Citrus Sinensis ID: 011103

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
MAALSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ
ccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccccccEEEEEEccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEEcccccccEEEEEEcccccccccccccccccccEEEEcccEEEEEEcccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHcccEEEEcccccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
cccccccEEEEEcccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccEEEccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcEccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccc
maalstpifaisfknptlpkrapnsvpraMVKEVyfnhdgsatKKLQAGVDLVAELVGvtlgpkgrnvvlqnkygppkivndgetvlkeieledpleniGVKLVRQAgartndlagdgctTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRngvvtiekgkcteNSLEIVEgmrfdrgflspyfvtdrqkrtvefhdgklllvdkkiknpKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIkapafgerkshylddiAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITkdstlivtdgSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRAlsyptkliaknagpiq
maalstpifaisfknptlpkrapnSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGvtlgpkgrnvvlqnkygppkivndgeTVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGvvtiekgkctensLEIVEGMRFDRGFLSpyfvtdrqkrtvefhdgklllvdkkiknpkDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIkapafgerkshyldDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIkvvitkdstlivtdgstraavEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKralsyptkliaknagpiq
MAALSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ
********FAI*****************AMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLI********
****************************AMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTS***EDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAG***
MAALSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ
***LSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGP**
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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAALSTPIFAISFKNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSxxxxxxxxxxxxxxxxxxxxxIGAEIFKRALSYPTKLIAKNAGPIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query493 2.2.26 [Sep-21-2011]
Q9C667 611 Chaperonin 60 subunit bet yes no 0.947 0.764 0.786 0.0
P08927595 RuBisCO large subunit-bin N/A no 0.991 0.821 0.686 0.0
P21241588 RuBisCO large subunit-bin N/A no 0.959 0.804 0.675 0.0
Q9LJE4596 Chaperonin 60 subunit bet no no 0.931 0.770 0.688 0.0
P21240600 Chaperonin 60 subunit bet no no 0.955 0.785 0.671 0.0
C0Z361597 Chaperonin 60 subunit bet no no 0.931 0.768 0.679 0.0
Q43831499 RuBisCO large subunit-bin N/A no 0.839 0.829 0.690 1e-167
Q2JKV7539 60 kDa chaperonin 2 OS=Sy yes no 0.929 0.849 0.519 1e-135
Q2JXD4542 60 kDa chaperonin 1 OS=Sy yes no 0.929 0.845 0.515 1e-134
Q119S1561 60 kDa chaperonin 1 OS=Tr yes no 0.931 0.818 0.514 1e-131
>sp|Q9C667|CPNB4_ARATH Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana GN=CPN60B4 PE=1 SV=1 Back     alignment and function desciption
 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/469 (78%), Positives = 419/469 (89%), Gaps = 2/469 (0%)

Query: 23  PNSV--PRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIV 80
           PN V   RA  KEV+FN DGS TKKLQAG D+VA+L+GVTLGPKGRNVVLQNKYGPP+IV
Sbjct: 30  PNFVLRVRAAAKEVHFNRDGSVTKKLQAGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIV 89

Query: 81  NDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAG 140
           NDGETVLKEIELEDPLEN+GVKLVRQAGA+TNDLAGDG TTSIILA GLI EG+KVI+AG
Sbjct: 90  NDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAG 149

Query: 141 MNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISDALQQVGR 200
            NP+Q+ARGIEKT+KAL+ ELK  SRE+EDHELA VAAVSAGNDY VG MIS+A QQVGR
Sbjct: 150 TNPIQVARGIEKTTKALVLELKSMSREIEDHELAHVAAVSAGNDYEVGNMISNAFQQVGR 209

Query: 201 NGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPK 260
            GVVTIEKGK   N+LEIVEGM+F+RG+LSPYFVTDR+KR  EFHD KLLLVDKKI NPK
Sbjct: 210 TGVVTIEKGKYLVNNLEIVEGMQFNRGYLSPYFVTDRRKREAEFHDCKLLLVDKKITNPK 269

Query: 261 DMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDD 320
           DMFKILDSAVKE++P++IVAEDIEQ ALA +IRNKL+G LK AAIKAPAFGERKSH LDD
Sbjct: 270 DMFKILDSAVKEEFPVLIVAEDIEQDALAPVIRNKLKGNLKVAAIKAPAFGERKSHCLDD 329

Query: 321 IAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRS 380
           +AI TG  VIRDEMGL+L+KAGKEVLGTA +V++TKDSTLIVT+G T+ AV++R+S+I++
Sbjct: 330 LAIFTGATVIRDEMGLSLEKAGKEVLGTAKRVLVTKDSTLIVTNGFTQKAVDERVSQIKN 389

Query: 381 LAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGI 440
           L E TEE FQK ILNER+ARLSGGIAI+QVGA T VELKDKQL++EDALNATK+AIEEGI
Sbjct: 390 LIENTEENFQKKILNERVARLSGGIAIIQVGALTQVELKDKQLKVEDALNATKSAIEEGI 449

