Citrus Sinensis ID: 011066

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----

MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA

ccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHccccccccccccccccccccEEEEEEEccccccccEEccHHHHHHHHHHHcccccccEEEEEccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEEEEcccccccEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHcccccccccccEEEcccccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccc

cHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccHHHcccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHccccHccEEEEEEcHcccccccccccEEEEcccccccccccccccccccccHHHHHHHHccccccccccccEEEEcccccEEEEEEEccccccEEEccccHHHcHHHHHHHHHHHHHcccccEEEEEEEEccccHHHccccccccEEEEEEccccccccccEEcccccccccccccccccccEEHHHHHccccccccHHHHHHHHHHHHHHHcccccccccEEEcccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccc

MTRLASGVLITLLVALAGiadgsrdiagdilklpsEAYRffhnggggakvnddddsvgTRWAVLLAGSngfwnyrhQADICHAYQLLrkgglkdenIIVFMyddiafneenprpgviinhphgddvykgvpkdytgedvtvENFFAVILGNktaltggsgkvvdsgpndhififysdhggpgvlgmptsryIYADELIDVLKKKHASGNYKSLVFYLEACesgsifegllpeglniyattasnaeesswgtycpgeipgpppeystclgdlysiawmedsdihnlrTETLHQQYELVKTRTAsynsygshvmqygdiglsknnlftylgtnpandnytfvdenslrpaskavnqrDADLLHFWDKyrkapegtprKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFgiekgpeilntvrpagqplvddwgCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQacenipsgpwssldkgfsa

MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYrkapegtpRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQAcenipsgpwssldkgfsa

*****SGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDE************RDADLLHFWDKY****************FFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIG*****************************

***LASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFF**************SVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKT***********SGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNP********************NQRDADLLHFW*******************FFE*M***MHVDHSIKLIGKLLFGIE*************QPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSS****F**

MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLLHFWDKYRKA**********QKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPW*********

MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFH*************SVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPAND******ENSLRPASKAVNQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSG***********

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		494	2.2.26 [Sep-21-2011]
P49043		494	Vacuolar-processing enzym	no	no	1.0	1.0	0.993	0.0
O24325		484	Vacuolar-processing enzym	N/A	no	0.927	0.946	0.762	0.0
Q39119		494	Vacuolar-processing enzym	yes	no	0.933	0.933	0.770	0.0
P49044		493	Vacuolar-processing enzym	N/A	no	0.983	0.985	0.720	0.0
P49047		478	Vacuolar-processing enzym	no	no	0.965	0.997	0.715	0.0
P49042		497	Vacuolar-processing enzym	N/A	no	0.894	0.889	0.624	1e-170
P49045		495	Vacuolar-processing enzym	no	no	0.914	0.913	0.593	1e-167
P49046		475	Legumain OS=Canavalia ens	N/A	no	0.953	0.991	0.569	1e-164
Q39044		486	Vacuolar-processing enzym	no	no	0.858	0.872	0.615	1e-161
O24326		493	Vacuolar-processing enzym	N/A	no	0.951	0.953	0.561	1e-160

>sp\|P49043\|VPE_CITSI Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1	Back alignment and function desciption

 Score = 1023 bits (2646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/494 (99%), Positives = 492/494 (99%)

Query: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60
           MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR
Sbjct: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60

Query: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120
           WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH
Sbjct: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120

Query: 121 PHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180
           PHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG
Sbjct: 121 PHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180

Query: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 240
           PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL EGLNIYATT
Sbjct: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYATT 240

Query: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR 300
           ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR
Sbjct: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR 300

Query: 301 TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL 360
           TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL
Sbjct: 301 TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL 360

Query: 361 HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA 420
           HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA
Sbjct: 361 HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA 420

Query: 421 GQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENI 480
           GQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENI
Sbjct: 421 GQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENI 480

Query: 481 PSGPWSSLDKGFSA 494
           PSGPWSSLDKGFSA
Sbjct: 481 PSGPWSSLDKGFSA 494

Asparagine-specific endopeptidase that may be involved in processing of proteins targeted to vacuoles that accumulate during ethylene-regulated processes such as flower opening and flavedo degreening.
Citrus sinensis (taxid: 2711)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp\|O24325\|VPE1_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1	Back alignment and function description

>sp\|Q39119\|VPEG_ARATH Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2	Back alignment and function description

>sp\|P49044\|VPE_VICSA Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1	Back alignment and function description

>sp\|P49047\|VPEA_ARATH Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2	Back alignment and function description

>sp\|P49042\|VPE_RICCO Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1	Back alignment and function description

>sp\|P49045\|VPE_SOYBN Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1	Back alignment and function description

>sp\|P49046\|LEGU_CANEN Legumain OS=Canavalia ensiformis PE=1 SV=1	Back alignment and function description

>sp\|Q39044\|VPEB_ARATH Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3	Back alignment and function description

>sp\|O24326\|VPE2_PHAVU Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		494
1351408		494	RecName: Full=Vacuolar-processing enzyme	1.0	1.0	0.993	0.0
255550848		492	Vacuolar-processing enzyme precursor, pu	0.987	0.991	0.803	0.0
237861979		494	vacuolar processing enzyme [Malus hupehe	0.997	0.997	0.8	0.0
224141591		489	predicted protein [Populus trichocarpa]	0.987	0.997	0.820	0.0
233142300		493	vacuolar processing enzyme a [Populus to	0.995	0.997	0.824	0.0
224088921		493	predicted protein [Populus trichocarpa]	0.995	0.997	0.824	0.0
225429442		493	PREDICTED: vacuolar-processing enzyme [V	0.973	0.975	0.806	0.0
147799465		493	hypothetical protein VITISV_040193 [Viti	0.949	0.951	0.822	0.0
356514571		484	PREDICTED: vacuolar-processing enzyme-li	0.967	0.987	0.792	0.0
34530959		483	unnamed protein product [Homo sapiens]	0.965	0.987	0.790	0.0

>gi\|1351408\|sp\|P49043.1\|VPE_CITSI RecName: Full=Vacuolar-processing enzyme; Short=VPE; Flags: Precursor gi\|633185\|emb\|CAA87720.1\| cystein proteinase (by similarity) [Citrus sinensis] gi\|1588548\|prf\|\|2208463A vascular processing protease	Back alignment and taxonomy information

