Confidence 54431 1111 11111 27899999999988888888888888822211111 00112223
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 011056 264 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 343 (494)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 343 (494)
++++.++| |+++.++...++.+.+......+.+.|. +...+.+. ..........+..+++.++.++
T Consensus 217 ~~~~~~~n--r~~~~l~~~~~~~~~~~~~~~~~~~y~~-~~vl~~~~-----------~~~~~~~~~~~~~~v~~~~~~~ 282 (428)
T PF13347_consen 217 SLRSLFRN--RPFRILLLAFFLQWLAFALMNTFLPYYF-TYVLGNEG-----------LISIFMLIFFVASIVGSPLWGR 282 (428)
T ss_pred chhhhccc--chHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHhcCch-----------hhHHHHHHHHHHHHHHHHHHHH
Confidence 44555566 7788888888887777666555444444 33333221 1112233456778899999999
Q ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccC
Q 011056 344 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 423 (494)
Q Consensus 344 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 423 (494)
++||+|+|+.+..+..+.+++.+++.+.. ++ +.+..++...+.|++.+.....++++.+|..+.+
T Consensus 283 l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~ 347 (428)
T PF13347_consen 283 LSKRFGKKKVYIIGLLLAALGFLLLFFLG-------------PG--SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYD 347 (428)
T ss_pred HHHHccceeehhhhHHHHHHHHHHHHHHH-------------hh--hHHHHHHHHHHhHhhhcccccccccccccchhhH
Confidence 99999999999999999999888887773 11 5778888899999999999999999999998853
Q ss_pred -----CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 424 -----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 424 -----~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
+|+.|..+|+.+...++++.+++.+.|.+.+..|
T Consensus 348 e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 348 EWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred HHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 3667999999999999999999999999998876
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=220.18 Aligned_cols=366 Identities=16% Similarity=0.120 Sum_probs=229.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHH
Q 011056 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (494)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~ 112 (494)
++.+....+..........+.+|.+.+++|.|.++.|++.++..++..+++++.|+++| |+||||.+.. +.+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~ 79 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSS----RYSLKHILLF-LVALCV 79 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHc----cCccHHHHHH-HHHHHH
Confidence 44445555555555556667899999999999999999999999999999999999999 9999886665 666777
Q ss_pred HHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccc
Q 011056 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFS 189 (494)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~ 189 (494)
++.++..++++++.+ .....+.+++.+........... ++++|++ +.+....+..+|..+|+.+++.+
T Consensus 80 ~~~~l~~~~~~~~~l--------~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~l~~~l 150 (382)
T PRK10091 80 IGNAMFTLSSSYLML--------AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTA-AVAGMVSGMTVANLLGIPLGTYL 150 (382)
T ss_pred HHHHHHHHhCcHHHH--------HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhH-HHHHHHHHHHHHHHHhccHHHHH
Confidence 788888888887321 12222222222222111112222 4555665 88888888899999998887652
Q ss_pred cccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHh
Q 011056 190 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTF 269 (494)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (494)
. . ..+||+.|.+.+++.++..+...+..||.+++++. + . ++..+.+
T Consensus 151 ~-----~----------~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~----------~-----~----~~~~~~~ 196 (382)
T PRK10091 151 S-----Q----------EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG----------G-----L----REQFHFL 196 (382)
T ss_pred h-----h----------hccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc----------C-----H----HHHHHHh
Confidence 1 1 01799999998887766666555667775321100 0 1 1112344
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011056 270 RYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 349 (494)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g 349 (494)
++ ++.+......++...+......|.++++.+. ++.++ ...........+..+++.++.+++.||+|
T Consensus 197 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~----------~~~~~~~~~~~~~~~ig~~~~g~l~~r~~ 263 (382)
T PRK10091 197 RS--PAPWLIFAATMFGNAGVFAWFSYIKPYMMFI-SGFSE----------TSMTFIMMLVGLGMVLGNLLSGRLSGRYS 263 (382)
T ss_pred cC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHhHHHheeccccC
Confidence 55 5555554444444444444455566666432 22222 11223344567778999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhh-hHhhhcccCCCCcc
Q 011056 350 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA-LVSIRTESLGLGQG 428 (494)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g 428 (494)
+|+....+..+.+++.+++.... + +.+...+...+.+++.....+.... ...+..++ +.++
T Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~-------------~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~ 325 (382)
T PRK10091 264 PLRIAAVTDFIIVLALLMLFFFG-------------G---MKTASLIFAFICCAGLFALSAPLQILLLQNAKGG--ELLG 325 (382)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-------------h---hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc--hHHH
Confidence 99998888877777766554432 1 2233344444555554433332232 33333333 4444
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 429 LSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 429 ~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
.. ..+....+|+++||.+.|.+.|..+ ++...+.+.++++++.......
T Consensus 326 ~~--~~~~~~~~g~~~Gp~~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 326 AA--GGQIAFNLGSAIGAYCGGMMLTLGL-AYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HH--HHHHHHHHHHHHHHHHhHHHHHccc-CcchHHHHHHHHHHHHHHHHHH
Confidence 43 3467789999999999999999753 3666676666555555444333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=226.95 Aligned_cols=369 Identities=12% Similarity=0.056 Sum_probs=217.3
Q ss_pred HhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCC
Q 011056 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (494)
Q Consensus 52 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (494)
..+|.+.++ |+|+.+.+++.++..++..+++++.|+++| |+||||.++. +.++.+++.+++.+.+..
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~D----r~g~k~~l~~-~~~~~~i~~~~~~~~~~~------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAAVMLFMGFVPWA------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhh----ccCCchhHHH-HHHHHHHHHHHHHhhhcc-------
Confidence 456766677 999999999999999999999999999999 9999986665 555666666666554311
Q ss_pred CCCcchHHHHHHHHHHhhc----cccccccc---cccchhhHHhHHHHHHHHHHHH-HHhhhcccccccccchhhhcccc
Q 011056 132 GDFRPRAIAVFVFGFWILD----VANNMTQG---KDHRRTRVANAYFSLFMAVGNI-LGYATGSFSGWFKILPFTLTSAC 203 (494)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~-~g~~~g~~~~~~~~~~~~~~~~~ 203 (494)
..............++.. ........ ++++|++ +.++...+.++|.. .+++++.... +
T Consensus 117 -~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~l~~~~~~------~------ 182 (452)
T PRK11273 117 -TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG-IVSVWNCAHNVGGGLPPLLFLLGMA------W------ 182 (452)
T ss_pred -cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHH------H------
Confidence 000111122222222211 11111111 5666776 88988888888764 4444322110 0
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC---CccccccchhhhhhHHHHH-H-HHhhhchHHHHH
Q 011056 204 NVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF---SEEGHEQSSDVHEAFLWEL-F-GTFRYFSGTIWI 278 (494)
Q Consensus 204 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 278 (494)
..+||+.|++.+++.++..++..+++||+|+....+++.+ +.+++.+.++.++.+.++. . ..+++ +.+|.
T Consensus 183 ---~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 257 (452)
T PRK11273 183 ---FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPN--KLLWY 257 (452)
T ss_pred ---hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcC--hHHHH
Confidence 0279999999887777766666677788765321110000 0000000000011112222 1 24455 77888
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh--cchHHH-H
Q 011056 279 ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW--GAGFIW-G 355 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--g~~~~~-~ 355 (494)
..+..++.+...+....|.|.|+.++ ++.+.. ..........+..+++.++.|+++||+ +||+.. .
T Consensus 258 ~~l~~~~~~~~~~~~~~~~P~~l~~~-~g~s~~----------~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~ 326 (452)
T PRK11273 258 IAIANVFVYLLRYGILDWSPTYLKEV-KHFALD----------KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV 326 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHH
Confidence 77777777766667777889988643 222211 112223445667788999999999999 444432 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHH
Q 011056 356 ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLN 435 (494)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 435 (494)
....+..++.+.+... +.. +.+...+...+.|...............|.+|+ +.+|+++|+.+
T Consensus 327 ~~~~l~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~ 389 (452)
T PRK11273 327 FFMTLVTIATIVYWLN--------------PAG-NPTVDMACMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTG 389 (452)
T ss_pred HHHHHHHHHHHHHHHh--------------ccc-ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh--hhhhhHHHHHH
Confidence 2223333333322221 110 222223333334433222222334456788998 89999999999
Q ss_pred HHHHHHHHH-HhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcc
Q 011056 436 LAIVIPQIV-VSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 482 (494)
Q Consensus 436 ~~~~~g~~l-~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (494)
....+++.+ +|.+.|.+.|..| +...|.+.+++++++.+......
T Consensus 390 ~~~~~g~~~~g~~v~g~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 390 LFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHh
Confidence 988888765 7999999999987 77788777777777766655433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-26 Score=215.25 Aligned_cols=387 Identities=14% Similarity=0.108 Sum_probs=248.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhHHHHHH-HhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHH
Q 011056 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (494)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~ 109 (494)
+.++.....+......+....+..+.+.+ ++|+|++|.+++.+++.+.+++++++.|++.| |+|.||.+.. +.+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~D----r~G~R~v~~~-~~l 108 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVP----IFGGRRWTVF-STA 108 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHH-HHH
Confidence 44444333333333466666667777765 79999999999999999999999999999999 9999997766 555
Q ss_pred HHHHHHHHHhhc-----cccccccCCCCCCcchHHHHHHHHHHhhccccccccc------cccchhhHHhHHHHHHHHHH
Q 011056 110 SIAVAVLLIGLS-----ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG------KDHRRTRVANAYFSLFMAVG 178 (494)
Q Consensus 110 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~~g 178 (494)
...+..+..+++ +++ ..+.+.....++.......... ++++|++ +.|+.....++|
T Consensus 109 l~~i~~~~~~~a~~~~~~s~------------~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~-A~Gi~~g~G~~G 175 (462)
T PRK15034 109 ILIIPCVWLGIAVQNPNTPF------------GIFIVIALLCGFAGANFASSMGNISFFFPKAKQGS-ALGINGGLGNLG 175 (462)
T ss_pred HHHHHHHHHHHHHcccCCCH------------HHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHH-HHHHHHHHHhhH
Confidence 566677777665 455 2222333222222111111111 6677877 999997666777
Q ss_pred HHHHhhhccccc---ccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccch
Q 011056 179 NILGYATGSFSG---WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 255 (494)
Q Consensus 179 ~~~g~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 255 (494)
..+++.++..+. +...+++...........+|+..+++..++.++..++.++..+|.+..
T Consensus 176 ~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~----------------- 238 (462)
T PRK15034 176 VSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS----------------- 238 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-----------------
Confidence 766555543210 000111110000000122578888887777776666666665553321
Q ss_pred hhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHH
Q 011056 256 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 335 (494)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (494)
+...++.++.+|+ |+.|.+++.+++.+.++..+..++|.+..+ .+. .. .. .....+..+...
T Consensus 239 ---~~~~~~~~~vlk~--~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~----------~~-~~-l~~~~l~~l~~~ 300 (462)
T PRK15034 239 ---RASIADQLPVLQR--LHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFP----------DV-NI-LRLAFFGPFIGA 300 (462)
T ss_pred ---ccCHHHHHHHhCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC----------hH-HH-HHHHHHHHHHHH
Confidence 1124567778888 889999999999888888887788887753 221 00 01 111233456788
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCC--chHHHHHHHHHHHhhHhhhhhhchh
Q 011056 336 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPN--GIVIAALIIFTILGGPLAITYSVPY 413 (494)
Q Consensus 336 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~ 413 (494)
+..++.|+++||+|+++++.++.+.+.++........ |.. .+.+...+.++...++.|......+
T Consensus 301 l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l-------------p~~~~~~~~~~~~~~~~l~~~~G~gngsvf 367 (462)
T PRK15034 301 IARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL-------------PGTGSGNFIAFYAVFMGLFLTAGLGSGSTF 367 (462)
T ss_pred HHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh-------------ccccccHHHHHHHHHHHHHHHhcccchHHH
Confidence 8899999999999999999888877766664433332 211 1344444444444445555555556
Q ss_pred hhHhhhccc------C-------------CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHH
Q 011056 414 ALVSIRTES------L-------------GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAG 474 (494)
Q Consensus 414 ~~~~~~~~~------~-------------~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~ 474 (494)
.++.+.+|+ + +++.|.+.|+.+....+|+++-|.+.|...+..| .+...|....+..+++
T Consensus 368 k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g-~~~~~~~~~~~~~~~~ 446 (462)
T PRK15034 368 QMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG-SPVGAMKVFLIFYIVC 446 (462)
T ss_pred HhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-CcHHHHHHHHHHHHHH
Confidence 666666663 0 1257889999999999999999999999999887 4666788888888888
Q ss_pred HHHHhhcccC
Q 011056 475 GLIAILAIPR 484 (494)
Q Consensus 475 ~~~~~~~~~~ 484 (494)
.++.++..-+
T Consensus 447 ~~~~w~~y~r 456 (462)
T PRK15034 447 VLLTWLVYGR 456 (462)
T ss_pred HHHHHHHhcc
Confidence 8887765443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-27 Score=226.37 Aligned_cols=374 Identities=16% Similarity=0.059 Sum_probs=236.0
Q ss_pred HHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 011056 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (494)
Q Consensus 47 ~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~ 126 (494)
........|.+.+++|.|+.+.+++.+++.++..+++++.|+++| |+||||.++. +.+...++..+.++++++..
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLD----RFGARKTLAV-FIVIWGVFTGLQAFAGAYVS 84 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHH----hcCcceeeHH-HHHHHHHHHHHHHHHcCHHH
Confidence 344445677788999999999999999999999999999999999 9999997766 56666667777777777621
Q ss_pred ccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccc
Q 011056 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSAC 203 (494)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~ 203 (494)
......+.+++.+........... ++++|++ ..++.....++|..+++.+++.+ ..
T Consensus 85 --------~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~l-----~~------- 143 (399)
T TIGR00893 85 --------LYILRVLLGAAEAPFFPGIILIVASWFPASERAT-AVSIFNSAQGLGGIIGGPLVGWI-----LI------- 143 (399)
T ss_pred --------HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHH-HHHHHHHhchHHHHHHHHHHHHH-----HH-------
Confidence 112222333333222222222222 5677776 99999999999999999887652 11
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCc---cc---cccchhhhhhHHHHHHHHhhhchHHHH
Q 011056 204 NVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE---EG---HEQSSDVHEAFLWELFGTFRYFSGTIW 277 (494)
Q Consensus 204 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (494)
..+||+.|.+.++..++..++.++..||++++++...+++++ ++ +.+++++++...++.++.+++ |+++
T Consensus 144 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 218 (399)
T TIGR00893 144 ---HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKD--RRVW 218 (399)
T ss_pred ---hCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcC--HHHH
Confidence 016899999888777776666666677765432211110000 00 000001111122334555666 7788
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH-HH
Q 011056 278 IILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW-GI 356 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~-~~ 356 (494)
..++..++..........+.+.++.+. ++.+.. ..........+..+++.++.+++.||++||+.. ..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 287 (399)
T TIGR00893 219 GLALGQFLVNIGLGFFLTWFPTYLVQE-RGLSIL----------EAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVF 287 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-hcccHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 877777777777777777788877543 222111 112334445677889999999999999998621 11
Q ss_pred HHHHHHHH---HHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 357 SNILMALC---FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 357 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
......++ ........ ......+.......+.+++.+ ..+..+++..|.+|+ +++|+++|+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~g~~~~~ 351 (399)
T TIGR00893 288 ARKTAIIAGLVLSLLMFAT-------------NYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPG--NIAGLTGGL 351 (399)
T ss_pred HHHHHHHHHHHHHHHHHHh-------------ccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh--hHHHHHHHH
Confidence 11111111 11111110 000022333333333333333 567888999999998 999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHh
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
.+.+..++..++|.+.|.+.|..| ++...+.+.+++.+++.+..+
T Consensus 352 ~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 352 INSLGNLGGIVGPIVIGAIAATTG-SFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHhhhhhhHHhhhhccCCC-chhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999765 245567677766666655544
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=226.62 Aligned_cols=365 Identities=14% Similarity=0.069 Sum_probs=248.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHH
Q 011056 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (494)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~ 111 (494)
.+..++...+...++..+....+|.+.+++|.+.++.+|+.+.+.++..+++++.|+++| |+||||.++. +.+..
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D----~~Grk~~l~~-~~~~~ 81 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD----RIGFKRLLML-GGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHH-HHHHH
Confidence 344455566666677777888899999999999999999999999999999999999999 9999887766 77777
Q ss_pred HHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhcccccccc-c---cccchhhHHhHHHHHHHHHHHHHHhhhcc
Q 011056 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQ-G---KDHRRTRVANAYFSLFMAVGNILGYATGS 187 (494)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~ 187 (494)
.++.+.+++++|++.+ .....+.+++.+.......... . ++++|++ +.++.....++|..+||.+++
T Consensus 82 ~~~~~~~~~a~~~~~l--------i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~-~~g~~~~~~~~g~~~gp~lgg 152 (495)
T PRK14995 82 GLASLAAAFSPTASWL--------IATRALLAIGAAMIVPATLAGIRATFTEEKQRNM-ALGVWAAVGSGGAAFGPLVGG 152 (495)
T ss_pred HHHHHHHHHcCCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888887322 2222333333333222211111 1 4567776 999999999999999999988
Q ss_pred cccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCc--------------ccccc
Q 011056 188 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE--------------EGHEQ 253 (494)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--------------~~~~~ 253 (494)
.+ ... .+|||.|++...+.++..++..+.+||+++++.++.+.... ++..+
T Consensus 153 ~l-----~~~----------~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~ 217 (495)
T PRK14995 153 IL-----LEH----------FYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALK 217 (495)
T ss_pred Hh-----hcc----------CChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccc
Confidence 73 111 17999999988777777666667777765332211110000 00000
Q ss_pred chhhhhh---------------HHHHH--------HHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCC
Q 011056 254 SSDVHEA---------------FLWEL--------FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEP 310 (494)
Q Consensus 254 ~~~~~~~---------------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (494)
....... ..+|. .+.+|+ |.++...+..++...+......+.+.|++ ..++.++
T Consensus 218 ~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lq-~v~g~s~ 294 (495)
T PRK14995 218 GFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTH--RIILSGVVMAMTAMITLVGFELLMAQELQ-FVHGLSP 294 (495)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCH
Confidence 0000000 00011 234455 55666656666666666666667777774 3333332
Q ss_pred CCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCch
Q 011056 311 NEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGI 390 (494)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (494)
. ...+.+....+...+++++.|++.||+|+|+.+..+.++.+++...+.... .. .+
T Consensus 295 ~----------~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~-------------~~-~~ 350 (495)
T PRK14995 295 L----------EAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD-------------FS-TQ 350 (495)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc-------------CC-Cc
Confidence 1 122444556777889999999999999999988888888777776655442 11 12
Q ss_pred HHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011056 391 VIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 454 (494)
Q Consensus 391 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~ 454 (494)
.+......++.|++.+...+.....+.+..|+ +++|.+.++.++...+|+.+|+.+.|.+.+
T Consensus 351 ~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 351 QWQAWGLMALLGFSAASALLASTSAIMAAAPP--EKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH--HhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788999988887778888888888 899999999999999999999999999875
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-26 Score=218.28 Aligned_cols=363 Identities=10% Similarity=0.068 Sum_probs=233.5
Q ss_pred HHHHhhhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHH
Q 011056 35 KVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (494)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~ 113 (494)
.+....+...+++....++++.+. +++|+|..++|++.+++.+.+.+.+++.|+++| |+||||.+++ +.+...+
T Consensus 11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~k~~~~~-~~~~~~~ 85 (395)
T PRK10054 11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILAD----KFDKKRYMLL-AITAFAS 85 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCcchhHHH-HHHHHHH
Confidence 333344445566777777787776 679999999999999999999999999999999 9999887665 5566666
Q ss_pred HHHHHhhccccccccCCCCCCcchHHHHHHHHHHh----hccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhc
Q 011056 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWI----LDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATG 186 (494)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g 186 (494)
+.+...++++++ ...+.....+. .......... ++++|++ +.++.....++|..+|+.++
T Consensus 86 ~~~~~~~~~~~~------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~lg~~igp~l~ 152 (395)
T PRK10054 86 GFIAIPLVNNVT------------LVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTK-IFSLNYTMLNIGWTVGPPLG 152 (395)
T ss_pred HHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 777777777652 11111111111 1111122212 4556666 89999999999999999998
Q ss_pred ccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHH
Q 011056 187 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF 266 (494)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (494)
+++. . .+|+..|.+.++..++..++..+..||++++++++ + + + .++..
T Consensus 153 ~~l~-----~-----------~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-------~-~-----~---~~~~~ 200 (395)
T PRK10054 153 TLLV-----M-----------QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-------T-G-----S---VWSPS 200 (395)
T ss_pred HHHH-----H-----------hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-------h-h-----h---hhhhh
Confidence 7631 1 16888898887766666555555555543221110 0 0 0 01223
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011056 267 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 346 (494)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d 346 (494)
+.+++ |+++...+..++..........+.+.++.. ..+ .+.+...........++......+..+++.|
T Consensus 201 ~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 269 (395)
T PRK10054 201 VLLQD--KALLWFTCSGFLASFVSGAFASCISQYVMV-VAD--------SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLN 269 (395)
T ss_pred hhccC--ceehHHHHHHHHHHHHHHHhhhhHHHHHHH-hcc--------cchHHHHHHHHHHhhhhheeeehhHHHHHHc
Confidence 44556 677766666655554444443444544421 111 0111111112233344555566778899999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCC
Q 011056 347 KWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 426 (494)
Q Consensus 347 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 426 (494)
|.++|+.+..+..+..++...+.+.. + +.+...+...+.+++.+...+...+.+.+..|+ +.
T Consensus 270 ~~~~~~~l~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~--~~ 331 (395)
T PRK10054 270 AANIRPLMTAGTLCFVIGLVGFIFSG--------------N--SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP--GM 331 (395)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHcc--------------h--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc--cc
Confidence 99999998888877777776655431 0 344555667788888887777778888999998 88
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHh
Q 011056 427 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 427 ~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
+|++++..+ ...+|..+||.++|.+.|+.| +...+.+.+.+..++.++..
T Consensus 332 ~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 332 KASYFSAQS-LGWLGAAINPLVSGVILTTLP--PWSLFVILALAIVAAWLLML 381 (395)
T ss_pred ceehHhHHH-HHHHHHHHHHHHHHHHHHHcC--hhhHHHHHHHHHHHHHHHHH
Confidence 899988765 567899999999999999987 55566665555444444433
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-25 Score=221.71 Aligned_cols=368 Identities=15% Similarity=0.100 Sum_probs=237.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHH
Q 011056 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (494)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~ 109 (494)
++..+.+....+...+......+.+|.+.+++|.|+.+.+++.+.+.++..++.++.|+++| |+||||.++. +.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~-~~~ 83 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLAD----RVGVRNIFFT-AIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhchHHHHHH-HHH
Confidence 45566666666666666667778899999999999999999999999999999999999999 9999997765 555
Q ss_pred HHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhc
Q 011056 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATG 186 (494)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g 186 (494)
...++.+.+.++++... ......+.+++.+........... ++++|++ +.+......++|..+|+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~--------l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 84 LFTLGSLFCALSGTLNE--------LLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMA-AMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHHHHhCCHHH--------HHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHH-HHHHHHHHHHHHHHhhhHHH
Confidence 66666666667766521 112222333333222111111111 5566665 88999999999999999987
Q ss_pred ccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC---------------cccc
Q 011056 187 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS---------------EEGH 251 (494)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---------------~~~~ 251 (494)
+.+ ... .+||+.|.+......+..+......|+.+.... +.+... .+.+
T Consensus 155 g~l-----~~~----------~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~ 218 (471)
T PRK10504 155 GLL-----VEY----------ASWHWIFLINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSK 218 (471)
T ss_pred HHH-----Hhh----------ccHHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCC
Confidence 763 111 179999998877666665555555554432211 100000 0000
Q ss_pred cc--c---------------------hhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCC
Q 011056 252 EQ--S---------------------SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGG 308 (494)
Q Consensus 252 ~~--~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (494)
.. . ++..+.+.. -.+.++| |+++..+...++.+.+......+.+.|+. ..++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 294 (471)
T PRK10504 219 GLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALF-SLKLFRT--RTFSLGLAGSFAGRIGSGMLPFMTPVFLQ-IGLGF 294 (471)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-CHHHhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence 00 0 000000000 1234556 67777777666666665544444555553 33332
Q ss_pred CCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCC
Q 011056 309 EPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPN 388 (494)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (494)
++. ...+......+..+++.++.+++.||+|+|+++..+..+.++...++.+.. +.
T Consensus 295 ~~~----------~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~- 350 (471)
T PRK10504 295 SPF----------HAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA-------------LL- 350 (471)
T ss_pred CHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc-------------cc-
Confidence 221 122334445666677778899999999999999888887777766655441 11
Q ss_pred chHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 389 GIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 389 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
.+.+.......+.|++.+...+....+..+.+|+ +.+|.++|+.++..++|..+|+.+.|.+.+..|
T Consensus 351 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 351 GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD--NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1233334445566777777777778888888898 899999999999999999999999999998766
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-25 Score=215.79 Aligned_cols=343 Identities=12% Similarity=0.063 Sum_probs=219.3
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
+......+.+|.+.+++|.|..+.++..+++.++..+++++.|+++| |+||||.++. +.+...++.+...+++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~~~~~~~~~~~ 101 (406)
T PRK15402 27 IANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSD----RIGRRPVMLA-GVAFFILTCLAILLAQSI 101 (406)
T ss_pred hhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHH-HHHHHHHHHHHHHHHccH
Confidence 34555556778888999999999999999999999999999999999 9999987665 556666676767677766
Q ss_pred ccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcc
Q 011056 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 201 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~ 201 (494)
..+ .....+.+++.+........... ++++|.+ ..+.......+|..+|+.+++.. ...
T Consensus 102 ~~l--------~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~l-----~~~---- 163 (406)
T PRK15402 102 EQF--------TLLRFLQGIGLCFIGAVGYAAIQESFEEADAIK-ITALMANVALLAPLLGPLVGAAL-----IHV---- 163 (406)
T ss_pred HHH--------HHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHH-HHHHHHHHHHHHHHHHHHHHHHH-----HHc----
Confidence 211 11112222222221111111111 5555655 77877777788888888887652 111
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHH
Q 011056 202 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI 281 (494)
Q Consensus 202 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (494)
.+||+.|++.++..++..+..++..||++++.+++ . +.++..++..+.+++ |+++..++
T Consensus 164 ------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~--~~~~~~~~ 222 (406)
T PRK15402 164 ------LPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK---------L----SLKELGRDYKLVLKN--RRFVAGAL 222 (406)
T ss_pred ------cCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc---------c----cHHHHHHHHHHHHcC--cHHHHHHH
Confidence 17899998887777666665555666654321111 0 011123344455666 66776666
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 011056 282 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILM 361 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~ 361 (494)
..++..........+.+.++.++ ++.++. ..+ .......++.+++.++.+++.||+++|+....+.++.
T Consensus 223 ~~~~~~~~~~~~~~~~p~~~~~~-~g~~~~---------~~g-~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~ 291 (406)
T PRK15402 223 ALGLVSLPLLAWIALSPVILISG-EQLSSY---------EYG-LLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM 291 (406)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-hCCCHH---------HHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555444444444455555332 222211 111 2222334567788999999999999999988888777
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHH
Q 011056 362 ALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIP 441 (494)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 441 (494)
.++..++..... ....+.+...+...+.|++.+...+........ .++ +++|+..++.+....++
T Consensus 292 ~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~--~~~g~~~~~~~~~~~~~ 356 (406)
T PRK15402 292 VAGLLLAALATV------------ISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSD--VSKGTVSAAMGMLSMLI 356 (406)
T ss_pred HHHHHHHHHHHH------------cccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hcc--ccccHHHHHHHHHHHHH
Confidence 777776655420 011134445566777888887766555454433 344 78999999999999999
Q ss_pred HHHHhhhhhhhhhhcC
Q 011056 442 QIVVSMGSGPWDQLFG 457 (494)
Q Consensus 442 ~~l~~~~~g~l~~~~g 457 (494)
+.+|+.+.+.+.+..+
T Consensus 357 ~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 357 FTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHHHHhcccCCc
Confidence 9999999999988765
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=222.61 Aligned_cols=385 Identities=12% Similarity=0.067 Sum_probs=230.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHHHH-hCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHH
Q 011056 33 LLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (494)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~ 111 (494)
.+.+....+...+.+....++++.+.++ +|+|..+.|++.++..+...+++|+.|+++| |+||||.+++.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~D----r~g~r~~~~~~~~~~- 86 (420)
T PRK09528 12 YWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISD----KLGLKKHLLWIISGL- 86 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHHHHHH-
Confidence 3333344444445566667888888755 9999999999999999999999999999999 999999776633322
Q ss_pred HHHHH-HH--hhccccccccCCCCCCcchHHHHHHHHHHhh-ccccccccc--c--ccchhhHHhHHHHHHHHHHHHHHh
Q 011056 112 AVAVL-LI--GLSADIGWLLGDRGDFRPRAIAVFVFGFWIL-DVANNMTQG--K--DHRRTRVANAYFSLFMAVGNILGY 183 (494)
Q Consensus 112 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~--~~~r~~~~~~~~~~~~~~g~~~g~ 183 (494)
++... .. ..++... ........+..+..+.. ......... + .++++. .++......++|..+++
T Consensus 87 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~~g~~i~~ 158 (420)
T PRK09528 87 LVLFGPFFIYVFAPLLQ-------YNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGF-EYGRARMWGSLGWALCA 158 (420)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccc-cchhhHHhhhHHHHHHH
Confidence 22221 11 1111100 00000011111111111 111111111 1 122332 56777788889999999
Q ss_pred hhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHH
Q 011056 184 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 263 (494)
Q Consensus 184 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (494)
.+++.+. . .+|++.|++.+++.++..++.++..+|++++.+.++ + + +.+ +++...+
T Consensus 159 ~~~g~l~-----~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~~~----~~~~~~~ 214 (420)
T PRK09528 159 FIAGILF-----N-----------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN-A-L--GAN----ASAVSLK 214 (420)
T ss_pred HHHHHHH-----h-----------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc-c-h--hcc----cccccHH
Confidence 8877531 1 167888888877666665555444444332211110 0 0 000 1122344
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 011056 264 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 343 (494)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 343 (494)
+..+.+|+ |.++.+.+........+.....+.+.++.+. ++... . +............+...++.++.|+
T Consensus 215 ~~~~~l~~--~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~--~~~~~g~~~~~~~~~~~~~~~~~g~ 284 (420)
T PRK09528 215 DALALLKL--PKFWFLVLYVIGVACFYDVFDQQFPNFFASF-FATPE-----Q--GTRVFGYLNSFQVFLEALIMFFAPF 284 (420)
T ss_pred HHHHHccC--CCeEeehHHHHHHHHHHHHHHHHHHHHHHHH-HhccC-----c--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666 6665554444333333333333445555322 11100 0 0011122233456667889999999
Q ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccC
Q 011056 344 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 423 (494)
Q Consensus 344 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 423 (494)
+.||+|+|+.+..+..+.+++.++..+.. +.+..+....+.+++.+...+....++.+.+|+
T Consensus 285 l~dr~g~~~~~~~~~~l~~~~~~l~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~- 346 (420)
T PRK09528 285 IINRIGAKNALLLAGTIMAVRIIGSGFAT-----------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDV- 346 (420)
T ss_pred HHHHhCcchhhHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-
Confidence 99999999998888888877777666542 345556666777777777666667788888888
Q ss_pred CCCcchhhhH-HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 424 GLGQGLSLGV-LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 424 ~~~~g~~~g~-~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
+.+++..+. +++...+|.+++|.+.|++.|..| +...|...+++.++..++.++..+++
T Consensus 347 -~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G--~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 347 -RLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG--FQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred -cceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888887765 678889999999999999999877 77788877777776666555554443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-26 Score=216.72 Aligned_cols=353 Identities=17% Similarity=0.188 Sum_probs=219.2
Q ss_pred hhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHH-
Q 011056 40 AGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL- 117 (494)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~- 117 (494)
.+...+......+.+|.+. +++|.|+.++|++.+++.+...+++|+.|+++| |+||||.++. +.+...++.+.
T Consensus 24 ~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~D----r~g~r~~l~~-~~~~~~~~~~~~ 98 (392)
T PRK12382 24 VFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLAD----QYGAKRSALQ-GMLACGLAGLAY 98 (392)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHH----hhcchHHHHH-HHHHHHHHHHHH
Confidence 3333345566667788764 789999999999999999999999999999999 9999997766 43333333222
Q ss_pred --Hhhc-----cccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcc
Q 011056 118 --IGLS-----ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGS 187 (494)
Q Consensus 118 --~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~ 187 (494)
.... +++. .......+.+++............. ++++|++ ++++.+.....|..+|+.+++
T Consensus 99 ~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-a~~~~~~~~~~g~~~g~~~~~ 169 (392)
T PRK12382 99 LLAAILPVSAPFKFA--------LLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGK-VMSWNGMAMYGALAAGAPLGL 169 (392)
T ss_pred HhhhccccchhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccch-hhhHHHHHHHHHHHHHHHHHH
Confidence 1111 1220 0011112222222222111111111 6777877 999999999999999999876
Q ss_pred cccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHH
Q 011056 188 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFG 267 (494)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (494)
.+. .. .+|++.+.+..+..++... .....||.+++ + + + ++..++..+
T Consensus 170 ~l~-----~~----------~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~-------~-~------~~~~~~~~~ 216 (392)
T PRK12382 170 LLH-----SH----------FGFAALALTTMVLPLLAWA-FNGTVRKVPAH---A-------G-E------RPSLWSVVG 216 (392)
T ss_pred HHH-----hc----------cChHHHHHHHHHHHHHHHH-HHHhccCCCCC---c-------c-c------CchHHHHHH
Confidence 521 11 1677766654443322221 11222222110 0 0 0 011222222
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011056 268 TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 347 (494)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr 347 (494)
.+.. +.. ..++...+......+.+.++.+. + ++ ...+......++.++++++.+++.||
T Consensus 217 ~~~~--~~~-----~~~l~~~~~~~~~~~~~~~~~~~--~--------~~----~~~~~~~~~~~~~~~~~~~~g~l~~r 275 (392)
T PRK12382 217 LIWK--PGL-----GLALQGVGFAVIGTFVSLYFASK--G--------WA----MAGFTLTAFGGAFVLMRVLFGWMPDR 275 (392)
T ss_pred HHHH--hHH-----HHHHHHHHHhHHHHHHHHHHHhc--C--------Cc----hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 111 11122223333444555565432 1 11 01122334566678889999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCc
Q 011056 348 WGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 427 (494)
Q Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (494)
+|+|+.+..+..+.+++.+++.... +.+...+...+.|++.+...+...+...+..|+ +++
T Consensus 276 ~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~ 336 (392)
T PRK12382 276 FGGVKVAIVSLLVETVGLLLLWLAP-----------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS--QVR 336 (392)
T ss_pred cCCCeehHHHHHHHHHHHHHHHHcc-----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH--HHH
Confidence 9999998888888777776655441 244555667778888887777777788888888 899
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 428 GLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 428 g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
|++.|+.+....+++.++|.+.|.+.|..| +...|.+.+++.+++.++.++.
T Consensus 337 g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 337 GTALGGYAAFQDIAYGVSGPLAGMLATSFG--YPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999877 7778888888777777666544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=215.16 Aligned_cols=344 Identities=16% Similarity=0.116 Sum_probs=226.7
Q ss_pred HHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcc-
Q 011056 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA- 122 (494)
Q Consensus 44 ~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~- 122 (494)
.++.......+|.+..+++.++.+.+++.+++.++..+++|+.|+++| |+||||.++. +.+...++..+..+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~~~~-~~~~~~~~~~~~~~~~~ 86 (365)
T TIGR00900 12 LIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALAD----RYDRKKVMIG-ADLIRAVLVAVLPFVAL 86 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHH----hhchhHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345566667788899999999999999999999999999999999999 9999997776 4444444444444444
Q ss_pred ----ccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccc
Q 011056 123 ----DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 195 (494)
Q Consensus 123 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~ 195 (494)
++.. ......+.+++.+........... ++++|++ ..++......+|..+|+.+++.+ .
T Consensus 87 ~~~~~~~~--------~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~l~~~l-----~ 152 (365)
T TIGR00900 87 LGGLNIWQ--------VYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQ-ANSLSQAVRSLFYIVGPGIGGLM-----Y 152 (365)
T ss_pred cCCCcHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH-HHhHHHHHHHHHHHHHHHHHHHH-----H
Confidence 4311 111222222222222222223322 6667776 99999999999999999998763 1
Q ss_pred hhhhcccccccccchhHHHHHHHHHHHHHHHHHhhc-ccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchH
Q 011056 196 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA-AHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSG 274 (494)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (494)
.. .+|++.|++.++..++..+..... .||++++++++ .++ +..+...+...+.+++ |
T Consensus 153 ~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~--~ 210 (365)
T TIGR00900 153 AT----------LGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQA-------LSN---AVLRDTREGIKFVLKN--P 210 (365)
T ss_pred HH----------hhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccc-------cch---hHHHHHHhHHHHHHcC--c
Confidence 11 178999888776555544433322 22221111000 000 0011112223334455 6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 275 TIWIILIVTALTWLGWFPFL-LFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
.++..+...++......... .+.+.+.. +.++.+.. ..........++.+++.++.+++.||.+||+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 279 (365)
T TIGR00900 211 LLRTLLLLALLFNLVFAPAIVALFPYVQS-KYLGRGST----------HYGWVLAAFGLGALLGALLLGLLGRYFKRMAL 279 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhCCchH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 66666666555555544444 44555553 32332221 11233444567788999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
...+..+.++++....+.. + +.+...+..++.|++.+...+...+++.|.+|+ +++|++.|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~ 341 (365)
T TIGR00900 280 MTGAIFVIGLAILVVGLTP--------------P--NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA--ELLGRVFGA 341 (365)
T ss_pred HHHHHHHHHHHHHHHHhhc--------------h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHH
Confidence 8887777777666655542 1 245566777888999988888888999999998 899999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
.+....+++.++|.+.|.+.|..|
T Consensus 342 ~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 342 QFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999998754
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=214.44 Aligned_cols=353 Identities=11% Similarity=0.027 Sum_probs=223.3
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
.........+|++.+++|+|.++.+++.+++.++..+++++.|+++| |+||||.++. +.+..+++.++..+++++
T Consensus 21 ~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~g~r~~~~~-~~~~~~i~~~l~~~~~~~ 95 (394)
T PRK03699 21 ALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLME----IIPLKRQLIF-GFALMILAVAGLMFSHSL 95 (394)
T ss_pred HHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHH-HHHHHHHHHHHHHHcchH
Confidence 34445556789999999999999999999999999999999999999 9999986665 666667777777777776
Q ss_pred ccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcc
Q 011056 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 201 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~ 201 (494)
.. ......+.+++.+........... ++++|++ ..+......++|..+++.+.+.+ .. .
T Consensus 96 ~~--------~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~l-----~~---~- 157 (394)
T PRK03699 96 AL--------FSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGS-RLLFTDSFFSMAGMIFPIIAAYL-----LA---R- 157 (394)
T ss_pred HH--------HHHHHHHHHHhhHhhccchhHHhhhhcccchHHH-HHHHHHHHHHHHHHHHHHHHHHH-----Hh---c-
Confidence 21 111122222222222211222222 5556665 77777777888888888775542 10 0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHH
Q 011056 202 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI 281 (494)
Q Consensus 202 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (494)
..+||+.|.+.+++.++..++.++ ++.|+.++++. + ++++ .. + ...+ +.++...+
T Consensus 158 -----~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~---~--~~~~---~~----~----~~~~--~~~~~~~~ 212 (394)
T PRK03699 158 -----SIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHAP---K--ADKP---VA----K----EKWG--IGVLFLAI 212 (394)
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHh--cCCccccccCc---c--ccCc---cc----c----ccCC--hHHHHHHH
Confidence 127999998877766555443332 22222111110 0 0000 00 0 0012 45555555
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 011056 282 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILM 361 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~ 361 (494)
..++...+...+..|.|.|+.++ ++.++.+ .........++..++.++.+++.||+++|+.+.....+.
T Consensus 213 ~~~~~~~~~~~~~~~~p~~l~~~-~g~s~~~----------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~ 281 (394)
T PRK03699 213 AALLYILAQLTFISWVPEYAQKK-FGMSLED----------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLA 281 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCChHH----------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 55555555666777888888543 3333221 112233455678899999999999999999887766665
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHH
Q 011056 362 ALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIP 441 (494)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 441 (494)
.+...++... + +.+...+..++.|++.+...+...+...+..| +++++..|....+..+|
T Consensus 282 ~~~~~~~~~~--------------~---~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g 341 (394)
T PRK03699 282 LVLMYLFVNT--------------D---DPSHLLYAILGLGFFSSAIYTTIITLGSQQTK---VASPKLVNFILTCGTIG 341 (394)
T ss_pred HHHHHHHHHc--------------C---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCCHHHHHHHHHhhhHH
Confidence 5544444332 1 23344455667777777677776677777665 34567788888899999
Q ss_pred HHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHH
Q 011056 442 QIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIA 478 (494)
Q Consensus 442 ~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~ 478 (494)
+.++|.+.|.+.|..| +...++..+++++++.+..
T Consensus 342 ~~i~p~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 342 TMLTFVVTSPIVAHFG--LQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHHHHHHHHHhC--chhhhhhhHHHHHHHHHHH
Confidence 9999999999999877 6666666666666554433
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=220.69 Aligned_cols=399 Identities=10% Similarity=0.014 Sum_probs=221.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHhCCCchh-HHH-----HHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHH
Q 011056 41 GGIQFGWALQLSLLTPYVQELGIPHAW-ASI-----IWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (494)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~g~s~~~-~g~-----~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~ 114 (494)
+.-.+++.+.....|.+.++++.+.+. .++ +.++..++..+++++.|+++| |+||||.++. +.++++++
T Consensus 26 ~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~D----r~Grr~~l~~-~~~l~~i~ 100 (490)
T PRK10642 26 AMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGD----KYGRQKILAI-TIVIMSIS 100 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccHHHHHH-HHHHHHHH
Confidence 333356666666777777887644322 222 246777889999999999999 9999997766 77777888
Q ss_pred HHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccc
Q 011056 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 191 (494)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~ 191 (494)
.+++++++++.+.=.-........+.+.+++.+........... ++++|++ ..++...+..+|..+|+.+...+.
T Consensus 101 ~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~-~~~~~~~~~~~G~~lg~~~~~~~~- 178 (490)
T PRK10642 101 TFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGF-MGSWLDFGSIAGFVLGAGVVVLIS- 178 (490)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88888998873100000000011222223333222222222222 6777776 888888877888887776543310
Q ss_pred cccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhh
Q 011056 192 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRY 271 (494)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (494)
.+.... .....+||+.|++.++..++ .++....+||+|+....+++.++.++ +...+.++.+++++++ +
T Consensus 179 ----~~~~~~--~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~ 247 (490)
T PRK10642 179 ----TIVGEA--NFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQGDR-EGLQDGPKVSFKEIAT---K 247 (490)
T ss_pred ----HhcCHH--HhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhhcc-ccccccccCCHHHHHH---H
Confidence 000000 00113899999997655444 33345578888763221110000000 0000011122333332 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 011056 272 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG 351 (494)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~ 351 (494)
.++.+.......++....++....|.+.++.+. ++.+. ....+......++.+++.++.|+++||+|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~----------~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 316 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-LHYSE----------DHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR 316 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 223333232333334455666677788887532 22211 1122333445666788889999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchh
Q 011056 352 FIWGISNILMALCFLA-MLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLS 430 (494)
Q Consensus 352 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 430 (494)
+.+..+.++..++... +.... .. +...+++..++.+++.+........++.|.+|+ +.||++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~--~~Rg~~ 379 (490)
T PRK10642 317 PFVILGSVALFVLAIPAFILIN-------------SN--VIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT--HIRYSA 379 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------------CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--ccchHH
Confidence 9887776544333222 22221 11 233344455556666665555666778899999 999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCC
Q 011056 431 LGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 487 (494)
Q Consensus 431 ~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 487 (494)
.|+.+....+++.++|.+.+++.+..++ ....+.+..+.++++.+..++ .||+++
T Consensus 380 ~g~~~~~~~~~g~~~p~i~g~l~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~pes~~ 434 (490)
T PRK10642 380 LAAAFNISVLVAGLTPTLAAWLVESTQN-LMMPAYYLMVVAVIGLITGVT-MKETAN 434 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHH-hccccC
Confidence 9975555666778999999999886542 233333444444444444443 355543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=214.83 Aligned_cols=380 Identities=12% Similarity=0.046 Sum_probs=239.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHH
Q 011056 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (494)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~ 109 (494)
...+..+...++...+........+|.+.+++|+|+.+.|++.+.+.++..+++++.|+++| |+||||.++. +.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~d----r~G~r~~l~~-g~~ 99 (438)
T PRK10133 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIIT-GLF 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHH-HHH
Confidence 34445555666666666667777899999999999999999999999999999999999999 9999987766 666
Q ss_pred HHHHHHHHH---hhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHh
Q 011056 110 SIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGY 183 (494)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~ 183 (494)
..+++.+++ ..++++. .....+.+.+++.+......+.... +++++.+ ..+..+....+|..+|+
T Consensus 100 ~~~~~~~l~~~~~~a~~~~--------~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~-~~s~~~~~~~~G~~~g~ 170 (438)
T PRK10133 100 LYALGAALFWPAAEIMNYT--------LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHF-RLNLAQTFNSFGAIIAV 170 (438)
T ss_pred HHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHH-HHHHHHHHHHHHHHHHH
Confidence 666666554 3566662 2223345555555555555555433 3444433 68888999999999999
Q ss_pred hhcccccccc----------------cchhhhcccccccccchhHHHHHHH-HHHHHHHHHHhhcccCCCCCCCCCCCCC
Q 011056 184 ATGSFSGWFK----------------ILPFTLTSACNVDCANLKSAFFLDV-IFIAITTCISASAAHEVPLGSHDQSAPF 246 (494)
Q Consensus 184 ~~g~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 246 (494)
.+++.+.... ..+|.. ....+||+.|+... +..++..++.....||.+.++ + +
T Consensus 171 ~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~-----~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~--~-~-- 240 (438)
T PRK10133 171 VFGQSLILSNVPHQSQDVLDKMTPEQLSAYKH-----SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN--H-S-- 240 (438)
T ss_pred HHHHHHHhcCCcccchhhhhccChhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc--c-c--
Confidence 8876421000 001100 00025777776443 333333333233344422110 0 0
Q ss_pred CccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHH
Q 011056 247 SEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALG 326 (494)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (494)
+++ ..+..++..+.+++ |.++...+..++..........|.+.|+.++.++.++ ....+.
T Consensus 241 ----~~~----~~~~~~~~~~ll~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~----------~~ag~~ 300 (438)
T PRK10133 241 ----DAK----QGSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA----------GFAANY 300 (438)
T ss_pred ----ccc----ccchhhhHHHHHhC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCH----------HHHHHH
Confidence 000 11112333455566 6666655555555555555556677675444333332 122344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++.++++++.+++.||+|+|+++..+..+..+.+++..+. +. . .....+.+.|++.+
T Consensus 301 ~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--------------~~---~-~~~~~~~l~glg~~ 362 (438)
T PRK10133 301 LTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--------------GG---H-VGLIALTLCSAFMS 362 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--------------CC---h-HHHHHHHHHHHHHH
Confidence 556777889999999999999999999888777666555544333 21 1 23455677899999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHH
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGL 476 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~ 476 (494)
..+|..++...+..|+ +.+++.++..+ ..++..++|.+.|.+.|..| +....|.+...+.++...
T Consensus 363 ~i~P~~~s~a~~~~~~---~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g-~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 363 IQYPTIFSLGIKNLGQ---DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAVIFI 427 (438)
T ss_pred HHHHHHHHHHHcccch---hhccchhHHhH-HhccchHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 9999999999998774 56778887764 55788899999999998865 234455554444444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=217.09 Aligned_cols=362 Identities=13% Similarity=0.062 Sum_probs=230.2
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhh----
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL---- 120 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~---- 120 (494)
+........+|.+.++++.++.+.|++.+...++..+++++.|+++| |+||||.++. +.+..+++......
T Consensus 31 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~d----r~g~~~~l~~-~~~~~~~~~~~~~~~~~~ 105 (417)
T PRK10489 31 FGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLAD----RYDRKKLILL-ARGTCGLGFIGLALNAFL 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhh----hcCCceEEEe-hHHHHHHHHHHHHHHHHc
Confidence 44555566788888999999999999999999999999999999999 9999997765 44444444333221
Q ss_pred -ccccccccCCCCCCcchHHHHHHHHHHh----hccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhccccccc
Q 011056 121 -SADIGWLLGDRGDFRPRAIAVFVFGFWI----LDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 192 (494)
Q Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~ 192 (494)
.+++ ....+..+..++ .......... ++++|++ +.++.....++|..+|+.+++.+
T Consensus 106 ~~~~~------------~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~l~g~l--- 169 (417)
T PRK10489 106 PEPSL------------LAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQ-AGAITMLTVRLGSVISPALGGLL--- 169 (417)
T ss_pred CCCcH------------HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHH-HHHHHHHHHhHHHHhHHHHHHHH---
Confidence 2232 111222222222 1122222222 5566666 88999899999999999998763
Q ss_pred ccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhc
Q 011056 193 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYF 272 (494)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (494)
... .+|++.|.+.++..++..+. ...+||.+++++++ +++ .+...+.....+++
T Consensus 170 --~~~----------~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~- 223 (417)
T PRK10489 170 --IAA----------GGVAWNYGLAAAGTFITLLP-LLRLPALPPPPQPR---------EHP---LRSLLAGFRFLLAS- 223 (417)
T ss_pred --HHH----------HhhHHHHHHHHHHHHHHHHH-HHhCCCCCCCCccc---------ccc---hHHHHHHHHHHHcC-
Confidence 111 16788888777665554443 34556644321111 000 11111222333444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Q 011056 273 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF 352 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~ 352 (494)
+.++...+..++.. .......+.+.+..+ .++.++. ...+......++.+++.++.+++.||.++++
T Consensus 224 -~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~-~~g~~~~----------~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~ 290 (417)
T PRK10489 224 -PVVGGIALLGGLLT-MASAVRVLYPALADE-VWQMGAA----------QIGLLYAAVPLGAALGALTSGWLAHSARPGL 290 (417)
T ss_pred -hHHHHHHHHHHHHH-HHHhHHHhhHHHHHh-ccCCChh----------HhHHHHHHHHHHHHHHHHHHHHhhhccCcch
Confidence 45444433333322 223444566666643 2332221 1123334456778899999999999987777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhh
Q 011056 353 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 432 (494)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 432 (494)
.+..+..+.+++++.+.... +.+...+...+.|++.+...+...+++.+..|+ +.||+++|
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g 351 (417)
T PRK10489 291 LMLLSTLGSFLAVGLFGLMP-----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD--EMLGRING 351 (417)
T ss_pred HHHHHHHHHHHHHHHHHccc-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH--HHHHHHHH
Confidence 77777777766666554431 345556667777887777767777888999998 89999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCC
Q 011056 433 VLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 487 (494)
Q Consensus 433 ~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 487 (494)
+++....+|+.+||.+.|.+.+..| ....+...+++.++.+++.....++.|+
T Consensus 352 ~~~~~~~~g~~~g~~l~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (417)
T PRK10489 352 LWTAQNVTGDAIGAALLGGLGAMMT--PVASASASGFGLLIIGVLLLLVLGELRR 404 (417)
T ss_pred HHHHHHhhhHhHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999877 6667766666666655555555455443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=218.36 Aligned_cols=366 Identities=13% Similarity=0.064 Sum_probs=219.9
Q ss_pred HHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHH
Q 011056 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (494)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~ 114 (494)
......+...+.........|.+.+++|+|+.+.+++.+++.++..+++++.|.++| |+||||+++. +.+..+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~g~r~~~~~-~~~~~~~~ 90 (405)
T TIGR00891 16 AAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGD----RYGRRLPMVT-SIVLFSAG 90 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHH-HHHHHHHH
Confidence 344444445566666777888999999999999999999999999999999999999 9999997776 56666667
Q ss_pred HHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccc
Q 011056 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 191 (494)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~ 191 (494)
.++..+++++..+ .....+.+++.+........... ++++|++ +.++......+|..+++.+++..
T Consensus 91 ~~~~~~~~~~~~l--------~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~l~~~l-- 159 (405)
T TIGR00891 91 TLACGFAPGYITM--------FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNK-ASGLLISGYAVGAVVAAQVYSLV-- 159 (405)
T ss_pred HHHHHHhccHHHH--------HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhH-HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 7777777776211 12222233332222222222222 6677776 99999999999999999887652
Q ss_pred cccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccc----ccchhhhhhHHHHHHH
Q 011056 192 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH----EQSSDVHEAFLWELFG 267 (494)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 267 (494)
.... ..+||+.|.+.++..++. ++.....||+++.++++++++...++ .++++..+...++...
T Consensus 160 ---~~~~--------~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (405)
T TIGR00891 160 ---VPVW--------GDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAA 227 (405)
T ss_pred ---HHhc--------CccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhH
Confidence 1111 115999998765544443 33445567765432211110000000 0000000001111111
Q ss_pred HhhhchHH----HHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 011056 268 TFRYFSGT----IWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 343 (494)
Q Consensus 268 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 343 (494)
..++..++ +........+..........+.+.++.++ ++.+. ...........++.+++.++.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~----------~~~~~~~~~~~~~~~~g~~~~g~ 296 (405)
T TIGR00891 228 AMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-LGLSP----------HTVANIVVFSNIGAIVGGCVFGF 296 (405)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-hCCCH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 22222222222222333344566666433 22211 11112234456778999999999
Q ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccC
Q 011056 344 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 423 (494)
Q Consensus 344 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 423 (494)
+.||+|||+.+..+..+..+........ .. +.+...+...+.++..+...+....++.|.+|+
T Consensus 297 l~dr~g~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 359 (405)
T TIGR00891 297 LGDWLGRRKAYVCSLLAGQLLIIPVFAI--------------GA--NVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT- 359 (405)
T ss_pred HHHHhCchhhhHHHHHHHHHHHHHHHHh--------------CC--chHHHHHHHHHHHHHHccchhhHHHHHhhhCCc-
Confidence 9999999998877766543332222221 11 233334444555555555556677888999998
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 424 GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 424 ~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
+++|+++|+.+....++..++|.+.|.+.|..|
T Consensus 360 -~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 360 -DQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred -chhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999877
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=220.40 Aligned_cols=350 Identities=14% Similarity=0.135 Sum_probs=208.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhh
Q 011056 41 GGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (494)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~ 120 (494)
+...+.........|.+.+++|+|+.+.+++.+++.++..+++++.|+++| |+|||+.++. +.+..+++.+...+
T Consensus 28 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~d----r~g~r~~l~~-~~~~~~~~~~~~~~ 102 (426)
T PRK12307 28 VFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLAD----KFGRKPLMMW-SIVAYSVGTGLSGL 102 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHH-HHHHHHHHHHHHHH
Confidence 333455556666778888999999999999999999999999999999999 9999887666 66677777777778
Q ss_pred ccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchh
Q 011056 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF 197 (494)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~ 197 (494)
++++..+ .....+.+++.+........... ++++|++ +.++...+.++|.++++.+.+... .
T Consensus 103 ~~~~~~l--------~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~lg~~~~~~l~~~l~-----~- 167 (426)
T PRK12307 103 ASGVIML--------TLSRFIVGMGMAGEYACASTYAVESWPKHLKSK-ASAFLVSGFGIGNIIAAYFMPSFA-----E- 167 (426)
T ss_pred HhHHHHH--------HHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhH-hhhHHHHHHhHHHHHHHHHHHHHc-----c-
Confidence 7776221 12222333333322222222222 6666776 899999999999998887754310 0
Q ss_pred hhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHH
Q 011056 198 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIW 277 (494)
Q Consensus 198 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (494)
..+||+.|++..+..++ .+......||+++.++++.+. ++++++...+....+.++.+++ +.++
T Consensus 168 ---------~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~ 231 (426)
T PRK12307 168 ---------AYGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEAKLSG----KGKHSQSAWSVFSLSMKGLFNR--AQFP 231 (426)
T ss_pred ---------cCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHhhhhc----cccccccchhhhhHHHHHHHhh--chHH
Confidence 02799999875443322 222222334443211111000 0000000011111233444454 4443
Q ss_pred HHHHHH---HHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 011056 278 IILIVT---ALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 354 (494)
Q Consensus 278 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~ 354 (494)
...... +..+........+.+.++.+. +.++ ...........++.+++.++.+++.||++||+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~----------~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~ 299 (426)
T PRK12307 232 LTLCVFIVLFSIFGANWPIFGLLPTYLAGE--GFDT----------GVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTF 299 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 322221 122222223445667666431 2111 1112333445677889999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHh--hhhhhchhhhHhhhcccCCCCcchhhh
Q 011056 355 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL--AITYSVPYALVSIRTESLGLGQGLSLG 432 (494)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~g 432 (494)
..+.++..+..+.+... +.. ... .....+++.+. ....+.....+.|.+|+ +.+|+++|
T Consensus 300 ~~~~~~~~~~~~~~~~~--------------~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~g 360 (426)
T PRK12307 300 SIGLLMSFLFIFPLFRI--------------PQD-NYL--LLGACLFGLMATNVGVGGLVPKFLYDYFPL--EVRGLGTG 360 (426)
T ss_pred HHHHHHHHHHHHHHHHH--------------ccc-cHH--HHHHHHHHHHHhcccHhHHHHHHHHHhCcH--HHHhhhhh
Confidence 87777665555444333 110 111 12222333322 22233455677899998 89999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 433 VLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 433 ~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
+.+....+++.++|.+.|++.+..|
T Consensus 361 ~~~~~~~~~~~~gp~~~g~l~~~~g 385 (426)
T PRK12307 361 LIYNLAATSGTFNSMAATWLGITMG 385 (426)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999876
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-25 Score=210.90 Aligned_cols=350 Identities=16% Similarity=0.126 Sum_probs=227.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHH
Q 011056 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (494)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~ 111 (494)
..+..+...+...++.....+..|.+.+++|.|+++.+++.+++.++..+++++.|+++| |+||||.++. +.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~-~~~~~ 80 (385)
T TIGR00710 6 FALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSD----RYGRRPVLLL-GLFIF 80 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH----hcCChHHHHH-HHHHH
Confidence 344444444444456666667889999999999999999999999999999999999999 9999887665 66666
Q ss_pred HHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhccc
Q 011056 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSF 188 (494)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~ 188 (494)
+++.+...+++++..+ .....+.+++............. ++++|++ ..+.......+|..+|+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~--------~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~ 151 (385)
T TIGR00710 81 ALSSLGLALSNNIETL--------LVLRFVQAFGASAGSVISQALVRDIYPGEELSR-IYSILMPVLALAPAVAPLLGGY 151 (385)
T ss_pred HHHHHHHHHHccHHHH--------HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776211 11111222222222222222222 5667776 9999999999999999988775
Q ss_pred ccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 011056 189 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGT 268 (494)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (494)
+ ... .+||+.|++.++..++..+...+..||++++++++ +.+...++..+.
T Consensus 152 l-----~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 202 (385)
T TIGR00710 152 I-----LVW----------LSWHAIFAFLSLAGILLSALIFFILPETLPYEARI--------------QISTYFETFLLL 202 (385)
T ss_pred H-----HHH----------cCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC--------------CHHHHHHHHHHH
Confidence 2 111 17899998887777766666666667654322110 011223344555
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011056 269 FRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 348 (494)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~ 348 (494)
+++ |+++...+...+..........+.+.++.++ ++.++. ..........+..+++.++.+++.||+
T Consensus 203 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----------~~g~~~~~~~~~~~~~~~~~g~l~~~~ 269 (385)
T TIGR00710 203 LKS--KMFWGYALIYGASFGGFFAFFSGAPFVYIDI-MGVSPS----------VFGLLFALNIIAMIFGGFLNGRFIKKW 269 (385)
T ss_pred HcC--chhHHHHHHHHHHHHHHHHHHHcChHHHHHH-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666 6677666665555555556666666666432 332221 112333445677889999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcc
Q 011056 349 GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 428 (494)
Q Consensus 349 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 428 (494)
++|+....+..+..++.+++..... +.............+.|++.+...+.......|..| +++|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~g 334 (385)
T TIGR00710 270 GAKSLLRMGLILFAVSAVLLEITAI------------LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP---HVAG 334 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH------------hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---ccch
Confidence 9999988887777776665554320 110123344455667778888777777777777665 5789
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhh
Q 011056 429 LSLGVLNLAIVIPQIVVSMGSGPW 452 (494)
Q Consensus 429 ~~~g~~~~~~~~g~~l~~~~~g~l 452 (494)
++.++.+.....+..+.+.+.+.+
T Consensus 335 ~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 335 TASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999888776555655555543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-25 Score=210.55 Aligned_cols=357 Identities=11% Similarity=-0.001 Sum_probs=240.1
Q ss_pred HhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHH-HHHHH
Q 011056 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI-AVAVL 116 (494)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~-~~~~~ 116 (494)
...+.....++...+++|.+.+++|.|..++|++.+++.+...+.+|++|.++| |+|||+.......... .....
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~~~~~~~l~~~~ 86 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIK----DANHIIIALRLLALASAIFAAA 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHHH
Confidence 344444456778888999999999999999999999999999999999999999 8887443222111111 11112
Q ss_pred HHhhccccccccCCCCCCcchHHHHHHHHHHhhccc-cccccc----cccchhhHHhHHHHHHHHHHHHHHhhhcccccc
Q 011056 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVA-NNMTQG----KDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 191 (494)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~ 191 (494)
....++++ ....+.....+..... ...... .+++|++ .++......++|.++++.+++.+
T Consensus 87 ~~~~~~~~------------~~l~~~~~l~~~~~~~~~p~~~al~~~~~~~~~~-~~g~~~~~~slG~~~g~~l~g~l-- 151 (382)
T TIGR00902 87 FSAGAHNA------------WLLFIAIGLFALFFSAGMPIGDALANTWQKQFGL-DYGKVRLIGSAAFIIGSALFGGL-- 151 (382)
T ss_pred HHHhhhhH------------HHHHHHHHHHHHHHccchhHHHHHHHHHHHHcCC-CccHHHHHHHHHHHHHHHHHHHH--
Confidence 23344555 2222222222222111 111111 3344555 89999999999999999987763
Q ss_pred cccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhh
Q 011056 192 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRY 271 (494)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (494)
..+ .+||..|.+......+. ++... .+|+++++++++ +++ ....++..+.+|+
T Consensus 152 ---~~~----------~g~~~~f~~~~~~~~~~-~~~~~-~~~~~~~~~~~~------~~~------~~~~~~~~~~l~~ 204 (382)
T TIGR00902 152 ---IGM----------FDEQNILAILTAGLAFM-LIGFL-IKPTIPPKDAIP------EDE------SQGDSAFIALLKN 204 (382)
T ss_pred ---HHH----------cChhHHHHHHHHHHHHH-HHHHH-cCCCCCCCcccc------ccc------cccchhHHHHHcC
Confidence 221 17888887766543322 22223 333321111110 000 0112234566677
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 011056 272 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG 351 (494)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~ 351 (494)
|+++...+..++.+.+...+..+.+.++. + .+.+.. ..+ .......+..++..++.+++.||+|+|
T Consensus 205 --~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~-~g~s~~---------~~g-~l~~~~~~~~i~~~~~~~~l~~r~g~~ 270 (382)
T TIGR00902 205 --PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-A-AGISAS---------ATG-LLWGIGVLAEIIIFAFSNKLFQNCSAR 270 (382)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-CCCCHh---------HHH-HHHHHHHHHHHHHHHHhHHHHhhCCHH
Confidence 88888888888878787788888888885 3 332221 122 234456777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhh
Q 011056 352 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 431 (494)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 431 (494)
+.+.++.++..+....+.+.+ +.+.++....+.|+.++...+....++.+. |+ +++++.+
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~--~~~~~~q 330 (382)
T TIGR00902 271 DLLLISAIACVGRWAIIGAIE-----------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG--SEIAKLQ 330 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH--hhHHHHH
Confidence 999999999999888877663 467777888999999999998888888887 77 7889999
Q ss_pred hHHH-HHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHH
Q 011056 432 GVLN-LAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLI 477 (494)
Q Consensus 432 g~~~-~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~ 477 (494)
++++ ....+|..++|.++|.+.|..| . ..|...+++.+++.++
T Consensus 331 ~~~~~~~~g~g~~~g~~~~G~l~~~~g--~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 331 ALYNALAMGGLIAIFTAFAGFIYPTLG--A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--H-HHHHHHHHHHHHHHHH
Confidence 9987 4678999999999999999986 3 5677777777666544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=218.15 Aligned_cols=373 Identities=11% Similarity=0.059 Sum_probs=214.8
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
+......+++|.+.+++|+|..+.+++.+.+.++..+++++.|+++| |+|||+.+.. +.+...++.++.+++++.
T Consensus 50 ~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~G~r~~~~~-~~~~~~~~~~~~~~~~s~ 124 (476)
T PLN00028 50 VSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCD----LYGPRYGSAF-LLMLTAPAVFCMSLVSSA 124 (476)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHH-HHHHHHHHHHHHHHhcCH
Confidence 34444556788899999999999999999999999999999999999 9999886665 666667777777777776
Q ss_pred ccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcc
Q 011056 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 201 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~ 201 (494)
..+ .....+.+++.+.... ...... ++++|++ +.++.....++|..+++.+.... .......
T Consensus 125 ~~l--------~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~-a~g~~~~~~~~g~~~~~~~~~~i-----~~~~~~~ 189 (476)
T PLN00028 125 TGF--------IAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGT-ANGIAAGWGNLGGGVTQLLMPLV-----FPLIKDA 189 (476)
T ss_pred HHH--------HHHHHHHHHHHHhhHH-HHHHHHHhcChhheeH-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhc
Confidence 211 1111222222211111 111111 5667776 88888877777777776654321 1100000
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHH
Q 011056 202 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI 281 (494)
Q Consensus 202 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (494)
......+||+.|++.+++.++..++.++..+|.|+...++ .+++.+ .++....+.+++.+++ +++|.+.+
T Consensus 190 -~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~ 259 (476)
T PLN00028 190 -GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRE-----LKKSGT--MPKDSFSKVLRYGVTN--YRTWILAL 259 (476)
T ss_pred -CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhh-----HHhcCc--cccccHHHHHHHHHcC--chhHHHHH
Confidence 0000127999999988877776666655555544321100 000000 0011112234445555 66666666
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchH-----HH--
Q 011056 282 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF-----IW-- 354 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~-----~~-- 354 (494)
..++.......+..+.+.|+.++ ++.+. ...........++..+++++.|+++||++||+ ..
T Consensus 260 ~~~~~~~~~~~~~~~~p~~l~~~-~g~s~----------~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~ 328 (476)
T PLN00028 260 TYGYSFGVELTMDNIIAEYFYDR-FGLSL----------ETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWAL 328 (476)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHH
Confidence 55554444444555667776432 22221 11123344466778999999999999998652 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHH
Q 011056 355 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVL 434 (494)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 434 (494)
.....+.++..+++... . +.+...+..++++++.+...+..+++..+..| +.+|+..|+.
T Consensus 329 ~~~~~l~~i~~~~~~~~---------------~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~g~~~g~~ 388 (476)
T PLN00028 329 WIVQTLGGVFCIWLGRA---------------N--SLGAAIVVMILFSIFVQAACGATFGIVPFVSR---RSLGVISGLT 388 (476)
T ss_pred HHHHHHHHHHHHHhccc---------------c--hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh---hhchhhhhhh
Confidence 22222222222222221 1 23333444455555555444455556666544 7889999998
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcC-CCCcchHHHHHHHHHHHHHHHhhcc
Q 011056 435 NLAIVIPQIVVSMGSGPWDQLFG-GGNSPAFAVGGISALAGGLIAILAI 482 (494)
Q Consensus 435 ~~~~~~g~~l~~~~~g~l~~~~g-~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (494)
+....+|..++|.+.+ ..+ .++...|.+.+++.++++++.++.+
T Consensus 389 ~~~g~lg~~i~~~l~~----~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 389 GAGGNVGAVLTQLLFF----TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hccccHHHHHHHHHHH----hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 8777777766666543 211 1366778888888888777666553
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-25 Score=211.29 Aligned_cols=359 Identities=13% Similarity=0.070 Sum_probs=221.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHH
Q 011056 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (494)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~ 112 (494)
++.+....+...+......+++|.+.+++|.|..++|++.+++.++..+++++.|+++| |+||||.++. +.+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~d----r~g~k~~~~~-~~~~~~ 82 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIK----RIGFNRSYYL-ASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHH-HHHHHH
Confidence 44444444455567777788999999999999999999999999999999999999999 9999887766 666667
Q ss_pred HHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhcccccc-ccc--cccchhhHHhHHHHHHHHHHHHHHhhhcccc
Q 011056 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNM-TQG--KDHRRTRVANAYFSLFMAVGNILGYATGSFS 189 (494)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~ 189 (494)
++.....++++++.+ .....+.+++.+........ ... ++++|++ +.+......++|..+|+.+++.+
T Consensus 83 ~~~~~~~~~~~~~~l--------~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 83 AGCAGLGLMVGFWSW--------LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGR-LLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777776221 12222222222222111111 111 5666776 99999999999999999998763
Q ss_pred cccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHh
Q 011056 190 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTF 269 (494)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (494)
.. . .++...+..+........+.....+|+ .++ + + + . . +..+.+
T Consensus 154 ~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-------~-~-----~-~---~~~~~~ 197 (381)
T PRK03633 154 ST-----E-----------LMSVLPWVTGLVLAAILPLLFTRILNQ--QAE-N-------H-D-----S-T---SIWPML 197 (381)
T ss_pred cc-----c-----------ccchHHHHHHHHHHHHHHHHHhcccCC--CCC-C-------C-C-----C-C---CHHHHH
Confidence 11 0 001111111111111111111111221 110 0 0 0 0 0 112234
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 011056 270 RYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 349 (494)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g 349 (494)
++ +.++......+...........+.+.|+.+. +.++ . ..+ .......+..+++++..+++.||++
T Consensus 198 ~~--~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--g~s~--------~-~~g-~~~~~~~~~~~~~~~~~g~l~dr~~ 263 (381)
T PRK03633 198 KL--RQARLGVNGCIISGIVLGSLYGLMPLYLNHQ--GMSD--------A-SIG-FWMALLVSAGILGQWPIGRLADRFG 263 (381)
T ss_pred Hh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCH--------H-HHH-HHHHHHHHHHHHHHhhhHHHHHHcC
Confidence 44 4444433333333333344445667666431 2111 1 122 2233456778899999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcch
Q 011056 350 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGL 429 (494)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 429 (494)
+|+.+..+..+..++.+.+. .. ........+.+++.....+...+.+.|..|+ ++++.
T Consensus 264 ~~~~l~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~--~~~~~ 321 (381)
T PRK03633 264 RLLVLRVQVFVVILGSIAML-SQ-------------------AAMAPALFILGAAGFTLYPVAMAWACEKVEH--HELVA 321 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHh-hh-------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCH--HHHHH
Confidence 99998877777766655432 11 1122334455665556667777888888887 67777
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHh
Q 011056 430 SLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 430 ~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
..+..+....+|+.++|.++|.+.|..| +...|.+.+.+.++..+..+
T Consensus 322 ~~~~~~~~~~lG~~igp~~~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 322 MNQALLLSYTVGSLLGPSFTAMLMQNYS--DNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHH
Confidence 8888888999999999999999999877 66777777777666654444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-25 Score=210.73 Aligned_cols=361 Identities=15% Similarity=0.128 Sum_probs=217.7
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHh---hc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG---LS 121 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~---~~ 121 (494)
+.......+++++.+++|.|+.+.|++.+.+.++..+++++.|+++| |+||||.++. +.....++.+.+. ..
T Consensus 27 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d----r~g~k~~l~~-~~~~~~~~~~~~~~~~~~ 101 (402)
T TIGR00897 27 TGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAE----IIGPLKTMMI-GLLLWCVGHAAFIVFGLG 101 (402)
T ss_pred HhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHH----HcCcHHHHHH-HHHHHHHHHHHHHHHhcc
Confidence 34444456778888999999999999999999999999999999999 9999997776 4444454444321 21
Q ss_pred -cccccccCCCCCCcchHHHHHHHHHHh----hcccccccc-c--cccchhhHHhHHHHHHHHHHH-HHHhhhccccccc
Q 011056 122 -ADIGWLLGDRGDFRPRAIAVFVFGFWI----LDVANNMTQ-G--KDHRRTRVANAYFSLFMAVGN-ILGYATGSFSGWF 192 (494)
Q Consensus 122 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~--~~~~r~~~~~~~~~~~~~~g~-~~g~~~g~~~~~~ 192 (494)
+++ ....+.....++ ......... . ++++|++ +.++.....++|. .+++.+++.+
T Consensus 102 ~~~~------------~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~~g~~~~g~~~~~~l--- 165 (402)
T TIGR00897 102 HANY------------PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSS-AVGWFWAVYSIGIGVFGSYYSSYA--- 165 (402)
T ss_pred CccH------------HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 233 111222222221 111111111 1 6677776 9999999999996 5788876652
Q ss_pred ccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhc
Q 011056 193 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYF 272 (494)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (494)
.+.. +|+..++.......+..++..+..+|.+++++++ + +++ .++..++..+.+++
T Consensus 166 --~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~----~~~~~~~~~~~~~~- 221 (402)
T TIGR00897 166 --IPAF----------GEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ----T---REK----FSELGKAATILFTN- 221 (402)
T ss_pred --cccc----------chHHHHHHHHHHHHHHHHHHHhccCCCCCccccc----C---Ccc----hhhHHHHHHHHHcC-
Confidence 1110 3222222222222222333334445443211111 0 000 01111223345556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Q 011056 273 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF 352 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~ 352 (494)
|.++...+..++.....+....|.|.|+.+ ++.+..+ . ........++..+++++.|+++||++||+
T Consensus 222 -~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~~---------~-~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 288 (402)
T TIGR00897 222 -PNVLLGGMVRIINTIGLFGFAVFLPMFVAE--LGFSTSE---------W-LQIWGTFFFTNIVFNVIFGIVGDKLGWMN 288 (402)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCChhH---------H-HHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 777777777766666677777788877743 3322211 1 12233456778999999999999999888
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhh
Q 011056 353 IWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 431 (494)
Q Consensus 353 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 431 (494)
... .+.+..+++.+.+..... ....+.+...+...+.|++.+...+ ......|. ++ +++|+++
T Consensus 289 ~~~~~~~l~~~~~~~~l~~~~~------------~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~-~~--~~~g~~~ 352 (402)
T TIGR00897 289 TVRWFGGVGCGIFTLALYYIPQ------------HFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTL-AP--KHKGAAM 352 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------ccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-Cc--chhHHHH
Confidence 764 333333333333322210 0001344455566677777765543 34455554 44 6799999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 432 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 432 g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
|+.+....+++.++|.+.|.+.|..| +...+.+.+++.+++.++..+.
T Consensus 353 g~~~~~~~lg~~~gp~i~g~l~~~~g--~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 353 SVLNLSAGLSAFLAPAIAVLFIGFFG--AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999877 6777888888887777766654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=224.98 Aligned_cols=391 Identities=14% Similarity=0.129 Sum_probs=225.7
Q ss_pred HHHHHhHHHHHHHhCCC--------chhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 011056 48 ALQLSLLTPYVQELGIP--------HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (494)
Q Consensus 48 ~~~~~~l~~~~~~~g~s--------~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~ 119 (494)
......++....+++.+ ..+.+++.+++.++..+++++.|+++| |+||||.++. +.++..++.++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~~~~~-~~~~~~~~~~~~~ 119 (481)
T TIGR00879 45 GVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSD----RFGRKKSLLI-IALLFVIGAILMG 119 (481)
T ss_pred chhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhh----hhhhHHHHHH-HHHHHHHHHHHHH
Confidence 33444566666666666 899999999999999999999999999 9999887766 5555555666654
Q ss_pred hccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhc---ccccccc
Q 011056 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATG---SFSGWFK 193 (494)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g---~~~~~~~ 193 (494)
+.++.... ........+.+++.+........... ++++|++ +.++......+|..+++.++ ...
T Consensus 120 ~~~~~~~~-----~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~~~~~~~~~---- 189 (481)
T TIGR00879 120 LAAFALSV-----EMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGA-LTSLYQLAITFGILVAYGFGSGKVSL---- 189 (481)
T ss_pred Hhccccch-----HHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhh-hhhHHHHHHHHHHHHHHHHHHHhhcC----
Confidence 44332100 01112223333333332222222222 6677776 99999999999999999987 221
Q ss_pred cchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcc--------ccccchhh-h------
Q 011056 194 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE--------GHEQSSDV-H------ 258 (494)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--------~~~~~~~~-~------ 258 (494)
.. ..+||+.|.+.++..++. ++..+++||+|+....+++.++.+ +.+++.+. +
T Consensus 190 -~~----------~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (481)
T TIGR00879 190 -NN----------TLGWRIPLGLQLIPAGLL-FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELID 257 (481)
T ss_pred -CC----------CccHHHHHHHHHHHHHHH-HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 00 127999999865544443 444566788764211110000000 00000000 0
Q ss_pred ----------hhHHHHHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHH
Q 011056 259 ----------EAFLWELFGTFRYF-SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGL 327 (494)
Q Consensus 259 ----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (494)
+...++.++..++. ++.++..++..+...........|.+.+.. + ++.+. .......