Query: 441 VVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNA 489
           VVGGGC+LLRL+ KV+ IKE LDN EQKIGAEIFK+ALSYP +LIAKNA
Sbjct: 450 VVGGGCALLRLATKVDRIKETLDNTEQKIGAEIFKKALSYPIRLIAKNA 498
Involved specifically in the folding of NDHH, a subunit of the chloroplast NADH dehydrogenase-like complex (NDH).
Arabidopsis thaliana (taxid: 3702)
>sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2 Back     alignment and function description
>sp|P21241|RUBB_BRANA RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q9LJE4|CPNB2_ARATH Chaperonin 60 subunit beta 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60B2 PE=1 SV=1 Back     alignment and function description
>sp|P21240|CPNB1_ARATH Chaperonin 60 subunit beta 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60B1 PE=1 SV=3 Back     alignment and function description
>sp|C0Z361|CPNB3_ARATH Chaperonin 60 subunit beta 3, chloroplastic OS=Arabidopsis thaliana GN=CPN60B3 PE=1 SV=1 Back     alignment and function description
>sp|Q43831|RUBB_SECCE RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1 Back     alignment and function description
>sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 Back     alignment and function description
>sp|Q2JXD4|CH601_SYNJA 60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1 Back     alignment and function description
>sp|Q119S1|CH601_TRIEI 60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query493
359473645 610 PREDICTED: chaperonin 60 subunit beta 4, 0.979 0.791 0.853 0.0
297738225584 unnamed protein product [Vitis vinifera] 0.935 0.789 0.876 0.0
255546981592 rubisco subunit binding-protein beta sub 0.983 0.819 0.826 0.0
449434702 597 PREDICTED: chaperonin 60 subunit beta 4, 0.993 0.820 0.755 0.0
356502680 646 PREDICTED: ruBisCO large subunit-binding 0.975 0.744 0.776 0.0
449478338 597 PREDICTED: LOW QUALITY PROTEIN: chaperon 0.993 0.820 0.753 0.0
15222666 611 TCP-1/cpn60 chaperonin-like protein [Ara 0.947 0.764 0.786 0.0
356495746575 PREDICTED: ruBisCO large subunit-binding 0.935 0.801 0.796 0.0
62320622 611 chaperonin precursor [Arabidopsis thalia 0.947 0.764 0.784 0.0
224111818475 predicted protein [Populus trichocarpa] 0.876 0.909 0.833 0.0
>gi|359473645|ref|XP_002269341.2| PREDICTED: chaperonin 60 subunit beta 4, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/486 (85%), Positives = 451/486 (92%), Gaps = 3/486 (0%)

Query: 8   IFAISFKNPTLPKRAPNSV---PRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPK 64
           + A+SF N TLP+R+ ++    PRAM KE+YFNHDGSATKKLQAGVD+VAELVGVTLGPK
Sbjct: 2   VSALSFSNLTLPRRSFSTTAWNPRAMAKELYFNHDGSATKKLQAGVDMVAELVGVTLGPK 61

Query: 65  GRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSII 124
           GRNVVLQNKYGPPKIVNDGETVLKEIELEDPLEN+GVKLVRQAGA+TN LAGDG TTS+I
Sbjct: 62  GRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNHLAGDGSTTSVI 121

Query: 125 LAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND 184
           LA+GLIAEGVKVIAAGMNP+QI+RGIEKT+ AL+SELKL SREVEDHELA VAAVSAGND
Sbjct: 122 LARGLIAEGVKVIAAGMNPIQISRGIEKTAMALVSELKLMSREVEDHELAHVAAVSAGND 181

Query: 185 YTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEF 244
           YTVG MISDA++QVGR GV+TIEKGKC ENSL+IVEGM+FDRG+LSPYFVTDRQK  VEF
Sbjct: 182 YTVGNMISDAIRQVGRRGVITIEKGKCAENSLQIVEGMQFDRGYLSPYFVTDRQKMMVEF 241

Query: 245 HDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAA 304
           HD KLLLVDKKI NPK+MFKILD+AVKEKYPIVIVAE IEQ+ALA +IRNKLRGVLKAAA
Sbjct: 242 HDCKLLLVDKKITNPKEMFKILDNAVKEKYPIVIVAEGIEQEALAPVIRNKLRGVLKAAA 301

Query: 305 IKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTD 364
           IKAPAFGERKSHYLDD+AILTGG VI DEMGLTL+KAGKEVLGTA KVVITKDSTLIVTD
Sbjct: 302 IKAPAFGERKSHYLDDLAILTGGTVISDEMGLTLEKAGKEVLGTATKVVITKDSTLIVTD 361

Query: 365 GSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLR 424
           GST+ AVEKR+S+IR L E TEE FQK ILNERIARLSGGIAILQVGAQT VELKDKQLR
Sbjct: 362 GSTQPAVEKRVSQIRGLVENTEENFQKKILNERIARLSGGIAILQVGAQTQVELKDKQLR 421