 Score = 1023 bits (2646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/494 (99%), Positives = 492/494 (99%)

Query: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60
           MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR
Sbjct: 1   MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTR 60

Query: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120
           WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH
Sbjct: 61  WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH 120

Query: 121 PHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180
           PHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG
Sbjct: 121 PHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGG 180

Query: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATT 240
           PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL EGLNIYATT
Sbjct: 181 PGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYATT 240

Query: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR 300
           ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR
Sbjct: 241 ASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTR 300

Query: 301 TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL 360
           TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL
Sbjct: 301 TASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDADLL 360

Query: 361 HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA 420
           HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA
Sbjct: 361 HFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPA 420

Query: 421 GQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENI 480
           GQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENI
Sbjct: 421 GQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENI 480

Query: 481 PSGPWSSLDKGFSA 494
           PSGPWSSLDKGFSA
Sbjct: 481 PSGPWSSLDKGFSA 494

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255550848\|ref\|XP_002516472.1\| Vacuolar-processing enzyme precursor, putative [Ricinus communis] gi\|223544292\|gb\|EEF45813.1\| Vacuolar-processing enzyme precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|237861979\|gb\|ACR24644.1\| vacuolar processing enzyme [Malus hupehensis var. mengshanensis]	Back alignment and taxonomy information

>gi\|224141591\|ref\|XP_002324151.1\| predicted protein [Populus trichocarpa] gi\|222865585\|gb\|EEF02716.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|233142300\|gb\|ACQ91103.1\| vacuolar processing enzyme a [Populus tomentosa]	Back alignment and taxonomy information

>gi\|224088921\|ref\|XP_002308580.1\| predicted protein [Populus trichocarpa] gi\|222854556\|gb\|EEE92103.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225429442\|ref\|XP_002276759.1\| PREDICTED: vacuolar-processing enzyme [Vitis vinifera] gi\|296081609\|emb\|CBI20614.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147799465\|emb\|CAN70603.1\| hypothetical protein VITISV_040193 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356514571\|ref\|XP_003525979.1\| PREDICTED: vacuolar-processing enzyme-like [Glycine max]	Back alignment and taxonomy information

>gi\|34530959\|dbj\|BAC86022.1\| unnamed protein product [Homo sapiens]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		494
TAIR\|locus:2123782		494	GAMMA-VPE "gamma vacuolar proc	0.987	0.987	0.747	3.1e-209
TAIR\|locus:2043510		478	ALPHA-VPE "alpha-vacuolar proc	0.931	0.962	0.742	2.6e-196
TAIR\|locus:2026242		486	BETA-VPE "beta vacuolar proces	0.858	0.872	0.615	8.8e-150
TAIR\|locus:2087625		466	DELTA-VPE "delta vacuolar proc	0.862	0.914	0.552	1.5e-129
ZFIN\|ZDB-GENE-021030-1		438	lgmn "legumain" [Danio rerio (	0.797	0.899	0.394	3.3e-79
UNIPROTKB\|E2QXF2		433	LGMN "Uncharacterized protein"	0.548	0.625	0.506	4.6e-78
UNIPROTKB\|Q86TV3		376	LGMN "Full-length cDNA clone C	0.548	0.720	0.503	1.4e-76
RGD\|619832		435	Lgmn "legumain" [Rattus norveg	0.550	0.625	0.513	1.7e-75
UNIPROTKB\|Q9R0J8		435	Lgmn "Legumain" [Rattus norveg	0.550	0.625	0.513	1.7e-75
UNIPROTKB\|Q99538		433	LGMN "Legumain" [Homo sapiens	0.548	0.625	0.503	2.5e-74

TAIR\|locus:2123782 GAMMA-VPE "gamma vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2023 (717.2 bits), Expect = 3.1e-209, P = 3.1e-209
 Identities = 371/496 (74%), Positives = 425/496 (85%)

Query:     1 MTRLASGV-LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGT 59
             MTR++ GV L  LLV+L  ++  +R    D++KLPS+A RFF         NDDD + GT
Sbjct:     5 MTRVSVGVVLFVLLVSLVAVS-AARSGPDDVIKLPSQASRFFRPAE-----NDDDSNSGT 58

Query:    60 RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIIN 119
             RWAVL+AGS+G+WNYRHQADICHAYQLLRKGGLK+ENI+VFMYDDIA N ENPRPG IIN
Sbjct:    59 RWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIIN 118

Query:   120 HPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHG 179
              PHG DVY+GVPKDYTG+DV V+N FAVILG+KTA+ GGSGKVVDSGPNDHIFIFYSDHG
Sbjct:   119 SPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDHG 178

Query:   180 GPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYAT 239
             GPGVLGMPTS Y+YA++L DVLKKKHA G YKSLVFYLEACESGSIFEGLLPEGLNIYAT
Sbjct:   179 GPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEACESGSIFEGLLPEGLNIYAT 238

Query:   240 TASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKT 299
             TASNAEESSWGTYCPGE P PPPEY TCLGDLYS+AWMEDS +HNL+TETLHQQYELVK 
Sbjct:   239 TASNAEESSWGTYCPGEEPSPPPEYETCLGDLYSVAWMEDSGMHNLQTETLHQQYELVKR 298

Query:   300 RTASYN-SYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAVNQRDAD 358
             RTA    SYGSHVMQYGD+G+SK+NL  Y+GTNPANDN+TF D NSL+P S+  NQRDAD
Sbjct:   299 RTAPVGYSYGSHVMQYGDVGISKDNLDLYMGTNPANDNFTFADANSLKPPSRVTNQRDAD 358

Query:   359 LLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVR 418
             L+HFW+KYRKAPEG+ RK EAQKQ  EAMSHR+H+D+S+ L+GK+LFGI +GPE+LN VR
Sbjct:   359 LVHFWEKYRKAPEGSARKTEAQKQVLEAMSHRLHIDNSVILVGKILFGISRGPEVLNKVR 418