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~----------~~~~~~~ 325 (481)
T TIGR00879 258 IKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-N-AGVST----------DHAFLVS 325 (481)
T ss_pred HHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-H-cCCCc----------hHHHHHH
Confidence 00011112111110 122222222222222222233334444442 2 22221 1122334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCC-CchHHHHHHHHHHHhhHhh
Q 011056 328 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPP-NGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 328 ~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~ 406 (494)
....+..+++.++.+++.||+|||+.+..+..+.+++++.+........+ +. .......+....+++.+.+
T Consensus 326 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 397 (481)
T TIGR00879 326 IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT--------GSSKSSGNVAIVFILLFIAFFA 397 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC--------CcccchhHHHHHHHHHHHHHHH
Confidence 44566788999999999999999999988888777777766533100000 00 0002222223333333333
Q ss_pred h-hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 407 I-TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 407 ~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
. ..+....++.|.+|+ +.+|+++|+.+....++++++|.+.+.+.+..+ +...|.+.++++++++++.+++.||+
T Consensus 398 ~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~i~~~~~~~~~ 473 (481)
T TIGR00879 398 MGWGPVPWVIVSEIFPL--SLRPKGISIAVAANWLANFIVGFLFPTMLESIG--VGGVFIFFGGLNVLGLIFVYFFLPET 473 (481)
T ss_pred ccccCeehhhhhccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ccceehhHHHHHHHHHHHHheecccC
Confidence 2 235666777999998 899999999999999999999999999999866 66677788888888877777777776
Q ss_pred CCCC
Q 011056 486 SAQK 489 (494)
Q Consensus 486 ~~~~ 489 (494)
++++
T Consensus 474 ~~~~ 477 (481)
T TIGR00879 474 KGRT 477 (481)
T ss_pred CCCC
Confidence 6543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=212.61 Aligned_cols=367 Identities=16% Similarity=0.138 Sum_probs=225.9
Q ss_pred CCCHHHHHHHHHhhhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHH
Q 011056 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (494)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~ 105 (494)
+.+.++.+.++...++..+.+....++++.|. +.+|+++.++|.+.++..+.+++.+|+.|+++||+++|+||||+++.
T Consensus 4 ~~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~ 83 (448)
T PRK09848 4 QLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLL 83 (448)
T ss_pred cccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHH
Confidence 45677888888888777777776666665555 56799999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHHHHHhhcc-ccccccCCCCCCcchH----HHHHHHHHHhhccccccccc----cccchhhHHhHHHHHHHH
Q 011056 106 CGAISIAVAVLLIGLSA-DIGWLLGDRGDFRPRA----IAVFVFGFWILDVANNMTQG----KDHRRTRVANAYFSLFMA 176 (494)
Q Consensus 106 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~ 176 (494)
.+.+...+...+....+ .... .....+ ..+..++........+.... ++++|.+ ..+....+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~-~~~~r~~~~~ 156 (448)
T PRK09848 84 FGTAPLMIFSVLVFWVPTDWSH------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRAR-LGAARGIAAS 156 (448)
T ss_pred HHHHHHHHHHHHHHhCcCCCCc------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHH-HHHHHHHHHH
Confidence 66554444444332222 1100 011111 11222233333433333322 4456655 5555544333
Q ss_pred -----HHHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccc
Q 011056 177 -----VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH 251 (494)
Q Consensus 177 -----~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 251 (494)
++..+++.++... + ......+.....+.+++..+..++.....||+++++.+
T Consensus 157 ~~~~~~~~~~~p~i~~~~------g-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~---------- 213 (448)
T PRK09848 157 LTFVCLAFLIGPSIKNSS------P-------EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA---------- 213 (448)
T ss_pred HHHHHHHHHHHHHHHHhC------C-------CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc----------
Confidence 3444444443221 0 00000121111222333333333444455665322110
Q ss_pred ccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHH
Q 011056 252 EQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNS 331 (494)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (494)
+....+++++.++| |.++..++..++.+.+........+.++ ++.++.++ ..+.+......
T Consensus 214 ------~~~~~~~~~~l~~n--~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~----------~~~~~~~~~~~ 274 (448)
T PRK09848 214 ------QPSLKISLQTLKRN--RPLFMLCIGALCVLISTFAVSASSLFYV-RYVLNDTG----------LFTVLVLVQNL 274 (448)
T ss_pred ------CCCHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHhhhheeeE-eeecCChH----------HHHHHHHHHHH
Confidence 01122234556677 7888777777776666555544444444 33333211 11222223234
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhc
Q 011056 332 VVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 411 (494)
Q Consensus 332 ~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 411 (494)
+..+++.++.+++.||+|+|+.+.++.++..++.+.+.+. +. .+.+...+...+.+++.+...+.
T Consensus 275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~--------------~~-~~~~~~~~~~~l~g~G~~~~~~~ 339 (448)
T PRK09848 275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV--------------SV-WSLPVALVALAIASIGQGVTMTV 339 (448)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--------------Cc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888999999999999999999988887777666543 21 13455556677788999988888
Q ss_pred hhhhHhhhcccC-----CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 412 PYALVSIRTESL-----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 412 ~~~~~~~~~~~~-----~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
..++.+|..|++ +|++|.++|+.++..++|+.+++.+.|.+.+..|
T Consensus 340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999988763 2457999999999999999999999999988766
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-25 Score=209.31 Aligned_cols=355 Identities=12% Similarity=0.112 Sum_probs=221.2
Q ss_pred HHHHHHHHhHHHH-HHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccc
Q 011056 45 FGWALQLSLLTPY-VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (494)
Q Consensus 45 ~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~ 123 (494)
.+.....++++.+ .+++|.|+.++|++.++..+...+.+++.|+++| |+||||.++. +.+...++.+.+.++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~d----r~g~k~~l~~-~~~~~~~~~~~~~~~~~ 98 (400)
T PRK11646 24 LGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIAD----RFGAKPMIVT-GMLMRAAGFATMAIAHE 98 (400)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHH----HhCchHHHHH-HHHHHHHHHHHHHHhcc
Confidence 3444555677665 5789999999999999999999999999999999 9999886655 66677777777777766
Q ss_pred cccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhc
Q 011056 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT 200 (494)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~ 200 (494)
.+.+ .....+.+++.+........... ++++|++ +.++.....++|..+|+.+++.+. .
T Consensus 99 ~~~l--------~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~g~~ig~~l~g~l~-----~---- 160 (400)
T PRK11646 99 PWLL--------WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR-FFSLLMMQDSAGAVIGALLGSWLL-----Q---- 160 (400)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-----H----
Confidence 5211 11112222222222222222222 5667776 999999999999999999988631 1
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHH
Q 011056 201 SACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIIL 280 (494)
Q Consensus 201 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (494)
.+|++.|++.+...++..++..+..||.+.. +. + ++..++..+.+++ ++++..+
T Consensus 161 -------~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~--~~-------~--------~~~~~~~~~~~~~--~~~~~~~ 214 (400)
T PRK11646 161 -------YDFRLVCATGAVLFVLAAAFNAWLLPAYKLS--TV-------R--------TPVREGMTRVLRD--KRFVTYV 214 (400)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHhCCccccc--cc-------c--------hhhHHHHHHHHcC--chHHHHH
Confidence 1789999988776666555544555543211 00 0 0011233444555 5555544
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHh-hhcchHHHHHHHH
Q 011056 281 IVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR-KWGAGFIWGISNI 359 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~g~~~~~~~~~~ 359 (494)
...+...........+.|.++.+.. + ++. ..+.+ ....++.........+++.| |++.++.+..+..
T Consensus 215 ~~~~~~~~~~~~~~~~~p~~~~~~~-~-~~~---------~~g~l-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 282 (400)
T PRK11646 215 LTLTGYYMLAVQVMLMLPIMVNDIA-G-SPS---------AVKWM-YAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLL 282 (400)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHhhc-C-Cch---------HHHHH-HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 4433333222223345666664322 1 111 11212 22233334444444455554 5666666667777
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHH
Q 011056 360 LMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIV 439 (494)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 439 (494)
+.+++..++...+ +.+...+...+.+++.+...+...+++.+..|+ +++|+++|+.+....
T Consensus 283 ~~~~~~~~l~~~~-----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~--~~~g~~~g~~~~~~~ 343 (400)
T PRK11646 283 IMSLSMFPIGMVS-----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADA--RARGSYMGFSRLGLA 343 (400)
T ss_pred HHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc--ccchhhhhHHHHHHH
Confidence 7777766555442 234444555667777777777888889999998 999999999999999
Q ss_pred HHHHHHhhhhhhhhhhcCC--CCcchHHHHHHHHHHHHHHHh
Q 011056 440 IPQIVVSMGSGPWDQLFGG--GNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 440 ~g~~l~~~~~g~l~~~~g~--~~~~~~~~~~~~~~i~~~~~~ 479 (494)
+|+.+||.++|.+.|..+. .....+...+++.+++.+...
T Consensus 344 ~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 344 LGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALY 385 (400)
T ss_pred HHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999998642 123445555555555554443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-24 Score=212.10 Aligned_cols=383 Identities=14% Similarity=0.082 Sum_probs=234.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceeccc-ccCCCCCcchhHHHHHHH
Q 011056 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR-CTSRFGRRRPFIVCGAIS 110 (494)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~-~~~r~Grr~~~l~~~~~~ 110 (494)
+.+.+....+...+........+|.+.++.|.|.+++|....+.. .. +.++++|+++|| ..+|+||||.++..+.+.
T Consensus 13 ~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~-~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~ 90 (491)
T PRK11010 13 NSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQ-AY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLL 90 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HH-HHHHHHHHHHHcccccCCCCchHHHHHHHHH
Confidence 344455555555566667777899999999999999999733333 32 688999999995 234459999988778887
Q ss_pred HHHHHHHHhhccccccccCCCCCCcchHHHHH----HHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHh
Q 011056 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVF----VFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGY 183 (494)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~ 183 (494)
.+++...+++.++. ... ...... .......+........ ++++|++ +.++...+..+|.++++
T Consensus 91 ~~~~~~~~a~~~~~--------~~l-~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~-~~~i~~~g~~lG~llg~ 160 (491)
T PRK11010 91 LLVAIAAMGFLEPG--------TQL-RWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGA-GAAISVLGYRLAMLVSG 160 (491)
T ss_pred HHHHHHHHHHcCCc--------chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH-HHHHHHHHHHHHHHHHH
Confidence 77777666565432 111 111111 1222222333333333 6677877 89999999999999998
Q ss_pred hhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHH
Q 011056 184 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 263 (494)
Q Consensus 184 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (494)
.++..+ .. ...+||..|++.++..++..+..+ ..||+++.++++ +. . ++...+
T Consensus 161 ~l~~~l-----~~---------~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~-------~~-~----~~~~~~ 213 (491)
T PRK11010 161 GLALWL-----AD---------RYLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVP-------KT-L----EQAVVA 213 (491)
T ss_pred HHHHHH-----Hh---------cccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccc-------cc-h----hhhHHH
Confidence 776542 11 002799999998877666544443 467764321100 00 0 011122
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 011056 264 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 343 (494)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 343 (494)
++.+.+++ ++.+......++...+......+.++++.++ ++.++. ..+.+......++.+++.++.|+
T Consensus 214 ~l~~~~~~--~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-~G~s~~---------~~g~~~~~~g~i~~iiG~ll~G~ 281 (491)
T PRK11010 214 PLRDFFGR--NNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-VGFDAG---------EVGLVNKTLGLLATIVGALYGGI 281 (491)
T ss_pred HHHHHHcC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444 4445444444444444444444556665432 232221 12222223345678899999999
Q ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccC
Q 011056 344 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 423 (494)
Q Consensus 344 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 423 (494)
+.||+|+|+.+.++.++.++..+.+...... .+ +.+.+.....+..++.+...+..+++..+.+++
T Consensus 282 L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-----------~~--~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~- 347 (491)
T PRK11010 282 LMQRLSLFRALMIFGILQGVSNAGYWLLSIT-----------DK--NLYSMGAAVFFENLCGGMGTAAFVALLMTLCNK- 347 (491)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-----------cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 9999999888776665555544333222100 10 233333344444444444445567888888888
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcc
Q 011056 424 GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 482 (494)
Q Consensus 424 ~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (494)
+..++.+|+.+....+|..+++.+.|.+.|..| +...|.+.+++++++.+...+.+
T Consensus 348 -~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G--~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 348 -SFSATQFALLSALSAVGRVYVGPVAGWFVEAHG--WPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999877 66678888888887776665543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-24 Score=205.31 Aligned_cols=356 Identities=11% Similarity=0.056 Sum_probs=211.9
Q ss_pred hHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 011056 41 GGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (494)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~ 119 (494)
+...+......+.++.+. +++|.|++++|++.+...+...+.+++.|.++| |+||||.++..+.+...++..+..
T Consensus 25 ~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~d----r~g~r~~~~~~~~~~~~~~~~~~~ 100 (393)
T PRK15011 25 FLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSD----KRGDRKSLIVFCCLLGVLACTLFA 100 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccchhHHHHHHHHHHHHHHHHHH
Confidence 333355555667777765 779999999999988777766655556555599 999999877656666556666666
Q ss_pred hccccccccCCCCCCcchHHHHHHHHHHhhccccccc-cc------cccchh-hHHhHHHHHHHHHHHHHHhhhcccccc
Q 011056 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMT-QG------KDHRRT-RVANAYFSLFMAVGNILGYATGSFSGW 191 (494)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~r~-~~~~~~~~~~~~~g~~~g~~~g~~~~~ 191 (494)
++++++ ...+.+...+......... .. ++++|. ....+......++|.++|+.+++.+
T Consensus 101 ~~~~~~------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l-- 166 (393)
T PRK15011 101 WNRNYF------------VLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYAL-- 166 (393)
T ss_pred HhhHHH------------HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHH--
Confidence 766652 2122222222221111111 11 112121 1133677778889999999998763
Q ss_pred cccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhh
Q 011056 192 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRY 271 (494)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (494)
... .+||..|++.++..++..++.+...||.+++++++. + + . + +. ++
T Consensus 167 ---~~~----------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~------~----~~----~~ 213 (393)
T PRK15011 167 ---AMG----------FSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT---G--T-L------E----AP----RR 213 (393)
T ss_pred ---HHh----------cChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc---c--c-c------c----cc----cc
Confidence 111 179999999887777776666667787653322110 0 0 0 0 00 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 011056 272 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG 351 (494)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~ 351 (494)
.++..+.........+.....+..+.+.|+.++ ++.++. ..+ .......+..+++.++.|++.||+|+|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~~~~~~---------~~g-~~~~~~~~~~i~~~~~~G~l~dr~g~~ 282 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINE-LHLPEK---------LAG-VMMGTAAGLEIPTMLIAGYFAKRLGKR 282 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH---------HHH-HHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 112223333333333333333444566666433 232221 112 222334455678889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhh
Q 011056 352 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 431 (494)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 431 (494)
+.+..+.....+.+......+ +.+..+....+.+++.+...+.......|..| +++|++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p---~~~g~~~ 342 (393)
T PRK15011 283 FLMRVAAVAGVCFYAGMLMAH-----------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMP---GQAGSAT 342 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCcchHH
Confidence 987766555444433332221 23334444445555555555555566778777 4589999
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 432 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 432 g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
++.+....+|..++|.++|.+.|..| +...+.+.+++.+++.+..++
T Consensus 343 ~~~~~~~~lg~~~g~~l~G~i~~~~g--~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 343 TLYTNTSRVGWIIAGSLAGIVAEIWN--YHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999876 666777777776666655543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-24 Score=209.15 Aligned_cols=376 Identities=11% Similarity=0.032 Sum_probs=202.4
Q ss_pred HHHHHHHHhHHHHHHHhC---CCchhHH---HHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHH
Q 011056 45 FGWALQLSLLTPYVQELG---IPHAWAS---IIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g---~s~~~~g---~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~ 118 (494)
++........|.+.++++ .+..+.+ .+.+...++..++++++|+++| |+||||.++. +.+...++.+++
T Consensus 36 ~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~D----r~Grr~~l~~-~~~~~~~~~~~~ 110 (432)
T PRK10406 36 FDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIAD----KHGRKKSMLI-SVCMMCFGSLVI 110 (432)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHH-HHHHHHHHHHHH
Confidence 455555555666778874 4555433 3444555666699999999999 9999997666 777777788888
Q ss_pred hhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccc
Q 011056 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 195 (494)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~ 195 (494)
++++++.+.-..........+.+.+++.+........... ++++|++ ..+........|..+++.++.... ...
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~-~~~~~~~~~~~G~~~~~~~~~~~~--~~~ 187 (432)
T PRK10406 111 ACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF-YASFQYVTLIGGQLLALLVVVVLQ--QTL 187 (432)
T ss_pred hhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHH--HhC
Confidence 7887762100000000011112222222221111111212 6677776 778777777778777776543311 000
Q ss_pred hhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHH
Q 011056 196 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGT 275 (494)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (494)
+ +. .....+||+.|++.++..++. ++.....||++++++++ .+ ++.++++ .+++ ++
T Consensus 188 ~---~~--~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~~~~---------~~----~~~~~~~---l~~~--~~ 243 (432)
T PRK10406 188 E---DA--ELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQQETRA---------LK----EAGSLKG---LWRN--RR 243 (432)
T ss_pred C---HH--HHhccchHHHHHHHHHHHHHH-HHHHhcCCCCchHHHhh---------hc----ccccHHH---HHhh--HH
Confidence 0 00 001238999999877665544 33334566654321110 00 1112333 3444 55
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 011056 276 IWIILIVTAL-TWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 354 (494)
Q Consensus 276 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~ 354 (494)
.+..++...+ ....++.+..|.+.++.+. ++.+. ...........+...++.++.|+++||++||+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-~g~s~----------~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~ 312 (432)
T PRK10406 244 AFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-AGMHA----------NVASGIMTAALFVFMLIQPLIGALSDKIGRRTSM 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 5555444333 2455666677888887543 22111 1111223334455677788889999999999987
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 355 GISNILMALCFLAMLI-LYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 355 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
..+..+.++....+.. .. .. .+....+....+..+..+...+....+.+|.+|+ +.|++++|+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~--~~r~t~~g~ 376 (432)
T PRK10406 313 LCFGSLAALFTVPILSALQ-------------NV-SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPA--QVRALGVGL 376 (432)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------cC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CccchhhhH
Confidence 6665544333322221 11 00 0122222222222233333334566778999999 999999999
Q ss_pred HHHHHHH-HHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 434 LNLAIVI-PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 434 ~~~~~~~-g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
.+....+ .....|.+.+.+ +..| .+...++..++..+++.+..++.
T Consensus 377 ~~~~g~~~~g~~~p~~~~~l-~~~g-~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 377 SYAVANALFGGSAEYVALSL-KSIG-METAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHhHHHHHHHHH-HHhC-CCcHHHHHHHHHHHHHHHHHHHh
Confidence 8876554 344577777744 5544 23344555556666665555543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-25 Score=215.36 Aligned_cols=384 Identities=13% Similarity=0.050 Sum_probs=234.7
Q ss_pred HHHHHHHHHhhhHHHHHHH-HHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHH
Q 011056 30 LRKLLKVASVAGGIQFGWA-LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (494)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~ 108 (494)
.|.++..++......+.+. ....+++.+.+++|.+.++.+++.+.+.+...++.|+.|+++| |+|||+.++. +.
T Consensus 17 ~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~ 91 (455)
T TIGR00892 17 GWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVN----RFGCRPVVIA-GG 91 (455)
T ss_pred chHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHH----HcCchHHHHh-hH
Confidence 3444444443333322221 1344678889999999999999999999999999999999999 9999886665 56
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCcch-HHHHHHHHHHhhccccccccc--cccchhhHHhHHHHHHHHHHHHHHhhh
Q 011056 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPR-AIAVFVFGFWILDVANNMTQG--KDHRRTRVANAYFSLFMAVGNILGYAT 185 (494)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~g~~~g~~~ 185 (494)
+...++.+.++++++++.+ .. ...+.+++.+........... .+++|++ +.++...+..+|..+++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~l--------~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~-a~g~~~~~~~~g~~~~~~l 162 (455)
T TIGR00892 92 LLASLGMILASFSSNVIEL--------YLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPL-ANGLAMAGSPVFLSTLAPL 162 (455)
T ss_pred HHHHHHHHHHHHhhhHHHH--------HHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHH-HHHHHHhcccHHHHHHHHH
Confidence 6666677777777776211 00 011112222211111111111 4466776 9999999999999999888
Q ss_pred cccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCC--CCCccccccch---hhhhh
Q 011056 186 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSA--PFSEEGHEQSS---DVHEA 260 (494)
Q Consensus 186 g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~---~~~~~ 260 (494)
++.+ ... .+||+.|++.+++.++..+..++..++.+.++..+.+ +..+++...++ .....
T Consensus 163 ~~~l-----~~~----------~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (455)
T TIGR00892 163 NQYL-----FES----------FGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAE 227 (455)
T ss_pred HHHH-----HHH----------hChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhh
Confidence 6652 111 1799999998877665554444443332211100000 00000000000 00001
Q ss_pred HHHHH--HHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHH
Q 011056 261 FLWEL--FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 338 (494)
Q Consensus 261 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 338 (494)
..++. .+.+++ |.++..+...++...+......+.+.|..+ .+.+. ..........+++.++++
T Consensus 228 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~g~s~----------~~~g~~~~~~~~~~~~~~ 293 (455)
T TIGR00892 228 KINRFLDFSLFTH--RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD--KGVDE----------YEAAFLLSIIGFVDIFAR 293 (455)
T ss_pred hhhhhcchHHhcC--chHHHHHHHHHHHHHHccchHHHHHHHHHH--cCCCH----------HHHHHHHHHHHHHHHHHH
Confidence 11111 245566 777777776666666666666677777642 22221 112233444677788888
Q ss_pred HHHHHHHhhh--cchHHHHH--HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhh
Q 011056 339 VLMEKLCRKW--GAGFIWGI--SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 414 (494)
Q Consensus 339 ~~~g~l~dr~--g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 414 (494)
++.+++.||. ++|+...+ +.++.+++.++..... +.+.+++...+.|++.+...+...+
T Consensus 294 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~-----------------~~~~~~i~~~~~G~~~g~~~~~~~~ 356 (455)
T TIGR00892 294 PSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG-----------------DYTGLVIYCIFFGLSFGSVGALLFE 356 (455)
T ss_pred HHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc-----------------hHHHHHHHHHHHHHHhchHHHHHHH
Confidence 9999999973 33433332 2233333333332221 3555666778888988888888889
Q ss_pred hHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHH
Q 011056 415 LVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGL 476 (494)
Q Consensus 415 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~ 476 (494)
++.|.+|+ +++|+.+|+.+....+|++++|.+.|.+.|..+ ++...|.+.+++.+++.+
T Consensus 357 ~~~~~~~~--~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g-~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 357 VLMDLVGA--QRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK-NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHhhH--HHHhhHHhHHHHHHHHHHHccccceeeeehhcC-CcchHHHHhhHHHHHHHH
Confidence 99999998 899999999999999999999999999999875 355666666665555544
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=221.51 Aligned_cols=401 Identities=16% Similarity=0.126 Sum_probs=223.2
Q ss_pred HHHHHHHHhHHHHHHHh--------CCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHH
Q 011056 45 FGWALQLSLLTPYVQEL--------GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~ 116 (494)
++.....+..+.+.+++ +.++.+.+++.+++.++..+++++.|+++| |+||||.+++ +.++.+++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~d----r~Grr~~~~~-~~~l~~i~~~ 100 (479)
T PRK10077 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKI-AAVLFFISAL 100 (479)
T ss_pred cccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHH-HHHHHHHHHH
Confidence 44444445556666655 888999999999999999999999999999 9999998776 4555555655
Q ss_pred HHhhccccccccCCCCCC----cchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccc
Q 011056 117 LIGLSADIGWLLGDRGDF----RPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFS 189 (494)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~ 189 (494)
..+++.-.-......+.. ....+.+.+++.+........... ++++|++ +.+..+....+|..+++.++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~-~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 101 GSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGK-LVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred HHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 554421000000000000 011222223333332222222222 6777887 99999999999998887776542
Q ss_pred cccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccc---cccchhhhhhHHHHHH
Q 011056 190 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG---HEQSSDVHEAFLWELF 266 (494)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 266 (494)
.. ...... ....+||+.|++.++..++..+ ..+++||+|++...+++.++.++ ......+.+...++..
T Consensus 180 ~~-----~~~~~~--~~~~gWr~~f~~~~~~~~~~~~-~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (479)
T PRK10077 180 AR-----SGDASW--LNTDGWRYMFASEAIPALLFLM-LLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIK 251 (479)
T ss_pred hc-----cCcccc--cccCChHHHHHHHHHHHHHHHH-HHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 10 000000 0113799999988776666544 45678888754211111100000 0000000111112222
Q ss_pred HHhhhc---hHHHHHHH---HH------HHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHH
Q 011056 267 GTFRYF---SGTIWIIL---IV------TALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 334 (494)
Q Consensus 267 ~~~~~~---~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (494)
+..++. .+..+... .. .+....+......|.+.+.. + .+.+. ....+.....++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~-~g~~~----------~~~~~~~~~~~~~~ 319 (479)
T PRK10077 252 HSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFK-T-LGAST----------DIALLQTIIVGVIN 319 (479)
T ss_pred HHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH-H-cCCCC----------chHHHHHHHHHHHH
Confidence 222110 01111110 00 00111111222223343332 2 22111 11123334456678
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhh-hhchh
Q 011056 335 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT-YSVPY 413 (494)
Q Consensus 335 ~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~ 413 (494)
+++.++.++++||+|||++++.+..+.+++.+++..... +.. ..........+++++.+.. .+..+
T Consensus 320 ~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (479)
T PRK10077 320 LTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------------TQA-PGIVALLSMLFYVAAFAMSWGPVCW 386 (479)
T ss_pred HHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh------------cCc-ccHHHHHHHHHHHHHHhccccchhH
Confidence 899999999999999999999999888888777665420 110 1122233344444444432 35678
Q ss_pred hhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhh------hhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCC
Q 011056 414 ALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD------QLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 487 (494)
Q Consensus 414 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~------~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 487 (494)
.+++|.+|+ ++||++.|+.+....+++++++.+.+.+. +..+ ....|.+.++.++++.++.+++.||+|+
T Consensus 387 ~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 387 VLLSEIFPN--AIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH--NGFSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred HHhHhhCCh--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc--CccHHHHHHHHHHHHHHHHHhccccCCC
Confidence 899999998 99999999999999999999877766444 4444 4556777777777777766666677665
Q ss_pred C
Q 011056 488 Q 488 (494)
Q Consensus 488 ~ 488 (494)
+
T Consensus 463 ~ 463 (479)
T PRK10077 463 K 463 (479)
T ss_pred C
Confidence 3
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-25 Score=218.58 Aligned_cols=412 Identities=12% Similarity=-0.029 Sum_probs=224.1
Q ss_pred HHHHHHHHHhHHHHHHH-----hCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHH
Q 011056 44 QFGWALQLSLLTPYVQE-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (494)
Q Consensus 44 ~~~~~~~~~~l~~~~~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~ 118 (494)
.+.........+.+.++ .+.++.+.+++.+...++..+++++.|+++| |+|||+.++. +.+...++.++.
T Consensus 29 g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d----~~Grr~~~~~-~~~~~~v~~~~~ 103 (502)
T TIGR00887 29 SYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLAD----KLGRKRVYGM-ELIIMIIATVAS 103 (502)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccHHHHHH-HHHHHHHHHHHH
Confidence 34444444455655443 2345667889999999999999999999999 9999887766 555556566666
Q ss_pred hhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccc
Q 011056 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 195 (494)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~ 195 (494)
+++++...... .......+.+.+++.+........... ++++|++ +.++......+|..+++.++....
T Consensus 104 ~~~~~~~~~~~--~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~-~~~~~~~~~~~g~~~g~~~~~~~~----- 175 (502)
T TIGR00887 104 GLSPGSSPKSV--MATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGA-MMAAVFAMQGFGILAGAIVALIVL----- 175 (502)
T ss_pred HHccCcccchH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHH-HHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 66554200000 000111222222222222222222222 7788887 999999999999999988865421
Q ss_pred hhhhccc-------------ccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC---------------C
Q 011056 196 PFTLTSA-------------CNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF---------------S 247 (494)
Q Consensus 196 ~~~~~~~-------------~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---------------~ 247 (494)
+...... ......+||+.|.+.++..++. .+..+++||+|++...+++++ +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~ 254 (502)
T TIGR00887 176 AGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIE 254 (502)
T ss_pred HHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccc
Confidence 1000000 0011237999997776655443 444577899987521111100 0
Q ss_pred ccccc-c----chhhhhhHHHHHHHHhhhchHHHHHH----HHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCcc--c
Q 011056 248 EEGHE-Q----SSDVHEAFLWELFGTFRYFSGTIWII----LIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN--Y 316 (494)
Q Consensus 248 ~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 316 (494)
++.++ + +++..+..++++++..+. ++.+.. ....+.....++....|.|.++.+. +.++..... +
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~--G~~~~~~~~~~~ 330 (502)
T TIGR00887 255 AEPDEVEKASTAVEVPKASWSDFFTHFFK--WRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAI--GYSPPAATNNAY 330 (502)
T ss_pred cCcccccchhccccchhhhHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHH--cCCCCccchhHH
Confidence 00000 0 000011234444332111 221111 1222222233344445566666432 222211000 0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHH
Q 011056 317 ATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALI 396 (494)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (494)
...............++.+++.++.++++||+|||++++.+..+.++++.++..... +.. .......
T Consensus 331 ~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~------------~~~-~~~~~~~ 397 (502)
T TIGR00887 331 EELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN------------HLS-THGFLAI 397 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH------------hcc-hhHHHHH
Confidence 000000001122334556778899999999999999998888777777766654320 000 1111111
Q ss_pred HHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC--------CCCcchHHHHH
Q 011056 397 IFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG--------GGNSPAFAVGG 468 (494)
Q Consensus 397 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g--------~~~~~~~~~~~ 468 (494)
......+......+..+.+..|.+|+ +.|+++.|+.+....++.+++|.+.+.+.+..+ .+....+.+.+
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~E~~p~--~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 475 (502)
T TIGR00887 398 YVLAQFFANFGPNATTFIVPGEVFPT--RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFA 475 (502)
T ss_pred HHHHHHHHhcCCCchhhhhhhccCch--hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHH
Confidence 11111111122335667778999999 999999999999999999999999999988532 11234567777
Q ss_pred HHHHHHHHHHhhcccCCCCCC
Q 011056 469 ISALAGGLIAILAIPRSSAQK 489 (494)
Q Consensus 469 ~~~~i~~~~~~~~~~~~~~~~ 489 (494)
++++++.+.. ++.||+++++
T Consensus 476 ~~~~~~~i~~-~~lpEt~~~~ 495 (502)
T TIGR00887 476 LFMFLGILFT-LLIPETKGKS 495 (502)
T ss_pred HHHHHHHHHh-eEeccCCCCC
Confidence 7777666544 5668877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=211.30 Aligned_cols=372 Identities=14% Similarity=0.105 Sum_probs=219.0
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCc
Q 011056 56 PYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFR 135 (494)
Q Consensus 56 ~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (494)
++.+++|+|+++.+++.+++.++..+++++.|+++| |+|||+.++. +.++.+++.+.....++. ...
T Consensus 51 p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~ 117 (438)
T TIGR00712 51 PYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILSAAVMLLMGFVPWA--------TSS 117 (438)
T ss_pred HHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhh----ccCCceehHH-HHHHHHHHHHHHhccccc--------cch
Confidence 344557999999999999999999999999999999 9999886665 555666666655444321 000
Q ss_pred chHHHHHHHHHHhh----ccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhccccccccc
Q 011056 136 PRAIAVFVFGFWIL----DVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCA 208 (494)
Q Consensus 136 ~~~~~~~~~~~~~~----~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 208 (494)
.....+.....+.. ......... ++++|++ +.++.+...++|..+++.+.+.. ... ..
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~-~~~~~~~~~~~g~~~~~~l~~~~-----~~~---------~~ 182 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGT-IVSIWNCAHNIGGGIPPLLVLLG-----MAW---------FN 182 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchh-HHHHHHHHHHhHhHHHHHHHHHH-----HHH---------hh
Confidence 11111211212211 111111111 6677877 99999999999988887764421 000 02
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCC--CCCc-cccccchhhhhhHHHHHH--HHhhhchHHHHHHHHHH
Q 011056 209 NLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSA--PFSE-EGHEQSSDVHEAFLWELF--GTFRYFSGTIWIILIVT 283 (494)
Q Consensus 209 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 283 (494)
+||+.|++.++..++..++.++.+||+|++...++. .+.+ +++..++.+.+...++.. +.+++ +.+|...+..
T Consensus 183 ~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 260 (438)
T TIGR00712 183 DWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPN--KLLWYIAIAN 260 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccC--chHHHHHHHH
Confidence 799999998887777666666777876643211100 0000 000000000111112211 24455 7777777766
Q ss_pred HHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Q 011056 284 ALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMAL 363 (494)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~ 363 (494)
++.....+....|.|.|+.+. .+.++.+ ..+......+.++++.++.+++.||+++++....+.....+
T Consensus 261 ~~~~~~~~~~~~~~p~~l~~~-~g~s~~~----------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~ 329 (438)
T TIGR00712 261 VFVYLLRYGVLDWSPTYLKEV-KHFALDK----------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTL 329 (438)
T ss_pred HHHHHHHHHHHHhHHHHHHHc-cCCChhh----------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHH
Confidence 666666667777888888642 2322211 12334445677889999999999999644322223222211
Q ss_pred HHH--HHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHH
Q 011056 364 CFL--AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIP 441 (494)
Q Consensus 364 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 441 (494)
..+ ...... +.. +.+......+..|++.............|.+|+ +.+|+++|+.+....++
T Consensus 330 ~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g 393 (438)
T TIGR00712 330 VTIAVIVYWMN-------------PAG-NPLVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGLFGYLG 393 (438)
T ss_pred HHHHHHHHHhc-------------CCC-chHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh--hheeeehhhhchHHHhh
Confidence 111 111111 110 122222333333433222111223456788888 89999999999888876
Q ss_pred -HHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCC
Q 011056 442 -QIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 486 (494)
Q Consensus 442 -~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 486 (494)
.+++|.+.|.+.|..| +...+.+..++.+++.+..+..++|+|
T Consensus 394 g~~~gp~l~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 394 GSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhhcchhHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4689999999999877 777787777777777777777777655
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-24 Score=209.54 Aligned_cols=384 Identities=13% Similarity=0.084 Sum_probs=213.9
Q ss_pred HHHHHHHHhHHHHH-HHh--CCCchhHHHHH-----HHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHH
Q 011056 45 FGWALQLSLLTPYV-QEL--GIPHAWASIIW-----LCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (494)
Q Consensus 45 ~~~~~~~~~l~~~~-~~~--g~s~~~~g~~~-----~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~ 116 (494)
++........+.+. +++ +.++. .+++. ++..++..+++++.|+++| |+||||.++. +.+...++.+
T Consensus 36 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~D----r~Grr~~l~~-~~~~~~~~~~ 109 (438)
T PRK09952 36 YDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGD----RLGRKRMLML-TVWMMGIATA 109 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH----hhccHHHHHH-HHHHHHHHHH
Confidence 33444433445443 555 67766 45553 3455667788899999999 9999997766 7777888888
Q ss_pred HHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccc
Q 011056 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 193 (494)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~ 193 (494)
++++++++...-..........+.+.+++.+........... ++++|++ ..+....+..+|..++..+...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~-~~~~~~~g~~~G~~l~~~~~~~l---- 184 (438)
T PRK09952 110 LIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAF-YSSGVQVGYGVGLLLSTGLVSLI---- 184 (438)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHH----
Confidence 888988862100000000001112222222221111111111 6667766 77788888888888776654331
Q ss_pred cchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhch
Q 011056 194 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS 273 (494)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (494)
....... .....+||+.|++.++..++. +......||+|+..+++.+.+ +.++ +.+..+. ..++
T Consensus 185 -~~~~~~~--~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~---~~~~----~~~~~~~---l~~~-- 248 (438)
T PRK09952 185 -SMMTTDE--QFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQA---AAKK----RIPVIEA---LLRH-- 248 (438)
T ss_pred -HHhCCHH--HhhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcc---cccc----cCCHHHH---HHHc--
Confidence 0000000 001138999999887655433 333345677654322110000 0000 1111111 2233
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Q 011056 274 GTIWIIL-IVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF 352 (494)
Q Consensus 274 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~ 352 (494)
++.+... ...++.....+....|.+.|+.++ ++.+. . ..... ....++..+++.++.|+++||+|||+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~g~s~--------~-~~~~~-~~~~g~~~~i~~~~~g~l~Dr~grr~ 317 (438)
T PRK09952 249 PGAFLKIIALRLCELLTMYIVTAFALNYSTQN-LGLPR--------E-LFLNI-GLLVGGLSCLTIPCFAWLADRFGRRR 317 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH--------H-HHHHH-HHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 3333333 334444455555666777777533 22111 1 01111 22345566788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhh
Q 011056 353 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 432 (494)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 432 (494)
.+..+.++..++...+.... ......+..+....+.+++.+...+..++++.|.+|. +.|+++.|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~--~~r~tg~g 382 (438)
T PRK09952 318 VYITGALIGTLSAFPFFMAL-------------EAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA--SYRYSGAG 382 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc--chhHHHHh
Confidence 88877666555443332221 0000233334445556777777777788999999999 88888888
Q ss_pred HHHHH-HHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 433 VLNLA-IVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 433 ~~~~~-~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
+.+.. ..+++.++|.+.+++.+..++++...+...+++.+++.+..+..
T Consensus 383 ~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 383 VGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 85544 55899999999999998765445556666667777776665543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=209.70 Aligned_cols=380 Identities=11% Similarity=0.071 Sum_probs=233.0
Q ss_pred HHHhhhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHH
Q 011056 36 VASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (494)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~ 114 (494)
++...+.....+++..+.++.+. +++|+|.+++|++.++..++..++++++|+++| |+||||..+..+.+...++
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~d----r~g~~r~~~~~~~~~~~~~ 82 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIAD----KWLSAQKVYAVCHFAGALL 82 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccHHHHHHHHHHHHHH
Confidence 34444555556777777777666 669999999999999999999999999999999 9977565555566666666
Q ss_pred HHHHhhccccccccCCCCCCcchHHHHHHHHHHhhcc----cccccc-----------ccccchhhHHhHHHHHHHHHHH
Q 011056 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV----ANNMTQ-----------GKDHRRTRVANAYFSLFMAVGN 179 (494)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----------~~~~~r~~~~~~~~~~~~~~g~ 179 (494)
.....+.+++. .........++... ..+... ..+..|.| ..| .+|.
T Consensus 83 ~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r-~~G------~lG~ 143 (418)
T TIGR00889 83 LFFAAQVTTPA------------GMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIR-VMG------TIGF 143 (418)
T ss_pred HHHHHHhcCHH------------HHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCee-eeh------hHHH
Confidence 66666666552 11122222222111 111010 01122322 333 3566
Q ss_pred HHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhh
Q 011056 180 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 259 (494)
Q Consensus 180 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (494)
.+|+.+++.... . ..|. .|++.+++.++..+. .+.+||+|+.++++ + .+ . ++
T Consensus 144 ~ig~~l~g~l~~---~------------~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~-------~-~~-~--~~ 195 (418)
T TIGR00889 144 IAAMWAVSLLDI---E------------LSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTA-------K-MS-I--KV 195 (418)
T ss_pred HHHHHHHHHhcc---c------------chhH-HHHHHHHHHHHHHHH-HhcCCCCCCCcccc-------c-cC-H--HH
Confidence 777766654210 0 0232 355555555554443 45677765322111 0 00 0 01
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHH
Q 011056 260 AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 339 (494)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 339 (494)
....+..+.+|+ |+++.+.+..++..........|.+.++.+ .+.++....++ ..+..........+..+++.+
T Consensus 196 ~~~~~~~~~~k~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~--~~~~~g~~~~~~~i~~i~~~~ 269 (418)
T TIGR00889 196 MLGLDAFILFKN--KRMAIFFFFSMLLGAPLQITNIFGNGFLHE--FGRNPEFADSF--VVKNASIWMSLSQFSEIFFIL 269 (418)
T ss_pred HhhhhHHHHhcC--CCeeeHHHHHHHHHhHHHHHHHhHHHHHHH--hcccccccchh--hhhhHHHHHHHHHHHHHHHHH
Confidence 001122344556 666666666666555444455566666643 22121110001 111222334556677888899
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhh
Q 011056 340 LMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 419 (494)
Q Consensus 340 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 419 (494)
+.+++.||+|+|+++..+.++.++++.++.... +...+.+.+++..++.|++.+...+....++.|.
T Consensus 270 ~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~-------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~ 336 (418)
T TIGR00889 270 TIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD-------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKE 336 (418)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888877766655531 1100234455667778888887777778889999
Q ss_pred cccCCCCcchhhhHHH-HHHHHHHHHHhhhhhhhhhhcCC----CCcchHHHHHHHHHHHHHHHhhcccCCCC
Q 011056 420 TESLGLGQGLSLGVLN-LAIVIPQIVVSMGSGPWDQLFGG----GNSPAFAVGGISALAGGLIAILAIPRSSA 487 (494)
Q Consensus 420 ~~~~~~~~g~~~g~~~-~~~~~g~~l~~~~~g~l~~~~g~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 487 (494)
+|+ +++|+++|+.+ ....+|.++||.++|.+.|..|. ++...|.+.+++.++++++.+++.+++++
T Consensus 337 ~p~--~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 337 VPV--HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred CCH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 998 99999999997 57889999999999999998762 35567888888877777777776666554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-25 Score=197.43 Aligned_cols=385 Identities=14% Similarity=0.124 Sum_probs=269.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHH
Q 011056 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (494)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~ 109 (494)
++.++............+.+..+..+.+.+++|+|+.|.+++.++..+.+++...+.|.+.| |+|.||..++ +.+
T Consensus 13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~d----rfGgR~~~~~-s~~ 87 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTD----RFGGRKWTIL-SML 87 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhc----ccCchHHHHH-HHH
Confidence 44444433333333345666666777778999999999999999999999999999999999 9999997766 556
Q ss_pred HHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc------cccchhhHHhHHHHHHHHHHHHHHh
Q 011056 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG------KDHRRTRVANAYFSLFMAVGNILGY 183 (494)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~~g~~~g~ 183 (494)
..++-.+..+++... ... ...+..++..++.+......++ |+++++. ++|+.. ..|+|..+..
T Consensus 88 l~~IP~~~~~~a~~~--------~~~-~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~-AlGI~g-~GN~G~av~q 156 (417)
T COG2223 88 LLLIPCLGLAFAVTY--------PST-WQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGL-ALGIAG-AGNLGVAVAQ 156 (417)
T ss_pred HHHHHHHHHHHHccC--------Cch-HHHHHHHHHHhcccceehcccccccccCChhhhhH-HHHHhc-cccccHHHHH
Confidence 666666666666554 111 2334444444444333333333 7777776 999998 8788887766
Q ss_pred hhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHH
Q 011056 184 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 263 (494)
Q Consensus 184 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (494)
.++-. .....+. ..|+....+..+..++..+..++..+|.|+.+...++ ..+ .
T Consensus 157 ~~~P~---------v~~~~g~---~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~-------------~~~--~ 209 (417)
T COG2223 157 LVAPL---------VAVAFGF---LAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP-------------QLP--A 209 (417)
T ss_pred HHHHH---------HHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc-------------cch--h
Confidence 55432 1111000 0278888888888888778888888887764222100 010 3
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 011056 264 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 343 (494)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 343 (494)
+++...++ ++.|.+++.++.++-++..+..+++.|+. +.|+.++.. .+.+ .......+.+.++++|+
T Consensus 210 ~~~~v~~~--~~~W~lsllY~~tFG~Fvgfs~~l~~~~~-~~fg~~~~~---------Ag~~-a~~f~~~g~l~Rp~GG~ 276 (417)
T COG2223 210 QLKAVFSN--KDTWLLSLLYFATFGGFVGFSAYLPMYLV-TQFGLSPVT---------AGLI-AFLFPLIGALARPLGGW 276 (417)
T ss_pred HHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhh---------HHHH-HHHHHHHHHHHHhccch
Confidence 44555567 89999999999999999999999999985 556655533 1222 33356667888999999
Q ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccC
Q 011056 344 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 423 (494)
Q Consensus 344 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 423 (494)
++||+|.+|+.......++++..+.........+ ..+....+...+..++..+......+.++...+|
T Consensus 277 LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-- 344 (417)
T COG2223 277 LSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH----------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-- 344 (417)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHcccccccc----------CcchHHHHHHHHHHHHHhccCcchheeechHHHH--
Confidence 9999999999988888888888777665210000 1234555555556666666666677788888888
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 424 GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 424 ~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
++.|...|+....+.+|++.-|...|...+..| .+...|.+...+.+++.+..+....+
T Consensus 345 -~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 345 -KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred -hhhhHHHHHHHHhccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999999987 56677888888888887766655433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-24 Score=203.68 Aligned_cols=332 Identities=15% Similarity=0.054 Sum_probs=203.3
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
.+.....+.+|.+.+++|.|+.+.+++.+++.++..+++|+.|+++| |+||||.++. +.+...++..+...+++.
T Consensus 17 ~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D----r~g~r~~l~~-~~~~~~i~~~~~~~~~~~ 91 (392)
T PRK10473 17 AGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIAD----RSGRKPVAIP-GAALFIIASLLCSLAETS 91 (392)
T ss_pred HHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHH----HhCChHHHHH-HHHHHHHHHHHHHHhCcH
Confidence 45556667899999999999999999999999999999999999999 9999886665 666667777777777765
Q ss_pred ccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcc
Q 011056 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 201 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~ 201 (494)
..+ .....+.+++.+........... ++++|.+ ..+.......+|..+++.+++... .
T Consensus 92 ~~~--------~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~i~~~~~~~i~~~l~-----~----- 152 (392)
T PRK10473 92 SLF--------LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAK-VLSLLNGITCIIPVLAPVLGHLIM-----L----- 152 (392)
T ss_pred HHH--------HHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-----h-----
Confidence 211 11112222222221111111212 6677776 889998888899899988876521 0
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHH
Q 011056 202 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI 281 (494)
Q Consensus 202 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (494)
..+|++.|++.+++.++..++.....||++++++++ + ....++..+.+++ ++++...+
T Consensus 153 -----~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~--~~~~~~~~ 210 (392)
T PRK10473 153 -----KFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPA-------A--------SSKPRENSESLLN--RFFLSRLV 210 (392)
T ss_pred -----CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC-------c--------cchHHHHHHHHhC--HHHHHHHH
Confidence 017899998888777777666666777764322110 0 0011233445555 55555444
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 011056 282 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILM 361 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~ 361 (494)
...+.......+..+.+.++.+ .++.++ ...........+..+++.++.+++.||+|+|+.+..+..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~-~~g~~~----------~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~ 279 (392)
T PRK10473 211 ITTLSVTVILTFVNTSPVLLME-QMGFSR----------GEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF 279 (392)
T ss_pred HHHHHHHHHHHHHHhCHHHHHH-HcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4444333333444444544432 222211 11123344456778899999999999999999998888877
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHH
Q 011056 362 ALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIP 441 (494)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 441 (494)
.++.+.+.... ..+.......+.+.+.+...+. ....+..|.+ ++.|.+. ....++
T Consensus 280 ~~~~~~~~~~~-----------------~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~-~~~g~~~----~~~~~~ 335 (392)
T PRK10473 280 LAAGITLALSP-----------------SHAVSLFGITLICAGFSVGFGV--AMSQALGPFS-LRAGVAS----STLGIA 335 (392)
T ss_pred HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCc-ccccHHH----HHHHHH
Confidence 77777666552 1222333333334444333322 2334444541 3334444 445567
Q ss_pred HHHHhhhhhhhhhhcC
Q 011056 442 QIVVSMGSGPWDQLFG 457 (494)
Q Consensus 442 ~~l~~~~~g~l~~~~g 457 (494)
+.+++.+++++.+..|
T Consensus 336 ~~~g~~~~~~l~~~~g 351 (392)
T PRK10473 336 QVCGSSLWIWLAAVLG 351 (392)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7778888888888777
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-24 Score=206.69 Aligned_cols=380 Identities=13% Similarity=0.083 Sum_probs=229.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHH
Q 011056 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (494)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~ 111 (494)
.+.+....+....++....+++|.+. +++|.|+.+.|++.+++.+...+++|+.|+++| |+||||.++......
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D----r~grr~~~~~~~~~~- 78 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISD----KLGLKKHLLWIISGL- 78 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHHHHHH-
Confidence 34444444444456667777888876 568999999999999999999999999999999 999999877533322
Q ss_pred HHHHHH---HhhccccccccCCCCCCcchHHHHHHHHHHhhccc-cccccc--cc--cchhhHHhHHHHHHHHHHHHHHh
Q 011056 112 AVAVLL---IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVA-NNMTQG--KD--HRRTRVANAYFSLFMAVGNILGY 183 (494)
Q Consensus 112 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~--~~r~~~~~~~~~~~~~~g~~~g~ 183 (494)
+++... ..+.+... ........+..+..+..... ...... ++ +++.+ .++......++|..+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~g~~~g~ 150 (396)
T TIGR00882 79 LVLFAPFFIYVFGPLLQ-------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNF-EYGKARMFGCVGWALCA 150 (396)
T ss_pred HHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhccc-ccchhhhhcccHHHHHH
Confidence 222221 11111100 00001111112222221111 111111 12 22222 56777778889999999
Q ss_pred hhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHH
Q 011056 184 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 263 (494)
Q Consensus 184 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (494)
.+++.+. . .+|+..|++.+.+.++..++.+...||+|++++.+ + .. ++++ ++...+
T Consensus 151 ~~~g~l~-----~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~~~~----~~~~~~ 206 (396)
T TIGR00882 151 SIAGILF-----S-----------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVA-N-AL--GANA----SAFSLK 206 (396)
T ss_pred HHHhhhh-----c-----------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh-c-cc--cccc----CCCCHH
Confidence 9987631 1 16899998887777766655554455543221111 0 00 0000 111233
Q ss_pred HHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 011056 264 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 343 (494)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 343 (494)
+..+.+|+ |+++..++..+.....+.....+.+.|+.+.. ... +. +............+...++.+..++
T Consensus 207 ~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~-~~~-----~~--~~~~~g~~~~~~~i~~~~~~~~~g~ 276 (396)
T TIGR00882 207 LALELFRQ--RKFWMFVLYVVGVACVYDVFDQQFANFFTSFF-ATP-----QQ--GTRVFGYVTTMGELLNALIMFCAPL 276 (396)
T ss_pred HHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc-----cc--chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777 66666655554444433334334555554322 100 00 1011112233456667788899999
Q ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccC
Q 011056 344 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 423 (494)
Q Consensus 344 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 423 (494)
+.||+|+|+.+.++..+.++...+..... +.+...+...+.|++.............+..|+
T Consensus 277 l~~r~g~~~~l~~~~~l~~l~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~- 338 (396)
T TIGR00882 277 IINRIGAKNALLIAGTIMSVRIIGSSFAT-----------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV- 338 (396)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHHhcC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-
Confidence 99999999999888887777666544432 345555666677777665554555556666666
Q ss_pred CCCcchhhhH-HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 424 GLGQGLSLGV-LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 424 ~~~~g~~~g~-~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
+.+++..+. .+....+|+.+++.+.|++.|..| +...|.+.+++.++.++...+
T Consensus 339 -~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G--~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 339 -RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG--FQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred -ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHH
Confidence 777877766 678999999999999999999887 778888888888777766543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=211.20 Aligned_cols=352 Identities=16% Similarity=0.103 Sum_probs=216.9
Q ss_pred HHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 011056 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (494)
Q Consensus 46 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (494)
.........|.+.+++|.|..+.+++.++..++..+++++.|+++| |+|||+.++. +.+...++.++..+++++.
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSD----RSNPRVFLPI-GLILCAIVNLFFGFSTSLW 84 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHH----hhCCeehhHH-HHHHHHHHHHHHHHhhhHH
Confidence 3444445678888999999999999999999999999999999999 9999887666 6666677777777777762
Q ss_pred cccCCCCCCcchHHHHHHHHHHhh----ccccccccc---cccchhhHHhHHHHHHHHHHHHHHhh-hcccccccccchh
Q 011056 126 WLLGDRGDFRPRAIAVFVFGFWIL----DVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYA-TGSFSGWFKILPF 197 (494)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~-~g~~~~~~~~~~~ 197 (494)
...+.....++. ......... ++++|++ +.++......+|..+++. ++.... .
T Consensus 85 ------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~~~~-----~- 145 (379)
T TIGR00881 85 ------------VMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGT-WVSFWNCSHNVGGGLLPPLVLFGIA-----E- 145 (379)
T ss_pred ------------HHHHHHHHHHhhccccCCchHHHHHHhcCHhhhee-eEeehhccchhHHHHHHHHHHHHHH-----h-
Confidence 222222222221 111121111 5667776 899999999999999883 443210 0
Q ss_pred hhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC---Cc-ccccc-chhhhhhHHHHHHHHhhhc
Q 011056 198 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF---SE-EGHEQ-SSDVHEAFLWELFGTFRYF 272 (494)
Q Consensus 198 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~-~~~~~-~~~~~~~~~~~~~~~~~~~ 272 (494)
..+|++.|++.+++.++..++.++..||+++.+..+.+++ ++ +++++ ++++.+.......+.+++
T Consensus 146 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 215 (379)
T TIGR00881 146 ---------LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLN- 215 (379)
T ss_pred ---------cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhc-
Confidence 1278999988887777666666667777654322111110 00 00000 000011111123344555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Q 011056 273 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF 352 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~ 352 (494)
+.++.+.+..++..........+.+.++.+. ++.++. ..........+..+++.++.+++.||..+++
T Consensus 216 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 283 (379)
T TIGR00881 216 -KVLWYISLGYVFVYVVRTGILDWSPLYLTQE-KGFSKE----------KASWAFTLYELGGLVGTLLAGWLSDKLFNGR 283 (379)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHH----------HHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence 6777777777777766667777778777543 222211 1223344456778899999999999864333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhh
Q 011056 353 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 432 (494)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 432 (494)
..................... . +. .+.+...+...+.|+......+....+..|.+|+ +++|++.|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~---~--------~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g 349 (379)
T TIGR00881 284 RGPLAVFFMALIIVSLLVYWL---N--------PA-ANPLMDLICLFALGFLVYGPQMLIGVIASELAPK--KAAGTAAG 349 (379)
T ss_pred chHHHHHHHHHHHHHHHHHhc---C--------cc-hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc--chhHHHHH
Confidence 222222111111111111100 0 11 1233344444555554444445556778899998 99999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 433 VLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 433 ~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
+.+....+++.++|.+.|.+.|..|
T Consensus 350 ~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 350 FVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred HHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 9999999999999999999999877
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=217.41 Aligned_cols=360 Identities=15% Similarity=0.091 Sum_probs=238.8
Q ss_pred HhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHH
Q 011056 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (494)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~ 117 (494)
...+...++.......+|.+.+++|.+..+.+++.+.+.++..++.++.|+++| |+||||.++. +.+...++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~~~~ 83 (485)
T TIGR00711 9 LGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK----RFGTRRLFLI-STFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHH----HhCcHHHHHH-HHHHHHHHHHH
Confidence 333444456667777899999999999999999999999999999999999999 9999887766 66677777777
Q ss_pred HhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhccccccccc
Q 011056 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 194 (494)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~ 194 (494)
+.+++++..+ .....+.+++.+........... ++++|++ +.++......+|..+|+.+++.+.
T Consensus 84 ~~~~~~~~~l--------~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~g~~~~~~l~---- 150 (485)
T TIGR00711 84 CGVAPNLELM--------IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGR-AMAIWGLTVLVAPALGPTLGGWII---- 150 (485)
T ss_pred HhCcCCHHHH--------HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHHhhhhhccHhHhc----
Confidence 7788776211 12222222222222222222222 6677776 999999999999999999877631
Q ss_pred chhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC------------------CCccccccchh
Q 011056 195 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP------------------FSEEGHEQSSD 256 (494)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~------------------~~~~~~~~~~~ 256 (494)
.. .+||+.|++.+.+.++..++..+..||+++.+.++.+. +.++++..+.+
T Consensus 151 -~~----------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (485)
T TIGR00711 151 -EN----------YHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSN 219 (485)
T ss_pred -cC----------cCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCch
Confidence 11 27999999887777666666666667654322211110 00000000000
Q ss_pred h---------------------hhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCcc
Q 011056 257 V---------------------HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 315 (494)
Q Consensus 257 ~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (494)
. .+.+.. -.+.+++ |+++..++..++..........+.+.|+. +.++.++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~g~s~~---- 291 (485)
T TIGR00711 220 EILILSITGLVAIIAFVVWELTDDNPLV-DLRLFKY--RNFTIGCVYMSLLGLGLYGSFYLLPLYLQ-QVLGYTAL---- 291 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcc-CHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCHH----
Confidence 0 000000 0234455 56666666666666666666667777774 33332221
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHH
Q 011056 316 YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAAL 395 (494)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (494)
...+......++.++++++.+++.||+|||+.+..+..+.+++..++.+.. + ++ .+.+...
T Consensus 292 ------~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~----~--------~~-~~~~~~~ 352 (485)
T TIGR00711 292 ------QAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF----T--------PD-TPFLAIA 352 (485)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC----C--------CC-CCHHHHH
Confidence 122334456777889999999999999999998888888777777665321 0 11 1234455
Q ss_pred HHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 011056 396 IIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 455 (494)
Q Consensus 396 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~ 455 (494)
....+.|++.+...+.......+..|+ +++|++.|+.+....+|+.+|+.+.|.+.+.
T Consensus 353 ~~~~l~g~g~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 353 LPQFIRGFGMGCFFMPLTTIALSGLPP--HKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888887776666677777887 8999999999999999999999999998874
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=207.57 Aligned_cols=359 Identities=12% Similarity=0.008 Sum_probs=198.6
Q ss_pred HhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHH-HHHHH-----HHhhhhccccceecccccCCCCCcchhHHHHHHHH
Q 011056 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASII-WLCGP-----VSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (494)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~-~~~~~-----~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~ 111 (494)
...+...++........|.+.++++.++.+.+.+ .+... +...+++++.|+++| |+||||.++. +.+..
T Consensus 22 ~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~D----r~Grr~~l~~-~~~~~ 96 (434)
T PRK15075 22 SGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYID----RVGRRKGLIV-TLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhh----hhchHHHHHH-HHHHH
Confidence 3333334556666678888889999988776543 33222 223467889999999 9999997776 66677
Q ss_pred HHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhc----cccccccc---cccchhhHHhHHHHHHHHHHHHHHhh
Q 011056 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILD----VANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYA 184 (494)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~ 184 (494)
.++..++++++++..+- ......+.+.++..++.. ........ ++++|++ ..++.....++|..+++.
T Consensus 97 ~~~~~l~~~~~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~-~~~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 97 ASGTLLIAFVPGYATIG----LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGF-YTSWQSASQQVAVVFAAL 171 (434)
T ss_pred HHHHHHHHhCCcHHHHH----HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchH-HHHHHHHHHHHHHHHHHH
Confidence 77788888888762100 000001122222222211 11111122 6777877 999988888888888887
Q ss_pred hcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHH
Q 011056 185 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 264 (494)
Q Consensus 185 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (494)
+++.+... ..+... ...+||+.|++......+ ........||+++..+++ + +...++
T Consensus 172 ~g~~l~~~-~~~~~~------~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~~-------~--------~~~~~~ 228 (434)
T PRK15075 172 LGYLLNQW-LSPAQM------AEWGWRIPFLIGCLIVPF-IFLIRRSLEETEEFLARK-------H--------RPSMRE 228 (434)
T ss_pred HHHHHHHh-CCHHHH------hccchHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHhh-------h--------cccccc
Confidence 77652100 000000 113799999875443221 121212233321100000 0 000111
Q ss_pred HHHH-hhhchHHHHHH-HHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHH
Q 011056 265 LFGT-FRYFSGTIWII-LIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 342 (494)
Q Consensus 265 ~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 342 (494)
..+. .++ ++.+.. +...++....+.....|.+.|+.+. ++.+.. ...+......++.+++.++.|
T Consensus 229 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~~~~----------~~~~~~~~~~~~~~~~~~~~g 295 (434)
T PRK15075 229 IFRSLAAN--WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-LHLSAA----------DSLLVTLCVGVSNFIWLPIGG 295 (434)
T ss_pred HHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 1221 222 333322 2333334445556667788877532 232211 112333445677888999999
Q ss_pred HHHhhhcchHHHHHHHHHHHHHHH-HHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcc
Q 011056 343 KLCRKWGAGFIWGISNILMALCFL-AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 421 (494)
Q Consensus 343 ~l~dr~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 421 (494)
++.||+|||+....+..+..+... ...... +. .+.........+.+++.+...+..+.+..|.+|
T Consensus 296 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p 361 (434)
T PRK15075 296 ALSDRIGRRPVLIAFTVLAILTAYPALSWLV-------------AA-PSFARMLAVELWLSFLYGSYNGAMVVALTEVMP 361 (434)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-------------cC-CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCC
Confidence 999999999988766544332221 111111 11 022223333444556666666666678899999
Q ss_pred cCCCCcchhhhHHHHHH-HHHHHHHhhhhhhhhhhcCC
Q 011056 422 SLGLGQGLSLGVLNLAI-VIPQIVVSMGSGPWDQLFGG 458 (494)
Q Consensus 422 ~~~~~~g~~~g~~~~~~-~~g~~l~~~~~g~l~~~~g~ 458 (494)
+ +.||++.|+.+... .+++.++|.+.|++.|..|.
T Consensus 362 ~--~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 362 A--EVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred C--CccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 8 89999999865444 44578899999999998873
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-23 Score=201.24 Aligned_cols=352 Identities=14% Similarity=0.058 Sum_probs=213.1
Q ss_pred CHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHH
Q 011056 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (494)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~ 108 (494)
+++.++..........+......+.+|.+.+++|.|+.+.+++.+++.++..+++++.|+++| |+||||.++. +.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D----r~grr~~~~~-~~ 80 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSD----RVGRRPVILV-GM 80 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH----hcCChHHHHH-HH
Confidence 344444444444444456666667889999999999999999999999999999999999999 9999887666 55
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhh
Q 011056 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYAT 185 (494)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~ 185 (494)
....++.+...+++++..+ .....+.+++.+........... +++++.+ +.+....+..++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i 151 (394)
T PRK11652 81 SIFILGTLVALFAHSLTVL--------IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRH-ANSLLNMGILVSPLLAPLI 151 (394)
T ss_pred HHHHHHHHHHHHHccHHHH--------HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 6666666666677666211 11112222222211111111111 3445554 7888888888888888888
Q ss_pred cccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHH
Q 011056 186 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWEL 265 (494)
Q Consensus 186 g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (494)
++.. ... .+||+.|.+.++..++..++..+..||++++++++ +...++.
T Consensus 152 ~~~l-----~~~----------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 200 (394)
T PRK11652 152 GGLL-----TTL----------FGWRACYLFLLLLGAGVTFSMARWMPETRPADARR----------------TRVLASY 200 (394)
T ss_pred HHHH-----Hhc----------cChHHHHHHHHHHHHHHHHHHHHhCCccCccccch----------------hHHHHHH
Confidence 7652 110 17999998887766655555556677754322111 0112334
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011056 266 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 345 (494)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~ 345 (494)
.+.+++ |+++..++..+....+...+..+.+.++.+ .++.++. ...+......++.++++.+.+++.
T Consensus 201 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~----------~~~~~~~~~~~~~~~g~~~~~~l~ 267 (394)
T PRK11652 201 RTLLSN--RRFNCYLLMLIGTLAGIAVFEACSGVLMGA-VLGLSSM----------TVSILFILPIPAAFFGAWFAGRPN 267 (394)
T ss_pred HHHHcC--hHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HcCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 666655444444444444444445555543 2332211 111223334566777888888899
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCC
Q 011056 346 RKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 425 (494)
Q Consensus 346 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 425 (494)
||.+++... ......++.+.+..... ....+.+.......+.+++.+...+...+...|..| +
T Consensus 268 ~~~~~~~~~--~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~ 330 (394)
T PRK11652 268 KRFSTLMWQ--SVICCLLAGLLMWIPGW------------FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP---Y 330 (394)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHH------------hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---c
Confidence 988733322 22222222222111100 000123445566677888888888888888888776 6
Q ss_pred CcchhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 011056 426 GQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 455 (494)
Q Consensus 426 ~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~ 455 (494)
++|++.++.+....+|..+++.+.+.+.+.
T Consensus 331 ~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 331 LAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 789999999999999999999998877543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-25 Score=211.91 Aligned_cols=344 Identities=15% Similarity=0.079 Sum_probs=212.7
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
+.........|.+.+++|.++.+.+++.++..++..++.++.|+++| |+|||+.++. +.+...++.++..+++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 105 (398)
T TIGR00895 31 YDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLAD----RIGRKRVLLW-SILLFSVFTLLCALATNV 105 (398)
T ss_pred HHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhhhHHHHHH-HHHHHHHHHHHHHHccch
Confidence 44455556788888999999999999999999999999999999999 9999886665 556666667777677665
Q ss_pred ccccCCCCCCcchHHHHHHHHHHhh----ccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchh
Q 011056 125 GWLLGDRGDFRPRAIAVFVFGFWIL----DVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF 197 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~ 197 (494)
. ...+.....++. ......... ++++|++ +.++......+|..+++.+++.+ ...
T Consensus 106 ~------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~l-----~~~ 167 (398)
T TIGR00895 106 T------------QLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGT-AVGLMFCGYPIGAAVGGFLAGWL-----IPV 167 (398)
T ss_pred H------------HHHHHHHHHhcccccchhhHHHHHHHHcCHHhhch-hHhhHhhHHHHHHHHHHHHHHHH-----hhc
Confidence 2 222222222221 111111111 5566776 99999999999999999887652 111
Q ss_pred hhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC--------------CccccccchhhhhhHHH
Q 011056 198 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF--------------SEEGHEQSSDVHEAFLW 263 (494)
Q Consensus 198 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 263 (494)
.+|++.|.+.+++..+..++.....||+++...++++++ ++++..++++.+....+
T Consensus 168 ----------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (398)
T TIGR00895 168 ----------FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKR 237 (398)
T ss_pred ----------ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhh
Confidence 168888888766666665666666777654211110000 00000000000111122
Q ss_pred HHHHHhhhc--hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 011056 264 ELFGTFRYF--SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 341 (494)
Q Consensus 264 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 341 (494)
+..+.+++. .+..+......++..........+.+.+. ++ ++.++ ...........++.+++.++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~----------~~~~~~~~~~~~~~~~~~~~~ 305 (398)
T TIGR00895 238 SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM-VE-LGFSL----------SLAATGGALFNFGGVIGSIIF 305 (398)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 13333333333444444444555555333 22 22211 111233444567789999999
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcc
Q 011056 342 EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 421 (494)
Q Consensus 342 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 421 (494)
+++.||+++|+..... .+..+...++.... + +.+......++.|++.+...+...+++.|.+|
T Consensus 306 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 368 (398)
T TIGR00895 306 GWLADRLGPRVTALLL-LLGAVFAVLVGSTL-------------F---SPTLLLLLGAIAGFFVNGGQSGLYALMALFYP 368 (398)
T ss_pred HHHHhhcchHHHHHHH-HHHHHHHHHHHHHh-------------h---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999998544433 33333333332211 1 24555667778888888888889999999999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHHHhhhhhhh
Q 011056 422 SLGLGQGLSLGVLNLAIVIPQIVVSMGSGPW 452 (494)
Q Consensus 422 ~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l 452 (494)
+ +++|++.|+.+....++..++|.+.|.+
T Consensus 369 ~--~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 369 T--AIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 8 9999999999999999999999999875
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-23 Score=199.50 Aligned_cols=368 Identities=15% Similarity=0.116 Sum_probs=218.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCC-----CCcchhHHHHHHHHHHHH
Q 011056 41 GGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-----GRRRPFIVCGAISIAVAV 115 (494)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~-----Grr~~~l~~~~~~~~~~~ 115 (494)
+...+.++.....+|.+.++.|+|.+++|++..+... .+.+|++|+++| |+ ||||.++..+.+..+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~D----r~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 9 FASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMD----RYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHH----cccccCCCcchhHHHHHHHHHHHHH
Confidence 3344566667778999999999999999999777765 589999999999 66 999988887777777777
Q ss_pred HHHhhccccccccCCCCCCcchHHHHHHHHHHh----hccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhccc
Q 011056 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWI----LDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSF 188 (494)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~ 188 (494)
...++.++. ... .......+.... .+...+.... ++++|++ +.++...+.++|..+++.++..
T Consensus 83 ~~l~~~~~~--------~~~-~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~-~~~~~~~g~~~g~i~g~~l~~~ 152 (402)
T PRK11902 83 AAMAFCPPH--------AAL-WPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGA-GAAVKVLGYRLAMLVSGGLALW 152 (402)
T ss_pred HHHHhcCcc--------chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhH-HHHHHHHHHHHHHHHHhHHHHH
Confidence 776665432 111 111212111122 2233333333 6666776 9999999999999998887654
Q ss_pred ccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHH
Q 011056 189 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGT 268 (494)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (494)
+ ... ..+||..|++.+++.++..+. .+..||++++++++ + + .+++..++..+.
T Consensus 153 l-----~~~---------~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~-------~--~---~~~~~~~~~~~l 205 (402)
T PRK11902 153 L-----ADR---------VLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPP-------R--S---LGEAVVGPLRDF 205 (402)
T ss_pred H-----Hhc---------ccCHHHHHHHHHHHHHHHHHH-HHhcCCCccccccc-------c--h---hHHHHHHHHHHH
Confidence 2 110 017999999988766655443 34566654322111 0 0 011123344555
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011056 269 FRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 348 (494)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~ 348 (494)
+++ |.++..++..++...+......+.+.++.++ ++.++. ..+.+......++.+++.++.+++.||+
T Consensus 206 ~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-~G~~~~---------~~g~~~~~~~~~~~i~g~~~~g~l~~r~ 273 (402)
T PRK11902 206 FSR--RGAWALLLLIVLYKLGDAFAGSLSTTFLIRG-AGFSAG---------EVGIVNKTLGLAATIVGALAGGTLMVRL 273 (402)
T ss_pred HhC--cCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCHH---------HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 666 6666665555554433222222333344322 222211 1121211223345788899999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHH----HhhHhhhhhhchhhhHhhhcccCC
Q 011056 349 GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTI----LGGPLAITYSVPYALVSIRTESLG 424 (494)
Q Consensus 349 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 424 (494)
|+|+.+..+..+..+..+.+...... ++ +.+.......+ .+++.+...+....++.+..|
T Consensus 274 g~~~~l~~~~~~~~l~~l~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--- 337 (402)
T PRK11902 274 GLYRSLMLFGVLQAVSNLGYWVLAVT-----------PK--HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS--- 337 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-----------CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---
Confidence 99998877666655554443322100 11 23333333333 334444444444445554444
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 425 LGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 425 ~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
++..++.+....++..+++.++|.+.|..| +...|.+.+++++++.++.+...++
T Consensus 338 ---~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G--~~~~f~~~~~~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 338 ---ATQYALLSALASVGRVYVGPTSGYLVEAYG--WPGFYLMTVVIALPGLALLWLMRGT 392 (402)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445566666777888877789999999988 6667888877777776666554433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-23 Score=199.13 Aligned_cols=365 Identities=15% Similarity=0.078 Sum_probs=220.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhh
Q 011056 41 GGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (494)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~ 120 (494)
+...++.......++++.++++.++.+.+++.+++.+...+..|+.|+++| |+||||.++. +.+...++.+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laD----r~grr~vl~~-~~~~~~~~~~~~~~ 87 (393)
T PRK11195 13 FFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFAD----SFPKGRVMFI-ANGIKLLGCLLMLF 87 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhh----ccCCchhhHH-HHHHHHHHHHHHHH
Confidence 333343333444556678999999999999999999999999999999999 9999998777 44454555554444
Q ss_pred ccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchh
Q 011056 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF 197 (494)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~ 197 (494)
+.+. ...+.+.+++.+........... ++++|.+ ++++.+....+|..+||.+++++ ..+
T Consensus 88 ~~~~-----------~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~-a~~~~~~~~~~~~~~Gp~lgG~l-----~~~ 150 (393)
T PRK11195 88 GIHP-----------LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVK-ANGWMEGSTIAAILLGTVLGGAL-----ADP 150 (393)
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 4332 12233334443333333333333 7777887 99999999999999999999873 111
Q ss_pred hhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHH
Q 011056 198 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIW 277 (494)
Q Consensus 198 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (494)
.|+..+.+.+...++. .+..+.+||+++++++++ +++ ....+...++..+.+++ |.++
T Consensus 151 -----------~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~------~~~--~~~~~~~~~~~~~l~~~--~~~~ 208 (393)
T PRK11195 151 -----------HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQS------WNP--IALLRDFFHACRVLWRD--KLGR 208 (393)
T ss_pred -----------HHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccC------CCH--HHHHHHHHHHHHHHHhC--chhH
Confidence 2455555554433333 333456777653221110 000 00011111222334444 4444
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 011056 278 IILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGIS 357 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~ 357 (494)
.......+.+..........+.++ ++.++.++. .........+++.++++++.+++.||.++++.+..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~lg~s~~----------~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g 277 (393)
T PRK11195 209 FSLAGTTLFWGAGATLRFLVLAWA-PVALGITLN----------QPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAG 277 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCChh----------HHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHH
Confidence 433333333333333333344555 333433321 112334556778899999999999999988877766
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCC-cchhhhHHHH
Q 011056 358 NILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG-QGLSLGVLNL 436 (494)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~g~~~~ 436 (494)
.. .++....+...+ +.+...+...+.|++.+...+...+.+.+..|+ +. +|++.++.++
T Consensus 278 ~~-~~~~~~~~~~~~-----------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~--~~~~g~~~a~~~~ 337 (393)
T PRK11195 278 IL-MGLVVLLMALQH-----------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV--LVGAGHSIAVQNF 337 (393)
T ss_pred HH-HHHHHHHHHHHh-----------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc--cccchhHHHHHhH
Confidence 43 333333333321 344455666678888887776677777776554 43 7999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 437 AIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 437 ~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
...++..++..+.+.+ +..| ....+.+.+...+++..+...++.
T Consensus 338 ~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK11195 338 NENLAMLLMLGLYSLL-VKLG--VPVVAVIVGFGLLVALAMALLWRW 381 (393)
T ss_pred HHHHHHHHHHHHHHHH-HHcC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998855 5556 556666655555555555544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-23 Score=200.56 Aligned_cols=335 Identities=15% Similarity=0.122 Sum_probs=204.5
Q ss_pred HHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 011056 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (494)
Q Consensus 46 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (494)
+.....+.+|.+.+++|+|+++.+++.+++.++..+++++.|+++| |+|||+.++. +.+..+++...+.+++++.
T Consensus 6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~-~~~~~~i~~~~~~~~~~~~ 80 (377)
T PRK11102 6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMAD----SFGRKPVILG-GTLVFALAAVACALAQTID 80 (377)
T ss_pred HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHh----hcCChHHHHH-HHHHHHHHHHHHHHHccHH
Confidence 4455567899999999999999999999999999999999999999 9999886655 6666677777777777662
Q ss_pred cccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhccc
Q 011056 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSA 202 (494)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~ 202 (494)
. ......+.+++.+........... ++++|++ +.++......+|..+++.+++.+ ...
T Consensus 81 ~--------~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~l-----~~~----- 141 (377)
T PRK11102 81 Q--------LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSR-MMSFVTLVMTIAPLLAPIIGGWL-----LVW----- 141 (377)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-----HHH-----
Confidence 1 111112222222222222222222 5666776 99999999999999999887652 111
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHHH
Q 011056 203 CNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIV 282 (494)
Q Consensus 203 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (494)
.+|++.|++.+++.++..++..+..||++++++++ +. +.+...++..+.+++ |+.+..++.
T Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~~~--~~~~~~~~~ 202 (377)
T PRK11102 142 -----FSWHAIFWVLALAAILAAALVFFFIPETLPKERRQ-------PF-----HLRTTIRNFASLFRH--KRVLGYMLA 202 (377)
T ss_pred -----cChHHHHHHHHHHHHHHHHHHHHhCCccCcccccC-------CC-----ChHHHHHHHHHHHcC--hHHHHHHHH
Confidence 17899998888777776666666677764322111 00 011123344455666 666666665
Q ss_pred HHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Q 011056 283 TALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMA 362 (494)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~ 362 (494)
.++.+.+...+..+.+.+..+. ++.++ ...........+..+++.++.+++.||+|+|+.+..+..+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~-~g~s~----------~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 271 (377)
T PRK11102 203 SGFSFAGMFSFLTAGPFVYIEL-NGVSP----------QNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQF 271 (377)
T ss_pred HHHHHHHHHHHHHcCHHHHHHH-hCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 5555555555555555555432 22221 111233445677788999999999999999999887776544
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHH-HHH
Q 011056 363 LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAI-VIP 441 (494)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g 441 (494)
+..+.+...... +. ..+...+...+.+.+.+.........+.|..| +.+|++.++.+... .++
T Consensus 272 ~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~g 335 (377)
T PRK11102 272 IMGIWLVVSALL-----------DL--GFWALVVGVAAFVGCVSMISSNAMAVILDEFP---HMAGTASSLAGTLRFGIG 335 (377)
T ss_pred HHHHHHHHHHHH-----------hh--hHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc---ccchHHHHHHHHHHHHHH
Confidence 433332222100 00 22333333333443444444444455555544 67888888876653 455
Q ss_pred HHHHhhhhh
Q 011056 442 QIVVSMGSG 450 (494)
Q Consensus 442 ~~l~~~~~g 450 (494)
+.+++.+.+
T Consensus 336 ~~~g~~~~~ 344 (377)
T PRK11102 336 AIVGALLSL 344 (377)
T ss_pred HHHHHHHHh
Confidence 555565543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=213.08 Aligned_cols=375 Identities=14% Similarity=0.086 Sum_probs=210.8
Q ss_pred HHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHH
Q 011056 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (494)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~ 114 (494)
.+....+...+........+|.+.+++|+|..+.+++.+.+.++..++.++.|+++| |+||||.++. +.+...++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~ 98 (496)
T PRK03893 24 AAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGD----RYGRRLAMVI-SIVLFSVG 98 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHH-HHHHHHHH
Confidence 344444444456666667788888999999999999999999999999999999999 9999886665 66666677
Q ss_pred HHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccc
Q 011056 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 191 (494)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~ 191 (494)
.++..+++++..+ .....+.+++.+........... ++++|++ +.+......++|..+++.+++.+
T Consensus 99 ~~~~~~~~~~~~l--------~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~l-- 167 (496)
T PRK03893 99 TLACGFAPGYWTL--------FIARLVIGMGMAGEYGSSATYVIESWPKHLRNK-ASGFLISGFSIGAVVAAQVYSLV-- 167 (496)
T ss_pred HHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 7777777776211 11122222222222122222222 6666776 89999999999999999887652
Q ss_pred cccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccccc-chhhhhhHHHH------
Q 011056 192 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ-SSDVHEAFLWE------ 264 (494)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------ 264 (494)
... .+||+.|.+..+..+ ..+......||+++.++++++..+.++..+ ....++.....
T Consensus 168 ---~~~----------~~w~~~f~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (496)
T PRK03893 168 ---VPV----------WGWRALFFIGILPII-FALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAA 233 (496)
T ss_pred ---hcc----------CCHHHHHHHHHHHHH-HHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHH
Confidence 111 279999887544333 223333445555432211111000000000 00000000000
Q ss_pred ---HHHHhhhch-----------------------------HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCC
Q 011056 265 ---LFGTFRYFS-----------------------------GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNE 312 (494)
Q Consensus 265 ---~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (494)
....+.... +.........+...........+.+.|+.++ ++.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-~g~~~-- 310 (496)
T PRK03893 234 AAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD-LGYDP-- 310 (496)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh-cCCCH--
Confidence 000000000 0000000000000011112233456666322 22111
Q ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHH
Q 011056 313 GQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVI 392 (494)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (494)
...........++.+++.++.+++.||+|+|+.+..+..+..+..+...... . ...+
T Consensus 311 --------~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~ 367 (496)
T PRK03893 311 --------HTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG--------------G-ANVW 367 (496)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--------------c-cHHH
Confidence 1122334456777889999999999999999998877666555544333221 1 0222
Q ss_pred HHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHH
Q 011056 393 AALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 469 (494)
Q Consensus 393 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~ 469 (494)
.......+.+.......+...+++.|.+|+ +++|+++|+.+....+|..++|.+.|.+.|..| +...+...+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g--~~~~~~~~~~ 440 (496)
T PRK03893 368 VLGLLLFFQQMLGQGISGLLPKLIGGYFDT--EQRAAGLGFTYNVGALGGALAPILGALIAQRLD--LGTALASLSF 440 (496)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHhhCCH--HHhhcccchhhhhhhHHHHHHHHHHHHHhccCC--hHHHHHHHHH
Confidence 222222222222222334556778899998 899999999999999999999999999999877 5445544333
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=209.21 Aligned_cols=341 Identities=22% Similarity=0.302 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHhHH-HHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhh
Q 011056 42 GIQFGWALQLSLLT-PYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (494)
Q Consensus 42 ~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~ 120 (494)
...+......+.+| .+.+++|.|+.+.+++.+++.++..+++++.|+++| |+||||.++. +.+..+++.....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~l~~-~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 7 LSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSD----RFGRRRVLII-GLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHH----HS-HHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCeeeEee-hhhhhhhHHHHhhh
Confidence 33345556667778 777899999999999999999999999999999999 9999995554 66666666444445
Q ss_pred ccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchh
Q 011056 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF 197 (494)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~ 197 (494)
+++... ......+.+++.+........... ++++|.+ ..+......++|..+++.+++.+. ..
T Consensus 82 ~~~~~~--------~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~g~~~g~~l~~~l~-----~~ 147 (352)
T PF07690_consen 82 ASNFWL--------LLIARFLLGIGSGFFSPASNALIADWFPPEERGR-AFGILSAGFSLGSILGPLLGGFLI-----SY 147 (352)
T ss_dssp HCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHH-HHHHHHHHHHHHHHHHHHHHHHCC-----CH
T ss_pred hhhHHH--------Hhhhccccccccccccccccccccccchhhhhhh-ccccccchhhhhhhcccchhhhhh-----hc
Confidence 555511 112222233333223233323222 6667777 999999999999999999987631 11
Q ss_pred hhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHH-HHHHhhhchHHH
Q 011056 198 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE-LFGTFRYFSGTI 276 (494)
Q Consensus 198 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 276 (494)
.+||+.|++.+++.++..++.....++++++++++.+.+++ ++.+.+.++ .++..++ +.+
T Consensus 148 ----------~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~ 208 (352)
T PF07690_consen 148 ----------FGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-------SKKPKPLKPGFKSLFKN--PVL 208 (352)
T ss_dssp ----------CHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------HHHCCCH-CTHHHHH--HCC
T ss_pred ----------cccccccccccchhhhhhhhHhhhhhhcccccccccccccc-------ccccccccccccccccc--chh
Confidence 16899999998888877765555565554433322111110 001111112 2222223 444
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 011056 277 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI 356 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~ 356 (494)
|......+...........+.+.|+.+. ++.+ +............+...++.++.+++.||+++|+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 278 (352)
T PF07690_consen 209 WILLIAFFLFFFVFSGFSFFLPLYLQEV-LGFS---------GPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLI 278 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHCC---------THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhc-cCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 4333344444445555666677765433 2222 01122222444567778889999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHH
Q 011056 357 SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNL 436 (494)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 436 (494)
......+..+.+..... . .+....+....+.|++.+...+...+++.+..|+ +++|++.|+.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~ 342 (352)
T PF07690_consen 279 AILLLILGALGLLLLPF------------S--SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP--EYRGTAFGLFNS 342 (352)
T ss_dssp HHHHHHHHHHHHCCSHH------------H--CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------------h--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHH
Confidence 66666555555443320 0 0234555677788999998899999999999998 999999999999
Q ss_pred HHHHHHHHHh
Q 011056 437 AIVIPQIVVS 446 (494)
Q Consensus 437 ~~~~g~~l~~ 446 (494)
...++..++|
T Consensus 343 ~~~~~~~igP 352 (352)
T PF07690_consen 343 IGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 9999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-23 Score=198.03 Aligned_cols=346 Identities=14% Similarity=0.071 Sum_probs=211.9
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHH
Q 011056 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (494)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~ 113 (494)
...++......+......+.+|.+.+++|.|+++.+++.+++.++..+++++.|+++| |+||||.++. +.....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~ 83 (401)
T PRK11043 9 VYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSD----RYGRKPVLLA-GLSLFAL 83 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHh----hcCCcHHHHH-HHHHHHH
Confidence 3333333444455666667778888999999999999999999999999999999999 9999887665 5556666
Q ss_pred HHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhccccc
Q 011056 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSG 190 (494)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~ 190 (494)
+.+...+++++..+ .....+.+++.+........... +++++.+ ..+.......+|..+++.+++..
T Consensus 84 ~~~~~~~~~~~~~l--------~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~l- 153 (401)
T PRK11043 84 GSLGMLWVESAAQL--------LVLRFVQAVGVCSAAVIWQALVIDRYPAQKANR-VFATIMPLVALSPALAPLLGAWL- 153 (401)
T ss_pred HHHHHHHhcCHHHH--------HHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 77777677776211 11112222222111111111111 4444554 77777777888888888887652
Q ss_pred ccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhh
Q 011056 191 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFR 270 (494)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (494)
... .+||+.|++.++..++..++.++ .+|++++++++ ++ .++.++.++
T Consensus 154 ----~~~----------~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~---~~~~~~~~~ 201 (401)
T PRK11043 154 ----LNH----------FGWQAIFATLFAITLLLILPTLR-LKPSKKARKQS--------------QD---ALTFKQLLK 201 (401)
T ss_pred ----Hhc----------CChHHHHHHHHHHHHHHHHHHHH-cCCCCCccccc--------------hH---HHHHHHHHc
Confidence 111 17899998887766666555443 34432211100 01 123344555
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011056 271 YFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA 350 (494)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~ 350 (494)
+ ++++...+..............+.+.++. + ++.++. ...+......++..++++..+++.||+++
T Consensus 202 ~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-~g~s~~----------~~g~~~~~~~~~~~~g~~~~~~l~~r~~~ 267 (401)
T PRK11043 202 S--KTYLGNVLIFAACSAAFFAWLTGSPFILE-Q-MGYSPA----------DIGLSYVPQTIAFLVGGYGCRAALQKWGG 267 (401)
T ss_pred C--hhHHHHHHHHHHHHHHHHHHHHHhHHHHH-H-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 5 55554444443433444445555666553 2 222211 11122334456678888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchh
Q 011056 351 GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLS 430 (494)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 430 (494)
|+.........+++.+.+...... .. .+.+..+....+.+++.+...+...+...+..| +++|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~ 332 (401)
T PRK11043 268 EQLLPWLLVLFAVSVIAIWLASLL-----------SH-PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP---QATGKA 332 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----------cc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc---ccChHH
Confidence 887665555554444433222100 10 023444455666777787777777666666655 578999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhh
Q 011056 431 LGVLNLAIVIPQIVVSMGSGPWDQL 455 (494)
Q Consensus 431 ~g~~~~~~~~g~~l~~~~~g~l~~~ 455 (494)
.|+.+.....+...++.+.|.+.+.
T Consensus 333 ~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 333 AALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999898999999999988774
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-25 Score=219.15 Aligned_cols=364 Identities=14% Similarity=0.128 Sum_probs=227.5
Q ss_pred hHHHHHHHhCCC---chhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccC
Q 011056 53 LLTPYVQELGIP---HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (494)
Q Consensus 53 ~l~~~~~~~g~s---~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (494)
..+.+.++++++ +.+.+++.+++.++..++.++.|+++| |+||||.+++ +.+...++.++.++++++..+
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~D----r~Grr~~~~~-~~~~~~i~~~~~~~~~~~~~~-- 183 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSD----RFGRKKVLLL-STLVTAVSGVLTAFSPNYTVF-- 183 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhh----hccchHHHHH-HHHHHHHHHHHHHHcccHHHH--
Confidence 456677899998 899999999999999999999999999 9999887766 666667777777788887211
Q ss_pred CCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhccccccc
Q 011056 130 DRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 206 (494)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 206 (494)
...+.+.+++.+........... ++++|++ +.++......+|.++++.++...
T Consensus 184 ------~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~~----------------- 239 (505)
T TIGR00898 184 ------LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAI-VGTLIQVFFSLGLVLLPLVAYFI----------------- 239 (505)
T ss_pred ------HHHHHHHHhhccchHHHHHHHhheecChhhhHH-HHHHHHHHHHHHHHHHHHHHHHh-----------------
Confidence 11112222222221111111222 6666776 88888888889988888776542
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcc----------------cc-c---cchhhhhhHHHHHH
Q 011056 207 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE----------------GH-E---QSSDVHEAFLWELF 266 (494)
Q Consensus 207 ~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~----------------~~-~---~~~~~~~~~~~~~~ 266 (494)
.+||+.|++.++..++..+.. +++||+|++...+++.++.. +. + +++...+.......
T Consensus 240 -~~wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (505)
T TIGR00898 240 -PDWRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFL 317 (505)
T ss_pred -hHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHH
Confidence 158999998887766655544 67899876432211111000 00 0 00000000001233
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011056 267 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 346 (494)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d 346 (494)
+.+++ +.++...+...+.++.........+.+.. . ++ .+ . .......++..+++.++.+++.|
T Consensus 318 ~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--------~~----~-~~~~~~~~~~~i~~~~~~~~l~d 380 (505)
T TIGR00898 318 DLFRT--PNLRKTTLCLMMLWFTTAFSYYGLVLDLG-N-LG--------GN----I-YLDLFISGLVELPAKLITLLLID 380 (505)
T ss_pred HHhCC--hHHHHHHHHHHHHHHHHHHHHHHHhcccc-c-cC--------CC----h-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455 55555554444443332211111111111 1 11 01 0 12233456778889999999999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCC
Q 011056 347 KWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 426 (494)
Q Consensus 347 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 426 (494)
|+|||+.+.++.++.+++++++.+. +.. ..+.......+.+++.+...+..+.+..|.+|+ +.
T Consensus 381 r~grr~~~~~~~~~~~~~~l~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~ 443 (505)
T TIGR00898 381 RLGRRYTMAASLLLAGVALLLLLFV--------------PVD-LYFLRTALAVLGKFGITSAFQMVYLYTAELYPT--VV 443 (505)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHc--------------CCC-chHHHHHHHHHHHHHHHHHHHHHHHHhcccccH--HH
Confidence 9999999998888888887776665 221 123344445555666666677788899999999 89
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCCC
Q 011056 427 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 488 (494)
Q Consensus 427 ~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 488 (494)
|++++|+.+....+|++++|.+.+ +.+ .+ ....+.+.+++.+++.++.+ +.||++++
T Consensus 444 r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~--~~~~~~~~~~~~~~~~~~~~-~lpet~~~ 500 (505)
T TIGR00898 444 RNLGVGVCSTMARVGSIISPFLVY-LGE-KW--LFLPLVLFGGLALLAGILTL-FLPETKGV 500 (505)
T ss_pred HhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH--HhhHHHHHHHHHHHHHHHHH-cCcCCCCC
Confidence 999999999999999999999998 433 33 34566666666666665554 45666654
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-23 Score=196.68 Aligned_cols=354 Identities=13% Similarity=0.091 Sum_probs=219.4
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
+......+.+|.+.+++|.+..+.++..+++.++..+++++.|+++| |+||||.++. +.+..+++.+++.+++++
T Consensus 30 ~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~a~~~ 104 (413)
T PRK15403 30 LTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSD----RIGRRPVLIT-GALIFTLACAATLFTTSM 104 (413)
T ss_pred HHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHH----HcCchHHHHH-HHHHHHHHHHHHHHcCCH
Confidence 34455566788888999999999999999999999999999999999 9999886665 667777787888788887
Q ss_pred ccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcc
Q 011056 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 201 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~ 201 (494)
+.+ ...+.+.+++.+........... +++++.+ +.++......+|..+|+.+++.+ ..+
T Consensus 105 ~~l--------~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~lg~~l-----~~~---- 166 (413)
T PRK15403 105 TQF--------LIARFIQGTSICFIATVGYVTVQEAFGQTKGIK-LMAIITSIVLVAPIIGPLSGAAL-----MHF---- 166 (413)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-----HHh----
Confidence 322 12223333322221111111111 5555665 89999999999999999988763 111
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHH
Q 011056 202 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI 281 (494)
Q Consensus 202 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (494)
.+||+.|++.++..++..+..++..||++++++++ . +.+...++.++.++| |.++..++
T Consensus 167 ------~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~---------~----~~~~~~~~~~~ll~~--~~~~~~~l 225 (413)
T PRK15403 167 ------VHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP---------F----SAKSVLRDFRNVFRN--RLFLTGAA 225 (413)
T ss_pred ------cCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCC---------C----ChHHHHHHHHHHHcC--HHHHHHHH
Confidence 17999999988877776665556677764321110 0 012234566677778 88888777
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 011056 282 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILM 361 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~ 361 (494)
...+.......+..+.|.++.+ .++.++.+ . .+.......+..+++.+.+++.+|..+++.......+.
T Consensus 226 ~~~~~~~~~~~~~~~~P~~l~~-~~g~s~~~---------~-gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 294 (413)
T PRK15403 226 TLSLSYIPMMSWVAVSPVILID-AGGMTTSQ---------F-AWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQ 294 (413)
T ss_pred HHHHHHHHHHHHHHhChHHHHH-hcCCCHHH---------H-HHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 7777666666666667777653 33322211 1 12223334455666777777765554444433333333
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHH
Q 011056 362 ALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIP 441 (494)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 441 (494)
.++.+++...... . ++ +.+..++...+.+++.+...+...+... .+.+ ..+|++.++.+.....+
T Consensus 295 ~ig~~l~~~~~~~--~--------~~--~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~-~~~G~a~a~~~~~~~~~ 359 (413)
T PRK15403 295 LVGLALLIVGNLL--W--------PH--VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNN-LPKGTVSASLNMVILMV 359 (413)
T ss_pred HHHHHHHHHHHHH--c--------cc--cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCC-CCCcHHHHHHHHHHHHH
Confidence 3333333222100 0 11 2333455666677777776655553322 2221 35799999999999999
Q ss_pred HHHHhhhhhhhhhhcCCCCcchHHHHHHHH
Q 011056 442 QIVVSMGSGPWDQLFGGGNSPAFAVGGISA 471 (494)
Q Consensus 442 ~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~ 471 (494)
..+++...|++.+. + ....|...++++
T Consensus 360 ~~~~~~~~g~~~~~-~--~~~~~~~~~~~~ 386 (413)
T PRK15403 360 MAVSVEIGRWLWFN-G--GRLPFHLLAVVA 386 (413)
T ss_pred HHHHHHHHHHHHHc-C--CchHHHHHHHHH
Confidence 99999999988776 2 344444444333
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=193.24 Aligned_cols=389 Identities=13% Similarity=0.139 Sum_probs=243.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHHHH-hCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHH
Q 011056 32 KLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (494)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~ 110 (494)
..+.++...+...+.+++..++.+.++++ .|+|.+++|.+.++..+...+.+|+.|.++| |.|.||.++.....+
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~D----klg~kK~Ll~~i~~l 83 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISD----KLGLKKHLLWFIAIL 83 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHH----HCTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcc----hhhhhHHHHHHHHHH
Confidence 44555666666667788888999999865 8999999999999999999999999999999 999888766433222
Q ss_pred H-H-HHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc-----cc--cchhhHHhHHHHHHHHHHHHH
Q 011056 111 I-A-VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG-----KD--HRRTRVANAYFSLFMAVGNIL 181 (494)
Q Consensus 111 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~r~~~~~~~~~~~~~~g~~~ 181 (494)
. . ...+...+.+-. ..... ....++...+....++..+ .+ .++...=+|-.....++|.++
T Consensus 84 ~~l~~pff~~v~~pll--------~~n~~--lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai 153 (412)
T PF01306_consen 84 LLLFGPFFIYVFGPLL--------QSNFW--LGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAI 153 (412)
T ss_dssp HHTCHHHHHHTHHHHH--------HTT-H--HHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHH--HHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHH
Confidence 2 1 222222222111 00000 1111111111222222222 11 111112345566677777777
Q ss_pred HhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhH
Q 011056 182 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 261 (494)
Q Consensus 182 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (494)
+..++|.+ +.. +-...|++.....++..++.+...|+.+++.+..+ .++.++++.+
T Consensus 154 ~s~~~G~L-----~~i-----------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~--------~~~~~~~~~~ 209 (412)
T PF01306_consen 154 ASLLAGIL-----FNI-----------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD--------ALGAKKDKVS 209 (412)
T ss_dssp HHHHHHHH-----HHH-----------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST--------TSSS------
T ss_pred HHHHhhee-----eee-----------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc--------ccccCCCCCc
Confidence 77777762 211 34566776655555444444444444433221110 0011123345
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 011056 262 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 341 (494)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 341 (494)
.++..+.+|+ |++|.+.+........+..+...++.|.. ..++. -+.+.+.-........+..++.-.+.
T Consensus 210 ~~~~~~l~k~--~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~-~~f~~-------~~~g~~~~G~l~s~~v~~E~~~m~~~ 279 (412)
T PF01306_consen 210 LKDVLSLFKM--RNFWFFVLFVIGVAAIYDVFDQQFPIYFA-SFFQS-------AGQGNQMYGYLWSVQVFLEALMMFFS 279 (412)
T ss_dssp HHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSSS-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcc-------cccChhHHhHHHHHHHHHHHHHHHHH
Confidence 6788889999 99998877665555555554444444443 22210 01122222233445667788889999
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcc
Q 011056 342 EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 421 (494)
Q Consensus 342 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 421 (494)
+++.+|+|.|+.++++..++.+-....++.+ +++.+...-.+.++-.+.......-++++.+|
T Consensus 280 p~li~rig~k~~Lllag~i~~iRi~~~~~~~-----------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd 342 (412)
T PF01306_consen 280 PWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-----------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFD 342 (412)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999988888874 57788888999999999888888899999999
Q ss_pred cCCCCcchhhhHH-HHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCCCC
Q 011056 422 SLGLGQGLSLGVL-NLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQK 489 (494)
Q Consensus 422 ~~~~~~g~~~g~~-~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 489 (494)
+ |..++.+.+. +...+++..+.+.+.|.++|..| +..++++.+.+.+...++..+..++++++.
T Consensus 343 ~--rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G--~~~tylimg~iv~~~~li~~f~l~~~~~~~ 407 (412)
T PF01306_consen 343 K--RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG--FQHTYLIMGLIVLPFTLISAFTLKKDKKQI 407 (412)
T ss_dssp G--GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred H--hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC--cHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence 8 8888888874 68899999999999999999998 677888888888887777777766655543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-23 Score=196.94 Aligned_cols=351 Identities=13% Similarity=0.081 Sum_probs=222.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCc----chhHHHHHHHHHHHH
Q 011056 40 AGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRR----RPFIVCGAISIAVAV 115 (494)
Q Consensus 40 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr----~~~l~~~~~~~~~~~ 115 (494)
.++..++++...+++|.+.+++|.|..++|++.+++.+...+++|++|+++| |+||| |.+++ ... +...
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~d----r~g~~~~~~~~~~~-~~~--~~~~ 85 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVK----DPSQLIPALRLLAL-LTL--LFAV 85 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHh----hhcchHHHHHHHHH-HHH--HHHH
Confidence 4444456778888999999999999999999999999999999999999999 88884 32222 111 1122
Q ss_pred HHHhhccccccccCCCCCCcchHHHHHHHHHHhhcccc----ccccc-cccchhhHHhHHHHHHHHHHHHHHhhhccccc
Q 011056 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVAN----NMTQG-KDHRRTRVANAYFSLFMAVGNILGYATGSFSG 190 (494)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~ 190 (494)
.....++++ +...+.+...+...... ..... .+++|++ ..+......++|..+|+.+++++
T Consensus 86 ~~~~~~~~~------------~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~~~~-a~~~~~~~~~lg~~igp~lgg~l- 151 (382)
T PRK11128 86 AFWFGAHSF------------WLLFVAIGLFNLFFSPLVPLTDALANTWQKQIGL-DYGKVRLWGSIAFVIGSALTGKL- 151 (382)
T ss_pred HHHHhcccH------------HHHHHHHHHHHHHHcccccHHHHHHHHHHhhccC-CcchHHHHHHHHHHHHHHHHHHH-
Confidence 223233444 22222222222211111 11111 2334554 77788888899999999998873
Q ss_pred ccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhh
Q 011056 191 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFR 270 (494)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (494)
..+ .+||..|++.++...+..+ ..+..||++++++++ ++. ++..++.++.+|
T Consensus 152 ----~~~----------~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~------~~~~~~~~~i~~ 203 (382)
T PRK11128 152 ----VSW----------FGEQAILWILTAGVASMLL-GQLLRPTIMPQGESR-------QQE------SAGWPAWKALLK 203 (382)
T ss_pred ----HHH----------cChhHHHHHHHHHHHHHHH-HHHccCCCCCccccc-------ccc------ccccchHHHHHc
Confidence 111 1789888877754444433 333444432211110 000 001123445566
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011056 271 YFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA 350 (494)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~ 350 (494)
+ |+++..+...++..........+.+.|+.+ .+.+.. ..+ .......+..++..++.+++.||+++
T Consensus 204 ~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~g~s~~---------~~g-~~~~~~~~~~~~~~~~~g~l~~r~~~ 269 (382)
T PRK11128 204 E--PTVWRFLLCVSLLQGSHAAYYGFSAIYWQA--AGYSAS---------TIG-YLWSLGVVAEVLIFAFSNRLFRRWSA 269 (382)
T ss_pred C--hhHHHHHHHHHHHHHHhHhHHHHHHHHHHH--CCCCHh---------HHH-HHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 6 788877776666666655666677777742 222211 122 22334566778888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchh
Q 011056 351 GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLS 430 (494)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 430 (494)
|+.+..+.++.+++.+.+...+ +.+..++..++.|++.+...+....+..+. ++ +++++.
T Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~--~~~~~~ 329 (382)
T PRK11128 270 RDLLLLSAICGVVRWGLMGSTT-----------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG--SEVIRL 329 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH--hhhHHH
Confidence 9999888888887776665542 456667778888998888777777777665 44 556888
Q ss_pred hhHHH-HHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHH
Q 011056 431 LGVLN-LAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGL 476 (494)
Q Consensus 431 ~g~~~-~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~ 476 (494)
.+..+ ....+|..+||.++|.+.|..| . ..+...+++.+++.+
T Consensus 330 ~~~~~~~~~~~g~~ig~~i~G~l~~~~g--~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 330 QALYSALAMGGSIAIMTVLSGFLYQHLG--A-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--H-HHHHHHHHHHHHHHH
Confidence 88876 5567788999999999999987 3 355555555554433
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-24 Score=199.14 Aligned_cols=380 Identities=15% Similarity=0.129 Sum_probs=233.0
Q ss_pred HHhC--CCchhH----HHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCC
Q 011056 59 QELG--IPHAWA----SIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (494)
Q Consensus 59 ~~~g--~s~~~~----g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (494)
+.+| .++++. +.+.+++.+++++++.+.|.++| |+|||..+++ ..+...++.++..++......
T Consensus 47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~----~~GRK~~l~~-~~~l~~~~~~~~~~s~~~~~~----- 116 (485)
T KOG0569|consen 47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD----RFGRKNALLL-SNLLAVLAALLMGLSKSAPSF----- 116 (485)
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchHHHHH-HHHHHHHHHHHHHHHHHhhhH-----
Confidence 4455 555544 45556899999999999999999 9999976665 444555555554444322100
Q ss_pred CCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccc
Q 011056 133 DFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCAN 209 (494)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 209 (494)
+.....+.+.++..++.......... |++.|+. .......+..+|..++..++. ..+++ + ...
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~-~g~~~~~~~~~g~ll~~~~~l----~~ilG---t------~~~ 182 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGA-LGTLLQIGVVIGILLGQVLGL----PSLLG---T------EDL 182 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccH-HHHHHHHHHHHHHHHHHHHcc----HHhcC---C------Ccc
Confidence 11223333333333333333333333 7777776 777777777777777766642 22232 1 125
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCCCCCCC-CCCCCC--------------cccccc---------chhhhhhHHHHH
Q 011056 210 LKSAFFLDVIFIAITTCISASAAHEVPLGSHD-QSAPFS--------------EEGHEQ---------SSDVHEAFLWEL 265 (494)
Q Consensus 210 ~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~--------------~~~~~~---------~~~~~~~~~~~~ 265 (494)
|++.+....+..++. ++.+.++||+|+..-. +++.++ +++.++ .++.++.+++++
T Consensus 183 W~~l~~~~~i~~~~~-l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~ 261 (485)
T KOG0569|consen 183 WPYLLAFPLIPALLQ-LALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQL 261 (485)
T ss_pred hHHHHHHHHHHHHHH-HHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHH
Confidence 777777666555444 4456789999985322 111100 000000 000122234444
Q ss_pred HHHhhhchHHHHHHHHHHHHHHH-HHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011056 266 FGTFRYFSGTIWIILIVTALTWL-GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 344 (494)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l 344 (494)
++.-.. ++.....+...+.+.+ +......|.+..+.+.. .+. ..+.+.....++...+.++++.++
T Consensus 262 ~~~~~l-R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG--~~~----------~~a~~an~~~g~v~~~~t~~~~~l 328 (485)
T KOG0569|consen 262 LKNPTL-RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG--FTP----------EEAQYANLGIGIVNLLSTLVSPFL 328 (485)
T ss_pred hcCcch-hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC--CCH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432222 2333344444444443 44455555555543211 111 122344555677889999999999
Q ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhh-hhchhhhHhhhcccC
Q 011056 345 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT-YSVPYALVSIRTESL 423 (494)
Q Consensus 345 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 423 (494)
+||.|||++++.+..++.+..+++......++.. . ..-.+..+++.+++.+.++.. .|+++-+.+|++|+
T Consensus 329 id~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~-------~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~- 399 (485)
T KOG0569|consen 329 IDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF-------G-SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQ- 399 (485)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-------h-hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCc-
Confidence 9999999999999998888887776654322221 0 001123345555555555554 48999999999999
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCCCC
Q 011056 424 GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQK 489 (494)
Q Consensus 424 ~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 489 (494)
+.|..++++...++.+..++-......+.+..| . ..|++..+.+.+..+..++..||+|.+.
T Consensus 400 -~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g--~-~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 400 -SARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG--P-YVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--c-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 999999999999999999999999999999988 2 6777888888888899999999999764
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-23 Score=197.09 Aligned_cols=379 Identities=12% Similarity=0.041 Sum_probs=235.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHH
Q 011056 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (494)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~ 112 (494)
++.++..++...+.+....+.+|.+.+++|+|+.+.|++.+.+.++..+++++.|++.| |+||||.++. +.++.+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~----r~G~r~~~~~-g~~l~~ 79 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMK----KLSYKAGILL-GLFLYA 79 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHH-HHHHHH
Confidence 44555566666667777778899999999999999999999999999999999999999 9999887766 666666
Q ss_pred HHHHHHhhc---cccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhc
Q 011056 113 VAVLLIGLS---ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATG 186 (494)
Q Consensus 113 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g 186 (494)
++.+++..+ +++. .......+.+++.+......+.... +++++.+ +.+..+...++|..+|+.++
T Consensus 80 ~g~~l~~~~~~~~~~~--------~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lG~~~g~~i~ 150 (410)
T TIGR00885 80 LGAFLFWPAAEIMNYT--------LFLVGLFILTAGLGFLETAANPYILVMGPESTATR-RLNLAQSFNPFGSIIGMVVA 150 (410)
T ss_pred HHHHHHHHHHhhccHH--------HHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 666664332 3441 1112234445555555555454443 5566666 88999999999999999987
Q ss_pred ccccccccchhh------h-----cccccccccchhHHHHHHHHHHHHHHHHHh-hcccCCCCCCCCCCCCCCccccccc
Q 011056 187 SFSGWFKILPFT------L-----TSACNVDCANLKSAFFLDVIFIAITTCISA-SAAHEVPLGSHDQSAPFSEEGHEQS 254 (494)
Q Consensus 187 ~~~~~~~~~~~~------~-----~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~ 254 (494)
+.+.....-+.. . .........+||+.|.+.+++.++..++.. ...||.++ +++ ++ +
T Consensus 151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--~~~------~~-~-- 219 (410)
T TIGR00885 151 QQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--SDA------KQ-I-- 219 (410)
T ss_pred HHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--ccc------cc-c--
Confidence 653110000000 0 000000113699999888776665544332 22232111 000 00 0
Q ss_pred hhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHH
Q 011056 255 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 334 (494)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (494)
+. ..+..+.+|+ |+++..++..++..........|++.|..+...+.+ .+ .............
T Consensus 220 --~~---~~~~~~~~~~--~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~--------~~--~a~~~~~~~~~~~ 282 (410)
T TIGR00885 220 --SF---SASLSRLARI--RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMT--------AG--FAANYNIGAMVIF 282 (410)
T ss_pred --cc---hhhHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--------HH--HHHHHHHHHHHHH
Confidence 01 1122344555 667666666666555555666777887743221111 11 1111122223456
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhh
Q 011056 335 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 414 (494)
Q Consensus 335 ~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 414 (494)
.+++++.+++.||+++|+++.++..+..++.++.... ++ ......+.+.|++.+..+|..++
T Consensus 283 ~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~--------------~~----~~~~~~l~~~glf~s~~fp~i~s 344 (410)
T TIGR00885 283 FISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA--------------GG----HVGLYCLTLCSAFMSLMFPTIYG 344 (410)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--------------CC----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999888877777776666654 21 22356667778888888899999
Q ss_pred hHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC----CCCcchHHHHHHHHHHHH
Q 011056 415 LVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG----GGNSPAFAVGGISALAGG 475 (494)
Q Consensus 415 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g----~~~~~~~~~~~~~~~i~~ 475 (494)
+..+..++ +....+.++. +. .+|+++.|.+.|.+.|..| ++....|++...+.+...
T Consensus 345 l~~~~~g~--~~~~~s~~l~-~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (410)
T TIGR00885 345 IALKGLGQ--DTKYGAAGLV-MA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVIF 405 (410)
T ss_pred HHHhhhhh--hhhhhHHHHH-HH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHHH
Confidence 99998886 4433233333 32 3999999999999999642 124556666555444443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-23 Score=194.86 Aligned_cols=335 Identities=19% Similarity=0.184 Sum_probs=245.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHH
Q 011056 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (494)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~ 118 (494)
..+...+.+....+..+.+.+++|.++.+.+++.++..+...+++|+.|+++| |+||||.++. +.+...++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d----~~g~r~~~~~-~~~~~~~~~~~~ 81 (352)
T cd06174 7 GFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD----RFGRRRVLLL-GLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhCCchhhHH-HHHHHHHHHHHH
Confidence 33444456666777889999999999999999999999999999999999999 9999996555 666667777777
Q ss_pred hhccccccccCCCCCCcchHHHHHHHHHHhh----ccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccc
Q 011056 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWIL----DVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 191 (494)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~ 191 (494)
...+++ ..........+.. ......... ++++|.+ ..++......+|..+++.+++..
T Consensus 82 ~~~~~~------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~-- 146 (352)
T cd06174 82 AFASSL------------WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGR-ALGLFSAGFGLGALLGPLLGGLL-- 146 (352)
T ss_pred HHhccH------------HHHHHHHHHHHcccccccHhHHHHHHHhCCccchhh-hhhHHHHHHHHHHHHHHHHHHHH--
Confidence 676665 2222222222222 111112211 6667776 99999999999999999987752
Q ss_pred cccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhh
Q 011056 192 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRY 271 (494)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (494)
... .+|++.+.+.++..++..+...+. +
T Consensus 147 ---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------------------- 174 (352)
T cd06174 147 ---AES----------LGWRWLFLILAILGLLLALLLLFL-L-------------------------------------- 174 (352)
T ss_pred ---HHH----------hhHHHHHHHHHHHHHHHHHHHHHH-H--------------------------------------
Confidence 111 158888888877666655544332 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 011056 272 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG 351 (494)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~ 351 (494)
|.++......++..........+.+.+..+. ++.+. ...........+...++.++.+++.||+|+|
T Consensus 175 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 241 (352)
T cd06174 175 --RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV-LGLSA----------AEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241 (352)
T ss_pred --HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2334455555555666666666777777532 22111 1112334456778899999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchh
Q 011056 352 F-IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLS 430 (494)
Q Consensus 352 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 430 (494)
+ .+..+..+..++.+...... +.+...+...+.+++.+...+...+++.|..|+ +++++.
T Consensus 242 ~~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~ 302 (352)
T cd06174 242 RLLLLIGLLLAALGLLLLALAP-----------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP--EARGTA 302 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH--HHHHHH
Confidence 9 88888888888888776652 356677788889999999999999999999998 999999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHh
Q 011056 431 LGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 431 ~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
+|+.+....+++.++|.+.|.+.+..+ +...+.+.+++.+++.+...
T Consensus 303 ~~~~~~~~~~~~~i~~~i~g~l~~~~~--~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 303 SGLFNTFGSLGGALGPLLAGLLLDTGG--YGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccC--cchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999998765 67778888887777766544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-22 Score=192.50 Aligned_cols=372 Identities=15% Similarity=0.071 Sum_probs=213.4
Q ss_pred HHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHH--HHHHHHHhhhhccccce-ecccccCCCCCcchhHHHHHHH
Q 011056 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII--WLCGPVSGLFVQPLVGH-FSDRCTSRFGRRRPFIVCGAIS 110 (494)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~--~~~~~~~~~i~~~~~G~-l~D~~~~r~Grr~~~l~~~~~~ 110 (494)
..+....+...+.++...+.+|.+.++.|.|.+++|++ .+++.+...+.+|+++. .+| |+||||.+++...+.
T Consensus 4 ~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~----~~g~r~~~i~~~~~~ 79 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSW----RLGRRRSWVLPMQCL 79 (390)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc----cCCcchhHHHHHHHH
Confidence 34555666666777888899999999999999999997 46778888889998844 688 999999987655443
Q ss_pred HHHHHHHHh-hccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHH----HHHHHHHHHHHH
Q 011056 111 IAVAVLLIG-LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAY----FSLFMAVGNILG 182 (494)
Q Consensus 111 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~----~~~~~~~g~~~g 182 (494)
......... +.... ....+...............+.... .++.|++ ..+. ...+..+|..+|
T Consensus 80 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~-~~~~~~~~~~~g~~lG~~~g 149 (390)
T TIGR02718 80 VSACLASLALVGPDV---------AGAGWAVGLLACASLASATQDIATDGMAAEHFNGR-TLAKGNAVQIAGVMIGFFGG 149 (390)
T ss_pred HHHHHHHHHcCCcch---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh-hhhHHHHHHHHHHHHHHHHH
Confidence 332222222 21111 0001111111111111111211111 2333333 3333 444445555555
Q ss_pred hhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHH
Q 011056 183 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 262 (494)
Q Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (494)
+...+.+ .+. .+||..|++.+++.++..+..++..||++++ +++ ++...
T Consensus 150 ~~~~~~l-----~~~----------~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~-~~~---------------~~~~~ 198 (390)
T TIGR02718 150 GAGTLVL-----FGK----------FGQRPAFLLVACVPLASLVCVLWLKDRAVAS-PEA---------------PLARR 198 (390)
T ss_pred HHHHHHH-----HHH----------hCHHHHHHHHHHHHHHHHHHHHHcCCCCcCc-ccc---------------chhhH
Confidence 5433221 111 1799999999877766655554443332211 100 00112
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHH
Q 011056 263 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 342 (494)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 342 (494)
++.++.+|+ |.++..+...++...+......+.+.|+.+ . +.++. ..+.+.........+++.++.|
T Consensus 199 ~~~~~~l~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~-G~s~~---------~ig~~~~~~~~~~~~~g~~~~g 265 (390)
T TIGR02718 199 ASLFRFFRR--PLAWSLLALALLSAMTAVSGFGLSKLYLVD-A-GWPLE---------WIGRLGMAGGAVTVLLGCGGGA 265 (390)
T ss_pred HHHHHHHcC--cCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-c-CCCHH---------HHHHHHhHHHHHHHHHHHHHHH
Confidence 244556666 666666666666666566666677777753 2 22221 1222212222235567788999
Q ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhccc
Q 011056 343 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 422 (494)
Q Consensus 343 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 422 (494)
++.||+|+|+.+..+..+.++..+....... . ..............+.++..+...+..++...+..++
T Consensus 266 ~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 334 (390)
T TIGR02718 266 WLVRRAGLWRTFILGVGLAGSLALLWFAQAA---F--------WLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGD 334 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---c--------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999988776655333332222110 0 0000222233333444555666666666666666553
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHH
Q 011056 423 LGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLI 477 (494)
Q Consensus 423 ~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~ 477 (494)
+ +.+|+.+++.+....+|..++|.++|.+.|..| +...|...+++.+++.+.
T Consensus 335 ~-~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G--~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 335 G-DQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG--YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHH
Confidence 1 688999999999999999999999999999877 666777777666665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=206.81 Aligned_cols=360 Identities=10% Similarity=-0.034 Sum_probs=217.2
Q ss_pred HhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhc--cccccccCCCCCCcch
Q 011056 60 ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS--ADIGWLLGDRGDFRPR 137 (494)
Q Consensus 60 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 137 (494)
+++++..+.|++.+.+.+++.+++++.|+++| |+|||+.+.. +.+...++.++..++ .++ .
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~l~~-~~~~~~~~~~~~~~~~~~~~------------~ 132 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAG----KYVFKWSIGI-GMFLSSVISIVIPWAAGGGI------------A 132 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHH----HhCcchhhHH-HHHHHHHHHHHHHHHHHcCc------------h
Confidence 78999999999999999999999999999999 9999987666 555555555554332 223 2
Q ss_pred HHHHHHHHHHhhcccc----ccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccch
Q 011056 138 AIAVFVFGFWILDVAN----NMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANL 210 (494)
Q Consensus 138 ~~~~~~~~~~~~~~~~----~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 210 (494)
.+++.++..++..... ..... ++++|++ +.++...+..+|..+++.+++.+... . .+|
T Consensus 133 ~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~i~~~l~~~l~~~--~------------~gw 197 (465)
T TIGR00894 133 LVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSR-LLGMSTSGFQLGTFIFLPISGWLCES--W------------GGW 197 (465)
T ss_pred HHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc--c------------CCC
Confidence 2333334333332221 11222 6677776 99999999999999999887652110 0 178
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcc--ccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 011056 211 KSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE--GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWL 288 (494)
Q Consensus 211 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (494)
|+.|++.++..++..++.+...+|+|+..++..+.+++. +..++++.+.+....+++.+++ +.+|..++..+....
T Consensus 198 ~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 275 (465)
T TIGR00894 198 PMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKS--LPVWAIWFAIFGHFW 275 (465)
T ss_pred CeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcC--HHHHHHHHHHHHHHH
Confidence 999999888777776666666777664332211110000 0000000000001123445566 788888888888888
Q ss_pred HHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH--------HHHHHH
Q 011056 289 GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW--------GISNIL 360 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~--------~~~~~~ 360 (494)
....+..|.|.|+.+. ++.+.. ...+......++..++.++.|++.||+++|+.. ..+...
T Consensus 276 ~~~~~~~~lp~~l~~~-~g~s~~----------~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 344 (465)
T TIGR00894 276 LYTILPTYLPTFISWV-LRVSGK----------ENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGG 344 (465)
T ss_pred HHHHHHHHHHHHHHHH-hCcChH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 8888888899998643 332221 112333345667889999999999998644221 111111
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHH
Q 011056 361 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVI 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 440 (494)
...+...+.... . .. +.+..++.+.+.+.+.+...+.......|..| +..|.+.|+.+....+
T Consensus 345 ~~~~~~~~~~~~----~--------~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~g~~~g~~~~~~~l 407 (465)
T TIGR00894 345 LGPGIFAYALPY----L--------SA--AFYLTIIILTLANAVSSGPLAGVLINSLDLAP---RFLGFIKGITGLPGFI 407 (465)
T ss_pred HHHHHHHHHHHH----c--------CC--chHHHHHHHHHHHHHhhhhhhhhhhchhhcCh---hHHHHHHHHHHHHHHH
Confidence 111111111110 0 00 22333334444444444334344444455555 6899999999999999
Q ss_pred HHHHHhhhhhhhhhhcCC-CCcchHHHHHHHHHHHHHHHhhc
Q 011056 441 PQIVVSMGSGPWDQLFGG-GNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 441 g~~l~~~~~g~l~~~~g~-~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
++.++|.+.|.+.+..+. .+...|.+.++..+++.++....
T Consensus 408 ~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 408 GGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 999999999998875321 24456777777777776665544
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=196.83 Aligned_cols=350 Identities=12% Similarity=0.063 Sum_probs=208.7
Q ss_pred HHhhhHHHHHHHHHHHhHHH-HHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHH
Q 011056 37 ASVAGGIQFGWALQLSLLTP-YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (494)
Q Consensus 37 ~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~ 115 (494)
....+.....+....+++|. +.+++|+|+.+.+++.+++.++..+++++.|+++| |+||||.++. +.+...++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~i~~ 81 (366)
T TIGR00886 7 WFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVD----KFGPRYTTTL-SLLLLAIPC 81 (366)
T ss_pred HHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHH----HhCchHHHHH-HHHHHHHHH
Confidence 33333334455666678885 77899999999999999999999999999999999 9999887766 666777777
Q ss_pred HHHhhcc-ccccccCCCCCCcchHHHHHHHHHHhhcccccc---ccc---cccchhhHHhHHHHHHHHHHHHHHhhhccc
Q 011056 116 LLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNM---TQG---KDHRRTRVANAYFSLFMAVGNILGYATGSF 188 (494)
Q Consensus 116 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~ 188 (494)
+++.+++ ++. ...+..+..++....... ... ++++|++ +.++.....++|..+++.+++.
T Consensus 82 ~~~~~~~~~~~------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 82 LWAGLAVQSYS------------VLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGT-ALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred HHHHHHhhhHH------------HHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 7777777 662 222222222221111111 111 5667776 8888887788888887777654
Q ss_pred ccccccchhhhcccccccccchhHHH-HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHH
Q 011056 189 SGWFKILPFTLTSACNVDCANLKSAF-FLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFG 267 (494)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (494)
+ ........++....+||+.| ...+++..+..++.+...+|.|++++++++.+..++.+ ...+...++..+
T Consensus 149 l-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 220 (366)
T TIGR00886 149 I-----IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARW---SVGTGALGDQLK 220 (366)
T ss_pred H-----HHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccc---cccchhHHHHHH
Confidence 2 11110000001112789988 44455444444445555666554322211111000000 001112224455
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011056 268 TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 347 (494)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr 347 (494)
.+++ ++++...+..++.+........+.+.|+.+ .++.++. ..........+..+++.++.+++.||
T Consensus 221 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~~r 287 (366)
T TIGR00886 221 VFRD--RHTWILALLYSVTFGSFLGVSSIFAMFFKD-QFGLSKV----------TAGAYASLGGLLGSLARPLGGAISDR 287 (366)
T ss_pred HHhc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHH----------HHHHHHHHHHHHHHHHhhccchHHHh
Confidence 5666 667766666666655556666677777753 3332221 11222344566778899999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCc
Q 011056 348 WGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 427 (494)
Q Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (494)
+|+|+.+..+......+..++.... ....+.+.......+.++..+...+..+++..+..| +++
T Consensus 288 ~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~ 351 (366)
T TIGR00886 288 LGGARKLLMSFLGVAMGAFLVVLGL-------------VSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR---RAT 351 (366)
T ss_pred hccchhHHHHHHHHHHHHHHHHhcC-------------CCcchHHHHHHHHHHHHHHhccccchhhhcchhhch---hhc
Confidence 9999888777666655555544431 110023333444445555556555666777778776 789
Q ss_pred chhhhHHHHHHHHH
Q 011056 428 GLSLGVLNLAIVIP 441 (494)
Q Consensus 428 g~~~g~~~~~~~~g 441 (494)
|+++|+.+....+|
T Consensus 352 g~~~g~~~~~~~~g 365 (366)
T TIGR00886 352 GAVSGLVGAIGNLG 365 (366)
T ss_pred ccHHHHHHHhccCC
Confidence 99999988876654
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=191.72 Aligned_cols=342 Identities=12% Similarity=0.052 Sum_probs=208.7
Q ss_pred HHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccC-CCCCcchhHHHHHHHHHHHHHHHhhcccccc
Q 011056 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTS-RFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (494)
Q Consensus 48 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~-r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~ 126 (494)
....+.+|.+.+++|+|.+++|+..++ .+...+ .+++|+++||++. |+||||++++.+.+..++.....++.++..
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~- 81 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST- 81 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch-
Confidence 344567889999999999999999766 444444 9999999996643 469999987767777776766665654431
Q ss_pred ccCCCCCCcchHHHHHHHHHHh----hccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhh
Q 011056 127 LLGDRGDFRPRAIAVFVFGFWI----LDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTL 199 (494)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~ 199 (494)
.. .......+.... .+........ ++++|++ +.++...+.++|.++++.+++.+ .+...
T Consensus 82 -------~l-~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~-~~~~~~~~~~~G~~~~~~l~~~l-----~~~~g 147 (356)
T TIGR00901 82 -------DL-PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGY-GSTIYIVGYRAGMLLSGSLALVL-----ASPEF 147 (356)
T ss_pred -------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhch-HHHHHHHHHHHHHHHHHHHHHHH-----hhhcc
Confidence 11 111111111111 1232333332 6777776 99999999999999999887652 11111
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhch-HHHHH
Q 011056 200 TSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS-GTIWI 278 (494)
Q Consensus 200 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 278 (494)
. .....++||..|++.++..++..++.++..||+++.++++ ++ .+++..+.+.+.+++.. +.++.
T Consensus 148 ~--~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~~ 213 (356)
T TIGR00901 148 A--NTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP---------KP---LTQAVLKPIREFFQRKNMIQALL 213 (356)
T ss_pred c--ccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc---------hh---HHHHHHHHHHHHHHhcCchHHHH
Confidence 0 0111235999999988877766555555566643211100 00 01111122233333311 23555
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 011056 279 ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISN 358 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~ 358 (494)
..+..++...+......+.+.|+.+ ++.++. +.+.+......+..+++.++.+++.||+|+|+.+..+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~---------~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~ 282 (356)
T TIGR00901 214 LLLLIVLYKLGDSAATVLTTLFLLD--MGFSKE---------EIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFG 282 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHH---------HHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5555555666666666777877753 332221 11222222233556788999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHH
Q 011056 359 ILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAI 438 (494)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 438 (494)
++.+++..++.+.....++. + .+ ..+.+......++.+++.+...+...+++.|.+|+ +++|+.+|+.+...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~----~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 283 IVQALTNAGFVWLASNGHHD----G-IT-FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP--KFGATQMALLSSLS 354 (356)
T ss_pred HHHHHHHHHHHHHHhcCccc----c-cc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--CccHHHHHHHHHHH
Confidence 77777666554431000000 0 00 01345556666777888898899999999999999 99999999987765
Q ss_pred H
Q 011056 439 V 439 (494)
Q Consensus 439 ~ 439 (494)
.
T Consensus 355 ~ 355 (356)
T TIGR00901 355 A 355 (356)
T ss_pred h
Confidence 3
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-21 Score=186.36 Aligned_cols=364 Identities=14% Similarity=0.061 Sum_probs=236.6
Q ss_pred hhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHH
Q 011056 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFG 145 (494)
Q Consensus 66 ~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (494)
+..++..++..+..++..|+.|.++| +-|+||.++.....+.+++..++.+.++- ......++..++
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD----~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~---------~~~~~~~l~iia 136 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIAD----YGGRRKRFLLIFTLLGVLATALLWFVSPG---------QWWLALVLFIIA 136 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----ccccchHHHHHHHHHHHHHHHHHHHhCcc---------hHHHHHHHHHHH
Confidence 34577888999999999999999999 99999988887777777777766664321 112223333333
Q ss_pred HHh---hccccccccc---cccch--------------------------hhHHhHHHHHHHHHHHHHHhhhcccccccc
Q 011056 146 FWI---LDVANNMTQG---KDHRR--------------------------TRVANAYFSLFMAVGNILGYATGSFSGWFK 193 (494)
Q Consensus 146 ~~~---~~~~~~~~~~---~~~~r--------------------------~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~ 193 (494)
... ....++...+ +++++ .+ ..+.-.....+|.++...+.-..
T Consensus 137 ~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vS~~G~a~Gy~G~~v~l~i~l~~---- 211 (477)
T PF11700_consen 137 NVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGR-VSGLGWALGYIGGLVALLISLLL---- 211 (477)
T ss_pred HHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhch-hHHHHHHHHHHHHHHHHHHHHHH----
Confidence 322 3444555554 33322 33 55554445555555544432210
Q ss_pred cchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhc-
Q 011056 194 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYF- 272 (494)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 272 (494)
........+...+.|..+.+.++..++..+..++++||+|+.+..+. .....+..++++++.+|+.
T Consensus 212 ---~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~----------~~~~~~~g~~~l~~t~k~~~ 278 (477)
T PF11700_consen 212 ---VISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPS----------GSSYLRFGFKRLWRTFKEIR 278 (477)
T ss_pred ---HHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCc----------chhHHHHHHHHHHHHHHHHH
Confidence 00000001122357889999999988888989999999876322110 0111234455555555443
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 011056 273 -SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG 351 (494)
Q Consensus 273 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~ 351 (494)
.|+...+++..++..-+...+......|..++ ++.+..+ . ....+...+.+++++++.+++.||+|.|
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~-lg~s~~~---------l-~~~~l~~~i~a~~Ga~~~g~l~~r~g~k 347 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEV-LGMSTTQ---------L-IVFGLVVQIVAIIGALLFGWLQDRFGPK 347 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCHHH---------H-HHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 25666777777777767777776666666433 3333221 1 1223445778899999999999999998
Q ss_pred --HHHHHHHHHHHHHHHHHHH--HHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCc
Q 011056 352 --FIWGISNILMALCFLAMLI--LYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 427 (494)
Q Consensus 352 --~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (494)
+++..+..+..+..+.-.+ ... . ....+.+.+.+..++.|+..|...+...++.+++.|+ +++
T Consensus 348 ~~~~l~~~l~~~~~i~~~g~~G~~~~---~--------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~--g~e 414 (477)
T PF11700_consen 348 TKRTLLISLILWIIIPLYGLFGFWPS---F--------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP--GRE 414 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc---c--------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--chh
Confidence 7777666555333332222 110 0 0111467788888899999999999999999999999 888
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCC
Q 011056 428 GLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 486 (494)
Q Consensus 428 g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 486 (494)
+..+|++++.......+||++.|.+.+..| +....+....++.+++.++..+ .+.+|
T Consensus 415 ~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~ll~~-v~~~~ 471 (477)
T PF11700_consen 415 AEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLILLFF-VDVEK 471 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHhh-ccchh
Confidence 999999999999999999999999999987 4566777777777777666544 34333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-22 Score=189.68 Aligned_cols=330 Identities=13% Similarity=0.099 Sum_probs=208.5
Q ss_pred HHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccccccc
Q 011056 49 LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (494)
Q Consensus 49 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 128 (494)
...+.+|.+.+++|+|.++.|++.+++.++..++.++.|+++| |+||||.+++ +.+...++.+.. ..++...
T Consensus 18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~~~~~-~~~~~~~-- 89 (355)
T TIGR00896 18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLAR----RFGEERSVAA-GLLLIAAGILIR-SAPGTAL-- 89 (355)
T ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhCchHHHHH-HHHHHHHHHHHH-HhccHHH--
Confidence 3456889999999999999999999999999999999999999 9999997766 555555555555 4455411
Q ss_pred CCCCCCcchHHHHHHHHHHhhccccccccc--cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhccccccc
Q 011056 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQG--KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 206 (494)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 206 (494)
......+.+++.+........... .+++|++ +.+......++|..+++.+++.+ ....
T Consensus 90 ------l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~i~~~~~~~l-----~~~~-------- 149 (355)
T TIGR00896 90 ------LFAGTALIGVGIAIINVLLPSLIKRDFPQRVGL-MTGLYSMALMGGAALAAAATVPL-----AQHS-------- 149 (355)
T ss_pred ------HHHHHHHHHHHHHHHhccchHHHHHhCcchhhH-HHHHHHHHHHHHHHHHHHHHHHH-----HHhh--------
Confidence 111122223333222222222222 3456665 89999999999999988876542 1110
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHH
Q 011056 207 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALT 286 (494)
Q Consensus 207 ~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (494)
..+||+.|...++..++... ...||.++++++++ +. .+. +.++.+|+ |.++..++..++.
T Consensus 150 ~~~w~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~~------~~------~~~---~~~~~~~~--~~~~~~~~~~~~~ 209 (355)
T TIGR00896 150 GGHWQQALAWWALPALLALL---AWIPQVRRRVAANQ------TT------TRL---TPVRIWRS--PLAWQVTVFFGLQ 209 (355)
T ss_pred hhhHHHHHHHHHHHHHHHHH---HHhhhhccccCCCC------CC------CCC---CCchhhcC--HhHHHHHHHHHHH
Confidence 01488888776554433322 22344322111110 00 000 11233455 6666665555555
Q ss_pred HHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh-cchHHHHHHHHHHHHHH
Q 011056 287 WLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAGFIWGISNILMALCF 365 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 365 (494)
...+.....|.+.++.+ .+.+.. ..........++.++++++.+++.||+ +||+....+..+.+++.
T Consensus 210 ~~~~~~~~~~lp~~~~~--~g~~~~----------~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 277 (355)
T TIGR00896 210 SGLYYSLIGWLPAILIS--HGASAA----------TAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL 277 (355)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCHH----------HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 55666666777877743 232221 122334456778899999999999999 45666667777777776
Q ss_pred HHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHH
Q 011056 366 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVV 445 (494)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~ 445 (494)
+.+.+.. . .... ....+.|++.+...+...+.+.+..+++ +++|...++.+....++..++
T Consensus 278 ~~~~~~~--------------~---~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~g 338 (355)
T TIGR00896 278 CGLLFAP--------------M---HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQA-AQAAALSAMAQSIGYLLAALG 338 (355)
T ss_pred HHHHHhh--------------h---hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 6555542 1 1111 2456778888888777666666554431 677899999999999999999
Q ss_pred hhhhhhhhhhcC
Q 011056 446 SMGSGPWDQLFG 457 (494)
Q Consensus 446 ~~~~g~l~~~~g 457 (494)
|.+.|.+.|..|
T Consensus 339 p~~~G~l~~~~g 350 (355)
T TIGR00896 339 PLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHhc
Confidence 999999999887
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-21 Score=187.44 Aligned_cols=362 Identities=21% Similarity=0.206 Sum_probs=233.3
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
++..+....++-+..++.-|+..++++..+..+...+..++.|.++| |+.|||.++..-.+..++...+..+. ..
T Consensus 24 lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laD----r~drrrili~~~~~~~~~~~~L~~l~-~~ 98 (524)
T PF05977_consen 24 LGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALAD----RFDRRRILILSQLLRALVALLLAVLA-FF 98 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 44444445566667778889999999999999999999999999999 99999988775544433333322221 11
Q ss_pred ccccCCCCCCcchHHHHHHHHHHh----hccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchh
Q 011056 125 GWLLGDRGDFRPRAIAVFVFGFWI----LDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF 197 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~ 197 (494)
+ ....+.++...+..++ ...+.+...+ ++++-.+ ++++.++..++..++||.+||.+ +..
T Consensus 99 ~-------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~-A~al~s~~~niar~iGPalgG~L-----va~ 165 (524)
T PF05977_consen 99 G-------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPA-ANALNSISFNIARIIGPALGGIL-----VAF 165 (524)
T ss_pred C-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHH-HHHHHHHHHHHHHhccchHHHHH-----HHH
Confidence 0 1111222222222222 2333333333 4555555 99999999999999999999873 222
Q ss_pred hhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHH
Q 011056 198 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIW 277 (494)
Q Consensus 198 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (494)
. +..+.|.+.++..++..... ...|.++++.+.+ ++......++-++-.++. |.++
T Consensus 166 ~----------G~~~~f~inalsfl~~i~~l-~~~~~~~~~~~~~------------~e~~~~~l~~G~ryv~~~-~~l~ 221 (524)
T PF05977_consen 166 F----------GAAAAFLINALSFLISILAL-LRWKPPPPPSSLP------------RERFFSALREGLRYVRSS-PPLR 221 (524)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHH-HHccccccccccc------------hhhhhhhHHHHHHHHhcc-hHHH
Confidence 1 45667777766555544333 3333222111111 000112223333333332 4444
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q 011056 278 IILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGIS 357 (494)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~ 357 (494)
..+...++..+....+...+|.+.. +.++.++. .-.+.....++++++++++.+++.+|+++++++..+
T Consensus 222 ~~l~~~~~~~l~~~a~~aLlPl~a~-~~l~~~a~----------~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~ 290 (524)
T PF05977_consen 222 SVLLRSFLFNLFASAVWALLPLFAR-DVLGGGAS----------GYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLA 290 (524)
T ss_pred HHHHHHHHHHHhhhHHHHhhhHHHH-HHhCCcHH----------HHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHH
Confidence 4444444433333333344555543 33332221 112334456888999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHH
Q 011056 358 NILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLA 437 (494)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 437 (494)
.++.+++++.+.+.. +.+...+..++.|++.....+...+.+++..|+ +.+|+.++++++.
T Consensus 291 ~~~~a~~~~~lal~~-----------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~--~~~GRv~si~~~~ 351 (524)
T PF05977_consen 291 SLLFALALLLLALSP-----------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD--WVRGRVFSIYQMV 351 (524)
T ss_pred HHHHHHHHHHHhcch-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHhHHHHHHHHH
Confidence 888888887777763 467777788888999988888888999999999 9999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 438 IVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 438 ~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
...+..+|..+.|.+.+..| ....+.+.++..+++.++...
T Consensus 352 ~~g~~~lGsll~G~la~~~g--~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 352 FFGGMPLGSLLWGFLADHFG--VRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 566677776666666555543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=188.31 Aligned_cols=345 Identities=15% Similarity=0.114 Sum_probs=203.2
Q ss_pred HhHHHHHHHh--CCCchhHHHHHHH-----HHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 52 SLLTPYVQEL--GIPHAWASIIWLC-----GPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 52 ~~l~~~~~~~--g~s~~~~g~~~~~-----~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
...+.+.++. +.++++.+.+.+. ..+...+++++.|+++| |+||||.++. +.+...++.++.++++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~~~~~~~~~~~ 88 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGD----RIGRKKTLVI-TLLMMGIGTLLIGLLPSY 88 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh----hhhhHHHHHH-HHHHHHHHHHHHhhCCCh
Confidence 3444455553 3556666665553 33444578899999999 9999987776 666677777777787775
Q ss_pred ccccCCCCCCcch---HHHHHHHHHHhh----ccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhccccccccc
Q 011056 125 GWLLGDRGDFRPR---AIAVFVFGFWIL----DVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 194 (494)
Q Consensus 125 ~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~ 194 (494)
.. .... ...+.+...++. ......... ++++|++ ..+.......+|..+++.++..... .
T Consensus 89 ~~-------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~G~~i~~~~~~~~~~--~ 158 (394)
T TIGR00883 89 AT-------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGF-YGSFQQVGAPVGLLLAALTVLLLSY--L 158 (394)
T ss_pred hh-------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchH-HHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 21 0000 111222222221 111111122 5667766 8888988899999988887654210 0
Q ss_pred chhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchH
Q 011056 195 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSG 274 (494)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (494)
++ .. .....+||+.|.+.++..++... .....||+++.++++++ .++ .+. +..+.+++.++
T Consensus 159 ~~---~~--~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~----~~~---~~~~~~~~~~~ 219 (394)
T TIGR00883 159 LG---DD--ALLEWGWRIPFLVSAVLVLIGLY-LRRNLEETPVFEKAQEK------HKK----KRG---PIRETLTKHRK 219 (394)
T ss_pred cC---HH--HhhccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHHHHhc------ccc----ccC---CHHHHHHhchH
Confidence 00 00 00123799999887665554433 33445665432211100 000 011 22333444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Q 011056 275 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 354 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~ 354 (494)
.++......++..........+.+.++.++ ++.+.. ..........+...++.++.+++.||+|||+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (394)
T TIGR00883 220 PFLLGLGLVIATTTTFYLITTYLPTYLTQT-LGLSAN----------SALLVLMLSLILFFITIPLSGALSDRIGRRPVL 288 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChh----------HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 466665666666666666667777777433 222211 112223445667888899999999999999987
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 355 GISNILMALCF-LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 355 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
.....+..+.. ....... .. .+.+.......+.+++.+...+...+++.|.+|+ ++|+++.++
T Consensus 289 ~~~~~~~~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~ 352 (394)
T TIGR00883 289 IIFTVLAALLAVPLLMALL-------------DS-GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT--EVRYTGASL 352 (394)
T ss_pred HHHHHHHHHHHHHHHHHHh-------------cC-CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc--cceeeEeee
Confidence 65544443332 2222221 00 1344555566777888877888888999999998 889999987
Q ss_pred -HHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 434 -LNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 434 -~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
.+....++..++|.+.|.+.|..|
T Consensus 353 ~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 353 AYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred hhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 456677889999999999999876
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-21 Score=180.88 Aligned_cols=371 Identities=13% Similarity=0.137 Sum_probs=231.1
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHH
Q 011056 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (494)
Q Consensus 39 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~ 118 (494)
..+...+.++...++++.+.++.|+|..|+|.+.++..+...+.+|++|.++| |++++|.++....+..++.....
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aD----r~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIAD----RFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----HhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444456777778999999999999999999999999999999999999999 88765656554555555555454
Q ss_pred hhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc-----cccchhhHHhHHHHHHHHHHHHHHhhhcccccccc
Q 011056 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG-----KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 193 (494)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~ 193 (494)
...+++ .......+...+.......... .-+++++ -+|-.....++|.+++....+..
T Consensus 86 ~~~~~f------------~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~-~YG~iRlwGSiGf~~~~~~~~~~---- 148 (400)
T PF03825_consen 86 AFSSSF------------WWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGK-DYGRIRLWGSIGFIVAALAFGGL---- 148 (400)
T ss_pred HHhccH------------HHHHHHHHHHHHHHccHHHHHHHHHHHHcccccC-CCCcchhhhhHHHHHHHHHHHHH----
Confidence 454444 2222222222222111111111 1112222 45555566666666654321000
Q ss_pred cchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhch
Q 011056 194 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS 273 (494)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (494)
..+... ..+..+.+++.+...++.... .+.+|+.|++++.+++ .++...++.++.+|+
T Consensus 149 ~~~~~~-------~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~------------~~~~~~~~~~~llk~-- 206 (400)
T PF03825_consen 149 LGGYLG-------ISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKES------------VKKLLGLDALKLLKN-- 206 (400)
T ss_pred HHhhhc-------cccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCC------------cccccchHHHHHhcC--
Confidence 000000 002233455554444333322 2345665522221100 011223355677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
|++...++..++...+......|.+.|+.+.. +++. ........+..+..++.-...+++.+|+|.+++
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g---------g~~~--~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l 275 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELG---------GYSG--STIGILWALGVVAEIPFFFFSGRFLKRFGIKWL 275 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------cchh--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 88888888888888888888888888885321 0111 111223345667888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHH----HHHHHhhHhhhhhhchhhhHhhhcccCCCCcch
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALI----IFTILGGPLAITYSVPYALVSIRTESLGLGQGL 429 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 429 (494)
+.++.+..++-..++.... + +.+.... ...+.|+.++........++.+.+|+ +.+++
T Consensus 276 l~~a~~~~~vR~~l~a~~~-------------~---~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~--~~~at 337 (400)
T PF03825_consen 276 LLLALVAYAVRWLLYAYFS-------------D---PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP--ELRAT 337 (400)
T ss_pred HHHHHHHHHHHHHHHHHhc-------------C---CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc--cchHH
Confidence 9999999999998888762 1 1222222 23568999999998999999999999 99999
Q ss_pred hhhHHHH-HHHHHHHHHhhhhhhhhhhcCCCCc----chHHHHHHHHHHHHHHHhhc
Q 011056 430 SLGVLNL-AIVIPQIVVSMGSGPWDQLFGGGNS----PAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 430 ~~g~~~~-~~~~g~~l~~~~~g~l~~~~g~~~~----~~~~~~~~~~~i~~~~~~~~ 481 (494)
+.++++. ...+|..+|..++|++.|..|.... ..+.+.+++.++..++.+.+
T Consensus 338 ~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 338 AQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999876 4689999999999999999873221 12344444444444444433
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-21 Score=209.18 Aligned_cols=344 Identities=14% Similarity=0.057 Sum_probs=208.1
Q ss_pred hHHHHHHHhCCCc--hhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHH---Hhhccccccc
Q 011056 53 LLTPYVQELGIPH--AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL---IGLSADIGWL 127 (494)
Q Consensus 53 ~l~~~~~~~g~s~--~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~---~~~~~~~~~~ 127 (494)
..+.+..+++.+. ...+++.+++.++..++++++|+++| |+||||.+++.. ++.++..++ ...++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~D----r~grk~~l~~~~-~~~~~~~~~~~~~~~~~~~~-- 104 (1146)
T PRK08633 32 IQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLAD----KFSKNRVIRIVK-LFEVGLTLLIVLAYYLGWFW-- 104 (1146)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcc----cccHHHHHHHHH-HHHHHHHHHHHHHHHHccHH--
Confidence 4444556666654 45789999999999999999999999 999998776633 332222222 22333441
Q ss_pred cCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhccccc
Q 011056 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACN 204 (494)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~ 204 (494)
......++.+++.++.......... ++++|++ ++++...+.++|.++|+.+++++. .+.......
T Consensus 105 ------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~ig~~lg~~l~~~l~-----~~~~~~~~~ 172 (1146)
T PRK08633 105 ------LAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSR-ANGLLEAFTIVAILAGTALFSFLF-----ESVNGNTPS 172 (1146)
T ss_pred ------HHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchh-hhhHHHHHHHHHHHHHHHHHHHHH-----Hhhcccccc
Confidence 1111222222222222222222333 6777887 999999999999999999988731 110000000
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHH
Q 011056 205 VDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTA 284 (494)
Q Consensus 205 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (494)
.. .+|++.+.+..+...+..++..+.+||.++......+ . +... ..+...+.+...+++ +.++...+..+
T Consensus 173 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~---~~~~~~~~~~~l~~~--~~~~~~~~~~~ 242 (1146)
T PRK08633 173 EI-LGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFD--K--KKYL---FPKLLWRNLKLLRSD--RVLWLAIIGLS 242 (1146)
T ss_pred cc-ccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccc--c--cccc---cHHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 00 1334444443333333334444556776543322100 0 0000 011112233334444 66666655555
Q ss_pred HHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Q 011056 285 LTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALC 364 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 364 (494)
+.+........+++.++.+. ++.+.. . ...+......++.++++++.+++.||+++++.+.++.++.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~-~g~s~~--------~-~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 243 YFWFISQLAQANFPAYAKEV-LGLDNT--------F-QVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHhhHHHHHHH-hCCCcH--------H-HHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHH
Confidence 55555555556667776533 332221 0 1123344466778899999999999999988888887777777
Q ss_pred HHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHH
Q 011056 365 FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIV 444 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l 444 (494)
.+++.+.. +.+..++..+++|++.+...+...+++.+..|+ +.+|+++|+.+++..++..+
T Consensus 313 ~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~rg~~~~~~~~~~~lg~~~ 373 (1146)
T PRK08633 313 LFLLPTAP-----------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE--KELGKVLAANNFLQNVGMLL 373 (1146)
T ss_pred HHHHHHhh-----------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc--cchhhhhHHHHHHHHHHHHH
Confidence 76665552 355566777888888888887888899999998 89999999999999999988
Q ss_pred Hhhhhhhhhh
Q 011056 445 VSMGSGPWDQ 454 (494)
Q Consensus 445 ~~~~~g~l~~ 454 (494)
++.+++.+..
T Consensus 374 ~~~~~~~l~~ 383 (1146)
T PRK08633 374 FLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHH
Confidence 8877766544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-21 Score=186.50 Aligned_cols=403 Identities=14% Similarity=0.125 Sum_probs=229.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHHHH---hCCCchhHHHHHHHHHHHhhhhccccceecccccCC-CCCcchhHHHH
Q 011056 32 KLLKVASVAGGIQFGWALQLSLLTPYVQE---LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVCG 107 (494)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r-~Grr~~~l~~~ 107 (494)
.++.+....+...+++....+++|.|.++ +|+|..+.+++.+.+.+...++++++|+++| | +||||.+++ +
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laD----r~~G~~~~l~~-~ 85 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGD----RVWGTKKTMVL-G 85 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH----hhcchHHHHHH-H
Confidence 34444445555556666666788888754 8999999999999999999999999999999 9 899997766 6
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---ccc---chhhHHhHHHHHHHHHHHHH
Q 011056 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDH---RRTRVANAYFSLFMAVGNIL 181 (494)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~r~~~~~~~~~~~~~~g~~~ 181 (494)
.+..+++.++.+++++... ....+.+.+++.+..........+ +++ +|.+ +.++.....++|..+
T Consensus 86 ~~~~~~g~~~~~~~~~~~~--------~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~-~~~~~~~~~niG~~i 156 (475)
T TIGR00924 86 GIVLMLGHFMLAMSIYPDL--------IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDG-GFTLFYMSINIGSFI 156 (475)
T ss_pred HHHHHHHHHHHHhcccHhH--------HHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccc-eehhHHHHHHHHHHH
Confidence 6677777777777665411 111112222222222222222222 222 3555 889999999999999
Q ss_pred HhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhh---
Q 011056 182 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH--- 258 (494)
Q Consensus 182 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~--- 258 (494)
|+.+++.+. .. .+|++.|.+.++..++..+.. ...++..++.+.+++..++++.+......
T Consensus 157 g~~l~g~l~-----~~----------~g~~~~f~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (475)
T TIGR00924 157 SPLLAGVIA-----EN----------YGYHVGFNLAAVGMVIGLLTF-FAGRHMLRDIGSVPDPLSGQGKTYGKLLLALL 220 (475)
T ss_pred HHHHHHHHH-----Hh----------cChHHHHHHHHHHHHHHHHHH-HHcccccccCCCCCCCcchhhhhhHHHHHHHH
Confidence 999987631 11 178999988775554443333 22232211111000000000000000000
Q ss_pred --------------hh-H----------------HHHHHH-----HhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 011056 259 --------------EA-F----------------LWELFG-----TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMG 302 (494)
Q Consensus 259 --------------~~-~----------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (494)
+. . .++..+ .-++..+.+..+++...+.+..+.-..+..+.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~ 300 (475)
T TIGR00924 221 AALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFAD 300 (475)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 00 0 000000 00010012222333333344333333333344443
Q ss_pred hhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH----HHhh-hcchHHH--HHHHHHHHHHHHHHHHHHHhh
Q 011056 303 REIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK----LCRK-WGAGFIW--GISNILMALCFLAMLILYYVA 375 (494)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~----l~dr-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~ 375 (494)
++. +.+. .+++ +..+ +...++++..++..++..+ +.|| .+++... .+|.++.++++..+.+.....
T Consensus 301 ~~~-~~~~---~~~~--ip~~-~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~ 373 (475)
T TIGR00924 301 NNM-HHEM---LGMS--VPVI-WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFA 373 (475)
T ss_pred Hhc-cccc---cceE--ECHH-HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 221 1111 0111 1122 2234455555666555444 4443 2223333 678888888887776542111
Q ss_pred hhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 011056 376 IHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 455 (494)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~ 455 (494)
++ +...+.+..+...++.+++.....+..++++.+..|+ +.||+++|++.....+|..+++.+.....+.
T Consensus 374 ~~--------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~--~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 374 DA--------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ--RLMGQMLGMWFLAQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred CC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 1122677788899999999999999999999999999 9999999999999999999998888876655
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 456 FGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 456 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.+ +...+...++.+++..++.++..|
T Consensus 444 ~~--~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 444 QG--VTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred cc--hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 43 444555666666665555554444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=188.75 Aligned_cols=367 Identities=14% Similarity=0.099 Sum_probs=254.4
Q ss_pred hHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCC
Q 011056 53 LLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (494)
Q Consensus 53 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (494)
+.+.+.++++.+.++++|+.++......+..|+.+.+.| |+|.|++.+. +.++..+++++..+++++++++.
T Consensus 68 ~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~----rfg~R~v~i~-G~~v~~~g~~lssF~~~i~~l~l--- 139 (509)
T KOG2504|consen 68 LFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCN----RFGCRTVMIA-GGLVAALGLLLSSFATSLWQLYL--- 139 (509)
T ss_pred hHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHh----hcCchHHHHH-HHHHHHHHHHHHHHHhhHHHHHH---
Confidence 567788999999999999999999999999999999999 9999887766 77788889999999999843321
Q ss_pred CCcchHHHHHHHHHHhhccccccccc--cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccch
Q 011056 133 DFRPRAIAVFVFGFWILDVANNMTQG--KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANL 210 (494)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 210 (494)
..-++.+++.++.........+ -+++|+. +.|+...+.++|..+-+.+...+ +.. .+|
T Consensus 140 ----t~gvi~G~G~~~~~~paiviv~~YF~kkR~l-A~Gia~~GsG~G~~~~~~l~~~l-----~~~----------~G~ 199 (509)
T KOG2504|consen 140 ----TFGVIGGLGLGLIYLPAVVILGTYFEKKRAL-ATGIAVSGTGVGTVVFPPLLKYL-----LSK----------YGW 199 (509)
T ss_pred ----HHHHHhhccchhhhcchhhhhhhHhHHHHHH-HHhhhhccCCcceeeHHHHHHHH-----HHH----------hCc
Confidence 1112333333333222222222 6677775 99998888888888777664431 211 279
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCCCCC-----------------------CCCCCCcc------ccc--c-chhhh
Q 011056 211 KSAFFLDVIFIAITTCISASAAHEVPLGSHD-----------------------QSAPFSEE------GHE--Q-SSDVH 258 (494)
Q Consensus 211 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~-----------------------~~~~~~~~------~~~--~-~~~~~ 258 (494)
|+.+++.+.+.+-.........|..++..+. ..+..... +++ + +++..
T Consensus 200 r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (509)
T KOG2504|consen 200 RGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWR 279 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccc
Confidence 9998888777765555555555522221100 00000000 000 0 00000
Q ss_pred -hhHHHH----HHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHH
Q 011056 259 -EAFLWE----LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 333 (494)
Q Consensus 259 -~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (494)
....+. .++.+++ +.++.+.+...+..+++.....|++.+.....+ +.. .....+.+.++.