Query: 425 IEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKL 484
           IEDA+NATKAAIEEG+VVGGGCSLLRLS KV+GIKELLDNEEQKIGAEIFKRAL+YP +L
Sbjct: 422 IEDAVNATKAAIEEGVVVGGGCSLLRLSLKVDGIKELLDNEEQKIGAEIFKRALTYPARL 481

Query: 485 IAKNAG 490
           IAKNAG
Sbjct: 482 IAKNAG 487

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738225|emb|CBI27426.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546981|ref|XP_002514548.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] gi|223546152|gb|EEF47654.1| rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449434702|ref|XP_004135135.1| PREDICTED: chaperonin 60 subunit beta 4, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502680|ref|XP_003520145.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|449478338|ref|XP_004155289.1| PREDICTED: LOW QUALITY PROTEIN: chaperonin 60 subunit beta 4, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15222666|ref|NP_173947.1| TCP-1/cpn60 chaperonin-like protein [Arabidopsis thaliana] gi|75308802|sp|Q9C667.1|CPNB4_ARATH RecName: Full=Chaperonin 60 subunit beta 4, chloroplastic; Short=CPN-60 beta 4; Flags: Precursor gi|12321186|gb|AAG50688.1|AC079829_21 chaperonin precursor, putative [Arabidopsis thaliana] gi|332192542|gb|AEE30663.1| TCP-1/cpn60 chaperonin-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356495746|ref|XP_003516734.1| PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|62320622|dbj|BAD95277.1| chaperonin precursor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224111818|ref|XP_002315987.1| predicted protein [Populus trichocarpa] gi|222865027|gb|EEF02158.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query493
TAIR|locus:2028751 611 Cpn60beta4 "chaperonin-60beta4 0.989 0.798 0.764 2e-191
TAIR|locus:2092825596 Cpn60beta2 "chaperonin-60beta2 0.983 0.813 0.659 9.4e-169
TAIR|locus:2193839600 CPN60B "chaperonin 60 beta" [A 0.955 0.785 0.671 2e-168
UNIPROTKB|Q05972541 groL1 "60 kDa chaperonin 1" [S 0.929 0.846 0.491 3.8e-117
TIGR_CMR|SO_0704545 SO_0704 "chaperonin GroEL" [Sh 0.922 0.834 0.484 7.1e-116
TIGR_CMR|CBU_1718552 CBU_1718 "chaperonin, 60 kDa" 0.920 0.822 0.466 8.2e-115
UNIPROTKB|Q9KNR7544 groL1 "60 kDa chaperonin 1" [V 0.922 0.836 0.467 1.5e-113
TIGR_CMR|VC_2664544 VC_2664 "chaperonin, 60 Kd sub 0.922 0.836 0.467 1.5e-113
TIGR_CMR|CJE_1356545 CJE_1356 "co-chaperonin GroEL" 0.918 0.831 0.478 2.5e-113
UNIPROTKB|P0A6F5548 groL [Escherichia coli K-12 (t 0.922 0.830 0.460 5.3e-111
TAIR|locus:2028751 Cpn60beta4 "chaperonin-60beta4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1855 (658.1 bits), Expect = 2.0e-191, P = 2.0e-191
 Identities = 377/493 (76%), Positives = 431/493 (87%)

Query:     2 AALST-PIFAISF-KNPTLPKRA-PNSV--PRAMVKEVYFNHDGSATKKLQAGVDLVAEL 56
             AALS  P+   +F K P+    + PN V   RA  KEV+FN DGS TKKLQAG D+VA+L
Sbjct:     6 AALSALPLSDRTFRKKPSSSSSSSPNFVLRVRAAAKEVHFNRDGSVTKKLQAGADMVAKL 65

Query:    57 VGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAG 116
             +GVTLGPKGRNVVLQNKYGPP+IVNDGETVLKEIELEDPLEN+GVKLVRQAGA+TNDLAG
Sbjct:    66 LGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAG 125

Query:   117 DGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADV 176
             DG TTSIILA GLI EG+KVI+AG NP+Q+ARGIEKT+KAL+ ELK  SRE+EDHELA V
Sbjct:   126 DGSTTSIILAHGLITEGIKVISAGTNPIQVARGIEKTTKALVLELKSMSREIEDHELAHV 185

Query:   177 AAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTD 236
             AAVSAGNDY VG MIS+A QQVGR GVVTIEKGK   N+LEIVEGM+F+RG+LSPYFVTD
Sbjct:   186 AAVSAGNDYEVGNMISNAFQQVGRTGVVTIEKGKYLVNNLEIVEGMQFNRGYLSPYFVTD 245

Query:   237 RQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKL 296
             R+KR  EFHD KLLLVDKKI NPKDMFKILDSAVKE++P++IVAEDIEQ ALA +IRNKL
Sbjct:   246 RRKREAEFHDCKLLLVDKKITNPKDMFKILDSAVKEEFPVLIVAEDIEQDALAPVIRNKL 305