Query:   419 PAGQPLVDDWGCLKSLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACE 478
              AGQPLVDDW CLK+ VR FE HCG+LSQYG+KHMRS ANICN GI  E+M EA++QAC 
Sbjct:   419 SAGQPLVDDWNCLKNQVRAFERHCGSLSQYGIKHMRSFANICNAGIQMEQMEEAASQACT 478

Query:   479 NIPSGPWSSLDKGFSA 494
              +P+GPWSSL++GFSA
Sbjct:   479 TLPTGPWSSLNRGFSA 494

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0000323 "lytic vacuole" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0006624 "vacuolar protein processing" evidence=ISS

TAIR\|locus:2043510 ALPHA-VPE "alpha-vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026242 BETA-VPE "beta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087625 DELTA-VPE "delta vacuolar processing enzyme" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-021030-1 lgmn "legumain" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QXF2 LGMN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TV3 LGMN "Full-length cDNA clone CS0DB001YK19 of Neuroblastoma of Homo sapiens (human)" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|619832 Lgmn "legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9R0J8 Lgmn "Legumain" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q99538 LGMN "Legumain" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49044	VPE_VICSA	3, ., 4, ., 2, 2, ., -	0.7203	0.9838	0.9858	N/A	no
P49047	VPEA_ARATH	3, ., 4, ., 2, 2, ., -	0.7151	0.9655	0.9979	no	no
P49046	LEGU_CANEN	3, ., 4, ., 2, 2, ., 3, 4	0.5693	0.9534	0.9915	N/A	no
Q9R0J8	LGMN_RAT	3, ., 4, ., 2, 2, ., 3, 4	0.3891	0.8299	0.9425	yes	no
P49043	VPE_CITSI	3, ., 4, ., 2, 2, ., -	0.9939	1.0	1.0	no	no
P49042	VPE_RICCO	3, ., 4, ., 2, 2, ., -	0.6247	0.8947	0.8893	N/A	no
O89017	LGMN_MOUSE	3, ., 4, ., 2, 2, ., 3, 4	0.3918	0.8259	0.9379	yes	no
Q39119	VPEG_ARATH	3, ., 4, ., 2, 2, ., -	0.7708	0.9331	0.9331	yes	no
Q95M12	LGMN_BOVIN	3, ., 4, ., 2, 2, ., 3, 4	0.3865	0.8198	0.9353	yes	no
O24325	VPE1_PHAVU	3, ., 4, ., 2, 2, ., -	0.7627	0.9271	0.9462	N/A	no
O24326	VPE2_PHAVU	3, ., 4, ., 2, 2, ., -	0.5614	0.9514	0.9533	N/A	no
Q99538	LGMN_HUMAN	3, ., 4, ., 2, 2, ., 3, 4	0.3851	0.8198	0.9353	yes	no
Q5R5D9	LGMN_PONAB	3, ., 4, ., 2, 2, ., 3, 4	0.3821	0.8259	0.9422	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	0.963
3rd Layer	3.4.22.34	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		494
pfam01650		258	pfam01650, Peptidase_C13, Peptidase C13 family	1e-160
COG5206		382	COG5206, GPI8, Glycosylphosphatidylinositol transa	2e-25

>gnl\|CDD\|216627 pfam01650, Peptidase_C13, Peptidase C13 family	Back alignment and domain information

 Score =  453 bits (1168), Expect = e-160
 Identities = 177/271 (65%), Positives = 210/271 (77%), Gaps = 13/271 (4%)

Query: 60  RWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIIN 119
            WAVL+AGSNG++NYRHQAD+CHAYQLL+K G+KDENIIV MYDDIA N ENP PG I N
Sbjct: 1   LWAVLVAGSNGYYNYRHQADVCHAYQLLKKFGIKDENIIVMMYDDIANNPENPFPGKIFN 60

Query: 120 HPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHG 179
            P+G DVYKGVP DYTG DVT  NF AV+LG+K+AL  GSGKV+ SGPND++FI+++DHG
Sbjct: 61  KPNGTDVYKGVPIDYTGNDVTPRNFLAVLLGDKSALK-GSGKVLKSGPNDNVFIYFTDHG 119

Query: 180 GPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYAT 239
            PGVLG P   Y+YA +L + LKK HA G YK LVFY+EACESGS+FEG LP+ +NIYAT
Sbjct: 120 APGVLGFPELDYLYAKDLAEALKKMHARGKYKKLVFYVEACESGSMFEG-LPKDINIYAT 178

Query: 240 TASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKT 299
           TA+NA+ESSWGTYC      P PE  TCLGDL+S+ WMEDSD H+L  ETL QQ+ELVK 
Sbjct: 179 TAANADESSWGTYC------PDPEDGTCLGDLFSVNWMEDSDDHDLSKETLEQQFELVKN 232

Query: 300 RTASYNSYGSHVMQYGDIGLSKNNLFTYLGT 330
           RT      GSHVMQYGD  + +  +  + GT
Sbjct: 233 RTT-----GSHVMQYGDKSIPQLPVSLFQGT 258

Members of this family are asparaginyl peptidases. The blood fluke parasite Schistosoma mansoni has at least five Clan CA cysteine peptidases in its digestive tract including cathepsins B (2 isoforms), C, F and L. All have been recombinantly expressed as active enzymes, albeit in various stages of activation. In addition, a Clan CD peptidase, termed asparaginyl endopeptidase or 'legumain' has been identified. This has formerly been characterized as a 'haemoglobinase', but this term is probably incorrect. Two cDNAs have been described for Schistosoma mansoni legumain; one encodes an active enzyme whereas the active site cysteine residue encoded by the second cDNA is substituted by an asparagine residue. Both forms have been recombinantly expressed. Length = 258

>gnl\|CDD\|227531 COG5206, GPI8, Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		494
KOG1348		477	consensus Asparaginyl peptidases [Posttranslationa	100.0
PF01650		256	Peptidase_C13: Peptidase C13 family; InterPro: IPR	100.0
KOG1349		309	consensus Gpi-anchor transamidase [Posttranslation	100.0
COG5206		382	GPI8 Glycosylphosphatidylinositol transamidase (GP	100.0
PF00656		248	Peptidase_C14: Caspase domain; InterPro: IPR011600	99.09
KOG1546		362	consensus Metacaspase involved in regulation of ap	98.31
smart00115		241	CASc Caspase, interleukin-1 beta converting enzyme	96.76
cd00032		243	CASc Caspase, interleukin-1 beta converting enzyme	96.46
PF14538		154	Raptor_N: Raptor N-terminal CASPase like domain	90.57
PF12770		287	CHAT: CHAT domain	82.95