T Consensus 280 ~~~~~~~~~~~d~~ll~~--~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~----------~~~--~aa~l~Siigi~ 345 (509)
T KOG2504|consen 280 NSPLQAFLSMLDLSLLKD--PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGL----------SSN--DAAFLLSIIGVS 345 (509)
T ss_pred ccchhhhhhhhhHHHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----------Chh--hhHHHHHHHHHh
Confidence 011111 1466777 888888888889889988888888888863221 111 122445556888
Q ss_pred HHHHHHHHHHHHhhhcchH--HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhc
Q 011056 334 LGITSVLMEKLCRKWGAGF--IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 411 (494)
Q Consensus 334 ~~i~~~~~g~l~dr~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 411 (494)
.+++.++.|++.|+...++ +..++.+..+++.....+.+ +.+.++...+++|+..+.....
T Consensus 346 ~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~-----------------~~~~l~~~~~~fG~~~g~~~~l 408 (509)
T KOG2504|consen 346 DIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT-----------------TYVGLIVFSILFGFCVGSFSSL 408 (509)
T ss_pred hhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988444 34566666666665555553 5678888899999999999888
Q ss_pred hhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 412 PYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 412 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
...++.|.++. ++...++|+...+..++..+||.+.|.+.|..| +|...|...+++.++++.+.+..
T Consensus 409 ~~~i~~~~~g~--~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg-~Y~~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 409 TPVILVDLVGL--EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG-NYDHAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred HHHHHHHHcCh--hhcchHHHHHHHHhHHHHHcCcccceeeeeccC-CeeeehhhcChHHHHHHHHHHHh
Confidence 88899999999 899999999999999999999999999999987 47777888888888877655443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=181.77 Aligned_cols=404 Identities=13% Similarity=0.071 Sum_probs=224.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCC-CCCcchhHHHH
Q 011056 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVCG 107 (494)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r-~Grr~~~l~~~ 107 (494)
++.++.+....+.-.++|.....+++.|. +++|.+.++.+++.+.+.....+..+++|+++| | +||||.++. +
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laD----r~~G~r~~~~~-g 87 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGD----HLLGTKRTIVL-G 87 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhh----hccchHHHHHH-H
Confidence 34455555555555566666656666665 779999999999999999999999999999999 9 999998777 6
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---ccc--chhhHHhHHHHHHHHHHHHHH
Q 011056 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDH--RRTRVANAYFSLFMAVGNILG 182 (494)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~r~~~~~~~~~~~~~~g~~~g 182 (494)
.+...++.+.++++++... .....+.+.+++.+........... +++ +|.+ ++++.+...++|..+|
T Consensus 88 ~~~~~~g~~~~~~~~~~~~-------ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~-~~~~~~~~~nig~~~g 159 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPD-------LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDG-AFTLFYMSINIGSLIS 159 (489)
T ss_pred HHHHHHHHHHHHHhccchh-------HHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhc-chhHHHHHHHHHHHHH
Confidence 6666667777767654310 0001222222333322222222222 333 3344 8899999999999999
Q ss_pred hhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccccc---------
Q 011056 183 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ--------- 253 (494)
Q Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~--------- 253 (494)
+.+++++. .+ .+||+.|++.++..++. ++.+...++..++.+.+.+..+.+....
T Consensus 160 ~~l~g~l~-----~~----------~gw~~~F~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~ 223 (489)
T PRK10207 160 LSLAPVIA-----DK----------FGYSVTYNLCGAGLIIA-LLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVV 223 (489)
T ss_pred HHHHHHHH-----Hh----------hChHHHHHHHHHHHHHH-HHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHH
Confidence 99987631 11 17999998875533333 3333333332211110000000000000
Q ss_pred --------chhhhhhH--------------HHHHH---HHhhhchHHHHHHHH--HHHHHHHHHHHHHhhchhhhhhhhc
Q 011056 254 --------SSDVHEAF--------------LWELF---GTFRYFSGTIWIILI--VTALTWLGWFPFLLFDTDWMGREIY 306 (494)
Q Consensus 254 --------~~~~~~~~--------------~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (494)
.+...... ..+.. +..|+ |.+....+ ...+.+..+.......+.+..+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~--r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~ 301 (489)
T PRK10207 224 MIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRN--KMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVH 301 (489)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcc
Confidence 00000000 00000 11111 22222111 1222333333332333444432221
Q ss_pred CCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH-------HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 011056 307 GGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI-------WGISNILMALCFLAMLILYYVAIHMD 379 (494)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (494)
+ + ..++. .... ....++.+..++.+++.+++.||.++|+. +.+|.++.+++++.+........+.
T Consensus 302 ~-~---~~G~~--i~~~-~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~- 373 (489)
T PRK10207 302 H-E---ILGFS--INPV-SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADA- 373 (489)
T ss_pred c-c---ccceE--ECHH-HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCC-
Confidence 1 0 00111 1111 22233455566788888999999998863 6677777777766543221000000
Q ss_pred ccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc---
Q 011056 380 YRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF--- 456 (494)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~--- 456 (494)
....+.+..+...++.|++.+...+...+.+.+..|+ +.+|.++|++++...+|+.++..++......-
T Consensus 374 ------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~--~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~ 445 (489)
T PRK10207 374 ------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ--HLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNIT 445 (489)
T ss_pred ------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 1112456677788899999999999999999999999 99999999999999999999988876542100
Q ss_pred C-----CCCcchHHHHHHHHHHHHHHHhh
Q 011056 457 G-----GGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 457 g-----~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
+ ..+...|...++..+++.++.+.
T Consensus 446 ~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 446 DPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01233455555555555554444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=204.21 Aligned_cols=348 Identities=13% Similarity=0.025 Sum_probs=208.4
Q ss_pred hhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHH--HHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHH
Q 011056 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV--CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFV 143 (494)
Q Consensus 66 ~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (494)
...++..+++.+...+++|++|+++| |+||||.+.. ...+......+.....++++. ......+.+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laD----r~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~--------l~~~~~l~g 119 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLAD----KYDKAKLAKILKFAEIGIAALAIYGFHLNSVPL--------LFAALFLMG 119 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhh----hccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHH
Confidence 45788888999999999999999999 9999986432 222222222222223355521 112222222
Q ss_pred HHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHH
Q 011056 144 FGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIF 220 (494)
Q Consensus 144 ~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 220 (494)
++............. +++++.+ ++++.++..++|.++|+.+++++ ..+ .+|++.|...++.
T Consensus 120 i~~a~~~p~~~a~l~~~~~~~~~~~-a~~~~~~~~~ig~~igp~l~g~l-----~~~----------~~~~~~~~~~~~~ 183 (1140)
T PRK06814 120 IHSALFGPIKYSILPDHLNKDELLG-ANALVEAGTFIAILLGTIIGGLA-----TIS----------GNFVILVALLMGI 183 (1140)
T ss_pred HHHHhhchHHHHhhHhhcCccccch-hhHHHHHHHHHHHHHHHHHHHHH-----Hhc----------cccHHHHHHHHHH
Confidence 222222222222222 6777777 99999999999999999999873 111 1688888444333
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 011056 221 IAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 300 (494)
Q Consensus 221 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (494)
. +..++..+.+|++++....... +. ...+.....+....++ +.++...+..++.++....+..+.+.|
T Consensus 184 ~-~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~ 251 (1140)
T PRK06814 184 A-VLGWLASLFIPKTGNAAPDLKI------DR---NIIRSTITLLKYAKAD--KRIWLAILGISWFWLVGAVVLSQLPLL 251 (1140)
T ss_pred H-HHHHHHHhhCCCCCCCCCCCee------cc---chHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3 3334444556665432211100 00 0011112223344445 777777777777666666677778888
Q ss_pred hhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 011056 301 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDY 380 (494)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (494)
+.+ .++.++. ...+.....+++.++++++.+++.||.++++.+..+.++.+++.+.+.+... +...
T Consensus 252 ~~~-~~g~~~~----------~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~ 317 (1140)
T PRK06814 252 AKE-TLGGDEN----------VATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASS---SVPA 317 (1140)
T ss_pred HHH-HcCCchH----------HHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccc---cccc
Confidence 853 3332221 1223345567888999999999998887766655555555444443332100 0000
Q ss_pred cCC-C-----CCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011056 381 RGH-D-----LPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 454 (494)
Q Consensus 381 ~~~-~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~ 454 (494)
... . +....+.+.+.+..+++|++.+...+...+++++.+|+ +.+|+++|+.++...++..+++.+.|.+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 318 EPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP--AHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred ccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc--ccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00001345566777788888888888889999999999 999999999999999999999999999875
Q ss_pred hcCCCCcchHHHHHHH
Q 011056 455 LFGGGNSPAFAVGGIS 470 (494)
Q Consensus 455 ~~g~~~~~~~~~~~~~ 470 (494)
... ++...+.+.+++
T Consensus 396 ~~~-~~~~~~~~~~~~ 410 (1140)
T PRK06814 396 LGF-SIPWIILFIALA 410 (1140)
T ss_pred hcc-CHHHHHHHHHHH
Confidence 432 233344444433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=167.65 Aligned_cols=376 Identities=14% Similarity=0.099 Sum_probs=247.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHH
Q 011056 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (494)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~ 111 (494)
........++...+........+|.+.+.++++..+.+++..++..++.+..++.|++.+ |+|+|+.+++ +..+.
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~k----k~gyk~gi~l-gL~l~ 88 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIK----KLGYKAGIVL-GLLLY 88 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHH----HhhhHHHHHH-HHHHH
Confidence 344445555555556666667889999999999999999999999999999999999999 9999998776 77777
Q ss_pred HHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhccc
Q 011056 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSF 188 (494)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~ 188 (494)
++++.+++-+.+.... ......+.+.+.|.++++.+.|.... ++++..+ .+...+.++++|.++||.+++.
T Consensus 89 avg~~lF~pAa~~~~y-----~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~-rlnl~q~fn~lGa~~gp~~g~~ 162 (422)
T COG0738 89 AVGAALFWPAASSKSY-----GFFLVALFILASGIGLLETAANPYVTLLGKPESAAF-RLNLAQAFNGLGAILGPLLGSS 162 (422)
T ss_pred HHHHHHHhhhhhhhhH-----HHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHH-HHHHHHHhhhhHHHHHHHHHHH
Confidence 7777777533322000 11123334555666667888887777 4444444 8889999999999999999987
Q ss_pred ccccccchhhhcc-------cccccccchhHHHHHHHHHHHHHHHHHhh-cccCCCCCCCCCCCCCCccccccchhhhhh
Q 011056 189 SGWFKILPFTLTS-------ACNVDCANLKSAFFLDVIFIAITTCISAS-AAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 260 (494)
Q Consensus 189 ~~~~~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (494)
+-+.. +.... ........+++.|...+...+++.+.... ..||.++..+++. + .+.
T Consensus 163 lils~---~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~--------~-----~~~ 226 (422)
T COG0738 163 LILSG---VALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLG--------A-----SGS 226 (422)
T ss_pred HHHhh---hhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccc--------c-----ccc
Confidence 43211 11000 00001125778888777666555444322 2233322221110 0 000
Q ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHH
Q 011056 261 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 340 (494)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 340 (494)
. ...+.+++ |+++...+..++....-.....|++.|+.+. -+.+. ..+......+-.+.++|+++
T Consensus 227 ~--~~~~l~~~--~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-~g~~~----------~~aa~~~s~~~~~~~vGRFi 291 (422)
T COG0738 227 A--GLSSLFQN--KHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-LGLNE----------QQAAYYLSFFWVGFMVGRFI 291 (422)
T ss_pred c--hHHHHHhC--hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-CCccH----------HHHHHHHHHHHHHHHHHHHH
Confidence 0 23445566 8888888888877777777778888888643 11111 12334455556667899999
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhc
Q 011056 341 MEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 420 (494)
Q Consensus 341 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 420 (494)
+.++.+|+...|.+.+..++..+.++...+.+ + ...+....+.|+..+..+|..+++..+..
T Consensus 292 g~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~-----------------g-~v~~~~l~~ig~F~simfPTIfslal~~l 353 (422)
T COG0738 292 GSALMSRIKPEKYLAFYALIAILLLLAVALIG-----------------G-VVALYALFLIGLFNSIMFPTIFSLALKNL 353 (422)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc-----------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 99999999999999887777666666666652 2 44556677888999999999999999998
Q ss_pred ccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHH
Q 011056 421 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALA 473 (494)
Q Consensus 421 ~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i 473 (494)
|++ ..... ..-....+|+++.|.+.|++.|+.| ....+......|.+
T Consensus 354 ~~~---ts~~s-~~l~maivGGAiiP~l~G~i~d~~g--~~~~~~~~pllc~l 400 (422)
T COG0738 354 GEH---TSVGS-GLLVMAIVGGAIIPPLQGVIADMFG--IQLTFLIVPLLCYL 400 (422)
T ss_pred Ccc---ccccc-eeeeeheecchHHHHHHHHHHHhhh--hHHHHHHHHHHHHH
Confidence 852 22222 2334556788999999999999987 44444433333333
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-20 Score=182.85 Aligned_cols=371 Identities=15% Similarity=0.133 Sum_probs=231.2
Q ss_pred hhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHH
Q 011056 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFG 145 (494)
Q Consensus 66 ~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (494)
.+.+++.++..++..+++++.|+++| ++|||+.+++ +.++..++.++.++++|+.++ ...+++.+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d----~~GRk~~l~~-~~~~~~iG~ii~~~a~~~~~l--------~~GR~l~G~g 155 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGD----RIGRKKTLLL-AVVLFLIGAIIIALAPSWYQL--------IVGRILTGLG 155 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHH-HHHHHHHHHHHHHHhhhHHHH--------HHHHHHhccc
Confidence 34589999999999999999999999 9999887766 777888888888899998332 3444555555
Q ss_pred HHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHH
Q 011056 146 FWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIA 222 (494)
Q Consensus 146 ~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 222 (494)
.+..........+ +++.|+. ..+..+....+|..++..++...... ..+||..+.+..+..+
T Consensus 156 ~G~~~~~~piy~sEiap~~~RG~-l~~~~~l~~~~Gi~~~~~~~~~~~~~--------------~~~Wr~~~~~~~i~~~ 220 (513)
T KOG0254|consen 156 VGGASVLAPVYISEIAPAHIRGT-LVSLYQLFITIGILLGYCINYGTSKV--------------YAGWRIPLGLALIPAV 220 (513)
T ss_pred hhhhhhcchhhHhhcCChhhhHH-HHHHHHHHHHHHHHHHHHHhhhhccC--------------CccHHHHHHHHHHHHH
Confidence 5554433333333 6667876 88888888889999987766542100 0279988888877777
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCc------------cccccchhhhh------------h-HHHHHHHHhhhchHHHH
Q 011056 223 ITTCISASAAHEVPLGSHDQSAPFSE------------EGHEQSSDVHE------------A-FLWELFGTFRYFSGTIW 277 (494)
Q Consensus 223 ~~~~~~~~~~~e~~~~~~~~~~~~~~------------~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~ 277 (494)
+..+. .++.||+|++..++++.++. ++.+.+.+..+ . .++++.+ +..+++..
T Consensus 221 ~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 297 (513)
T KOG0254|consen 221 ILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS--PKVRKRLI 297 (513)
T ss_pred HHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC--cchHHHHH
Confidence 77666 78899999865443222110 00000000000 0 0111111 11223333
Q ss_pred HHHHHHHHHH-HHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 011056 278 IILIVTALTW-LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI 356 (494)
Q Consensus 278 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~ 356 (494)
..+....+++ .+......|.+..+....+ +... .....+.++..+++..+...+.||+|||++++.
T Consensus 298 i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~----------~~~~---~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~ 364 (513)
T KOG0254|consen 298 IGLLLQLFQQLTGINYVFYYSTTIFKSAGL----------KSDT---FLASIILGVVNFLGTLVATYLVDRFGRRKLLLF 364 (513)
T ss_pred HHHHHHHHHHHhCCceEEeehHHHHHhcCC----------CCch---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3334444444 4444444455555432211 1110 233444566677888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHh-hhhhhchhhhHhhhcccCCCCcchhhhHHH
Q 011056 357 SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL-AITYSVPYALVSIRTESLGLGQGLSLGVLN 435 (494)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 435 (494)
+...+.++++++......+.+... ......+..++...++-..+ ....++++.+.+|.+|. +.|+++.++..
T Consensus 365 s~~~m~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~--~~r~~~~s~~~ 437 (513)
T KOG0254|consen 365 GAAGMSICLVILAVVGVFALYYPN-----SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL--RLRSKGASLAV 437 (513)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCC-----cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH--hHHhhhHHHHH
Confidence 999999999988776433222100 00012233333333333333 33347888899999999 99999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHH-HHhhcccCCCCCC
Q 011056 436 LAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGL-IAILAIPRSSAQK 489 (494)
Q Consensus 436 ~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~ 489 (494)
..+.+...+-....-.+.+..+ ....|...+..+.+... ..+++.||+|.+.
T Consensus 438 ~~n~~~~~~v~~~~~~~~~~~~--~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s 490 (513)
T KOG0254|consen 438 AVNWLWNFLISFFFPFITEALG--IGGTFGYFGGICLLSLIIFVFFFVPETKGLT 490 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence 8888888777666555555433 24456565666666655 6777889988754
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-20 Score=163.04 Aligned_cols=354 Identities=16% Similarity=0.138 Sum_probs=202.7
Q ss_pred CCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHH
Q 011056 62 GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAV 141 (494)
Q Consensus 62 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (494)
+.+..-.|.+.+.+++..++.+|.+|.++| |+|||. .++.+.+..+++..+.+.+.|+ ...+.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD----~yGRkp-vll~c~~~va~s~ll~~~S~~F------------~afv~ 126 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSD----RYGRKP-VLLACLIGVALSYLLWALSRNF------------AAFVL 126 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhh----hhCchH-HHHHHHHHHHHHHHHHHHHHHH------------HHHHH
Confidence 345567799999999999999999999999 999965 5555888888899999888887 33344
Q ss_pred HHHHHHhhccccccccc------cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccchhHHH-
Q 011056 142 FVFGFWILDVANNMTQG------KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAF- 214 (494)
Q Consensus 142 ~~~~~~~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f- 214 (494)
.+...++.....+...+ +|++|.. .++.++..+++|.++||.+|+++.. |+ ... ..+...+
T Consensus 127 aR~l~Gi~kgnl~v~rAiisdV~sek~r~l-~ms~v~~a~~lGfilGPmIGgyla~---f~---~~~-----g~~p~alP 194 (451)
T KOG2615|consen 127 ARFLGGIFKGNLSVIRAIISDVVSEKYRPL-GMSLVGTAFGLGFILGPMIGGYLAQ---FS---SIS-----GSYPFALP 194 (451)
T ss_pred HHHhhhhccCchHHHHHHHHhhcChhhccc-eeeeeehhhhcchhhcchhhhHHHh---hH---hhh-----ccCchHHH
Confidence 45666665443333333 7788887 9999999999999999999998532 11 000 0111121
Q ss_pred -HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchh-hhhhHHHHHHHHhhhchH----HHHHHHHHHHHHHH
Q 011056 215 -FLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD-VHEAFLWELFGTFRYFSG----TIWIILIVTALTWL 288 (494)
Q Consensus 215 -~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 288 (494)
++..+..........+++||+-+.++++.++.+..+..+.++ ..+....+-...++|.|. ..+..+...-+.+.
T Consensus 195 ~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~ 274 (451)
T KOG2615|consen 195 CLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYL 274 (451)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence 112222222233445678888544433311111111111111 111111222333444321 11222222222223
Q ss_pred HHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHH
Q 011056 289 GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG--AGFIWGISNILMALCFL 366 (494)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~ 366 (494)
..+....+...++....++.++.+. |.+ +...++.+.+.+....+..||.. .+-.+..+..++.-.++
T Consensus 275 ~l~s~~~~t~~~l~~~rfg~ss~~~---------G~v-l~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~l 344 (451)
T KOG2615|consen 275 ELFSGLENTVLFLTHGRFGYSSMQQ---------GKV-LSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFL 344 (451)
T ss_pred HHHHHHHhhHHHhhcCccCCChhhh---------eee-eehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHH
Confidence 3333333444444333455444331 111 22233334444444444455543 22233334443333333
Q ss_pred HHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHh
Q 011056 367 AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVS 446 (494)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~ 446 (494)
++... + ....+.....+..+......+....++....|+ +++|+.+|+......++.++||
T Consensus 345 lls~~--------------~---~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~--~qrG~~~Gi~~Sl~alaRaiGP 405 (451)
T KOG2615|consen 345 LLSLA--------------R---TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQ--SQRGTLNGIFRSLGALARAIGP 405 (451)
T ss_pred HHhcc--------------c---cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCc--ccchHHHHHHHHHHHHHHHhhh
Confidence 33332 1 345566677778888887788888888999998 9999999999999999999999
Q ss_pred hhhhhhhhhcCCCCcchHHHHHHHHHHH
Q 011056 447 MGSGPWDQLFGGGNSPAFAVGGISALAG 474 (494)
Q Consensus 447 ~~~g~l~~~~g~~~~~~~~~~~~~~~i~ 474 (494)
+++|.+..+... .+..+...+.+.++.
T Consensus 406 lv~g~i~~Ws~~-~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 406 LVSGVIFSWSQG-AQPAYIAWGALLLIP 432 (451)
T ss_pred hhhheeEEEecC-CCceeeehHHHHHHH
Confidence 999999887642 344443333333443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.6e-20 Score=160.66 Aligned_cols=387 Identities=15% Similarity=0.115 Sum_probs=222.8
Q ss_pred HHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccc
Q 011056 45 FGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (494)
Q Consensus 45 ~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~ 123 (494)
..+......+.+.. ...|.+..+..++......+..+++..+|..+| ++||||.+.+ ..+...+.-.+.+.++|
T Consensus 91 ~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d----~~grr~~f~~-T~l~t~v~~~is~~spn 165 (528)
T KOG0253|consen 91 AMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSAD----TIGRRKGFNL-TFLVTGVFGVISGASPN 165 (528)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehh----hhhcchhhhh-hHHHHHHHHHhhcCCCC
Confidence 34444444444444 558889999999999999999999999999999 9999998877 44444445555668888
Q ss_pred cccccCCCCCCcchHHHHHHHHHHhhccccccccc--cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcc
Q 011056 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG--KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 201 (494)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~ 201 (494)
+..+ +....+.+.+++........... +...|.. .. .....+.+|.+....+... .+++.
T Consensus 166 f~~L--------~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~-~~-V~~~~waig~v~ea~law~-----vm~~~--- 227 (528)
T KOG0253|consen 166 FASL--------CVFRALWGFGVGGLPVDSAIYLEFLPSSHRWL-LT-VMSFFWAIGQVFEALLAWG-----VMSNF--- 227 (528)
T ss_pred eehh--------hHHHHHHhccCCCccHhHHHHHHhccCcCCCc-ch-hHHHHHHHHHHHHHHHHHH-----HHHhh---
Confidence 8221 11111222222111111000000 4444543 22 3337788888887776543 12322
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC---------------------------ccccccc
Q 011056 202 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS---------------------------EEGHEQS 254 (494)
Q Consensus 202 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---------------------------~~~~~~~ 254 (494)
+|||.....+... ......+++++|+|+....++++.+ ++++++.
T Consensus 228 -------gwr~~l~~~~~pl-~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~ 299 (528)
T KOG0253|consen 228 -------GWRYLLFTSSTPL-MFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEES 299 (528)
T ss_pred -------hHHHHHHHHHhHH-HHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhh
Confidence 7898888777433 3444556789999974322211100 0000000
Q ss_pred --h-------hhhhhHHHHHHH-HhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhh-hhcCC----CCCCCcc---c
Q 011056 255 --S-------DVHEAFLWELFG-TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGR-EIYGG----EPNEGQN---Y 316 (494)
Q Consensus 255 --~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~---~ 316 (494)
+ ++......+++. .++ |....+....+.+.+++++.....+...+. +..+. .+.+... -
T Consensus 300 ~~~~~~~~a~ke~rg~~~nLlsp~lr---kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c 376 (528)
T KOG0253|consen 300 DLDDSKSSAAKEVRGGTTNLLSPKLR---KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANC 376 (528)
T ss_pred chhhhhhccccccccchHhhcChHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcC
Confidence 0 001111112111 111 221122222222233333333322222210 00000 0000000 0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHH
Q 011056 317 ATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALI 396 (494)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (494)
......--.-+.+..+..++|.++.++++||+|||+.+..+.++.+++.+++.... +.....+
T Consensus 377 ~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-----------------~rn~~tv 439 (528)
T KOG0253|consen 377 PLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-----------------TRNAYTV 439 (528)
T ss_pred CccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-----------------CcchhHH
Confidence 00000111224456778999999999999999999999999999888877766653 1222334
Q ss_pred HHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHH
Q 011056 397 IFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGL 476 (494)
Q Consensus 397 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~ 476 (494)
+.+..-++..+.+.+.|.+..|++|. ..|++..|..+....+|+++.|+++ ...+. +.+....+.+.+++++++
T Consensus 440 llf~arafisg~fqvaYvYtPEVyPT--avRatgvGtcSsmaRIggI~~p~iA-~~~e~---s~sl~i~vy~~~~ilagI 513 (528)
T KOG0253|consen 440 LLFTARAFISGAFQVAYVYTPEVYPT--AVRATGVGTCSSMARIGGIFSPVIA-MRAEL---STSLPIFVYGALFILAGI 513 (528)
T ss_pred HHHHHHHHHhchheEEEEecCcccch--hhhhcchhhhhhHHhhhhhhhhHHH-HHhcc---ceeehHHHHHHHHHHHHH
Confidence 44455566666777889999999999 9999999999999999999999998 33332 345667778888888888
Q ss_pred HHhhcccCCCCC
Q 011056 477 IAILAIPRSSAQ 488 (494)
Q Consensus 477 ~~~~~~~~~~~~ 488 (494)
...++--|+|.+
T Consensus 514 avcffPiEtkGR 525 (528)
T KOG0253|consen 514 AVCFFPIETKGR 525 (528)
T ss_pred HheeeeeccCCC
Confidence 888776676654
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=178.27 Aligned_cols=361 Identities=16% Similarity=0.116 Sum_probs=238.5
Q ss_pred HhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHH
Q 011056 60 ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAI 139 (494)
Q Consensus 60 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (494)
+++.+..+.+++.+.+..++.+++.+.|++.| |+|-||++.. +.++.+++.++...+.+.+. ......+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~----k~G~r~v~~~-~~~~sa~~t~l~P~aa~~~~------~~~~~~R 135 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLAD----KFGARRVFFI-SGLISALLTLLTPLAASIGF------YLLLVLR 135 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHH----HcCchHHHHH-HHHHHHHHHHHHHHHHHhcc------hhhHHHH
Confidence 47788999999999999999999999999999 9999997776 66677778888877766521 0111223
Q ss_pred HHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccchhHHHHH
Q 011056 140 AVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFL 216 (494)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 216 (494)
++.+++.+....+...... |++||.+ ..++...+..+|.+++..++|++.-. ..+|++.|++
T Consensus 136 ~lqGl~~g~~~pa~~~i~~~W~P~~Ers~-~~ail~~g~q~g~v~~mp~sg~lc~s--------------~~GW~sifY~ 200 (466)
T KOG2532|consen 136 FLQGLGQGVLFPAIGSILAKWAPPNERST-FIAILTAGSQLGTIITMPVSGLLCES--------------SLGWPSIFYV 200 (466)
T ss_pred HHhHHHHhHHHhhhhceeeeECCHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHhcc--------------CCCCchHHHH
Confidence 3334344433333333333 8888987 99999999999999999888763211 1289999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCCCCC----cccccc-chhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 011056 217 DVIFIAITTCISASAAHEVPLGSHDQSAPFS----EEGHEQ-SSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWF 291 (494)
Q Consensus 217 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (494)
.+++.++..++.+.+..|+|.+.+.-.+++. +++.++ .++..+.++++ .+++ +.+|...+..+....+++
T Consensus 201 ~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~---i~ts--~~vwai~~~~f~~~~~~~ 275 (466)
T KOG2532|consen 201 FGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKA---ILTS--PPVWAIWISAFGGNWGFY 275 (466)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHH---HHcC--HHHHHHHHHHHHHHHHHH
Confidence 9999999988888888888765332111110 000000 00012334444 4455 899999999999999999
Q ss_pred HHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--------hHHH-HHHHHHHH
Q 011056 292 PFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA--------GFIW-GISNILMA 362 (494)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~--------~~~~-~~~~~~~~ 362 (494)
.+..|.|.|+. ++++.+..+ .| +...+-.+...+..++.|.++||..+ ||.+ .++....+
T Consensus 276 ~l~~y~PtY~~-~VL~f~v~~---------~G-~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~a 344 (466)
T KOG2532|consen 276 LLLTYLPTYLK-EVLGFDVRE---------TG-FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPA 344 (466)
T ss_pred HHHHHhhHHHH-HHhCCChhh---------hh-HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHH
Confidence 99999999996 444444332 12 33334456678888999999998854 2333 45666666
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhh-hchhhhHhhhcccCCCCcchhhhHHHHHHHHH
Q 011056 363 LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY-SVPYALVSIRTESLGLGQGLSLGVLNLAIVIP 441 (494)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 441 (494)
++++.+.+.. .++ . +..+++ ...+.+..... +..+.-..+..| ++.+..+|+.|....+.
T Consensus 345 i~l~~l~~~~-------------~~~-~-~~a~~~-l~~~~~~~g~~~~Gf~~~~~~~ap---q~a~~l~g~~~~~~~~~ 405 (466)
T KOG2532|consen 345 VFLLVLAFTS-------------DEH-R-LLAVIL-LTIAIGLSGFNISGFYKNHQDIAP---QHAGFVMGIINFVGALA 405 (466)
T ss_pred HHHHeeeecC-------------CCc-c-hHHHHH-HHHHHHHcccchhhhHhhhhhccc---hHHHHHHHHHHHHHHHH
Confidence 6666666652 111 1 111111 12222222222 112222223344 78999999999999999
Q ss_pred HHHHhhhhhhhhh-hcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 442 QIVVSMGSGPWDQ-LFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 442 ~~l~~~~~g~l~~-~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
++++|.+.|.+.. ..-..+...|++.+++.+++.++..++
T Consensus 406 ~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 406 GFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 9999999999984 211135567888888888887665554
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=166.34 Aligned_cols=343 Identities=13% Similarity=0.149 Sum_probs=225.5
Q ss_pred HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcchH
Q 011056 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRA 138 (494)
Q Consensus 59 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (494)
++.+-+++++|++.+...+.+.+.+|+.|.+.| |+|+|-++++ |...+..+.+++++.+++. .....
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~----~iGy~ipm~~-Gl~vmf~sTilFafg~sy~--------~l~vA 165 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLID----RIGYKIPMVA-GLFVMFLSTILFAFGNSYP--------MLFVA 165 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHH----HhccccHHHH-HHHHHHHHHHHHHHcchhH--------HHHHH
Confidence 346677899999999999999999999999999 9999887766 7888888999999999883 22344
Q ss_pred HHHHHHHHHhhccccccccc----cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccchhHHH
Q 011056 139 IAVFVFGFWILDVANNMTQG----KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAF 214 (494)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f 214 (494)
+.+.+++......+.-...+ +|++|++ ++|+.-.+.++|..+||..||++ +.+. +.+..|
T Consensus 166 R~LQgvgsA~~~tsglamlAd~f~~d~er~~-vmGialgfislG~lvgPpfGGil-----Ye~~----------Gk~aPF 229 (464)
T KOG3764|consen 166 RSLQGVGSAFADTSGLAMLADVFPEDNERGS-VMGIALGFISLGVLVGPPFGGIL-----YEFA----------GKSAPF 229 (464)
T ss_pred HHHhhhhHHHHHhhhHHHHHHHcccchhhhH-HHHHHHHHHhccceecCCcccch-----Hhhc----------CCcCcH
Confidence 45555555554444333333 5666777 99999999999999999999984 2222 678899
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 011056 215 FLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFL 294 (494)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (494)
.+.++++++...+.++.++.++.+++.. ++.. .+++.+++ +..+...........+....-
T Consensus 230 lVL~~v~Lld~~L~l~vi~p~~~~~~~~--------------~~~~---~~~~Ll~d--P~I~~~agai~~~n~~lafLe 290 (464)
T KOG3764|consen 230 LVLAIVLLLDGALQLLVIEPTEMDPDST--------------EQGT---PMWSLLMD--PYILLIAGAITFSNSSLAFLE 290 (464)
T ss_pred HHHHHHHHHHHHHHHheeCccccCcccc--------------ccCc---cHHHHHhC--chHhhhhcchhhccchHHHhC
Confidence 9999999998888877776654333211 0112 23444445 555554443333333333333
Q ss_pred hhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchH--HHHHHHHHHHHHHHHHHHHH
Q 011056 295 LFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF--IWGISNILMALCFLAMLILY 372 (494)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~--~~~~~~~~~~~~~~~~~~~~ 372 (494)
.-++.++.++.. ++ .++.+ +..+...+...++..+.|.+.||+++-+ ....+.+..+.+.....+.+
T Consensus 291 Ptlslwm~e~m~--~p----~w~~G-----~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~ 359 (464)
T KOG3764|consen 291 PTLSLWMLETMF--TP----GWEVG-----LAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFAT 359 (464)
T ss_pred cccHHHHHHhcc--CC----Cccee-----eeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhh
Confidence 445566654432 11 22222 2233356678899999999999998433 23444555454444444543
Q ss_pred HhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCC-C---CcchhhhHHHHHHHHHHHHHhhh
Q 011056 373 YVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG-L---GQGLSLGVLNLAIVIPQIVVSMG 448 (494)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~---~~g~~~g~~~~~~~~g~~l~~~~ 448 (494)
+...+++.....+++.+............+++..+ + ..|..+++......+|.++||.+
T Consensus 360 -----------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~ 422 (464)
T KOG3764|consen 360 -----------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTF 422 (464)
T ss_pred -----------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccc
Confidence 34445555555555555444444444455554421 2 56899999999999999999999
Q ss_pred hhhhhhhcCCCCcchHHHHHHHHHHHHHHHh
Q 011056 449 SGPWDQLFGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 449 ~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
+|.+.+..| +.+.-.+.++..++-+-+..
T Consensus 423 gg~iv~~iG--F~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 423 GGSLVEAIG--FEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred cchheeehh--HHHHHHHHHHHHHHHHHHHH
Confidence 999999988 66655555555555444433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=169.43 Aligned_cols=375 Identities=14% Similarity=0.097 Sum_probs=200.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCC-CCCcchhHHHHHHH
Q 011056 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVCGAIS 110 (494)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r-~Grr~~~l~~~~~~ 110 (494)
++......+...+.+.....+++.|. +++|+|.++.+++.+.+........+++|+++| | +|||+.++. +.+.
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaD----r~~G~r~~~~~-g~~~ 97 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGD----KVLGTKRVIML-GAIV 97 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchHHHHHH-HHHH
Confidence 44444444555566655656777776 789999999999888877776677789999999 9 599887766 5556
Q ss_pred HHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---ccc-chhhHHhHHHHHHHHHHHHHHhhhc
Q 011056 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDH-RRTRVANAYFSLFMAVGNILGYATG 186 (494)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~r~~~~~~~~~~~~~~g~~~g~~~g 186 (494)
..++..++.++++.. ......+.+.+++.+........... +++ +|...+.++.+.+.++|..+|+.++
T Consensus 98 ~~ig~~l~~~~~~~~-------~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~ 170 (500)
T PRK09584 98 LAIGYALVAWSGHDA-------GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLAT 170 (500)
T ss_pred HHHHHHHHHHhcccH-------HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 666666666653320 00011112223333322222222222 322 2222378888999999999999998
Q ss_pred ccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHH---hhcccCCCCCCCCCCCCCCccc-------------
Q 011056 187 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS---ASAAHEVPLGSHDQSAPFSEEG------------- 250 (494)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~~------------- 250 (494)
+++ ... .+||+.|.+.++..++..+.. ...++|.+++++.+ +.+....
T Consensus 171 g~l-----~~~----------~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 234 (500)
T PRK09584 171 PWL-----AAK----------YGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFE-PINYRKLLLTIVGVVALIAI 234 (500)
T ss_pred HHH-----HHh----------hCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCcc-ccchhhHHHHHHHHHHHHHH
Confidence 763 111 179999998775444433322 22333332111110 0000000
Q ss_pred ----cccchhhhh-----------hHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh-hcCCCCCCCc
Q 011056 251 ----HEQSSDVHE-----------AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGRE-IYGGEPNEGQ 314 (494)
Q Consensus 251 ----~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 314 (494)
....+.... ...++..+.-+..+++.+..+.. ++....+.......+..+... ..+.+... .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~-~ 312 (500)
T PRK09584 235 ATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFIL-MLEAIIFFVLYSQMPTSLNFFAIRNVEHSI-L 312 (500)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-HHHHHHHHHHHHHhccHHHHHHHHhccccc-c
Confidence 000000000 00000000000101222222221 122222222222222222210 00011000 0
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCch
Q 011056 315 NYATGVRMGALGLMLNSVVLGITSVLM----EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGI 390 (494)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~i~~~~~----g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (494)
++. ...+ ....++.+..++..++. +++.||.+..+.+.++.++.+++++.+.......++ ....+
T Consensus 313 g~~--i~~~-~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~--------~~~vs 381 (500)
T PRK09584 313 GIA--VEPE-QYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFAND--------AGIVS 381 (500)
T ss_pred ceE--ECHH-HHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCccC
Confidence 111 1111 22234454444554544 555556666677888999999999887776421111 11123
Q ss_pred HHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhh
Q 011056 391 VIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSG 450 (494)
Q Consensus 391 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g 450 (494)
.+..+...++.+++.....|...+++.+..|+ +.||..+|++.....+|..++..+.+
T Consensus 382 ~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~--~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 382 VNWLIASYGLQSIGELMISGLGLAMVAQLVPQ--RLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888899999999999999999999999 99999999888777777777666654
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=168.23 Aligned_cols=363 Identities=13% Similarity=0.053 Sum_probs=210.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHH
Q 011056 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (494)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~ 109 (494)
.+....++......-..-.......+...+.+|++++..|++.+.+.+...+..|+.|+++| |+.||+.+.+ |..
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLad----ryNR~~v~~v-G~~ 106 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLAD----RYNRKRVIAV-GIF 106 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHh----hcCcceEEee-HHH
Confidence 33344444444444334334444667777889999999999999999999999999999999 9999885554 888
Q ss_pred HHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc-------cccchhhHHhHHHHHHHHHHHHHH
Q 011056 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG-------KDHRRTRVANAYFSLFMAVGNILG 182 (494)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~r~~~~~~~~~~~~~~g~~~g 182 (494)
++.++.+..+++..+ +...+.+...++-..++....+ ++++|++ .+++++....+|..+|
T Consensus 107 iW~~Av~~~~fs~~F------------wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~-~~~ify~~ipvGsglG 173 (493)
T KOG1330|consen 107 IWTLAVFASGFSNHF------------WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSR-VLGIFYFAIPVGSGLG 173 (493)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHhccchhhhcccchhHhhhcCcchhhhH-HHHHhhhhccccccee
Confidence 899999999898776 3333343333333333333222 7888887 9999999999999999
Q ss_pred hhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHH
Q 011056 183 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 262 (494)
Q Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (494)
.+.|....- + ..+|||.|...+++.+++.++..++.+|+++...++.+.+.. ..++....+
T Consensus 174 ~vvgs~va~-----~---------~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~-----~~~~~ts~~ 234 (493)
T KOG1330|consen 174 YVVGSVVAS-----L---------TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENK-----MVKPFTSVW 234 (493)
T ss_pred EEeeeeecc-----C---------ccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCc-----CCCCccchH
Confidence 988876321 1 115999999999999999999999999987654333211111 012234456
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhh--hhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHH
Q 011056 263 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMG--REIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 340 (494)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 340 (494)
++++...++ +.+....+.....++....+.-+.+.+.. .+..+.+. . ...+...+...++.+|.+.
T Consensus 235 kDl~~l~~~--~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~--------~--~~~ifg~vt~~~G~lGvl~ 302 (493)
T KOG1330|consen 235 KDLKVLAKI--KVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDH--------N--ATLIFGGVTCAGGSLGVLF 302 (493)
T ss_pred HHHHHHHcc--CceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCcc--------c--cchhhhhHHHhhchhhhee
Confidence 666666554 33322222222222111111111222221 11111111 1 1123333445566777777
Q ss_pred HHHHHhhhc----c---hHHHHHHHHHHHHHHHHH-HHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhh-hc
Q 011056 341 MEKLCRKWG----A---GFIWGISNILMALCFLAM-LILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY-SV 411 (494)
Q Consensus 341 ~g~l~dr~g----~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~ 411 (494)
+|.++||+. + .+.--+...+.+...+.+ ...... +. .+.+ ..+.++++|....... ..
T Consensus 303 Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~-----------~~-~s~~-~~~il~~~g~~~~~~~~a~ 369 (493)
T KOG1330|consen 303 GGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF-----------TS-SSMI-FGLILFLVGETISWFNWAT 369 (493)
T ss_pred hHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh-----------hh-HHHH-HHHHHHHHHHHHHhccccc
Confidence 788888742 2 222111111111111111 111100 11 0222 2233334444333222 44
Q ss_pred hhhhHhhhcccCCCCcchhhhHHHHHHHH-HHHHHhhhhhhhhhhc
Q 011056 412 PYALVSIRTESLGLGQGLSLGVLNLAIVI-PQIVVSMGSGPWDQLF 456 (494)
Q Consensus 412 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~l~~~~~g~l~~~~ 456 (494)
...+..+++|+ ++|.+++++......+ |.+-+|.+.|.+.|..
T Consensus 370 n~~i~l~vV~p--~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 370 NNPIFLEVVPP--SRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred ccceeeEecCc--ccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 45567788898 9999999987765554 4444566999998865
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-20 Score=175.50 Aligned_cols=264 Identities=11% Similarity=0.026 Sum_probs=176.8
Q ss_pred HHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcch
Q 011056 58 VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPR 137 (494)
Q Consensus 58 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (494)
.+|.++...+.+.+.+++.+++++++++.|.+.| |+.-.+.+...+++....+.+.. ...|+ .
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~----r~~ls~~l~~~~~~w~~~~~~~~-~~~s~------------~ 135 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGD----RFPLSKGLSVSGILWGLFGFLTA-AVHSF------------P 135 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHH----hCChHHHHHHHHHHHHHHHHHHH-HHhhh------------H
Confidence 3678888899999999999999999999999999 88866655554444444444444 46666 3
Q ss_pred HHHHHHHHHHhhcccc----ccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccch
Q 011056 138 AIAVFVFGFWILDVAN----NMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANL 210 (494)
Q Consensus 138 ~~~~~~~~~~~~~~~~----~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 210 (494)
......+..++++.+. ....+ .+++|+. +++++....++|+++|++++..+ +. ..+.....+|
T Consensus 136 ~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~-r~~~~~a~~~~g~i~ggliA~g~-----~~----~~~~~~~~gW 205 (495)
T KOG2533|consen 136 GLIALRFLLGLFESGGWPGVVAILGNWYGKSERGL-RMGIWYASASLGNIFGGLIAYGV-----FK----LNGSGGLAGW 205 (495)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhh-hHHHHHHhcchhhHHHHHHHHHh-----hh----hcCCCCcCCc
Confidence 3344455555543332 22222 7788887 99999999999999999986541 00 0011112389
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCC------CccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHH
Q 011056 211 KSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF------SEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTA 284 (494)
Q Consensus 211 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (494)
||.|++.+++.++..++.++++|+.|.+..-..+++ ..+++.+....++...+++++.+++ +.+|.+++..+
T Consensus 206 ~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d--p~vw~~~l~~~ 283 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKD--PGVWPFSLCYF 283 (495)
T ss_pred eeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhc--hhHHHHHHHHH
Confidence 999999999999999999999999987432111111 0000111111112456678888888 99999999999
Q ss_pred HHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh----hcchHHHHHHHHH
Q 011056 285 LTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK----WGAGFIWGISNIL 360 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~g~~~~~~~~~~~ 360 (494)
+.....+.+..|.|.++.+ ..+.+..+. ........++++++.++.|.++|| ..+|........+
T Consensus 284 ~~~lv~~~~~~~lpl~l~~-~~~~s~~~a----------~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 284 FLKLVNYGFSYWLPLYLKS-NGGYSELQA----------NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred HHhhccccHHHHHHHHHHc-CCCcChHHh----------ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999888889999999875 211211111 122334567789999999999999 4555555444443
Q ss_pred H
Q 011056 361 M 361 (494)
Q Consensus 361 ~ 361 (494)
.
T Consensus 353 ~ 353 (495)
T KOG2533|consen 353 Y 353 (495)
T ss_pred H
Confidence 3
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-18 Score=151.42 Aligned_cols=357 Identities=14% Similarity=0.105 Sum_probs=236.3
Q ss_pred HHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 011056 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (494)
Q Consensus 46 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (494)
......+.++.+.+++|+|.+..|++.++..++..+.+|+..+++. |+|.+|.+.. +.++..++..+=...+..
T Consensus 27 ~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar----~~g~er~l~~-~Llli~~G~~iR~~~~~~- 100 (395)
T COG2807 27 AITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLAR----RFGEERSLFL-ALLLIAAGILIRSLGGLP- 100 (395)
T ss_pred hhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHhhHHHHHH-HHHHHHHHHHHHhcccHH-
Confidence 4445557888999999999999999999999999999999999999 9999886665 666666666554332111
Q ss_pred cccCCCCCCcchHHHHHHHHHHhhccccccccc--cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccc
Q 011056 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG--KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSAC 203 (494)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~ 203 (494)
.......+.+.+..+.++......- -+++-+ ..++.+....++|..+++.+.-- ....
T Consensus 101 --------~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~-~mtglYs~sl~~~aaLaa~lavp--------la~~--- 160 (395)
T COG2807 101 --------LLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVG-LMTGLYSTSLGAGAALAAALAVP--------LAQH--- 160 (395)
T ss_pred --------HHHHHHHHHHhhHHHHHHhhhHHHHhhcccchh-hHHhHHHHHHHHHHHHHhhhhhH--------HHHh---
Confidence 1112222233333333333322222 223333 47888888888888888776432 1111
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHH
Q 011056 204 NVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVT 283 (494)
Q Consensus 204 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (494)
..+||.....-+...++..++++.-. .+++....+. + .++..+.+|+ |.-|.+.+.+
T Consensus 161 ---~~gW~~aL~~WAl~allAl~~WlPq~-~r~~~~~~~~--------------~---~~~~~~vw~~--~~aW~vtLfm 217 (395)
T COG2807 161 ---SGGWRGALGFWALLALLALLIWLPQA-LREQAASIAT--------------K---LVSVRKVWRS--PLAWQVTLFM 217 (395)
T ss_pred ---hccHHHHHHHHHHHHHHHHHHHhhhc-cccccccccc--------------c---cccccccccC--chhHHHHHHH
Confidence 12799988888777776665543321 1111011000 0 0011234455 8889999999
Q ss_pred HHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh-cchHHHHHHHHHHH
Q 011056 284 ALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAGFIWGISNILMA 362 (494)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~~~~~~~~~~~~~ 362 (494)
.++...+++...++|.++.+..++ .. .+.....+..+++++.++..+.+.+|. .+|+..+....++.
T Consensus 218 GlqS~~~Y~~~~WLP~ili~~G~s----------a~--~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l 285 (395)
T COG2807 218 GLQSLLYYIVIGWLPAILIDRGLS----------AA--EAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLML 285 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHcCCC----------HH--HhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999999999999988654321 11 112334456778899999999999976 56666677777787
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHH
Q 011056 363 LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQ 442 (494)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 442 (494)
++.+.+.+. |. ...+...++.|++.|..++....++.+..++. ++.+.-.|+.+..+++-.
T Consensus 286 ~G~~G~~~~--------------P~----~~~~lw~~llG~G~G~~F~laL~li~~rs~~a-~~Aa~LSgmaQg~GYllA 346 (395)
T COG2807 286 VGLVGLLLA--------------PG----QLPILWALLLGLGQGGAFPLALTLILLRSSDA-AIAAALSGMAQGVGYLLA 346 (395)
T ss_pred HHHHHHHHh--------------hh----hHHHHHHHHHhCccchHHHHHHHHHHhhcCCh-HHHHHHHHHhhhhhHHHH
Confidence 888877766 32 12222358899999999999888888877653 677778888888999999
Q ss_pred HHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 443 IVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 443 ~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
++||.+.|++.|..| ++...+.....+.++..+..+..-|
T Consensus 347 a~GP~l~G~lhDa~g-sw~~~~~~l~~~~i~m~i~Gl~a~r 386 (395)
T COG2807 347 AFGPWLFGFLHDATG-SWSAPLVLLALATLLMLIFGLRAGR 386 (395)
T ss_pred hhhhhhHhHHHHhcC-ChHHHHHHHHHHHHHHHHHHhhcch
Confidence 999999999999988 3455555555555555554444433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=155.57 Aligned_cols=359 Identities=13% Similarity=0.093 Sum_probs=228.9
Q ss_pred hhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHH-
Q 011056 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVF- 144 (494)
Q Consensus 66 ~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 144 (494)
+..+...++..+..++..|+.|.++| +.|+||+++-....+.+++.+++++.++-. ..+.....+.+
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD----~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s--------~~~~~l~~~il~ 125 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIAD----YPGPRKKFFGFFTAIGIISTFLLWFIPPGS--------YLLLLLLFLILA 125 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhc----cCCCcchHHHHHHHHHHHHHHHHHHhCCCc--------hHHHHHHHHHHH
Confidence 45688888999999999999999999 999999999878888888888777776620 11111111111
Q ss_pred --HHHhhccccccccc--cccchhhHHhHHHHHHHHHHHHHHhhhc--cc-ccccccchhhhcccccccccchhHHHHHH
Q 011056 145 --GFWILDVANNMTQG--KDHRRTRVANAYFSLFMAVGNILGYATG--SF-SGWFKILPFTLTSACNVDCANLKSAFFLD 217 (494)
Q Consensus 145 --~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~g~~~g~~~g--~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 217 (494)
+.....+.++.... .++++..+..+.-.....+|..+--+.. .+ ..-....+...-........+-|..+.+.
T Consensus 126 ~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~ 205 (438)
T COG2270 126 SIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLA 205 (438)
T ss_pred HHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHH
Confidence 11122444444444 2222222243333333333333222221 00 00000000001111122233678899999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhch--HHHHHHHHHHHHHHHHHHHHHh
Q 011056 218 VIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS--GTIWIILIVTALTWLGWFPFLL 295 (494)
Q Consensus 218 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 295 (494)
++..++..+..+...||.++..... .+.....++++++.+|+.+ +.+...++..++..=+......
T Consensus 206 A~W~li~~iPm~~~v~~~~~~~~~~------------~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~ 273 (438)
T COG2270 206 ALWWLLFALPMILNVHDAEKISSPP------------PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILA 273 (438)
T ss_pred HHHHHHHHhHHHhcccccccccccc------------hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHH
Confidence 9999999998888888876432111 1123445566665555542 5666677777766656666655
Q ss_pred hchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 011056 296 FDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVA 375 (494)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (494)
+...|-. ..++.+.. +...+ .....+.+++++++.|+|.||+|.|+++..+.++..+.++...+..
T Consensus 274 ~~~~fg~-~~~gls~~---------~lll~-g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~--- 339 (438)
T COG2270 274 MGGVFGA-ADLGLSST---------ELLLI-GIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE--- 339 (438)
T ss_pred HHHHHHH-HHcCccHH---------HHHHH-HHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc---
Confidence 5555443 22332221 12222 2335677899999999999999999999988888777766655552
Q ss_pred hhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 011056 376 IHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 455 (494)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~ 455 (494)
.....++...+.|...|...+...++..+.+|+ ++.++.+|++++....++.+||...+.+.+.
T Consensus 340 --------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~--~k~~~fFglyaltgra~S~~gp~lv~v~t~i 403 (438)
T COG2270 340 --------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPK--GKEGRFFGLYALTGRAASFLGPFLVAVITQI 403 (438)
T ss_pred --------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC--ccccceeehhhhhhhHHHHHHHHHHHHHHHH
Confidence 234566677888999999999999999999999 9999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHh
Q 011056 456 FGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 456 ~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
+|+ ....+....++..++.++..
T Consensus 404 Tg~-~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 404 TGS-SRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hcc-hhhHHHHHHHHHHhhHhhEE
Confidence 873 45555566666666655443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=164.70 Aligned_cols=391 Identities=14% Similarity=0.057 Sum_probs=219.5
Q ss_pred CCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHH
Q 011056 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVF 142 (494)
Q Consensus 63 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (494)
+++...+.+..+..++..++|+++|++.| |+|||+++.. .+++++++.++++++..... +...+.++..+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD----~~GRK~vYG~-~liImIi~t~~~~~s~~~~~-----~~~~m~~L~~~ 150 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGD----KFGRKKVYGK-ELIIMIICSALSGLSVGTTS-----PLGVMMTLCFF 150 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHh----hhcchhhhhH-HHHHHHHHHHHhccCCCCCC-----CcchhhHHHHH
Confidence 55667788889999999999999999999 9999998876 56666667767766544310 01122222222
Q ss_pred HHHHH--h--hccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccc--cccchhhhcccccccccchhHH
Q 011056 143 VFGFW--I--LDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGW--FKILPFTLTSACNVDCANLKSA 213 (494)
Q Consensus 143 ~~~~~--~--~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 213 (494)
+...+ + =......... .+++|+. ..+.+..+.+.|...|.+++-++.. ...++-. ........-||..
T Consensus 151 R~~LGiGIGGDYPlSAtI~SE~an~~~RGa-~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~--~~~~~ld~vWRl~ 227 (538)
T KOG0252|consen 151 RFLLGIGIGGDYPLSATIMSESANKKTRGA-FIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGP--STYPHLDGVWRII 227 (538)
T ss_pred HHHhhccccCCCcchHHHhhhhhhhccccc-eeEEEEEecchhHhhccHHHHHHHHHHhccCCCC--CCchHHHHHHHHH
Confidence 22222 2 1122222222 5556665 6677777777777777766554210 0111110 0011222358888
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC-----------CC---ccccc--cchhhhhhHHHHHHHHhhh-chHHH
Q 011056 214 FFLDVIFIAITTCISASAAHEVPLGSHDQSAP-----------FS---EEGHE--QSSDVHEAFLWELFGTFRY-FSGTI 276 (494)
Q Consensus 214 f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-----------~~---~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~ 276 (494)
+.+..+..+++ +.....+||+++.+....++ .. ++++. ...+..+..++.+.+.+.. .-+++
T Consensus 228 ~glg~vpa~~~-ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~L 306 (538)
T KOG0252|consen 228 FGLGAVPALLV-LYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHL 306 (538)
T ss_pred HHHHHHHHHHH-HHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHHHH
Confidence 88776555444 44556789987644100000 00 00000 0001111112212222211 00333
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 011056 277 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI 356 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~ 356 (494)
...+...|+.-.+++....+....+.. .+..+... .+..-...+.....+.....+++..+...++|++||++..+.
T Consensus 307 lgt~~~WFllDiafy~~nL~~s~I~~~--ig~~~~~~-~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 307 LGTAGTWFLLDIAFYGQNLFQSVIFSA--IGVIPSAN-TYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHhhhhhhhccccHHHHHHHh--hccCCCcc-hHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 334444444445555555555555532 22222221 111111122222333344456677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhh-HhhhhhhchhhhHhhhcccCCCCcchhhhHHH
Q 011056 357 SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG-PLAITYSVPYALVSIRTESLGLGQGLSLGVLN 435 (494)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 435 (494)
+.+++.+.++.+.... .+..+....++...+..+ +.-.-......+-+|.+|. +.||++.|+..
T Consensus 384 GF~~~~i~~~~~~~~y-------------~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa--rvR~t~hGIsA 448 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPY-------------NQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA--RVRSTCHGISA 448 (538)
T ss_pred hHHHHHHHHHHHcCCc-------------ccccccCceeehHHHHHHHHhcCCCceeEEeehhhchH--HHhhhhhhHHH
Confidence 9999988888776653 100112223333333322 2222234556677899999 99999999999
Q ss_pred HHHHHHHHHHhhhhhhhhh-----hcCCCCcchHHHHHHHHHHHHHHHhhcccCCCCC
Q 011056 436 LAIVIPQIVVSMGSGPWDQ-----LFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 488 (494)
Q Consensus 436 ~~~~~g~~l~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 488 (494)
.++..|.+++.....++.+ ..| ....+++.+.+++++.+..+++ ||++.+
T Consensus 449 A~GK~GAivg~~~F~~~t~~~yp~~~g--~~~v~~i~~~~~~~gi~~T~l~-pEtk~~ 503 (538)
T KOG0252|consen 449 ASGKAGAIVGAFGFLYLTDHNYPPNIG--VRNVFIILAGCMLLGILFTLLI-PETKGK 503 (538)
T ss_pred HhccchHHHHHHHhhHhhhccCCcccc--chHHHHHHHHHHHHhHheeEEe-eccccc
Confidence 9999999999999999888 433 5567888888888887776654 576654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-23 Score=202.22 Aligned_cols=368 Identities=15% Similarity=0.170 Sum_probs=217.0
Q ss_pred hhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcc---ccccccCCCCCCcchHHHHH
Q 011056 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA---DIGWLLGDRGDFRPRAIAVF 142 (494)
Q Consensus 66 ~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 142 (494)
.+.+++.+...++..+++++.|.++| |+|||+.++. +.++..++.++..+++ ++..+. ..+.+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d----~~GRk~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~--------~~R~~~ 112 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLAD----RYGRKPALII-SALLMIIGSILIAFAPSYNNFWMLL--------IGRFLI 112 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccc----cccccccccc-ccccccccccccccccccccccccc--------cccccc
Confidence 35788999999999999999999999 9999987777 6667777888888888 774333 223444
Q ss_pred HHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHH
Q 011056 143 VFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVI 219 (494)
Q Consensus 143 ~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 219 (494)
+++.+........... +++.|++ ...+......+|..++..++.... .... ...||..+.+..+
T Consensus 113 G~~~g~~~~~~~~~~~E~~~~~~R~~-~~~~~~~~~~~G~~~~~~~~~~~~------~~~~------~~~Wr~~~~~~~~ 179 (451)
T PF00083_consen 113 GFGIGGAYVVSPIYISEIAPPKHRGF-LSSLFQLFWALGILLASLIGYIVS------YYSD------NWGWRILLIFGAI 179 (451)
T ss_pred cccccccccccccccccccccccccc-cccccccccccccccccccccccc------cccc------ccccccccccccc
Confidence 4444443322222222 6677776 777888888888877776653311 0000 1268888888776
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCccc----------cc----cchhhh------hhHHHHHHHHhhhchHHHHHH
Q 011056 220 FIAITTCISASAAHEVPLGSHDQSAPFSEEG----------HE----QSSDVH------EAFLWELFGTFRYFSGTIWII 279 (494)
Q Consensus 220 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~----------~~----~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 279 (494)
..++..+ ...++||+|++...+++.++.++ ++ +..++. +..++++++..+. +++....
T Consensus 180 ~~l~~~~-~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 257 (451)
T PF00083_consen 180 PSLLVLL-LRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKY-RKRLLIA 257 (451)
T ss_pred ccccccc-cccccccccceecccccccccccccccccccccccccccccccccccccccceeeeeccccccc-ccccccc
Confidence 6655433 45788999986543332221110 00 000000 0112222222110 1222222
Q ss_pred HHHHHHHH-HHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 011056 280 LIVTALTW-LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISN 358 (494)
Q Consensus 280 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~ 358 (494)
+....+.. .+......|.+....+. +.++. ........+...++.++...+.||+|||++++.+.
T Consensus 258 ~~l~~~~~~~g~~~~~~~~~~i~~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~ 323 (451)
T PF00083_consen 258 LLLQFFQQFSGINFIFYYSPSIFENA--GISNS------------FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGL 323 (451)
T ss_pred cccccccccccccccccccccccccc--ccccc------------ccccccccccccccccccccccccccccccccccc
Confidence 22222222 22222333333333211 11110 01112233445666677779999999999999888
Q ss_pred HHHHHHHHHHH-HHHHhhhhccccCCCCCCCc--hHHHHHHHHHHHhhHhh-hhhhchhhhHhhhcccCCCCcchhhhHH
Q 011056 359 ILMALCFLAML-ILYYVAIHMDYRGHDLPPNG--IVIAALIIFTILGGPLA-ITYSVPYALVSIRTESLGLGQGLSLGVL 434 (494)
Q Consensus 359 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 434 (494)
.+.+++.+.+. ..... ++.. .....+....+....++ ...+..+.+..|.+|. +.|+++.|+.
T Consensus 324 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt--~~R~~~~~~~ 390 (451)
T PF00083_consen 324 LLMAICSLILGIIFFLG-----------VSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT--KVRSTGIGLS 390 (451)
T ss_pred ccccccccccccccccc-----------cccccccccccceeeeeccccccccccccccccccccccc--cccccccccc
Confidence 88887777664 11100 1100 01112222222222222 3346777888999999 9999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 011056 435 NLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQKP 490 (494)
Q Consensus 435 ~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 490 (494)
.....+++++++.+...+.+..+ ....+.+.++++++..++.+++.||+++++.
T Consensus 391 ~~~~~i~~~i~~~~~~~~~~~~~--~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 391 YAVGRIGGFIIPFLFPYLFNNLG--GWGVFLIFAGVCLIAIIFVYFFLPETKGKTL 444 (451)
T ss_pred ccccccccccccccccccccccc--ccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence 99999999999999888887765 4556777777778888888888999988653
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-17 Score=155.14 Aligned_cols=376 Identities=14% Similarity=0.081 Sum_probs=201.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCC-CCcchhHHHH
Q 011056 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFIVCG 107 (494)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~-Grr~~~l~~~ 107 (494)
++.++......+...+.+.....++|.|. +++|+++.+.+.+.+.+.....++.+++|+++| |+ ||||.+++ +
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaD----RilGrrr~ili-G 82 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLAD----KVLGNRMAVML-G 82 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccCcHHHHHH-H
Confidence 34455544444555556655666778776 568999999999999999999999999999999 98 99997766 5
Q ss_pred HHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cc--cchhhHHhHHHHHHHHHHHHHH
Q 011056 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KD--HRRTRVANAYFSLFMAVGNILG 182 (494)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~r~~~~~~~~~~~~~~g~~~g 182 (494)
.+...++.+++...++.. ........+..++.+......+...+ ++ ++|.+ +.++.....++|..++
T Consensus 83 ~il~~lg~lll~~~~~~~-------~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~s-gf~i~Y~~~nlG~~ia 154 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHP-------SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDG-GFSLMYAAGNVGSIIA 154 (493)
T ss_pred HHHHHHHHHHHHHhhcch-------hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccc-eehHHHHHHHHHHHHH
Confidence 555555655554322110 00001111222332322222222222 33 24555 8999999999999999
Q ss_pred hhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchh------
Q 011056 183 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD------ 256 (494)
Q Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~------ 256 (494)
|.+.+++. . ..+|++.|.+.++..++..+..+. .++...+.....+ ++.++++....
T Consensus 155 p~l~g~L~---------~------~~Gw~~~F~iaaigm~l~li~~~~-~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 217 (493)
T PRK15462 155 PIACGYAQ---------E------EYSWAMGFGLAAVGMIAGLVIFLC-GNRHFTHTRGVNK-KVLRATNFLLPNWGWLL 217 (493)
T ss_pred HHHHHHHH---------h------hhChHHHHHHHHHHHHHHHHHHHH-hhhhhccCCCCCC-CCchhhhHHHHHHHHHH
Confidence 99977631 0 127999998876654444333322 2211111000000 00000000000
Q ss_pred -----------h-hhhHHHH----------------HH-HHhhh-chHHHHHHHHHH---HHHHHHHHHHHhhchhhhhh
Q 011056 257 -----------V-HEAFLWE----------------LF-GTFRY-FSGTIWIILIVT---ALTWLGWFPFLLFDTDWMGR 303 (494)
Q Consensus 257 -----------~-~~~~~~~----------------~~-~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 303 (494)
. ....... +. +...+ -+++++.+.... .+.|..+.-..+-.+.|..+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~ 297 (493)
T PRK15462 218 VLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDR 297 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 0 0000000 00 00000 012332222221 12222111111111222211
Q ss_pred hhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--hH-----HHHHHHHHHHHHHHHHHHHHHhhh
Q 011056 304 EIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA--GF-----IWGISNILMALCFLAMLILYYVAI 376 (494)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 376 (494)
++ +. +-.+++. .. .+...++.+..++.+++..++-.|..+ |. -+.++.++.+++++.+.+......
T Consensus 298 ~v-d~---~~~g~~i--p~-~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~ 370 (493)
T PRK15462 298 FV-NR---DMFGYTV--PT-AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSA 370 (493)
T ss_pred hc-cc---hhcceee--CH-HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 11 00 0001211 12 233455666677777777777555522 21 256788899999888766532111
Q ss_pred hccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHH-HHHHHHHhhhhhhh
Q 011056 377 HMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAI-VIPQIVVSMGSGPW 452 (494)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~g~~l~~~~~g~l 452 (494)
+ ....+.+.++....+.++|.-...|+..+++++..|+ +.+|..+|++.... .+|+.++..+.+..
T Consensus 371 ~--------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~--~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 371 M--------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP--GVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred C--------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 0112566678888889999999999999999999999 99999999986633 56666655555544
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-17 Score=159.01 Aligned_cols=348 Identities=15% Similarity=0.122 Sum_probs=199.9
Q ss_pred HHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCC
Q 011056 51 LSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD 130 (494)
Q Consensus 51 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (494)
...++.+.+++|-+ ....|+.+...+..++..|+.|+++| .+|||..++. +.++.+++.+..+.++|..
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSD----lfGRr~~~i~-g~~l~vvG~Iv~atA~~~~----- 132 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSD----LFGRRYFFII-GSLLGVVGSIVCATAQNMN----- 132 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHH----HhcchHHHHH-HHHHHHhHHHHhhcCCcHH-----
Confidence 45677788999875 67788889999999999999999999 9999775554 8888889999999999983
Q ss_pred CCCCcchHHHHHHHHHHhhccccccccc--cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhccccccccc
Q 011056 131 RGDFRPRAIAVFVFGFWILDVANNMTQG--KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCA 208 (494)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~ 208 (494)
.......+.+++.+........... +.+.|.. ..++.....-.....++.++... . ...
T Consensus 133 ---~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~-~~~~~~~~~i~~~~~~~~ia~~~-------------~--~~~ 193 (599)
T PF06609_consen 133 ---TFIAGMVLYGVGAGVQELAALAISELVPNKWRGL-GLAIASIPFIITTWISPLIAQLF-------------A--AHS 193 (599)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhh-HhHHHHHHHHhhhcccHHHHHHh-------------c--cCC
Confidence 3334445555555443322211111 4444432 33333322222222233332210 0 113
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcccCCCCCC-CCCC-C-CCC---------------------------c-cccccchhh
Q 011056 209 NLKSAFFLDVIFIAITTCISASAAHEVPLGS-HDQS-A-PFS---------------------------E-EGHEQSSDV 257 (494)
Q Consensus 209 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~-~-~~~---------------------------~-~~~~~~~~~ 257 (494)
+|||.|++..+...+..+..+++...+++.+ +.++ . ++. . +..+++.+-
T Consensus 194 ~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~V 273 (599)
T PF06609_consen 194 GWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHV 273 (599)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccc
Confidence 8999999998876666554443332222211 1111 0 000 0 001111100
Q ss_pred hh-----------hHHHHH----------HHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccc
Q 011056 258 HE-----------AFLWEL----------FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNY 316 (494)
Q Consensus 258 ~~-----------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (494)
.. -.+.|. .+.+|+ +|.+...++..++....++....+.|.... .+|+.++...
T Consensus 274 Ia~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~-~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~-~vf~~d~~~~--- 348 (599)
T PF06609_consen 274 IAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKD-RRGFAALLVISFISGMNFFSVNILWPQQVV-NVFGSDPISI--- 348 (599)
T ss_pred hhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCccc---
Confidence 00 000111 122333 244544445555554445555555565543 3454443210
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH-HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHH
Q 011056 317 ATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAAL 395 (494)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (494)
. ..+ +.....+.+...+..+.+.+..+++|-|-. +++..++.+++.++.... ++ +....+
T Consensus 349 ~---~~~-~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~-------------~~--n~~~~i 409 (599)
T PF06609_consen 349 T---EIG-WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR-------------PD--NKNAAI 409 (599)
T ss_pred c---eee-hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc-------------CC--CcchHH
Confidence 0 011 222334556677788888999888765544 566666666555555543 33 222344
Q ss_pred HHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011056 396 IIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 454 (494)
Q Consensus 396 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~ 454 (494)
...++.|++.+..........+-.+|+ +..|++.|+......+|+.+|..+...+..
T Consensus 410 ~~~~l~g~giG~~~~~~~~~~ql~~p~--~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 410 AFLVLAGFGIGGILVPAIVIAQLIVPD--EDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred HHHHHHHHhHHHHHHHHHHeeEeeeCc--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 566677888877776666777777887 899999999999999999999888866553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-19 Score=149.03 Aligned_cols=378 Identities=16% Similarity=0.194 Sum_probs=223.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHH
Q 011056 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (494)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~ 111 (494)
.++.++...++.-++|.........+.++.+++.++..++.++|.....+.+.++|++.|| |+|-|.--++.+ ++.
T Consensus 45 ~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr---~fgir~gtii~~-~fv 120 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDR---RFGIRLGTIILC-IFV 120 (459)
T ss_pred HHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehh---hhhhhHHHHHHH-HHH
Confidence 3445677777777888887777777888999999999999999999999999999999997 677655444423 233
Q ss_pred HHHHHHHhh---ccccccccCCCCCCcchHHHHHHHHHHhhccccccccc-------cccchhhHHhHHHHHHHHHHHHH
Q 011056 112 AVAVLLIGL---SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG-------KDHRRTRVANAYFSLFMAVGNIL 181 (494)
Q Consensus 112 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~r~~~~~~~~~~~~~~g~~~ 181 (494)
.++-+.++. .+.+ +.+...+..+++-+-+....+. ..++-. .++|+.....-+|..+
T Consensus 121 ~~GqliFa~Ggi~~aF------------w~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn-~vfGlqlSvAR~Gstv 187 (459)
T KOG4686|consen 121 FLGQLIFAAGGISHAF------------WTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELN-FVFGLQLSVARLGSTV 187 (459)
T ss_pred HHHHHHHHhchHHHHH------------HHHHhhheeeccCchhhhhhhcceeEEEecCcccc-chhhHHHHHHHhhcee
Confidence 344444422 2222 2222222222332222233333 334444 4788888888888776
Q ss_pred Hhhhcccccccccchhhhcccccccccc---hhHHHHHHHHHHHHHHHHH---hhcccCCCCCCCCCCCCCCccccccch
Q 011056 182 GYATGSFSGWFKILPFTLTSACNVDCAN---LKSAFFLDVIFIAITTCIS---ASAAHEVPLGSHDQSAPFSEEGHEQSS 255 (494)
Q Consensus 182 g~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~ 255 (494)
-..+.. |..+..+..++.- .-..............++. .-+..++.+..-.+++....|
T Consensus 188 Nf~lm~---------~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge------ 252 (459)
T KOG4686|consen 188 NFLLMP---------FLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGE------ 252 (459)
T ss_pred eeeecH---------HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccC------
Confidence 554433 2222111111100 0011111111111111111 111111111000000000000
Q ss_pred hhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHH
Q 011056 256 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 335 (494)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (494)
.+. .+..++..+++|.+.++.++.+.+++++....+.+. ++.|+.++..+ +.+-..+.. .+.
T Consensus 253 ---~pk----Ltdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF-~~rfGlS~~~a---------~~i~s~vy~-Isa 314 (459)
T KOG4686|consen 253 ---EPK----LTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFF-QKRFGLSAVSA---------GNILSTVYG-ISA 314 (459)
T ss_pred ---Ccc----cccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHH-HHhhCCChhhc---------cchhhhhhh-hhh
Confidence 000 111222337899999999999999998888777766 45577666543 122223333 367
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhh
Q 011056 336 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 415 (494)
Q Consensus 336 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 415 (494)
+.+++.|.++||.|++..++.+..+..+.--...++ +.+...+.+.+.|+.+.......+.+
T Consensus 315 v~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F------------------t~lsPy~~m~~lGLsysllAcslWP~ 376 (459)
T KOG4686|consen 315 VLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF------------------TFLSPYTSMTFLGLSYSLLACSLWPC 376 (459)
T ss_pred hhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh------------------hhccHHHHHHHHhhhHHHHHHHHhhh
Confidence 888899999999999988876655544443333333 13445567778888888877778899
Q ss_pred HhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcc--h-HHHHHHHHHHHHHHHhh
Q 011056 416 VSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSP--A-FAVGGISALAGGLIAIL 480 (494)
Q Consensus 416 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~--~-~~~~~~~~~i~~~~~~~ 480 (494)
++.++|+ ++.|+++|..+..+++|-++.|.+.|.+.|.-|+ +.. . |+..+.+++.+..+.+.
T Consensus 377 va~~vpE--~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~-y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 377 VASLVPE--EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS-YDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred hhhhCCH--HHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc-hhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999 9999999999999999999999999999998663 322 2 34444444444444433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-17 Score=158.64 Aligned_cols=376 Identities=13% Similarity=0.060 Sum_probs=208.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCC-CcchhHHHHHH
Q 011056 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG-RRRPFIVCGAI 109 (494)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~G-rr~~~l~~~~~ 109 (494)
.........+...+. ......++++. +++|+|+++++...++..+...+ .+++|.++||++ .+| |||.+++.+.+
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~-i~G~rRr~~l~~~~~ 103 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFP-LFGYTKRWYLVLSGL 103 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC-CCCccchHHHHHHHH
Confidence 344445455555555 44434455555 57999999999999999988777 556999999443 223 35666665655
Q ss_pred HH-HHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc--cccchhhHHh---HHHHHHHHHHHHHHh
Q 011056 110 SI-AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG--KDHRRTRVAN---AYFSLFMAVGNILGY 183 (494)
Q Consensus 110 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~~~---~~~~~~~~~g~~~g~ 183 (494)
.. .++.......++.. ......+.+..++....+........ .++++ +... +......++|..+|+
T Consensus 104 l~~~~~~~~l~~~~~~~-------~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~-~~~~~~~s~~~~~~~~G~~vg~ 175 (468)
T TIGR00788 104 LGSAILYGLLPGKVSSA-------KVAAAFIFLAALAKALYDVLVDSLYSERIRESP-SAGPSLVSWMWGASATGGLISS 175 (468)
T ss_pred HHHHHHHHhcccccchH-------HHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCC-CcCCCeeeHHHHHHHHHHHHHH
Confidence 54 23333332222220 00001112222333334454444444 12222 2122 233333457888888
Q ss_pred hhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCC-CCCCC---ccccccchhhhh
Q 011056 184 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ-SAPFS---EEGHEQSSDVHE 259 (494)
Q Consensus 184 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~---~~~~~~~~~~~~ 259 (494)
.+++.+ ... .+|+..|++.+.+.++. .+...+.||++.....+ .+++. ...........+
T Consensus 176 ~l~G~l-----~~~----------~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (468)
T TIGR00788 176 LLGGPL-----LDK----------TLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVK 239 (468)
T ss_pred HHHHHH-----HHh----------cCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccchhhhhhhhhhHHHHHH
Confidence 887752 111 16888998887777666 33445667754211111 00000 000000000122
Q ss_pred hHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHH
Q 011056 260 AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 339 (494)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 339 (494)
...++.++.+++ |.++..++..++.+........ ...+..++..+.++.. .+ ......+++.+++..
T Consensus 240 ~~~~~l~~~l~~--~~i~~~l~fifl~~~~~~~~~~-~~f~~~~~~lG~s~~~---------~G-~~~~~~~v~~i~g~~ 306 (468)
T TIGR00788 240 VQILGLRGAIQL--LEIAKPLIFIFLSYANLPGASG-SVFCATTQCLPGGPSF---------SG-MSKVVGNLGSLCGVG 306 (468)
T ss_pred HHHHHHHHHHhc--HHHHHHHHHHHHHHhhcCCCCc-eeEEEEcccCCCCcch---------hh-hHHHHHHHHHHHHHH
Confidence 234556666666 7776655544442111111110 0001111122222211 12 333445688899999
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH-HHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhh
Q 011056 340 LMEKLCRKWGAGFIWGISNILMALCFLAMLIL-YYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 418 (494)
Q Consensus 340 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 418 (494)
+.+++.+|++.|+++.++.++.+++.+..... ...+.. ...+ +.+.......+.+++.+........++++
T Consensus 307 ~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~-----~gi~---~~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 378 (468)
T TIGR00788 307 GYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLA-----FGIS---DEVFVLGDSIIAEVLAQLKFMPFLVLLAR 378 (468)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccc-----cCCC---CeeeeeehhHHHHHHHHHHHccHHHHHHH
Confidence 99999999999999998888887776553221 000000 0001 22334455667777888777777899999
Q ss_pred hcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 419 RTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 419 ~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
.+|+ +.+|+.+++.+....+|+.+++.++|.+.+..|
T Consensus 379 ~~p~--~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 379 LCPS--GCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred hCCC--CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999 999999999999999999999999999999877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-16 Score=143.84 Aligned_cols=332 Identities=13% Similarity=0.127 Sum_probs=194.7
Q ss_pred hHHHHHHHhCCCchh-HHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCC
Q 011056 53 LLTPYVQELGIPHAW-ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (494)
Q Consensus 53 ~l~~~~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (494)
..|++.+++|+++++ .|.+.+++..+++++++++|+++| |+|.||.+.+ +.+..++..++.++++++
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaD----rlG~K~vL~l-~~l~Wsl~t~L~~fa~Sl------- 115 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTD----YLRYKPVLVL-QALSFVCVWLLLLLGTSV------- 115 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHH-HHHHHHHHHHHHHHHHHH-------
Confidence 456677899999999 999999999999999999999999 9999886655 777777778888888777
Q ss_pred CCCcchHHHHHHHHHHhhccc---cccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccc
Q 011056 132 GDFRPRAIAVFVFGFWILDVA---NNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNV 205 (494)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~ 205 (494)
..+.+..+..++.... ...... ++++|++ +.++...+..+|.++++++++++ . .++|.