Query:   297 RGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITK 356
             +G LK AAIKAPAFGERKSH LDD+AI TG  VIRDEMGL+L+KAGKEVLGTA +V++TK
Sbjct:   306 KGNLKVAAIKAPAFGERKSHCLDDLAIFTGATVIRDEMGLSLEKAGKEVLGTAKRVLVTK 365

Query:   357 DSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVV 416
             DSTLIVT+G T+ AV++R+S+I++L E TEE FQK ILNER+ARLSGGIAI+QVGA T V
Sbjct:   366 DSTLIVTNGFTQKAVDERVSQIKNLIENTEENFQKKILNERVARLSGGIAIIQVGALTQV 425

Query:   417 ELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKR 476
             ELKDKQL++EDALNATK+AIEEGIVVGGGC+LLRL+ KV+ IKE LDN EQKIGAEIFK+
Sbjct:   426 ELKDKQLKVEDALNATKSAIEEGIVVGGGCALLRLATKVDRIKETLDNTEQKIGAEIFKK 485

Query:   477 ALSYPTKLIAKNA 489
             ALSYP +LIAKNA
Sbjct:   486 ALSYPIRLIAKNA 498
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006457 "protein folding" evidence=IMP
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA
GO:0016556 "mRNA modification" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:2092825 Cpn60beta2 "chaperonin-60beta2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2193839 CPN60B "chaperonin 60 beta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0704 SO_0704 "chaperonin GroEL" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1718 CBU_1718 "chaperonin, 60 kDa" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNR7 groL1 "60 kDa chaperonin 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2664 VC_2664 "chaperonin, 60 Kd subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1356 CJE_1356 "co-chaperonin GroEL" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6F5 groL [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2JKV7CH602_SYNJBNo assigned EC number0.51940.92900.8497yesno
Q8YVS8CH602_NOSS1No assigned EC number0.51620.92900.8178yesno
B0CFQ6CH601_ACAM1No assigned EC number0.50970.92900.8207yesno
Q9C667CPNB4_ARATHNo assigned EC number0.78670.94720.7643yesno
Q7WVY0CH602_ANASLNo assigned EC number0.50100.92900.8222N/Ano
Q0I885CH601_SYNS3No assigned EC number0.47280.92900.8282yesno
A3D8W9CH60_SHEB5No assigned EC number0.48260.92290.8348yesno
A2C7E2CH602_PROM3No assigned EC number0.47930.93100.8138yesno
Q119S1CH601_TRIEINo assigned EC number0.51400.93100.8181yesno
P12834CH601_SYNP6No assigned EC number0.49350.92900.8419yesno
Q0HZ97CH60_SHESRNo assigned EC number0.48470.92290.8348yesno
Q07WX7CH60_SHEFNNo assigned EC number0.47820.92290.8348yesno
P22879CH60_SYNE7No assigned EC number0.49350.92900.8419yesno
Q7MBB4CH602_GLOVINo assigned EC number0.50430.92900.8282yesno
A0L170CH60_SHESANo assigned EC number0.48470.92290.8348yesno
Q0HEQ4CH60_SHESMNo assigned EC number0.48470.92290.8348yesno
B1KIR6CH60_SHEWMNo assigned EC number0.48260.92290.8272yesno
Q3M6L5CH602_ANAVTNo assigned EC number0.51840.92900.8178yesno
A8FQY1CH60_SHESHNo assigned EC number0.48260.92290.8287yesno
Q2JXD4CH601_SYNJANo assigned EC number0.51510.92900.8450yesno
P0A338CH602_THEVLNo assigned EC number0.50100.92900.8434N/Ano
P0A337CH602_THEEBNo assigned EC number0.50100.92900.8434yesno
A6WJ17CH60_SHEB8No assigned EC number0.48260.92290.8348yesno
Q7V643CH601_PROMMNo assigned EC number0.47930.92900.8091yesno
P21241RUBB_BRANANo assigned EC number0.67570.95940.8044N/Ano
A3QA46CH60_SHELPNo assigned EC number0.48590.92080.8269yesno
A1RNN6CH60_SHESWNo assigned EC number0.48910.92290.8348yesno
Q43831RUBB_SECCENo assigned EC number0.69080.83970.8296N/Ano
P08927RUBB_PEANo assigned EC number0.68690.99180.8218N/Ano
B3ER92CH60_AMOA5No assigned EC number0.48260.92690.8400yesno
Q7NT31CH601_CHRVONo assigned EC number0.48690.92290.8457yesno
Q8CX48CH60_SHEONNo assigned EC number0.48470.92290.8348yesno
A4Y398CH60_SHEPCNo assigned EC number0.48910.92290.8348yesno
B8CID3CH60_SHEPWNo assigned EC number0.48910.92290.8272yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 0.0
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 0.0
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.0
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.0
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.0
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 1e-175
CHL00093529 CHL00093, groEL, chaperonin GroEL 1e-167
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 1e-165
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-163
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 1e-152
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-134
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-116
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 5e-86
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-81
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 7e-23
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 2e-16
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 2e-13
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 2e-12
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 7e-12
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 7e-10
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 8e-10
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 1e-09
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 2e-09
cd03343517 cd03343, cpn60, cpn60 chaperonin family 3e-09
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-08
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 2e-08
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 1e-07
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 3e-07
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 5e-07
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 9e-07
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 4e-06
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 5e-06
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 1e-05
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 5e-05
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information 
 Score =  687 bits (1773), Expect = 0.0
 Identities = 330/477 (69%), Positives = 407/477 (85%), Gaps = 2/477 (0%)

Query: 14  KNPTLPKRAPNSVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNK 73
           ++  L +     V  A  KE++FN DGSA KKLQAGV+ +A+LVGVTLGPKGRNVVL++K
Sbjct: 41  QSVRLRRSRSPKVKAA--KELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESK 98

Query: 74  YGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEG 133
           YG PKIVNDG TV KE+ELEDP+ENIG KLVRQA A+TNDLAGDG TTS++LAQGLIAEG
Sbjct: 99  YGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEG 158

Query: 134 VKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGNDYTVGKMISD 193
           VKV+AAG NPVQI RGIEKT+KAL+ ELK  S+EVED ELADVAAVSAGN+Y VG MI++
Sbjct: 159 VKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAE 218

Query: 194 ALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVD 253
           A+ +VGR GVVT+E+GK  EN+L +VEGM+FDRG++SPYFVTD +K +VE+ + KLLLVD
Sbjct: 219 AMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVD 278

Query: 254 KKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGER 313
           KKI N +D+  IL+ A++  YP++I+AEDIEQ+ALA L+ NKLRG LK AA+KAP FGER
Sbjct: 279 KKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGER 338

Query: 314 KSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEK 373
           KS YLDDIAILTGG VIR+E+GL+LDK GKEVLGTA KVV+TKD+T IV DGST+ AV K
Sbjct: 339 KSQYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNK 398

Query: 374 RISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATK 433
           R+++I++L E  E+ ++K  LNERIA+LSGG+A++QVGAQT  ELK+K+LR+EDALNATK
Sbjct: 399 RVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATK 458

Query: 434 AAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAG 490
           AA+EEGIVVGGGC+LLRL++KV+ IK+ L+N+EQK+GA+I KRALSYP KLIAKNAG
Sbjct: 459 AAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAG 515

Length = 600
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 493
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.96
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.95
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.19
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 97.42
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-100  Score=827.69  Aligned_cols=469  Identities=70%  Similarity=1.041  Sum_probs=453.3

Q ss_pred             CccccccceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHH
Q 011103           25 SVPRAMVKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLV  104 (493)
Q Consensus        25 ~~~~~~~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll  104 (493)
                      ...+.++|+|.||.+.++|+.+++||+.|+++|++||||+||||||++++|+++|||||+||+|+|+++||++|+||+|+
T Consensus        50 ~~~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll  129 (600)
T PLN03167         50 SPKVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLV  129 (600)
T ss_pred             CchhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHH
Confidence            45556799999994227999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChHHHHHHHHHhcCCc
Q 011103          105 RQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDHELADVAAVSAGND  184 (493)
Q Consensus       105 ~~~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~L~~va~ts~~~~  184 (493)
                      +++|++||+++||||||+++||++||+++.++++.|+||..|++||+.|.+.+++.|++++.|+++.+|.++|++|++++
T Consensus       130 ~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~  209 (600)
T PLN03167        130 RQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNN  209 (600)
T ss_pred             HHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999997668999999999999


Q ss_pred             hhHhHHHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHH
Q 011103          185 YTVGKMISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFK  264 (493)
Q Consensus       185 ~~l~~li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~  264 (493)
                      +.|++++++|+.+++++|.|.+++|++++|++++++|++|+++|.||||++++++|+++++||+|+++|++|++++++.+
T Consensus       210 ~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~  289 (600)
T PLN03167        210 YEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIG  289 (600)
T ss_pred             HHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHH
Confidence            99999999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCC
Q 011103          265 ILDSAVKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKE  344 (493)
Q Consensus       265 ~le~i~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~  344 (493)
                      +++.+.+.|+|+||++++|+++++++|+.|+++|.++|+|||+|+||+.++++|+|||++|||++++++.++++++++++
T Consensus       290 ~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~  369 (600)
T PLN03167        290 ILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKE  369 (600)
T ss_pred             HHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888889999999


Q ss_pred             cccceeEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHH
Q 011103          345 VLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLR  424 (493)
Q Consensus       345 ~lG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~  424 (493)
                      +||+|++|++.++.++++++.++++.+++|+.+++.+++++.++|++++|++|+++|++++++|+|||+|+.+++|++|+
T Consensus       370 ~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~  449 (600)
T PLN03167        370 VLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLR  449 (600)
T ss_pred             HCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHH
Confidence            99999999999999999999899999999999999999999999999999999999999999888999999999999999