>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=5.8e-166  Score=1246.56  Aligned_cols=452  Identities=65%  Similarity=1.139  Sum_probs=434.7

Q ss_pred             cCccccccccCCCCCCCCCCCCCCCCCeEEEEEeccCCCCcchhhHHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCC
Q 011066           33 LPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENP  112 (494)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wAVlVagS~gw~NYRHqadv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np  112 (494)
                      +|.-.++|++|       .++++.+|++||||||||+||||||||||||||||+||++|||+||||||||||||+||+||
T Consensus        26 ~~~la~~~~~p-------~d~~ddggt~waVLVAGSngyyNYRHQADvcHAYqiLrkgGikeEnIvv~MYDDIA~~~~NP   98 (477)
T KOG1348|consen   26 LPLLASGFARP-------ADDDDDGGTRWAVLVAGSNGYYNYRHQADVCHAYQILRKGGIKEENIVVMMYDDIANNEENP   98 (477)
T ss_pred             CccccccccCc-------CcCCccCceeEEEEEecCCcccchhhhhhHHHHHHHHHhcCCCchhEEEEEehhhhcCCCCC
Confidence            44444566765       23344448999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEeeCCCCCCccCCccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCc
Q 011066          113 RPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYI  192 (494)
Q Consensus       113 ~pG~i~n~~~g~dvY~gv~iDY~g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L  192 (494)
                      +||+|||+|+|+|||+||++||||++||++||++||+|++++++|||||||+|+|||||||||+||||||+|+||+++.|
T Consensus        99 rpG~iiN~P~G~DvY~GvpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pGvl~mP~~~~l  178 (477)
T KOG1348|consen   99 RPGVIINRPNGKDVYQGVPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPGVLGMPTSPDL  178 (477)
T ss_pred             CCceeecCCCchhhhcCCCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCceEecCCCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCceEEEEeccccccccccccCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhh
Q 011066          193 YADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLY  272 (494)
Q Consensus       193 ~a~dL~~~L~~m~~~~~Ykklv~~iEAC~SGSmf~~llp~~~nV~~iTASn~~EsSya~yc~~~~~~~~~~~~tcLgD~f  272 (494)
                      +++||+++|++||+.++||+||||+||||||||||++||+++||||+||||+.||||+||||+++|+||+++.|||||+|
T Consensus       179 ~akdlnevL~kmhk~k~Y~~mvfYlEACESGSmfegiLp~~lnIYatTAaNa~ESSwgtycp~~~psppse~~tcLGDly  258 (477)
T KOG1348|consen  179 YAKDLNEVLKKMHKSKTYKKMVFYLEACESGSMFEGILPKNLNIYATTAANARESSWGTYCPGEYPSPPSEYSTCLGDLY  258 (477)
T ss_pred             hHHHHHHHHHHHHhccchheEEEEeeeccCcchhhhhccCCCcEEEeecCCccccccceeCCCCCCCChhhcccccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccccccccccccHHHHHHHHHhhccCCCCCCCCceeecCCcccccchhhhcccCCCCCCccccCCCCCCcCCccc
Q 011066          273 SIAWMEDSDIHNLRTETLHQQYELVKTRTASYNSYGSHVMQYGDIGLSKNNLFTYLGTNPANDNYTFVDENSLRPASKAV  352 (494)
Q Consensus       273 S~~wmedsd~~~l~~eTl~~qf~~vk~~t~~~~~~~Shv~~yGd~~~~~~~l~~f~G~~~~~~~~~~~~~~~~~~~~~~v  352 (494)
                      ||+||||||.|||++|||+|||+.||+||+....+|||||||||..|++++|..|||.+|+++||+|. +.+..+++..+
T Consensus       259 SV~WmeDSd~hdL~kETL~qQYhlVK~rt~~s~s~gsHVmqyGd~~iske~l~lfqG~~pa~~nf~l~-~~s~~~~s~~~  337 (477)
T KOG1348|consen  259 SVNWMEDSDVHDLKKETLHQQYHLVKKRTNTSYSYGSHVMQYGDKTISKEKLMLFQGMKPANENFTLP-ASSHKSPSGLT  337 (477)
T ss_pred             eeeeeccCccccchHHHHHHHHHHHHHhcCCCCCCcceeeecCcchhhHHHHHHHcCCCcccCCCCCC-ccCcCCccccC
Confidence            99999999999999999999999999999998779999999999999999999999999999999887 55566688999


Q ss_pred             cCcchhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccCCCCCCCcCccchHH
Q 011066          353 NQRDADLLHFWDKYRKAPEGTPRKAEAQKQFFEAMSHRMHVDHSIKLIGKLLFGIEKGPEILNTVRPAGQPLVDDWGCLK  432 (494)
Q Consensus       353 ~~rda~L~~l~~k~~~~~~~~~~k~~a~~~l~~~l~~R~~id~sv~~I~~ll~g~~~~~~~l~~~r~~g~plvddwdCyK  432 (494)
                      ||||+||++||+|++++++++.++.++++||.+++.||+|||++|..|+.++||. ++..+|+.+|+.|+||+|||+|+|
T Consensus       338 n~rD~~L~~l~~k~rka~dgs~~s~e~~k~i~~~~~hR~~id~sV~~I~~llf~~-~~~~~l~~vr~~g~Plvddw~C~k  416 (477)
T KOG1348|consen  338 NQRDAPLLHLWRKYRKANDGSAESRELQKEILRHKDHRKHIDKSVRLIVSLLFGS-EGEAVLNQVRSEGQPLVDDWDCLK  416 (477)
T ss_pred             CCCCccHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHhhcCCCCccchHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988 556789999999999999999999