T Consensus 116 -----~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~r-atsi~~sg~~vG~~Ia~~L~qll--~-s~gWr------- 179 (511)
T TIGR00806 116 -----WHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQR-AAAYSRAAVLLGVFLSSVLGQLL--V-TLGWI------- 179 (511)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--H-hcCch-------
Confidence 3334444444443222 222222 8888887 99999999999999999997761 1 12221
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhcccCCCCCC----CC--C-----C-CCCCcccc-ccc---hhhh----hhHHHHH
Q 011056 206 DCANLKSAFFLDVIFIAITTCISASAAHEVPLGS----HD--Q-----S-APFSEEGH-EQS---SDVH----EAFLWEL 265 (494)
Q Consensus 206 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~----~~--~-----~-~~~~~~~~-~~~---~~~~----~~~~~~~ 265 (494)
+++...++......+..++. +++|..++.. ++ + + +...+++. +.. +... +.-+.++
T Consensus 180 ---~y~~Ln~Isl~s~~~a~~~a-~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (511)
T TIGR00806 180 ---SYSTLNIISLVFMTFSVFLA-LFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSEL 255 (511)
T ss_pred ---hHHHHHHHHHHHHHHHHHHH-HhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHH
Confidence 23333444444344444433 4555333210 00 0 0 00000000 000 0001 1123344
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 011056 266 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 345 (494)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~ 345 (494)
.+..+| +.+....+...+...++.-...|....-. ++ .+.+. .|+-++. .+..+.+.+.++..|++-
T Consensus 256 ~~~y~n--~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~-~v---~~~~~-~yNG~ve------A~~tllga~~a~~ag~~~ 322 (511)
T TIGR00806 256 VTIYRN--PQLLLWSLWWVFNSAGYYLITYYVHTLWG-TL---DESLN-KYNGAVD------AASTLLGAITSFIAGFVN 322 (511)
T ss_pred HHHhcC--cchhhhhHHHHHHhhHHHHHHHHHHHHHH-Hc---CCCcc-ccCCHHH------HHHHHHHHHHHHHHHhhc
Confidence 444555 44444444444444444444444332221 11 11111 2433222 223444667777888875
Q ss_pred hhhcchHHHHH--HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccC
Q 011056 346 RKWGAGFIWGI--SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 423 (494)
Q Consensus 346 dr~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 423 (494)
.+..+--.+.+ ..++.+...+++...+ +.|...+..++++..+....++...-+++....
T Consensus 323 ~~w~~~~~l~l~v~s~~~~gll~~m~~t~-----------------~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~- 384 (511)
T TIGR00806 323 IRWARWSKLLIAVVSAIQAGLVFWMSQSH-----------------DIWVLYVTYVLFRGIYQFLVPIATFQIASSLSK- 384 (511)
T ss_pred CCchhhHHHHHHHHHHHHHHHhhhhhccc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 54433222322 2333333333333332 688899999999999998888888888888787
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhh
Q 011056 424 GLGQGLSLGVLNLAIVIPQIVVSMG 448 (494)
Q Consensus 424 ~~~~g~~~g~~~~~~~~g~~l~~~~ 448 (494)
+..|..+|+.++...+-|.+-..+
T Consensus 385 -~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 385 -ELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred -cceEEEEecHHHHHHHHHHheEEE
Confidence 788999999888777766665554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=166.62 Aligned_cols=302 Identities=14% Similarity=0.085 Sum_probs=177.9
Q ss_pred HHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 011056 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (494)
Q Consensus 46 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (494)
..+.....++.+.++++++..+.|++.+.+.++.+++.++.|++.| |+||||.+.+ +.++.+++.+++++++-+.
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~----r~~r~~~i~~-g~ll~~lg~ll~alphf~~ 122 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGT----KLHRPIVIGI-GCAIMGLGSFLLSLPHFLS 122 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhc----ccCcceEEEe-cHHHHHHHHHHHhChHHhc
Confidence 3445556788889999999999999999999999999999999999 9999885555 7777788888876653110
Q ss_pred cc-------------------cC--C--------------CC-C--C-cchHHHHHHHHHHhhcccc----ccccc---c
Q 011056 126 WL-------------------LG--D--------------RG-D--F-RPRAIAVFVFGFWILDVAN----NMTQG---K 159 (494)
Q Consensus 126 ~~-------------------~~--~--------------~~-~--~-~~~~~~~~~~~~~~~~~~~----~~~~~---~ 159 (494)
.- +- . .. . . .+..+++..+..++..... ..... +
T Consensus 123 ~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~ 202 (633)
T TIGR00805 123 GRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK 202 (633)
T ss_pred CCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC
Confidence 00 00 0 00 0 0 1112222333333221111 11111 5
Q ss_pred ccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhh--------hcccccccccchhHHHHHHHHHHHHHHHHHhhc
Q 011056 160 DHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT--------LTSACNVDCANLKSAFFLDVIFIAITTCISASA 231 (494)
Q Consensus 160 ~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 231 (494)
+++|+. ..++......+|..+|+++++++.-. ...|. .+..+....+.|+..|++.+++.++..++.+++
T Consensus 203 ~~~~~~-~~~i~~~~~~iG~~lG~llgg~l~~~-~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 203 SKNSPL-YIGILESIAVFGPAFGYLLGSFCLQI-YVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred ccccHH-HHHHHHHHHHhhhHHHHHHHHHHHhc-ccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 666776 99999999999999999998873210 01110 000011112247777888877776666554444
Q ss_pred ccCCCCCCCC-CCCCCCcc---c-cccch----hhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q 011056 232 AHEVPLGSHD-QSAPFSEE---G-HEQSS----DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMG 302 (494)
Q Consensus 232 ~~e~~~~~~~-~~~~~~~~---~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (494)
.++.|+...+ +.+..+.+ + .++.+ ...+...+..++.++| |.++...+..++.......+..|.|.|+.
T Consensus 281 p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n--~~f~~~~l~~~~~~~~~~~~~~~lP~yl~ 358 (633)
T TIGR00805 281 PKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCN--PIYMLVILAQVIDSLAFNGYITFLPKYLE 358 (633)
T ss_pred ccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322111 10000000 0 00000 0112233456667777 88888888888888888888899999995
Q ss_pred hhhcCCCCCCCccccccchhhHHHHHHHH-HHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHH
Q 011056 303 REIYGGEPNEGQNYATGVRMGALGLMLNS-VVLGITSVLMEKLCRKWG--AGFIWGISNILMALCFLA 367 (494)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~~ 367 (494)
+ .++.++.. .+.+ ..... .+.+++.++.|+++||++ .|+...++.++..++.+.
T Consensus 359 ~-~~g~s~~~---------ag~l-~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 359 N-QYGISSAE---------ANFL-IGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred H-HcCCcHHH---------HHHH-hhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 3 44433321 1112 22222 245788999999999997 456666666666555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-15 Score=134.95 Aligned_cols=342 Identities=18% Similarity=0.140 Sum_probs=212.3
Q ss_pred HHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCC-CcchhHHHHHHHHHHHHHHHhhccccccccCC----C
Q 011056 57 YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG-RRRPFIVCGAISIAVAVLLIGLSADIGWLLGD----R 131 (494)
Q Consensus 57 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~G-rr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 131 (494)
+..|++++....+.+.++..+... ..+.+|+.||+.++.+| ||.|+++.+.+....+.....++.-. +.. .
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~---l~~~~~~~ 81 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLL---LAESGQQS 81 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHH---Hccccccc
Confidence 357899999999999999888754 79999999994443333 88899998888877766655443111 110 0
Q ss_pred CCCcchHHHHHHHHHHhhccccccccc----------cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcc
Q 011056 132 GDFRPRAIAVFVFGFWILDVANNMTQG----------KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 201 (494)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~ 201 (494)
....+.+.....+.+...+.+.+..+. +|++|.+ +.++...+.-+|.+++..+.+... -++.
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~-~v~ivw~Mli~G~iv~ai~~g~lL----~~~s--- 153 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPR-VVAIVWVMLIVGIIVSAIVFGRLL----DPFS--- 153 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHc----cccC---
Confidence 122334444444444444444444333 7788887 999999999999999988866421 0110
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHH
Q 011056 202 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI 281 (494)
Q Consensus 202 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (494)
.......+...+++.++..++..+. .|++..+..+ ..+++ +.+....+.+...+ ++.++++.
T Consensus 154 -----~~rL~~v~~~~a~i~~~l~~ia~wg-~E~r~~~~~~-------~~~~~---~~~f~~a~~~~~~~--~~a~~f~~ 215 (403)
T PF03209_consen 154 -----PERLIQVIQGVALIALLLNLIALWG-QEPRRSRRAA-------AAERP---RPPFREAWRQVWAS--PQARRFFV 215 (403)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccccc-------CCCCC---CccHHHHHHHHHhC--CChhHHHH
Confidence 0012223333333333333333332 3333222211 00110 11222233333334 55555555
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHh-hhcchHHHHHHHHH
Q 011056 282 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR-KWGAGFIWGISNIL 360 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~g~~~~~~~~~~~ 360 (494)
..++...+++.--.-+-+|-. ++|+.++.++ +-.....+.+.+++-.+.+++.. |.++++...+++..
T Consensus 216 fl~l~t~a~~~QD~iLEPygg-~Vfgmsv~eT----------T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~ 284 (403)
T PF03209_consen 216 FLFLGTLAFFMQDVILEPYGG-EVFGMSVGET----------TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLL 284 (403)
T ss_pred HHHHHHHHHHhhHHHcCCchh-HHcCCCHHHH----------HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 555555444443333444443 4455444331 12233345566777777777766 67888888888888
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHH
Q 011056 361 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVI 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 440 (494)
.++++.++.... + ..+.+.+....+++|++.|.......+.+.+..++ ++.|..+|.+...+.+
T Consensus 285 ~~~~f~lii~a~-------------~-~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~--~~aG~~mG~WGaaQA~ 348 (403)
T PF03209_consen 285 GALAFALIILAG-------------P-LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSA--GRAGLFMGAWGAAQAI 348 (403)
T ss_pred HHHHHHHHHHHH-------------h-cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC--cchhHHHHHHHHHHHH
Confidence 888888877664 1 11467788888999999999988888888999888 8999999999999999
Q ss_pred HHHHHhhhhhhhhhh
Q 011056 441 PQIVVSMGSGPWDQL 455 (494)
Q Consensus 441 g~~l~~~~~g~l~~~ 455 (494)
+..++..++|.+.|.
T Consensus 349 A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 349 ARGLGTFLGGALRDL 363 (403)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999884
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-16 Score=155.83 Aligned_cols=358 Identities=14% Similarity=0.084 Sum_probs=214.5
Q ss_pred HHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcch
Q 011056 58 VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPR 137 (494)
Q Consensus 58 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (494)
.+.+..+.....+..+++.++..++..++|.++| |+|||++++. +.++.+++.+..++++|+.
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD----~~GRk~~~~~-~~~~~~i~~~~~a~a~~~~------------ 172 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSD----RFGRKPVLLV-SLLLFIIFGILTAFAPNYW------------ 172 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHh----hcccHHHHHH-HHHHHHHHHHHHHHhCcHH------------
Confidence 3557778888999999999999999999999999 9999887766 6666666778888999983
Q ss_pred HHHHHHHHHHhhccc----cccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccch
Q 011056 138 AIAVFVFGFWILDVA----NNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANL 210 (494)
Q Consensus 138 ~~~~~~~~~~~~~~~----~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 210 (494)
...+.+...++...+ ...... .++.|+. +..+ ......+..+++..+++. .+ +|
T Consensus 173 ~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~-~~~~-~~~~~~~~~~~~~~~a~~-----~~------------~W 233 (521)
T KOG0255|consen 173 MFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGL-ALTL-GGFFFVGGLMLPAGAAYI-----TR------------DW 233 (521)
T ss_pred HHHHHHHHHHhhccchhHHhHhhheeecCcchhhH-HHHH-HHHHHHHHHHHHHHHHHH-----Hh------------hH
Confidence 333333333332111 111111 7777776 7777 556666666666665542 21 79
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccc-----------ccchhhhhhH--H-----------HHHH
Q 011056 211 KSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH-----------EQSSDVHEAF--L-----------WELF 266 (494)
Q Consensus 211 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--~-----------~~~~ 266 (494)
|+.+++..+...+..+. ++..||+|++...+++.++..+. .+.++..... . ..+.
T Consensus 234 r~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (521)
T KOG0255|consen 234 RWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFL 312 (521)
T ss_pred HHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchh
Confidence 99999988777766555 56677999865444332211000 0000000000 0 0112
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 011056 267 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 346 (494)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d 346 (494)
..++. ++++...+...+.++.. ... |....+....++. .. .+.....+....+.....+...|
T Consensus 313 ~l~~~--~~l~~~~~~~~~~~~~~-~~~-y~gl~~~~~~lg~------------~~-~~~~~~~~~~~~p~~~~~~~~~~ 375 (521)
T KOG0255|consen 313 DLFRT--PRLRYRTLYLLFIWFVF-SLV-YYGLSLNVSGLGG------------NI-YLNFTLSGLVELPAYFRNGLLLP 375 (521)
T ss_pred hhhcC--HHHHHHHHHHHHHHHHH-hHH-HHhhhhhhhhcCc------------hH-HHHHHHHHHHHhhHHHHHHHHHH
Confidence 22233 32333333333333211 111 1111111111111 11 12222334467777777789999
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCC
Q 011056 347 KWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 426 (494)
Q Consensus 347 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 426 (494)
+.|||.....+..+..++++...+.. .....+...+...+..++.+......+....|..|+ ..
T Consensus 376 ~~gR~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt--~~ 439 (521)
T KOG0255|consen 376 EFGRRPPLFLSLFLAGIGLLLFGWLP--------------DDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT--VV 439 (521)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHhh--------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH--HH
Confidence 99999999999999999999888873 111111233333344444455555568889999999 88
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCCC
Q 011056 427 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 488 (494)
Q Consensus 427 ~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 488 (494)
|+.+.+..+....++.+++|.+.-..... . ....+.+.+....+.+.+...+.||++..
T Consensus 440 r~~~~~~~~~~~~~~~i~ap~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~lpet~~~ 498 (521)
T KOG0255|consen 440 RNTAVGAISAAARLGSILAPLFPLLLRQM-F--PLLGLILFGWLALLLGLLSLLLLPETKGK 498 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c--ccchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 99999999999999999999887544442 1 12223334556666666665667777654
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-15 Score=146.01 Aligned_cols=366 Identities=12% Similarity=0.108 Sum_probs=210.8
Q ss_pred HhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhc------cccc
Q 011056 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS------ADIG 125 (494)
Q Consensus 52 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~------~~~~ 125 (494)
.+.+.+.+++|+|..+++++.+++... .+++++.|+++| |+|||+.+++ +.++..++.++.+++ ++++
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~D----r~G~R~vlli-g~ll~~iG~ll~ala~~~~i~~s~~ 121 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYD----YLGPRPIFVL-SMTVFCLGTLLFALTFQEVIEGSVV 121 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHH----HhCcHHHHHH-HHHHHHHHHHHHHHHhcccccCcHH
Confidence 466778899999999999998875443 467778899999 9999887766 777777788887776 2331
Q ss_pred cccCCCCCCcchHHHHHHHHHHhhccccc-cccc-cccchhhHHhHHHHHHHHHHHHHHhhh-cccccccccchhhhccc
Q 011056 126 WLLGDRGDFRPRAIAVFVFGFWILDVANN-MTQG-KDHRRTRVANAYFSLFMAVGNILGYAT-GSFSGWFKILPFTLTSA 202 (494)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~r~~~~~~~~~~~~~~g~~~g~~~-g~~~~~~~~~~~~~~~~ 202 (494)
. ......+.+++.+....+.. .... .+++|+. +.|+...+.++|..+.+.+ .++ +.
T Consensus 122 ~--------l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~-a~Gi~~~~~gLGsaI~~~l~~~l------~~------ 180 (591)
T PTZ00207 122 R--------LSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGA-VVAIMKTFTGLGSAILGSIQLAF------FS------ 180 (591)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHH-HHHHHHHHHHHHHHHHHHHHHHH------HH------
Confidence 1 11111222222222211111 1111 4567776 9999999999999754433 322 11
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCC--CC-----CCCC-----------------C-----------
Q 011056 203 CNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH--DQ-----SAPF-----------------S----------- 247 (494)
Q Consensus 203 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~--~~-----~~~~-----------------~----------- 247 (494)
.+|+..|++.+++.++..++.+.+++++|.... ++ ++.. .
T Consensus 181 -----~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l 255 (591)
T PTZ00207 181 -----DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIIL 255 (591)
T ss_pred -----HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHH
Confidence 156667777776666666666555555442110 00 0000 0
Q ss_pred -----------------------------------c--------------c-cccc--------------chh-------
Q 011056 248 -----------------------------------E--------------E-GHEQ--------------SSD------- 256 (494)
Q Consensus 248 -----------------------------------~--------------~-~~~~--------------~~~------- 256 (494)
. + +++. ++.
T Consensus 256 ~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (591)
T PTZ00207 256 IVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDV 335 (591)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccc
Confidence 0 0 0000 000
Q ss_pred h-h-hhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHH
Q 011056 257 V-H-EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 334 (494)
Q Consensus 257 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (494)
+ . .+.-..+++.+++ .++|.+.+..++...+.........+ +.+..-+.... . +.......+.++.+
T Consensus 336 ~~~~P~~~~t~~q~l~~--~d~Wll~~~~~cg~g~gl~~~~N~~q-I~~sl~g~~~~------~--~~~~~~vsL~si~~ 404 (591)
T PTZ00207 336 DYIAPQFQETFIEGLKT--ARLWCLLWSIFCCVGAHFVIIFNARF-IYTALAGEAPD------D--ALNTLLTVLNGVGS 404 (591)
T ss_pred cCCCCCCcchHHHHHhc--hhHHHHHHHHHHhhCchheeeecHHH-HHHHhcCCCCC------c--cceeeehhhhhHHH
Confidence 0 0 0000145555666 77888888877776443333322222 22222111010 0 00111234456777
Q ss_pred HHHHHHHHHHH----hhhc----chHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 335 GITSVLMEKLC----RKWG----AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 335 ~i~~~~~g~l~----dr~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.+|.+..|.+. +|.. +|.+.+....++.++.+++.+.. | ...+.+..++.|+++|
T Consensus 405 ~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~-------------p----~~~L~~~~~lvg~~~G 467 (591)
T PTZ00207 405 AVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL-------------P----KAALPLPYFIAAFANG 467 (591)
T ss_pred HhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC-------------C----ccHhHHHHHHHHHHhh
Confidence 88888877766 2221 12233322233555555555542 2 1457788899999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHH-hhhhhhhhhhcC----C-------CCcchHHHHHHHHHHH
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVV-SMGSGPWDQLFG----G-------GNSPAFAVGGISALAG 474 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~-~~~~g~l~~~~g----~-------~~~~~~~~~~~~~~i~ 474 (494)
...++....++|++. ++.|+-+-+.....-+|..+- ..+.|.++|.-. . -+...|++.++++.++
T Consensus 468 ~~~~~~~~i~selFg---k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g 544 (591)
T PTZ00207 468 FMAATIALVTRTIFA---KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLA 544 (591)
T ss_pred HhHHHHHHHHHHHhc---cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHH
Confidence 999999999999999 577888888888888887775 678888887532 1 1234577777777777
Q ss_pred HHHHhh
Q 011056 475 GLIAIL 480 (494)
Q Consensus 475 ~~~~~~ 480 (494)
.+....
T Consensus 545 ~~~s~~ 550 (591)
T PTZ00207 545 FITSTY 550 (591)
T ss_pred HHHHhh
Confidence 766554
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=147.79 Aligned_cols=409 Identities=16% Similarity=0.090 Sum_probs=211.8
Q ss_pred CCCCHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHH--hCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCC-cch
Q 011056 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE--LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR-RRP 102 (494)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Gr-r~~ 102 (494)
++.+|+.+++.....+.....+++..+-.-+|.++ .+.+.+..|++.++..++.++.+|++|+++. |.|+ |||
T Consensus 29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~----k~~~~k~P 104 (488)
T KOG2325|consen 29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSN----KTGSVKKP 104 (488)
T ss_pred cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccc----ccCCcccC
Confidence 34455556555555555555555555556677877 7778889999999999999999999999999 7775 788
Q ss_pred hHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccc---cccc------cccchhhHHhHHHHH
Q 011056 103 FIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANN---MTQG------KDHRRTRVANAYFSL 173 (494)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~r~~~~~~~~~~ 173 (494)
++. +.+..+++.++....... ... ...+..++..+.+.+.. .... ..++|.| +++..+.
T Consensus 105 li~-s~ii~~~g~llY~~l~~~--------~~~--~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~r-A~a~~~~ 172 (488)
T KOG2325|consen 105 LIV-SFLIAIIGNLLYLALAYV--------PNG--VKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPR-AFAATSG 172 (488)
T ss_pred HHH-HHHHHHHHHHHHHHHHhc--------ccc--hHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHH-HHHHhhh
Confidence 877 666666676666222222 110 12223333333322211 1111 4566666 8888888
Q ss_pred HHHHHHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccccc
Q 011056 174 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 253 (494)
Q Consensus 174 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 253 (494)
+..+|.++||.++....-...-++. ...+..-+.+..+-++++++.++..++..+..+|.++...++..+.++++..+
T Consensus 173 ~~vlg~ilGp~~q~~f~~Lg~~G~~--i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~ 250 (488)
T KOG2325|consen 173 GFVLGIILGPTIQLAFTPLGEKGFM--ILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSD 250 (488)
T ss_pred HHHHHHHHhHHHHHHHhhhcCCceE--EcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccc
Confidence 8888888888887552100000000 00111122455666777777888878888888998776544322222111111
Q ss_pred chhhhhhHHHHHHHHhhhchHHHHHHHHHH-HHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHH
Q 011056 254 SSDVHEAFLWELFGTFRYFSGTIWIILIVT-ALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 332 (494)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (494)
+++.+.+.+ .+.....|+.. +...+......+-.+. +....|+....++ +..........++
T Consensus 251 ~~~~~~~~~----------d~~~~~vc~~~~~~~~~~~~~iet~~~~-~~m~~y~w~~~~a------v~~~gi~~~~~g~ 313 (488)
T KOG2325|consen 251 IEKVKKPKL----------DWVAVLVCIFLRFVVNFIATTIETLSSA-LTMVMYGWTGSEA------VLYNGITLSISGI 313 (488)
T ss_pred hhhhccCCh----------hHHHHHHHHHHHHHHHHHHHHHHhccch-HHHHHhccccchH------HHhhhhHHHHHHH
Confidence 000011100 01112222222 1222222221221111 1123343333221 1122222333333
Q ss_pred HHHHHHHHHHHHH-hhhcchHHHHHHHHHHHHHHHHHHHHHHhh-hhccccC-----------CC---CCCCchHHH-HH
Q 011056 333 VLGITSVLMEKLC-RKWGAGFIWGISNILMALCFLAMLILYYVA-IHMDYRG-----------HD---LPPNGIVIA-AL 395 (494)
Q Consensus 333 ~~~i~~~~~g~l~-dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~---~~~~~~~~~-~~ 395 (494)
..+...+...... .|+.+|+.+..+.++...+..+......+. .+.+... .+ .+. .+.+. .+
T Consensus 314 ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~-v~~~~~l~ 392 (488)
T KOG2325|consen 314 LSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTA-VPLILYLI 392 (488)
T ss_pred HHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcc-cChhhhee
Confidence 3333333333332 333445555555444433333322211000 0000000 00 000 01122 22
Q ss_pred HHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHH
Q 011056 396 IIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAG 474 (494)
Q Consensus 396 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~ 474 (494)
...+++|.+.........++.++...+ +++++..|+++.....+..++|.....+....| +.+.+.+.....++.
T Consensus 393 ~~i~~~g~~~P~~~~~~~tlySkiLgp--~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g--~~~v~~~~~~~~l~~ 467 (488)
T KOG2325|consen 393 SFIVVFGIAFPFISTALDTLYSKILGP--RDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG--PRPVWIILLCLLLVV 467 (488)
T ss_pred ehhheeccccccccchHHHHHHHHhCC--ccccceeEEEEeccchhhhhhHHHHhhhHHhcC--ccHHHHHHHHHHHHH
Confidence 334456666666666677888999998 999999999999999999999999999998887 555554444443333
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-15 Score=136.73 Aligned_cols=277 Identities=13% Similarity=0.072 Sum_probs=168.2
Q ss_pred HHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhc-ccccccccchhHHHH
Q 011056 140 AVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT-SACNVDCANLKSAFF 215 (494)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~ 215 (494)
.+.+.+..+.+...|.... +++++.+ .+++.+.++++|..+||.+++.+......+.... ...+....+|++.|+
T Consensus 18 f~~g~G~~~lq~~~n~~v~~~~~~~~~~~-~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl 96 (310)
T TIGR01272 18 FVLASGLTILQVAANPYVSILGPIETAAS-RLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYL 96 (310)
T ss_pred HHHHhhHHHHHhhHHHHHHHHCCcchHHH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHH
Confidence 4455555666777777665 5556665 8999999999999999999876311000000000 000001136888988
Q ss_pred HHHHHHHHHHHH-HhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 011056 216 LDVIFIAITTCI-SASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFL 294 (494)
Q Consensus 216 ~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (494)
+.+.+..+..++ .....||.++++.++ ..++ + .. +..+.+++ |.++...+..++.........
T Consensus 97 ~ia~~~~~~~i~~~~~~~p~~~~~~~~~-------~~~~-~---~~---~~~~~~~~--~~~~l~~~~~f~yvg~e~~~~ 160 (310)
T TIGR01272 97 LLAGALAVLAIIFAFLPLPELQEADVAR-------VSSG-D---TT---QKTSAFQF--THLVLGALGIFVYVGAEVSAG 160 (310)
T ss_pred HHHHHHHHHHHHHHHccCCCCCcccccc-------cccc-c---cc---chhhHHhh--HHHHHHHHHHHHHHHHHHHHH
Confidence 665554444333 333344432111100 0000 0 00 01123344 666665555555555667777
Q ss_pred hhchhhhhhh-hcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 011056 295 LFDTDWMGRE-IYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYY 373 (494)
Q Consensus 295 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~ 373 (494)
.|.+.|+.+. .++.++ .........+.....+++++.+++.||+|+|+.+..+..+..++.++....
T Consensus 161 ~w~~~yl~~~~~~g~s~----------~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-- 228 (310)
T TIGR01272 161 SFLVNFLSDPHALGLPE----------DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-- 228 (310)
T ss_pred HHHHHHHHhcccCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--
Confidence 8888888532 123222 222344555667788999999999999999998887777766665444333
Q ss_pred hhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhh
Q 011056 374 VAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD 453 (494)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~ 453 (494)
+ . ........+.|++.+..+|...+...+..|+ +.+++.++. ....+|.++.|.+.|.+.
T Consensus 229 ------------~---~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~---~~~~asai~-~~~~~Gg~i~P~l~G~la 288 (310)
T TIGR01272 229 ------------H---G-YVAMWFVLALGLFNSIMFPTIFSLALNALGR---HTSQGSGIL-CLAIVGGAIVPLLQGSLA 288 (310)
T ss_pred ------------C---C-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence 1 1 1223355578899999999988888888774 456667765 567799999999999999
Q ss_pred hhcCCCCcchHHHH
Q 011056 454 QLFGGGNSPAFAVG 467 (494)
Q Consensus 454 ~~~g~~~~~~~~~~ 467 (494)
|..| ...++.+.
T Consensus 289 d~~g--~~~a~~v~ 300 (310)
T TIGR01272 289 DCLG--IQLAFALP 300 (310)
T ss_pred Hhcc--chHHHHHH
Confidence 9877 55565543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=132.24 Aligned_cols=386 Identities=15% Similarity=0.079 Sum_probs=221.2
Q ss_pred HhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHH
Q 011056 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (494)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~ 117 (494)
+..+...+.|..+.+......+.+| +....-|...+|++.+......+-|+.| |+|-|...++ +....+++..+
T Consensus 52 lL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ld----k~GLR~a~ll-gt~ln~iGa~I 125 (480)
T KOG2563|consen 52 LLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILD----KFGLRTALLL-GTVLNGIGAWI 125 (480)
T ss_pred HHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhc----ccchHHHHHH-HHHHHHHHHHH
Confidence 3333333444333333333344567 7788889999999999999999999999 9999887777 44455555444
Q ss_pred Hhhcc-ccccccCCCCCCcchHHHHHHHHHHhhccccccccc----------cccchhhHHhHHHHHHHHHHHHHHhhhc
Q 011056 118 IGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG----------KDHRRTRVANAYFSLFMAVGNILGYATG 186 (494)
Q Consensus 118 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~~g~~~g~~~g 186 (494)
=..+. .. -.....+-+...|..+...+...... ++++|.. +...-.++..+|..+|.++.
T Consensus 126 r~iss~p~--------v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~-A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 126 RLISSLPF--------VPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAI-ATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred hhhccCcc--------ccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhh-hhhHHHhcchHHHHHHhhcc
Confidence 32322 11 01112223444444443333222222 7777776 77777777778888888776
Q ss_pred ccccccccchhhhcccccccccchhH--HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHH
Q 011056 187 SFSGWFKILPFTLTSACNVDCANLKS--AFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 264 (494)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (494)
.++ .|-.. ..+. ..|.. .|+....+..+.+.+..+..+++|+.+....+...+ ..+..+.
T Consensus 197 pil-----V~~~~--~~~~--~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------~~~f~~s 258 (480)
T KOG2563|consen 197 PIL-----VPSSK--DSED--NSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------DASFPKS 258 (480)
T ss_pred cee-----cCCCC--Ccch--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------cCcHHHH
Confidence 652 22110 0111 12332 355444444444445555556655544332111110 2235677
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011056 265 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 344 (494)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l 344 (494)
+++.+++ +++..+.+.+.+....++...+.+...+... +|+- ...|..+. ...+.+++++.+.|.+
T Consensus 259 i~~~~~n--~~F~il~~~ygi~~g~F~~l~~~l~~~l~~s----------gY~~-~~aG~ig~-l~iv~Gmlga~~~gii 324 (480)
T KOG2563|consen 259 IKSCFKN--RQFIILAICYGIGLGLFNSLSTLLNLALCPS----------GYEG-VFAGYIGA-LMIVAGMLGALASGII 324 (480)
T ss_pred HHHHHcC--ccHHHHHHHHhhhHHHHHHHHHHhhhccccc----------cCCc-cccchhHH-HHHHHHHHHHHHHHhh
Confidence 8888888 8888877777666655555544333233211 2211 11222333 3456688999999999
Q ss_pred HhhhcchHHH-HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccC
Q 011056 345 CRKWGAGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 423 (494)
Q Consensus 345 ~dr~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 423 (494)
.||.+.-+.. .+......++...+.... ......+.......++|++.....|+-.-+..|..-+
T Consensus 325 ~Dktk~fk~~~~v~~~~~~v~~~~l~~~t-------------~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP- 390 (480)
T KOG2563|consen 325 ADKTKKFKLTTLVLYLFALVGTLMLLTCT-------------LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYP- 390 (480)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhh-------------ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccc-
Confidence 9998765544 333333333322222221 1111234455566677777777888888888887666
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC--CCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 424 GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG--GGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 424 ~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g--~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
...|+..|+.+...++-+.+-..+.+...+..+ ++....-+.....+++++++..++++..
T Consensus 391 -v~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y 453 (480)
T KOG2563|consen 391 -VAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY 453 (480)
T ss_pred -cCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence 777888999998888888888888887777554 1123334455555666666666665543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-13 Score=125.54 Aligned_cols=408 Identities=16% Similarity=0.138 Sum_probs=225.8
Q ss_pred HHHHHHHHhhhHHHHH-HHHHHHhHHHHHHHhC----CCchhHHHHHHHHHHHhhhhccccceecccccCC-CCCcchhH
Q 011056 31 RKLLKVASVAGGIQFG-WALQLSLLTPYVQELG----IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFI 104 (494)
Q Consensus 31 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g----~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r-~Grr~~~l 104 (494)
|.++.+...-+.==|+ |++...+..+...+++ +|++++.-+.+.+...-.+...++|+++| | +|+||.++
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laD----r~LG~~~tI~ 96 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLAD----RVLGTRRTIV 96 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHH----HhcchhHHHH
Confidence 3444444443433343 4444434444445555 99999999999999888899999999999 6 79999887
Q ss_pred HHHHHHHHHHHHHHhhcc--ccccccCCCCCCcchHHHHHHHHHHhhccccccccc----cccchhhHHhHHHHHHHHHH
Q 011056 105 VCGAISIAVAVLLIGLSA--DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG----KDHRRTRVANAYFSLFMAVG 178 (494)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~~g 178 (494)
+ +.++..++.+..+.++ +. ......+.+..++.+.+-.......+ +++.|....++++.++.++|
T Consensus 97 l-Gail~~iGh~~L~~~~~~~~--------~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiG 167 (498)
T COG3104 97 L-GAILMAIGHLVLAISSVSGP--------GGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIG 167 (498)
T ss_pred H-HHHHHHHHHHHHhccccccc--------cHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehH
Confidence 7 6667777888886664 22 22234444555555555443333333 22222333888899999999
Q ss_pred HHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhccc---CCCCCCCCCCCCCCccccc---
Q 011056 179 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH---EVPLGSHDQSAPFSEEGHE--- 252 (494)
Q Consensus 179 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~---e~~~~~~~~~~~~~~~~~~--- 252 (494)
..++|.+.+++. . ..+|...|.+.++-..+..+..+...+ +.+..++............
T Consensus 168 sl~~p~i~~~~~---------~------~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (498)
T COG3104 168 SLIAPIITGLLA---------I------NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGG 232 (498)
T ss_pred HHHHHHHHHHHH---------H------hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHH
Confidence 999999866521 1 016888898887766665554433221 1111111110000000000
Q ss_pred -------cc--hhhhhh----------------HHHHHHHHhh--hchHHHHHHHHHHHH---HHHHHHHHHhhchhhhh
Q 011056 253 -------QS--SDVHEA----------------FLWELFGTFR--YFSGTIWIILIVTAL---TWLGWFPFLLFDTDWMG 302 (494)
Q Consensus 253 -------~~--~~~~~~----------------~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 302 (494)
.. ...... .+.+..+.-+ +-+++.+..+..... .|..+.-..+-+..|..
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~ 312 (498)
T COG3104 233 LVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYAD 312 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 00 000000 0000111001 112333333322222 22211111111222222
Q ss_pred hhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcch-------HHHHHHHHHHHHHHHHHHHHHHhh
Q 011056 303 REIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG-------FIWGISNILMALCFLAMLILYYVA 375 (494)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 375 (494)
+.+-+. -.+++.. . .+.-.++.+.-++.+++..++..|.+++ .-+.++..+++.+++++.......
T Consensus 313 ~~v~~~----~~g~~vp--~-~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~ 385 (498)
T COG3104 313 RNVNRQ----IFGFEVP--P-AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWF 385 (498)
T ss_pred Hhhccc----ccceecC--H-HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111100 0011111 1 1234455666677777777777774332 224677888888888777663211
Q ss_pred hhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhh--
Q 011056 376 IHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD-- 453 (494)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~-- 453 (494)
.+. +...+.+..+...++.+++.-...++..+++....|+ +-.+..++++-.....++.++..+++.-.
T Consensus 386 ~~~-------~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~--~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~ 456 (498)
T COG3104 386 GGP-------SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP--ALKSFIMAMWFLTVAAGQTLGGQVAGLTAVT 456 (498)
T ss_pred cCC-------CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHhhceeccccccc
Confidence 110 1123577888889999999999999999999999999 88999999999999999999888887422
Q ss_pred ----hhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 454 ----QLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 454 ----~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
+... ....|...+...++..+..+...|+
T Consensus 457 ~~~~~~~~--~~~~F~~~g~v~i~~~~~~~~~~~~ 489 (498)
T COG3104 457 DPAYTAFI--EGRVFGTIGVVAIVIGILLLLLSPK 489 (498)
T ss_pred chhhhhhh--hhhhHHHHHHHHHHHHHHHHHhhHH
Confidence 2211 3345666666666665555544443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-12 Score=123.49 Aligned_cols=364 Identities=17% Similarity=0.179 Sum_probs=196.6
Q ss_pred HhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCC-CcchhHHHHHHHHHHHHHHHhhccccccccCC
Q 011056 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG-RRRPFIVCGAISIAVAVLLIGLSADIGWLLGD 130 (494)
Q Consensus 52 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~G-rr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (494)
...+.+.+++|+++++.....++..+. ....|+.|.++|.+.- +| |||++++.+.++..++...++..++.....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi-~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~-- 86 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPI-FGYRRKPYMIIGWLLGAVSALVLALLPASESSA-- 86 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccc-cCCcchHHHHHHHHHHHHHHHHHHhcccccchh--
Confidence 345566688999999999887777776 3568899999995442 24 788888878777765555554544321000
Q ss_pred CCCCcchHHHHHHHHHHhhccccccccc-----cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccc
Q 011056 131 RGDFRPRAIAVFVFGFWILDVANNMTQG-----KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNV 205 (494)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~ 205 (494)
......+.+..++....++....... .++++++ ..+.......+|.+++..++|.....
T Consensus 87 --~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~-lqS~~~~~~~~G~lv~~~l~G~l~~~------------- 150 (433)
T PF03092_consen 87 --AIAVVLLFLASFGYAFADVAADALVVELARREPESRGD-LQSFVWGVRSVGSLVGSLLSGPLLDS------------- 150 (433)
T ss_pred --hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHH-HHHHHHHHHHHHHHHHHHhhhhhhhc-------------
Confidence 11112223333444444555555444 3333555 77777888888999988887763110
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHH-HHH
Q 011056 206 DCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI-VTA 284 (494)
Q Consensus 206 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 284 (494)
.+.++.|.+.+++..+..+..++..+|++..+..+.....+++.+......+...++.++.+++ +..+...+ ..+
T Consensus 151 --~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~i~~~~~~~~~ 226 (433)
T PF03092_consen 151 --FGPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQ--RAIWQPILFFIF 226 (433)
T ss_pred --CCCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhh--hHHHHHHHHHHH
Confidence 1456777777777666666666666663222211100000010011111123445566666666 66665544 222
Q ss_pred HHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Q 011056 285 LTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALC 364 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 364 (494)
+.......... ...|...+..+ ..+++.. ..+.+. .+..++.+++..+..+...+..-|+++....++..+.
T Consensus 227 ~~~~~~~~~~a-~~fy~~~~~~~-----gp~fs~~-f~~~~~-~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~ 298 (433)
T PF03092_consen 227 FFNLPPSISSA-SSFYFQTDALG-----GPHFSPS-FYGTLS-IVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLA 298 (433)
T ss_pred HHHhccCCCCc-cEEEEEecccc-----ccccCHH-HHHHHH-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 21111000000 00011111111 0011111 112222 4456666777777777766777777776666554433
Q ss_pred HHHHHH-HHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHH
Q 011056 365 FLAMLI-LYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQI 443 (494)
Q Consensus 365 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 443 (494)
.+.-.. .... | ...++|+. +..+.-.++..+.....+-....++++.+|+ ...|+.+++.....++|..
T Consensus 299 ~l~~~~lv~~~--n---~~~Gi~d~---~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~--G~Egt~yall~s~~Nlg~~ 368 (433)
T PF03092_consen 299 SLFDLLLVTRW--N---LDLGIPDQ---WFALGDTILEEVIGMIAFMPSLVLAARLCPK--GSEGTVYALLASFSNLGSS 368 (433)
T ss_pred hcccEEEEEEE--e---eeeCcCCe---EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHHH
Confidence 332111 1000 0 00112331 2222233334444444444445778999999 8999999999999999999
Q ss_pred HHhhhhhhhhhhcC
Q 011056 444 VVSMGSGPWDQLFG 457 (494)
Q Consensus 444 l~~~~~g~l~~~~g 457 (494)
++..++..+.+.++
T Consensus 369 ~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 369 VSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999888776
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=124.52 Aligned_cols=178 Identities=13% Similarity=0.062 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
|+++.+.+..++...+......+.+.++.++ ++.+. ....+......+..++.+++.|+++||+|||++
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~-~g~s~----------~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~ 75 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQ-YSLSV----------DLIGYAMTIALTIGVVFSLGFGILADKFDKKRY 75 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Confidence 6677777778888888778788888888643 23222 112233444566788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
+..+.++..++.+.+.+.+ +.+..++...+.+.+.+...+...++..|..|+ ++|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 136 (395)
T PRK10054 76 MLLAITAFASGFIAIPLVN-----------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS--TSKTKIFSL 136 (395)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--hHHHHHHHH
Confidence 9888888888877776663 344455555566666666667778888999988 889999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+....+|..++|.+++.+.+ .+ +...|.+.+++.+++.+...+..++
T Consensus 137 ~~~~~~lg~~igp~l~~~l~~-~g--~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 137 NYTMLNIGWTVGPPLGTLLVM-QS--INLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hc--cCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998875 44 6667777777766665554443333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-15 Score=144.84 Aligned_cols=391 Identities=15% Similarity=0.135 Sum_probs=1.6
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
...+.....++.+.+.++++.++.|++.+.+-++..+..++..++.+ |. +|..++..+.++++++.+++++.+-.
T Consensus 17 ~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~----~~-hrprwig~g~~~~~~g~~l~~lPhf~ 91 (539)
T PF03137_consen 17 MVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGG----RG-HRPRWIGIGALLMGLGSLLFALPHFL 91 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----hc-CCcceeeecHHHHHHHHHHHhccHhh
Confidence 34444455778888999999999999999999999999999999999 74 55778888999999999888664321
Q ss_pred ccccC-----------------C-----------------C-CCCcchHHHHHHHHHHhhccccccccc------cc---
Q 011056 125 GWLLG-----------------D-----------------R-GDFRPRAIAVFVFGFWILDVANNMTQG------KD--- 160 (494)
Q Consensus 125 ~~~~~-----------------~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 160 (494)
..-+. . . .........++.++..+.+.+.....+ +|
T Consensus 92 ~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~ 171 (539)
T PF03137_consen 92 SGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS 171 (539)
T ss_dssp ------------------------------------------------------------SSS-----------------
T ss_pred cCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc
Confidence 11110 0 0 011112234445555555555444444 22
Q ss_pred cchhhHHhHHHHHHHHHHHHHHhhhcccccccccchh--------hhcccccccccchhHHHHHHHHHHHHHHHHHhhcc
Q 011056 161 HRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF--------TLTSACNVDCANLKSAFFLDVIFIAITTCISASAA 232 (494)
Q Consensus 161 ~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 232 (494)
++......|+......+|.++|.++|+...-. ...+ ..+..+..+.+.|+..|++.+.+.++..+..+.+.
T Consensus 172 ~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~-yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP 250 (539)
T PF03137_consen 172 KKNSPLYIGILYAMSILGPALGFLLGSFCLRI-YVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP 250 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCccchhhhhHHhhccHHHHHHHHHHHHhc-eeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222467888888899999999998862110 0111 11122333345688888888888887777776665
Q ss_pred cCCCCCCCC----CCCCCC-ccc--cccch--------hhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011056 233 HEVPLGSHD----QSAPFS-EEG--HEQSS--------DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFD 297 (494)
Q Consensus 233 ~e~~~~~~~----~~~~~~-~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (494)
|+-|...+. +.+..+ +++ ++.++ +..+...+.+++.++| +.+....+..........++.+|.
T Consensus 251 k~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~N--p~f~~~~la~~~~~~~~~G~~tF~ 328 (539)
T PF03137_consen 251 KKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTN--PVFMCLILAGVFESFIVSGFATFL 328 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544111 000000 000 00000 1122334455566667 777777777777778888889999
Q ss_pred hhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHHHHH---HHHH-
Q 011056 298 TDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG--AGFIWGISNILMALCFLA---MLIL- 371 (494)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~~---~~~~- 371 (494)
|.|++ ..|+.++..+.. +.-.+.-.+..+|.+++|++.+|++ .|+......+...++.+. ..+.
T Consensus 329 pKylE-~QF~~sas~A~~---------l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~ 398 (539)
T PF03137_consen 329 PKYLE-SQFGLSASQASL---------LTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLG 398 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-HHhCCCHHHHHH---------HHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeec
Confidence 99996 446655443211 1111223346788889999999984 344443333333333332 1111
Q ss_pred ---HHhhh-hccc-----cCC-C-----------------CC----CC--chHHHHHHHHHHHhhHhhhhhhchhhhHhh
Q 011056 372 ---YYVAI-HMDY-----RGH-D-----------------LP----PN--GIVIAALIIFTILGGPLAITYSVPYALVSI 418 (494)
Q Consensus 372 ---~~~~~-~~~~-----~~~-~-----------------~~----~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 418 (494)
...+. +..+ ... . .+ .. .....+++..++..+..+.........+-+
T Consensus 399 C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR 478 (539)
T PF03137_consen 399 CPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLR 478 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeec
Confidence 00000 0000 000 0 00 00 012223333333333333333344455567
Q ss_pred hcccCCCCcchhhhHHHHHH-HHHHHHHhhhhhhhhhh
Q 011056 419 RTESLGLGQGLSLGVLNLAI-VIPQIVVSMGSGPWDQL 455 (494)
Q Consensus 419 ~~~~~~~~~g~~~g~~~~~~-~~g~~l~~~~~g~l~~~ 455 (494)
.+|+ ++|+.+.|+..... -+|.+-+|++.|.++|.
T Consensus 479 ~V~~--~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 479 CVPP--EQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------
T ss_pred cCCh--hhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 7888 99999999987654 45667799999999986
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.6e-12 Score=122.64 Aligned_cols=176 Identities=10% Similarity=0.073 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh-hcch
Q 011056 273 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAG 351 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~~ 351 (494)
||.++.++...+...++++....+...|+.++ ++.+.. ........+.....+..++.|+++|| +|||
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-lg~~~~----------~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r 81 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQ-LGFSQE----------QAFITFGAFAALVYGLISIGGYVGDHLLGTK 81 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH----------HHHHHHHHHHHHHHHHHhhHHHhhhhccchH
Confidence 47777777777777788888888888888654 222211 11222333344455666789999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhh
Q 011056 352 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 431 (494)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 431 (494)
|++..+.++..++.+...+.. . ....+++...+.+++.+...+...+++.|.+|+++++++.++
T Consensus 82 ~~~~~g~~~~~~g~~~~~~~~--------------~--~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~ 145 (489)
T PRK10207 82 RTIVLGAIVLAIGYFMTGMSL--------------L--KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAF 145 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------c--chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcch
Confidence 999999999999888777652 1 122344566777888888888889999999988444668889
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHH
Q 011056 432 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLI 477 (494)
Q Consensus 432 g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~ 477 (494)
++++...++|..++|.++|++.+..| +...|++.++..+++.+.
T Consensus 146 ~~~~~~~nig~~~g~~l~g~l~~~~g--w~~~F~i~~i~~~~~~~~ 189 (489)
T PRK10207 146 TLFYMSINIGSLISLSLAPVIADKFG--YSVTYNLCGAGLIIALLV 189 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 667787765544444433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.9e-12 Score=122.12 Aligned_cols=179 Identities=9% Similarity=0.107 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhh-hcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh-hcc
Q 011056 273 SGTIWIILIVTALTWLGWFPFLLFDTDWMGRE-IYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGA 350 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~ 350 (494)
|+.++.++...++..++++....+++.|+.++ .++.+. ...........+...+++++.|+++|| +||
T Consensus 9 p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~----------~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~ 78 (475)
T TIGR00924 9 PKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQ----------EQAFIIFGAYSALVYLLTSVGWWFGDRVWGT 78 (475)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCH----------HHHHHHHHHHHHHHHHHHhhHHHHHHhhcch
Confidence 46677777777777788888888888888543 022111 122233455677789999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCC-CCcch
Q 011056 351 GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG-LGQGL 429 (494)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 429 (494)
|+++..+.++.+++.+++.+.. +.+.+.+...+.|++.+...+...+++++.+|+++ ++|++
T Consensus 79 ~~~l~~~~~~~~~g~~~~~~~~-----------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~ 141 (475)
T TIGR00924 79 KKTMVLGGIVLMLGHFMLAMSI-----------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDG 141 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-----------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccc
Confidence 9999999999988888776652 24455566677888888888888899999998732 35888
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 430 SLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 430 ~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
+.++.+...++|..+||.+.+.+.+..| +...|.+.++..+++.+....
T Consensus 142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g--~~~~f~~~~~~~~~~~l~~~~ 190 (475)
T TIGR00924 142 GFTLFYMSINIGSFISPLLAGVIAENYG--YHVGFNLAAVGMVIGLLTFFA 190 (475)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 677777776655555444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.9e-12 Score=119.52 Aligned_cols=175 Identities=14% Similarity=0.101 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 011056 277 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI 356 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~ 356 (494)
+.+....++...+.+....+.+.++.++. +.++ ....+......+...+.+++.|+++||+|||+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~----------~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~ 81 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQL-GWAA----------VMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVT 81 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcH----------HHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHH
Confidence 34456666677777777777777775432 2111 111233334456667778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHH
Q 011056 357 SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNL 436 (494)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 436 (494)
+..+.+++++.....+ +.+.+.+...+.|++.+...+...+++.|.+|+ +++++++|+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~ 142 (400)
T PRK11646 82 GMLMRAAGFATMAIAH-----------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP--HQRGRFFSLLMM 142 (400)
T ss_pred HHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHH
Confidence 9999988888776652 356667777788888877777778889999998 899999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 437 AIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 437 ~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
...+|..+||.++|.+. ..| +...|.+.++..++..++..+..|+
T Consensus 143 ~~~~g~~ig~~l~g~l~-~~g--~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 143 QDSAGAVIGALLGSWLL-QYD--FRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHH-Hhh--HHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999998 445 5667777766666655554444444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-11 Score=118.84 Aligned_cols=133 Identities=14% Similarity=0.142 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++..+++++.|++.||+|||+++.++.++.+++.++..+.. +.+.+.+..++.|++.+
T Consensus 64 ~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~~g 126 (434)
T PRK11663 64 ATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS-----------------SLWAFALLWVLNAFFQG 126 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHH
Confidence 4456777889999999999999999999999999888888776663 45666666677788888
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
...+....++.+.+|+ ++||+++|+.+....+|..++|.+.+.+.+..| +...|.+.+++.++..+...+
T Consensus 127 ~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--w~~~f~~~~i~~~~~~~~~~~ 196 (434)
T PRK11663 127 WGWPVCAKLLTAWYSR--TERGGWWAIWNTAHNVGGALIPLVVGAIALHYG--WRYGMMIAGIIAIVVGLFLCW 196 (434)
T ss_pred ccchHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 7777888899999998 899999999999999999999999999998876 667777766655544443333
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-11 Score=116.01 Aligned_cols=179 Identities=11% Similarity=0.101 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh-cch
Q 011056 273 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAG 351 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~~ 351 (494)
|+.++..+...+...++++.+..+.+.|+.++ ++.++ . ........+.....++.+++|+++||+ |||
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-lgls~--------~--~a~~i~~~~~~~~~l~~ligG~LaDRilGrr 76 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-LKYDD--------N--HAYELFSAYCSLVYVTPILGGFLADKVLGNR 76 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH--------H--HHHHHHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence 36677777777777777788888888888643 22222 1 122334445566788899999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhh
Q 011056 352 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 431 (494)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 431 (494)
|.+.++.++.+++.+++.... . ......+...+..++.+...+...+++.|.+|+++++|+++.
T Consensus 77 r~iliG~il~~lg~lll~~~~--------------~--~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf 140 (493)
T PRK15462 77 MAVMLGALLMAIGHVVLGASE--------------I--HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGF 140 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------c--chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccccee
Confidence 999999998888876554321 0 112233333444556666666677889999997444788899
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 432 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 432 g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
++......+|..++|.+.|++.+..| +...|.+.++..+++.+..+.
T Consensus 141 ~i~Y~~~nlG~~iap~l~g~L~~~~G--w~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 141 SLMYAAGNVGSIIAPIACGYAQEEYS--WAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhC--hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877 677787776666655554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=117.20 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++..++.++.|++.||+|||+.+..+.++..++.+.....+ +.+...+..++.|++
T Consensus 44 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~ 106 (385)
T TIGR00710 44 MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN-----------------NIETLLVLRFVQAFG 106 (385)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----------------cHHHHHHHHHHHHcc
Confidence 334456677889999999999999999999999888888888776653 456677778888999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+...+...+++.|.+|+ ++|++..|+.+....++..++|.+++.+.+..+ +...+.+.+++.++..+..++..||
T Consensus 107 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (385)
T TIGR00710 107 ASAGSVISQALVRDIYPG--EELSRIYSILMPVLALAPAVAPLLGGYILVWLS--WHAIFAFLSLAGILLSALIFFILPE 182 (385)
T ss_pred hhHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 988888889999999998 899999999999999999999999999988766 6667777777666666665555555
Q ss_pred CCC
Q 011056 485 SSA 487 (494)
Q Consensus 485 ~~~ 487 (494)
+++
T Consensus 183 ~~~ 185 (385)
T TIGR00710 183 TLP 185 (385)
T ss_pred CCC
Confidence 443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.8e-11 Score=114.66 Aligned_cols=136 Identities=20% Similarity=0.163 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHh
Q 011056 326 GLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL 405 (494)
Q Consensus 326 ~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 405 (494)
......+...+++++.|++.||+|||+.+..+.++.+++.++..+.. +.+.+++..++.|++.
T Consensus 37 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~ 99 (352)
T PF07690_consen 37 LFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS-----------------NFWLLLIARFLLGIGS 99 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh-----------------hHHHHhhhcccccccc
Confidence 34446777899999999999999999999999999888855544431 3457888888999999
Q ss_pred hhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcc
Q 011056 406 AITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 482 (494)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (494)
+...+...+++.|.+|+ ++|++++++.+....+|..++|.+++.+.+..+ +...|.+.+++.++..++...+.
T Consensus 100 ~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~--~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 100 GFFSPASNALIADWFPP--EERGRAFGILSAGFSLGSILGPLLGGFLISYFG--WRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp HHHHHHHHHHHHHCCCT--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH--HCCHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccccccccccchh--hhhhhccccccchhhhhhhcccchhhhhhhccc--cccccccccchhhhhhhhHhhhh
Confidence 99999999999999998 899999999999999999999999999998766 66778888888888776533333
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-11 Score=118.87 Aligned_cols=179 Identities=12% Similarity=0.025 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
+.++.++...++.......+....+.+.. + ++.++. ...+......+...++.++.|++.||+|||++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-~g~s~~----------~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 77 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQ-S-LGESPL----------HMHMVIVSYVLTVAVMLPASGWLADRVGVRNI 77 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-H-hCcCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 55666666666666666666666666664 2 332221 11122344566678889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
+..+..+.+++.+...+.. +.+.+++...+.|++.+...+...+.+.|.+|+ ++++++.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 138 (471)
T PRK10504 78 FFTAIVLFTLGSLFCALSG-----------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR--EQYMAAMTF 138 (471)
T ss_pred HHHHHHHHHHHHHHHHHhC-----------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 9888888777776655442 356677778899999998888888999999998 889999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
.+....++..++|.++|.+.+..| +...|.+...+..++.+......|+.
T Consensus 139 ~~~~~~~g~~~g~~~~g~l~~~~g--w~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 139 VTLPGQVGPLLGPALGGLLVEYAS--WHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999998866 66677777666666666555544443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-11 Score=114.64 Aligned_cols=179 Identities=9% Similarity=-0.024 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
+.++.++...+.............+.+.. + ++.+.. ...+......++..+++++.|++.||+|||++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~g~s~~----------~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~ 70 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELAH-D-VGISIP----------AAGHMISYYALGVVVGAPIIALFSSRYSLKHI 70 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHHH-H-cCCCHH----------HHhHHHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 55566666666665555555555555442 2 332221 12233455677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
+..+..+.+++.++..+.+ +.+.+++..++.|++.+...+.....+.|..|+ +++++++++
T Consensus 71 ~~~~~~~~~~~~~l~~~~~-----------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 131 (382)
T PRK10091 71 LLFLVALCVIGNAMFTLSS-----------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP--GKVTAAVAG 131 (382)
T ss_pred HHHHHHHHHHHHHHHHHhC-----------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh--HHhhHHHHH
Confidence 9999999888888776663 467777888899998888777777888888887 889999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
......++..++|.+++.+.+..+ +...|.+.++..++..+...+..|+.
T Consensus 132 ~~~~~~~g~~~g~~l~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 132 MVSGMTVANLLGIPLGTYLSQEFS--WRYTFLLIAVFNIAVLASIYFWVPDI 181 (382)
T ss_pred HHHHHHHHHHHhccHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999888766 66777777776666655555545554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-11 Score=114.35 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....+...+++++.|++.||+|||+.+..+.++.+++.++..+.. +.+.+++...+.|++.+
T Consensus 61 ~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~r~l~G~~~g 123 (394)
T PRK10213 61 VTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN-----------------SFSLLLIGRACLGLALG 123 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC-----------------hHHHHHHHHHHHHHhhH
Confidence 3445677888999999999999999999999999988877766652 46778888889999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
...+...+++.|.+|+ ++++++.++......++..++|.+++.+.+..| +...|.+.+++.++..+......||.
T Consensus 124 ~~~~~~~~~i~~~~~~--~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g--w~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 124 GFWAMSASLTMRLVPP--RTVPKALSVIFGAVSIALVIAAPLGSFLGELIG--WRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHHHcCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9888899999999998 899999999999999999999999999998876 66677776666555544444334543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-11 Score=114.42 Aligned_cols=141 Identities=11% Similarity=0.003 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......+...+++++.|+++||+|||+++..+..+..++.++..+.... + ..+.+.+++...+.|++
T Consensus 38 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~l~g~~ 105 (365)
T TIGR00900 38 LAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL-----------G-GLNIWQVYVLAGILAIA 105 (365)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc-----------C-CCcHHHHHHHHHHHHHH
Confidence 33445677788999999999999999999998888877777666555210 0 01356677778888999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
.+...+...+++.|..|+ ++|++.+|+.+....+|..++|.+++.+.+..| +...+.+.++..+++.+.....
T Consensus 106 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 106 QAFFTPAYQAMLPDLVPE--EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG--IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHHHHHHHHHHHhcCCH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhc
Confidence 998888889999999998 899999999999999999999999999998876 5666766666555555444433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.8e-11 Score=113.26 Aligned_cols=138 Identities=16% Similarity=0.068 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
...+.+...+++++.|++.||+|||+++..+..+..++.+...+.+ +.+.+++...+.|++.+
T Consensus 50 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~r~~~G~~~~ 112 (390)
T PRK03545 50 LTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW-----------------NFTVLLISRIGIAFAHA 112 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHH
Confidence 3345666778888999999999999999999998888888777663 46677777778888888
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
...+...+++.|..|+ ++|++++|+.+....++..++|.+++.+.+..| +...|.+.+++.++..+......|+.
T Consensus 113 ~~~~~~~~~i~~~~~~--~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g--w~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 113 IFWSITASLAIRVAPA--GKKAQALSLLATGTALAMVLGLPLGRVIGQYLG--WRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHHhCCh--hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7778888999999998 899999999999999999999999999988876 67778877777766655555444443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-11 Score=113.79 Aligned_cols=141 Identities=12% Similarity=-0.012 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++..+++++.|++.||+|||+++..+.++.+++.++..+.+ +.+.+++.-.+.|++.+
T Consensus 49 ~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~r~l~G~~~~ 111 (412)
T TIGR02332 49 ATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT-----------------GPESLYLLRILVGIAEA 111 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-----------------CHHHHHHHHHHHHHHHh
Confidence 4446677888999999999999999999999999888888877763 46677778889999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc----CCCCcchHHHHHHHHHHHHHHHhhcc
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF----GGGNSPAFAVGGISALAGGLIAILAI 482 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~----g~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (494)
...+....++.|.+|+ ++||+++|+++....+|..+++.+++.+.+.. ..++...|.+.++..++.+++.+++.
T Consensus 112 ~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~ 189 (412)
T TIGR02332 112 GFLPGILLYLTFWFPA--YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWL 189 (412)
T ss_pred hHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 8888888889999998 89999999999999999999999999887531 01367778877777666665555555
Q ss_pred cCCC
Q 011056 483 PRSS 486 (494)
Q Consensus 483 ~~~~ 486 (494)
||++
T Consensus 190 ~~~p 193 (412)
T TIGR02332 190 DDSP 193 (412)
T ss_pred CCCc
Confidence 5544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-10 Score=113.81 Aligned_cols=313 Identities=13% Similarity=0.124 Sum_probs=194.3
Q ss_pred HHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHH
Q 011056 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (494)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~ 114 (494)
+++...+...+..+.....+..+-+.++++.++.|++.+.+-++..+...++.+..- |..| ..++..+.++++++
T Consensus 101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~----r~Hr-Pr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGS----RGHR-PRWIGIGLVLMGLG 175 (735)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcc----ccCc-cceeeechhHHHHH
Confidence 344444444455555556777788899999999999999999999999999999988 7654 55777788888888
Q ss_pred HHHHhhcccc-----------------c-------------cccCCC-------CCCcchHHHHHHHHHHhhcccccccc
Q 011056 115 VLLIGLSADI-----------------G-------------WLLGDR-------GDFRPRAIAVFVFGFWILDVANNMTQ 157 (494)
Q Consensus 115 ~~~~~~~~~~-----------------~-------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
.++.++.+-+ . ...... ........+++.++..+.+++.+...
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 8888664210 0 000000 01112233444555555555555554
Q ss_pred c---------cccchhhHHhHHHHHHHHHHHHHHhhhccccc-ccc---cchhhhcccccccccchhHHHHHHHHHHHHH
Q 011056 158 G---------KDHRRTRVANAYFSLFMAVGNILGYATGSFSG-WFK---ILPFTLTSACNVDCANLKSAFFLDVIFIAIT 224 (494)
Q Consensus 158 ~---------~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~-~~~---~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 224 (494)
+ .++++.....|+...+..+|.++|.++|++.. +.. .-+...+..+..+.+.|+..|++.+.+.++.
T Consensus 256 tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~ 335 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFS 335 (735)
T ss_pred cCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4 22333335789999999999999999999831 110 0112223344455567889999999999888
Q ss_pred HHHHhhcccCCCCCCCCCC--CCC--Ccccc-ccch----hhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHh
Q 011056 225 TCISASAAHEVPLGSHDQS--APF--SEEGH-EQSS----DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLL 295 (494)
Q Consensus 225 ~~~~~~~~~e~~~~~~~~~--~~~--~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (494)
.+..+++.++.|+..++.. +.+ ++++. ++++ +..+...+.+++.++| +.+...++...+....+.++.+
T Consensus 336 a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N--~if~~~~l~~~~~~~~~~G~~t 413 (735)
T KOG3626|consen 336 AVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSN--PIFMLVVLASVIESLAITGYIT 413 (735)
T ss_pred HHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhhHHH
Confidence 8888777777665432110 000 11110 0111 1223445556677777 8888888888888889999999
Q ss_pred hchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhc--chHHHHHHHHHHHHH
Q 011056 296 FDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG--AGFIWGISNILMALC 364 (494)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g--~~~~~~~~~~~~~~~ 364 (494)
|.|.|+.+ .|+.++..+ ..+.-.+...+..+|.+++|++++|+. .|....+.++...++
T Consensus 414 FlPKyLE~-Qfg~sas~A---------n~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~ 474 (735)
T KOG3626|consen 414 FLPKYLET-QFGISASLA---------NILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLS 474 (735)
T ss_pred hhHHHHHH-HcCCCHHHH---------HHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHH
Confidence 99999964 455444332 111112233445677888999999984 344444444333333
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-10 Score=108.39 Aligned_cols=316 Identities=15% Similarity=0.108 Sum_probs=183.7
Q ss_pred HHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHH--Hhhcc
Q 011056 74 CGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGF--WILDV 151 (494)
Q Consensus 74 ~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 151 (494)
...+...+..|..|.++| |+|||.++.+ ......+..+...+.. + +...+..+.. .....
T Consensus 70 ~~~~~~~i~s~~iG~lSD----~~grk~~L~~-~~~~~~l~~~~~~~~~-~------------~~~~~~~l~g~~~~~~s 131 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSD----RYGRKVVLLL-PLFGTILPALCLLFQG-Y------------WFFLLLGLSGGFSAIFS 131 (463)
T ss_pred hhHHHHHHHHhhhHHhhh----hhhhhhhHHH-HHHHHHHhHHHHHHHH-H------------HHhhhcccccchhhhhh
Confidence 346788899999999999 9999776665 5555555555554433 1 1111111100 01111
Q ss_pred ccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHH
Q 011056 152 ANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 228 (494)
Q Consensus 152 ~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 228 (494)
......+ .+++|.. ..++.......+..+++.+++... +. .+.-..|.+..+..++..+..
T Consensus 132 ~~~a~vadis~~~~R~~-~~gll~~~~~~~~~~~p~~~~~~~--~~-------------~~~a~~f~ia~~~~~~~~~y~ 195 (463)
T KOG2816|consen 132 VGFAYVADISSEEERSS-SIGLLSGTFGAGLVIGPALGGYLV--KF-------------LGIALVFLIAAASGILSLLYM 195 (463)
T ss_pred hhhhheeeccchhHHHH-HHHHHHHHHHHHHhHHHHHHHHHH--Hh-------------cCchHHHHHHHHHHHHHHHHH
Confidence 1111122 5667776 999999999999999999987621 11 155667888888888888888
Q ss_pred hhcccCCCCCCCCCC-CCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH-HHHhhchhhhhhhhc
Q 011056 229 ASAAHEVPLGSHDQS-APFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWF-PFLLFDTDWMGREIY 306 (494)
Q Consensus 229 ~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 306 (494)
...+||+..+++++. ...+.+.+..........++...+ .++ .|..+.++...++....-. ...-....|+ +..+
T Consensus 196 ~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl-~~~f 272 (463)
T KOG2816|consen 196 LLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTK-VGP-DRLLLLLLLVAFLSSLPEAGGASDVLLLYL-KAKF 272 (463)
T ss_pred hhccccccCccccccccccccCCCcccchhhhhhhhhhcc-cCC-CccchHHHHHHHHHHHHHhcCceeEEEEEE-eeec
Confidence 889999865544331 111111011000011111222222 112 2444444443333322111 1110111122 1223
Q ss_pred CCCCCCCccccccchhhHHHHHHHHHHHHHHHHHH-HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCC
Q 011056 307 GGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM-EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDL 385 (494)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (494)
+.+..+ .+.+ ....+....+++.+. +.+...+|.|++...|.....+....+.+..
T Consensus 273 ~w~~~~---------~s~~-~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~------------- 329 (463)
T KOG2816|consen 273 GWNKKE---------FSDL-LSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT------------- 329 (463)
T ss_pred CcCHHH---------HHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc-------------
Confidence 322211 1212 233445566666555 4778888989988899999999999888874
Q ss_pred CCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc
Q 011056 386 PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF 456 (494)
Q Consensus 386 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~ 456 (494)
..|..+....+. .......+...+.++...++ +++|+++++.+....+...++|.+.+.+...+
T Consensus 330 ----~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~--~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 330 ----ETWMMFAAGVVV-ALAGIVFPAIRAFASILVSP--EEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred ----cchhhhHHHHHH-HhhcchhHHHHhHHHhhccc--ccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 244444433333 33444556777888888888 99999999999999999999999999887654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=109.42 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
....++.+++.+++.|.+.||+|+|..+++|...+..+.+++.+.. +.+.++++-.+-|++.+
T Consensus 112 FaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~-----------------sy~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 112 FASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN-----------------SYPMLFVARSLQGVGSA 174 (464)
T ss_pred HHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc-----------------hhHHHHHHHHHhhhhHH
Confidence 4457888999999999999999999999999999999999999884 57788899999999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 486 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 486 (494)
...+...++++|.+|++ ++||+++|+.-.+..+|-.+||..+|.++|..| +...|++.+.++++-..+.++..+.++
T Consensus 175 ~~~tsglamlAd~f~~d-~er~~vmGialgfislG~lvgPpfGGilYe~~G--k~aPFlVL~~v~Lld~~L~l~vi~p~~ 251 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPED-NERGSVMGIALGFISLGVLVGPPFGGILYEFAG--KSAPFLVLAIVLLLDGALQLLVIEPTE 251 (464)
T ss_pred HHHhhhHHHHHHHcccc-hhhhHHHHHHHHHHhccceecCCcccchHhhcC--CcCcHHHHHHHHHHHHHHHHheeCccc
Confidence 99999999999999985 678999999999999999999999999999988 888999999999998888877766544
Q ss_pred CC
Q 011056 487 AQ 488 (494)
Q Consensus 487 ~~ 488 (494)
.+
T Consensus 252 ~~ 253 (464)
T KOG3764|consen 252 MD 253 (464)
T ss_pred cC
Confidence 43
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.9e-11 Score=115.22 Aligned_cols=178 Identities=10% Similarity=0.019 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
|.++.++...++..++........+.+..+ . +.++ ....+......+...+++++.|+++||+|||++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~s~----------~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~ 84 (417)
T PRK10489 17 PAFRAVFIARFISIFGLGLLGVAVPVQIQM-M-TGST----------LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL 84 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHH-H-HCCH----------HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE
Confidence 666666666667666655555556665532 2 1111 112233445677788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
+..+..+.+++......... ....+.+.+.+..++.|++.+...+...+.+.|.+|+ ++++++.++
T Consensus 85 l~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 150 (417)
T PRK10489 85 ILLARGTCGLGFIGLALNAF------------LPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR--ENLMQAGAI 150 (417)
T ss_pred EEehHHHHHHHHHHHHHHHH------------cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH--HHHHHHHHH
Confidence 88877777666655443210 0001345566666777887777777778888999988 889999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHh
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
.+....+|..+||.++|.+.+..+ +...+.+.++..+++.+...
T Consensus 151 ~~~~~~~g~~~g~~l~g~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 194 (417)
T PRK10489 151 TMLTVRLGSVISPALGGLLIAAGG--VAWNYGLAAAGTFITLLPLL 194 (417)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998766 55666666666555554443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.8e-11 Score=116.94 Aligned_cols=140 Identities=13% Similarity=0.088 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+....+.++..++.++.|++.||+|||+.+..+.++..++.++....+ +.+.+++...+.|++
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~G~~ 103 (485)
T TIGR00711 41 WVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP-----------------NLELMIIFRVIQGFG 103 (485)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC-----------------CHHHHHHHHHHHHhh
Confidence 334456778889999999999999999999999988888887766552 466777888889999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+...+...+++.|.+|+ ++|+++.++.+....+|..++|.++|.+.+..+ +...|++.+.+.++..++..+..|+
T Consensus 104 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--w~~~f~~~~~~~~~~~~~~~~~~~~ 179 (485)
T TIGR00711 104 GGPLIPLSFSTLLNIYPP--EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH--WRWIFLINVPIGIIVVVVAFFILPR 179 (485)
T ss_pred hhhHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC--ceehhhhhhHHHHHHHHHHHHHcCC
Confidence 998888899999999998 899999999999999999999999999998876 6667777666666655555554454
Q ss_pred C
Q 011056 485 S 485 (494)
Q Consensus 485 ~ 485 (494)
+
T Consensus 180 ~ 180 (485)
T TIGR00711 180 D 180 (485)
T ss_pred c
Confidence 3
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=111.72 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....+...++.++.|+++||+|||+.+..+.++.+++........ +.+..++...+.|++.+
T Consensus 44 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~ 106 (392)
T PRK10473 44 FSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE-----------------TSSLFLAGRFLQGIGAG 106 (392)
T ss_pred HHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC-----------------cHHHHHHHHHHHHhhhh
Confidence 4445667788899999999999999999998888888877766552 34556666777888888
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 486 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 486 (494)
...+..++++.|.+|+ ++|++..++.+....++..++|.+++.+.+..+ +...+.+.+++.++..++..+..||++
T Consensus 107 ~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 107 CCYVVAFAILRDTLDD--RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP--WQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC--hHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8777888999999998 899999999999999999999999998877665 566677777766666666555555543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-10 Score=114.55 Aligned_cols=175 Identities=12% Similarity=0.073 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh-hcch
Q 011056 273 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAG 351 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~~ 351 (494)
|+.++..+...++..++++....+.+.|+.++ ++.+..+ ................++.|++.|| +|||
T Consensus 20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-lg~s~~~----------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r 88 (500)
T PRK09584 20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ-LGMSEAD----------SITLFSSFSALVYGLVAIGGWLGDKVLGTK 88 (500)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 35678888888888888888888888888643 3322211 1111222222333445688999999 5999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhh
Q 011056 352 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 431 (494)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 431 (494)
+.+..+.++.+++..++.+.. + ..+.+.+...+.|++.+...+...+++.|.+|+++++++.+.
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~--------------~--~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~ 152 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG--------------H--DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAF 152 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------c--cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcc
Confidence 999999998888877766542 1 233445556677888888778888899999986434556678
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHH
Q 011056 432 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGL 476 (494)
Q Consensus 432 g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~ 476 (494)
++++....+|..++|.+.|++.+..| +...|.+.++..+++.+
T Consensus 153 ~~~~~~~~iG~~~gp~i~g~l~~~~g--~~~~F~i~~i~~~i~~i 195 (500)
T PRK09584 153 TMYYMSINIGSFFSMLATPWLAAKYG--WSVAFALSVVGMLITVV 195 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999877 67778776655555443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-10 Score=111.07 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++..++.++.|++.||+|||+.+..+..+.+++.+.....+ +.+.+++...+.|++.+
T Consensus 54 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~G~~~~ 116 (406)
T PRK15402 54 MTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ-----------------SIEQFTLLRFLQGIGLC 116 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc-----------------cHHHHHHHHHHHHhHhh
Confidence 4456777889999999999999999999988888888777766652 35666677778888888
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 486 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 486 (494)
...+...+.+.|.+|+ +++++..++......++..++|.+++.+.+..+ +...+.+.+++.+++.+...+..||++
T Consensus 117 ~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 117 FIGAVGYAAIQESFEE--ADAIKITALMANVALLAPLLGPLVGAALIHVLP--WRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred hHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--ccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7777788888999988 888888898888888899999999999988766 666777777777766665555555544
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-10 Score=106.56 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhh
Q 011056 328 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 407 (494)
Q Consensus 328 ~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 407 (494)
....+...++.++.|.++||.++|+.+.+++++.+++.+++++.. +.+.+.++..+-|..++.
T Consensus 71 s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~-----------------s~~~~~~l~~lng~fQg~ 133 (448)
T COG2271 71 SAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP-----------------SLFLFAVLWVLNGWFQGM 133 (448)
T ss_pred HHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh-----------------HHHHHHHHHHHHHHHhcC
Confidence 346777889999999999999999999999999999999999984 678888889999999999
Q ss_pred hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhh--hhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 408 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGS--GPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~--g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
..|.+...+..-+|. ++||+..+++|++.++|+.+.|.+. +.+.++.+ ....|++.++++++.+++.++..+.+
T Consensus 134 Gwpp~~~~i~~Wfsr--~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~--w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 134 GWPPCARTITHWFSR--KERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG--WRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred CCcHHHHHHHHHcCc--cccCceEEEehhhhhcccchHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999 9999999999999999999999999 88887754 77889999988888888777765544
Q ss_pred C
Q 011056 486 S 486 (494)
Q Consensus 486 ~ 486 (494)
+
T Consensus 210 P 210 (448)
T COG2271 210 P 210 (448)
T ss_pred c
Confidence 3
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-10 Score=104.54 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
.....++.+..+++++...+.||+.||++++....++.++.++..+.. +.+.+.+.-++.|+.