Q ss_pred             HHHHHHHHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103          425 IEDALNATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ  493 (493)
Q Consensus       425 ~~dAl~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~  493 (493)
                      ++||++++|+|+++|+|||||++|+++|.+|++++...++.+|++|++++++||+.||++||+|||+|+
T Consensus       450 i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~  518 (600)
T PLN03167        450 VEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNG  518 (600)
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCH
Confidence            999999999999999999999999999999999887788999998999999999999999999999985

>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-118
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-117
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 1e-117
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-117
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-117
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-116
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-116
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-116
1ss8_A524 Groel Length = 524 1e-116
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-116
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 1e-116
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 1e-116
1oel_A547 Conformational Variability In The Refined Structure 1e-116
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-115
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-115
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 1e-115
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-109
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 4e-98
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 4e-45
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 7e-44
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 2e-43
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 2e-43
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 4e-43
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 4e-37
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 1e-36
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 4e-36
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 3e-32
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-12
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-11
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-11
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-09
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-09
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 2e-09
1a6d_B543 Thermosome From T. Acidophilum Length = 543 6e-09
1a6d_A545 Thermosome From T. Acidophilum Length = 545 7e-09
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 1e-08
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 2e-08
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-08
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 3e-08
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 4e-08
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 5e-08
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-08
3izh_A513 Mm-Cpn D386a With Atp Length = 513 9e-08
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 1e-07
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 1e-07
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 1e-07
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-07
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-07
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-06
3p9d_C 590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-06
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-06
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-06
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-05
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-05
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure 
Iteration: 1

 Score =  422 bits (1085), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/460 (46%), Positives = 320/460 (69%), Gaps = 5/460 (1%)
Query: 32  KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
           KEV FN D  A  ++  GV+++A+ V VTLGPKGRNVV+   +G P+I  DG +V KEIE
Sbjct: 4   KEVKFNSD--ARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIE 61
Query: 92  LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
           L D  EN+G ++VR+  +RTND AGDG TT+ +LAQ ++ EG+K +AAGMNP+ + RGI+
Sbjct: 62  LSDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGID 121
Query: 152 KTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
             +  ++  +K  +R V D  E+A V  +SA  +  +G+ I++A+Q+VG  GV+T+E+ K
Sbjct: 122 VATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENK 181
Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
             E  +E+VEGM+FDRG+LSPYFVT+  K   E  D  +LL +KK+ + + M  +L+S +
Sbjct: 182 GMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVI 241
Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
           + + P++IVAED+E +ALA L+ NKLRG LK AA+KAP FG+R+   L DIAILTGG VI
Sbjct: 242 QSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVI 301
Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390
            +++G+ L+    ++LG A KV I KD+T IV     +A +E R+S+IR   E T   + 
Sbjct: 302 SEDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYD 361
Query: 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLR 450
           +  L ER+A+L+GG+A+++VG  T +E+K+++ R++DALNAT+AA++EGIVVGGG +L++
Sbjct: 362 REKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQ 421
Query: 451 LSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAG 490
            +  +EG+     N +Q  G  I +RAL  P + IA+NAG
Sbjct: 422 GAKVLEGLSGA--NSDQDAGIAIIRRALEAPMRQIAENAG 459
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 0.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 0.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 0.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 0.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 2e-72
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 2e-71
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 4e-56
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 3e-16
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 3e-16
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 7e-16
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 2e-15
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 3e-15
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 8e-15
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 8e-15
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-14
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 3e-14
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 3e-14
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 4e-14
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 4e-14
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 5e-14
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 6e-14
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-13
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 2e-13
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 2e-13
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 3e-13
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 5e-13
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-12
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 5e-11
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 9e-10
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
 Score =  556 bits (1434), Expect = 0.0
 Identities = 210/460 (45%), Positives = 316/460 (68%), Gaps = 5/460 (1%)

Query: 32  KEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIE 91
           K+V F +D  A  K+  GV+++A+ V VTLGPKGRNVVL   +G P I  DG +V +EIE
Sbjct: 3   KDVKFGND--AGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIE 60

Query: 92  LEDPLENIGVKLVRQAGARTNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIE 151
           LED  EN+G ++V++  ++ ND AGDG TT+ +LAQ +I EG+K +AAGMNP+ + RGI+
Sbjct: 61  LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120

Query: 152 KTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGKMISDALQQVGRNGVVTIEKGK 210
           K     + ELK  S    D   +A V  +SA +D TVGK+I++A+ +VG+ GV+T+E G 
Sbjct: 121 KAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180

Query: 211 CTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAV 270
             ++ L++VEGM+FDRG+LSPYF+   +   VE     +LL DKKI N ++M  +L++  
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240