Q ss_pred             HHHHHHhhhcCCCchhhhhHHHHHHHHhccCCCHHHHHHHHHhhhcCCCCCCCCCcccCCC
Q 011066          433 SLVRTFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFS  493 (494)
Q Consensus       433 ~~V~~Fe~~CGsl~qY~~k~~r~faNlC~~G~~~~~m~~a~~~~C~~~~~~~~~~~~~~~~  493 (494)
                      ++|++|++|||+++||||||||+|+||||.|++.++|.+|+.++|.+++..+|+++.+|||
T Consensus       417 ~~v~~F~~hCg~~~~YglKh~~~~aN~Cn~g~~~e~~~~A~~~aC~~~~~~~~~~~~~gfs  477 (477)
T KOG1348|consen  417 SAVRHFETHCGSTYEYGLKHMRVLANMCNKGVPLEQIELAMDQACLGIYTEPWSSLRRGFS  477 (477)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhHhcCCccccchhhcccCC
Confidence            9999999999999999999999999999999999999999999999999999999999997

>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues	Back alignment and domain information

>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis)	Back alignment and domain information

>PF14538 Raptor_N: Raptor N-terminal CASPase like domain	Back alignment and domain information

>PF12770 CHAT: CHAT domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		494
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 61/492 (12%), Positives = 108/492 (21%), Gaps = 188/492 (38%)

Query: 30  ILKLPSEAYRFFHNGGGGA-K---VND--DDDSVGTRWAVLLAGSNGFW----NYRHQAD 79
           +L+L          G  G+ K     D      V  +          FW    N      
Sbjct: 144 LLELRPAKNVLID-GVLGSGKTWVALDVCLSYKVQCK-----MDFKIFWLNLKNCNSPET 197

Query: 80  ICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGV---IINHPHG------DDVYKGV 130
           +    Q L      +         +I     + +  +   + + P+        +V    
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--- 254

Query: 131 PKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG-------- 182
                  +    N F   L  K  LT    +V D            DH            
Sbjct: 255 -------NAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 183 ----VLGMPTS-------------------------------RYIYADEL-------IDV 200
                L                                    +++  D+L       ++V
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 201 LKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWG---TYCPGEI 257
           L+       +  L          S+F    P   +I            W          +
Sbjct: 366 LEPAEYRKMFDRL----------SVF----PPSAHIPTILL----SLIWFDVIKSDVMVV 407

Query: 258 ----------PGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQ----QYELVKTRTAS 303
                        P E +  +  +Y      +  +       LH+     Y + KT  + 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYL-----ELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 304 -----------YNSYGSHVMQYGDIGLSKNNLFT--YL-----------------GTNPA 333
                      Y+  G H+         +  LF   +L                  +   
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPE--RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 334 ND------NY-TFVDENS--------------LRPASKAVNQRDADLLHFWDKYRKA--P 370
            +       Y  ++ +N                +     +  +  DLL        A   
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI------ALMA 574

Query: 371 EGTPRKAEAQKQ 382
           E      EA KQ
Sbjct: 575 EDEAIFEEAHKQ 586

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		494
3bij_A		285	Uncharacterized protein GSU0716; alpha-beta protei	99.52
4af8_A		367	Metacaspase MCA2; hydrolase, cysteine peptidase, c	99.29
4f6o_A		350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	99.29
3uoa_B		390	Mucosa-associated lymphoid tissue lymphoma transl	98.74
2j32_A		250	Caspase-3; Pro-caspase3, thiol protease, hydrolase	95.78
4ehd_A		277	Caspase-3; caspase, apoptosis, allosteric inhibiti	95.64
1m72_A		272	Caspase-1; caspase, cysteine protease, hydrolase-h	95.53
3sir_A		259	Caspase; hydrolase; 2.68A {Drosophila melanogaster	95.28
1f1j_A		305	Caspase-7 protease; caspase-7, cysteine protease,	95.23
3od5_A		278	Caspase-6; caspase domain, apoptotic protease, hyd	94.81
3h11_B		271	Caspase-8; cell death, apoptosis, caspase, alterna	94.62
2nn3_C		310	Caspase-1; cysteine protease, hydrolase; 3.00A {Sp	94.54
3e4c_A		302	Caspase-1; zymogen, inflammasome, ICE, IL-1B, inna	94.23
2h54_A		178	Caspase-1; allosteric site, dimer interface, hydro	93.93
1nw9_B		277	Caspase 9, apoptosis-related cysteine protease; XI	93.72
2fp3_A		316	Caspase NC; apoptosis, initiator caspase activatio	92.53
1pyo_A		167	Caspase-2; apoptosis, caspase, alpha-beta, thiol p	85.41
2dko_A		146	Caspase-3; low barrier hydrogen bond, caspase, dru	82.33

>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}	Back alignment and structure

Probab=99.52  E-value=6.9e-14  Score=139.18  Aligned_cols=188  Identities=14%  Similarity=0.152  Sum_probs=136.0

Q ss_pred             CCeEEEEEeccCC----C----Ccchh-hHHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccC
Q 011066           58 GTRWAVLLAGSNG----F----WNYRH-QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYK  128 (494)
Q Consensus        58 ~~~wAVlVagS~g----w----~NYRH-qadv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np~pG~i~n~~~g~dvY~  128 (494)
                      +++||+||+-+++    |    .+-+- ..|+..+.++|++.||+   |++++.+                         
T Consensus         2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~~~Gf~---v~~l~~~-------------------------   53 (285)
T 3bij_A            2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAAERGFA---VTTLMTK-------------------------   53 (285)
T ss_dssp             CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHHHTTCE---EEEEEGG-------------------------
T ss_pred             CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHHHcCCc---eEEecCC-------------------------
Confidence            4789999999873    2    12222 37899999999999997   6666532                         


Q ss_pred             CccccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCC-------------CcccCCCCCCcCHH
Q 011066          129 GVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGP-------------GVLGMPTSRYIYAD  195 (494)
Q Consensus       129 gv~iDY~g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~-------------g~l~fpd~~~L~a~  195 (494)
                               +.|.+|+++.|..-          +-+..|+|.+||||+|||..             ++|...|+. |..+
T Consensus        54 ---------~~t~~~i~~al~~l----------~~~~~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~~-i~~~  113 (285)
T 3bij_A           54 ---------AATRAKVIDAIGKA----------AKALGKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDGE-LIDD  113 (285)
T ss_dssp             ---------GCCHHHHHHHHHHH----------HHHCCTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSSE-EEHH
T ss_pred             ---------ccCHHHHHHHHHHH----------HHhCCCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCCC-ccHH
Confidence                     25889999888621          11346789999999999962             355555554 7788