T Consensus 52 ~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp-----------------~f~~Ll~aR~~~g~a 114 (394)
T COG2814 52 QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP-----------------SFAVLLLARALAGLA 114 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHH
Confidence 445567888999999999999999999999999999999999988883 588899999999999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.|..+++..++..+.+|+ ++|+++.++......++..+|..++.++-|.+| +...|...+++.++..+..+...|
T Consensus 115 ~G~f~~i~~~~a~~lvpp--~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G--WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 115 HGVFWSIAAALAARLVPP--GKRGRALALVFTGLTLATVLGVPLGTFLGQLFG--WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHcCc--cchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999 999999999999999999999999999999998 788999999999999888888888
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=114.15 Aligned_cols=141 Identities=16% Similarity=0.051 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+....+.++..+..++.|+++||+|||+.+..+..+..++.++....+ +.+.+++.-.+.|++
T Consensus 45 ~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~-----------------~~~~li~~r~l~G~g 107 (495)
T PRK14995 45 WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP-----------------TASWLIATRALLAIG 107 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHHH
Confidence 334445666778889999999999999999999999988888877663 467777888889999
Q ss_pred hhhhhhchhhhHhhhc-ccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 405 LAITYSVPYALVSIRT-ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.+...+.....+.+.+ |+ ++|++++|+......+|..+||.++|.+.+..| +.+.|++...+.++..++..+..|
T Consensus 108 ~~~~~~~~~~~l~~~~~~~--~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g--wr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 108 AAMIVPATLAGIRATFTEE--KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY--WGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888777777776665 55 889999999999999999999999999999877 677787777666666666655555
Q ss_pred CCC
Q 011056 484 RSS 486 (494)
Q Consensus 484 ~~~ 486 (494)
+.+
T Consensus 184 ~~~ 186 (495)
T PRK14995 184 RQA 186 (495)
T ss_pred CCC
Confidence 543
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-10 Score=111.35 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
.....+.++..++.++.|+++||+|||+++..+..+.+++.++....+ +.+.+++.-++.|++
T Consensus 55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-----------------~~~~l~~~r~l~Gi~ 117 (413)
T PRK15403 55 ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT-----------------SMTQFLIARFIQGTS 117 (413)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHHH
Confidence 334455677888999999999999999999999888888777766652 466677777888888
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+...+..+..+.|.+|+ +++++.+++.+....++..++|.+++.+.+..| +...|.+.++..+++.+..++..||
T Consensus 118 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g--w~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 118 ICFIATVGYVTVQEAFGQ--TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH--WKVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 776566667788888888 888999999999999999999999999888766 6677887777777766655555566
Q ss_pred CCC
Q 011056 485 SSA 487 (494)
Q Consensus 485 ~~~ 487 (494)
+++
T Consensus 194 ~~~ 196 (413)
T PRK15403 194 TVK 196 (413)
T ss_pred Ccc
Confidence 543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.7e-11 Score=94.98 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhh
Q 011056 331 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 410 (494)
Q Consensus 331 ~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 410 (494)
.++..+++++.+++.||+|||+.+..+.....++.+...... +.+...+...+.|++.+...+
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~ 70 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-----------------NITVLIIARFLQGFGAAFALV 70 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999888888777776665542 356666778888998888888
Q ss_pred chhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 411 VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 411 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.....+.|..|+ +++++..++.+....++..++|.+.+.+.+..+ +...+.+.+...+++.+...+..||
T Consensus 71 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 71 AGAALIADIYPP--EERGVALGLMSAGIALGPLLGPPLGGVLAQFLG--WRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hHHHHHHHHCCh--hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc--hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 888999999998 899999999999999999999999999988765 5566777776666666666555443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-10 Score=110.82 Aligned_cols=174 Identities=16% Similarity=0.120 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
|+++.++...++..++........+... ++ ++.++ ....+....+.+...+..++.|++.||+|||++
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~s~----------~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~v 70 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIALL-KE-LHYPD----------WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRV 70 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCcH----------HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchh
Confidence 5566666666666654333333333333 22 12111 111233445667788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
+..+..+.+++.+...... +. ++..++.|++.+...+...+++.|.+|+ +++++++|+
T Consensus 71 l~~~~~~~~~~~~~~~~~~-----------------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~--~~~~~a~~~ 128 (393)
T PRK11195 71 MFIANGIKLLGCLLMLFGI-----------------HP---LLAYGLVGIGAAAYSPAKYGILTELLPG--EKLVKANGW 128 (393)
T ss_pred hHHHHHHHHHHHHHHHHHH-----------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 9999988877766655442 22 4455678999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
.+....++..+||.++|.+.+.. +...+.+.+.+.+++.+ ..+..||.
T Consensus 129 ~~~~~~~~~~~Gp~lgG~l~~~~---~~~~~~i~~~~~~~~~~-~~~~l~~~ 176 (393)
T PRK11195 129 MEGSTIAAILLGTVLGGALADPH---AEAALAVCALIYLLAAL-FNLFIPRL 176 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHhcCCCC
Confidence 99999999999999999998853 33334444443333333 23344443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-11 Score=110.71 Aligned_cols=129 Identities=18% Similarity=0.019 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhh
Q 011056 330 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 409 (494)
Q Consensus 330 ~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 409 (494)
.-.+.++.-++.+++.+|+|+-+++.+++.+..+-++.+.... ++|..+..-++-|+..+..+
T Consensus 415 ~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~-----------------n~W~vLPieilqgit~aliW 477 (618)
T KOG3762|consen 415 CHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ-----------------NPWMVLPIEILQGITHALIW 477 (618)
T ss_pred hccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc-----------------CchheeeHHHHHHHHHHHHH
Confidence 3455677788889999999999999999999988888887774 67888889999999999999
Q ss_pred hchhhhHhhhcccCCCCcchhhhHHHH-HHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHh
Q 011056 410 SVPYALVSIRTESLGLGQGLSLGVLNL-AIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
...-+++++..|+ +.+.++.|+... ...+|-.+|++++|.+.+.+| ....|.+.++.+++.+++..
T Consensus 478 aa~~sY~s~vaPp--~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg--~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 478 AAIISYASHVAPP--GLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG--ARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHHHHHHhhCCC--cchHHHHHHHHHHhcccCcchhhhhhhhhheeeh--hHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 889999988665 678899999999999999987 56667777766666655444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=113.24 Aligned_cols=186 Identities=19% Similarity=0.153 Sum_probs=132.5
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011056 268 TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 347 (494)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr 347 (494)
.+|+ |.++.+.....+..++......-.+-++. +. ..++ ..-.+......+..++.+++.|.++||
T Consensus 6 plr~--~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~l-t~S~----------~~valv~~a~~LP~~Llsl~aG~laDr 71 (524)
T PF05977_consen 6 PLRN--RNFRRLWIAQLISNLGDWMQTVALAWLVT-QL-TGSP----------LMVALVQAASTLPILLLSLFAGALADR 71 (524)
T ss_pred cccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hCCH----------HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556 77777777777666654443332332332 11 1111 111122334566778889999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCc
Q 011056 348 WGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 427 (494)
Q Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (494)
++||++++.+-++.++..+.+.+.... +..+.+.+++..++.|++.....|.-++++.+++|+ ++.
T Consensus 72 ~drrrili~~~~~~~~~~~~L~~l~~~------------~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~--~~L 137 (524)
T PF05977_consen 72 FDRRRILILSQLLRALVALLLAVLAFF------------GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK--EDL 137 (524)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHh------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--hhH
Confidence 999999998888776665555443211 112467788888899999999999999999999998 889
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 428 GLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 428 g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
..++++.+...++...+||.++|.++...| ....|.+-++..+++.+.....++
T Consensus 138 ~~A~al~s~~~niar~iGPalgG~Lva~~G--~~~~f~inalsfl~~i~~l~~~~~ 191 (524)
T PF05977_consen 138 PAANALNSISFNIARIIGPALGGILVAFFG--AAAAFLINALSFLISILALLRWKP 191 (524)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999887 666787777777666555554444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-10 Score=109.53 Aligned_cols=175 Identities=14% Similarity=-0.042 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
+++..+++..++...+......+++.++.++ ++.++ ....+......+...+++++.|+++||+|||++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~-~g~s~----------~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~ 83 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQ-LGFSA----------FLAGLVISLQYLATLLSRPHAGRYADTLGPKKA 83 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccH----------HHHHHHHHHHHHHHHHhchhhHhHHhccCCcch
Confidence 5566666777777766666666677766533 23222 112233445677788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
+..+.++.+++.+......... + ....+.+.+++..++.|++.+...+....++.|..|+ ++|+++.++
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~ 152 (399)
T PRK05122 84 VVFGLCGCALSGLLYLLAGLLA-A--------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGA--LHTGRVISW 152 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-c--------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh--hhhccchhh
Confidence 9998887776655444331000 0 0001244566677888999888888888888899988 899999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHH
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISAL 472 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 472 (494)
.+....+|..+++.+++.+.+..| +...+.+..++.+
T Consensus 153 ~~~~~~~g~~~g~~l~~~l~~~~g--~~~~~~~~~~~~~ 189 (399)
T PRK05122 153 NGIATYGALAIGAPLGVLLYHWGG--LAGLGLLIMLLAL 189 (399)
T ss_pred hhhhhhHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHH
Confidence 999999999999999999988776 4444544444433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-10 Score=112.96 Aligned_cols=112 Identities=11% Similarity=-0.028 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++.++++++.|+++||+|||+.++++.++.+++.++..+.. +.+.+++..++.|++.+
T Consensus 208 ~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~-----------------s~~~llv~R~l~G~g~g 270 (742)
T TIGR01299 208 GLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ-----------------GYGFFLFCRLLSGFGIG 270 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHHHH
Confidence 4445678899999999999999999999998888888777776653 46677788889999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
...+...+++.|.+|+ +.||..+++.+....+|.++++.++..+....|
T Consensus 271 ~~~p~~~~~isE~~p~--~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 271 GAIPIVFSYFAEFLAQ--EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred HHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999 999999999999999999999988877765543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-10 Score=108.68 Aligned_cols=157 Identities=14% Similarity=0.016 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
|.+....+..++...+......+.++++. + ++.++. ........+.++..+++++.|++.||+|||+.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~g~s~~----------~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~ 80 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLK-A-LGLSPQ----------QSASAFTLYGIAAAISAWISGVVAEIIGPLKT 80 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHH-H-hCCCHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 55555666666666665555556677663 3 232221 12233455678889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
+..+..+.+++.+...... ....+.+.+++...+.|++.+...+...+.+.+..|+ ++||+++|+
T Consensus 81 l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~--~~~g~~~g~ 145 (402)
T TIGR00897 81 MMIGLLLWCVGHAAFIVFG-------------LGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ--DNLSSAVGW 145 (402)
T ss_pred HHHHHHHHHHHHHHHHHHh-------------ccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH--HHHHHHHHH
Confidence 9988888877765543221 0001345556666777888777666666777888888 899999999
Q ss_pred HHHHHHHHH-HHHhhhhhhhhhhcC
Q 011056 434 LNLAIVIPQ-IVVSMGSGPWDQLFG 457 (494)
Q Consensus 434 ~~~~~~~g~-~l~~~~~g~l~~~~g 457 (494)
.+....+|. .++|.+++.+.+..|
T Consensus 146 ~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 146 FWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999997 578999998888766
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-10 Score=108.56 Aligned_cols=182 Identities=16% Similarity=0.150 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
+.+....+..++...+......+.+.+..+ ++.+..+. .............+...++.++.|+++||+|||+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 86 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQ--LGVTGHSA-----LNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM 86 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--hCCccchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH
Confidence 334444455555555555556667777643 22222110 00011233445667788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
+..+..+.+++.++..... +.+.+++...+.|++.+ ..+.....+.+..|+ ++|+++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~ 146 (408)
T PRK09874 87 LLRSALGMGIVMVLMGLAQ-----------------NIWQFLILRALLGLLGG-FVPNANALIATQVPR--NKSGWALGT 146 (408)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH--hhhhHHHHH
Confidence 9988888877777665543 35566666677777654 345566778888888 889999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+....+|..++|.+.+.+.+..+ +...+.+.+++.++..+...+..++
T Consensus 147 ~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (408)
T PRK09874 147 LSTGGVSGALLGPLAGGLLADSYG--LRPVFFITASVLFLCFLVTLFCIRE 195 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988766 6667777777666666655554444
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-10 Score=108.66 Aligned_cols=141 Identities=13% Similarity=0.108 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......+...++.++.|+++||+|||+.+..+..+..++.+...... +.+.+++...+.|++
T Consensus 47 ~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~g~~ 109 (394)
T PRK11652 47 AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH-----------------SLTVLIAASAIQGLG 109 (394)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----------------cHHHHHHHHHHHHhh
Confidence 334456777889999999999999999999988888877777665542 356667777788888
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+...+....+..|..+. ++++.+.+..+....++..++|.+.+.+.+..| +...|.+.++..++..+...+..||
T Consensus 110 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (394)
T PRK11652 110 TGVGGVMARTLPRDLYEG--TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG--WRACYLFLLLLGAGVTFSMARWMPE 185 (394)
T ss_pred hhHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 877666777777888877 788999999999999999999999999988766 6667776666555554444444455
Q ss_pred CC
Q 011056 485 SS 486 (494)
Q Consensus 485 ~~ 486 (494)
++
T Consensus 186 ~~ 187 (394)
T PRK11652 186 TR 187 (394)
T ss_pred cC
Confidence 43
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-10 Score=109.61 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....+...++.++.|++.||+|||+.+..+.++.+++.++..+.. +.+.+++..++.|++.+
T Consensus 53 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~G~~~~ 115 (405)
T TIGR00891 53 ISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP-----------------GYITMFIARLVIGIGMG 115 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHhhhh
Confidence 4446677889999999999999999999999888888877776653 46667778889999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHH
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAG 474 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~ 474 (494)
...+...+++.|..|+ ++|+++.++.+....+|..+++.+.+.+.+..+.++...|.+.++..++.
T Consensus 116 ~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 116 GEYGSSAAYVIESWPK--HLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred hhhHHHHHHHHHhCCh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 8888888999999998 89999999999999999999999999988876533445555544444333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-10 Score=108.08 Aligned_cols=138 Identities=17% Similarity=0.062 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......+...+++++.|+++||+|||+.+..+..+..++.+...+.. +.+.+++...+.|++
T Consensus 45 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~G~~ 107 (401)
T PRK11043 45 ASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE-----------------SAAQLLVLRFVQAVG 107 (401)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc-----------------CHHHHHHHHHHHHhh
Confidence 334456777889999999999999999999988888877777666552 356666667777887
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.+...+...+++.|.+|+ ++++...+..+....++..++|.+++.+.+..| +...+.+.+++.++..+..++..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 108 VCSAAVIWQALVIDRYPA--QKANRVFATIMPLVALSPALAPLLGAWLLNHFG--WQAIFATLFAITLLLILPTLRLKP 182 (401)
T ss_pred hHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 777666667888898887 778888888888889999999999999998876 666677766666666555544433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.2e-10 Score=110.60 Aligned_cols=137 Identities=21% Similarity=0.181 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++..++.++.|++.||+|||+.+..+.++..++.++..... +.+..++...+.|++.+
T Consensus 58 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~ 120 (398)
T TIGR00895 58 FSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT-----------------NVTQLLILRFLAGLGLG 120 (398)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc-----------------chHHHHHHHHHHhcccc
Confidence 3445677889999999999999999999988888888777766552 35666777888899988
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
...+...+++.|.+|+ ++|+++.++.+....+|..+++.+.+.+.+..| +...+.+.+++.++..++.....|+
T Consensus 121 ~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (398)
T TIGR00895 121 GLMPNLNALVSEYAPK--RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG--WRSLFYVGGIAPLLLLLLLMRFLPE 194 (398)
T ss_pred cchhhHHHHHHHHcCH--HhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc--ceeehhhhhhHHHHHHHHHHHhCCC
Confidence 8888899999999998 899999999999999999999999999998876 5666666655555554444444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.5e-10 Score=107.50 Aligned_cols=162 Identities=13% Similarity=-0.028 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
+.++.+....++...+........+.++.++ ++.+.. ...+......+...+++++.|+++||+|||++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~-lg~s~~----------~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~ 83 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHD-LGFGNT----------MVGIAVGIQFLATVLTRGYAGRLADQYGAKRS 83 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHh-cCCcHH----------HHHHHHHHHHHHHHHHhhhhhHHHHhhcchHH
Confidence 4445555555555555445555566666433 232221 12233445677788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
+..+.+...++.+......... . ....+.+.+++...+.|++.+...+...+.+.|.+|+ ++|+++++.
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~a~~~ 152 (392)
T PRK12382 84 ALQGMLACGLAGLAYLLAAILP-V--------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP--KHSGKVMSW 152 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhccc-c--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc--cccchhhhH
Confidence 9888777666544332221000 0 0011456667777888998888777777888899998 899999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
.+.....+..++|.+++.+.+..|
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~~g 176 (392)
T PRK12382 153 NGMAMYGALAAGAPLGLLLHSHFG 176 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999888766
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-10 Score=106.97 Aligned_cols=138 Identities=12% Similarity=-0.041 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
...+.++..+++++.|++.||+|||+++..+......+.... .. +. +...+++.-++.|++.+
T Consensus 32 ~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~--------------~~--~~~~l~~~R~l~G~g~~ 94 (368)
T TIGR00903 32 AITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL-LD--------------PF--NYEWLLACQLLAALGQP 94 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH-HH--------------hc--cHHHHHHHHHHHHhHhH
Confidence 444567788999999999999999887665444443332211 22 11 46677888888899888
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 486 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 486 (494)
.. .......+|.+|+ ++|+++.++.+....+|..+++.+++.+.+..| +...|.+.+++.++..++.++..||.+
T Consensus 95 ~~-~~~~~~~~~~~~~--~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g--Wr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 95 FL-LNAFAPAASQIRE--ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG--LQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HH-HHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 54 4555666899998 999999999999999999999999999988766 677888877777776666666666644
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-09 Score=94.74 Aligned_cols=276 Identities=14% Similarity=0.107 Sum_probs=147.5
Q ss_pred HHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccc
Q 011056 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (494)
Q Consensus 46 ~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~ 125 (494)
+..++.+++-...++.|++..+++.+.........+..++.|.++| |+||||..++.+ ++..++++.- ..+++.
T Consensus 49 aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD----~~Grk~~cl~~c-ily~~scl~k-~~~~~~ 122 (354)
T PF05631_consen 49 ADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLAD----RYGRKKACLLFC-ILYSLSCLTK-HSSNYP 122 (354)
T ss_pred HHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchHHHHHHH-HHHHHHHHHH-hccccH
Confidence 4445556666666889999999999999999999999999999999 999999777744 4555555554 556662
Q ss_pred cccCCCCCCcchHHHHHHHHHHhhcccccccccccc----chhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcc
Q 011056 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGKDH----RRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 201 (494)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~ 201 (494)
..+..+++.+++..++..+.-.+...|+ .+.+.....+..+.-+++.+-.+++|++. .+..+
T Consensus 123 --------~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a-----~~l~~- 188 (354)
T PF05631_consen 123 --------VLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVA-----NVLAD- 188 (354)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHH-----HHHHH-
Confidence 2223334444444444444444443111 11111122222111133333233333210 01111
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHH
Q 011056 202 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI 281 (494)
Q Consensus 202 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (494)
....+...+|.....+..+..++.....+|+..+..++ .+.....++-.+.+++ +|+.+.+.+
T Consensus 189 ---~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~-------------~~~~~~~~~a~~~i~~-d~ril~LG~ 251 (354)
T PF05631_consen 189 ---WFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSS-------------SSLSGSFREAWRAILS-DPRILLLGL 251 (354)
T ss_pred ---HhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccc-------------cchHHHHHHHHHHHHc-CchhHHHHH
Confidence 11113466788887777777777666667765332211 0012223333333333 277777878
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh-hcchHHHHHHHHH
Q 011056 282 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGFIWGISNIL 360 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~~~~~~~~~~~ 360 (494)
++.+.-.+.+.+....++-+.. + +.....|.+ .....+..++|+.+..++..| ......+.....+
T Consensus 252 ~qslFE~smy~FVflWtPaL~~-----~-------~~~~P~GlI-FssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~ 318 (354)
T PF05631_consen 252 IQSLFEGSMYLFVFLWTPALDP-----D-------DEELPLGLI-FSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAV 318 (354)
T ss_pred HHHHHHHHHHHheeeeeceecC-----C-------CCCCCchHH-HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7777766666655544444420 0 111122323 223445677888887666544 3333444444444
Q ss_pred HHHHHHHHHHH
Q 011056 361 MALCFLAMLIL 371 (494)
Q Consensus 361 ~~~~~~~~~~~ 371 (494)
.++++.+-.+.
T Consensus 319 aa~~l~~pv~~ 329 (354)
T PF05631_consen 319 AAVSLAIPVVT 329 (354)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=109.28 Aligned_cols=140 Identities=18% Similarity=0.074 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++..++.++.|++.||+|||+++..+.++..++.++..+.. +.+.+++...+.|++
T Consensus 54 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~G~~ 116 (406)
T PRK11551 54 WAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAW-----------------DFPSLLVARLLTGVG 116 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHhh
Confidence 334456777889999999999999999999998888777776655552 466677788888999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+...+...+++.|.+|+ ++|++++++.+....+|..+++.+.+.+.+..+ +...+.+.+++.++..++.....||
T Consensus 117 ~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 192 (406)
T PRK11551 117 LGGALPNLIALTSEAVGP--RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA--WRHIFYVGGVGPLLLVPLLMRWLPE 192 (406)
T ss_pred HHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC--HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888888888999999998 899999999999999999999999887777655 5556666665555554444444444
Q ss_pred C
Q 011056 485 S 485 (494)
Q Consensus 485 ~ 485 (494)
+
T Consensus 193 ~ 193 (406)
T PRK11551 193 S 193 (406)
T ss_pred C
Confidence 3
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-10 Score=105.33 Aligned_cols=152 Identities=9% Similarity=-0.003 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
+.++.++...++...+......+.+.+..+ ++.+. ....+......++..+++++.|++.||+|||+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~~~s~----------~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~ 73 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ--EHLPT----------WQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS 73 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--cCCCH----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 667777777777777777777778877753 23221 122244555677889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
+..+.++.+++.....+.+ +.+.+++..++.|++.+...+.....+.+..++ ++|+++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 134 (381)
T PRK03633 74 YYLASLIFAAGCAGLGLMV-----------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS--RNRGRLLAA 134 (381)
T ss_pred HHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHH
Confidence 9999988888887776653 466777788888998888777766777777777 889999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhc
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLF 456 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~ 456 (494)
.+....+|..+||.+.+.+.+..
T Consensus 135 ~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 135 YMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999887653
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-11 Score=113.19 Aligned_cols=141 Identities=16% Similarity=0.074 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....+...+.+++.|++.||+.|++++.+|..+..++.+...+.. ..|.+.++-.+.|+|.+
T Consensus 74 ~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-----------------~Fwq~~l~R~~vGiGeA 136 (493)
T KOG1330|consen 74 QTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-----------------HFWQVLLCRGFVGIGEA 136 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhccchh
Confidence 3345667889999999999999999999999999999888888775 57889999999999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 486 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 486 (494)
.+.++.+++++|.+|+ ++|++.+++++++..+|..+|-.+++.+.+..++ ++++|...+++.++.+++..++.+|.+
T Consensus 137 s~~~ia~s~IaD~f~~--~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~-Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 137 SYSPIAPSLIADSFPD--DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW-WRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred hhcccchhHhhhcCcc--hhhhHHHHHhhhhcccccceeEEeeeeeccCccc-eEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 9999999999999999 9999999999999999999999999999888763 788899999999998888888877655
Q ss_pred C
Q 011056 487 A 487 (494)
Q Consensus 487 ~ 487 (494)
+
T Consensus 214 r 214 (493)
T KOG1330|consen 214 R 214 (493)
T ss_pred c
Confidence 4
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=110.95 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......+...++.++.|++.||+|||+.+..+.++.+++..+..+.. +.+.+++...+.|++
T Consensus 33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~ 95 (399)
T TIGR00893 33 YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG-----------------AYVSLYILRVLLGAA 95 (399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc-----------------CHHHHHHHHHHHHHH
Confidence 334456778889999999999999999999999888888887777663 467778888899999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+...+....++.|.+|+ ++|++.+++.+....+|..+++.+.+.+.+..+ +...|.+.+++.++..+...+..++
T Consensus 96 ~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (399)
T TIGR00893 96 EAPFFPGIILIVASWFPA--SERATAVSIFNSAQGLGGIIGGPLVGWILIHFS--WQWAFIIEGVLGIIWGVLWLKFIPD 171 (399)
T ss_pred HHhhhhHHHHHHHHhCCH--HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHhhheecC
Confidence 998888889999999998 899999999999999999999999999888876 6667777777666666555544443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-10 Score=108.12 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++..++.++.|++.||+|||+.+..+.++.+++........ +.+...+...+.|++.+
T Consensus 32 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~ 94 (377)
T PRK11102 32 LSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ-----------------TIDQLIYMRFLHGLAAA 94 (377)
T ss_pred HHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc-----------------cHHHHHHHHHHHHHHHH
Confidence 4456677889999999999999999999999988888888777653 35666777788888888
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
...+...+++.|.+|+ ++|+++.++.+....++..++|.+++.+.+..+ +...|.+.+.+.++..+...+..||+
T Consensus 95 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 95 AASVVINALMRDMFPK--EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS--WHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8888888999999998 899999999999999999999999999998766 56677777776666665555555543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-09 Score=104.73 Aligned_cols=150 Identities=14% Similarity=0.102 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Q 011056 276 IWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG 355 (494)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~ 355 (494)
++..+...+...........+.+.++.++ ++.++. ...+......++..++.++.|++.||+|||+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~----------~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 71 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDD-LGLSTA----------QLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTT 71 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHH-hCCCHH----------HhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 44455555555555556666666555433 333221 1223344567778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHH
Q 011056 356 ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLN 435 (494)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 435 (494)
.+.++..++.++..+.. . +.+.+++..++.|++.+. .+....++.|.+|+ ++|+++.++..
T Consensus 72 ~~~~~~~i~~~~~~~~~--------------~--~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~--~~r~~~~~~~~ 132 (366)
T TIGR00886 72 LSLLLLAIPCLWAGLAV--------------Q--SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPK--KIQGTALGLAA 132 (366)
T ss_pred HHHHHHHHHHHHHHHHh--------------h--hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCH--hhhhHHHHHHH
Confidence 99998888887776652 0 245566667777877554 44567888999998 89999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhh
Q 011056 436 LAIVIPQIVVSMGSGPWDQL 455 (494)
Q Consensus 436 ~~~~~g~~l~~~~~g~l~~~ 455 (494)
....+|..+++.+.+.+.+.
T Consensus 133 ~~~~~g~~~~~~i~~~l~~~ 152 (366)
T TIGR00886 133 GWGNMGGGVAQFVMPPIIGS 152 (366)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 88888888888887776653
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-09 Score=107.18 Aligned_cols=143 Identities=13% Similarity=0.039 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++..++.++.|++.||+|||+.+..+.++.+++.++..... ....+.+.+.+...+.|++
T Consensus 65 ~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~l~g~~ 131 (438)
T TIGR00712 65 FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVP-------------WATSSIAIMFVLLFLNGWF 131 (438)
T ss_pred HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccc-------------cccchHHHHHHHHHHHHHH
Confidence 334456677889999999999999999999888888887777655431 0001344455666677888
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhh-cCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL-FGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~-~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.+...+.....+.|.+|+ ++||+++|+.+....++..+++.+.+...+. .+ +...|++.+++.++..+..+++.|
T Consensus 132 ~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 132 QGMGWPPCGRTMVHWWSQ--SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND--WHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred hhcchHHHHHHHHHhcCc--ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 887777777888899998 8999999999999999999998887765543 33 566788777777766555555444
Q ss_pred C
Q 011056 484 R 484 (494)
Q Consensus 484 ~ 484 (494)
|
T Consensus 208 ~ 208 (438)
T TIGR00712 208 D 208 (438)
T ss_pred C
Confidence 4
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-09 Score=104.40 Aligned_cols=132 Identities=14% Similarity=0.026 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++..+++++.|++.||+|||+.+..+..+..++.++..+.+ +.+..++...+.|++.+
T Consensus 48 ~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~-----------------~~~~~~~~~~l~G~~~g 110 (394)
T PRK03699 48 FTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSH-----------------SLALFSIAMFVLGVVSG 110 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc-----------------hHHHHHHHHHHHHHhhH
Confidence 4445677889999999999999999999988888888777766652 45666777788888888
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhh-cCCCCcchHHHHHHHHHHHHHHHh
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL-FGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~-~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
...+...+.+.|..|+ ++|+...+..+....++..++|.+.+.+.+. .+ +...|.+.+++.++..++.+
T Consensus 111 ~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g--w~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 111 ITMSIGTFLITHVYEG--KQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE--WYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred hhccchhHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHH
Confidence 8887888889999988 8899999998888889999999998887653 34 56677766666555544433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=107.04 Aligned_cols=143 Identities=13% Similarity=0.028 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++..+++++.|+++||+|||+++..+.++.+++.+...+.. ....+.+..++...+.|++
T Consensus 67 ~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~~~l~gi~ 133 (452)
T PRK11273 67 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP-------------WATSSIAVMFVLLFLCGWF 133 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhh-------------cccccHHHHHHHHHHHHHH
Confidence 334456777889999999999999999999999988888887776652 1111345566667788888
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHH-HhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIV-VSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l-~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.+...+.....+.+.+|+ ++|++++|+.+....+|..+ +|.+...+....+ +...|++.+++.++..++..++.|
T Consensus 134 ~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g--w~~~f~i~~~~~~~~~~l~~~~~~ 209 (452)
T PRK11273 134 QGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND--WHAALYMPAFAAILVALFAFAMMR 209 (452)
T ss_pred HhccchHHHHHHHHhCCh--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 887776666778888888 88999999999998888754 4544333332223 566777776666665555544444
Q ss_pred C
Q 011056 484 R 484 (494)
Q Consensus 484 ~ 484 (494)
+
T Consensus 210 ~ 210 (452)
T PRK11273 210 D 210 (452)
T ss_pred C
Confidence 3
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-09 Score=105.10 Aligned_cols=136 Identities=14% Similarity=0.024 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++..++.++.|++.||+|||+++..+.++.+++.++..+.. +.+.+++..++.|++.+
T Consensus 77 ~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----------------s~~~l~~~r~l~G~~~~ 139 (476)
T PLN00028 77 GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS-----------------SATGFIAVRFFIGFSLA 139 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc-----------------CHHHHHHHHHHHHHHHH
Confidence 3445666788899999999999999999888888887777666652 34555566677787776
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC-------CCCcchHHHHHHHHHHHHHHHh
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG-------GGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g-------~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
... .....+.|.+|+ ++||+++|+.+....+|..+++.+.+.+.+... .++...|.+.+++.++..+..+
T Consensus 140 ~~~-~~~~~i~~~~~~--~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 140 TFV-SCQYWMSTMFNG--KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred hhH-HHHHHHHHhcCh--hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 543 344567899998 899999999988888888888777665543210 1256677777777766655555
Q ss_pred hcc
Q 011056 480 LAI 482 (494)
Q Consensus 480 ~~~ 482 (494)
++.
T Consensus 217 ~~~ 219 (476)
T PLN00028 217 TLG 219 (476)
T ss_pred HHc
Confidence 443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-09 Score=105.09 Aligned_cols=173 Identities=16% Similarity=0.076 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH-HHH
Q 011056 281 IVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI-SNI 359 (494)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~-~~~ 359 (494)
+..++...+......+.+.++.++ ++.++ ....+......+...+.+++.|+++||+||||.++. +..
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~-~g~s~----------~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~ 72 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEE-VRARP----------AMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCL 72 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcc-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 344555555555556667666433 22221 111233344566678888999999999999887654 444
Q ss_pred HHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcch--hhhHHHHH
Q 011056 360 LMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGL--SLGVLNLA 437 (494)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~g~~~~~ 437 (494)
+..++.++..+.+ +.+.+++...+.+...+...+...++..|..|+ ++|+. ..+..+..
T Consensus 73 ~~~~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 133 (375)
T TIGR00899 73 LAALACLLFAWNR-----------------NYFLLLVLGVLLSSFASTANPQLFALAREHADR--TGREAVMFSSVMRAQ 133 (375)
T ss_pred HHHHHHHHHHhcc-----------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh--cchhhHHHHHHHHHH
Confidence 4445545544432 344444444555555555666667777777776 44543 36778888
Q ss_pred HHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 438 IVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 438 ~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
..+|..++|.+++.+.+..+ +...|.+.+.+.++..+..++..||.
T Consensus 134 ~~~g~~ig~~~~~~l~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T TIGR00899 134 ISLAWVIGPPLAFWLALGFG--FTVMFLTAALAFVLCGVLVWLFLPSY 179 (375)
T ss_pred HhHHHHHhhhHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 89999999999999988766 66778887777777666665545543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=108.98 Aligned_cols=139 Identities=17% Similarity=0.108 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++..++.++.|+++||+|||+.+..+..+.+++.++..+.. +.+.+++...+.|++
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~ 96 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-----------------SLWVMAALWALNGIF 96 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHhh
Confidence 334456777889999999999999999999999998888888877763 466777788888999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHh-hhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVS-MGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~-~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.+...+...+++.|.+|+ ++|+++.++.+....+|..++| .+.+.+.+..+ +...|.+.+++.++..++.++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T TIGR00881 97 QGMGWPPCGRTVTKWFSR--SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS--WHWVFIVPGIIAIIVSLICFLLLR 172 (379)
T ss_pred ccccCCchHHHHHHhcCH--hhheeeEeehhccchhHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHheeeC
Confidence 888888889999999998 8999999999999999999999 46666655544 556677766666665555555444
Q ss_pred C
Q 011056 484 R 484 (494)
Q Consensus 484 ~ 484 (494)
+
T Consensus 173 ~ 173 (379)
T TIGR00881 173 D 173 (379)
T ss_pred C
Confidence 3
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=108.98 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++..++.++.|++.||+|||+.+..+.++.+++.++..+.. +.+.+.+...+.|++.+
T Consensus 61 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~G~~~~ 123 (496)
T PRK03893 61 ISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP-----------------GYWTLFIARLVIGMGMA 123 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHH
Confidence 4445677888999999999999999999999888888888777663 46667778888899888
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHH
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGG 468 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~ 468 (494)
...+....++.|.+|+ ++|+++.++.+....+|..++|.+.+.+.+..+ +...|.+..
T Consensus 124 ~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--w~~~f~~~~ 181 (496)
T PRK03893 124 GEYGSSATYVIESWPK--HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG--WRALFFIGI 181 (496)
T ss_pred HHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHH
Confidence 8888888999999998 899999999999999999999999999988766 555555543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-09 Score=107.09 Aligned_cols=141 Identities=16% Similarity=0.082 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
...+.++..++.++.|+++||+|+|+++..+.++.++..+.+..... ....+.+.+++...+.|++.+
T Consensus 70 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~r~l~G~~~~ 137 (467)
T PRK09556 70 GLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLG------------SGSVSLGLMIALWALSGFFQS 137 (467)
T ss_pred HHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHh------------cccchHHHHHHHHHHHHHHHh
Confidence 44466778899999999999999999998888877777666554310 001146677778888899988
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc-CCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF-GGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~-g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
...+....++.+.+|+ ++||+++|+.+....+|.++++.+...+.+.. +.+....|.+.+++.++.+++.+++
T Consensus 138 ~~~~~~~~~i~~~~~~--~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 138 TGGPCSYSTITRWTPR--RKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred ccchHHHHHHHHHcCc--cceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 8888888999999999 89999999999999999999998887766643 2224445666565555554444443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=102.48 Aligned_cols=133 Identities=19% Similarity=0.156 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
.......+...++.++.|++.||+|||+.+..+..+..++.+.....+ +.+...+...+.|++
T Consensus 38 ~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~ 100 (352)
T cd06174 38 LIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS-----------------SLWLLLVGRFLLGLG 100 (352)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHcc
Confidence 334456777899999999999999999999999999888888777653 467777888889999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHH
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIA 478 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~ 478 (494)
.+...+...+++.|..|+ ++|++.+++.+....+|..++|.+.+.+.+..+ +...+.+.++..++..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 101 GGALYPAAAALIAEWFPP--KERGRALGLFSAGFGLGALLGPLLGGLLAESLG--WRWLFLILAILGLLLALLL 170 (352)
T ss_pred cccccHhHHHHHHHhCCc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHH
Confidence 988888899999999998 899999999999999999999999999998765 5556666666555554443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-09 Score=104.23 Aligned_cols=123 Identities=15% Similarity=0.029 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......+...+++++.|++.||+|||+++..+.++.+++.++..+.+ +.+.+++...+.|++
T Consensus 57 ~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~r~l~G~g 119 (426)
T PRK12307 57 FLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS-----------------GVIMLTLSRFIVGMG 119 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHH
Confidence 334456777889999999999999999999999999988888777763 467777888899999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHH
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGG 468 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~ 468 (494)
.+...+....++.|..|+ ++|+++.++......+|..+++.+.+.+.+..+ +...|.+..
T Consensus 120 ~g~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~--w~~~f~i~~ 179 (426)
T PRK12307 120 MAGEYACASTYAVESWPK--HLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG--WRAAFFVGL 179 (426)
T ss_pred HhhHHHHHHHHHHHhCCH--hHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC--HHHHHHHHH
Confidence 998888888999999998 899999999999999999999999888887765 555665543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.5e-09 Score=99.09 Aligned_cols=109 Identities=16% Similarity=0.063 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhh
Q 011056 328 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 407 (494)
Q Consensus 328 ~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 407 (494)
.+..+...+.+++.|++.||+|.|+++.++.++.++..+...+... ....+.+.+++..++.|++ +.
T Consensus 77 ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~------------~~~~s~~~lli~r~l~Gig-g~ 143 (462)
T PRK15034 77 ALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQ------------NPNTPFGIFIVIALLCGFA-GA 143 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc------------ccCCCHHHHHHHHHHHHHH-HH
Confidence 3355667788888999999999999999998888888777766410 0011567788888888887 66
Q ss_pred hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhh
Q 011056 408 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGP 451 (494)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~ 451 (494)
.++.....+++.+|+ ++||++.|+......+|..+++.+...
T Consensus 144 ~f~~~~~~vs~wfp~--~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 144 NFASSMGNISFFFPK--AKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred hHHHHHHHHHHHCCH--hHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777888899999998 899999999965666666555554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=104.44 Aligned_cols=184 Identities=15% Similarity=0.132 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
+++|.+.+..++.+.+......+.+.|+.++ ++.++ ....+......+...+++++.|+++||+|||+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~s~----------~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~ 78 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDI-NGLSG----------TDTGIIFSANSLFALLFQPLYGLISDKLGLKKH 78 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence 7788877777887777777788888888653 23222 112234555778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhH
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 433 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 433 (494)
+..+..+.+++.......... +. ..........+.++..+...........+..++..+++|..+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 145 (420)
T PRK09528 79 LLWIISGLLVLFGPFFIYVFA-----------PL--LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGR 145 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HH--HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchh
Confidence 877655554443322111000 00 00001111122222222222222222222222112567888899
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 434 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 434 ~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+....+|..++|.++|.+.+. + +...|+..++..++..++.++.+++
T Consensus 146 ~~~~~~~g~~i~~~~~g~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 146 ARMWGSLGWALCAFIAGILFNI-N--PQINFWLGSGSALILLVLLFFAKPD 193 (420)
T ss_pred hHHhhhHHHHHHHHHHHHHHhc-C--chHhHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999998874 3 4566777776666666555554433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.2e-09 Score=101.55 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++..+++++.|++.||+|||+++..+.++.+++.+...+.. +.+.+++...+.|++
T Consensus 42 ~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~ 104 (377)
T TIGR00890 42 IWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIAD-----------------SLAALYLTYGLASAG 104 (377)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhHH
Confidence 334556778899999999999999999999999998888888777764 466667777788888
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.+...+.....+.+..| ++|+++.++.+....+|..+++.+.+.+.+..+ +...|.+.++..++..+..++..+
T Consensus 105 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 105 VGIAYGIALNTAVKWFP---DKRGLASGIIIGGYGLGSFILSPLITSVINLEG--VPAAFIYMGIIFLLVIVLGAFLIG 178 (377)
T ss_pred HHHHHHhHHHHHHHHcC---cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHhee
Confidence 88777666667777766 568999999999999998887777777766554 566777777776666655554443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.6e-09 Score=99.14 Aligned_cols=181 Identities=14% Similarity=0.062 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHH-HHHHHHHHHHHHHhhhcchH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV-VLGITSVLMEKLCRKWGAGF 352 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~g~~~ 352 (494)
.+.+.+.+..++...+......+.+.++.++ ++.++. +.+.. .....+ ..+.+.+..++ .||+|+||
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~-~~~s~~---------~~g~~-~~~~~~~~~~~~~~~~~~-~dr~g~r~ 82 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDE-VHARPA---------MVGFF-FTGSAVIGILVSQFLAGR-SDKRGDRK 82 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHH---------HHHHH-HHHHHHHHHHHHHHHHHH-Hhcccchh
Confidence 4555666667777777666667777777543 222211 12222 122233 33444444555 99999998
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhh
Q 011056 353 IWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 431 (494)
Q Consensus 353 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 431 (494)
.++ .+.++.+++..+..+.. +.+.+++...+.+...+...+....+..+..+++++..+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (393)
T PRK15011 83 SLIVFCCLLGVLACTLFAWNR-----------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFS 145 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHH
Confidence 754 44455445555444442 234333333333333344455556666665554212234556
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 432 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 432 g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
++.+....+|..++|.+++.+.+..| +...|...++..++.++..++..|+.
T Consensus 146 ~~~~~~~~lg~~~g~~i~~~l~~~~g--w~~~f~~~~~~~~~~~~~~~~~~~~~ 197 (393)
T PRK15011 146 SFLRAQVSLAWVIGPPLAYALAMGFS--FTVMYLSAAVAFIVCGVMVWLFLPSM 197 (393)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 78888999999999999999998877 66778777777776666655555554
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.10 E-value=9e-09 Score=99.16 Aligned_cols=114 Identities=11% Similarity=-0.126 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++..+++++.+++.||+|||+.+..+..+.+++.+++.... ...+.+.+++..++.|++
T Consensus 42 ~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~--------------~~~~~~~~l~~~~l~G~g 107 (410)
T TIGR00885 42 LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA--------------EIMNYTLFLVGLFILTAG 107 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--------------hhccHHHHHHHHHHHHhh
Confidence 334556778899999999999999999999999999988887764431 111456677778889999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 454 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~ 454 (494)
.+...+....++.+..|+ +++++..++.+....+|..++|.+.+.+..
T Consensus 108 ~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 108 LGFLETAANPYILVMGPE--STATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred HHHHHhhhhHHHHHHCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888888888888 889999999999999999999999988754
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-09 Score=101.01 Aligned_cols=182 Identities=14% Similarity=0.101 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
|.+|.+....++.+.++.....+.+.|+.++ ++.++. ...+......+...+++++.|+++||+|||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~----------~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~ 70 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDV-NGLSKT----------DTGIVFSCISLFSILFQPLFGLISDKLGLKKH 70 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 6788888888888888888888888888643 232221 12234555778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCC--chHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhh
Q 011056 354 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPN--GIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 431 (494)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 431 (494)
+..+....+++......... . +.. .......+..++.+++.+...+....+..+.. ++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~ 135 (396)
T TIGR00882 71 LLWIISGLLVLFAPFFIYVF---G--------PLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS----RNSNFEY 135 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh---h--------hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh----hhccccc
Confidence 98766655444333221100 0 000 01112233344555555555555555544432 3345667
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 432 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 432 g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
|.......+|..++|.++|.+.+. + +...|.+.+++.++..++.+...++
T Consensus 136 g~~~~~~~~g~~~g~~~~g~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 136 GKARMFGCVGWALCASIAGILFSI-D--PQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred chhhhhcccHHHHHHHHHhhhhcc-C--chHHHHHHHHHHHHHHHHHHHhCCC
Confidence 778888899999999999988663 4 5667777777666665555444443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-09 Score=100.27 Aligned_cols=127 Identities=17% Similarity=-0.007 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+....+.++..+++++.|++.||+|||+++..+..+.+++.+...+.+ +.+.+++..++.|++
T Consensus 48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~-----------------~~~~ll~~r~l~Gig 110 (393)
T PRK09705 48 LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYP-----------------QSALLLSSALLGGVG 110 (393)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCc-----------------chHHHHHHHHHHHhH
Confidence 334445677888999999999999999999999999999999888773 466777888899999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHH
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISAL 472 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 472 (494)
.+...+....++.+.+| ++|+.++|+.+.....|..+++.+.+.+.+... ++...+.+.++..+
T Consensus 111 ~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~-~w~~~~~~~~~~~~ 174 (393)
T PRK09705 111 IGIIQAVMPSVIKRRFQ---QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSE-TWYQTLAWWALPAV 174 (393)
T ss_pred HHHHhhhhhHHHHHHcc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence 99888888888888775 568999999999999999999999998887642 24444444444333
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=97.49 Aligned_cols=107 Identities=21% Similarity=0.067 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhh
Q 011056 328 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 407 (494)
Q Consensus 328 ~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 407 (494)
..+++..++.++..|.++||+|||.++..+.+..++...+.+... +...++..-++.|+.-+-
T Consensus 75 SsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~-----------------~F~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 75 SSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR-----------------NFAAFVLARFLGGIFKGN 137 (451)
T ss_pred hHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhhhhccCc
Confidence 336778999999999999999999999999999988888777763 343344446677776664
Q ss_pred hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011056 408 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 454 (494)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~ 454 (494)
. .+..++++|++++ ++|+.+++..+....+|.++||.++|++..
T Consensus 138 l-~v~rAiisdV~se--k~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 138 L-SVIRAIISDVVSE--KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred h-HHHHHHHHhhcCh--hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 4 5778999999999 999999999999999999999999999987
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-09 Score=104.80 Aligned_cols=141 Identities=16% Similarity=0.018 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++..+++++.|++.||+|||+.+..+.++..++.++..... ...+.+.+++...+.|++
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~r~l~G~~ 140 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA--------------FALSVEMLIVGRVLLGIG 140 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--------------cccchHHHHHHHHHHHhh
Confidence 334556778899999999999999999999999888888877775542 111345677788899999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhh---hhhhhhcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGS---GPWDQLFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~---g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
.+...+...+++.|.+|+ ++|+++.++.+....+|..+++.+. +...+..+ +...|.+.+...++..+.. ++
T Consensus 141 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--w~~~f~~~~~~~~~~~~~~-~~ 215 (481)
T TIGR00879 141 VGIASALVPMYLSEIAPK--ALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG--WRIPLGLQLIPAGLLFLGL-FF 215 (481)
T ss_pred hhHHHhHHHHHHHccCCh--hhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc--HHHHHHHHHHHHHHHHHHH-hc
Confidence 998888889999999998 8999999999999999999999998 55444444 5566666555444444333 33
Q ss_pred ccC
Q 011056 482 IPR 484 (494)
Q Consensus 482 ~~~ 484 (494)
.+|
T Consensus 216 l~~ 218 (481)
T TIGR00879 216 LPE 218 (481)
T ss_pred CCC
Confidence 444
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.1e-09 Score=114.66 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....+..++++++.|+++||+|||+++..+.++..+..++..+... .. +.+.+++..++.|++.+
T Consensus 53 ~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~------------~~--~~~~l~~~r~l~G~~~~ 118 (1146)
T PRK08633 53 NALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY------------LG--WFWLAFAVTFLLGAQSA 118 (1146)
T ss_pred HHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH------------Hc--cHHHHHHHHHHHHHHHH
Confidence 44456778899999999999999999998887665555544433210 00 36677778888999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 455 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~ 455 (494)
...+...+++.|.+|+ +++++++|+.+....+|..+|+.+++++.+.
T Consensus 119 ~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 119 IYSPAKYGIIPELVGK--ENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhchHHHhhhHHhcCc--ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9889999999999999 8999999999999999999999999999876
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=8e-09 Score=101.15 Aligned_cols=131 Identities=15% Similarity=0.058 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHH-HHHHhhHhhh
Q 011056 329 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALII-FTILGGPLAI 407 (494)
Q Consensus 329 ~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~ 407 (494)
...+...++.++.|+++||+|||+.++.+.++..++.++..+.. +.+.+++. .++.|++.+.
T Consensus 62 ~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~l~G~~~~~ 124 (455)
T TIGR00892 62 IMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSS-----------------NVIELYLTAGFITGLGLAF 124 (455)
T ss_pred HHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHhcchh
Confidence 34455677788899999999999999988888888777766653 23444333 3566777776
Q ss_pred hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 408 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
..+...+++.+.++ ++|+++.|+.+....++..++|.+.+.+.+..| +...|.+.+++.+++.+..++.
T Consensus 125 ~~~~~~~~~~~~~~---~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g--wr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 125 NFQPSLTMLGKYFY---RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG--WRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred hhhHHHHHHHHHHH---hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHh
Confidence 55566677778774 678999999999999999999999999999877 7778888777766655544443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.6e-09 Score=99.75 Aligned_cols=198 Identities=13% Similarity=0.093 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHh----hhc
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR----KWG 349 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~g 349 (494)
+++..++...+..++++.....+.++|+.+ .+.++ ...........+..++..++.|+++| |+|
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~~--lg~~~----------~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~G 71 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYVQE--LGIPH----------AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFG 71 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCH----------HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCC
Confidence 344455555555667777777777777642 22211 12224455567888999999999999 599
Q ss_pred chHHHHHH-HHHHHHHHHHHHHHHHhhhhccccCCCCCCCc---hHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCC
Q 011056 350 AGFIWGIS-NILMALCFLAMLILYYVAIHMDYRGHDLPPNG---IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 425 (494)
Q Consensus 350 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 425 (494)
|||.++.+ .....+++.++.+......... ....... ..+..++...+..++.....+...+++.|.+|++.|
T Consensus 72 RRrp~il~g~~~~~~~l~ll~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~ 148 (477)
T TIGR01301 72 RRRPFIAAGAALVAFAVILIGFAADIGHLFG---DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR 148 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCchhhhhcc---ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH
Confidence 99998764 5555566666555421000000 0000000 112333344455567777777778999999998434
Q ss_pred CcchhhhHHHHHHHHHHHHHhhhhhhh--hhhcC-----------CCCcchHHHHHHHHHHHHHHHhhcccCCC
Q 011056 426 GQGLSLGVLNLAIVIPQIVVSMGSGPW--DQLFG-----------GGNSPAFAVGGISALAGGLIAILAIPRSS 486 (494)
Q Consensus 426 ~~g~~~g~~~~~~~~g~~l~~~~~g~l--~~~~g-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 486 (494)
+++.++++.+....+|+.+|+.+++.. .+.++ .+....|.+.+++.+++.++..+..||.+
T Consensus 149 ~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 149 RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 457899999999999999999998865 22211 13455688888888888888888777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-08 Score=98.02 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhhh-----cchHHH-HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhh
Q 011056 336 ITSVLMEKLCRKW-----GAGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 409 (494)
Q Consensus 336 i~~~~~g~l~dr~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 409 (494)
+..++.+.++||+ |||+.+ ..+.+..+++...+.+.. | ..+.+.+.+...+.+++.+...
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~-------------~-~~~l~~l~~~~~l~~~~~a~~~ 125 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE-------------P-GTQLRWLAALAVVIAFCSASQD 125 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC-------------C-cchHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999 999875 466666666666665542 2 1245556666777788888777
Q ss_pred hchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh-hcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 410 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ-LFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~-~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
+...++..|.+|+ ++||++.++......+|..+++.+.+.+.+ ..| +...|.+.+++.++..+..++ .||+
T Consensus 126 i~~~a~~~~~~~~--~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G--Wr~~f~i~a~l~ll~~l~~~~-~~e~ 197 (491)
T PRK11010 126 IVFDAWKTDVLPA--EERGAGAAISVLGYRLAMLVSGGLALWLADRYLG--WQGMYWLMAALLIPCIIATLL-APEP 197 (491)
T ss_pred HHHHHHHHHhcCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--HHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 8888999999998 899999999999999999999999999988 345 677787777776666555444 3443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=111.82 Aligned_cols=139 Identities=14% Similarity=0.015 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH--HHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHh
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL--MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILG 402 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 402 (494)
+....+.+..++.+++.|+++||+|||+++.....+ .......+.+.. + +.+.++++.++.|
T Consensus 56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~-------------~---s~~~l~~~~~l~g 119 (1140)
T PRK06814 56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL-------------N---SVPLLFAALFLMG 119 (1140)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH-------------h---hHHHHHHHHHHHH
Confidence 334456677889999999999999999976432222 111111222221 1 4777888899999
Q ss_pred hHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcc
Q 011056 403 GPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 482 (494)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (494)
++.+...+...+++.+.+|+ ++++.++|+.++...+|..+||.++|++.+..+ +...|....++.+++ ++..+..
T Consensus 120 i~~a~~~p~~~a~l~~~~~~--~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~--~~~~~~~~~~~~~~~-~~~~~~~ 194 (1140)
T PRK06814 120 IHSALFGPIKYSILPDHLNK--DELLGANALVEAGTFIAILLGTIIGGLATISGN--FVILVALLMGIAVLG-WLASLFI 194 (1140)
T ss_pred HHHHhhchHHHHhhHhhcCc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHH-HHHHhhC
Confidence 99999999999999999999 899999999999999999999999999998766 444553333333333 3333333
Q ss_pred cC
Q 011056 483 PR 484 (494)
Q Consensus 483 ~~ 484 (494)
++
T Consensus 195 ~~ 196 (1140)
T PRK06814 195 PK 196 (1140)
T ss_pred CC
Confidence 43
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=104.15 Aligned_cols=137 Identities=15% Similarity=0.029 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
...+.++..+++++.|++.||+|+|+.+..+.++.+++.++..+.. .. +.+.+++..++.|++.+
T Consensus 82 ~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-------------~~--~~~~l~~~r~~~G~~~~ 146 (465)
T TIGR00894 82 LSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-------------GG--GIALVVFCRVIQGLAQG 146 (465)
T ss_pred HHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-------------Hc--CchHHHHHHHHHHHhcc
Confidence 4456778899999999999999999999988888777766654431 00 24556777888899999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc-CCCCcchHHHHHHHHHHHHHHHhhcc
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF-GGGNSPAFAVGGISALAGGLIAILAI 482 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~-g~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (494)
...+....++.|.+|+ ++|++++|+.+....+|..+++.+.+.+.+.. | +...|.+.++..++..++.+...
T Consensus 147 ~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g--w~~~f~i~~~~~~~~~~~~~~~~ 219 (465)
T TIGR00894 147 SVSPATHKIIVKWAPP--KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG--WPMIFYVFGIVGCAWSLLWFVFP 219 (465)
T ss_pred cchhhHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCeehhhhhHHHHHHHHHHHHHh
Confidence 9999999999999998 99999999999999999999999999998874 5 67778777776666555544443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3e-08 Score=96.70 Aligned_cols=134 Identities=16% Similarity=0.074 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhh
Q 011056 330 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 409 (494)
Q Consensus 330 ~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 409 (494)
..++..+++++.|++.||+|||+.+..+..+.+++.+...+....... ...+...+++.-++.|++.+...
T Consensus 72 ~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~R~l~G~g~g~~~ 142 (432)
T PRK10406 72 GFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETI---------GTWAPALLLLARLFQGLSVGGEY 142 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhH---------HHHHHHHHHHHHHHHHhhhhhhH
Confidence 345566999999999999999999999999998888887765200000 00023456677888999999999
Q ss_pred hchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc------CCCCcchHHHHHHHHHHH
Q 011056 410 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF------GGGNSPAFAVGGISALAG 474 (494)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~------g~~~~~~~~~~~~~~~i~ 474 (494)
+...+++.|..|+ ++||.+.++.+.....|..+++.+...+.... ..++...|.+.++..++.
T Consensus 143 ~~~~~~i~e~~p~--~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 143 GTSATYMSEVAVE--GRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred hhHHHHHHHhCCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999999998 89999999888887788777777655443211 123666777766655544
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-08 Score=92.34 Aligned_cols=133 Identities=8% Similarity=-0.075 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
...+.....+..++.|++.||+|.|+++..+.+..++..++..+.+ +...+.+.-+++|++.+
T Consensus 68 ~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-----------------Sl~~L~i~R~llGvaEA 130 (511)
T TIGR00806 68 IPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-----------------SVWHMQLMEVFYSVTMA 130 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 4445677889999999999999999999999999999999888875 57888999999999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcch-HHHHHHHHHHHHHHHhh
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPA-FAVGGISALAGGLIAIL 480 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~-~~~~~~~~~i~~~~~~~ 480 (494)
... ....++...+|+ ++|+++.|+.+....+|.++++.+++. ...+|+..+.. .++......++.++.++
T Consensus 131 ~~~-A~~syI~~WfP~--kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 131 ARI-AYSSYIFSLVPP--SRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHH-HHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 998 889999999999 999999999999999999999999999 44556433333 33444444444444444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-09 Score=97.53 Aligned_cols=188 Identities=12% Similarity=0.124 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh-cch
Q 011056 273 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAG 351 (494)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~~ 351 (494)
||.++.+...-+.--++++++-.-+..|+..+.-+. .+++...+.+. ...++...-...+++||++||+ |+|
T Consensus 20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-----Lg~~~~~A~~l--~~~y~slVY~t~i~GG~laDr~LG~~ 92 (498)
T COG3104 20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-----LGFDETHATGL--FSAYGSLVYLTPIIGGWLADRVLGTR 92 (498)
T ss_pred CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-----CCcChHhhHHH--HHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 456666666665555666665554555554332111 12333322222 2223333457778899999998 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhh
Q 011056 352 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 431 (494)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 431 (494)
+.+..+.++++++.+++...+ ......+.+.+.+.++|.|..-+...+++.|+.|+++.+|-..+
T Consensus 93 ~tI~lGail~~iGh~~L~~~~---------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gF 157 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISS---------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGF 157 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccc---------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCc
Confidence 999999999999999887651 01345677777888899999999999999999998755677778
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 432 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 432 g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
+++.+..++|+.++|.+.+++.+..| +...|...++-+.++.+..+..++.
T Consensus 158 t~fY~~iNiGsl~~p~i~~~~~~~~g--~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 158 TLFYMGINIGSLIAPIITGLLAINYG--WHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred cEEEEEeehHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHccch
Confidence 88888899999999999999999988 7788988888888888777665543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-08 Score=97.04 Aligned_cols=130 Identities=12% Similarity=0.108 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCch-----HHHHHHHHHHHhh
Q 011056 329 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGI-----VIAALIIFTILGG 403 (494)
Q Consensus 329 ~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~ 403 (494)
...++..+++++.|++.||+|||+++..+.++.+++.++..+.+ +... +..+++.-++.|+
T Consensus 65 ~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~--------------~~~~~g~~a~~~l~~~R~l~G~ 130 (490)
T PRK10642 65 VPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIP--------------SYATIGIWAPILLLLCKMAQGF 130 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcc--------------cHHHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999998887763 2000 1235667788899
Q ss_pred HhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc------CCCCcchHHHHHHHHHHH
Q 011056 404 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF------GGGNSPAFAVGGISALAG 474 (494)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~------g~~~~~~~~~~~~~~~i~ 474 (494)
+.+...+...+++.|.+|+ ++||...++......+|..+++.+...+.... ..++...|++.+...+++
T Consensus 131 g~g~~~~~~~~~~~e~~p~--~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~ 205 (490)
T PRK10642 131 SVGGEYTGASIFVAEYSPD--RKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG 205 (490)
T ss_pred HhHhhHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH
Confidence 9999999999999999998 89999999988888888888776655443211 122566677765544443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-08 Score=96.69 Aligned_cols=128 Identities=8% Similarity=0.002 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCc-----hHHHHHHHHHHHhhH
Q 011056 330 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNG-----IVIAALIIFTILGGP 404 (494)
Q Consensus 330 ~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~ 404 (494)
..+...+++++.|++.||+|||+.+..+.++.+++.++..+.+ +.. ..+.+++.-.+.|++
T Consensus 73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~R~l~G~~ 138 (438)
T PRK09952 73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLP--------------SFSTIGWWAPVLLVTLRAIQGFA 138 (438)
T ss_pred HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCC--------------cHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455678889999999999999999999999999888877762 200 012455667788999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC------CCCcchHHHHHHHHHH
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG------GGNSPAFAVGGISALA 473 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g------~~~~~~~~~~~~~~~i 473 (494)
.+...+....++.|..|+ ++||...+..+....+|..+++.+...+....+ .++...|.+.++..++
T Consensus 139 ~g~~~~~~~~~~~e~~p~--~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 139 VGGEWGGAALLAVESAPK--NKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred hcccHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 998888888999999998 889999998888888888888777666553211 1255667666555443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-08 Score=97.45 Aligned_cols=151 Identities=16% Similarity=0.079 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++..+++++.|+++||+|||+++..+.++..++.+...+......... .++......+++.-++.|++
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~R~l~G~~ 133 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIG-----PDNTGYVPEFVIYRIIGGIG 133 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhcccccccc-----ccchhHHHHHHHHHHHHhhh
Confidence 3445567888999999999999999999999998888777666554210000000 01111244556777889999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh--------hcCCCCcchHHHHHHHHHHHHH
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ--------LFGGGNSPAFAVGGISALAGGL 476 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~--------~~g~~~~~~~~~~~~~~~i~~~ 476 (494)
.+...+...+++.|.+|+ ++||+++++.+....+|..+++.+.+.+.. ..| ++..|.+.++..++..+
T Consensus 134 ~g~~~~~~~~~i~e~~~~--~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g--Wr~~f~~~~~~~~~~~~ 209 (479)
T PRK10077 134 VGLASMLSPMYIAEIAPA--HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG--WRYMFASEAIPALLFLM 209 (479)
T ss_pred HhHHhhHHHHHHHhhCCh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC--hHHHHHHHHHHHHHHHH
Confidence 999999999999999999 899999999999999999998877655432 223 55567666666555544
Q ss_pred HHhhcccCC
Q 011056 477 IAILAIPRS 485 (494)
Q Consensus 477 ~~~~~~~~~ 485 (494)
. .++.||+
T Consensus 210 ~-~~~l~~s 217 (479)
T PRK10077 210 L-LYFVPET 217 (479)
T ss_pred H-HHcCCCC
Confidence 3 3445554
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.9e-08 Score=92.46 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhh-----cchH-HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhh
Q 011056 335 GITSVLMEKLCRKW-----GAGF-IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 408 (494)
Q Consensus 335 ~i~~~~~g~l~dr~-----g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 408 (494)
.+..++.|+++||+ |||| .+..+..+.++++..+.+. +...+.+.+.+..++.++..+..
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~--------------~~~~~~~~l~~~~~~~~~~~~~~ 111 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC--------------PPHAALWPLAGLAVLVAFLSASQ 111 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc--------------CccchHHHHHHHHHHHHHHHHHH
Confidence 58889999999999 7776 5667777777777766554 21113455555555667777777
Q ss_pred hhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc-CCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 409 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF-GGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
.+...+++.|.+|+ ++|+++.++......+|..+++.+.+.+.+.. | +...|.+.++..++..+.. +..||+
T Consensus 112 ~~~~~al~~~~~~~--~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g--w~~~f~i~a~~~l~~~l~~-~~~~e~ 184 (402)
T PRK11902 112 DIVFDAYSTDVLHP--EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG--WGNTYLLMAGLMLAGALTT-LWAPEP 184 (402)
T ss_pred HHHHHHHHHHhcCh--hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC--HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 78888999999998 88999999999999999999999999888853 4 6667777776666554443 333443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=99.20 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=105.6
Q ss_pred HHHhHHHHHHHhCCCc--------hhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhc
Q 011056 50 QLSLLTPYVQELGIPH--------AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121 (494)
Q Consensus 50 ~~~~l~~~~~~~g~s~--------~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~ 121 (494)
...+.+.+.++.|.++ ++.+.+.++..+...++.++.|+++| |+||||.++. +.+...++.......
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~d----r~g~r~~l~~-~~~~~~v~~~l~~~~ 301 (418)
T TIGR00889 227 TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLK----RFGIKKVMLL-SLVAWALRFGFFAYG 301 (418)
T ss_pred HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHH-HHHHHHHHHHHHHHc
Confidence 3356677777777553 56799999999999999999999999 9999887665 555656555555443
Q ss_pred cc-cccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHH-HHHHHHHHHHhhhcccccccccch
Q 011056 122 AD-IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFS-LFMAVGNILGYATGSFSGWFKILP 196 (494)
Q Consensus 122 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~-~~~~~g~~~g~~~g~~~~~~~~~~ 196 (494)
.+ .... ........+.+++.+........... ++++|++ ..++.+ ...++|..+|+.+++.+ ..
T Consensus 302 ~~~~~~~-----~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~-~~g~~~~~~~~lg~~iGp~l~G~l-----~~ 370 (418)
T TIGR00889 302 DPEYFGY-----ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRAS-AQGLFTLMCNGFGSLLGYILSGVM-----VE 370 (418)
T ss_pred CcchhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHH-----HH
Confidence 21 1000 00000111222222222222222222 6677777 999986 56789999999998863 22
Q ss_pred hhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 011056 197 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLG 238 (494)
Q Consensus 197 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~ 238 (494)
.... ....+|+..|.+.++..+++.++.+++.||+.+.
T Consensus 371 ~~g~----~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 371 KMFA----YGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred Hhcc----ccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 1100 0001689999988888888888888888887543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-06 Score=79.46 Aligned_cols=336 Identities=13% Similarity=0.132 Sum_probs=178.1
Q ss_pred HhHHHHHHH--hCCCchhHH-HHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccccccc
Q 011056 52 SLLTPYVQE--LGIPHAWAS-IIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (494)
Q Consensus 52 ~~l~~~~~~--~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 128 (494)
+++.+|..+ .|++..++. -+.-+..-.+.....+...+.| ..|. |+.++.+.+..++...++.+.+++.
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd----~l~Y-kpviil~~~~~i~t~~lll~~~sv~--- 95 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTD----YLRY-KPVIILQALSYIITWLLLLFGTSVL--- 95 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHHHHHHHHHCcHH---
Confidence 466666633 788888764 3444444556667778889999 8877 4555556666666777776777762
Q ss_pred CCCCCCcchHHHHHHHHHHhh---cccccc-ccc-cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccc
Q 011056 129 GDRGDFRPRAIAVFVFGFWIL---DVANNM-TQG-KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSAC 203 (494)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~-~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~ 203 (494)
.+-+.=+..+.. ..++.. ... .|+++-+++.+......-+|..++.++|..+.. +..
T Consensus 96 ---------~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs---~~~------ 157 (412)
T PF01770_consen 96 ---------AMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS---FGG------ 157 (412)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcC------
Confidence 222222222221 222211 122 333443348888888888888888888765211 111
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCC---CC--------CCCCC---C-cccc---cc----chhhhhhH
Q 011056 204 NVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS---HD--------QSAPF---S-EEGH---EQ----SSDVHEAF 261 (494)
Q Consensus 204 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~---~~--------~~~~~---~-~~~~---~~----~~~~~~~~ 261 (494)
.+++...++......+..++.++ +|.+++.. ++ +.+.+ + +++. ++ .....+..
T Consensus 158 ----~sy~~L~~isl~~~~~a~~~~~f-LP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (412)
T PF01770_consen 158 ----VSYFQLNYISLASVSLALLIALF-LPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSV 232 (412)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHH-cCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHH
Confidence 14566666655544444444433 44433210 00 00000 0 0000 00 00111122
Q ss_pred ----HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHH
Q 011056 262 ----LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 337 (494)
Q Consensus 262 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 337 (494)
.+++++..++ +.++...+...+...++.-...|...... ++ . .+.....|+-. + -....+.+.++
T Consensus 233 l~~l~~~~~~~y~~--~~ll~WSlWWa~atcgy~qv~nYvQ~LW~-~v-~-~~~~~~vYNG~-----V-eA~~tllgA~~ 301 (412)
T PF01770_consen 233 LRLLWKDFKSCYSN--PRLLLWSLWWAFATCGYYQVINYVQSLWD-TV-P-PSDNESVYNGA-----V-EAASTLLGAIA 301 (412)
T ss_pred HHHHHHHHHHHhcC--chHHHHHHHHHHHHhHHHHHHHHHHHHHH-hc-C-CCCCCcccchH-----H-HHHHHHHHHHH
Confidence 2344444445 55555555555555555555555443332 22 1 11111233222 2 22234456667
Q ss_pred HHHHHHHHhhhcchHHHH--HHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhh
Q 011056 338 SVLMEKLCRKWGAGFIWG--ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 415 (494)
Q Consensus 338 ~~~~g~l~dr~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 415 (494)
++..|++..+..+..-+. ....+.+.+++++...+ +.+...+..++++..+....++...-
T Consensus 302 al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~-----------------~Iwv~Y~~yIif~~~y~fliTiA~~q 364 (412)
T PF01770_consen 302 ALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTG-----------------NIWVCYAGYIIFRSLYMFLITIASFQ 364 (412)
T ss_pred HHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788755554433333 23334444455555543 57888888888888888887777777
Q ss_pred HhhhcccCCCCcchhhhHHHHHHHHHHHHHhhh
Q 011056 416 VSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMG 448 (494)
Q Consensus 416 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~ 448 (494)
++....+ +.-|..+|+.++...+-+.+-..+
T Consensus 365 IA~~l~~--e~yaLVFGiNtf~Al~LQtilT~i 395 (412)
T PF01770_consen 365 IAKNLSE--ERYALVFGINTFVALVLQTILTLI 395 (412)
T ss_pred HHHhccc--cceeeeeeeHHHHHHHHHHheEEE
Confidence 7777777 888999998877666555544433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.8e-08 Score=93.40 Aligned_cols=128 Identities=20% Similarity=0.183 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......+...+++++.|++.||+|||+.+..+.++..++.+.. .. + +.+.+++...+.|++
T Consensus 39 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--------------~---~~~~l~~~~~~~g~g 100 (355)
T TIGR00896 39 LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--------------P---GTALLFAGTALIGVG 100 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--------------c---cHHHHHHHHHHHHHH
Confidence 34455677889999999999999999999988887776666554 32 1 355566677778888
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHH
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALA 473 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i 473 (494)
.+...+.....+.|..| ++++++.++.+....+|..+++.+.+.+.+..+..+...|...++..++
T Consensus 101 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 101 IAIINVLLPSLIKRDFP---QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred HHHHhccchHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 88766666677777665 6789999999999999999999999988876542234445444443333
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-07 Score=91.46 Aligned_cols=113 Identities=12% Similarity=-0.102 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+....+.++..+++++.|++.||+|||+++..+..+.+++.++...... . + +.+.+++..++.|++
T Consensus 65 l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~---a--------~---~~~~ll~~r~l~G~g 130 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---I--------M---NYTLFLVGLFIIAAG 130 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh---c--------C---CHHHHHHHHHHHHHH
Confidence 3345577888999999999999999999999999999888876532210 0 1 467777888899999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhh
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD 453 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~ 453 (494)
.+...+....++.|..|+ ++++..+++.+....+|..+++.+++.+.
T Consensus 131 ~g~~~~~~~~~v~~~~~~--~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 131 LGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHhhHHHHHHHhCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888887555 55556788999999999999999887654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-08 Score=100.53 Aligned_cols=135 Identities=9% Similarity=-0.006 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++.++++++.|+++||+|||+++.++.++.+++.++..+.. +.+.+++..++.|++
T Consensus 131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~r~l~G~~ 193 (505)
T TIGR00898 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP-----------------NYTVFLVFRLLVGMG 193 (505)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc-----------------cHHHHHHHHHHHHhh
Confidence 445556788899999999999999999999999888888877776652 467778888899999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+...+....++.|.+|+ ++|+.+.++......+|..+++.+++.+.+ +...+.+.++..++..+.. ++.||
T Consensus 194 ~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----wr~~~~~~~i~~~~~~~~~-~~~~e 265 (505)
T TIGR00898 194 IGGIWVQAVVLNTEFLPK--KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-----WRWLQLAVSLPTFLFFLLS-WFVPE 265 (505)
T ss_pred ccchHHHHHHHhheecCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHH-HhcCC
Confidence 999899999999999998 899999999999999999999988766654 3445666666555555444 34444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.8e-08 Score=93.80 Aligned_cols=104 Identities=7% Similarity=-0.028 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCch-----HHHHHHHHHHHhhHhhhh
Q 011056 334 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGI-----VIAALIIFTILGGPLAIT 408 (494)
Q Consensus 334 ~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~ 408 (494)
..+++++.|++.||+|||+.+..+..+..++.++..+.+ +... ...+++.-++.|++.+..
T Consensus 69 ~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~--------------~~~~~~~~~~~~l~~~R~l~G~~~g~~ 134 (434)
T PRK15075 69 RPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVP--------------GYATIGLAAPLLVLLGRLLQGFSAGVE 134 (434)
T ss_pred hhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCC--------------cHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 357789999999999999999999999888888877662 1000 113456677888888887
Q ss_pred hhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhh
Q 011056 409 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD 453 (494)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~ 453 (494)
.+....+++|.+|+ ++||++.++.+....++..+++.+++.+.
T Consensus 135 ~~~~~~~~~e~~p~--~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 135 LGGVSVYLAEIATP--GRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred HHHHHHHHHhhCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778899999999 99999999999888888888887777653
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=89.98 Aligned_cols=161 Identities=16% Similarity=0.055 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH-HHH
Q 011056 282 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGIS-NIL 360 (494)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~-~~~ 360 (494)
.++..+.+......+.+.++.+ ++.+. ....+......+...+++++.+++.||+||++...-. .+.
T Consensus 12 ~~~~~~~~~g~~~p~l~~~l~~--~g~s~----------~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~ 79 (382)
T PRK11128 12 SYFGYFFAYGVFLPFWSVWLKG--QGYTP----------ETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALL 79 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHh--cCCCH----------HHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHH
Confidence 3444445555666677777743 22221 1112334456777888999999999999984322111 111
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHH
Q 011056 361 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVI 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 440 (494)
..+....+.... + +.+.+++...+.+++.+...+...++..+. . ++++.+.+.......+
T Consensus 80 ~~~~~~~~~~~~-------------~---~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~---~~~~~a~~~~~~~~~l 139 (382)
T PRK11128 80 TLLFAVAFWFGA-------------H---SFWLLFVAIGLFNLFFSPLVPLTDALANTW-Q---KQIGLDYGKVRLWGSI 139 (382)
T ss_pred HHHHHHHHHHhc-------------c---cHHHHHHHHHHHHHHHcccccHHHHHHHHH-H---hhccCCcchHHHHHHH
Confidence 111111111111 1 456666666777877777777666666654 2 4567888888888999
Q ss_pred HHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHH
Q 011056 441 PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGL 476 (494)
Q Consensus 441 g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~ 476 (494)
|..+||.+++.+.+.+| +...|++.++..++..+
T Consensus 140 g~~igp~lgg~l~~~~g--~~~~f~~~~~~~~~~~~ 173 (382)
T PRK11128 140 AFVIGSALTGKLVSWFG--EQAILWILTAGVASMLL 173 (382)
T ss_pred HHHHHHHHHHHHHHHcC--hhHHHHHHHHHHHHHHH
Confidence 99999999999999887 56667666554444433
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.7e-08 Score=90.96 Aligned_cols=132 Identities=11% Similarity=-0.023 Sum_probs=95.5
Q ss_pred HHHHHHHHhhh-----cchHHH-HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhc
Q 011056 338 SVLMEKLCRKW-----GAGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 411 (494)
Q Consensus 338 ~~~~g~l~dr~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 411 (494)
.++.|+++||+ ||||.+ ..+.++.++++..+.+. ++..+.+.+....++.+++.+...+.
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~--------------~~~~~l~~l~~~~~~~~~~~~~~~~~ 103 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL--------------VPSTDLPLLAGLAFLIAFFSATQDIA 103 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC--------------CcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998 888875 45666666665555544 21123444555555666667766777
Q ss_pred hhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCC------CCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 412 PYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGG------GNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 412 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~------~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
..+++.|.+|+ ++|+.+.|+......+|..+++.+++.+.+..|. ++...|.+.+++.++..+..++..||.
T Consensus 104 ~~a~~~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 104 LDAWRLEILSD--EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHhCCH--hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 88899999988 8999999999999999999999999998887652 145567777776666655555444553
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.4e-08 Score=96.80 Aligned_cols=117 Identities=12% Similarity=0.010 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++.+++.++.+++.||+|||+.+..+.++..++.++..+.. +. ....+.+.+++..++.|++
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~----~~-------~~~~~~~~~~~~r~l~G~~ 128 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP----GS-------SPKSVMATLCFWRFWLGVG 128 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc----Cc-------ccchHHHHHHHHHHHHHHH
Confidence 334456777899999999999999999999988888888777666542 00 0001245677888899999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 454 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~ 454 (494)
.+...+....+++|.+|+ ++||++.++.+....+|..+++.+...+..
T Consensus 129 ~g~~~~~~~~~~~e~~p~--~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~ 176 (502)
T TIGR00887 129 IGGDYPLSAIITSEFATK--KWRGAMMAAVFAMQGFGILAGAIVALIVLA 176 (502)
T ss_pred HhhhhHHHHHHHHHhcCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999988776543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-07 Score=92.64 Aligned_cols=132 Identities=10% Similarity=0.076 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....+...+..++.|+++|.+|||..++.+.++..++.++....+ +...++....+.|++.|
T Consensus 84 ~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-----------------~~~~~iag~~l~GvgaG 146 (599)
T PF06609_consen 84 STAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-----------------NMNTFIAGMVLYGVGAG 146 (599)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-----------------cHHHHHHHHHHHHHhhH
Confidence 3446677888889999999999999999999999999999877763 46677888889999877
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
... .....++|..|. |.|+...++...........+|.++..+.... ++.+.|++..+...++.+..++
T Consensus 147 ~~~-~~~~~isEl~p~--k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~--~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 147 VQE-LAALAISELVPN--KWRGLGLAIASIPFIITTWISPLIAQLFAAHS--GWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHH-HHHHHHHHhccc--chhhhHhHHHHHHHHhhhcccHHHHHHhccCC--CcchHHHHHHHHHHHHHHHHHH
Confidence 665 445568999998 88887777666554444445666655554433 3677777777766666554443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-07 Score=88.06 Aligned_cols=160 Identities=15% Similarity=0.017 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Q 011056 277 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI 356 (494)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~ 356 (494)
+.+...++..+.+......|.+.++.+ ++.+. ....+......+...+++++.+.++||.||+.....
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~--~g~s~----------~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 74 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKG--IGLGE----------EMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALR 74 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 334455555566666666777888753 22211 111223334567778889999999999998544322
Q ss_pred HHHHH-HHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHH
Q 011056 357 SNILM-ALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLN 435 (494)
Q Consensus 357 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 435 (494)
...+. .+..+.+.... + +.+.+++...+.+.+.+...+...++..+. + +++++.+|...