Query: 271 KEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVI 330
           K   P++I+AED+E +ALA L+ N +RG++K AA+KAP FG+R+   L DIA LTGG VI
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300

Query: 331 RDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQ 390
            +E+G+ L+KA  E LG A +VVI KD+T I+      AA++ R+++IR   E     + 
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360

Query: 391 KNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDALNATKAAIEEGIVVGGGCSLLR 450
           +  L ER+A+L+GG+A+++VGA T VE+K+K+ R+EDAL+AT+AA+EEG+V GGG +L+R
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420

Query: 451 LSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAG 490
           +++K+  ++    N +Q +G ++  RA+  P + I  N G
Sbjct: 421 VASKLADLRG--QNADQNVGIKVALRAMEAPLRQIVLNCG 458
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query493
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.88
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.8
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
Probab=100.00  E-value=5e-108  Score=878.65  Aligned_cols=459  Identities=45%  Similarity=0.777  Sum_probs=448.3

Q ss_pred             cceeccCCcHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCcEEecChHHHhccccccCcccchHHHHHHHHHhh
Q 011103           31 VKEVYFNHDGSATKKLQAGVDLVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKEIELEDPLENIGVKLVRQAGAR  110 (493)
Q Consensus        31 ~~~i~~g~~~~~~~~~~~~~~~la~~v~stlGP~G~~kmI~~~~g~~~iTnDG~tIl~~i~~~~p~~~~gakll~~~a~~  110 (493)
                      +|+|.||  .++|..|+.||..|+++|++||||+||||||++++|+|+|||||+||+|+|+++||+||+||+|++++|++
T Consensus         2 ~k~~~~g--~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~   79 (547)
T 1kp8_A            2 AKDVKFG--NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASK   79 (547)
T ss_dssp             CEEEEEH--HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHH
T ss_pred             Ccccccc--HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHh
Confidence            6999999  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCcchHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCcccChH-HHHHHHHHhcCCchhHhH
Q 011103          111 TNDLAGDGCTTSIILAQGLIAEGVKVIAAGMNPVQIARGIEKTSKALLSELKLTSREVEDH-ELADVAAVSAGNDYTVGK  189 (493)
Q Consensus       111 ~d~~~GDGTTt~vvLa~~Ll~~~~~li~~Gi~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~-~L~~va~ts~~~~~~l~~  189 (493)
                      ||+++||||||+|+||++||+++.+++++|+||+.|++||++|.+.++++|+++++|+++. .|.++|++|++++++|++
T Consensus        80 qd~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~~  159 (547)
T 1kp8_A           80 ANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGK  159 (547)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHHH
T ss_pred             hccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999876 899999999999999999


Q ss_pred             HHHHHHHhhccCCceEeecCCCcccceeeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHHHHHH
Q 011103          190 MISDALQQVGRNGVVTIEKGKCTENSLEIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSA  269 (493)
Q Consensus       190 li~~Ai~~v~~~g~I~v~~G~~~~ds~~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~le~i  269 (493)
                      +++||+.+++++|.|++++|++++||+++++|++|+++|.||||++++++|+++++||+|+++|++|+++++++++++++
T Consensus       160 liadAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~i  239 (547)
T 1kp8_A          160 LIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAV  239 (547)
T ss_dssp             HHHHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHHH
T ss_pred             HHHHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCEEEEecCchHHHHHHHHHhhccccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCcccce
Q 011103          270 VKEKYPIVIVAEDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTA  349 (493)
Q Consensus       270 ~~~g~~lvii~~~i~~~al~~L~~n~~~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~  349 (493)
                      .+.|+||||++++|+++++++|+.|+++|.++|+|||+|+|+++++.+|+|||++|||++++++.|++++++++++||+|
T Consensus       240 ~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a  319 (547)
T 1kp8_A          240 AKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQA  319 (547)
T ss_dssp             HGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEE
T ss_pred             HhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999988989999999999999