Q ss_pred             HHHHHHHHHHHcCCCceEEEEeccccccccccc----------------------cCC----------------------
Q 011066          196 ELIDVLKKKHASGNYKSLVFYLEACESGSIFEG----------------------LLP----------------------  231 (494)
Q Consensus       196 dL~~~L~~m~~~~~Ykklv~~iEAC~SGSmf~~----------------------llp----------------------  231 (494)
                      +|.+.|+.+.   .-+++++++|||+||++.+.                      .+|                      
T Consensus       114 ~l~~~l~~l~---~~~~~~vilD~C~SG~~~~~~p~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~  190 (285)
T 3bij_A          114 ELYALLGKFA---AGVRVLVFSDSCHSGTVVKMAYYNGTTAARSAGPDEGEIRYRAMPQSVAMRTYRANREFYDTIQQKT  190 (285)
T ss_dssp             HHHHHHTTSC---SSCEEEEEEECCCCCCHHHHHHTTC-------------CEESBCCHHHHHHHHHHTHHHHHHHHHHC
T ss_pred             HHHHHHHhcc---CCCeEEEEEecCCCCccccccccccccccccccccccccceeecCchhhhhhhhcchhHHHHHhhhc
Confidence            9998887662   35789999999999998762                      011                      


Q ss_pred             -------CCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhhhhhccccccccccccccHHHHHHHHHhhccCC
Q 011066          232 -------EGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTASY  304 (494)
Q Consensus       232 -------~~~nV~~iTASn~~EsSya~yc~~~~~~~~~~~~tcLgD~fS~~wmedsd~~~l~~eTl~~qf~~vk~~t~~~  304 (494)
                             ...++++++|+.++|.||-.-          ..     -+||.+.++-..... ...|+.++++.|++++.. 
T Consensus       191 ~~~~~~~~~~~~i~lsa~~~~q~A~e~~----------~~-----G~FT~aLl~~L~~~~-~~~s~~~l~~~v~~~~~~-  253 (285)
T 3bij_A          191 KKVDLADVKASILLISGCQDNQLSQDGA----------FN-----GAFTGQLLRVWKNGL-YKGSYRSFHKAIVRRMPP-  253 (285)
T ss_dssp             CCCCTTTCSSEEEEEESSCTTSCCEECS----------SS-----CHHHHHHHHHHGGGT-CCSCHHHHHHHHHHHSCT-
T ss_pred             ccccccCCCCCEEEEEeCCCCccccccc----------cC-----CHHHHHHHHHHhhCC-CCcCHHHHHHHHHHhcCC-
Confidence                   123689999999999998531          12     378888776433222 246999999999998864 


Q ss_pred             CCCCCCceeecC
Q 011066          305 NSYGSHVMQYGD  316 (494)
Q Consensus       305 ~~~~Shv~~yGd  316 (494)
                         .+||+.||.
T Consensus       254 ---~Q~P~~~~~  262 (285)
T 3bij_A          254 ---DQTPNFFTA  262 (285)
T ss_dssp             ---TCCCEEEEE
T ss_pred             ---CCCcceeCC
Confidence               589999885

PyMOL of 3bij

>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A	Back alignment and structure

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}	Back alignment and structure

>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*	Back alignment and structure

>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A	Back alignment and structure

>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A	Back alignment and structure

>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B	Back alignment and structure

>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A	Back alignment and structure

>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*	Back alignment and structure

>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*	Back alignment and structure

>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*	Back alignment and structure

>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}	Back alignment and structure

>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}	Back alignment and structure

>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...	Back alignment and structure

>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A	Back alignment and structure

>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}	Back alignment and structure

>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A	Back alignment and structure

>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		494
g1qtn.1		242	Caspase-8 {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1nw9b_		277	Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	97.97
g1sc3.1		261	Interleukin-1beta converting enzyme (a cysteine pr	97.6
g1pyo.1		257	Caspase-2 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1m72a_		256	Caspase-1 {Fall armyworm (Spodoptera frugiperda) [	97.14
g1nme.1		238	Apopain (caspase-3, cpp32) {Human (Homo sapiens) [	96.81
d1f1ja_		245	Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	96.29

>d1nw9b_ c.17.1.1 (B:) Caspase-9 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.2e-05  Score=72.64  Aligned_cols=181  Identities=16%  Similarity=0.190  Sum_probs=103.6

Q ss_pred             CeEEEEEeccCCCCcc-----hh--hHHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccCCcc
Q 011066           59 TRWAVLLAGSNGFWNY-----RH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVP  131 (494)
Q Consensus        59 ~~wAVlVagS~gw~NY-----RH--qadv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np~pG~i~n~~~g~dvY~gv~  131 (494)
                      .-+|+||.=.++ .+-     |+  ..|+-.+-.+|++.||   ++++..                              
T Consensus        21 rG~aLII~n~~f-~~~~~l~~r~Ga~~Da~~l~~~l~~lGF---~V~~~~------------------------------   66 (277)
T d1nw9b_          21 CGHCLIINNVNF-CRESGLRTRTGSNIDCEKLRRRFSSLHF---MVEVKG------------------------------   66 (277)
T ss_dssp             CEEEEEEECCCC-CGGGTCCCCTTHHHHHHHHHHHHHHTTE---EEEEEE------------------------------
T ss_pred             ccEEEEEeCccC-CCccCCCCCCCcHHHHHHHHHHHHHCCC---EEEEee------------------------------
Confidence            459999977664 221     22  3699999999999999   344432                              


Q ss_pred             ccCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCC-cc------cCCCCCCcCHHHHHHHHHHH
Q 011066          132 KDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPG-VL------GMPTSRYIYADELIDVLKKK  204 (494)
Q Consensus       132 iDY~g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g-~l------~fpd~~~L~a~dL~~~L~~m  204 (494)
                            ++|.+.+.+.|..-..       +  ..++.|.++|||+|||... .+      .-+++..+.-+++...+...
T Consensus        67 ------nlt~~~~~~~l~~~~~-------~--~~~~~d~~v~~~~gHG~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  131 (277)
T d1nw9b_          67 ------DLTAKKMVLALLELAR-------Q--DHGALDCCVVVILSHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGT  131 (277)
T ss_dssp             ------SCCHHHHHHHHHHHHH-------S--CCTTCSEEEEEEEEEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTT
T ss_pred             ------CCCHHHHHHHHHHhhh-------h--cccCCCEEEEEEeCCCcccccccccCcccCCccccccHHHHHHHhHHh
Confidence                  3577777777652111       1  1256799999999999642 12      22344445555655544321


Q ss_pred             H-HcCCCceEEEEeccccccccccc--------------------------------------cCCCCCcEEEEeecCCC
Q 011066          205 H-ASGNYKSLVFYLEACESGSIFEG--------------------------------------LLPEGLNIYATTASNAE  245 (494)
Q Consensus       205 ~-~~~~Ykklv~~iEAC~SGSmf~~--------------------------------------llp~~~nV~~iTASn~~  245 (494)
                      . ..-+-|..+|++|||+++.+-.+                                      .+|...++++.-|+.++
T Consensus       132 ~~~~l~~kpki~~idaCr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~i~~st~~g  211 (277)
T d1nw9b_         132 SCPSLGGKPKLFFIQACGGEQKDHGFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPG  211 (277)
T ss_dssp             TCGGGTTSCEEEEEEEEC---------------------------CBCCC------------CCCCCSCSEEEEEECCCC
T ss_pred             hhhhcccCcEEEEEecccCCcccccccccccCcccccccccccccccchhcccccccccccccccCCcccceEEEecccc
Confidence            1 12234556899999999865332                                      12334466777776666


Q ss_pred             CccccccCCCCCCCCCCCccccchhhhhhhccccccccccccccHHHHHHHHHhhccC
Q 011066          246 ESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWMEDSDIHNLRTETLHQQYELVKTRTAS  303 (494)
Q Consensus       246 EsSya~yc~~~~~~~~~~~~tcLgD~fS~~wmedsd~~~l~~eTl~~qf~~vk~~t~~  303 (494)
                      ..||-.          +..+    -+|....++-... .-..++|.+.+..|.+++..
T Consensus       212 ~~a~~~----------~~~g----S~f~~~L~~~l~~-~~~~~~l~~il~~V~~~V~~  254 (277)
T d1nw9b_         212 FVSWRD----------PKSG----SWYVETLDDIFEQ-WAHSEDLQSLLLRVANAVSV  254 (277)
T ss_dssp             BSSTTC----------TTSC----BHHHHHHHHHHHH-HTTTSCHHHHHHHHHHHHHT
T ss_pred             eEEecC----------CCCC----CHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHH
Confidence            666532          1222    2444443332211 12345799999999998865

PyMOL of d1nw9b_

>d1m72a_ c.17.1.1 (A:) Caspase-1 {Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-1
species: Fall armyworm (Spodoptera frugiperda) [TaxId: 7108]

Probab=97.14  E-value=0.0012  Score=61.70  Aligned_cols=179  Identities=17%  Similarity=0.218  Sum_probs=108.7

Q ss_pred             EEEEEeccCCCCc---chhh--HHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccCCccccCC
Q 011066           61 WAVLLAGSNGFWN---YRHQ--ADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYT  135 (494)
Q Consensus        61 wAVlVagS~gw~N---YRHq--adv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np~pG~i~n~~~g~dvY~gv~iDY~  135 (494)
                      .|+||.=.++-.+   .|.-  .|+-.+-++|++.||.   +++..                                  
T Consensus        23 ~aLIInN~~f~~~~~~~r~g~~~Da~~l~~~l~~lGF~---V~~~~----------------------------------   65 (256)
T d1m72a_          23 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFK---VTVFP----------------------------------   65 (256)
T ss_dssp             EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCE---EEEEE----------------------------------
T ss_pred             EEEEEeCCccCCCCCCCCCChHHHHHHHHHHHHHCCCE---EEEEe----------------------------------
Confidence            9999997665332   3443  6899999999999995   33321                                  


Q ss_pred             CCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHH-HcCCCceEE
Q 011066          136 GEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKH-ASGNYKSLV  214 (494)
Q Consensus       136 g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~-~~~~Ykklv  214 (494)
                        ++|.+.+.++|.--..       + . -++.|-++|||.|||+.++|.=-|.. +..+++...+.... ..-+-|--+
T Consensus        66 --nlt~~~m~~~l~~~~~-------~-~-~~~~d~~vv~~~~HG~~~~i~~~D~~-~~~~~~~~~~~~~~~~~L~~KPKi  133 (256)
T d1m72a_          66 --NLKSEEINKFIQQTAE-------M-D-HSDADCLLVAVLTHGELGMLYAKDTH-YKPDNLWYYFTADKCPTLAGKPKL  133 (256)
T ss_dssp             --SCCHHHHHHHHHHHHT-------S-C-CTTEEEEEEEEESCEETTEEECSSSE-ECTTHHHHTTSTTTCGGGTTSCEE
T ss_pred             --CCCHHHHHHHHHHHhh-------h-h-ccCCCeEEEEEeccCcCCEEEecCCc-ccchHHhhhhhhhhhHHHcCCcEE
Confidence              5688888888762110       1 1 13457899999999999876444443 55555554442211 001112348


Q ss_pred             EEeccccccccccc----------------cCCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhhhhhccc
Q 011066          215 FYLEACESGSIFEG----------------LLPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSIAWME  278 (494)
Q Consensus       215 ~~iEAC~SGSmf~~----------------llp~~~nV~~iTASn~~EsSya~yc~~~~~~~~~~~~tcLgD~fS~~wme  278 (494)
                      |+++||...-+-.+                .+|...++++.-|+.++..||..              +.-|-+|.-.+.+
T Consensus       134 f~lqACRg~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~lia~st~~g~~a~~~--------------~~~gS~fi~~L~~  199 (256)
T d1m72a_         134 FFIQACQGDRLDGGITLSRTETDGSPSTSYRIPVHADFLIAFSTVPGYFSWRN--------------TTRGSWFMQALCE  199 (256)
T ss_dssp             EEEESCSSSBCBCCEEEEC---------CEEECTTCSEEEEESSCTTBCCEEE--------------TTTEEHHHHHHHH
T ss_pred             EEEecCcCCcccCCccccccccccccccccccCCCCCeeEEEecccceeeccC--------------CCCCCHHHHHHHH
Confidence            99999987543221                12444577777777777666643              1122345554444


Q ss_pred             cccccccccccHHHHHHHHHhhccC
Q 011066          279 DSDIHNLRTETLHQQYELVKTRTAS  303 (494)
Q Consensus       279 dsd~~~l~~eTl~~qf~~vk~~t~~  303 (494)
                      -... .-..+.|.+.+..|.+++..
T Consensus       200 ~l~~-~~~~~~l~~il~~V~~~V~~  223 (256)
T d1m72a_         200 ELRY-AGTERDILTLLTFVCQKVAL  223 (256)
T ss_dssp             HHHH-HTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHH-hCCCCCHHHHHHHHHHHHHH
Confidence            2221 22456799999999988853

PyMOL of d1m72a_

>d1f1ja_ c.17.1.1 (A:) Caspase-7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Caspase-like
superfamily: Caspase-like
family: Caspase catalytic domain
domain: Caspase-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0037  Score=57.70  Aligned_cols=181  Identities=14%  Similarity=0.188  Sum_probs=107.4

Q ss_pred             CeEEEEEeccCCCC----cchh--hHHHHHHHHHHHhCCCCCCCEEEEeccccccCCCCCCCCeEeeCCCCCCccCCccc
Q 011066           59 TRWAVLLAGSNGFW----NYRH--QADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPK  132 (494)
Q Consensus        59 ~~wAVlVagS~gw~----NYRH--qadv~~~Yq~L~~~Gi~denIIlmm~DDia~n~~Np~pG~i~n~~~g~dvY~gv~i  132 (494)
                      .-.|+||+=.++-.    +-|+  ..|+-.+=++|++.||.   +.+..                               
T Consensus        10 rG~aLII~n~~f~~~~~l~~r~g~~~Da~~l~~~l~~lGF~---V~~~~-------------------------------   55 (245)
T d1f1ja_          10 LGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFD---VIVYN-------------------------------   55 (245)
T ss_dssp             EEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEE---EEEEE-------------------------------
T ss_pred             CcEEEEEeCcCCCCcCCCCCCCChHHHHHHHHHHHHHCCCE---EEEec-------------------------------
Confidence            34899997766531    2465  47999999999999993   33322                               


Q ss_pred             cCCCCCCCHHHHHHHHcCCCCCCCCCCCccccCCCCCeEEEEeecCCCCCcccCCCCCCcCHHHHHHHHHHHHHc-CCCc
Q 011066          133 DYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHAS-GNYK  211 (494)
Q Consensus       133 DY~g~~Vt~~nfl~VL~G~~~~~~~~s~kvl~S~~~D~VFIY~tgHGg~g~l~fpd~~~L~a~dL~~~L~~m~~~-~~Yk  211 (494)
                           ++|.+.+.+.|..-..       + . -...|.++|||.|||..+.|.=.|. .+..+++...+....-. =+-|
T Consensus        56 -----nl~~~em~~~l~~~~~-------~-~-~~~~~~~vv~~~~HG~~~~i~g~d~-~~~v~~~~~~~~~~~~~~L~~k  120 (245)
T d1f1ja_          56 -----DCSCAKMQDLLKKASE-------E-D-HTNAACFACILLSHGEENVIYGKDG-VTPIKDLTAHFRGDRSKTLLEK  120 (245)
T ss_dssp             -----SCCHHHHHHHHHHHHH-------S-C-GGGEEEEEEEEESCEETTEEECSSS-EEEHHHHHHTTSTTTCGGGTTS
T ss_pred             -----CCCHHHHHHHHHHHHH-------H-h-ccCCceEEEEEeeccccceEecCCC-cEEcchhhhhccchhhHHHhhc
Confidence                 4677888888772110       1 1 1235889999999999886554454 36666666554331110 1122


Q ss_pred             eEEEEecccccccccccc-----------------CCCCCcEEEEeecCCCCccccccCCCCCCCCCCCccccchhhhhh
Q 011066          212 SLVFYLEACESGSIFEGL-----------------LPEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDLYSI  274 (494)
Q Consensus       212 klv~~iEAC~SGSmf~~l-----------------lp~~~nV~~iTASn~~EsSya~yc~~~~~~~~~~~~tcLgD~fS~  274 (494)
                      -.+|+++||.++.+-.++                 +|...++++.-|+.++-.||-.              +--|-+|.-
T Consensus       121 pKif~iqaCrg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~li~~st~~g~~a~~~--------------~~~gS~fi~  186 (245)
T d1f1ja_         121 PKLFFIQACRGTELDDGIQADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWRS--------------PGRGSWFVQ  186 (245)
T ss_dssp             CEEEEEESCCSSBCBCCBC---------------CBCTTTTEEEEESSCTTBCCEEE--------------TTTEEHHHH
T ss_pred             chhhehhhhcCcccccceeecCCCCCccccccccccCCCCCeEEEEecCCCceeccC--------------CCCCCHHHH
Confidence            347889999987653221                 2222345555555555544432              112335555


Q ss_pred             hccccccccccccccHHHHHHHHHhhccC
Q 011066          275 AWMEDSDIHNLRTETLHQQYELVKTRTAS  303 (494)
Q Consensus       275 ~wmedsd~~~l~~eTl~~qf~~vk~~t~~  303 (494)
                      .+++-... .-..+.|.+.+..|.+++..
T Consensus       187 ~L~~~l~~-~~~~~~l~~il~~V~~~V~~  214 (245)
T d1f1ja_         187 ALCSILEE-HGKDLEIMQILTRVNDRVAR  214 (245)
T ss_dssp             HHHHHHHH-HTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hCCCCCHHHHHHHHHHHHHH
Confidence            55443322 22456799999999988853

PyMOL of d1f1ja_