T Consensus 75 ~~~~~~~l~~~~~~~~~-------------~---~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~--~~~~~~~g~~~ 134 (382)
T TIGR00902 75 LLALASAIFAAAFSAGA-------------H---NAWLLFIAIGLFALFFSAGMPIGDALANTW--Q--KQFGLDYGKVR 134 (382)
T ss_pred HHHHHHHHHHHHHHHhh-------------h---hHHHHHHHHHHHHHHHccchhHHHHHHHHH--H--HHcCCCccHHH
Confidence 21111 11111111111 1 356666666667777776667766665542 3 67899999999
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHH
Q 011056 436 LAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGIS 470 (494)
Q Consensus 436 ~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~ 470 (494)
....+|..++|.++|.+.+..| +...|.+....
T Consensus 135 ~~~slG~~~g~~l~g~l~~~~g--~~~~f~~~~~~ 167 (382)
T TIGR00902 135 LIGSAAFIIGSALFGGLIGMFD--EQNILAILTAG 167 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--hhHHHHHHHHH
Confidence 9999999999999999999987 55566555444
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.6e-05 Score=72.56 Aligned_cols=111 Identities=12% Similarity=-0.039 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC-CCchHHHHHHHHHHHhhHhh
Q 011056 328 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLP-PNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 328 ~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~ 406 (494)
...++.++.+.++.+++.+|+|..|.-.++......+..+-...-+...+ | +..+...++....+--+|.=
T Consensus 300 ~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~--------~~~~~s~~~l~~gi~~SR~GLW 371 (432)
T PF06963_consen 300 GLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGS--------PFSSISAYLLLGGIALSRIGLW 371 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCC--------CchhhHHHHHHHHHHHHHHHHH
Confidence 44677789999999999999999998887777665544433222111000 1 11133334444444445554
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhh
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMG 448 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~ 448 (494)
.+--....+++|.+|+ ++||+..|+-+..+++...+.-.+
T Consensus 372 ~fDL~~~qi~Qe~V~~--~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 372 SFDLAVTQIMQENVPE--SERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hhhHHHHHhhcccCCH--HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4445666788899998 999999999988888877664443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-07 Score=86.19 Aligned_cols=139 Identities=17% Similarity=0.100 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
..+..+.+.+.+++.|.+.||+|.|+...++.++..+-.+.+.+.. ...+.+.+++.-.+.|++-+
T Consensus 55 ~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~--------------~~~~~~~ll~~gll~G~~Ga 120 (417)
T COG2223 55 VAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAV--------------TYPSTWQLLVIGLLLGLAGA 120 (417)
T ss_pred HHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHc--------------cCCchHHHHHHHHHHhcccc
Confidence 3345677888899999999999999999999999888888887773 11134567777777777655
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCC-CcchHHHHHHHHHHHHHHHhhccc
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGG-NSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~-~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
. +.+....+++.+|+ +++|.++|+.. .+++|..+...+...+....|.. .+.+..+.....++..+..++..+
T Consensus 121 s-Fav~m~~~s~~fP~--~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 121 S-FAVGMPNASFFFPK--EKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred e-ehcccccccccCCh--hhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4 45777889999999 99999999988 89999998888888888876621 233334444455555555555443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.2e-07 Score=78.38 Aligned_cols=118 Identities=11% Similarity=0.100 Sum_probs=90.4
Q ss_pred HHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcc
Q 011056 57 YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRP 136 (494)
Q Consensus 57 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (494)
+.+.+|+|+...+-+.+......++..|+.|.++| |+|++-.++..+.+....+-....++. ...+
T Consensus 291 F~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~D----k~G~n~~wv~~a~~~tl~~H~~l~Ft~----------lsPy 356 (459)
T KOG4686|consen 291 FQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISD----KYGFNLWWVASACILTLLGHSGLFFTF----------LSPY 356 (459)
T ss_pred HHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHh----hhcceehhHHHHHHHHHHHhhhHHhhh----------ccHH
Confidence 45789999999999999999999999999999999 999988888877777777666554431 2223
Q ss_pred hHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccc
Q 011056 137 RAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFS 189 (494)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~ 189 (494)
..+.+.++.......+.-...+ +|++-+. ++|..+...++|..+.+++.+++
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE~qLGT-aygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPEEQLGT-AYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcc-hHHHHHHHHhhhhhHHhhhhhee
Confidence 4455555555555554444444 6666665 99999999999999999998873
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=91.60 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhc
Q 011056 332 VVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 411 (494)
Q Consensus 332 ~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 411 (494)
+...+++++.|+++||+|||+++..+.++..++.++..+....... .......+++..++.|++.+...+.
T Consensus 46 ~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~r~l~G~~~~~~~~~ 116 (394)
T TIGR00883 46 LARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATI---------GIWAPILLLLARLIQGFSLGGEWGG 116 (394)
T ss_pred HHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhh---------HHHHHHHHHHHHHHHHhhccccccc
Confidence 3446788999999999999999999999888888777665200000 0000123555667778888887888
Q ss_pred hhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC------CCCcchHHHHHHHHHHHH
Q 011056 412 PYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG------GGNSPAFAVGGISALAGG 475 (494)
Q Consensus 412 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g------~~~~~~~~~~~~~~~i~~ 475 (494)
...++.|..|+ ++|+...++.+....+|..+++.+.+.+....+ .++...+.+.+++.+++.
T Consensus 117 ~~~~~~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 117 AALYLAEYAPP--GKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred cHHHhhhcCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 88999999998 899999999999999999999988776543211 124445555555444443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.7e-07 Score=88.39 Aligned_cols=129 Identities=13% Similarity=0.056 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhh
Q 011056 336 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 415 (494)
Q Consensus 336 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 415 (494)
...++.|++.||+|+|+++.++.++..++.++.++.... .-..+.+.+.+...+.|++.+...+.....
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~-----------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~ 144 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE-----------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVT 144 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc-----------cccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999999999888775200 001146777778888888888777777778
Q ss_pred HhhhcccCCCCcchhhhHHHHHHHHHHHHH-hhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcc
Q 011056 416 VSIRTESLGLGQGLSLGVLNLAIVIPQIVV-SMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 482 (494)
Q Consensus 416 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~-~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (494)
+.+.+| ++||.+.|+......+|.++. ++..+.+.+. ....|++.+++.++.+++.+.+.
T Consensus 145 i~~~Fp---~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~----~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 145 VLSVFP---SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDN----TSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred HHHhCh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHhhe
Confidence 888887 678999999999999999864 4444443322 33455565665555555554443
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.2e-08 Score=97.23 Aligned_cols=127 Identities=11% Similarity=0.070 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-------------------CCC----
Q 011056 328 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR-------------------GHD---- 384 (494)
Q Consensus 328 ~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~---- 384 (494)
..+.++..+..++.+++.||.|||+.+.++.++.+++.+++.+.+...+..+.. ...
T Consensus 75 s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 154 (633)
T TIGR00805 75 GSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALR 154 (633)
T ss_pred ehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcc
Confidence 345667788889999999999999999999999999999887764322111000 000
Q ss_pred --------CCC---CchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhh
Q 011056 385 --------LPP---NGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD 453 (494)
Q Consensus 385 --------~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~ 453 (494)
... ......+++.-++.|++.+...+...+++.|.+|+ ++++.+.|+.+....+|..+|+.+++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~--~~~~~~~~i~~~~~~iG~~lG~llgg~l~ 232 (633)
T TIGR00805 155 PTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS--KNSPLYIGILESIAVFGPAFGYLLGSFCL 232 (633)
T ss_pred ccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc--cccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 000 00234566788899999999999999999999999 99999999999999999999999999988
Q ss_pred hhc
Q 011056 454 QLF 456 (494)
Q Consensus 454 ~~~ 456 (494)
+.+
T Consensus 233 ~~~ 235 (633)
T TIGR00805 233 QIY 235 (633)
T ss_pred hcc
Confidence 654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=90.44 Aligned_cols=140 Identities=16% Similarity=0.065 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+.......+.+++.+..+++.||+|.|+++..+.++.+++.++..+... . +.+.+++.-++.|++
T Consensus 77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-------------~--~~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-------------I--GFYLLLVLRFLQGLG 141 (466)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-------------h--cchhhHHHHHHhHHH
Confidence 4455567889999999999999999999999999999999988887741 1 245678889999999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhh-cCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL-FGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~-~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.+..++....+..+-.|+ ++|++..++......+|.+++-.++|.+.+. .| +...|++.+++.++-.++.+++..
T Consensus 142 ~g~~~pa~~~i~~~W~P~--~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G--W~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPP--NERSTFIAILTAGSQLGTIITMPVSGLLCESSLG--WPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HhHHHhhhhceeeeECCH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC--CchHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999 9999999999999999999999999999998 66 777888888888777666555443
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-05 Score=74.82 Aligned_cols=335 Identities=12% Similarity=0.015 Sum_probs=164.9
Q ss_pred HHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhcc
Q 011056 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV 151 (494)
Q Consensus 72 ~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (494)
.++-.....+.+++.+.+.| +.|.|..+.+ +......-...+.+.+++ .....-.+.++|..++..
T Consensus 56 ~aiiY~~ftv~~l~~psiv~----~i~~K~~lv~-ga~~y~~f~~gfl~~N~y---------~~yfssallG~Gaallw~ 121 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVN----FLGPKWALVI-GATCYAAFPLGFLFPNSY---------YLYFSSALLGFGAALLWT 121 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHH----HhhHHHHHHH-HhHHHHHHHHHHHhcchH---------HHHHHHHHhhhhHHheec
Confidence 45666677788888999999 9999876666 555555444444343332 111222344444444333
Q ss_pred ccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccchh-H----------HHHHH
Q 011056 152 ANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLK-S----------AFFLD 217 (494)
Q Consensus 152 ~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~f~~~ 217 (494)
+...... .++...+ ..++.-.....+.++|..+-... +-+... ........+ . ...+.
T Consensus 122 GqG~ylt~~st~~tie~-Nisi~Wai~~~~li~Ggi~l~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~ 193 (461)
T KOG3098|consen 122 GQGGYLTSNSTRETIER-NISIFWAIGQSSLIIGGIILFIY-----FQFSSS--SAIITDGTRRLVFEVLFIDFEIKVLF 193 (461)
T ss_pred ccceehhhcCChhhHHH-HHHHHHHHHHHHHHhhhHhheee-----eEeccc--ccccccchhhhhcchhhhhHHHHHHH
Confidence 3333333 3333333 66666666777777776553321 111000 000000110 0 11111
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhc
Q 011056 218 VIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFD 297 (494)
Q Consensus 218 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (494)
++......+...-...++.+....+. +.. +......++...+.+++ +++..+....+.............
T Consensus 194 ~v~~~~~~l~~i~~~~~p~~~~~~~~-------~~~-~~~~~~~l~~~~~l~~~--~~ml~L~~~f~~tG~~~Sf~~~iy 263 (461)
T KOG3098|consen 194 GVLLAISVLSIINFDFLPSKDVVNCK-------SSS-ETSFSELLKLTFKLLKT--PKMLLLFPFFFYTGLETSFWISIY 263 (461)
T ss_pred HHHHHHHHHHhhheeecCccchhhhh-------hhc-cccHHHHHHHHHHHhcC--HhHHHHHHHHHHHHHHHHHHHhcc
Confidence 11111111111111111111111000 000 01233445666677777 666666555555444333333334
Q ss_pred hhhhhhh-hcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh---hcchHHHHHHHHHHHHHHHHHHHHHH
Q 011056 298 TDWMGRE-IYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK---WGAGFIWGISNILMALCFLAMLILYY 373 (494)
Q Consensus 298 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr---~g~~~~~~~~~~~~~~~~~~~~~~~~ 373 (494)
|..+.-. ..+.+. . ....+.....+++.++++...+.+.|| +|+++...++..+-.+.+++......
T Consensus 264 pt~i~ft~~~~~n~----~-----~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p 334 (461)
T KOG3098|consen 264 PTCISFTRKLGSNT----T-----YLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFP 334 (461)
T ss_pred chhhhhhhhccCcc----h-----hHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcccc
Confidence 4433211 111111 0 111233344566677777777777765 47888887777776666665544321
Q ss_pred hhhhccc-cCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhh
Q 011056 374 VAIHMDY-RGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSG 450 (494)
Q Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g 450 (494)
...+.+. +..+...........+...+.|++-....+..+..+.+..| +++..+.++..+-..++..++-....
T Consensus 335 ~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~---~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 335 NDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP---DDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred ccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1110000 00001112245567778889999999999999999999996 67777777777776666655544433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-08 Score=81.59 Aligned_cols=134 Identities=24% Similarity=0.269 Sum_probs=84.3
Q ss_pred HHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhcc
Q 011056 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV 151 (494)
Q Consensus 72 ~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (494)
.+...++..++.++.|++.| |+||||.++. +.....++.+.....++... ......+.+++......
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d----~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~ 70 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTD----RFGRKPVLLV-GLFIFVLSTAMFALSSNITV--------LIIARFLQGFGAAFALV 70 (141)
T ss_pred EEeehhHHHHHHhhHHHHHh----hcchhHHHHH-HHHHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHHHHHH
Confidence 34566778889999999999 9999997766 55555556665556555411 11111222222222222
Q ss_pred ccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHH
Q 011056 152 ANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 228 (494)
Q Consensus 152 ~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 228 (494)
....... ++++|++ ..+.......+|..+++.+++.. ... .+|++.+.+.+....+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~-----~~~----------~~~~~~~~~~~~~~~~~~~~~ 134 (141)
T TIGR00880 71 AGAALIADIYPPEERGV-ALGLMSAGIALGPLLGPPLGGVL-----AQF----------LGWRAPFLFLAILALAAFILL 134 (141)
T ss_pred hHHHHHHHHCChhhhhH-HHHHHHHhHHHHHHHhHHhHHHH-----hcc----------cchHHHHHHHHHHHHHHHHHH
Confidence 2222222 5666776 99999999999999999887652 111 168888888877777666666
Q ss_pred hhcccC
Q 011056 229 ASAAHE 234 (494)
Q Consensus 229 ~~~~~e 234 (494)
.+..||
T Consensus 135 ~~~~~~ 140 (141)
T TIGR00880 135 AFLLPE 140 (141)
T ss_pred hhcCCC
Confidence 666555
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.4e-06 Score=74.28 Aligned_cols=384 Identities=14% Similarity=0.063 Sum_probs=173.6
Q ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccc-cCCCCCcchhHHH
Q 011056 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRC-TSRFGRRRPFIVC 106 (494)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~-~~r~Grr~~~l~~ 106 (494)
..++++..+.+.......-++... .+|.+.+.-|.|-++.+....++.= .-.-+++..+.|.. ..|+||||.|+.-
T Consensus 28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeee
Confidence 345566666666655555555554 7788888888888777765443321 12344555566632 2289999999875
Q ss_pred HHHHHHHHHHHHhhccccccccCCCCCCc--ch---HHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHH
Q 011056 107 GAISIAVAVLLIGLSADIGWLLGDRGDFR--PR---AIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVG 178 (494)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g 178 (494)
+... ++..+..++..+...+++..... .. .+.++.+.....+++...+.- .+++- |..+....+|
T Consensus 105 ~q~l--lG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~l-----gyaST~q~Vg 177 (510)
T KOG3574|consen 105 CQYL--LGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENL-----GYASTCQSVG 177 (510)
T ss_pred hHHH--HHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhc-----CchhHHHHHH
Confidence 5443 34444445544444444221111 11 111122222223455444433 23322 3334455555
Q ss_pred HHHHhhhcccccccccch--h----hhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccc
Q 011056 179 NILGYATGSFSGWFKILP--F----TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 252 (494)
Q Consensus 179 ~~~g~~~g~~~~~~~~~~--~----~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 252 (494)
.-.|+.++....+. +.+ + .-+...++-.-....-.+..+.+.++...+..+.-+|++...+++
T Consensus 178 ~~~GyfL~~~ifLa-L~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e---------- 246 (510)
T KOG3574|consen 178 QTAGYFLGNVVFLA-LESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEE---------- 246 (510)
T ss_pred HhhhHHhhcceeeE-ecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh----------
Confidence 55555554432110 000 0 000000000001112223334444455454545444544331111
Q ss_pred cchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHH
Q 011056 253 QSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 332 (494)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (494)
.+...+...+-+++.++- |..+.++.+....-+++.+--...+.-+.+. +.+. --+++. .+
T Consensus 247 -~~~~i~~~yk~l~~vLkl--k~v~~la~i~lt~K~gf~a~da~t~LkLle~--Gv~k------------e~Lal~--~v 307 (510)
T KOG3574|consen 247 -LELGIHESYKLLRDVLKL--KSVRWLAGILLTGKLGFQAADALTSLKLLEH--GVPK------------EELALI--AV 307 (510)
T ss_pred -hhcCHHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHhhhhhhccchHHHHc--CCCh------------hHheee--ee
Confidence 011122334444555555 6666666666555555555443333322221 1111 111111 13
Q ss_pred HHHHHHHHHHHHHhhh--cchHHHH--HHH---HHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHh
Q 011056 333 VLGITSVLMEKLCRKW--GAGFIWG--ISN---ILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL 405 (494)
Q Consensus 333 ~~~i~~~~~g~l~dr~--g~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 405 (494)
..++.++..+.+.-|+ |+|++.. -+. ++.+.+...+.+....-.+ .++ ..|. ......+....+.+...
T Consensus 308 ~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~--~~G-~~~~-~~~il~i~~y~~~~~~~ 383 (510)
T KOG3574|consen 308 PLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGH--SDG-TFPR-GYYILLITSYAFHQVFV 383 (510)
T ss_pred ehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhccccc--CCC-ceee-chHHHHHHHHHHhhhHH
Confidence 3444444455555444 3333321 111 1112222222222100000 000 0111 11222222233444444
Q ss_pred hhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 406 AITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
...+....+..+++.|+ ...|+.+.+.|....+|+---..+..++.|..+
T Consensus 384 ts~fv~~maf~aqisdp--~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 384 TSMFVSGMAFHAQISDP--AIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHHHHHHHHHhhcCCc--ccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 44444555667777887 899999999999999998888888888887653
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-06 Score=77.23 Aligned_cols=112 Identities=12% Similarity=-0.042 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
......+..+.++..+++.||+|.|+-++.+..+.++++.++.-.. ...+...++...++.+.|.+
T Consensus 54 qfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa--------------~~~~y~~FL~~lFila~Gi~ 119 (422)
T COG0738 54 QFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA--------------SSKSYGFFLVALFILASGIG 119 (422)
T ss_pred HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh--------------hhhhHHHHHHHHHHHHhhhH
Confidence 3445566788899999999999999999999999999999886542 11146677777888899999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 454 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~ 454 (494)
...+....++...-|+ +....-+.+.+.++.+|++++|.+++.+..
T Consensus 120 ~LetaaNp~v~~lg~~--~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 120 LLETAANPYVTLLGKP--ESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred HHHhccchHHHHhCCc--hhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999888 677778899999999999999999999887
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-05 Score=74.08 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhh
Q 011056 390 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD 453 (494)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~ 453 (494)
+.|..++.++.-|+.-|..+.-.+..+.|..|+ ++|..++|..+....+|-.++..++-++-
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~--~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPP--EDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 466677777788888888887778888888887 89999999999999998888887765443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-07 Score=89.73 Aligned_cols=141 Identities=13% Similarity=0.039 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......+++.+++++.|+++|++|||+.+.++.+...++.++..+.. +...+.+.-++.|+|
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-----------------~~~~l~~GR~l~G~g 155 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-----------------SWYQLIVGRILTGLG 155 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHhccc
Confidence 334456788899999999999999999999999999999999998884 578899999999999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.|....+...+.+|..|+ +.||...+..+....+|..++ .+.+...+....++...+.+..+.+++..+. .++.||
T Consensus 156 ~G~~~~~~piy~sEiap~--~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pe 231 (513)
T KOG0254|consen 156 VGGASVLAPVYISEIAPA--HIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPE 231 (513)
T ss_pred hhhhhhcchhhHhhcCCh--hhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCC
Confidence 999998899999999998 999999999999999888887 4444444332011334445555555555444 555565
Q ss_pred CC
Q 011056 485 SS 486 (494)
Q Consensus 485 ~~ 486 (494)
.+
T Consensus 232 sp 233 (513)
T KOG0254|consen 232 SP 233 (513)
T ss_pred Ch
Confidence 43
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.3e-07 Score=83.19 Aligned_cols=180 Identities=14% Similarity=0.134 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
+.++.+....++.++.+.....|.+.|+++.. +.+.. +.| .....+.+..++.+++.|.+.||.|.||-
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~---------GLs~~-~iG-~i~s~~~~~~l~~qp~~G~i~Dklg~kK~ 75 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVA---------GLSGT-EIG-IIFSAGSLFALLAQPVYGFISDKLGLKKH 75 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH-HHH-HHHHHHHHHHHHTHHHHHHHHHHCTTCSH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---------CCCHH-HHH-HHHHHHHHHHHHHHHhHHHhcchhhhhHH
Confidence 78888888888888888899999999997532 11111 222 33444677889999999999999996665
Q ss_pred HHHHHHHH--HHH-HHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchh
Q 011056 354 WGISNILM--ALC-FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLS 430 (494)
Q Consensus 354 ~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 430 (494)
++...... ..+ +....+....+.| .....++..+.+++.+....++.-+++.+ .. |+.+.-
T Consensus 76 Ll~~i~~l~~l~~pff~~v~~pll~~n------------~~lg~iig~i~l~~~f~~~~~~~Ea~~er-~s---r~~~fe 139 (412)
T PF01306_consen 76 LLWFIAILLLLFGPFFIYVFGPLLQSN------------FWLGAIIGGIYLGLVFNAGVPLSEAYAER-VS---RRNGFE 139 (412)
T ss_dssp HHHHHHHHHHTCHHHHHHTHHHHHHTT-------------HHHHHHTTTTTTTTTTTHHHHHHHHHHH-HH---HHHSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHcccchHHHHHHHH-HH---HHhcCC
Confidence 44332222 112 2222222111111 11122222233344444444444444333 22 556777
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 431 LGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 431 ~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
+|-..+.+++|.+++..++|.+.+.. ....|++..+..++..++.+..++
T Consensus 140 YG~~R~wGSig~ai~s~~~G~L~~i~---p~~~fwi~s~~~~il~lll~~~~~ 189 (412)
T PF01306_consen 140 YGRARMWGSIGFAIASLLAGILFNIN---PNIIFWIASAAAIILLLLLLLLKP 189 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHSS--
T ss_pred cchHHHHhhHHHHHHHHHhheeeeeC---ccHHHHHHHHHHHHHHHHHHHcCC
Confidence 88899999999999999999999853 355677666665555555555543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-06 Score=73.36 Aligned_cols=363 Identities=12% Similarity=0.075 Sum_probs=168.5
Q ss_pred HHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCC
Q 011056 51 LSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD 130 (494)
Q Consensus 51 ~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (494)
.+++-+..+.+|....++|.+.-+......+...+.|.++| |.||||..+.. .+..+++++-= .++.+-
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaD----kqGRKracvty-citYiLsCiTK-hSpqYk----- 125 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTY-CITYILSCITK-HSPQYK----- 125 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHh----hhccccceeee-hHHHHHHHHhh-cCCceE-----
Confidence 34444455788999999999988888888999999999999 99999976653 33444444433 555552
Q ss_pred CCCCcchHHHHHHHHHHhhccccccccccc-c-chhhHHhHHHHH----HHHHHHHHHhhhcccccccccchhhhccccc
Q 011056 131 RGDFRPRAIAVFVFGFWILDVANNMTQGKD-H-RRTRVANAYFSL----FMAVGNILGYATGSFSGWFKILPFTLTSACN 204 (494)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~r~~~~~~~~~~----~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~ 204 (494)
..+....+.++...++..+...+...| . +|+- -.-+... ..-+|+-+-.+++|..+- .+..+.
T Consensus 126 ---VLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~F-eqqWls~TFskA~ffgNglvAiiaGlfgn-~lvd~~------ 194 (454)
T KOG4332|consen 126 ---VLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGF-EQQWLSVTFSKAVFFGNGLVAIIAGLFGN-LLVDTF------ 194 (454)
T ss_pred ---EEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCC-hHhhhhHHHHHHHHhhccHHHHHHHHHHH-HHHHHh------
Confidence 223444555555555444444443311 1 1111 1112221 122333333333332100 001111
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHH-HhhhchHHHHHHHHHH
Q 011056 205 VDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFG-TFRYFSGTIWIILIVT 283 (494)
Q Consensus 205 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 283 (494)
.-+--.+|-.++....+...+.+....|.-..+.++ ++....++.-.+ ...+ ++...+-.+.
T Consensus 195 --slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~-------------kdlltqf~gaa~aiaSD--~ki~LLG~iq 257 (454)
T KOG4332|consen 195 --SLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSEN-------------KDLLTQFKGAARAIASD--EKIALLGAIQ 257 (454)
T ss_pred --ccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhh-------------HHHHHHhhHhHHHHhcc--hHHHHHHHHH
Confidence 012223444444444444444443333432211111 001111111111 1112 3333332222
Q ss_pred HHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcch--HHHHHHHHHH
Q 011056 284 ALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG--FIWGISNILM 361 (494)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~--~~~~~~~~~~ 361 (494)
.+.-...+.+....++.+ ..++ .+..-|.+ ...+..++++|+-+..++..|-..| ..+.+...+.
T Consensus 258 sLFE~smytFVFLWTPaL-----spn~-------e~iPhGfi-FatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs 324 (454)
T KOG4332|consen 258 SLFEGSMYTFVFLWTPAL-----SPND-------EEIPHGFI-FATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVS 324 (454)
T ss_pred HHHhhhhheeeeeecccC-----CCCc-------ccCCchhH-HHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHH
Confidence 222222222111111111 1111 11112222 2223455677777777776654332 3344555555
Q ss_pred HHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHH
Q 011056 362 ALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIP 441 (494)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 441 (494)
...+.+....... .|+..++..-++.++++-.+.|..+|...-+-.+..|+ +.|++.+-.+..--.+-
T Consensus 325 ~a~l~Lpilt~~v----------sP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPE--earstimNfFRvPLnif 392 (454)
T KOG4332|consen 325 IAALLLPILTSSV----------SPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPE--EARSTIMNFFRVPLNIF 392 (454)
T ss_pred HHHHHHHHHHhcc----------CCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCH--HHHhhhhhheechhhHh
Confidence 5544444333211 04444555667777788888898888888888899998 77876665443322222
Q ss_pred HHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHh
Q 011056 442 QIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 442 ~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
..++-.. .-.|.........|-++.....++.+...
T Consensus 393 vClvLyn--lh~~~~p~~tr~mf~icS~~~~~a~i~~~ 428 (454)
T KOG4332|consen 393 VCLVLYN--LHVDAFPTTTRNMFGICSAFLFVASILQR 428 (454)
T ss_pred hhhhhee--cccccCccccchhhhhhHHHHHHHHHHHH
Confidence 2111111 00111111123456666666666655443
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-07 Score=90.61 Aligned_cols=136 Identities=17% Similarity=0.086 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+...++.++..+|+++.|.++||+|||+++..+.++..++-+...+.. +.+...+.-++.|++
T Consensus 122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~-----------------~~~~~~~~Rfl~G~~ 184 (521)
T KOG0255|consen 122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP-----------------NYWMFLIFRFLSGFF 184 (521)
T ss_pred HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC-----------------cHHHHHHHHHHHHhh
Confidence 445566778899999999999999999999999999999888777773 588899999999999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+......+.++.|.+++ ++|+.+..+ ......+..+++...+++... +...+++..+..++..++ +++.+|
T Consensus 185 ~~~~~~~~~~~~~E~~~~--~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~----Wr~~~~~~~~~~~~~~~~-~~l~~E 256 (521)
T KOG0255|consen 185 GSGPLTVGFGLVAEIVSP--KQRGLALTL-GGFFFVGGLMLPAGAAYITRD----WRWLFWIISIPSGLFLLL-WFLPPE 256 (521)
T ss_pred ccchhHHhHhhheeecCc--chhhHHHHH-HHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHH-HHccCc
Confidence 999999999999999999 999999998 778888888888888888762 455555555555544443 334434
Q ss_pred C
Q 011056 485 S 485 (494)
Q Consensus 485 ~ 485 (494)
.
T Consensus 257 s 257 (521)
T KOG0255|consen 257 S 257 (521)
T ss_pred C
Confidence 3
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-05 Score=70.77 Aligned_cols=143 Identities=11% Similarity=0.058 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.......+.+...+.|.+.||+|||+..+...++.+++++..... +...+++.-++.|++..
T Consensus 75 f~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~------------------~~~~L~~GRvlgGiaTS 136 (354)
T PF05631_consen 75 FVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS------------------NYPVLLLGRVLGGIATS 136 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc------------------ccHHHHHHHHHHHHHHH
Confidence 344556678888889999999999999988888888877643332 46778888889999998
Q ss_pred hhhhchhhhHhhhcccC---CCCcchhhhHHH-HHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcc
Q 011056 407 ITYSVPYALVSIRTESL---GLGQGLSLGVLN-LAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 482 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~---~~~~g~~~g~~~-~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~ 482 (494)
..++..-+.......+. ++..+...+... ..+.+-.+++..++-++.+..+.+....|.....+.+++.++.....
T Consensus 137 LLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 137 LLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTW 216 (354)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcc
Confidence 88877666554322221 022344444333 23344455556666666776665567778888888888887776666
Q ss_pred cCCCC
Q 011056 483 PRSSA 487 (494)
Q Consensus 483 ~~~~~ 487 (494)
+|+..
T Consensus 217 ~ENyg 221 (354)
T PF05631_consen 217 PENYG 221 (354)
T ss_pred cccCC
Confidence 66544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=85.99 Aligned_cols=147 Identities=16% Similarity=0.190 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hcchHH-HHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCC---chHHHHHH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRK----WGAGFI-WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPN---GIVIAALI 396 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 396 (494)
.......+...+..++.|+++|| +||||. ++.+....+++.+++... |+. .......+
T Consensus 39 ~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~--------------~~~~~~~~~~~~~~ 104 (437)
T TIGR00792 39 TLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT--------------PDFSATGKLVYAYI 104 (437)
T ss_pred HHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC--------------CCCCcchHHHHHHH
Confidence 33455677789999999999998 577565 456667777666665544 221 11334444
Q ss_pred HHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCC-----CCcchHHHHHHHH
Q 011056 397 IFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGG-----GNSPAFAVGGISA 471 (494)
Q Consensus 397 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~-----~~~~~~~~~~~~~ 471 (494)
...+++.+++.......++..|..+++ ++|++..+..+....+|..+++.+.+.+....++ ++...+.+.+++.
T Consensus 105 ~~~~~~~~~~~~~~~~~al~~~~~~~~-~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~ 183 (437)
T TIGR00792 105 TYILLGLFYSFVNIPYWSLVPAITLDP-RERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIG 183 (437)
T ss_pred HHHHHHHHHHhhcccHhhCcccccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHH
Confidence 555667777766555567777776432 7889999998888889888888877777654331 1333455666666
Q ss_pred HHHHHHHhhcccCCC
Q 011056 472 LAGGLIAILAIPRSS 486 (494)
Q Consensus 472 ~i~~~~~~~~~~~~~ 486 (494)
++..++..+..||++
T Consensus 184 ~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 184 VVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHcCCEecC
Confidence 666555555555543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-06 Score=80.17 Aligned_cols=178 Identities=13% Similarity=0.041 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHH-HHHHHHHHHHHHHHHHH-HHhhhcchHHHHH
Q 011056 279 ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALG-LMLNSVVLGITSVLMEK-LCRKWGAGFIWGI 356 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~-l~dr~g~~~~~~~ 356 (494)
+...++.+...+.....+.|.++.+. +.++. +.+.+. ........++.+++.++ ..||.||||.+++
T Consensus 6 ~~~ly~~~g~~~~~~~p~lp~~l~~~--g~~~~---------~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~ 74 (390)
T TIGR02718 6 LGLLYLSQGIPIGLAMDALPTLLRED--GAPLT---------ALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL 74 (390)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHc--CCCHH---------HHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence 34445555555566667788888543 21111 123221 12234556666766644 6888999998765
Q ss_pred HHHHH-HHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHH
Q 011056 357 SNILM-ALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLN 435 (494)
Q Consensus 357 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 435 (494)
...+. ..+...+.... +.............+..+......+....+..|..++ ++++...+...
T Consensus 75 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~--~~~~~~~~~~~ 139 (390)
T TIGR02718 75 PMQCLVSACLASLALVG-------------PDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNG--RTLAKGNAVQI 139 (390)
T ss_pred HHHHHHHHHHHHHHcCC-------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--hhhhHHHHHHH
Confidence 55332 22233333221 1100122222333334444444445555566666665 66677777777
Q ss_pred HHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 436 LAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 436 ~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
....+|..+++...+++.+..| +...|.+.+++.++..+..++..++
T Consensus 140 ~g~~lG~~~g~~~~~~l~~~~g--w~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 140 AGVMIGFFGGGAGTLVLFGKFG--QRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7778888888888888998877 6677888887777666665555444
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-06 Score=80.64 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhh
Q 011056 328 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 407 (494)
Q Consensus 328 ~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 407 (494)
..+.++.+++.++.+.+.||++..+.+....++.++-.++....+ +.+.+++.-++.|+..+.
T Consensus 88 t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~-----------------s~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 88 TVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVH-----------------SFPGLIALRFLLGLFESG 150 (495)
T ss_pred HHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHHHhcc
Confidence 345677899999999999999966655544444333333332332 577888999999999999
Q ss_pred hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC----CCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 408 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG----GGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g----~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
..|....++...+.+ +++|+-+|+++.+..+|+++|+++...+...-| .++.+.|++-+++.++.++++++..|
T Consensus 151 ~wP~~~~~lg~wy~~--~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 151 GWPGVVAILGNWYGK--SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred cchHHHHHHHhhcCh--hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 999999999999999 999999999999999999999999888754222 23678899999999999888888776
Q ss_pred CCCC
Q 011056 484 RSSA 487 (494)
Q Consensus 484 ~~~~ 487 (494)
..+.
T Consensus 229 ~~P~ 232 (495)
T KOG2533|consen 229 DNPS 232 (495)
T ss_pred CChh
Confidence 5443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-05 Score=74.18 Aligned_cols=55 Identities=9% Similarity=-0.088 Sum_probs=38.9
Q ss_pred HHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc
Q 011056 400 ILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF 456 (494)
Q Consensus 400 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~ 456 (494)
+..+.....+....+.-+.+.++ ..-|+++.+.|+..++|+---..+.=++.|.+
T Consensus 414 l~sf~stvmFVai~AFharISDP--~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 414 LSSFMSTVMFVAIMAFHARISDP--AIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHHHHHHHHHHHHhhccCc--ccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 33444444455555666777777 88999999999999999877666666666643
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-06 Score=80.37 Aligned_cols=142 Identities=18% Similarity=0.084 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
..+..+++++|++..++++||+|||..+.++.++..++.+++.+.... .+...+++.-++.|+..+
T Consensus 66 vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~--------------~~~e~li~GR~i~Gl~~g 131 (485)
T KOG0569|consen 66 VSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA--------------PSFEMLILGRLIVGLACG 131 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHhH
Confidence 344678899999999999999999999888888877777776665311 146778888999999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcch--HHHHHHHHHHHHHHHhhcccC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPA--FAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~--~~~~~~~~~i~~~~~~~~~~~ 484 (494)
........++.|..|+ +.||....+......+|..++..++. -+..|+...+. +.+..+.+++. ++.+.+.||
T Consensus 132 l~~~~~pmyl~E~sP~--~~RG~~g~~~~~~~~~g~ll~~~~~l--~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PE 206 (485)
T KOG0569|consen 132 LSTGLVPMYLTEISPK--NLRGALGTLLQIGVVIGILLGQVLGL--PSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPE 206 (485)
T ss_pred HHHHHHHHHHhhcChh--hhccHHHHHHHHHHHHHHHHHHHHcc--HHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCC
Confidence 9988888999999999 99999999998888888888755542 23344333222 22333333333 344445566
Q ss_pred CCC
Q 011056 485 SSA 487 (494)
Q Consensus 485 ~~~ 487 (494)
.++
T Consensus 207 SPk 209 (485)
T KOG0569|consen 207 SPK 209 (485)
T ss_pred Ccc
Confidence 543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=85.48 Aligned_cols=165 Identities=16% Similarity=0.202 Sum_probs=112.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCC-cchhHHHHHHHH
Q 011056 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR-RRPFIVCGAISI 111 (494)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Gr-r~~~l~~~~~~~ 111 (494)
.+.++.......+++.....++|.+.++.+.+..+...+.++..+...++.++.|+++| +... |+.+...+.+..
T Consensus 300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD----~~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLAD----KPGIRALVLFLLTLLIA 375 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcC----ccccchHHHHHHHHHHH
Confidence 33444444555567777778899999999999999999999999999999999999999 7763 343444566666
Q ss_pred HHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhcccccccc----c---cccchhhHHhHHHHHHHHHHHHHHhh
Q 011056 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQ----G---KDHRRTRVANAYFSLFMAVGNILGYA 184 (494)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~r~~~~~~~~~~~~~~g~~~g~~ 184 (494)
.++.+...+.+++ ..+....+.++.......... . ..++-. .+.|+.....+++.++|+.
T Consensus 376 gl~~~~~p~~~~~------------~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~-~a~Gl~l~~~gi~~l~gpP 442 (509)
T KOG2504|consen 376 GLARLFLPFATTY------------VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLS-NAYGLLLLFQGIGALVGPP 442 (509)
T ss_pred HHHHHHHHHhccH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcc-hHHHHHHHHhHHHHHcCcc
Confidence 6666677777776 233333333333222211111 1 333334 4999999999999999999
Q ss_pred hcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHH
Q 011056 185 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 228 (494)
Q Consensus 185 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 228 (494)
+++.+ .+ ..++|...|+..++..++.....
T Consensus 443 iag~~-----~d---------~tg~Y~~~f~~~g~~~~~s~~~~ 472 (509)
T KOG2504|consen 443 IAGLL-----YD---------ITGNYDHAFYFCGLCFLLSAVLL 472 (509)
T ss_pred cceee-----ee---------ccCCeeeehhhcChHHHHHHHHH
Confidence 98852 11 11257778888877766665444
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-06 Score=82.20 Aligned_cols=145 Identities=17% Similarity=0.098 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hcchHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCC---CchHHHHHH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRK----WGAGFIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPP---NGIVIAALI 396 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr----~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 396 (494)
....+..+...+..++.|+++|| +||||.++ .+.+..++++.+.... |+ ....+...+
T Consensus 49 ~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~--------------p~~~~~~~~~~~~~ 114 (444)
T PRK09669 49 TMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT--------------PDFGATGKIIYACV 114 (444)
T ss_pred HHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC--------------CCCCcchHHHHHHH
Confidence 33445667788889999999999 57766655 5666666665544333 21 112344445
Q ss_pred HHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCC-----CcchHHHHHHHH
Q 011056 397 IFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGG-----NSPAFAVGGISA 471 (494)
Q Consensus 397 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~-----~~~~~~~~~~~~ 471 (494)
...+++.++........++.+|..+++ ++|++..+.......+|..+++.+...+....+.+ +...+.+.+++.
T Consensus 115 ~~~l~~~~~t~~~ip~~al~~~~t~~~-~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~ 193 (444)
T PRK09669 115 TYILLSLVYTAINVPYCAMPGAITNDP-RERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLG 193 (444)
T ss_pred HHHHHHHHHHhhcchHHHhHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 555666666666655567778877543 67888888888888888888887766666655421 112334444444
Q ss_pred HHHHHHHhhcccC
Q 011056 472 LAGGLIAILAIPR 484 (494)
Q Consensus 472 ~i~~~~~~~~~~~ 484 (494)
++..+++++..||
T Consensus 194 ~v~~~~~~~~~~e 206 (444)
T PRK09669 194 VVLFFCCFFMTKE 206 (444)
T ss_pred HHHHHHHhCCeEE
Confidence 4444444444444
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.3e-06 Score=79.61 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hcchHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCC---CchHHHHHHHH
Q 011056 327 LMLNSVVLGITSVLMEKLCRK----WGAGFIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPP---NGIVIAALIIF 398 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr----~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 398 (494)
+.+.-+.-.+.-++.|+++|| +||||.++ ++.+..+++++++... |+ ........+..
T Consensus 51 ~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~--------------p~~s~~~~~~y~~~~~ 116 (460)
T PRK11462 51 FLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST--------------PDLSMNGKMIYAAITY 116 (460)
T ss_pred HHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC--------------CCCCcchHHHHHHHHH
Confidence 444566677888999999997 48888775 5656777766655433 21 11133455566
Q ss_pred HHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 399 TILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 399 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
.++.+++........++..|..+++ ++|.+..+.......+|..+++.+...+.+..|
T Consensus 117 ~~~~~~~t~~~ipy~al~~~lt~d~-~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g 174 (460)
T PRK11462 117 TLLTLLYTVVNIPYCALGGVITNDP-TQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG 174 (460)
T ss_pred HHHHHHHHHHhccHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6677888887766678888887754 899999999999999998888888777666655
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0013 Score=63.53 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCC-----CchhHHHHHHHHHHHhhhh-ccccceecccccCCCCCcchh
Q 011056 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGI-----PHAWASIIWLCGPVSGLFV-QPLVGHFSDRCTSRFGRRRPF 103 (494)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----s~~~~g~~~~~~~~~~~i~-~~~~G~l~D~~~~r~Grr~~~ 103 (494)
.++.+.....+++..+.|.+ +=+..|.+.+ +.+.+.++-+...+..++. .++.+++++ |++|+|.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~----~~~~~~lf 77 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSN----ILSKEALF 77 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHhH
Confidence 34555556666666555543 4455566655 3367888888777766655 899999999 99998866
Q ss_pred HH
Q 011056 104 IV 105 (494)
Q Consensus 104 l~ 105 (494)
-.
T Consensus 78 ~~ 79 (472)
T TIGR00769 78 YT 79 (472)
T ss_pred HH
Confidence 55
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00013 Score=73.74 Aligned_cols=167 Identities=10% Similarity=0.092 Sum_probs=96.3
Q ss_pred HHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccc
Q 011056 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (494)
Q Consensus 48 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~ 127 (494)
++...+..++.+.+|.+.+....+...+.....+...++|+++|+ ++||+|.+++ +.++..++..+..++.... .
T Consensus 5 Gm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~---~lG~~~tIl~-~~ii~~lG~~llai~a~~~-~ 79 (654)
T TIGR00926 5 GMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADG---WLGKFKTILY-LSIVYVVGHALLSFGAIPS-S 79 (654)
T ss_pred ecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHH-HHHHHHHHHHHHHhccCcc-c
Confidence 344445555567799999999999999888889999999999995 6899887776 5555566666665532110 0
Q ss_pred cCCCCCC---cchHHHHHHHHHHhhccccccccc---cccc--hhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhh
Q 011056 128 LGDRGDF---RPRAIAVFVFGFWILDVANNMTQG---KDHR--RTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTL 199 (494)
Q Consensus 128 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~ 199 (494)
.. ... ....+.+..+|.+.+-.+..+.+. ++++ +....+.+...+.++|..++..+..+ ..
T Consensus 80 ~~--~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~---------l~ 148 (654)
T TIGR00926 80 GH--PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPI---------LR 148 (654)
T ss_pred cc--chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH
Confidence 00 000 011122222222223333333333 2221 12236777788888888888776443 11
Q ss_pred cccccc-cccchhHHHHHHHHHHHHHHHHHhh
Q 011056 200 TSACNV-DCANLKSAFFLDVIFIAITTCISAS 230 (494)
Q Consensus 200 ~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~ 230 (494)
...... -..+|...|.+.++..++..++...
T Consensus 149 ~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 149 GDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred HhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 100000 0025888898888777766655443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.7e-06 Score=76.28 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++.+.|+++.|++.||+|||+++...++++.++.++..... .+. +...-...+...-.+.|+|.|
T Consensus 90 n~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~---------~~~-~~~~~m~~L~~~R~~LGiGIG 159 (538)
T KOG0252|consen 90 NAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV---------GTT-SPLGVMMTLCFFRFLLGIGIG 159 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC---------CCC-CCcchhhHHHHHHHHhhcccc
Confidence 4445778899999999999999999999999999988888554431 000 111234556677788999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhh
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGS 449 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~ 449 (494)
.-+|+.-+..+|.... +.||+..+..-..+..|...|..++
T Consensus 160 GDYPlSAtI~SE~an~--~~RGa~iaavFa~Qg~GilaG~ivt 200 (538)
T KOG0252|consen 160 GDYPLSATIMSESANK--KTRGAFIAAVFAMQGFGILAGGIVA 200 (538)
T ss_pred CCCcchHHHhhhhhhh--ccccceeEEEEEecchhHhhccHHH
Confidence 9999999999998887 8899887766555555555544443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.36 E-value=7e-06 Score=79.92 Aligned_cols=164 Identities=14% Similarity=0.167 Sum_probs=99.6
Q ss_pred HHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCc--chhHHHHHHHHHHHHHHHh-hc
Q 011056 46 GWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRR--RPFIVCGAISIAVAVLLIG-LS 121 (494)
Q Consensus 46 ~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr--~~~l~~~~~~~~~~~~~~~-~~ 121 (494)
+......+...|. +++|++..+...+..+..+...++..++|++.| |+|.| +.++....+..++....+. +.
T Consensus 296 g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~----r~g~k~~~~l~~~l~~~~~i~~~g~~G~~ 371 (477)
T PF11700_consen 296 GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQD----RFGPKTKRTLLISLILWIIIPLYGLFGFW 371 (477)
T ss_pred HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444555555 589999999999999999999999999999999 99988 6555533333233333321 11
Q ss_pred cccccccCCCCCCcchHHHHHHHHHHh----hccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhccccccccc
Q 011056 122 ADIGWLLGDRGDFRPRAIAVFVFGFWI----LDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 194 (494)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~ 194 (494)
++. .+ .......++..+..++ .........+ |+++..+ .+|++....-....+||.+-+.+.
T Consensus 372 ~~~---~g---~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~e-fFgly~i~gk~ss~lGPll~g~i~---- 440 (477)
T PF11700_consen 372 PSF---FG---LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAE-FFGLYAITGKASSWLGPLLFGLIT---- 440 (477)
T ss_pred hcc---cC---cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhH-HHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 110 00 0011222333333333 3333333333 6666666 999999999999999999866521
Q ss_pred chhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 011056 195 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 235 (494)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~ 235 (494)
+. .++.|..+....+++++..++. ..+++.
T Consensus 441 -----~~-----tg~~r~g~~~l~~lf~~gl~ll-~~v~~~ 470 (477)
T PF11700_consen 441 -----DA-----TGSQRYGFLFLLVLFLIGLILL-FFVDVE 470 (477)
T ss_pred -----HH-----hCCchhHHHHHHHHHHHHHHHH-hhccch
Confidence 11 1256777777766666655544 444443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.9e-06 Score=79.99 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHhC-CCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 011056 41 GGIQFGWALQLSLLTPYVQELG-IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (494)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~~~~g-~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~ 119 (494)
+..+........+.+.+.++.| .+....+.++++..+.-.+.-.+.+++.. |+|.|+.+++ +.+..++=+.+.+
T Consensus 217 ~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~----r~g~~~ll~~-a~~~~~vR~~l~a 291 (400)
T PF03825_consen 217 FLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLK----RFGIKWLLLL-ALVAYAVRWLLYA 291 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHH-HHHHHHHHHHHHH
Confidence 3334455566678888999998 78888899999999988888888899999 9999886655 6666776666666
Q ss_pred hc-cccccccCCCCCCcchHHH----HHHHHHHhhccccccccc---cccchhhHHhHHHHH-HHHHHHHHHhhhccccc
Q 011056 120 LS-ADIGWLLGDRGDFRPRAIA----VFVFGFWILDVANNMTQG---KDHRRTRVANAYFSL-FMAVGNILGYATGSFSG 190 (494)
Q Consensus 120 ~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~-~~~~g~~~g~~~g~~~~ 190 (494)
.. ++.+. ...... +.++.++....+...... |++.|.+ +.++++. ..++|..+|..++|.+
T Consensus 292 ~~~~~~~~--------~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at-~Q~l~~~~~~Glg~~iG~~igG~l- 361 (400)
T PF03825_consen 292 YFSDPWPF--------IVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRAT-AQGLYSALSFGLGGAIGSLIGGWL- 361 (400)
T ss_pred HhcCCcHH--------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHH-HHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 65 34310 000011 123333333222222222 6777776 8888765 4789999999998873
Q ss_pred ccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 011056 191 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 236 (494)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 236 (494)
.... +.+....|...+.+.+.+.++..++.+...||++
T Consensus 362 ----~~~~----g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 362 ----YDAF----GARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred ----HHHh----cchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 1111 1111124556666666666666666666666653
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.7e-07 Score=61.73 Aligned_cols=60 Identities=22% Similarity=0.468 Sum_probs=52.8
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHH
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~ 108 (494)
...+...++++.+.++.|+|+.++|.+.++..+...++.|++|.++| |+||+|..+..+.
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laD----k~~~~~~~l~~~~ 73 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLAD----KFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCccHHHHHHHH
Confidence 34556667889999999999999999999999999999999999999 9999997776443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-05 Score=78.43 Aligned_cols=149 Identities=11% Similarity=0.106 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh----hcchHHHH-HHHHH
Q 011056 286 TWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK----WGAGFIWG-ISNIL 360 (494)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~g~~~~~~-~~~~~ 360 (494)
..........|++.|+.+ ..+.++. ..+ ..+.+..+...+..++.|+++|| +||||.++ .+.+.
T Consensus 18 ~~~~~~~~~~~l~~yyt~-v~Gls~~---------~vg-~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~ 86 (473)
T PRK10429 18 KDFAIGIVYMYLMYYYTD-VVGLSVG---------LVG-TLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLA 86 (473)
T ss_pred HhHHHHHHHHHHHHHHHH-hcCCCHH---------HHH-HHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHH
Confidence 334444555666666653 3332221 122 33444667778888999999994 59866654 56666
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHH
Q 011056 361 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVI 440 (494)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 440 (494)
.++++.++.... + .+.........+..+++.+++........++..|..+++ ++|.+..+.......+
T Consensus 87 ~~i~~~llf~~p----~-------~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~-~eR~~l~~~~~~~~~i 154 (473)
T PRK10429 87 NSVVLFLLFSAH----L-------FEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK-REREQLVPYPRFFASL 154 (473)
T ss_pred HHHHHHHHHcCC----C-------CCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH-HHHHHHHHHHHHHHHH
Confidence 666655553320 0 011111333444555667777777766778888887532 7888888876777777
Q ss_pred HHHHHhhhhhhhhhhcC
Q 011056 441 PQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 441 g~~l~~~~~g~l~~~~g 457 (494)
++.+.+.+...+.+..|
T Consensus 155 g~~~~~~~~~~~~~~~g 171 (473)
T PRK10429 155 AGFVTAGFTLPFVNYVG 171 (473)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 77776666555544443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=71.85 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=67.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHH
Q 011056 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (494)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~ 112 (494)
-|.+...+-..++.|.....++|.+..|.|+|+.+.|++.++..+......+..-.+.+ |...+|++.....++..
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~----R~~n~r~~~~~~~~~~l 285 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLAR----RSKNQRPLVVLALLLML 285 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHH----HhcccchHHHHHHHHHH
Confidence 34444444444567777778999999999999999999999999999999999999999 66556667666777777
Q ss_pred HHHHHHhhccc
Q 011056 113 VAVLLIGLSAD 123 (494)
Q Consensus 113 ~~~~~~~~~~~ 123 (494)
++.+.+.+.+.
T Consensus 286 ~G~~G~~~~P~ 296 (395)
T COG2807 286 VGLVGLLLAPG 296 (395)
T ss_pred HHHHHHHHhhh
Confidence 77776656554
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.5e-05 Score=74.43 Aligned_cols=145 Identities=17% Similarity=0.078 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-hHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhh
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGA-GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 403 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 403 (494)
+......++..++++..++...|.+. |+.++.+.+++.++.++.....+. |. ...+.+++.-++.|+
T Consensus 75 ~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~-----------~~-~~~y~mL~~R~l~Gv 142 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV-----------PN-GVKYLMLVARILTGV 142 (488)
T ss_pred HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc-----------cc-chHHHHHHHHHHcCc
Confidence 33445788899999999999999885 777788999999998888555322 21 156788888899999
Q ss_pred HhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc--C---------CCCcchHHHHHHHHH
Q 011056 404 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF--G---------GGNSPAFAVGGISAL 472 (494)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~--g---------~~~~~~~~~~~~~~~ 472 (494)
|.+... ..-+++++..-. ++|-++++..+....+|.++||.+...+.... | +.+...-++.+++.+
T Consensus 143 g~~n~a-~lR~Y~a~~s~~--~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i 219 (488)
T KOG2325|consen 143 GVGNFA-VLRAYIADASTV--EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWI 219 (488)
T ss_pred CcccHH-HHHHHHHhccCc--cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHH
Confidence 877654 667777776555 77788888888877888888887765543321 0 112334455666666
Q ss_pred HHHHHHhhcccC
Q 011056 473 AGGLIAILAIPR 484 (494)
Q Consensus 473 i~~~~~~~~~~~ 484 (494)
+..++.....+|
T Consensus 220 ~~~v~i~~~f~E 231 (488)
T KOG2325|consen 220 IYIVIILFFFKE 231 (488)
T ss_pred HHHHHHHhheee
Confidence 666655555444
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.9e-05 Score=76.06 Aligned_cols=137 Identities=20% Similarity=0.242 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhh
Q 011056 331 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 410 (494)
Q Consensus 331 ~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 410 (494)
++..++.+.+.|.++||+|||..+........+......+. .+|..+ ..- ...+++....
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~------------------~~~~~~-~~~-l~g~~~~~~s 131 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ------------------GYWFFL-LLG-LSGGFSAIFS 131 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH------------------HHHHhh-hcc-cccchhhhhh
Confidence 56678889999999999999999988887777766666555 222222 211 2224555567
Q ss_pred chhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 011056 411 VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQKP 490 (494)
Q Consensus 411 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 490 (494)
..+++++|.... ++|....|+.+.+...+..++|.+++.+....| +...|.+..+..++..+..+...||+..++.
T Consensus 132 ~~~a~vadis~~--~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~--~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 132 VGFAYVADISSE--EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG--IALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhhhheeeccch--hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 778889998888 899999999999999999999999999999866 7778899999999998888888888765544
Q ss_pred C
Q 011056 491 R 491 (494)
Q Consensus 491 ~ 491 (494)
+
T Consensus 208 ~ 208 (463)
T KOG2816|consen 208 R 208 (463)
T ss_pred c
Confidence 3
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00019 Score=70.53 Aligned_cols=129 Identities=10% Similarity=-0.044 Sum_probs=81.7
Q ss_pred HHHHHHHHhhhc-----chHHHHHHHHHHH-HHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhc
Q 011056 338 SVLMEKLCRKWG-----AGFIWGISNILMA-LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 411 (494)
Q Consensus 338 ~~~~g~l~dr~g-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 411 (494)
.++.|.++||++ ||+.+.++.++.. +++..+... ++ ......+...+.+++.+.....
T Consensus 77 K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~--------------~~--~~~~~~~~~~l~~~~~a~~dv~ 140 (468)
T TIGR00788 77 KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGK--------------VS--SAKVAAAFIFLAALAKALYDVL 140 (468)
T ss_pred HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccc--------------cc--hHHHHHHHHHHHHHHHHHHHHh
Confidence 456999999996 5555555554442 222221111 11 2333334666777888877788
Q ss_pred hhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 412 PYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 412 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
..++..|..+++.+..+...+....+..+|..+++.++|.+.+..+ +...|.+.+++.++..+. ..+.+|+
T Consensus 141 ~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~--~~~~f~~~a~l~ll~~~~-~~~~~E~ 211 (468)
T TIGR00788 141 VDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTL--TRILFLITAALLLLQLFV-SNLSKER 211 (468)
T ss_pred HHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHH-HHhcccc
Confidence 8899999888432333444555555567899999999999999877 666777777776666433 3444554
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=77.07 Aligned_cols=132 Identities=23% Similarity=0.273 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhHHHHHHH-hCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhc
Q 011056 43 IQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121 (494)
Q Consensus 43 ~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~ 121 (494)
..+.+.......+++.++ +|.+ ...+.+..+..+...++.|++++++| |+|+||.+.. +.+..+++.+...+.
T Consensus 237 ~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~----r~gk~~~~~~-~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 237 QWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSK----RFGKKKVYII-GLLLAALGFLLLFFL 310 (428)
T ss_pred HHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHH----Hccceeehhh-hHHHHHHHHHHHHHH
Confidence 334555555666777766 5555 67788888999999999999999999 9999997776 555555565555555
Q ss_pred c--ccccccCCCCCCcchHHHHHHHHHHhhccccccccc---c------ccchhhHHhHHHHHHHHHHHHHHhhhccc
Q 011056 122 A--DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---K------DHRRTRVANAYFSLFMAVGNILGYATGSF 188 (494)
Q Consensus 122 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~~~r~~~~~~~~~~~~~~g~~~g~~~g~~ 188 (494)
+ +.+ .......+.+++.+..........+ + .+++....++..+....+|..+++.+.+.
T Consensus 311 ~~~~~~--------~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 311 GPGSPW--------LVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred HhhhHH--------HHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4 431 0111111222222222222222222 1 12233346777777888888888777654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-05 Score=70.00 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=51.1
Q ss_pred HHHHhHHHHHHH---hCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhh
Q 011056 49 LQLSLLTPYVQE---LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (494)
Q Consensus 49 ~~~~~l~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~ 120 (494)
....+.+.|.++ +|+++.+.+...+.+..+..++..+.++++| |+|+||.+.+ +..+.+++.++...
T Consensus 158 ~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~----r~g~~~~l~~-~~~l~~~~~~l~~~ 227 (310)
T TIGR01272 158 SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMP----MISQGRYLAF-NAFLAVLLSIGAAL 227 (310)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCHHHHHHH-HHHHHHHHHHHHHH
Confidence 334567777753 6999999999999999999999999999999 9999886654 44444444444433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.5e-05 Score=69.93 Aligned_cols=151 Identities=12% Similarity=0.119 Sum_probs=95.4
Q ss_pred HhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCC
Q 011056 52 SLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD 130 (494)
Q Consensus 52 ~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (494)
.+-..+. .++|++..++.++.....+..++++.+.|++.| |+|.|+.++....+...++.... +...-
T Consensus 273 ~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~----rfg~k~vl~~~lvi~~~~~~~~~-~~~~~------ 341 (438)
T COG2270 273 AMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDE----RFGSKPVLMIGLVILSIAALYLI-FLEGE------ 341 (438)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCceeehHHHHHHHHHHHHHH-Hcccc------
Confidence 3444555 489999999999999999999999999999999 99998877664444444444443 33221
Q ss_pred CCCCcchHHHHHHHHHHh----hccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccc
Q 011056 131 RGDFRPRAIAVFVFGFWI----LDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSAC 203 (494)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~ 203 (494)
...+++++..+. .+........ |+++.++ .+|+++.....+..+||.+-+... .+
T Consensus 342 ------~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~-fFglyaltgra~S~~gp~lv~v~t--~i--------- 403 (438)
T COG2270 342 ------LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGR-FFGLYALTGRAASFLGPFLVAVIT--QI--------- 403 (438)
T ss_pred ------HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccc-eeehhhhhhhHHHHHHHHHHHHHH--HH---------
Confidence 222333333333 3333333333 5555555 999999999999999998855410 11
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 011056 204 NVDCANLKSAFFLDVIFIAITTCISASAAHEV 235 (494)
Q Consensus 204 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~ 235 (494)
.++-|..+....++..+. ++.+..+|++
T Consensus 404 ---Tg~~r~g~~~i~vll~iG-l~~L~~v~~~ 431 (438)
T COG2270 404 ---TGSSRAGVLSIIVLLLIG-LLLLLRVKVP 431 (438)
T ss_pred ---hcchhhHHHHHHHHHHhh-HhhEEeecCC
Confidence 124566655555444444 3344555654
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.5e-07 Score=90.97 Aligned_cols=142 Identities=16% Similarity=0.102 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....++.++|+++.|++.||+|||+.+..+.++..++.++..+. +...+.+.+.+.-++.|++.|
T Consensus 52 ~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~--------------~~~~~~~~~~~~R~~~G~~~g 117 (451)
T PF00083_consen 52 TSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA--------------PSYNNFWMLLIGRFLIGFGIG 117 (451)
T ss_pred HHHHHhhhccccccccccccccccccccccccccccccccccccc--------------ccccccccccccccccccccc
Confidence 444677889999999999999999999999999998888887776 311136677788889999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC-CCCcchHHHHHHHHHHHHHHHhhcccCC
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG-GGNSPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g-~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
...+....++.|..|+ +.||...++.+....+|..++..+.-.+.+..+ +.+...+.+..+..++..+. ..+.||.
T Consensus 118 ~~~~~~~~~~~E~~~~--~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pES 194 (451)
T PF00083_consen 118 GAYVVSPIYISEIAPP--KHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPES 194 (451)
T ss_pred cccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 9999999999999999 899999999999888888877776544422211 11333444444444433332 3344543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0005 Score=60.38 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhh
Q 011056 331 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 410 (494)
Q Consensus 331 ~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 410 (494)
.++..+ +++.|.+.||+|++.++.++.+...+++..+...-.... + ..+.|.+.+...+.+.+.+...+
T Consensus 47 ~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i---------~-~~~~~~~~~~~~l~~~s~~~~~t 115 (250)
T PF06813_consen 47 DIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI---------P-SLPVWLMCLFLFLGGNSSCWFNT 115 (250)
T ss_pred HHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc---------C-ccchHHHHHHHHHHcccHHHhhh
Confidence 344433 578899999999999999999999999988877631100 1 11355565555666666555555
Q ss_pred chhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011056 411 VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 454 (494)
Q Consensus 411 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~ 454 (494)
.......+.+| ++||++.|+.-....+++++-..+...+.+
T Consensus 116 a~lvt~~~NFP---~~RG~vvgilk~~~GLSaai~t~i~~~~f~ 156 (250)
T PF06813_consen 116 ASLVTCVRNFP---RSRGTVVGILKGFFGLSAAIFTQIYSAFFG 156 (250)
T ss_pred HHHHHHHHhCc---cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence 55566667887 679999999999988888887766655554
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00015 Score=71.22 Aligned_cols=102 Identities=13% Similarity=0.052 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh----cchHHH-HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKW----GAGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFT 399 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (494)
.......+...+..++.|+++||. ||||.+ ..+.+...+...++.... . ..+.....+.......
T Consensus 48 ~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~ 117 (448)
T PRK09848 48 TMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVP----T------DWSHSSKVVYAYLTYM 117 (448)
T ss_pred HHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCc----C------CCCcchHHHHHHHHHH
Confidence 334456778889999999999997 777766 445444444433332211 0 0011112233444556
Q ss_pred HHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHH
Q 011056 400 ILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLA 437 (494)
Q Consensus 400 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 437 (494)
+.+++++...+...++..+..+++ ++|.+..+.-...
T Consensus 118 ~~~~~~~~~~~~~~al~~~~~~~~-~~r~~~~~~r~~~ 154 (448)
T PRK09848 118 GLGLCYSLVNIPYGSLATAMTQQP-QSRARLGAARGIA 154 (448)
T ss_pred HHHHHHHHhcccHhhhhhhhcCCH-HHHHHHHHHHHHH
Confidence 677778777766666666665543 5666666554433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00043 Score=64.63 Aligned_cols=118 Identities=10% Similarity=-0.058 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCC-CchHH--HHHHHHHHH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPP-NGIVI--AALIIFTIL 401 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~ 401 (494)
+...++.+.+++..+..-|+.||+|.|....++..+..++..+=..... |. +...+ .......+.
T Consensus 83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~------------p~v~~~f~~~l~~~Gq~ia 150 (480)
T KOG2563|consen 83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSL------------PFVPPLFRRPLTHTGQSIA 150 (480)
T ss_pred HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccC------------ccccccchhhhhHHhHHHH
Confidence 4455677788999999999999999999999999999888887555420 21 01233 555667777
Q ss_pred hhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc
Q 011056 402 GGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF 456 (494)
Q Consensus 402 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~ 456 (494)
+.++......+.-+..-.+++ ++|..+..+..+.+.+|.+++-++...+....
T Consensus 151 a~Aq~Fim~lPskiA~~WF~~--~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 151 AAAQPFILGLPSKIAAVWFPP--DQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHhhhHhhccccHHHHhhCCc--chhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 777777776766677777888 89999999888888899888888877776653
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00018 Score=68.51 Aligned_cols=148 Identities=18% Similarity=0.184 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh----cchHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHH
Q 011056 327 LMLNSVVLGITSVLMEKLCRKW----GAGFIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTIL 401 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~----g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (494)
+.+.-+.-.+.-++.|.++||. ||+|.++ .+.+..++...+.....+. ..........+...++
T Consensus 54 flv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~-----------~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 54 FLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDF-----------SMTGKLIYALVTYMLL 122 (467)
T ss_pred HHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCc-----------ccCcchHHHHHHHHHH
Confidence 3345566778888899999974 7777765 5556666666655554200 1123456677788889
Q ss_pred hhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCC-cch----HHHHHHHHHHHHH
Q 011056 402 GGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGN-SPA----FAVGGISALAGGL 476 (494)
Q Consensus 402 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~-~~~----~~~~~~~~~i~~~ 476 (494)
++++......-.++.++..+++ ++|.+..+.-.....+|..+...+.+.+.+..|.+. ... -.+.+++..+..+
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~-~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l 201 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDP-QERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLL 201 (467)
T ss_pred HHHHHheeCchhhcchhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999988866667778877764 889999999999999999999999988888876442 222 2333333344444
Q ss_pred HHhhcccCCC
Q 011056 477 IAILAIPRSS 486 (494)
Q Consensus 477 ~~~~~~~~~~ 486 (494)
++++..+|+.
T Consensus 202 ~~~~~v~ER~ 211 (467)
T COG2211 202 FCFFNVKERV 211 (467)
T ss_pred HHHHHhhccc
Confidence 4554445543
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.8e-06 Score=70.30 Aligned_cols=89 Identities=17% Similarity=0.303 Sum_probs=73.2
Q ss_pred CCCCCCHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccc-----cCCCC
Q 011056 24 ARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRC-----TSRFG 98 (494)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~-----~~r~G 98 (494)
..++..++..+.++...+..+..-+....++-.++++.|.++.....++.+..+.+++..|+.|..+|-- -||+|
T Consensus 10 stkPigr~svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G 89 (412)
T KOG4830|consen 10 STKPIGRTSVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIG 89 (412)
T ss_pred CCCcccceeeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhc
Confidence 3344677788889999999888888888888889999999999999999999999999999999777641 26999
Q ss_pred CcchhHHHHHHHHH
Q 011056 99 RRRPFIVCGAISIA 112 (494)
Q Consensus 99 rr~~~l~~~~~~~~ 112 (494)
||+.+-..+.++..
T Consensus 90 ~~~~wh~~gt~lVs 103 (412)
T KOG4830|consen 90 RRMSWHLIGTVLVS 103 (412)
T ss_pred ceeeeeecccEEEE
Confidence 99988776655443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00022 Score=62.54 Aligned_cols=120 Identities=15% Similarity=0.078 Sum_probs=76.3
Q ss_pred hHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCC
Q 011056 53 LLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (494)
Q Consensus 53 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (494)
+-|.+.+.+|+|.+|...+.++..++..+ .++.|.+.| |+|.|..+++ +.+...+++.....+-+-. .
T Consensus 24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d----~~gp~~~l~i-G~~~~~~GY~~~~l~~~~~------i 91 (250)
T PF06813_consen 24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYD----RFGPWVVLLI-GAVLGFVGYGLLWLAVSGR------I 91 (250)
T ss_pred hhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHH----hcchHHHHHH-HHHHHHHHHHHHHHHHhCc------c
Confidence 56777788999999999999999999886 588899999 9999665555 6667777777765542210 0
Q ss_pred CCcchHHHHHHHHHHhhc-ccc-----ccccc-cccchhhHHhHHHHHHHHHHHHHHhhh
Q 011056 133 DFRPRAIAVFVFGFWILD-VAN-----NMTQG-KDHRRTRVANAYFSLFMAVGNILGYAT 185 (494)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~-~~~-----~~~~~-~~~~r~~~~~~~~~~~~~~g~~~g~~~ 185 (494)
.....+........+... ... ..... -+++|+. +.|+.-...+++..+-..+
T Consensus 92 ~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~-vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 92 PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGT-VVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCc-eehhhhHHHHhHHHHHHHH
Confidence 111122222211111111 111 11111 3456776 9999999999988876554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00044 Score=70.01 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHhhh-cchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCC---CchHHHHHHHHHHHhhHhh
Q 011056 331 SVVLGITSVLMEKLCRKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPP---NGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 331 ~~~~~i~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~ 406 (494)
....-+..++++++.|++ |+++.+.++.++..++..++.+... |. .......++.+.+..+|.|
T Consensus 33 ~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~------------~~~~~~~~~~~~l~gLaLia~G~G 100 (654)
T TIGR00926 33 TYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI------------PSSGHPLHDLLDLLGLALIALGTG 100 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC------------cccccchHHHHHHHHHHHHHhhcc
Confidence 334567778888999976 9999999999988888877765420 11 1122335566777788888
Q ss_pred hhhhchhhhHhhhcccCC-CCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC-----CCCcchHHHHHHHHHHHHHHHhh
Q 011056 407 ITYSVPYALVSIRTESLG-LGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG-----GGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g-----~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
..-+...+...|.++++. +++-..+.++..+.++|+.+++.+.+++.+..+ .++..+|.+.+++++++.++...
T Consensus 101 giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 101 GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887521 246677888888999999999999998875532 12445677777777777665554
Q ss_pred cc
Q 011056 481 AI 482 (494)
Q Consensus 481 ~~ 482 (494)
..
T Consensus 181 g~ 182 (654)
T TIGR00926 181 GS 182 (654)
T ss_pred hc
Confidence 33
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0027 Score=57.22 Aligned_cols=134 Identities=17% Similarity=0.124 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHH--HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhh
Q 011056 330 NSVVLGITSVLMEKLCRKWGAGFIW--GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 407 (494)
Q Consensus 330 ~~~~~~i~~~~~g~l~dr~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 407 (494)
..+.++++.+..|.+.-+..|..-+ .++.+..+...+++.... +.|...+..+++...+..
T Consensus 280 ~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~-----------------~Iw~~Ya~yvlfr~~y~l 342 (433)
T KOG3810|consen 280 STLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ-----------------HIWVCYAGYVLFRVIYQL 342 (433)
T ss_pred HHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc-----------------ceehhhhhHHHHHhhHhh
Confidence 3445677778888886555554333 334333333333333321 477788888888888888
Q ss_pred hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCC---------CcchHHHHHHHHHHHHHHH
Q 011056 408 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGG---------NSPAFAVGGISALAGGLIA 478 (494)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~---------~~~~~~~~~~~~~i~~~~~ 478 (494)
..++....+++.... +.-|..+|+..+..-+-+.+-..+ +.|..|-+ +..-|.+.+++.+++....
T Consensus 343 ~itiA~~~iA~nL~~--e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 343 TITIATFQIARNLSS--ELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIE 417 (433)
T ss_pred hhhHHHHHHHHhhhh--hhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHH
Confidence 777877788887787 889999998877666655554443 45533311 1223677777878776655
Q ss_pred hhcccCC
Q 011056 479 ILAIPRS 485 (494)
Q Consensus 479 ~~~~~~~ 485 (494)
+...++.
T Consensus 418 ~~~~~~~ 424 (433)
T KOG3810|consen 418 YLMCRRN 424 (433)
T ss_pred HHHhhcC
Confidence 5444433
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0014 Score=52.94 Aligned_cols=110 Identities=10% Similarity=0.023 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhh
Q 011056 324 ALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 403 (494)
Q Consensus 324 ~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 403 (494)
...+.+......+.+++.+.+.+++|.|+.++++.+...+-....... +.+.++....+.|+
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~------------------~~~~l~~~s~l~G~ 101 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP------------------NSYTLYPASALLGF 101 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh------------------hHHHHHHHHHHHhh
Confidence 344444445567778888999999999999998888876555544333 36778888889999
Q ss_pred HhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhh
Q 011056 404 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD 453 (494)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~ 453 (494)
+.+..+...-.++.+..++ +++++..|++-.....+..+|..+.-.+.
T Consensus 102 ~~a~lW~aqg~ylt~~s~~--~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 102 GAALLWTAQGTYLTSYSTE--ETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hhHHhhHhhhHHHHHcCCH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888887777 78888888888888888777776654443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0006 Score=63.30 Aligned_cols=121 Identities=11% Similarity=-0.007 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhhhc-----chHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhh
Q 011056 334 LGITSVLMEKLCRKWG-----AGFIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 407 (494)
Q Consensus 334 ~~i~~~~~g~l~dr~g-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 407 (494)
..+.+...|+.+|+.+ ||..++ .+..+...+..+..+....-.+.. +...-+...........+.++|++...
T Consensus 27 ~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~-~~~~~~~~~g~~~a~l~F~l~G~G~~~ 105 (403)
T PF03209_consen 27 VAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESG-QQSSGPFWLGLALAALAFLLYGLGVHA 105 (403)
T ss_pred HHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccc-cccccccHHHHHHHHHHHHHHHhhHhH
Confidence 3467889999999998 887775 466666666655554422111100 000001111223445567788888888
Q ss_pred hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 408 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
..+...++++|..|+ ++|+++.++.....-+|.+++..+.|.+.+.+.
T Consensus 106 s~T~~lALl~D~~~e--~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s 153 (403)
T PF03209_consen 106 SGTSFLALLADLAPE--ERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS 153 (403)
T ss_pred hHHHHHHHHHhcCCH--hhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 888889999999999 999999999999999999999999999888643
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00061 Score=66.08 Aligned_cols=134 Identities=18% Similarity=0.134 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhh---c-chHHH-HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhh
Q 011056 336 ITSVLMEKLCRKW---G-AGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 410 (494)
Q Consensus 336 i~~~~~g~l~dr~---g-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 410 (494)
...++.|.++|-+ | |||.+ +++.++..++...+.... ....+.....+++.+..++......
T Consensus 39 ~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~-------------~~~~s~~~~~~~l~la~~g~a~~DV 105 (433)
T PF03092_consen 39 SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP-------------ASESSAAIAVVLLFLASFGYAFADV 105 (433)
T ss_pred HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc-------------cccchhhhHHHHHHHHHHHHHHHHH
Confidence 3457889999987 2 44444 556666655555555542 1111344455566667778887778
Q ss_pred chhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 411 VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 411 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
+.-+++.|....+++.+|...+....+..+|+.++..++|.+.+..+ +...|.+.+.+..+..+..++..+|
T Consensus 106 ~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~--~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 106 AADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG--PQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC--CeEEehHHHHHHHHHHHHHHHhhhh
Confidence 88889999887655557888888899999999999999999999866 6777877777777776666666565
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00019 Score=50.56 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=62.3
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
++-..+.+.+|.+.++.++|.++.|++.+...+++.++.+...++.+ +..+|+ ++..+.+..+++.+.+++.++.
T Consensus 6 igRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~ma~~~~~ 80 (85)
T PF06779_consen 6 IGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPR----HSRPRR-LLRAGLLLTVLSTAAMALTHSF 80 (85)
T ss_pred hHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHH-HHHHHHHHHHHHHHHHHHHhch
Confidence 34455667899999999999999999999999999999999999988 755444 5555888888888888887765
|
Note that many members are hypothetical proteins. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0023 Score=59.56 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhh
Q 011056 390 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSM 447 (494)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~ 447 (494)
+.+..+....++|+..|-..+....+..+.+|+ +++-.+-.+.......|-..|..
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~--~e~e~aG~~m~~fl~~Gl~~G~~ 397 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKP--SEKEAAGNLMVFFLVGGLALGSL 397 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCCh--HHHHHHHHHHHHHHHHHHHHhhH
Confidence 345677788888998888777888888877776 44444444444444444444443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.11 Score=50.24 Aligned_cols=58 Identities=9% Similarity=0.056 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhh
Q 011056 390 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGS 449 (494)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~ 449 (494)
+.+..++...++|+..|-..+.......+.+++ +++..+-.+.+.+..+|-.+|..++
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~--~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDP--HEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667778899998888888888888887776 7777777788888778777777653
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0061 Score=55.63 Aligned_cols=127 Identities=9% Similarity=-0.061 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhh
Q 011056 330 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 409 (494)
Q Consensus 330 ~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 409 (494)
......+++...+.+.|++|||+.+.+......+.-++-... | +...++++-.+.|+|.|. .
T Consensus 122 v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s--------------p---nf~~L~~f~~l~~~g~gg-~ 183 (528)
T KOG0253|consen 122 VFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS--------------P---NFASLCVFRALWGFGVGG-L 183 (528)
T ss_pred HHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC--------------C---CeehhhHHHHHHhccCCC-c
Confidence 455678999999999999999998876665554443333222 3 466677888889999988 7
Q ss_pred hchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHh
Q 011056 410 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 479 (494)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~ 479 (494)
|...++-.|..|. .+|+.-+=+. ....+|+.+...+.=.+...+| +.+.+........+.+.+..
T Consensus 184 pv~~~~yle~lp~--~~r~~~~V~~-~~waig~v~ea~law~vm~~~g--wr~~l~~~~~pl~~~a~f~~ 248 (528)
T KOG0253|consen 184 PVDSAIYLEFLPS--SHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG--WRYLLFTSSTPLMFAARFLV 248 (528)
T ss_pred cHhHHHHHHhccC--cCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHhHHHHHHHHHh
Confidence 7888888999998 6666655444 7888888888877766777777 33333333343334444333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=61.96 Aligned_cols=123 Identities=11% Similarity=-0.015 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccC-CCCcchh
Q 011056 352 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL-GLGQGLS 430 (494)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~g~~ 430 (494)
|.+.++.++..++.+++.+..... ..++......+.+.+.+.++|.|..-+...++..|.++++ ++++...
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~--------~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~ 73 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPP--------SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSF 73 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSS--------SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcc--------hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhh
Confidence 456678888888888866653100 0011113456777788899999999999999999999986 4677778
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 431 LGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 431 ~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
+..+....++|..+++.+.+++.+..| +...|.+.++..+++.+..+.-++.
T Consensus 74 F~~fY~~in~G~~~~~~~~~~i~~~~~--~~~~f~i~~~~~~~~~~~f~~~~~~ 125 (372)
T PF00854_consen 74 FNWFYWGINIGSLFSPTLVPYIQQNYG--WFLGFGIPAIGMLLALIVFLSGRKR 125 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCS---HHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHhhhhHhhcccchhhccccc--hhhhhhHHHHHHHHHHHHHHhCCcC
Confidence 888999999999999999999998877 7778888888888887766654443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.03 Score=48.76 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=16.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhc
Q 011056 207 CANLKSAFFLDVIFIAITTCISASA 231 (494)
Q Consensus 207 ~~~~~~~f~~~~~~~~~~~~~~~~~ 231 (494)
..+|++.+.+.+++.++-+++..++
T Consensus 37 ~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 37 TNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3479998888877666655555444
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0021 Score=61.53 Aligned_cols=130 Identities=14% Similarity=0.104 Sum_probs=89.2
Q ss_pred HHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhcccc
Q 011056 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (494)
Q Consensus 45 ~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~ 124 (494)
++.+....++--.+++++-.+...|........+-.+.-++.+++.. |+|+-+++.+ ++....+=++.....+|.
T Consensus 385 ~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~----kiGHv~v~~l-gLa~~~~Rf~~~S~L~n~ 459 (618)
T KOG3762|consen 385 AGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIE----KIGHVNVMYL-GLACNVGRFLYYSYLQNP 459 (618)
T ss_pred HHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHH----Hhcccceeee-hhhHHHHHHHHHHHhcCc
Confidence 34555556666678999988888887777777777888888999999 9999886665 666777777777788887
Q ss_pred ccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHH-HHHHHHHHHHHhhhccc
Q 011056 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYF-SLFMAVGNILGYATGSF 188 (494)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~-~~~~~~g~~~g~~~g~~ 188 (494)
|+.+. .-++-++..+.+..+...... |++.+.. +.++. ....++|-.+|.++|+.
T Consensus 460 W~vLP--------ieilqgit~aliWaa~~sY~s~vaPp~l~at-~Q~l~~g~f~GlG~g~GslIGG~ 518 (618)
T KOG3762|consen 460 WMVLP--------IEILQGITHALIWAAIISYASHVAPPGLRAT-AQGLLQGIFHGLGKGLGSLIGGF 518 (618)
T ss_pred hheee--------HHHHHHHHHHHHHHHHHHHHHhhCCCcchHH-HHHHHHHHhcccCcchhhhhhhh
Confidence 54332 223444444443332222222 6666665 66665 45678888999999887
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.012 Score=41.12 Aligned_cols=70 Identities=10% Similarity=0.096 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Q 011056 279 ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISN 358 (494)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~ 358 (494)
+-..+++.+.+..++..|.+.|+.+.. .++. +.+ +...+..+..+++.++.|+++||.++++......
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~~G--l~~~---------~iG-il~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQLG--LSPS---------QIG-ILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhcC--CCHH---------HHH-HHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 345566666777788888888886422 1111 122 3344456778999999999999999998876555
Q ss_pred HH
Q 011056 359 IL 360 (494)
Q Consensus 359 ~~ 360 (494)
.+
T Consensus 73 ~~ 74 (77)
T PF12832_consen 73 LF 74 (77)
T ss_pred HH
Confidence 44
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.55 Score=46.11 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=39.6
Q ss_pred CHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHh---CCCchhHHHHHHHHHH-HhhhhccccceecccccCCCCCcchhH
Q 011056 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQEL---GIPHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (494)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~s~~~~g~~~~~~~~-~~~i~~~~~G~l~D~~~~r~Grr~~~l 104 (494)
.+++.+.++..++...+.|.+.- ..-+.+ ..+++.+..+=....+ ...+...+..+++| |++|.|.+-
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~lR----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n----~~s~~~lFy 93 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTILR----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSN----RLSREKLFY 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHH
Confidence 35667777777777766665432 111111 1234444444333333 33455667889999 999988665
Q ss_pred H
Q 011056 105 V 105 (494)
Q Consensus 105 ~ 105 (494)
.
T Consensus 94 ~ 94 (491)
T PF03219_consen 94 I 94 (491)
T ss_pred H
Confidence 4
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.075 Score=50.23 Aligned_cols=127 Identities=12% Similarity=-0.026 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchh
Q 011056 334 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 413 (494)
Q Consensus 334 ~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 413 (494)
.++..++...+.|..+-|++++++.+...+...++.+.. +...+-+.-+.+|++.+.-. ..+
T Consensus 54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~-----------------sv~~mq~~q~~yg~~~a~ev-ay~ 115 (412)
T PF01770_consen 54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT-----------------SVLAMQLMQFFYGLATAAEV-AYY 115 (412)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC-----------------cHHHHHHHHHHHHHHHHHHH-HHH
Confidence 445556667889999999999999888888888777763 57778888888888777643 455
Q ss_pred hhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 414 ALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 414 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
+++=..+|+ ++--++.+....+..+|..++..++-.+.+.-+.++.....+......++.++.++
T Consensus 116 sYiys~v~~--~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 116 SYIYSVVDK--EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred HHheeecCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666676 66677788888888888888888877777654444444445555545555555444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.51 Score=46.05 Aligned_cols=118 Identities=10% Similarity=0.014 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCC--------CCCCCc-------hHHHHHHHH
Q 011056 334 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGH--------DLPPNG-------IVIAALIIF 398 (494)
Q Consensus 334 ~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-------~~~~~~~~~ 398 (494)
.++..++.+++++|++|++++-.........++++.+.-+-..+ ..+++ ..|..- ..|...+..
T Consensus 57 ~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~-~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FY 135 (472)
T TIGR00769 57 AVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSD-LLHPTALADKLLSLLPPGFMGFIAILRIWSFALFY 135 (472)
T ss_pred HHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchh-hcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHH
Confidence 34447888999999999999876666666666655544210000 00000 001100 012222222
Q ss_pred HHHhhHhhhhhh-chhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011056 399 TILGGPLAITYS-VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 454 (494)
Q Consensus 399 ~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~ 454 (494)
+...+-.....+ +.++.+.|.+.. ++..+.+++.+...++|..+++.+..++.+
T Consensus 136 v~~elw~~~vvS~lFW~fandi~t~--~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 136 VMAELWGSVVLSLLFWGFANQITTI--DEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233332333334 678999999998 899999999999999999999998888764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.061 Score=49.31 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=51.2
Q ss_pred HHHHHHHhHHHHHHHhCCCc--hhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccc
Q 011056 46 GWALQLSLLTPYVQELGIPH--AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (494)
Q Consensus 46 ~~~~~~~~l~~~~~~~g~s~--~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~ 123 (494)
.........+.+..+++.+. ...++..+.+.+...++.++.|.++| |+|||+.++. +......+.+...+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 91 (338)
T COG0477 17 DLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD----RYGRRKVLII-GLLLFLLGTLLLALAPN 91 (338)
T ss_pred hcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccc----cccchHHHHH-HHHHHHHHHHHHHhCcc
Confidence 33444456677777777776 58899999999999999999999999 8899865554 44333444444444443
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.2 Score=47.83 Aligned_cols=112 Identities=14% Similarity=0.083 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccCCC--CCCcchHHHHHHHHHHhhccccccccc----cc-cchhhHHhHHHHHH
Q 011056 102 PFIVCGAISIAVAVLLIGLSADIGWLLGDR--GDFRPRAIAVFVFGFWILDVANNMTQG----KD-HRRTRVANAYFSLF 174 (494)
Q Consensus 102 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~r~~~~~~~~~~~ 174 (494)
.+++ +.+...+|.+++.++...... ... .......+.+..+|.+..-.......+ ++ +++.+..+.++...
T Consensus 3 tI~~-g~~~~~~G~~ll~l~~~~~~~-~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 3 TILL-GSIVYLLGHVLLTLSAIPPSL-PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHH-HHHHHHHHHHH--HHHTSSSC-------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred hhhH-HHHHHHHHHHHhHHHHhcchh-hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 3444 566666677764333222100 000 011223344455555555444444444 22 23333488899999
Q ss_pred HHHHHHHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhh
Q 011056 175 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 230 (494)
Q Consensus 175 ~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 230 (494)
.++|..++..+.+++. . ..+|.+.|.+.++..++..+..+.
T Consensus 81 in~G~~~~~~~~~~i~---------~------~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQ---------Q------NYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHCCCHHH---------H------CS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhcccchhhc---------c------ccchhhhhhHHHHHHHHHHHHHHh
Confidence 9999999988765521 1 127889999988777766655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.074 Score=48.75 Aligned_cols=113 Identities=20% Similarity=0.113 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
.....+...++.++.|++.||.|||+.+..+.....++.+...+.. . ...+...+.....|++.+
T Consensus 45 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~g~~~~ 109 (338)
T COG0477 45 LSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP--------------N-VGLALLLILRLLQGLGGG 109 (338)
T ss_pred HHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc--------------c-chHHHHHHHHHHHHhhhH
Confidence 3334555666668999999999999777766655444433333331 1 124455555555788888
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHH-HHHHHHHHHhhhhhhhhhh
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNL-AIVIPQIVVSMGSGPWDQL 455 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~g~~l~~~~~g~l~~~ 455 (494)
...+...+++.|..|+ .++++...+.... ...++..+++.+.+.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 110 GLLPVASALLSEWFPE-ATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888999998884 1267888887777 5778888888777777665
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.028 Score=53.02 Aligned_cols=158 Identities=10% Similarity=0.096 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh----hcc
Q 011056 275 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK----WGA 350 (494)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~g~ 350 (494)
.+..+..+.+...+++..-..|.++|+.+. +... ...+.......+.+++.+++.|..+|| +||
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~l--Gvph----------k~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQSL--GVPH----------KWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHc--CCCc----------ccccccccccccccceeccccccccccccccccc
Confidence 334445555556677777778899988532 1111 111222333456677888888999996 588
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHhhhhccccCCCCCCC----chHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCC
Q 011056 351 GFIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPPN----GIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 425 (494)
Q Consensus 351 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 425 (494)
||.++ .+....++++.++.+..+.....- +.+.. -.....++.+.+.=++........-++..|...+ +
T Consensus 101 RRPfI~~~s~~i~~~l~Lig~aaDig~~lg----d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~--d 174 (498)
T KOG0637|consen 101 RRPFILAGSLLIAVSLFLIGYAADIGLLLG----DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG--D 174 (498)
T ss_pred ccchHHHhhHHHHHHHhhhhhHhhhhHHhc----CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC--h
Confidence 88875 455666677777666643221100 00111 1122223333344445555666777888888777 4
Q ss_pred Ccch-hhhHHHHHHHHHHHHHhhhhh
Q 011056 426 GQGL-SLGVLNLAIVIPQIVVSMGSG 450 (494)
Q Consensus 426 ~~g~-~~g~~~~~~~~g~~l~~~~~g 450 (494)
++-+ +++.+.....+|+.+|-.+++
T Consensus 175 ~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 175 AKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhhhccchhHHHHHHhcceeeeeccc
Confidence 4444 888899999999888777766
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.5 Score=43.85 Aligned_cols=58 Identities=9% Similarity=0.069 Sum_probs=37.9
Q ss_pred HHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh-hcC
Q 011056 397 IFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ-LFG 457 (494)
Q Consensus 397 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~-~~g 457 (494)
..++.++..|...|....+..+... ++.|...|-....+.+|+++|+++.+++.- ..|
T Consensus 116 ~~~~~~~l~G~~~Pl~~~~~~~~~~---~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG 174 (521)
T PRK03612 116 LVLLIGLLIGMEIPLLMRILQRIRD---QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLG 174 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcc
Confidence 3444556666665554444433211 245777888888999999999999888654 566
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=3.3 Score=41.71 Aligned_cols=100 Identities=10% Similarity=-0.002 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHH
Q 011056 355 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVL 434 (494)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 434 (494)
-+|.++..+++...+.......+........+.+.+.++.+.-.++.|++.........-..=+.+|+ +.|+.+.+++
T Consensus 422 g~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~--sMkS~~~al~ 499 (571)
T KOG1237|consen 422 GIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPE--SMKSVATALW 499 (571)
T ss_pred eccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCH--HHHHHHHHHH
Confidence 35666666666666655321111100000001223566777778889998887776555556666788 9999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhc
Q 011056 435 NLAIVIPQIVVSMGSGPWDQLF 456 (494)
Q Consensus 435 ~~~~~~g~~l~~~~~g~l~~~~ 456 (494)
.+...+|..+...+...+....
T Consensus 500 l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 500 LLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999887665544
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.16 Score=51.52 Aligned_cols=148 Identities=12% Similarity=0.084 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhcccc----------C----------------CCCCC
Q 011056 334 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR----------G----------------HDLPP 387 (494)
Q Consensus 334 ~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----------------~~~~~ 387 (494)
..+...+..+...|..|.+.+-++.++++++.++..+.+...+..+.+ . +..++
T Consensus 145 ~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 224 (735)
T KOG3626|consen 145 NLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPE 224 (735)
T ss_pred hhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCC
Confidence 334444445666787788888889999999999888764432211111 0 00000
Q ss_pred ------Cc---hHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCC
Q 011056 388 ------NG---IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGG 458 (494)
Q Consensus 388 ------~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~ 458 (494)
.. .+..+++..++.|+|....++...+++-|.+.+ ++...+.|+......+|-++|-++++.+...+.+
T Consensus 225 ~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~--~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD 302 (735)
T KOG3626|consen 225 NSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKK--KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVD 302 (735)
T ss_pred cccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccc--cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeec
Confidence 11 123455667788898888888888999888888 8999999999999999999988888887654321
Q ss_pred -----------------CCcchHHHHHHHHHHHHHHHhhccc
Q 011056 459 -----------------GNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 459 -----------------~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.++..|++.+.+.++.++..+++-+
T Consensus 303 ~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk 344 (735)
T KOG3626|consen 303 FGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK 344 (735)
T ss_pred cccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 1223477777777777776666543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.70 E-value=4.4 Score=39.21 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhC---CCchhHHHHHHHHHH-HhhhhccccceecccccCCCCCcchhHH
Q 011056 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELG---IPHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (494)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~s~~~~g~~~~~~~~-~~~i~~~~~G~l~D~~~~r~Grr~~~l~ 105 (494)
..+.+.+++.+++..+.|.. +-.+-+.+. .+++.+.++=+..-+ +..+..++.+++.+ +.-|++.+-.
T Consensus 26 ~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~----~lt~~~vF~~ 97 (509)
T COG3202 26 LKKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLN----ILTREKVFYI 97 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHh----hcCHHHHHHH
Confidence 34455566666666555533 333344443 345666777666666 66788889999999 8888776654
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.66 Score=46.25 Aligned_cols=35 Identities=11% Similarity=-0.271 Sum_probs=29.3
Q ss_pred HHHHhCCCchhHHHHHHHHHHHhhhhccccceecc
Q 011056 57 YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSD 91 (494)
Q Consensus 57 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D 91 (494)
...-+|-+....+.+.+++.++.+++..+.|++.+
T Consensus 41 l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~ 75 (521)
T PRK03612 41 ASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLR 75 (521)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34557888888999999999999999998887765
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.0081 Score=59.77 Aligned_cols=153 Identities=11% Similarity=0.096 Sum_probs=2.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccC--------------C---------
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRG--------------H--------- 383 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--------- 383 (494)
...+-++.++..++..++.+|..|.|.+..+.++++++.+++.+.+...+..+... -
T Consensus 44 ~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 123 (539)
T PF03137_consen 44 SSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQAS 123 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccccccccccccccccc
Confidence 34456667777777788888877777777899999999998876543322111000 0
Q ss_pred -------C--CCC-CchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhh
Q 011056 384 -------D--LPP-NGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD 453 (494)
Q Consensus 384 -------~--~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~ 453 (494)
. ... ......+++..++.|+|....+++..+++-|.+++ ++.+.+.|+......+|-++|-.+++...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~--~~splYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 124 SDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK--KNSPLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------------------SSS-------------------------------------------------
T ss_pred CccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc--ccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence 0 000 11245566778889999999999999999999998 89999999999999999999888888776
Q ss_pred hhcC--------------------CCCcchHHHHHHHHHHHHHHHhhc
Q 011056 454 QLFG--------------------GGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 454 ~~~g--------------------~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
+.+. +.++..|++.+.+.++.++..+.+
T Consensus 202 ~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 202 RIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp ------------------------------------------------
T ss_pred hceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5331 012234666666666666555544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.35 Score=39.19 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=51.7
Q ss_pred HHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccc
Q 011056 73 LCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVA 152 (494)
Q Consensus 73 ~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (494)
++......+.+++...+.+ ++|.|+.+++ +.+...+-.... +-++.+ .....-.+.+++..++-.+
T Consensus 44 ai~Y~~~~~s~l~~P~iv~----~lg~K~sm~l-g~~~y~~y~~~~-~~~~~~--------~l~~~s~l~G~~~a~lW~a 109 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVN----KLGPKWSMIL-GSLGYAIYIASF-FYPNSY--------TLYPASALLGFGAALLWTA 109 (156)
T ss_pred HHHHHHHHHHHHhHHHHHH----HHhhHHHHHH-HHHHHHHHHHHH-HhhhHH--------HHHHHHHHHhhhhHHhhHh
Confidence 4455555666677777889 9999887776 444444333333 323321 1111222333333333222
Q ss_pred cccccc---cccchhhHHhHHHHHHHHHHHHHHhhh
Q 011056 153 NNMTQG---KDHRRTRVANAYFSLFMAVGNILGYAT 185 (494)
Q Consensus 153 ~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~ 185 (494)
...... .++++.+ ..++.-.....+.++|.++
T Consensus 110 qg~ylt~~s~~~~~~~-~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 110 QGTYLTSYSTEETIGR-NTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred hhHHHHHcCCHHHHhh-HHHHHHHHHHHHHHHHHHH
Confidence 222222 4555555 7777777777777777655
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.59 Score=45.15 Aligned_cols=106 Identities=8% Similarity=-0.006 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhh
Q 011056 327 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 406 (494)
Q Consensus 327 ~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 406 (494)
..+......+.++..+.+.|+++.|..+.++......-.+.+... +.+..+....+.|+|.+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~------------------N~y~~yfssallG~Gaa 117 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP------------------NSYYLYFSSALLGFGAA 117 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc------------------chHHHHHHHHHhhhhHH
Confidence 333344467788889999999999999999888887776666655 46778888999999999
Q ss_pred hhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhh
Q 011056 407 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPW 452 (494)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l 452 (494)
..+...-.+++|...+ +...+..++.-.....+.++|+.+.-.+
T Consensus 118 llw~GqG~ylt~~st~--~tie~Nisi~Wai~~~~li~Ggi~l~~~ 161 (461)
T KOG3098|consen 118 LLWTGQGGYLTSNSTR--ETIERNISIFWAIGQSSLIIGGIILFIY 161 (461)
T ss_pred heecccceehhhcCCh--hhHHHHHHHHHHHHHHHHHhhhHhheee
Confidence 8887777888888887 7777777877777777777776554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=93.46 E-value=6 Score=38.31 Aligned_cols=140 Identities=11% Similarity=-0.023 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH----HHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHh
Q 011056 330 NSVVLGITSVLMEKLCRKWGAGFIWGISNILM----ALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL 405 (494)
Q Consensus 330 ~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 405 (494)
-++..++.+...|..+||..|.+....+.+.. ++++.++.......... ..+.......+....+.+...
T Consensus 47 ~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~------~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 47 RSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSS------SQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccc------cccchHHHHHHHHHHHHHHHH
Confidence 45567788888899999999988875554433 22222222221000000 000001112222222222111
Q ss_pred hhhhhchhh------hHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHH
Q 011056 406 AITYSVPYA------LVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIA 478 (494)
Q Consensus 406 ~~~~~~~~~------~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~ 478 (494)
- ....... .+......+++.....++.+.-.-.+...++|++.|.+.+..+ ......+.++..+++...=
T Consensus 121 ~-Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s--~~~~~~~i~~~N~~S~~vE 196 (432)
T PF06963_consen 121 R-LASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFAS--PVIAAIFIAGWNLASVFVE 196 (432)
T ss_pred H-HHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--HHHHHHHHHHHHHHHHHHH
Confidence 1 1111111 1122222222556667777777788899999999999998766 4445555555555555443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.95 Score=40.69 Aligned_cols=62 Identities=10% Similarity=0.104 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhh
Q 011056 390 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD 453 (494)
Q Consensus 390 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~ 453 (494)
+.+..++.++.=|+--|..+.-.+--+.+..++ ++|-.+++.......+|-.++..++-.+.
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~p--d~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEP--DVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCc--hHHHHhHhhheecchhhHHHHHHHhccch
Confidence 355555555555665555554555555665666 77888888888888888777776654443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.95 Score=42.95 Aligned_cols=123 Identities=9% Similarity=-0.117 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhh
Q 011056 328 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 407 (494)
Q Consensus 328 ~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 407 (494)
....+.+++..+..++..+|+.-+.-......++.+++++..+.. +.+.-++..++.+++.+.
T Consensus 66 ladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~-----------------~v~~~l~Gv~las~ssg~ 128 (402)
T PF02487_consen 66 LADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP-----------------SVWVRLLGVVLASLSSGL 128 (402)
T ss_pred HHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc-----------------chhHHHHHHHHHhhhhhh
Confidence 334556777888889999999755545556667777887776652 456666777777777776
Q ss_pred hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHH
Q 011056 408 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGG 475 (494)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~ 475 (494)
.-....++. ..+++ . ..+-++.....++.+|+...-.+.+ .|......++....+.++-.
T Consensus 129 GE~tfL~lt-~~y~~--~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~ 188 (402)
T PF02487_consen 129 GEVTFLSLT-HFYGK--S----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFL 188 (402)
T ss_pred hHHHHHHHH-HhcCc--c----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHH
Confidence 665555553 34443 2 2344555555566667666655555 55334445555544443333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.57 E-value=3.2 Score=38.75 Aligned_cols=29 Identities=21% Similarity=0.482 Sum_probs=17.6
Q ss_pred HHHHHHHh-----hhcchHHHHH-HHHHHHHHHHH
Q 011056 339 VLMEKLCR-----KWGAGFIWGI-SNILMALCFLA 367 (494)
Q Consensus 339 ~~~g~l~d-----r~g~~~~~~~-~~~~~~~~~~~ 367 (494)
+++..++| |+||||.+++ +..+.+..+..
T Consensus 81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mll 115 (510)
T KOG3574|consen 81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLL 115 (510)
T ss_pred HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHH
Confidence 45556666 9999999864 34444333333
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.48 E-value=8.1 Score=39.02 Aligned_cols=147 Identities=10% Similarity=-0.034 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHhhh-cchHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-----CCC----CCCCchHHHHHHHHHH
Q 011056 331 SVVLGITSVLMEKLCRKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR-----GHD----LPPNGIVIAALIIFTI 400 (494)
Q Consensus 331 ~~~~~i~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~ 400 (494)
........++.++++|-+ ||-+.+.++.++..+++.++......... +.. .+. .+.......+...+.+
T Consensus 83 ~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l-~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~l 161 (571)
T KOG1237|consen 83 GGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPAL-LPFMCKFKPGGNVCESPSKLQLAVLYGALYL 161 (571)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccccCCCCCCcccCcchHHHHHHHHHHHH
Confidence 334566778889999987 88888888888887776665554211100 000 000 0111112344555666
Q ss_pred HhhHhhhhhhchhhhHhhhcccC----CCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHH
Q 011056 401 LGGPLAITYSVPYALVSIRTESL----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGL 476 (494)
Q Consensus 401 ~g~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~ 476 (494)
..+|.+..-+...+.-+|-+++. .+.....+..+....+.|..++-.+.-++.+..+ +...|-+..++..++.+
T Consensus 162 ia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~--w~lgf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 162 IALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVG--WKLGFGIPTVLNALAIL 239 (571)
T ss_pred heeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhccc--ceeeccHHHHHHHHHHH
Confidence 67788888888888888888832 1233466777888888888888888887777766 55566666666666655
Q ss_pred HHhh
Q 011056 477 IAIL 480 (494)
Q Consensus 477 ~~~~ 480 (494)
+.+.
T Consensus 240 iF~~ 243 (571)
T KOG1237|consen 240 IFLP 243 (571)
T ss_pred HHHc
Confidence 5443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.84 E-value=2.6 Score=37.21 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchh
Q 011056 334 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 413 (494)
Q Consensus 334 ~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 413 (494)
.++...+.|-++||-|||+..+.-.+...++++ .. ++ | ..-.+.+.-.+-|+.....++..-
T Consensus 85 smLFGtivgSLaDkqGRKracvtycitYiLsCi----TK---hS--------p---qYkVLmVGR~LGGiaTsLLFSaFE 146 (454)
T KOG4332|consen 85 SMLFGTIVGSLADKQGRKRACVTYCITYILSCI----TK---HS--------P---QYKVLMVGRVLGGIATSLLFSAFE 146 (454)
T ss_pred HHHHHHHHHHHHhhhccccceeeehHHHHHHHH----hh---cC--------C---ceEEEeehhhhhhHHHHHHHHHHH
Confidence 456666778899999999976544444444433 21 00 2 233455566667777666665444
Q ss_pred h-hHhhhcccCCCCc-----chhhh-HHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 414 A-LVSIRTESLGLGQ-----GLSLG-VLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 414 ~-~~~~~~~~~~~~~-----g~~~g-~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
+ ++.|..+. +.. ....+ ..-..+.+-.+++++.+-.+.|.++-+....|-..+.+..++..+.+.-..
T Consensus 147 sWliaEHnek--r~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ 221 (454)
T KOG4332|consen 147 SWLIAEHNEK--RGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWS 221 (454)
T ss_pred HHHHHHhhhc--cCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhh
Confidence 3 34454432 111 11111 111233444555666666677777756666776666666666555544333
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.44 E-value=7.3 Score=35.67 Aligned_cols=68 Identities=19% Similarity=0.095 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchh
Q 011056 334 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 413 (494)
Q Consensus 334 ~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 413 (494)
-+..+++.+.+++++|.|..+.++..........-.. | ....++......|++.+......-
T Consensus 71 l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~---------------p---r~~tlVPa~~~~G~aa~p~W~Skg 132 (390)
T KOG3097|consen 71 LIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE---------------P---RYETLVPAGLVLGMAAGPIWASKG 132 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc---------------h---hHHhhccHHHhhccccccccccCc
Confidence 3455666678899999999887666554332221111 1 245566667778888777665555
Q ss_pred hhHhhh
Q 011056 414 ALVSIR 419 (494)
Q Consensus 414 ~~~~~~ 419 (494)
+++++.
T Consensus 133 tYlT~~ 138 (390)
T KOG3097|consen 133 TYLTPM 138 (390)
T ss_pred ceecHH
Confidence 555444
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.13 E-value=25 Score=32.45 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILM 361 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~ 361 (494)
..+..+++...+.+.+.|.+.+++||......+.+.-
T Consensus 314 f~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~ 350 (390)
T KOG3097|consen 314 FAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVH 350 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 4455678887888889999999999998887666554
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=86.26 E-value=9.9 Score=27.05 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Q 011056 323 GALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILY 372 (494)
Q Consensus 323 ~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 372 (494)
+.+....+.++.++|++...++.++.++++.+..+.+...+..+.+.+..
T Consensus 29 ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 29 AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445567888999999999999988888888889988888888888773
|
Note that many members are hypothetical proteins. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=85.68 E-value=0.26 Score=45.58 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=3.3
Q ss_pred HHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhh
Q 011056 391 VIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGS 449 (494)
Q Consensus 391 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~ 449 (494)
.+..++...++|+..|-..+.......+.+++ +++..+-.+.+.+..+|-.+|..++
T Consensus 248 d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~--~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 248 DAWFIILMLLFGFTNGYLSTLAMMYAPKSVSP--EERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -------------------HHHH------------------------------------
T ss_pred hHHHHHHHHHHHHccchhhhceeeeCCCcCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888998888888888888888886 6666666666666666666665553
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.88 E-value=35 Score=32.15 Aligned_cols=37 Identities=8% Similarity=-0.004 Sum_probs=28.4
Q ss_pred hchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhh
Q 011056 410 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMG 448 (494)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~ 448 (494)
........|.+|+ ++|+...|+.|..+..-..+--++
T Consensus 405 lAVtqimQe~VpE--seR~vv~gvqnsL~~~ldll~~il 441 (503)
T KOG2601|consen 405 LAVTQIMQETVPE--SERCVVFGVQNSLNSALDLLKDIL 441 (503)
T ss_pred HHHHHHHHHhcch--hhhhhhHhHHHHHHHHHHHHHHhE
Confidence 4455677899999 999999999998887766554433
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=84.18 E-value=46 Score=32.99 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH-----hhhhccccC--CCCCCCc-------hHHHHHHHH
Q 011056 333 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYY-----VAIHMDYRG--HDLPPNG-------IVIAALIIF 398 (494)
Q Consensus 333 ~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~-------~~~~~~~~~ 398 (494)
++++...+..++.+|+++++++-+........+.++++.-+ .+.+...+. ..++..- ..|...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 45666777899999999999886666555555555554311 110100000 0011100 011111111
Q ss_pred HHHhhHhhhhhh-chhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhh
Q 011056 399 TILGGPLAITYS-VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 454 (494)
Q Consensus 399 ~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~ 454 (494)
+..-+-.....+ .-+..+.|.+.. ++..+.+++++...++|..+++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~--~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTV--EEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111122223 458889999988 899999999999999999999888888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.98 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.94 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.88 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.47 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.47 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.41 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.41 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.39 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.92 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.9 |
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-30 Score=248.36 Aligned_cols=386 Identities=12% Similarity=0.029 Sum_probs=256.8
Q ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHH
Q 011056 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (494)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~ 107 (494)
.+++.++.++...+...+......+.+|.+.+++|+|..+.|++.+++.++..+++++.|+++| |+||||.++. +
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~-~ 97 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIIT-G 97 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH----HSCHHHHHHH-H
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhcchHHHHH-H
Confidence 3445555555566666666677778899999999999999999999999999999999999999 9999887766 6
Q ss_pred HHHHHHHHHHH---hhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHH
Q 011056 108 AISIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNIL 181 (494)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~ 181 (494)
.+..+++.++. .++++++. ......+.+++.+........... ++++|++ +.++.....++|..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~--------l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~ 168 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYTL--------FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHF-RLNLAQTFNSFGAII 168 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHH--------HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHH-HHHHHHHHHHHHHHH
Confidence 66667777777 67777622 122333444444443333333333 6677776 899999999999999
Q ss_pred Hhhhcccccccccchhhh------------cccccccccchhHHHHHHHHHHHHHHHHHhh-cccCCCCCCCCCCCCCCc
Q 011056 182 GYATGSFSGWFKILPFTL------------TSACNVDCANLKSAFFLDVIFIAITTCISAS-AAHEVPLGSHDQSAPFSE 248 (494)
Q Consensus 182 g~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~ 248 (494)
++.+++.+... ..+... .........+||+.|++.+.+.++..++.++ ..||++++++++
T Consensus 169 g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------ 241 (438)
T 3o7q_A 169 AVVFGQSLILS-NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD------ 241 (438)
T ss_dssp HHHHTTHHHHT-SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC------
T ss_pred HHHHHHHHHhc-ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc------
Confidence 99998763100 000000 0000000012899997777665555444333 234433221111
Q ss_pred cccccchhhhhhHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhh-hhhhhcCCCCCCCccccccchhhHHHH
Q 011056 249 EGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW-MGREIYGGEPNEGQNYATGVRMGALGL 327 (494)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (494)
++ ++...++.++.+++ |.++..++..++..........+.+.| +. +.++.+. .......
T Consensus 242 ---~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~----------~~~~~~~ 301 (438)
T 3o7q_A 242 ---AK----QGSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVE-EIPGMTA----------GFAANYL 301 (438)
T ss_dssp ---SS----TTSHHHHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSTTCCH----------HHHHHHH
T ss_pred ---cc----ccchhhhHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCcch----------hHHHHHH
Confidence 00 11122344556666 778888777777777777777888888 54 3333222 1222334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhh
Q 011056 328 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 407 (494)
Q Consensus 328 ~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 407 (494)
....++.+++.++.+++.||+|||+.+..+.++.++++++..+.. +. ...+...+.+++.+.
T Consensus 302 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~~~g~~~~~ 363 (438)
T 3o7q_A 302 TGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----------------GH-VGLIALTLCSAFMSI 363 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC-----------------HH-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC-----------------Cc-HHHHHHHHHHHHHHH
Confidence 456777889999999999999999999888888877776655541 22 234455777888888
Q ss_pred hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHH
Q 011056 408 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLI 477 (494)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~ 477 (494)
..+..+++..|..|+ + ++.+.++.. ...++..++|.+.|.+.|..| ++...|.+.+++.++..++
T Consensus 364 ~~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQ--D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHHHSSCGG--G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT-SSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccc--c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHH
Confidence 888888998999886 4 778888766 677999999999999999876 3555666655554444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=6.4e-32 Score=263.90 Aligned_cols=383 Identities=12% Similarity=0.047 Sum_probs=264.0
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHH
Q 011056 37 ASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (494)
Q Consensus 37 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~ 116 (494)
....+...+......+.+|.+.+++ .+..+.|++.+++.++..+++++.|+++| |+||||.+++ +.++.+++.+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~~~ 107 (451)
T 1pw4_A 34 FFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAAVML 107 (451)
T ss_dssp HHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH----hcCchHHHHH-HHHHHHHHHH
Confidence 3333444444455566788888999 99999999999999999999999999999 9999886655 7777777888
Q ss_pred HHhh----ccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccc
Q 011056 117 LIGL----SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFS 189 (494)
Q Consensus 117 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~ 189 (494)
+.++ ++++. .......+.+++.+........... ++++|++ +.++.....++|..+|+.+++.+
T Consensus 108 ~~~~~~~~~~~~~--------~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 108 FMGFVPWATSSIA--------VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG-IVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHCHHHHSSSS--------HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHH-HHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHhhhhccccHH--------HHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8878 77772 2222333344444433333333322 6677777 99999999999999999998752
Q ss_pred cccccchhhhcccccccccc-hhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccc---cccchhhhhhHHHH-
Q 011056 190 GWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG---HEQSSDVHEAFLWE- 264 (494)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~- 264 (494)
... .+ ||+.|++.+++.++..++.++.+||+|++...+.+++.+++ +.+++++++...++
T Consensus 179 -----~~~----------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (451)
T 1pw4_A 179 -----MAW----------FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI 243 (451)
T ss_dssp -----HHH----------TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHH
T ss_pred -----HHH----------hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccc
Confidence 111 15 99999998888777777777778887765332211111000 00000001111112
Q ss_pred -HHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 011056 265 -LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 343 (494)
Q Consensus 265 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 343 (494)
..+.+++ +.++..++..++..........+.+.++.+ .++.++ ...........++.+++.++.++
T Consensus 244 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~----------~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 244 FMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFAL----------DKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555 788888888888877777777888887753 222211 12223345567788999999999
Q ss_pred HHhhh--cchHHHHHHHHHHH-HHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhc
Q 011056 344 LCRKW--GAGFIWGISNILMA-LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 420 (494)
Q Consensus 344 l~dr~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 420 (494)
+.||+ |+|+.+..+..+.. ++++++.+. +. .+.+...+...+.|++.+...+....++.|.+
T Consensus 311 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 375 (451)
T 1pw4_A 311 MSDKVFRGNRGATGVFFMTLVTIATIVYWMN--------------PA-GNPTVDMICMIVIGFLIYGPVMLIGLHALELA 375 (451)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC--------------CT-TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHh--------------cc-cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh
Confidence 99999 99998877766655 444443332 11 13555666777788888887778889999999
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 421 ESLGLGQGLSLGVLNLAIVI-PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 421 ~~~~~~~g~~~g~~~~~~~~-g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
|+ +++|+++|+.+....+ |..++|.+.|.+.+..| +...|.+.+++.+++.++.++.
T Consensus 376 ~~--~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 376 PK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp CT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHH
Confidence 98 8999999999999999 99999999999999876 6777887777777776665554
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-27 Score=232.26 Aligned_cols=401 Identities=13% Similarity=0.058 Sum_probs=238.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHH-HH-----hCCCchhHHHHHHHHHHHhhhhccccceecccccCC-CCCcchhH
Q 011056 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QE-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFI 104 (494)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r-~Grr~~~l 104 (494)
..+......+...+.+......++.+. ++ +|.|..+.+++.+++.++..+++++.|+++| | +||||.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~g~r~~~~ 89 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD----RIIGARPAVF 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchHHHH
Confidence 444444444554455555555666665 44 8999999999999999999999999999999 9 89988776
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccc--hhhHHhHHHHHHHHHHH
Q 011056 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHR--RTRVANAYFSLFMAVGN 179 (494)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--r~~~~~~~~~~~~~~g~ 179 (494)
. +.++..++.+++++++++. .......+.+++.+........... ++++ |+. +.+..+...++|.
T Consensus 90 ~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~ 159 (491)
T 4aps_A 90 W-GGVLIMLGHIVLALPFGAS--------ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDA-GFSIFVFGINLGA 159 (491)
T ss_dssp H-HHHHHHHHHHHHHSCCSTT--------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHH-HHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHHHHhccchHHHHHHHHcCccccccee-eehHHHHHHHHHH
Confidence 6 6677777888888888772 2223333344444433333333322 4444 444 7788889999999
Q ss_pred HHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhh
Q 011056 180 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 259 (494)
Q Consensus 180 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (494)
.+++.+++.+ ... .+||+.|++.++..++..++.++..|+..+++.++.+.+. ++++.++..+.
T Consensus 160 ~~~~~~~~~l-----~~~----------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 223 (491)
T 4aps_A 160 FIAPLIVGAA-----QEA----------AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPL-APEEVKPLLVK 223 (491)
T ss_dssp HHHHHHHHHH-----HHH----------SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCC-SHHHHHHHHHH
T ss_pred HHHHHHHHHH-----Hhh----------hhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcc-ccchhHHHHHH
Confidence 9999998763 111 1799999998776666555544433332221111110000 00000000000
Q ss_pred ------------------------h-------------------HHHHHHH--HhhhchHHHHHHHHHHHHHHHHHHHHH
Q 011056 260 ------------------------A-------------------FLWELFG--TFRYFSGTIWIILIVTALTWLGWFPFL 294 (494)
Q Consensus 260 ------------------------~-------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (494)
. ..++... ..++.....+...+..++.+..+....
T Consensus 224 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4aps_A 224 VSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGS 303 (491)
T ss_dssp CCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0 0000000 000000112333333344444444444
Q ss_pred hhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHH-----HHHHHHHHHHHHHH
Q 011056 295 LFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG-----ISNILMALCFLAML 369 (494)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~-----~~~~~~~~~~~~~~ 369 (494)
.+.+.+.. +.++.+... .+ .......+..+++.++.+++.||+|||+... .+..+.+++++++.
T Consensus 304 ~~~~~~~~-~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 304 VVLATFAA-ERVDSSWFP---------VS-WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp THHHHHHH-HSCCCSSSC---------SG-GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHH-HHhccCccC---------HH-HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Confidence 44555554 323322111 11 1123345667778888999999999886544 66667777766665
Q ss_pred HHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhh
Q 011056 370 ILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGS 449 (494)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~ 449 (494)
.......+ +...+.+...+...+.|++.+...+..+.++.|..|+ +.+|++.|+.+....+|..+++.+.
T Consensus 373 ~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 373 IPGALYGT--------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK--AFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp HHHHHCCC--------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT--TCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred HHHHhcCC--------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54211000 0111345566777888898888888889999999999 8999999999999999999999999
Q ss_pred hhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCC
Q 011056 450 GPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 486 (494)
Q Consensus 450 g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 486 (494)
+.+.+. + +...|...+++++++.++.++..++.+
T Consensus 443 ~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 443 TLYNAK-S--EVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp GGGGGS-S--TTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHhcc-c--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988764 2 556677777777777766666555443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=229.54 Aligned_cols=390 Identities=13% Similarity=0.093 Sum_probs=225.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhHHHHHH-HhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHH
Q 011056 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (494)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~ 109 (494)
++.+......+...+.+....+++|.+.+ ++|+|+.+.|++.+++.++..+++|++|+++| |+||||+++....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD----r~Grr~~l~~~~~~ 82 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLWIITG 82 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT----TSTTCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHHH
Confidence 34444444444444455666678888775 58999999999999999999999999999999 99999988764433
Q ss_pred HHHH--HHHHHhhccccccccCCCCCCcchHHHHHHHHHHhhcccccc-ccc--cc--cchhhHHhHHHHHHHHHHHHHH
Q 011056 110 SIAV--AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNM-TQG--KD--HRRTRVANAYFSLFMAVGNILG 182 (494)
Q Consensus 110 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~--~~r~~~~~~~~~~~~~~g~~~g 182 (494)
..+. ......+.+... ........+.+...+........ ... ++ ++++. ..+......++|..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~g~~~~ 154 (417)
T 2cfq_A 83 MLVMFAPFFIFIFGPLLQ-------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNF-EFGRARMFGCVGWALG 154 (417)
T ss_dssp TTSCHHHHHHHTHHHHHH-------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTC-CHHHHSSSTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhccc-chHHHHHHHHHHHHHH
Confidence 2211 111111211110 00001111111111111001111 111 22 22222 4556656677888888
Q ss_pred hhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHH
Q 011056 183 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 262 (494)
Q Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (494)
+.+++.+ .. .+|++.|++.++..++..+..++..||+++..+++ + ++ ++++ ++...
T Consensus 155 ~~l~~~l-----~~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~~~~----~~~~~ 210 (417)
T 2cfq_A 155 ASIVGIM-----FT-----------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA-N-AV--GANH----SAFSL 210 (417)
T ss_dssp HHHHHHH-----HH-----------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSS-S-SS--SSCC----CCCCH
T ss_pred HHHHHHH-----HH-----------hchhHHHHHHHHHHHHHHHHHHHcCcccccccccc-c-cc--cccc----ccccH
Confidence 8887652 11 15788888766554433333333333432211100 0 00 0000 11123
Q ss_pred HHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHH
Q 011056 263 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 342 (494)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 342 (494)
++.++.+++ |+++..++..+.....+..+....+.|+. +.++.. +.+.....+......+..+++.++.+
T Consensus 211 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~g 280 (417)
T 2cfq_A 211 KLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFT-SFFATG-------EQGTRVFGYVTTMGELLNASIMFFAP 280 (417)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSSSH-------HHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc-------CCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666 77766655544433333333333455553 222110 00111112223445566788899999
Q ss_pred HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhccc
Q 011056 343 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 422 (494)
Q Consensus 343 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 422 (494)
++.||+|||+++..+..+.+++++.+.+. + +.+..++...+.+++.+...+..+.++.|..|+
T Consensus 281 ~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~ 343 (417)
T 2cfq_A 281 LIINRIGGKNALLLAGTIMSVRIIGSSFA--------------T---SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV 343 (417)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHTTC--------------C---SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHh--------------c---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 99999999999888777776665544332 1 244455555556666666666667899999998
Q ss_pred CCCCcchhhhH-HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCC
Q 011056 423 LGLGQGLSLGV-LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 487 (494)
Q Consensus 423 ~~~~~g~~~g~-~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 487 (494)
+.+|++++. .+....+|+.++|.+.|.+.+..| +...|.+.+++.+++.++.+...||+++
T Consensus 344 --~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 344 --RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp --HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred --HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 899999998 488889999999999999998766 5667888888888887776665665544
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-26 Score=223.94 Aligned_cols=391 Identities=15% Similarity=0.095 Sum_probs=228.4
Q ss_pred HHHHhHHHHHHHhCC--------CchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhh
Q 011056 49 LQLSLLTPYVQELGI--------PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (494)
Q Consensus 49 ~~~~~l~~~~~~~g~--------s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~ 120 (494)
..+..++.+.++++. ++.+.|++.+++.++..++++++|+++| |+|||+.+++ +.++..++.++.++
T Consensus 30 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laD----r~GRk~~l~~-~~~l~~i~~i~~a~ 104 (491)
T 4gc0_A 30 VISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKI-AAVLFFISGVGSAW 104 (491)
T ss_dssp GGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----HTCHHHHHHH-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHH-HHHHHHHHHHHHHH
Confidence 334456666666532 2456789999999999999999999999 9999987776 66666667776664
Q ss_pred ------------------ccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHH
Q 011056 121 ------------------SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGN 179 (494)
Q Consensus 121 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~ 179 (494)
++|+. .....+.+.+++.+........... ++++|++ ..+....+..+|.
T Consensus 105 ~~~~~~~~~~~~~~~~~~a~~~~--------~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~-~~~~~~~~~~~g~ 175 (491)
T 4gc0_A 105 PELGFTSINPDNTVPVYLAGYVP--------EFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGK-LVSFNQFAIIFGQ 175 (491)
T ss_dssp TTTTTSCSSSSSSCCGGGGGCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHH-HHHHHHHHHHHHH
T ss_pred HhhhhhhhcchhHHHHHHhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhh-hHHhhhhhhhhhh
Confidence 33331 1122334444444433222222222 7777776 8888889999998
Q ss_pred HHHhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccccc------
Q 011056 180 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ------ 253 (494)
Q Consensus 180 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~------ 253 (494)
.+++.++...... .++ ......+||+.+.+..+..++ .++..+..||+|++...+++.++..+..+
T Consensus 176 ~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 176 LLVYCVNYFIARS--GDA-----SWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHTT--SCT-----TTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhccc--ccc-----ccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 8888776542100 000 001112566666655544443 34456778999875433322211100000
Q ss_pred ----chhhhhhHHHHHH-----HHhhhchHHHHHHHHHHHHHH-HHHHHHHhhchhhhhhhhcCCCCCCCccccccchhh
Q 011056 254 ----SSDVHEAFLWELF-----GTFRYFSGTIWIILIVTALTW-LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMG 323 (494)
Q Consensus 254 ----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (494)
+..+.+....+.. ....+ .++.........+.+ .+...+..|.+.... .. +.+ . ...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~--------~--~~~ 314 (491)
T 4gc0_A 248 LATQAVQEIKHSLDHGRKTGGRLLMFG-VGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TL-GAS--------T--DIA 314 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHSC-CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HS-SCC--------H--HHH
T ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHhc-ccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hc-CCC--------c--cch
Confidence 0000000000000 01111 123333333333333 333344444443332 21 110 0 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhh
Q 011056 324 ALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 403 (494)
Q Consensus 324 ~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 403 (494)
.......++..+++.++.+++.||+|||+.++.+.....++++.+..... ... ..+..++...++..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~------------~~~-~~~~~~~~~~~~~~ 381 (491)
T 4gc0_A 315 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------------TQA-PGIVALLSMLFYVA 381 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH------------TTC-CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh------------ccc-chHHHHHHHHHHHH
Confidence 12234456778889999999999999999999888888887777655431 111 12222333333333
Q ss_pred Hhhh-hhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc----CCCCcchHHHHHHHHHHHHHHH
Q 011056 404 PLAI-TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF----GGGNSPAFAVGGISALAGGLIA 478 (494)
Q Consensus 404 ~~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~----g~~~~~~~~~~~~~~~i~~~~~ 478 (494)
+++. ..++.+.+.+|.+|+ +.|+++.|+.+..+.++.++++.+.+.+.+.. ..+....|++.+++++++.++.
T Consensus 382 ~~~~~~~~~~~~~~~E~fPt--~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 382 AFAMSWGPVCWVLLSEIFPN--AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HHHTTTTHHHHHHHHHSSCT--TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3322 336778899999999 99999999999999999999999887765431 1114456778888888998888
Q ss_pred hhcccCCCCCC
Q 011056 479 ILAIPRSSAQK 489 (494)
Q Consensus 479 ~~~~~~~~~~~ 489 (494)
+++.||+|.+.
T Consensus 460 ~~~~PETkg~t 470 (491)
T 4gc0_A 460 WKFVPETKGKT 470 (491)
T ss_dssp HHHCCCCTTCC
T ss_pred HheecCCCCCC
Confidence 88899988653
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-27 Score=221.62 Aligned_cols=343 Identities=14% Similarity=0.049 Sum_probs=233.3
Q ss_pred HHhhhHHHHHHHHHHHhHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHH
Q 011056 37 ASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (494)
Q Consensus 37 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~ 116 (494)
....+...+......+.+|.+.+++|.|+.+.+++.+++.++..+++++.|+++| |+||||.++. +.+...++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~~~ 80 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD----RVGRRPVILV-GMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT----TSCCCCCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHH-HHHHHHHHHH
Confidence 3444444556667777889999999999999999999999999999999999999 9999998776 6666677777
Q ss_pred HHhhccccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccc
Q 011056 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 193 (494)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~ 193 (494)
...+++++..+ .....+.+++.+........... ++++|++ +.+.......+|..+++.+++.+.
T Consensus 81 ~~~~~~~~~~l--------~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~l~--- 148 (375)
T 2gfp_A 81 VAVTTSSLTVL--------IAASAMQGMGTGVGGVMARTLPRDLYERTQLRH-ANSLLNMGILVSPLLAPLIGGLLD--- 148 (375)
T ss_dssp HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCS-HHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred HHHHhccHHHH--------HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHH---
Confidence 77777776211 12222233333322222222222 5677777 999999999999999999987631
Q ss_pred cchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhHHHHHHHHhhhch
Q 011056 194 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS 273 (494)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (494)
.. .+||+.|.+.++..++..+...+..||+++++++++ + .+. +.++.+++
T Consensus 149 --~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-----~~~---~~~~~~~~-- 198 (375)
T 2gfp_A 149 --TM----------WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT--------R-----LLT---SYKTLFGN-- 198 (375)
T ss_dssp --CH----------HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC--------C-----TTT---CSTHHHHH--
T ss_pred --Hh----------ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc--------c-----HHH---HHHHHhcC--
Confidence 11 168999998887777666656667777654432210 0 011 11233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHH
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 353 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 353 (494)
|+++...+..++..........+.+.++.+.. + ++. ...........++.+++.++.+++.||.+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g--------~~~--~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~- 266 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL-G--------LSS--MTVSILFILPIPAAFFGAWFAGRPNKRFSTLM- 266 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH-H--------HHH--HHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------CCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 77777777777777777777777887775422 1 111 11223344456778888999999999988732
Q ss_pred HHHHHHH-HHHHHH--HHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchh
Q 011056 354 WGISNIL-MALCFL--AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLS 430 (494)
Q Consensus 354 ~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 430 (494)
..+... ...+.. ...... .+ +.+...+...+.|++.+...+...++..|..| +++|++
T Consensus 267 -~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p---~~~g~~ 327 (375)
T 2gfp_A 267 -WQSVICCLLAGLLMWIPDWFG---VM------------NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP---FLAGTA 327 (375)
T ss_dssp -HHHHHHHHHTSSSSSHHHHHH---HH------------HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH---HHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhhhc---cc------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC---cccchH
Confidence 222222 222222 122211 00 34556667778889999888899999999987 578999
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhcC
Q 011056 431 LGVLNLAIVIPQIVVSMGSGPWDQLFG 457 (494)
Q Consensus 431 ~g~~~~~~~~g~~l~~~~~g~l~~~~g 457 (494)
.|+.+....+|..++|.+.|.+.+..+
T Consensus 328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 328 GALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999987654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=198.07 Aligned_cols=398 Identities=11% Similarity=0.068 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHHhHHHHH-HHhC------CCchhHHHHHHHHHHHhhhhccccceecccccCCC-CCcchhHHHHHHHHH
Q 011056 41 GGIQFGWALQLSLLTPYV-QELG------IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFIVCGAISIA 112 (494)
Q Consensus 41 ~~~~~~~~~~~~~l~~~~-~~~g------~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~-Grr~~~l~~~~~~~~ 112 (494)
+...+.+....+.++.+. +++| .|..+.+++.+++.++..++.++.|+++| |+ ||||.++. +.+..+
T Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~~g~r~~~~~-~~~~~~ 96 (524)
T 2xut_A 22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD----RFFGKYNTILW-LSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT----TSSCSHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcchHHHHH-HHHHHH
Confidence 333344444445666655 6689 99999999999999999999999999999 99 99887766 666667
Q ss_pred HHHHHHhhcc-ccccccCCCCCCcchHHHHHHHHHHhhccccccccc---cccchhh--HHhHHHHHHHHHHHHHHhhhc
Q 011056 113 VAVLLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTR--VANAYFSLFMAVGNILGYATG 186 (494)
Q Consensus 113 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~--~~~~~~~~~~~~g~~~g~~~g 186 (494)
++.++..+++ +... ......+.+++.+........... ++++|++ ..+++.....++|..+|+.++
T Consensus 97 ~~~~~~~~~~~~~~~--------~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 97 VGHAFLAIFEHSVQG--------FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHHHHHHHTSSCHHH--------HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcccHHH--------HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776 6521 112222333333332222222222 5556643 134448888999999999987
Q ss_pred ccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccc------cccc-hhhhh
Q 011056 187 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG------HEQS-SDVHE 259 (494)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~------~~~~-~~~~~ 259 (494)
+.+ ... .+|++.|.+.++..++..++.++..++.++.++++++..+..+ .+++ +++..
T Consensus 169 ~~l-----~~~----------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (524)
T 2xut_A 169 PLL-----LKN----------FGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNI 233 (524)
T ss_dssp THH-----HHT----------SCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHH
T ss_pred HHH-----hcc----------ccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCcc
Confidence 752 111 1799999988877666555444333322211111100000000 0000 00000
Q ss_pred -----------------------------------------hHHHHHHH--------HhhhchHHHHHHHHHHHHHHHHH
Q 011056 260 -----------------------------------------AFLWELFG--------TFRYFSGTIWIILIVTALTWLGW 290 (494)
Q Consensus 260 -----------------------------------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 290 (494)
..+++..+ ..++ +++.+.............
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 312 (524)
T 2xut_A 234 GLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDG-VRSVLRILVLFALVTPFW 312 (524)
T ss_dssp HHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTT-TTTHHHHHHHHTTSHHHH
T ss_pred chhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 00000000 0011 122211111111100000
Q ss_pred HHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH----hhhcc----hHHHHHHHHHHH
Q 011056 291 FPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC----RKWGA----GFIWGISNILMA 362 (494)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~----dr~g~----~~~~~~~~~~~~ 362 (494)
.....+.+.+.. ...+.+.. .+ ...+ .......+..++...+.+++. ||.|+ ++.+..+.++.+
T Consensus 313 ~~~~~~~~~~~~-~~~~~~~~---~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 384 (524)
T 2xut_A 313 SLFDQKASTWIL-QANDMVKP---QW---FEPA-MMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITG 384 (524)
T ss_dssp TTTSSTTTHHHH-HHHHSCCC---SS---SCHH-HHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHH
T ss_pred HHHhccchhhHH-hHHhcCCC---ee---ecHH-HHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 011111111111 11000000 00 0111 111112233344444444432 44432 345556666666
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHH
Q 011056 363 LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQ 442 (494)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~ 442 (494)
++++++........+ +...+.+..++..++.|++.+...+..++++.|..|+ +.+|+++|+.+....+|+
T Consensus 385 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~g~ 454 (524)
T 2xut_A 385 LSWIVVGTIQLMMDG--------GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK--AMKGTIMSFWTLSVTVGN 454 (524)
T ss_dssp HHHHTTTTTTTTTTT--------TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT--TCCTTTHHHHGGGHHHHH
T ss_pred HHHHHHHHHHHHhcC--------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHHHHHH
Confidence 666655443100000 0111345566778888999998888999999999998 999999999999999999
Q ss_pred HHHhhhhhhhhhhcCC--------CC-cchHHHHHHHHHHHHHHHhhcccCC
Q 011056 443 IVVSMGSGPWDQLFGG--------GN-SPAFAVGGISALAGGLIAILAIPRS 485 (494)
Q Consensus 443 ~l~~~~~g~l~~~~g~--------~~-~~~~~~~~~~~~i~~~~~~~~~~~~ 485 (494)
.++|.+.|.+.+..+. +. ...|.+.+++.+++.++.++..++.
T Consensus 455 ~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 455 LWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998874210 01 1125666666666666555544443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=128.86 Aligned_cols=181 Identities=10% Similarity=0.058 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhh----cCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh-h
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREI----YGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-W 348 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~ 348 (494)
+.++..+...++...+++....+.+.|+.++. ++.+. ....+......++..+++++.|+++|| +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------~~~~~~~~~~~~~~~~~~~~~g~l~dr~~ 82 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITR----------ATAASIMAIYASMVYLSGTIGGFVADRII 82 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56667777777777777777777788876441 22111 122244455678889999999999999 8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcc
Q 011056 349 GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 428 (494)
Q Consensus 349 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 428 (494)
|||+++..+.++.+++.++..+.+ +.+.+++..++.|++.+...+...+++.|.+|++++.|+
T Consensus 83 g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 145 (491)
T 4aps_A 83 GARPAVFWGGVLIMLGHIVLALPF-----------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRD 145 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCC-----------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccce
Confidence 999999999998888887766542 356677788889999999999999999999998333488
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 429 LSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 429 ~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.++++.+....+|..++|.+++.+.+..| +...|.+.++..+++.+..++..+
T Consensus 146 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 146 AGFSIFVFGINLGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88999999999999999999999999876 667777777766666655544433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=127.34 Aligned_cols=141 Identities=13% Similarity=0.052 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH----HHHhhhhccccCCCCCCCchHHHHHHHHHH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLI----LYYVAIHMDYRGHDLPPNGIVIAALIIFTI 400 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (494)
+......++..++.++.|+++||+|||+++..+.++.+++.++..+ .. +.+.+++..++
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l 128 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS-----------------SIAVMFVLLFL 128 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS-----------------SSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccc-----------------cHHHHHHHHHH
Confidence 3345567788999999999999999999999999999999888877 42 35667778889
Q ss_pred HhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhh
Q 011056 401 LGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 480 (494)
Q Consensus 401 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~ 480 (494)
.|++.+...+...+++.|.+|+ ++|++++|+.+....+|..++|.+++.+.+..| ++...|.+.+++.++..++.++
T Consensus 129 ~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 129 CGWFQGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTT--THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHCCc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998 899999999999999999999999999888765 2566777777777766665555
Q ss_pred cccCC
Q 011056 481 AIPRS 485 (494)
Q Consensus 481 ~~~~~ 485 (494)
..||+
T Consensus 206 ~~~~~ 210 (451)
T 1pw4_A 206 MMRDT 210 (451)
T ss_dssp HCCCS
T ss_pred hccCC
Confidence 55543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-12 Score=120.84 Aligned_cols=142 Identities=9% Similarity=0.079 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......+...+++++.|++.||+|||+.+..+..+.+++.+...+.+ +.+.+++...+.|++
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~ 101 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-----------------SLTVLIAASAMQGMG 101 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHH
Confidence 334556777889999999999999999999999999988888887764 567778888899999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
.+...+...+++.|..|+ ++|++++++.+....+|..++|.+++.+.+..+ +...+.+.++..++..+...+..||
T Consensus 102 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 102 TGVGGVMARTLPRDLYER--TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN--WRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHT--SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH--HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHhhhhhHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 999999999999999998 899999999999999999999999999998766 5667777777666666545555565
Q ss_pred CCC
Q 011056 485 SSA 487 (494)
Q Consensus 485 ~~~ 487 (494)
+++
T Consensus 178 ~~~ 180 (375)
T 2gfp_A 178 TRP 180 (375)
T ss_dssp CST
T ss_pred cCC
Confidence 543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-11 Score=119.83 Aligned_cols=115 Identities=11% Similarity=-0.108 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++..++.++.|++.||+|||+.+..+.++.+++.++...... . + +.+.+++..++.|++
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~--------~---~~~~l~~~~~l~G~~ 130 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---I--------M---NYTLFLVGLFIIAAG 130 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---T--------T---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc---c--------c---cHHHHHHHHHHHHhh
Confidence 3345567778899999999999999999999999999888887733210 0 1 477788888999999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhh-hh
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD-QL 455 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~-~~ 455 (494)
.+...+...+++.|.+|+ ++|++++++.+....+|..++|.+++.+. +.
T Consensus 131 ~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 131 LGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHHSSCS--TTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHhhhhHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999 99999999999999999999999999998 44
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-11 Score=123.21 Aligned_cols=177 Identities=10% Similarity=0.027 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcC------CCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011056 274 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYG------GEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 347 (494)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr 347 (494)
+.++.+.+..++...+++....+.+.|+.++ ++ .++. ...+......++..++.++.|+++||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~s~~----------~~g~~~~~~~~~~~~~~~~~G~l~dr 80 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-LLLSIPEELRGA----------VAKDVFHSFVIGVYFFPLLGGWIADR 80 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCCSSSTTTT----------THHHHHHHHHHHHHHTHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccccccCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777777777778777543 33 2221 12233445677788999999999999
Q ss_pred h-cchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCC
Q 011056 348 W-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 426 (494)
Q Consensus 348 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 426 (494)
+ |||+++..+.++.+++.++..+. +. +.+.+++..++.|++.+...+...+++.|.+|+ ++
T Consensus 81 ~~g~r~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~ 142 (524)
T 2xut_A 81 FFGKYNTILWLSLIYCVGHAFLAIF--------------EH--SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SN 142 (524)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHT--------------SS--CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST--TT
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHh--------------cc--cHHHHHHHHHHHHHhccccchhHHHHHHHHcCc--cc
Confidence 9 99999999988888888776665 20 256677778888999999889999999999998 78
Q ss_pred cchhhhH---HHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 427 QGLSLGV---LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 427 ~g~~~g~---~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
|++..+. .+....+|..++|.+.+.+.+..| +...|.+.+++.+++.+..++.
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG--AAVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC--HHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHHh
Confidence 8766655 889999999999999999988766 6667777777766665554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-10 Score=107.58 Aligned_cols=177 Identities=13% Similarity=0.073 Sum_probs=104.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011056 269 FRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 348 (494)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~ 348 (494)
+|+ |+++......++.+.++.....+.+.|+.++ ++.++.+ .+ +......++..+++++.|+++||+
T Consensus 4 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~s~~~---------~g-~~~~~~~~~~~i~~~~~G~lsDr~ 70 (417)
T 2cfq_A 4 LKN--TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDI-NHISKSD---------TG-IIFAAISLFSLLFQPLFGLLSDKL 70 (417)
T ss_dssp TSC--HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTT-TCCCTTT---------SH-HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHH---------HH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455 7888877777777777777777888888543 3333322 22 334456778899999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHH---HHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCC
Q 011056 349 GAGFIWGISNILMALCFLAM---LILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 425 (494)
Q Consensus 349 g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 425 (494)
|||+++..+..+.++..... .+... ..........+.+++.+...+.......+..++..+
T Consensus 71 Grr~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 134 (417)
T 2cfq_A 71 GLRKYLLWIITGMLVMFAPFFIFIFGPL----------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR 134 (417)
T ss_dssp TTCCHHHHHHHHTTSCHHHHHHHTHHHH----------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 99999988777654422111 11100 000011122233333333332333333333332114
Q ss_pred CcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHH
Q 011056 426 GQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLI 477 (494)
Q Consensus 426 ~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~ 477 (494)
+++..+|..+....+|..++|.+++.+.+. + +...|++.++..++..+.
T Consensus 135 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~--~~~~f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 135 RSNFEFGRARMFGCVGWALGASIVGIMFTI-N--NQFVFWLGSGCALILAVL 183 (417)
T ss_dssp HHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C--SHHHHTTTTTTTTTHHHH
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHh-c--hhHHHHHHHHHHHHHHHH
Confidence 567778887778889999999999998874 3 455566555544444333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.9e-08 Score=96.40 Aligned_cols=126 Identities=13% Similarity=0.008 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCC--CCchHHHHHHHHHHHhhHh
Q 011056 328 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLP--PNGIVIAALIIFTILGGPL 405 (494)
Q Consensus 328 ~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~ 405 (494)
....++.++++++.|+++||+|||+.+.++.++..++.++..+.......... ....+ ...+.+.+++.-++.|++.
T Consensus 62 s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-~~~~~~~~a~~~~~l~~~R~l~G~g~ 140 (491)
T 4gc0_A 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINP-DNTVPVYLAGYVPEFVIYRIIGGIGV 140 (491)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-SSSCCGGGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-hhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33567789999999999999999999999999988888876643100000000 00000 0125778888999999999
Q ss_pred hhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhc
Q 011056 406 AITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF 456 (494)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~ 456 (494)
|...+....+++|..|+ ++||...++.+.....|..+++.+...+....
T Consensus 141 G~~~~~~~~~i~E~~p~--~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 189 (491)
T 4gc0_A 141 GLASMLSPMYIAELAPA--HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSG 189 (491)
T ss_dssp HHHHHHHHHHHHTTSCG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhCCH--HhhhhhHHhhhhhhhhhhhhhhhcchhhcccc
Confidence 99999999999999999 99999999999999999988888877665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 494 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 8e-05 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 8e-04 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 42.5 bits (98), Expect = 8e-05
Identities = 46/389 (11%), Positives = 95/389 (24%), Gaps = 15/389 (3%)
Query: 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHF 89
F ++ I + II+ + L QPL G
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLL 66
Query: 90 SDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL 149
SD + G R+ + + V + L + F F
Sbjct: 67 SD----KLGLRKYLLWIITG-MLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121
Query: 150 DVANNMTQGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCAN 209
A K RR+ +F VG LG + + +
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-------NNQFVFWLGS 174
Query: 210 LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTF 269
+ ++F A T S++ +H + + + L+ + +
Sbjct: 175 GCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSC 234
Query: 270 RYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML 329
Y T+ G +F E+ G L+L
Sbjct: 235 TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLL 294
Query: 330 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAM--LILYYVAIHMDYRGHDLPP 387
++ + + + + + + I + + +
Sbjct: 295 AGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCF 354
Query: 388 NGIVIAALIIFTILGGPLAITYSVPYALV 416
A+I ++L G + + A +
Sbjct: 355 CFFKQLAMIFMSVLAGNMYESIGFQGAYL 383
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 39.3 bits (90), Expect = 8e-04
Identities = 56/453 (12%), Positives = 118/453 (26%), Gaps = 43/453 (9%)
Query: 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSD 91
++ + +L PY+ E G ++ F + ++G SD
Sbjct: 25 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD 84
Query: 92 RCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV 151
R R ++ L + +IAV ++
Sbjct: 85 ----RSNPRVFLPAGLILAA------------AVMLFMGFVPWATSSIAVMFVLLFLCGW 128
Query: 152 ANNMTQGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLK 211
M + + + + + G L F L A D
Sbjct: 129 FQGMGW--PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 186
Query: 212 SAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRY 271
I +A+ + + E ++F +
Sbjct: 187 YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVL 246
Query: 272 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNS 331
+ +W I I +L + L + ++ + + + L
Sbjct: 247 PNKLLWYIAIANVFVYLLRYGILDWSPTYL-----------KEVKHFALDKSSWAYFLYE 295
Query: 332 VVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIV 391
++L + K G M L +A ++ + P +
Sbjct: 296 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG--------NPTVDM 347
Query: 392 IAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGP 451
I ++I ++ GP+ + L + G + G L + V +
Sbjct: 348 ICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYLGGSVAASAIVG 401
Query: 452 WDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484
+ F G + + G S LA L+ ++ I
Sbjct: 402 YTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 434
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 494 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.35 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.13 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.6e-30 Score=251.29 Aligned_cols=376 Identities=13% Similarity=0.074 Sum_probs=238.4
Q ss_pred hHHHHHHHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHHHHHHHHHHHhhccccccccCCCC
Q 011056 53 LLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (494)
Q Consensus 53 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (494)
.+.++.+++|+|.++.|++.+++.++..+++++.|+++| |+||||.++. +.++.+++.+++++++.....+
T Consensus 46 ~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~---- 116 (447)
T d1pw4a_ 46 LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAAVMLFMGFVPWATSSI---- 116 (447)
T ss_dssp HHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHH-HHHHHHHHHHHHHHCHHHHSSS----
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchHHHHH-HHHHHHHHHhhccccchhhhhH----
Confidence 344456779999999999999999999999999999999 9999887665 6666666777666654321000
Q ss_pred CCcchHHHHHHHHHHhhccccccccc---cccchhhHHhHHHHHHHHHHHHHHhhhcccccccccchhhhcccccccccc
Q 011056 133 DFRPRAIAVFVFGFWILDVANNMTQG---KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCAN 209 (494)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 209 (494)
........+.+++.+........... ++++|++ +.++.+....+|..+++.+++.. ..+ ..+
T Consensus 117 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~g~~i~~~~~~~~-----~~~---------~~~ 181 (447)
T d1pw4a_ 117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGG-IVSVWNCAHNVGGGIPPLLFLLG-----MAW---------FND 181 (447)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHH-HHHHHHHHHHHHHTSHHHHHHHH-----HHH---------TCC
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccc-cccccccccchhhhhhhhhhhhH-----hhh---------hhc
Confidence 11111222222222222222222222 6777877 99999999999999998876542 111 126
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcccc-----ccchhhhhhHHHHHHHHhhhchHHHHHHHHHHH
Q 011056 210 LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH-----EQSSDVHEAFLWELFGTFRYFSGTIWIILIVTA 284 (494)
Q Consensus 210 ~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (494)
||+.|++.+.+.++..++.+...+|+|+.......++.+++. ++.+++.........+.+++ +.++......+
T Consensus 182 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 259 (447)
T d1pw4a_ 182 WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPN--KLLWYIAIANV 259 (447)
T ss_dssp STTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSC--HHHHHHHHHHH
T ss_pred ccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcC--chHHHHHHHhh
Confidence 888888888877777777777777776544322211111110 00011111111122334455 77777777777
Q ss_pred HHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Q 011056 285 LTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALC 364 (494)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 364 (494)
+..........+.+.++.+. ++.+. ...........+..+++.++.+++.||++|++..........+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 328 (447)
T d1pw4a_ 260 FVYLLRYGILDWSPTYLKEV-KHFAL----------DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 328 (447)
T ss_dssp HHHHHHHHHHHHHHHHBTTB-SCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred hhhhhhhcchhhhhhhcccc-ccccc----------chhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHH
Confidence 77777777777777777432 22111 12223344567778899999999999999876554443333332
Q ss_pred HHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHH-HHH
Q 011056 365 FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVI-PQI 443 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-g~~ 443 (494)
......... ....+.+...+..++.|++.+...+.......|.+|+ +.+|++.|+.+....+ |..
T Consensus 329 ~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~~g~~ 394 (447)
T d1pw4a_ 329 TIATIVYWM------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSV 394 (447)
T ss_dssp HHHHHHTTS------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHH
Confidence 222222210 1112456666677777888877777888899999998 8999999999988877 556
Q ss_pred HHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhc
Q 011056 444 VVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 481 (494)
Q Consensus 444 l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~ 481 (494)
++|.+.|.+.|..| +...+.+.+++.+++.++....
T Consensus 395 ~~~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 395 AASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHHHSSC--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999887 6666666666666665554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.8e-27 Score=226.69 Aligned_cols=389 Identities=15% Similarity=0.098 Sum_probs=239.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhHHHHH-HHhCCCchhHHHHHHHHHHHhhhhccccceecccccCCCCCcchhHHHHHH
Q 011056 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (494)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D~~~~r~Grr~~~l~~~~~ 109 (494)
+..|.++...+...+.++...+++|.+. +++|+|++++|++.+++.++..+++|+.|+++| |+||||.+++ +..
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~D----r~grr~~l~~-~~~ 81 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLW-IIT 81 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH----HHTTCTHHHH-HHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHH-HHH
Confidence 4556666666666677777778888866 568999999999999999999999999999999 9999998776 444
Q ss_pred HHHHHHHHHhhccccccccCCCCCCcchHHHHHHHHHHh-hccccccccc-------cccchhhHHhHHHHHHHHHHHHH
Q 011056 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWI-LDVANNMTQG-------KDHRRTRVANAYFSLFMAVGNIL 181 (494)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~r~~~~~~~~~~~~~~g~~~ 181 (494)
...++..+.....+.... ............. .......... +++++.....+........+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (417)
T d1pv7a_ 82 GMLVMFAPFFIFIFGPLL--------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153 (417)
T ss_dssp HHHHTHHHHHHHTHHHHH--------HTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhH--------HHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccc
Confidence 444445544444433110 0001111111111 1111111111 11222222566677777888888
Q ss_pred HhhhcccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccccccchhhhhhH
Q 011056 182 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 261 (494)
Q Consensus 182 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (494)
++.+++.. ..+ +|+..+........+..++..+..+|++...+++++.++.+ ++..
T Consensus 154 ~~~~~~~l-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 209 (417)
T d1pv7a_ 154 GASIVGIM-----FTI-----------NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH--------SAFS 209 (417)
T ss_dssp HHHHHHHH-----HHH-----------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------CCCC
T ss_pred cccccccc-----ccc-----------cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------cccc
Confidence 88887652 111 45666666666666666666677777665443321111100 1111
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 011056 262 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 341 (494)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 341 (494)
.+...+..++ +..+......................+.. .... ....+............+...++..+.
T Consensus 210 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (417)
T d1pv7a_ 210 LKLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFT-SFFA-------TGEQGTRVFGYVTTMGELLNASIMFFA 279 (417)
T ss_dssp HHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSS-------CHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred cccccccccc--ccccchhhhhHHHHHHHHhhhcccccccc-cccc-------ccccchhhhcccccccccccccchhhh
Confidence 1222222233 22222222222222211111111111111 0000 001111122233344567788889999
Q ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcc
Q 011056 342 EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 421 (494)
Q Consensus 342 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 421 (494)
+++.||.++|+.+..+..+.+++.+.+.+.. +.+..++...+.|++.+...+...+++.|.+|
T Consensus 280 ~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 342 (417)
T d1pv7a_ 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFAT-----------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFE 342 (417)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhhhcccccccchhhhHHHHHHhhhcccccc-----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999998888888777766552 46777778888999999999999999999999
Q ss_pred cCCCCcchhhhHH-HHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccCCCC
Q 011056 422 SLGLGQGLSLGVL-NLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 487 (494)
Q Consensus 422 ~~~~~~g~~~g~~-~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 487 (494)
+ +.+|+..|+. +....+|..++|.+.|++.|..| +...+.+.+++.++..++..+..+++++
T Consensus 343 ~--~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (417)
T d1pv7a_ 343 V--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp G--GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred H--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 9 9999999975 56778999999999999999988 6777888888887777777666655444
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=2.5e-11 Score=115.23 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhH
Q 011056 325 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 404 (494)
Q Consensus 325 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 404 (494)
+......++..+++++.|+++||+|||+++..+.++.+++.++..+...... +.+..++...+.|++
T Consensus 63 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~ 129 (447)
T d1pw4a_ 63 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS-------------SIAVMFVLLFLCGWF 129 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS-------------SSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh-------------hHHHHHHHHHHHHHh
Confidence 3344567778899999999999999999999999998888887765421110 345677778888999
Q ss_pred hhhhhhchhhhHhhhcccCCCCcchhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhccc
Q 011056 405 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 483 (494)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ 483 (494)
.+...+....++.|.+|+ ++|++++|+.+....+|..++|.+.+.+.+..+ ++...+.+.+.+.++..++.+...+
T Consensus 130 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 130 QGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHHTHHHHHHHHHTTCTT--THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhHHHHHHHHHHHh--hcccccccccccccchhhhhhhhhhhhHhhhhh-cccccchhhhhhHHHHHHHHHHhcc
Confidence 888888889999999998 899999999999999999999999888877654 3555666666666666555555444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=4.3e-10 Score=104.91 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=114.5
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011056 268 TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 347 (494)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr 347 (494)
.+|| |++|.+....++..++......+++.|+.++ ++.++. +.+ +......+...+++++.|+++||
T Consensus 3 ~lkn--~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~-~g~s~~---------~~g-~i~s~~~l~~~i~~~~~G~l~Dr 69 (417)
T d1pv7a_ 3 YLKN--TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDI-NHISKS---------DTG-IIFAAISLFSLLFQPLFGLLSDK 69 (417)
T ss_dssp HHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHH---------HHH-HHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCHH---------HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566 9999999999888888777777888887644 232221 122 33445677889999999999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCchHHHHHHHHHHHhhHhhhhhhchhhhHhhhcccCCCCc
Q 011056 348 WGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 427 (494)
Q Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (494)
+|||+.+.++..+..++............ .....+....+.+...+...........+..++..+++
T Consensus 70 ~grr~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (417)
T d1pv7a_ 70 LGLRKYLLWIITGMLVMFAPFFIFIFGPL-------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRS 136 (417)
T ss_dssp HTTCTHHHHHHHHHHHTHHHHHHHTHHHH-------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHHHHHHhhhhhh-------------HHHHHHHHHHHhhhcccccccchhhcccccccchhhhh
Confidence 99999999888887777776665520000 01111222223333333333333333333333222445
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCCcchHHHHHHHHHHHHHHHhhcccC
Q 011056 428 GLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 484 (494)
Q Consensus 428 g~~~g~~~~~~~~g~~l~~~~~g~l~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~ 484 (494)
....+........+..+++.+++.+.+..+ ...+........+..++..+..++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 190 (417)
T d1pv7a_ 137 NFEFGRARMFGCVGWALGASIVGIMFTINN---QFVFWLGSGCALILAVLLFFAKTD 190 (417)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHhhhhccccccccccccccccccc---cccccchhhHHHHHHHHHHHHhcc
Confidence 566777778888889999999998887643 334444444444444444444443
|