Q ss_pred             eEEEEecCeEEEEecCCChhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhcCCeEEEEeccCChhhHHHHHHHHHHHH
Q 011103          350 IKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIARLSGGIAILQVGAQTVVELKDKQLRIEDAL  429 (493)
Q Consensus       350 ~~v~i~~~~~~~~~g~~~~~~i~~~~~~l~~~~~~~~~~~~~~~l~~rl~~l~~~~~tI~l~G~t~~~l~E~~~~~~dAl  429 (493)
                      +.|++++++|+||+||++++.+++|+++|+.+++.++++|+|++|+||+++|+++++||+|||+|+.+++|+||+++|||
T Consensus       320 ~~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl  399 (547)
T 1kp8_A          320 KRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDAL  399 (547)
T ss_dssp             EEEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCccccCchhhhHHHHHHHhHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011103          430 NATKAAIEEGIVVGGGCSLLRLSAKVEGIKELLDNEEQKIGAEIFKRALSYPTKLIAKNAGPIQ  493 (493)
Q Consensus       430 ~a~~~al~~gvvpGGG~~e~~ls~~L~~~~~~~~~~~q~~~~~~~a~AL~~i~~~L~~NaG~~~  493 (493)
                      |++|+++++|+|||||++|++++.+|++++. .++.+| +++++|++||+.||++||+|||+++
T Consensus       400 ~~~r~av~~giVpGGGa~e~~~s~~L~~~~~-~~g~~q-~~i~~~a~ALe~ip~~la~NaG~d~  461 (547)
T 1kp8_A          400 HATRAAVEEGVVAGGGVALIRVASKLADLRG-QNADQN-VGIKVALRAMEAPLRQIVLNCGEEP  461 (547)
T ss_dssp             HHHHHHHHHCEEETTTHHHHHHHHHTTTCCC-SSHHHH-HHHHHHHHHTTHHHHHHHHHHTSCH
T ss_pred             HHHHHhccCCEEeCCcHHHHHHHHHHHHHhc-cCchHH-HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            9999999999999999999999999998875 556555 6999999999999999999999974
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 493
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 4e-65
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 8e-65
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 5e-64
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 7e-55
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 1e-44
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 2e-07
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 5e-37
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 4e-05
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 7e-36
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-08
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 4e-29
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 8e-23
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 3e-06
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-21
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 2e-20
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 5e-04
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 2e-17
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 7e-16
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 1e-04
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 2e-12
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 2e-09
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 2e-11
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 2e-09
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score =  206 bits (526), Expect = 4e-65
 Identities = 81/184 (44%), Positives = 122/184 (66%)

Query: 221 GMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVA 280
           GMRFD+G++S YFVTD +++     D  +LLV  K+   KD+  +L+  +    P++I+A
Sbjct: 1   GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60

Query: 281 EDIEQQALALLIRNKLRGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDK 340
           ED+E +AL+ L+ NK+RG  K+ A+KAP FG+R+   L D+AILTGG VI +E+GLTL+ 
Sbjct: 61  EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 120

Query: 341 AGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRISEIRSLAEITEERFQKNILNERIAR 400
           A   +LG A KVV+TKD T IV       A+  R+++IR   E ++  + +  L ER+A+
Sbjct: 121 ADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAK 180

Query: 401 LSGG 404
           L+GG
Sbjct: 181 LAGG 184
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query493
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.98
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.97
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.82
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.78
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.78
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.78
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.54
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.44
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.2
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.13
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 99.07
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.02
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 98.82
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.44
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.39
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 98.34
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 98.34
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.31
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 98.25
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 97.44
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 96.84
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-41  Score=313.12  Aligned_cols=189  Identities=45%  Similarity=0.764  Sum_probs=185.4

Q ss_pred             eeeeceEEecccCCCccccCcCCceeEecceeEEEecccCCCHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHhhc
Q 011103          217 EIVEGMRFDRGFLSPYFVTDRQKRTVEFHDGKLLLVDKKIKNPKDMFKILDSAVKEKYPIVIVAEDIEQQALALLIRNKL  296 (493)
Q Consensus       217 ~~i~G~~~~~~~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~el~~~le~i~~~g~~lvii~~~i~~~al~~L~~n~~  296 (493)
                      ++.+||.|++||.||||+++++++.++++||+||++|.+|+++++++|+||.+.+.+.||||++++|+++||++|+.|+.
T Consensus         5 ~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~~   84 (193)
T d1kida_           5 RGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTM   84 (193)
T ss_dssp             SCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHHH
T ss_pred             cccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhhh
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeeeecCcccccccchHHHHHHHhCCeeeecccCccccCCCCCcccceeEEEEecCeEEEEecCCChhhHHHHHH
Q 011103          297 RGVLKAAAIKAPAFGERKSHYLDDIAILTGGLVIRDEMGLTLDKAGKEVLGTAIKVVITKDSTLIVTDGSTRAAVEKRIS  376 (493)
Q Consensus       297 ~g~~~i~aV~~~~~~~~~~~~l~~ia~~tG~~ii~~~~~~~~~~~~~~~lG~~~~v~i~~~~~~~~~g~~~~~~i~~~~~  376 (493)
                      +|.++|+|||+|+||+.+++.|+|||.+|||++++++.|.++++++.++||+|+++++++++|+++++.+++++|++|++
T Consensus        85 kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri~  164 (193)
T d1kida_          85 RGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVA  164 (193)
T ss_dssp             TTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHHH
T ss_pred             ccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhhcCCe
Q 011103          377 EIRSLAEITEERFQKNILNERIARLSGGI  405 (493)
Q Consensus       377 ~l~~~~~~~~~~~~~~~l~~rl~~l~~~~  405 (493)
                      +|+.+++.++++|++++|++||++|+|++
T Consensus       165 ~Lk~~l~~~~~~~~~e~L~eRlakLsGGV  193 (193)
T d1kida_         165 QIRQQIEEATSDYDREKLQERVAKLAGGV  193 (193)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999875
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure