Citrus Sinensis ID: 011112

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
Protein Sequence
MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKGATGVPA
Secondary Structure (PSIPRED)
cccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccEEccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcEEEEEEEcccccccccHHHEEHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHEHEHHHHHHHHHHHHHHHHHcccccccHHHHHccccccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHEEEEHccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHEEcccccccccc
Coil and Loop (DISEMBL)
MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLkdklkfspsasqfvsavaffpwsikplygilsdcipikgrkripYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSllggyaltniEIDRIFLLFTVLPAIQLLscglvkenrVSTKVLKEFsssngyhqvngnesilddedgfseeKYNISTKKRKKNKKNQKKRMFKIRKsqipeknnplVIQWFHSLKAAIYSLYSafrqpeilrPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMnltvgisdktMVLYGSALVDAvnqfkfmpflilsgqlcppgieGTLFALFMSISNFGSTVGSFFGAGLASslsissgsfdnlLLGISIQALCTFIPIAFlflipkgatgvpa
Flexible Loop (DISEMBL)
MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEfsssngyhqvngnesilddedgfseekynistkkrkknkknqkkrmfkirksqipeknnpLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPkgatgvpa
Low Complexity Region (SEG)
MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSamadvvvdamiaeaakseraafaGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEkynistkkrkknkknqkkrmfkirkSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYlkrlklrrilllTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFgaglasslsissgsFDNLLLGISIQALCTFIPIAFLFLIPKGATGVPA
Disordered region (IsUnstruct)
****KNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLK***********************************************************NPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPK*******
Disordered Region (DISOPRED)
*******FGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKS****FAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLI**GA*****
Disordered Region (DISEMBL)
MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNI****************FKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKGATGVPA
Disordered Region (DISPRO)
MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVST*****************************************KNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKG******
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKGATGVPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	493	2.2.26 [Sep-21-2011]
Q8RWQ5	491	Probable folate-biopterin	yes	no	0.971	0.975	0.646	0.0
Q9SKZ5	560	Folate-biopterin transpor	no	no	0.791	0.696	0.321	5e-52
Q55721	494	Folate-biopterin transpor	N/A	no	0.787	0.785	0.305	7e-43
F4KIL8	492	Probable folate-biopterin	no	no	0.797	0.798	0.272	1e-35
Q9LEV7	503	Probable folate-biopterin	no	no	0.811	0.795	0.256	9e-34
F4I5Q2	542	Probable folate-biopterin	no	no	0.425	0.387	0.378	2e-33
Q9XIQ7	442	Probable folate-biopterin	no	no	0.432	0.481	0.321	2e-30
O22780	538	Probable folate-biopterin	no	no	0.385	0.353	0.350	3e-29
Q9SQN2	497	Probable folate-biopterin	no	no	0.425	0.422	0.334	3e-26
Q5FV41	499	Probable folate-biopterin	no	no	0.415	0.410	0.298	2e-23

>sp|Q8RWQ5|FBT4_ARATH Probable folate-biopterin transporter 4 OS=Arabidopsis thaliana GN=At5g54860 PE=2 SV=1

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/500 (64%), Positives = 398/500 (79%), Gaps = 21/500 (4%)

Query: 1   MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS 60
           +KQL++ FGV+FLWL+CLIYFTQGFRSFVWTAVSYQLKD+L+ SPSASQFV +VAFFPWS
Sbjct: 5   LKQLRSAFGVAFLWLVCLIYFTQGFRSFVWTAVSYQLKDRLQLSPSASQFVFSVAFFPWS 64

Query: 61  IKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLG 120
           IKPLYGI+SDCIPI G+KR PYLVISTVLSLVPWL+LGL++  RSS+ +L++ LT QNLG
Sbjct: 65  IKPLYGIISDCIPIGGKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLTVQNLG 124

Query: 121 SAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFL 180
           SAMADVV+DAMIAEA + E+A+FAGDLQS+SW AMA GG+CGSLLGGYAL+N++I+ IFL
Sbjct: 125 SAMADVVIDAMIAEAVRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKIETIFL 184

Query: 181 LFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIST 240
           LFTVLPA+QLLSC LV+E+  + + L E   SN + +    +S+  +++     K N   
Sbjct: 185 LFTVLPALQLLSCALVEESPANNEPLPELLDSNEFEE----KSLTSNDNYPDTSKSNTRR 240

Query: 241 KKR-------KKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEI 293
           +K          N K++ ++          +++  L  QWF SLKAA + L  AF+QP I
Sbjct: 241 RKGQKKGKKGDSNGKSETQK----------KQSKSLASQWFQSLKAATFGLGRAFKQPII 290

Query: 294 LRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKR 353
           LRPMAWFF+AH+ VPNLSTVMFYYQTE+L L+A+FLGTARVVGW+GLM GT+ YN YL+ 
Sbjct: 291 LRPMAWFFIAHITVPNLSTVMFYYQTEVLQLDAAFLGTARVVGWLGLMFGTFIYNRYLQD 350

Query: 354 LKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLI 413
           + LR+ LL   +GLS+   LD+VLVSR N+  G+SDKTMVL+GSAL DA+NQ KFMPFLI
Sbjct: 351 MTLRKSLLFAHIGLSVTILLDMVLVSRANVGYGVSDKTMVLFGSALGDAINQLKFMPFLI 410

Query: 414 LSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALC 473
           LSG+LCPPGIEGTLFALFMSI+N G+TVGSF GAGLAS L ISSGSFDN+ +G++IQ  C
Sbjct: 411 LSGRLCPPGIEGTLFALFMSINNLGNTVGSFMGAGLASLLGISSGSFDNMFMGLAIQVFC 470

Query: 474 TFIPIAFLFLIPKGATGVPA 493
           T+IP+ FLFLIPK ATGV A
Sbjct: 471 TYIPVLFLFLIPKEATGVSA 490

Could mediate folate transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKZ5|FBT1_ARATH Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana GN=At2g32040 PE=2 SV=2

 Score =  205 bits (522), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 144/448 (32%), Positives = 216/448 (48%), Gaps = 58/448 (12%)

Query: 16  ICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIK 75
           + ++YF QG       AVS+ LKD L   P+ +  ++ ++  PW +KPLYG +SD +P+ 
Sbjct: 130 VAMVYFVQGVLGLARLAVSFYLKDDLHLDPAETAVITGLSSLPWLVKPLYGFISDSVPLF 189

Query: 76  GRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEA 135
           G +R  YLV+S +L    W ++   A F  S +     +   +L  A +DVVVD+M+ E 
Sbjct: 190 GYRRRSYLVLSGLLGAFSWSLM---AGFVDSKYSAAFCILLGSLSVAFSDVVVDSMVVER 246

Query: 136 AKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGL 195
           A+ E  + +G LQSL W + AFGGI  S   G  + +  +  +F +  +LP I      L
Sbjct: 247 ARGESQSVSGSLQSLCWGSSAFGGIVSSYFSGSLVESYGVRFVFGVTALLPLITSAVAVL 306

Query: 196 VKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMF 255
           V E RV                              S +K NI+                
Sbjct: 307 VNEQRVVRPA--------------------------SGQKENITL--------------- 325

Query: 256 KIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMF 315
                        L   +  + K  +  L+ A +QP +  P  + FL   A P+  + MF
Sbjct: 326 -------------LSPGFLQTSKQNMIQLWGAIKQPNVFLPTLFIFLWQ-ATPHSDSAMF 371

Query: 316 YYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDI 375
           Y+ T  L     FLG  ++V  +  +LG   YNG+LK + LR+I L+T +  + L    +
Sbjct: 372 YFTTNKLGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPLRKIFLVTTIFGTGLGMTQV 431

Query: 376 VLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSIS 435
           +LVS  N  +GISD+   +  S ++  + Q  FMP L+L+ +LCP G+E TLFA  MSIS
Sbjct: 432 ILVSGFNRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAARLCPEGMEATLFATLMSIS 491

Query: 436 NFGSTVGSFFGAGLASSLSISSGSFDNL 463
           N GS +G   GAGL  +  I+  SF NL
Sbjct: 492 NGGSVLGGLMGAGLTQAFGITRDSFGNL 519

Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55721|FBT_SYNY3 Folate-biopterin transporter OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0642 PE=1 SV=1

 Score =  175 bits (444), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 140/459 (30%), Positives = 207/459 (45%), Gaps = 71/459 (15%)

Query: 16  ICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIK 75
           I  IYF QG       AVS+ LKD+L  SP+A   +  +   PW +KP+ G++SD +P+ 
Sbjct: 39  ILSIYFVQGVLGLSRLAVSFFLKDELGLSPAAMGALIGLGAAPWILKPVLGLMSDTVPLF 98

Query: 76  GRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEA 135
           G +R  YL +S ++    WL+    A+  S T   +VLL   +L  A+ DV+VD+++ E 
Sbjct: 99  GYRRRSYLWLSGLMGSAGWLLFA--AWVSSGTQAGLVLLFT-SLSVAIGDVIVDSLVVER 155

Query: 136 AKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGL 195
           A+ E  A  G LQSL+W A A GGI  +   G  L       +F +  + P + + +  L
Sbjct: 156 AQRESLAQVGSLQSLTWGAAAVGGIITAYASGALLEWFSTRTVFAITAIFPLLTVGAAFL 215

Query: 196 VKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMF 255
           + E  VST                                        ++ +K Q K   
Sbjct: 216 ISE--VSTA---------------------------------------EEEEKPQPKAQI 234

Query: 256 KIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMF 315
           K+                          ++ A RQ  IL P  + F    A P+  +  F
Sbjct: 235 KL--------------------------VWQAVRQKTILLPTLFIFFWQ-ATPSAESAFF 267

Query: 316 YYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDI 375
           Y+ T  L  E  FLG  R+V  V  ++G   Y  +LK L  R I+  + V  S+L    +
Sbjct: 268 YFTTNELGFEPKFLGRVRLVTSVAGLIGVGLYQRFLKTLPFRVIMGWSTVISSLLGLTTL 327

Query: 376 VLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSIS 435
           +L++  N  +GI D    L  S ++    Q  FMP L+L+ +LCPPGIE TLFAL MS+ 
Sbjct: 328 ILITHANRAMGIDDHWFSLGDSIILTVTGQIAFMPVLVLAARLCPPGIEATLFALLMSVM 387

Query: 436 NFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCT 474
           N    +    G+ L   L ++   FDNL L + I  L T
Sbjct: 388 NLAGVLSFEVGSLLTHWLGVTETQFDNLALLVIITNLST 426

Mediates folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|F4KIL8|FBT5_ARATH Probable folate-biopterin transporter 5 OS=Arabidopsis thaliana GN=At5g25040 PE=2 SV=2

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 129/474 (27%), Positives = 206/474 (43%), Gaps = 81/474 (17%)

Query: 22  TQGF-RSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKR 79
            QGF  S    A  Y +KD  K  PS  Q +SA+    W I KPL+GIL+D +PI G  R
Sbjct: 56  NQGFGYSLGHVATDYYMKDVQKVQPSQYQALSAITRISWIIFKPLFGILTDVLPIFGFHR 115

Query: 80  IPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLL---TAQNLGSAMADVVVDAMIAEAA 136
            PY +++ V+ +V  L + L      S  HL + L   T  +   A+ADV +DA     +
Sbjct: 116 RPYFILAGVIGVVSLLFISLQ-----SNLHLYLALFWMTISSAAMAIADVTIDACTTYNS 170

Query: 137 KSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLV 196
            ++  + A D+QSL  L+ + G + G  + G  +  +    +F L T   A+  +   L 
Sbjct: 171 -NKHPSLASDMQSLCSLSYSIGELLGFFMSGILVHLVGSKGVFGLLTFTFALVSVVGVLF 229

Query: 197 KENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFK 256
            E RV                            GFS           K+N  N  K M++
Sbjct: 230 SEPRV---------------------------HGFS----------FKQNFTNAMKAMWR 252

Query: 257 IRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFY 316
             K                                ++ +P  + F+      ++   +FY
Sbjct: 253 TIKCS------------------------------DVWQPSLYMFITRALGLDIKEGLFY 282

Query: 317 YQTEILN---LEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFL 373
           + T+  +        +G    +G +G +LG   YN  LK    R++ L TQ+  ++    
Sbjct: 283 WFTDSKDGPLFAQETVGFILSIGSIGSILGVLLYNLRLKDHPFRKLFLWTQLLFALSGMF 342

Query: 374 DIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMS 433
           D++LV R+NL  G+ D   ++    +   + +  +M   +L+ +LCP GIEGT FAL MS
Sbjct: 343 DLILVLRLNLKFGLPDYLFIVVDGIVSKMIIRLTWMVIFVLNTKLCPHGIEGTFFALLMS 402

Query: 434 ISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKG 487
           I N G    S+ G  +   L ++   F NL L + ++ +   +PI FLFL+P+G
Sbjct: 403 IDNAGLMTSSWLGGKMLHVLKVTRTEFGNLWLAVLVRNVMRLLPICFLFLVPQG 456

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LEV7|FBT6_ARATH Probable folate-biopterin transporter 6 OS=Arabidopsis thaliana GN=At5g10820 PE=2 SV=1

 Score =  145 bits (365), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 197/468 (42%), Gaps = 68/468 (14%)

Query: 23  QGFRSFVWTAVS-YQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIP 81
           QGF   ++  V+ Y  KD  +  PS  Q    + + PW ++P++G+ +D  PIKG KR P
Sbjct: 69  QGFSGSIFKVVTDYYWKDVQQVQPSVVQLYMGLYYIPWVMRPIWGLFTDVFPIKGYKRKP 128

Query: 82  YLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERA 141
           Y V+S VL LV    + +    +      +  L   +   A+ADVV+DA IA  + + R+
Sbjct: 129 YFVVSGVLGLVS--AIAIVVLGKLPAALALSCLLGVSAAMAIADVVIDACIATNSINIRS 186

Query: 142 AFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRV 201
             A D+QSL  +  + G + G    G  +  +       +    PA  ++    + E R 
Sbjct: 187 -LAPDIQSLCMVCSSAGALVGYATSGVFVHQLGPQGALGVLAFSPATIVILGFFIYEKRS 245

Query: 202 STKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQ 261
           ST                                  + T+K KK+               
Sbjct: 246 ST----------------------------------VPTQKTKKDTDG------------ 259

Query: 262 IPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEI 321
                          L  A+  +    + PE+ +P  + F++     +     FY+ T+ 
Sbjct: 260 ---------------LGVAVKGMCKTVKYPEVWKPSLYMFISLALNISTHEGHFYWYTDP 304

Query: 322 LNLEA---SFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLV 378
               A    F+G    VG +  M G   Y+  LK    R IL   Q+       LD+V +
Sbjct: 305 TAGPAFSQEFVGIIYAVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGMLDLVFI 364

Query: 379 SRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFG 438
            R NLT+GI D   V+   +    +++ +++P ++LS +LCP GIEGT FA  M I +FG
Sbjct: 365 KRWNLTLGIPDSLFVITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLMCIDSFG 424

Query: 439 STVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPK 486
                + G  +  +  ++   F NL L I I+ +   + + F+FL+P 
Sbjct: 425 QLASKWGGGFVLHAFGVTRHDFGNLWLVILIRNILRLVTVCFVFLVPD 472

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5Q2|FBT8_ARATH Probable folate-biopterin transporter 8, chloroplastic OS=Arabidopsis thaliana GN=At1g04570 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/214 (37%), Positives = 128/214 (59%), Gaps = 4/214 (1%)

Query: 274 FHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTAR 333
             S+K  I +L  A +  EI +P+ W  ++   VP LS  +F YQT++LNL+ S +G ++
Sbjct: 285 LESVKKQISNLKEAIQADEISQPLIWAVVSIAMVPLLSGSVFCYQTQVLNLDPSVIGMSK 344

Query: 334 VVGWVGLMLGTYTYNGYLKRLKLRRILLLTQV--GLSILSFLDIVLVSRMNLTVGISDKT 391
           V+G + L+  T  Y+ YLK L +R ++ + Q+  GLSIL  LD +LV ++NL  GIS++ 
Sbjct: 345 VIGQLMLLCLTVVYDRYLKTLPMRPLIHIIQLLYGLSIL--LDYILVKQINLGFGISNEV 402

Query: 392 MVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLAS 451
            VL  S+L + + QFK +PF +    +CP G EG++ +   S       V +F G GLA+
Sbjct: 403 YVLCFSSLAEILAQFKILPFAVRLASMCPQGCEGSVTSFLASTLCLSQIVSAFLGVGLAN 462

Query: 452 SLSISSGSFDNLLLGISIQALCTFIPIAFLFLIP 485
            + I+S ++ NL  GI IQ+L    P+ F+ L+P
Sbjct: 463 LIGITSSNYSNLSSGILIQSLAALAPLCFMHLVP 496

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIQ7|FBT7_ARATH Probable folate-biopterin transporter 7 OS=Arabidopsis thaliana GN=At1g64890 PE=2 SV=1

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 5/218 (2%)

Query: 261 QIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTE 320
            +PE  +P        ++  +  L    R+PEI   +AW  ++   VP L+  MF+YQT+
Sbjct: 210 NLPENPSPA-----GGIRKHLSDLSHVLRKPEISYSIAWIAVSTAVVPVLTGTMFFYQTK 264

Query: 321 ILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSR 380
            L ++AS LG ++V G + ++L  + YN +LK ++ R++L   QV ++     D++ V  
Sbjct: 265 FLKIDASLLGISKVFGQIAMLLWGFAYNRWLKAMRPRKLLTAIQVTIAFFVISDLLFVKG 324

Query: 381 MNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGST 440
           +   +G+SD   VL+ S  ++ +  FK +PF +L  +LCPPG EG+L A  MS       
Sbjct: 325 VYRDLGVSDSVYVLFFSGFLETLFYFKILPFTVLMARLCPPGCEGSLMAFVMSAIALAFI 384

Query: 441 VGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPI 478
           V  + G  LAS + ++   F     G++I+A C  IP+
Sbjct: 385 VSGYLGIVLASFVGVTEDDFSGFTRGLAIEACCVGIPL 422

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|O22780|FBT9_ARATH Probable folate-biopterin transporter 9, chloroplastic OS=Arabidopsis thaliana GN=At2g33280 PE=3 SV=2

 Score =  130 bits (326), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 114/194 (58%)

Query: 292 EILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYL 351
           EI +P+ W   +   VP LS  +F YQT++LNL+ S +G ++V+G + L+  T  Y+ Y 
Sbjct: 304 EISQPLIWIVSSIALVPLLSGSVFCYQTQVLNLDPSVIGMSKVIGQLMLLCLTVVYDRYW 363

Query: 352 KRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPF 411
           K+L +R ++ + Q+  +     D +LV ++NL  GIS+   VL  S++ + + QFK +PF
Sbjct: 364 KKLPMRALIHIVQLLYAFSLLFDYILVKQINLAFGISNTAFVLCFSSVAEILAQFKILPF 423

Query: 412 LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQA 471
            +L   +CP G EG++ +   S     S V  F G G+A+ + I+S ++ NL  GI IQ+
Sbjct: 424 SVLLANMCPGGCEGSITSFLASTLCLSSVVSGFTGVGMANMIGITSKNYSNLPAGILIQS 483

Query: 472 LCTFIPIAFLFLIP 485
           L   +P+ F+  +P
Sbjct: 484 LAALVPLWFIHYVP 497

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQN2|FBT3_ARATH Probable folate-biopterin transporter 3 OS=Arabidopsis thaliana GN=At1g79710 PE=2 SV=1

 Score =  120 bits (300), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 121/218 (55%), Gaps = 8/218 (3%)

Query: 283 SLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILN---LEASFLGTARVVGWVG 339
           +++  F+  E+ RP  +  L+     ++   MFY+ T+  +        +G+    G +G
Sbjct: 255 AIWKTFQYGEVWRPCLFMLLSAAVSLHIHEGMFYWYTDSKDGPSFSKEAVGSIMSFGAIG 314

Query: 340 LMLGTYTYNGYLKRLKLRRILLLTQVGLSILS-FLDIVLVSRMNLTVGISDKTMVLYGSA 398
            ++G   Y  +LK    R ++    + LS+LS FLD++LV R+NL +G+ D   ++    
Sbjct: 315 SLVGILLYQNFLKNFPFRNVVFWA-LSLSVLSGFLDLILVLRINLKLGLPDYFFIVVDEF 373

Query: 399 LVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSG 458
           +   +++ K++P L+LS +LCP G+EGT FAL MSI + G  V S+ G  L  +L ++  
Sbjct: 374 VSHMISRIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLVSSWGGGVLLHALKVTRT 433

Query: 459 SFDNLLLGISIQALCTFIPIAFLFLIPK---GATGVPA 493
            FDNL L I I++L   IPI  +FLIP     +T +PA
Sbjct: 434 QFDNLWLVIVIRSLLRVIPIGLVFLIPNVDSNSTILPA 471

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5FV41|FBT2_ARATH Probable folate-biopterin transporter 2 OS=Arabidopsis thaliana GN=At5g25050 PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 109/208 (52%), Gaps = 3/208 (1%)

Query: 283 SLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILN---LEASFLGTARVVGWVG 339
           +++   +  ++ RP  + +++     N+   +FY+ T+  +        +G    +G +G
Sbjct: 251 AMWRTMKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDGPLFAQETVGFILSIGSIG 310

Query: 340 LMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSAL 399
            +L    Y   LK    R + L TQ+  ++   LD++LV R+NL  G+ D   ++    +
Sbjct: 311 SILAATLYQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFRLNLKFGLPDYLFIVVDEIV 370

Query: 400 VDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGS 459
              + + K+MP L+L+ +LCP GIEGT FAL MSI N G    S+ G  +   L ++   
Sbjct: 371 SQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLMTSSWLGGIMLHVLKVTRTE 430

Query: 460 FDNLLLGISIQALCTFIPIAFLFLIPKG 487
           F NL L + ++ +   +P+ FLFL+PKG
Sbjct: 431 FGNLWLAVLVRNVMRLLPLCFLFLVPKG 458

Could mediate folate transport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
224115292	496	predicted protein [Populus trichocarpa]	0.997	0.991	0.748	0.0
255563949	497	transporter, putative [Ricinus communis]	1.0	0.991	0.744	0.0
225461028	496	PREDICTED: uncharacterized protein LOC10	0.993	0.987	0.737	0.0
356527032	493	PREDICTED: uncharacterized protein LOC10	0.983	0.983	0.711	0.0
356567365	493	PREDICTED: uncharacterized protein LOC10	0.983	0.983	0.713	0.0
357459543	495	hypothetical protein MTR_3g051190 [Medic	0.993	0.989	0.703	0.0
22327842	491	major facilitator protein [Arabidopsis t	0.971	0.975	0.646	0.0
297792951	491	integral membrane transporter family pro	0.965	0.969	0.642	0.0
9758266	483	unnamed protein product [Arabidopsis tha	0.955	0.975	0.63	1e-178
242051851	500	hypothetical protein SORBIDRAFT_03g00385	0.979	0.966	0.608	1e-169

>gi|224115292|ref|XP_002316993.1| predicted protein [Populus trichocarpa] gi|222860058|gb|EEE97605.1| predicted protein [Populus trichocarpa]

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/493 (74%), Positives = 421/493 (85%), Gaps = 1/493 (0%)

Query: 1   MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS 60
           +KQL   FG SF+WLICLIYFTQGFRSFVWTAVSYQLKD LK SPSASQFVS++AFFPWS
Sbjct: 5   VKQLNKAFGASFVWLICLIYFTQGFRSFVWTAVSYQLKDNLKLSPSASQFVSSIAFFPWS 64

Query: 61  IKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLG 120
           IKPLYGILSDCIPIKGRKRIPYLVI+T+LSLVPW +LG+++  RSS WHL VLLT QNLG
Sbjct: 65  IKPLYGILSDCIPIKGRKRIPYLVIATLLSLVPWPMLGIDSNLRSSQWHLTVLLTVQNLG 124

Query: 121 SAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFL 180
           SAMADVVVDAMIAEA +SERA+FAGDLQS+SWL+MA GGI GSLLGGYALTN++ID+IFL
Sbjct: 125 SAMADVVVDAMIAEAVRSERASFAGDLQSISWLSMAVGGIWGSLLGGYALTNLQIDKIFL 184

Query: 181 LFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIST 240
           LF+VLPAIQLLSCGLV EN   +KV  + ++S+  H VNGN +ILD ED    +K + S 
Sbjct: 185 LFSVLPAIQLLSCGLVGENSADSKVSHDSANSSNSHPVNGNGNILD-EDNILLKKSSASA 243

Query: 241 KKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWF 300
            +RK+++KN  KR     KS IPEK N L+  WFHSLK A YSL  AFRQP ILRPMAWF
Sbjct: 244 TRRKRSQKNGNKRASMRTKSLIPEKGNSLISHWFHSLKTATYSLLRAFRQPVILRPMAWF 303

Query: 301 FLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRIL 360
           FLA + VPNLSTVMFYYQTE+LNL+ASFLGTARVVGW+GLMLGT+TYN YLK +KLR+IL
Sbjct: 304 FLAQITVPNLSTVMFYYQTEVLNLDASFLGTARVVGWLGLMLGTFTYNRYLKTMKLRKIL 363

Query: 361 LLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCP 420
           L   VGLS+L+ LD++LVSR+NL  G+SDK MV++GSAL DAVNQFK MPFLILSGQLCP
Sbjct: 364 LWAHVGLSLLTLLDVILVSRVNLAYGVSDKIMVVFGSALSDAVNQFKLMPFLILSGQLCP 423

Query: 421 PGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAF 480
           PGIEGTLFALFMSI+N GST+GSF GAGLAS L++SSGSFDNL LGI+IQ LCTFIPIAF
Sbjct: 424 PGIEGTLFALFMSINNLGSTLGSFVGAGLASILNLSSGSFDNLGLGIAIQVLCTFIPIAF 483

Query: 481 LFLIPKGATGVPA 493
           LFLIPK ATG+ A
Sbjct: 484 LFLIPKEATGISA 496

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563949|ref|XP_002522974.1| transporter, putative [Ricinus communis] gi|223537786|gb|EEF39404.1| transporter, putative [Ricinus communis]

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/493 (74%), Positives = 418/493 (84%)

Query: 1   MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS 60
           +KQL+  FG SFLWLICLIYFTQGFRSFVWTAVSY LKD+LK SPSASQFVS+VAFFPWS
Sbjct: 5   IKQLRRSFGASFLWLICLIYFTQGFRSFVWTAVSYHLKDRLKLSPSASQFVSSVAFFPWS 64

Query: 61  IKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLG 120
           IKPLYGI+SDCIPIKGRKRIPYLVI+TVLSLVPW +LGL +  RSS WHLI+LLT QNLG
Sbjct: 65  IKPLYGIVSDCIPIKGRKRIPYLVIATVLSLVPWPVLGLKSTLRSSRWHLIILLTVQNLG 124

Query: 121 SAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFL 180
           SAMADVVVDAMIAEA + ERA+FAGDLQS+SWL+MA GG+CGSL GGYALT+++ID IFL
Sbjct: 125 SAMADVVVDAMIAEAVRFERASFAGDLQSISWLSMAVGGVCGSLFGGYALTSLQIDTIFL 184

Query: 181 LFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIST 240
           LF+VLPAIQLLSCG V+EN V +KVL EF+SS     +     +L DED F  +K N ST
Sbjct: 185 LFSVLPAIQLLSCGFVEENSVGSKVLPEFASSTSSSHLENGNGVLLDEDSFLAKKSNRST 244

Query: 241 KKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWF 300
            +RK+++KN  KR+     S   EK N L + W HSLKAA YSL  AFRQP ILRPMAWF
Sbjct: 245 SRRKRSQKNNIKRIDISSNSHNLEKGNSLALGWLHSLKAASYSLLHAFRQPIILRPMAWF 304

Query: 301 FLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRIL 360
           FLAHV +PNLSTVMFYYQTE LNL+ASFLGTARVVGW+GLMLGT+TYN  LKR+KLR+IL
Sbjct: 305 FLAHVTMPNLSTVMFYYQTEALNLDASFLGTARVVGWLGLMLGTFTYNHQLKRMKLRKIL 364

Query: 361 LLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCP 420
           L  Q+GLS++S LD+VLVSRM+L  GISDK MVL GSAL DA+NQFKFMPFLILSGQLCP
Sbjct: 365 LCAQIGLSLMSLLDMVLVSRMSLAYGISDKIMVLCGSALADAINQFKFMPFLILSGQLCP 424

Query: 421 PGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAF 480
           PGIEGTLFALFMSI+N GST+GSF GAGLAS L++SSGSFDNL+LGI+IQ LCT+IP+A 
Sbjct: 425 PGIEGTLFALFMSINNLGSTLGSFTGAGLASFLNLSSGSFDNLVLGIAIQVLCTYIPVAL 484

Query: 481 LFLIPKGATGVPA 493
           LFLIPK ATG+ A
Sbjct: 485 LFLIPKEATGISA 497

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461028|ref|XP_002281212.1| PREDICTED: uncharacterized protein LOC100257271 [Vitis vinifera] gi|297737407|emb|CBI26608.3| unnamed protein product [Vitis vinifera]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/491 (73%), Positives = 415/491 (84%), Gaps = 1/491 (0%)

Query: 1   MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS 60
           +KQL+  FG SFLWLICLIYFTQGFR+FVWTAVSYQLKD+LK SPSASQFV ++A FPWS
Sbjct: 5   LKQLRKSFGFSFLWLICLIYFTQGFRTFVWTAVSYQLKDRLKLSPSASQFVYSIAIFPWS 64

Query: 61  IKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLG 120
           IKPLYGILSDCIPI GRKRIPYLV++++ SL PWL+LGLNA    S  HL++ LT QNLG
Sbjct: 65  IKPLYGILSDCIPIGGRKRIPYLVVASIFSLFPWLVLGLNAPLMDSKVHLMISLTVQNLG 124

Query: 121 SAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFL 180
           SAMADVVVDAMIAEA + ERAAF GDLQSLSWLAMA GGICGSLLGGYALTNIEI +IFL
Sbjct: 125 SAMADVVVDAMIAEAVRFERAAFTGDLQSLSWLAMAIGGICGSLLGGYALTNIEIGQIFL 184

Query: 181 LFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIST 240
           LF++LP+IQLLSCGLVKEN + +K L E S+S     VNG+ ++LD ED  + E+  IST
Sbjct: 185 LFSLLPSIQLLSCGLVKENPLGSKFLPELSNSGSSQIVNGDNNVLD-EDSSNSERSRIST 243

Query: 241 KKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWF 300
            +RKK + N+KKR+    KSQI EK+  L +QWFH+LK A  SLYSAFRQP ILRPMAWF
Sbjct: 244 SRRKKRRTNKKKRVVIKSKSQISEKDGSLALQWFHTLKMAACSLYSAFRQPIILRPMAWF 303

Query: 301 FLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRIL 360
           FLAHV+VPNLSTVMFYYQTE LNLEASFLGT RVVGW+GLMLGT+TYN YLK+++LRRIL
Sbjct: 304 FLAHVSVPNLSTVMFYYQTEFLNLEASFLGTVRVVGWLGLMLGTFTYNHYLKKMRLRRIL 363

Query: 361 LLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCP 420
           +L  VG S +S L+I LV+R N+  GISDK MVL GSA  DA++QFKFMPFLILSG+LCP
Sbjct: 364 MLAHVGYSFMSLLNIALVARTNVVFGISDKIMVLCGSAFHDAIHQFKFMPFLILSGRLCP 423

Query: 421 PGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAF 480
           PGIEGTLFALFMSI+N G+T+GSF GAGLAS L+ISSGSFDNLLLG+ IQ LCTFIPIAF
Sbjct: 424 PGIEGTLFALFMSINNLGATIGSFMGAGLASVLNISSGSFDNLLLGMVIQVLCTFIPIAF 483

Query: 481 LFLIPKGATGV 491
           LFLIPK ATG+
Sbjct: 484 LFLIPKEATGI 494

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527032|ref|XP_003532118.1| PREDICTED: uncharacterized protein LOC100781251 [Glycine max]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/489 (71%), Positives = 402/489 (82%), Gaps = 4/489 (0%)

Query: 2   KQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI 61
           KQL   FG SFLWLIC+IYFTQGFRSFVWT++SYQLKD LK SPSASQFV +VAFFPWSI
Sbjct: 6   KQLNAAFGASFLWLICMIYFTQGFRSFVWTSISYQLKDNLKLSPSASQFVFSVAFFPWSI 65

Query: 62  KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGS 121
           KPLYGILSDCIPIKGRKRIPYLVI+TVLSLVPW ILGL++  R STWHL+VLLTAQNLGS
Sbjct: 66  KPLYGILSDCIPIKGRKRIPYLVIATVLSLVPWFILGLSSTLRDSTWHLMVLLTAQNLGS 125

Query: 122 AMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLL 181
           AMADVVVDAMIAEA + ERA+FAGDLQS+SW +MA GGICGSLLGGYAL+N++ID IFLL
Sbjct: 126 AMADVVVDAMIAEAVRYERASFAGDLQSISWSSMALGGICGSLLGGYALSNLQIDTIFLL 185

Query: 182 FTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTK 241
           F VLP IQLLSC  V+EN  ++K   E S     H    N S LD++   +++ ++ ST+
Sbjct: 186 FCVLPCIQLLSCCFVEENSENSKAEPEDSIVRDSHM---NGSTLDEDSPLTKKSHS-STR 241

Query: 242 KRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFF 301
           +RKK KKN K R     KS+I +K + L ++WFHSLK AIY L  AFRQP I RPM+WFF
Sbjct: 242 RRKKGKKNAKGRAVNSSKSKIYKKGDSLALKWFHSLKEAIYDLCRAFRQPMIWRPMSWFF 301

Query: 302 LAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILL 361
           LAHV +PNLSTV+FYY+TE+L LEASFLGT+RVVGW+GLMLGT+ YN +LK + LR+IL+
Sbjct: 302 LAHVTIPNLSTVIFYYETEVLKLEASFLGTSRVVGWLGLMLGTFIYNRHLKYMTLRKILM 361

Query: 362 LTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPP 421
              +GL+ L+ L I +VSR N+  GISDK MVL+GSAL D +NQFKFMPFLILSGQLCPP
Sbjct: 362 CAHIGLAFLNLLQIAVVSRKNIAFGISDKIMVLFGSALADGINQFKFMPFLILSGQLCPP 421

Query: 422 GIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFL 481
           GIEGTLFALFMSI+N GSTVGSF GAGLAS L+I SGSFDNLLLGI + ALC FIPIAFL
Sbjct: 422 GIEGTLFALFMSINNLGSTVGSFVGAGLASILNIDSGSFDNLLLGIIVHALCNFIPIAFL 481

Query: 482 FLIPKGATG 490
           FLIPK ATG
Sbjct: 482 FLIPKEATG 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567365|ref|XP_003551891.1| PREDICTED: uncharacterized protein LOC100796680 [Glycine max]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/489 (71%), Positives = 400/489 (81%), Gaps = 4/489 (0%)

Query: 2   KQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI 61
           KQL   FG SFLWLICLIYFTQGFRSFVWT++SYQLKD LK SPSASQFV +VAFFPWSI
Sbjct: 6   KQLNAAFGASFLWLICLIYFTQGFRSFVWTSISYQLKDNLKLSPSASQFVFSVAFFPWSI 65

Query: 62  KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGS 121
           KPLYGILSDCIPIKGRKRIPYLVI+TVLSLVPWLILGL +  R STWHL+VLLTAQNLGS
Sbjct: 66  KPLYGILSDCIPIKGRKRIPYLVIATVLSLVPWLILGLISTLRDSTWHLMVLLTAQNLGS 125

Query: 122 AMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLL 181
           AMADVVVDAMIAEA + ERA+FAGDLQS+SW +MA GGICGSLLGGYAL+N+ ID IFLL
Sbjct: 126 AMADVVVDAMIAEAVRYERASFAGDLQSISWSSMALGGICGSLLGGYALSNLRIDTIFLL 185

Query: 182 FTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTK 241
           F VLP IQLLSC  V+E   +TK   E S     H    N S LD++   S++ ++ ST+
Sbjct: 186 FCVLPCIQLLSCCFVEEKSENTKAEPEDSIVRDSHM---NGSTLDEDSPLSKKSHS-STR 241

Query: 242 KRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFF 301
           +RKK KKN K R     KS+I +K + L ++WFHSLK AIY L  AFRQP I RPM+WFF
Sbjct: 242 RRKKGKKNAKGRAVNSSKSKIYKKGDSLALKWFHSLKEAIYDLCRAFRQPMIWRPMSWFF 301

Query: 302 LAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILL 361
           LAHV +PNLSTV+FYY+TE+L LEASFLGT+RVVGW+GLM+GT+ YN +LK + LR+IL+
Sbjct: 302 LAHVTIPNLSTVIFYYETEVLKLEASFLGTSRVVGWLGLMMGTFIYNRHLKYMTLRKILM 361

Query: 362 LTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPP 421
              +GL+ L+ L I +VSR N+  GISDK MVL+GSAL D +NQFKFMPFLILSGQLCPP
Sbjct: 362 CAHIGLAFLNLLQIAVVSRKNIAFGISDKIMVLFGSALADGINQFKFMPFLILSGQLCPP 421

Query: 422 GIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFL 481
           GIEGTLFALFMSI+N GST+GSF GAGLAS L+I SGSFDNLLLGI + ALC FIPIAFL
Sbjct: 422 GIEGTLFALFMSINNLGSTLGSFVGAGLASILNIDSGSFDNLLLGIIVHALCNFIPIAFL 481

Query: 482 FLIPKGATG 490
           FLIPK ATG
Sbjct: 482 FLIPKEATG 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459543|ref|XP_003600052.1| hypothetical protein MTR_3g051190 [Medicago truncatula] gi|355489100|gb|AES70303.1| hypothetical protein MTR_3g051190 [Medicago truncatula]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/492 (70%), Positives = 403/492 (81%), Gaps = 2/492 (0%)

Query: 2   KQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI 61
            +L   FG SFLWLICLIYFTQGFRSFVWTA+SYQLKD L  SPSASQFV +VAFFPWSI
Sbjct: 6   NRLNAAFGFSFLWLICLIYFTQGFRSFVWTAISYQLKDNLHLSPSASQFVFSVAFFPWSI 65

Query: 62  KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGS 121
           KPLYGILSDCIPIKG KRI YLVI+TVLSLVPW ILGL++  R+STWHL+V+LT QNLGS
Sbjct: 66  KPLYGILSDCIPIKGSKRISYLVIATVLSLVPWFILGLSSTLRNSTWHLMVILTVQNLGS 125

Query: 122 AMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLL 181
           AMADVVVDAMIAEA + ++A FAGDLQSLSW +MA GGICGSLLGG AL++++ID IFLL
Sbjct: 126 AMADVVVDAMIAEAVRYDKAKFAGDLQSLSWSSMAVGGICGSLLGGIALSSLQIDAIFLL 185

Query: 182 FTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTK 241
           F+VLP IQLLSC  VKEN V+++VL E S +   H  NG+ S +D++  F+++ ++ ST+
Sbjct: 186 FSVLPCIQLLSCFSVKENSVNSEVLVEDSIAKDLH-TNGSSSTVDEDSSFTKKSHS-STR 243

Query: 242 KRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFF 301
           KRKK KKN K R     KS+I EK + L  +WFHSLK AIY L  AFRQP ILRPM+WFF
Sbjct: 244 KRKKGKKNTKNRAVNTSKSKILEKGDSLATKWFHSLKKAIYDLCRAFRQPMILRPMSWFF 303

Query: 302 LAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILL 361
           LAH+ VPNLSTV+FYY+TE+L LEASFLGT RVVGW+GLMLGT+ YN +LK + LRRIL+
Sbjct: 304 LAHITVPNLSTVLFYYETEVLKLEASFLGTVRVVGWLGLMLGTFVYNRHLKHMTLRRILM 363

Query: 362 LTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPP 421
              V L+ L+ L I +VSR N+  G+ D+ MVL+GSALVD +NQFKFMPFLILSGQLCPP
Sbjct: 364 YAHVALAFLNLLQIAVVSRKNIAFGVPDRVMVLFGSALVDGINQFKFMPFLILSGQLCPP 423

Query: 422 GIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFL 481
           GIEGTLFALFMSI+N G+T+GSF GAGLAS L+I SGSFDNLLLGI I ALC FIPIAFL
Sbjct: 424 GIEGTLFALFMSINNLGTTIGSFVGAGLASILNIDSGSFDNLLLGIVIHALCNFIPIAFL 483

Query: 482 FLIPKGATGVPA 493
           FLIPK ATG  A
Sbjct: 484 FLIPKEATGASA 495

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327842|ref|NP_200297.2| major facilitator protein [Arabidopsis thaliana] gi|75158734|sp|Q8RWQ5.1|FBT4_ARATH RecName: Full=Probable folate-biopterin transporter 4 gi|20147215|gb|AAM10323.1| AT5g54860/MBG8_12 [Arabidopsis thaliana] gi|332009167|gb|AED96550.1| major facilitator protein [Arabidopsis thaliana]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/500 (64%), Positives = 398/500 (79%), Gaps = 21/500 (4%)

Query: 1   MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS 60
           +KQL++ FGV+FLWL+CLIYFTQGFRSFVWTAVSYQLKD+L+ SPSASQFV +VAFFPWS
Sbjct: 5   LKQLRSAFGVAFLWLVCLIYFTQGFRSFVWTAVSYQLKDRLQLSPSASQFVFSVAFFPWS 64

Query: 61  IKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLG 120
           IKPLYGI+SDCIPI G+KR PYLVISTVLSLVPWL+LGL++  RSS+ +L++ LT QNLG
Sbjct: 65  IKPLYGIISDCIPIGGKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLTVQNLG 124

Query: 121 SAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFL 180
           SAMADVV+DAMIAEA + E+A+FAGDLQS+SW AMA GG+CGSLLGGYAL+N++I+ IFL
Sbjct: 125 SAMADVVIDAMIAEAVRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKIETIFL 184

Query: 181 LFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIST 240
           LFTVLPA+QLLSC LV+E+  + + L E   SN + +    +S+  +++     K N   
Sbjct: 185 LFTVLPALQLLSCALVEESPANNEPLPELLDSNEFEE----KSLTSNDNYPDTSKSNTRR 240

Query: 241 KKR-------KKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEI 293
           +K          N K++ ++          +++  L  QWF SLKAA + L  AF+QP I
Sbjct: 241 RKGQKKGKKGDSNGKSETQK----------KQSKSLASQWFQSLKAATFGLGRAFKQPII 290

Query: 294 LRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKR 353
           LRPMAWFF+AH+ VPNLSTVMFYYQTE+L L+A+FLGTARVVGW+GLM GT+ YN YL+ 
Sbjct: 291 LRPMAWFFIAHITVPNLSTVMFYYQTEVLQLDAAFLGTARVVGWLGLMFGTFIYNRYLQD 350

Query: 354 LKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLI 413
           + LR+ LL   +GLS+   LD+VLVSR N+  G+SDKTMVL+GSAL DA+NQ KFMPFLI
Sbjct: 351 MTLRKSLLFAHIGLSVTILLDMVLVSRANVGYGVSDKTMVLFGSALGDAINQLKFMPFLI 410

Query: 414 LSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALC 473
           LSG+LCPPGIEGTLFALFMSI+N G+TVGSF GAGLAS L ISSGSFDN+ +G++IQ  C
Sbjct: 411 LSGRLCPPGIEGTLFALFMSINNLGNTVGSFMGAGLASLLGISSGSFDNMFMGLAIQVFC 470

Query: 474 TFIPIAFLFLIPKGATGVPA 493
           T+IP+ FLFLIPK ATGV A
Sbjct: 471 TYIPVLFLFLIPKEATGVSA 490

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792951|ref|XP_002864360.1| integral membrane transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297310195|gb|EFH40619.1| integral membrane transporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/503 (64%), Positives = 390/503 (77%), Gaps = 27/503 (5%)

Query: 1   MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS 60
           +KQL++ FGV+FLWL+CLIYFTQGFRSFVWTAVSYQLKD+L+ SPSASQFV +VAFFPWS
Sbjct: 5   LKQLRSAFGVAFLWLVCLIYFTQGFRSFVWTAVSYQLKDRLQLSPSASQFVFSVAFFPWS 64

Query: 61  IKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLG 120
           IKPLYGI+SDCIPI G+KR PYLV+STVLSLVPWL LGL++  RSS+ +L++ LT QNLG
Sbjct: 65  IKPLYGIVSDCIPIGGKKRTPYLVLSTVLSLVPWLFLGLDSTSRSSSLYLMIFLTVQNLG 124

Query: 121 SAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFL 180
           SAMADVV+DAMIAEA + E+A+FAGDLQS+SW AMA GG+CGSLLGGYAL+N++I+ IFL
Sbjct: 125 SAMADVVIDAMIAEAVRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKIETIFL 184

Query: 181 LFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIST 240
           LFTVLP +QLLSC LV+E   + + L E   SN +                 EEK  +S+
Sbjct: 185 LFTVLPTLQLLSCALVEEIPANNEPLPELLDSNEF-----------------EEKSKLSS 227

Query: 241 KKRKKNKKNQKKRMFKIRKSQIPEKNNP----------LVIQWFHSLKAAIYSLYSAFRQ 290
              +   K+  +R    +K +    N            L  QWF SLKAA + L  AF+Q
Sbjct: 228 DNYRDTNKSSTRRRKGQKKGKKGASNGKSEKQKKQSKSLASQWFQSLKAATFGLGRAFKQ 287

Query: 291 PEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGY 350
           P ILRPMAWFF+AH+ VPNLSTVMFYYQTE+L L+A+FLGTARVVGW+GLM GT+ YN Y
Sbjct: 288 PIILRPMAWFFIAHITVPNLSTVMFYYQTEVLQLDAAFLGTARVVGWLGLMFGTFIYNRY 347

Query: 351 LKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMP 410
           L+ + LR+ LL   +GLSI   LD+VLVSR N+  G+SDKTMVL+GSAL DA+NQ KFMP
Sbjct: 348 LQDMTLRKSLLFAHIGLSITILLDMVLVSRENVGYGVSDKTMVLFGSALGDAINQLKFMP 407

Query: 411 FLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQ 470
           FLILSG+LCPPGIEGTLFALFMSI+N G+TVGSF GAGLAS L ISSGSF+N+ +G++IQ
Sbjct: 408 FLILSGRLCPPGIEGTLFALFMSINNLGNTVGSFMGAGLASLLGISSGSFENMFMGLAIQ 467

Query: 471 ALCTFIPIAFLFLIPKGATGVPA 493
             CT+IP+ FLFLIPK ATGV A
Sbjct: 468 VFCTYIPVLFLFLIPKEATGVSA 490

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758266|dbj|BAB08765.1| unnamed protein product [Arabidopsis thaliana]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 315/500 (63%), Positives = 390/500 (78%), Gaps = 29/500 (5%)

Query: 1   MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS 60
           +KQL++ FGV+FLWL+CLIYFTQ        AVSYQLKD+L+ SPSASQFV +VAFFPWS
Sbjct: 5   LKQLRSAFGVAFLWLVCLIYFTQ--------AVSYQLKDRLQLSPSASQFVFSVAFFPWS 56

Query: 61  IKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLG 120
           IKPLYGI+SDCIPI G+KR PYLVISTVLSLVPWL+LGL++  RSS+ +L++ LT QNLG
Sbjct: 57  IKPLYGIISDCIPIGGKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLTVQNLG 116

Query: 121 SAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFL 180
           SAMADVV+DAMIAEA + E+A+FAGDLQS+SW AMA GG+CGSLLGGYAL+N++I+ IFL
Sbjct: 117 SAMADVVIDAMIAEAVRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKIETIFL 176

Query: 181 LFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIST 240
           LFTVLPA+QLLSC LV+E+  + + L E   SN + +    +S+  +++     K N   
Sbjct: 177 LFTVLPALQLLSCALVEESPANNEPLPELLDSNEFEE----KSLTSNDNYPDTSKSNTRR 232

Query: 241 KKR-------KKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEI 293
           +K          N K++ ++          +++  L  QWF SLKAA + L  AF+QP I
Sbjct: 233 RKGQKKGKKGDSNGKSETQK----------KQSKSLASQWFQSLKAATFGLGRAFKQPII 282

Query: 294 LRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKR 353
           LRPMAWFF+AH+ VPNLSTVMFYYQTE+L L+A+FLGTARVVGW+GLM GT+ YN YL+ 
Sbjct: 283 LRPMAWFFIAHITVPNLSTVMFYYQTEVLQLDAAFLGTARVVGWLGLMFGTFIYNRYLQD 342

Query: 354 LKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLI 413
           + LR+ LL   +GLS+   LD+VLVSR N+  G+SDKTMVL+GSAL DA+NQ KFMPFLI
Sbjct: 343 MTLRKSLLFAHIGLSVTILLDMVLVSRANVGYGVSDKTMVLFGSALGDAINQLKFMPFLI 402

Query: 414 LSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALC 473
           LSG+LCPPGIEGTLFALFMSI+N G+TVGSF GAGLAS L ISSGSFDN+ +G++IQ  C
Sbjct: 403 LSGRLCPPGIEGTLFALFMSINNLGNTVGSFMGAGLASLLGISSGSFDNMFMGLAIQVFC 462

Query: 474 TFIPIAFLFLIPKGATGVPA 493
           T+IP+ FLFLIPK ATGV A
Sbjct: 463 TYIPVLFLFLIPKEATGVSA 482

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051851|ref|XP_002455071.1| hypothetical protein SORBIDRAFT_03g003850 [Sorghum bicolor] gi|241927046|gb|EES00191.1| hypothetical protein SORBIDRAFT_03g003850 [Sorghum bicolor]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 299/491 (60%), Positives = 373/491 (75%), Gaps = 8/491 (1%)

Query: 3   QLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIK 62
           ++   FG SFL L+CLIYF QGFRSFVWTAVSYQ+KD +K SPS SQF+ ++A+FPWSIK
Sbjct: 14  RMAAAFGPSFLCLVCLIYFIQGFRSFVWTAVSYQMKDVMKLSPSTSQFLVSLAYFPWSIK 73

Query: 63  PLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSA 122
           P+YGILSDCIPIK RKRIPYL+IS+ LSL+PWLILGL+   RSS   L  LL  QNLGSA
Sbjct: 74  PIYGILSDCIPIKQRKRIPYLIISSCLSLLPWLILGLSQSLRSSANMLTALLVVQNLGSA 133

Query: 123 MADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLF 182
           MADVV+DAM+AEA +S    FAGDLQSLSW +MA GGI GSLLGGYAL+N+ I  I+++F
Sbjct: 134 MADVVIDAMVAEAVRSAGPEFAGDLQSLSWSSMAVGGIFGSLLGGYALSNLPIHAIYVVF 193

Query: 183 TVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILD--DEDGFSEEKYNIST 240
           + LP +QL+SC  V+++       K F S+N  H+   N+S +    E G SE      T
Sbjct: 194 SALPFLQLVSCMFVEDSP------KGFHSANDEHKYADNQSSVTAFSEKGSSEALRYEGT 247

Query: 241 KKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWF 300
           ++RK  +KN K+R    R     + N  +      SL++A +SL +AF+QP ILRPMAWF
Sbjct: 248 RRRKGTRKNNKRRSLSKRTESDEKHNGSINSLPSLSLRSAFFSLCTAFKQPNILRPMAWF 307

Query: 301 FLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRIL 360
           F ++V +PN+STVMFYYQTE LNL+ASFLGTARV+GW  LMLGTYTYN Y K+ KLR IL
Sbjct: 308 FFSNVTIPNISTVMFYYQTEDLNLDASFLGTARVIGWFSLMLGTYTYNRYFKQKKLRNIL 367

Query: 361 LLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCP 420
           +   VGL++++ LDIVLVSR+++  GI+DK MVL+GSAL DA+NQFK MPFLILSGQLCP
Sbjct: 368 VFAHVGLAVITLLDIVLVSRLHVQYGIADKYMVLWGSALGDAINQFKMMPFLILSGQLCP 427

Query: 421 PGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAF 480
           PGIEGTLFALFMSI+N GSTVGSF G+ LAS+L++++G FDNL LG+ +Q +CT +PI F
Sbjct: 428 PGIEGTLFALFMSINNLGSTVGSFLGSALASALNLTTGQFDNLALGLGVQMICTLLPIGF 487

Query: 481 LFLIPKGATGV 491
           L LIPK  TG+
Sbjct: 488 LSLIPKEVTGL 498

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	493
TAIR|locus:2160150	491	AT5G54860 "AT5G54860" [Arabido	0.985	0.989	0.582	2.6e-150
TAIR|locus:2010911	442	AT1G64890 "AT1G64890" [Arabido	0.409	0.457	0.292	1.2e-48
TAIR|locus:2197803	542	AT1G04570 "AT1G04570" [Arabido	0.421	0.383	0.334	3.5e-46
TAIR|locus:2045462	560	AT2G32040 "AT2G32040" [Arabido	0.450	0.396	0.306	4.3e-45
TAIR|locus:2051078	538	AT2G33280 "AT2G33280" [Arabido	0.423	0.388	0.296	1.5e-43
UNIPROTKB|Q55721	494	slr0642 "Folate-biopterin tran	0.423	0.423	0.333	4.6e-42
TAIR|locus:2017814	497	AT1G79710 "AT1G79710" [Arabido	0.425	0.422	0.307	1.2e-35
TAIR|locus:2179285	499	AT5G25050 "AT5G25050" [Arabido	0.415	0.410	0.278	1.3e-34
TAIR|locus:2183810	503	AT5G10820 "AT5G10820" [Arabido	0.419	0.411	0.280	5e-30
GENEDB_PFALCIPARUM|PF11_0172	455	PF11_0172 "folate/biopterin tr	0.387	0.419	0.261	2e-24

TAIR|locus:2160150 AT5G54860 "AT5G54860" [Arabidopsis thaliana (taxid:3702)]

 Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
 Identities = 287/493 (58%), Positives = 345/493 (69%)

Query:     1 MKQLKNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS 60
             +KQL++ FGV+FLWL+CLIYFTQGFRSFVWTAVSYQLKD+L+ SPSASQFV +VAFFPWS
Sbjct:     5 LKQLRSAFGVAFLWLVCLIYFTQGFRSFVWTAVSYQLKDRLQLSPSASQFVFSVAFFPWS 64

Query:    61 IKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLG 120
             IKPLYGI+SDCIPI G+KR PYLVISTVLSLVPWL+LGL++  RSS+ +L++ LT QNLG
Sbjct:    65 IKPLYGIISDCIPIGGKKRTPYLVISTVLSLVPWLVLGLDSTSRSSSLYLMIFLTVQNLG 124

Query:   121 SXXXXXXXXXXXXXXXXXXXXXXXGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFL 180
             S                       GDLQS+SW AMA GG+CGSLLGGYAL+N++I+ IFL
Sbjct:   125 SAMADVVIDAMIAEAVRLEKASFAGDLQSVSWFAMAVGGVCGSLLGGYALSNLKIETIFL 184

Query:   181 LFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEXXXXXX 240
             LFTVLPA+QLLSC LV+E+  + + L E   SN +      E  L   D + +       
Sbjct:   185 LFTVLPALQLLSCALVEESPANNEPLPELLDSNEFE-----EKSLTSNDNYPDTSKSNTR 239

Query:   241 XXXXXXXXXXXXXXXXXXXSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWF 300
                                 +   K+  L  QWF SLKAA + L  AF+QP ILRPMAWF
Sbjct:   240 RRKGQKKGKKGDSNGKSETQKKQSKS--LASQWFQSLKAATFGLGRAFKQPIILRPMAWF 297

Query:   301 FLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYXXXXXXXXXX 360
             F+AH+ VPNLSTVMFYYQTE+L L+A+FLGTARVVGW+GLM GT+ YN Y          
Sbjct:   298 FIAHITVPNLSTVMFYYQTEVLQLDAAFLGTARVVGWLGLMFGTFIYNRYLQDMTLRKSL 357

Query:   361 XXTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCP 420
                 +GLS+   LD+VLVSR N+  G+SDKTMVL+GSAL DA+NQ KFMPFLILSG+LCP
Sbjct:   358 LFAHIGLSVTILLDMVLVSRANVGYGVSDKTMVLFGSALGDAINQLKFMPFLILSGRLCP 417

Query:   421 PGIEGTLFALFMSISNFGSTVGSFFXXXXXXXXXXXXXXFDNLLLGISIQALCTFIPIAF 480
             PGIEGTLFALFMSI+N G+TVGSF               FDN+ +G++IQ  CT+IP+ F
Sbjct:   418 PGIEGTLFALFMSINNLGNTVGSFMGAGLASLLGISSGSFDNMFMGLAIQVFCTYIPVLF 477

Query:   481 LFLIPKGATGVPA 493
             LFLIPK ATGV A
Sbjct:   478 LFLIPKEATGVSA 490

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2010911 AT1G64890 "AT1G64890" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.2e-48, Sum P(2) = 1.2e-48
 Identities = 59/202 (29%), Positives = 98/202 (48%)

Query:   277 LKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVG 336
             ++  +  L    R+PEI   +AW  ++   VP L+  MF+YQT+ L ++AS LG ++V G
Sbjct:   221 IRKHLSDLSHVLRKPEISYSIAWIAVSTAVVPVLTGTMFFYQTKFLKIDASLLGISKVFG 280

Query:   337 WVGLMLGTYTYNGYXXXXXXXXXXXXTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYG 396
              + ++L  + YN +             QV ++     D++ V  +   +G+SD   VL+ 
Sbjct:   281 QIAMLLWGFAYNRWLKAMRPRKLLTAIQVTIAFFVISDLLFVKGVYRDLGVSDSVYVLFF 340

Query:   397 SALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFXXXXXXXXXXX 456
             S  ++ +  FK +PF +L  +LCPPG EG+L A  MS       V  +            
Sbjct:   341 SGFLETLFYFKILPFTVLMARLCPPGCEGSLMAFVMSAIALAFIVSGYLGIVLASFVGVT 400

Query:   457 XXXFDNLLLGISIQALCTFIPI 478
                F     G++I+A C  IP+
Sbjct:   401 EDDFSGFTRGLAIEACCVGIPL 422

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2197803 AT1G04570 "AT1G04570" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 3.5e-46, Sum P(2) = 3.5e-46
 Identities = 71/212 (33%), Positives = 110/212 (51%)

Query:   276 SLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVV 335
             S+K  I +L  A +  EI +P+ W  ++   VP LS  +F YQT++LNL+ S +G ++V+
Sbjct:   287 SVKKQISNLKEAIQADEISQPLIWAVVSIAMVPLLSGSVFCYQTQVLNLDPSVIGMSKVI 346

Query:   336 GWVGLMLGTYTYNGYXXXXXXXXXXXXTQV--GLSILSFLDIVLVSRMNLTVGISDKTMV 393
             G + L+  T  Y+ Y             Q+  GLSIL  LD +LV ++NL  GIS++  V
Sbjct:   347 GQLMLLCLTVVYDRYLKTLPMRPLIHIIQLLYGLSIL--LDYILVKQINLGFGISNEVYV 404

Query:   394 LYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFXXXXXXXX 453
             L  S+L + + QFK +PF +    +CP G EG++ +   S       V +F         
Sbjct:   405 LCFSSLAEILAQFKILPFAVRLASMCPQGCEGSVTSFLASTLCLSQIVSAFLGVGLANLI 464

Query:   454 XXXXXXFDNLLLGISIQALCTFIPIAFLFLIP 485
                   + NL  GI IQ+L    P+ F+ L+P
Sbjct:   465 GITSSNYSNLSSGILIQSLAALAPLCFMHLVP 496

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2045462 AT2G32040 "AT2G32040" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 4.3e-45, Sum P(2) = 4.3e-45
 Identities = 69/225 (30%), Positives = 108/225 (48%)

Query:   264 EKNNPLVIQ--WFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEI 321
             +K N  ++   +  + K  +  L+ A +QP +  P  + FL   A P+  + MFY+ T  
Sbjct:   319 QKENITLLSPGFLQTSKQNMIQLWGAIKQPNVFLPTLFIFLWQ-ATPHSDSAMFYFTTNK 377

Query:   322 LNLEASFLGTARVVGWVGLMLGTYTYNGYXXXXXXXXXXXXTQVGLSILSFLDIVLVSRM 381
             L     FLG  ++V  +  +LG   YNG+            T +  + L    ++LVS  
Sbjct:   378 LGFTPEFLGRVKLVTSIASLLGVGLYNGFLKTVPLRKIFLVTTIFGTGLGMTQVILVSGF 437

Query:   382 NLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTV 441
             N  +GISD+   +  S ++  + Q  FMP L+L+ +LCP G+E TLFA  MSISN GS +
Sbjct:   438 NRQLGISDEWFAIGDSLILTVLAQASFMPVLVLAARLCPEGMEATLFATLMSISNGGSVL 497

Query:   442 GSFFXXXXXXXXXXXXXXFDNLLLGISIQALCTFIPIAFLFLIPK 486
             G                 F NL   I +  L + +P+  L L+P+
Sbjct:   498 GGLMGAGLTQAFGITRDSFGNLSTLIILCNLSSLLPLPLLGLLPR 542

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0008517 "folic acid transporter activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0015231 "5-formyltetrahydrofolate transporter activity" evidence=IDA

GO:0015350 "methotrexate transporter activity" evidence=IDA

GO:0051958 "methotrexate transport" evidence=IDA

TAIR|locus:2051078 AT2G33280 "AT2G33280" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 1.5e-43, Sum P(2) = 1.5e-43
 Identities = 62/209 (29%), Positives = 100/209 (47%)

Query:   277 LKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVG 336
             +K     L    +  EI +P+ W   +   VP LS  +F YQT++LNL+ S +G ++V+G
Sbjct:   289 VKKQFLDLKGIVQVDEISQPLIWIVSSIALVPLLSGSVFCYQTQVLNLDPSVIGMSKVIG 348

Query:   337 WVGLMLGTYTYNGYXXXXXXXXXXXXTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYG 396
              + L+  T  Y+ Y             Q+  +     D +LV ++NL  GIS+   VL  
Sbjct:   349 QLMLLCLTVVYDRYWKKLPMRALIHIVQLLYAFSLLFDYILVKQINLAFGISNTAFVLCF 408

Query:   397 SALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFXXXXXXXXXXX 456
             S++ + + QFK +PF +L   +CP G EG++ +   S     S V  F            
Sbjct:   409 SSVAEILAQFKILPFSVLLANMCPGGCEGSITSFLASTLCLSSVVSGFTGVGMANMIGIT 468

Query:   457 XXXFDNLLLGISIQALCTFIPIAFLFLIP 485
                + NL  GI IQ+L   +P+ F+  +P
Sbjct:   469 SKNYSNLPAGILIQSLAALVPLWFIHYVP 497

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q55721 slr0642 "Folate-biopterin transporter" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 291 (107.5 bits), Expect = 4.6e-42, Sum P(2) = 4.6e-42
 Identities = 70/210 (33%), Positives = 98/210 (46%)

Query:   278 KAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGW 337
             KA I  ++ A RQ  IL P  + F    A P+  +  FY+ T  L  E  FLG  R+V  
Sbjct:   231 KAQIKLVWQAVRQKTILLPTLFIFFWQ-ATPSAESAFFYFTTNELGFEPKFLGRVRLVTS 289

Query:   338 VGLMLGTYTYNGYXXXXXXXXXXXXTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGS 397
             V  ++G   Y  +            + V  S+L    ++L++  N  +GI D    L  S
Sbjct:   290 VAGLIGVGLYQRFLKTLPFRVIMGWSTVISSLLGLTTLILITHANRAMGIDDHWFSLGDS 349

Query:   398 ALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFXXXXXXXXXXXX 457
              ++    Q  FMP L+L+ +LCPPGIE TLFAL MS+ N    +                
Sbjct:   350 IILTVTGQIAFMPVLVLAARLCPPGIEATLFALLMSVMNLAGVLSFEVGSLLTHWLGVTE 409

Query:   458 XXFDNLLLGISIQALCTFIPIAFLFLIPKG 487
               FDNL L + I  L T +P+ FL L+P G
Sbjct:   410 TQFDNLALLVIITNLSTLLPLPFLGLLPAG 439

GO:0008517 "folic acid transporter activity" evidence=IDA

GO:0015231 "5-formyltetrahydrofolate transporter activity" evidence=IMP;IDA

GO:0015350 "methotrexate transporter activity" evidence=IDA

GO:0015884 "folic acid transport" evidence=IDA

GO:0015885 "5-formyltetrahydrofolate transport" evidence=IMP;IDA

GO:0051958 "methotrexate transport" evidence=IDA

TAIR|locus:2017814 AT1G79710 "AT1G79710" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 67/218 (30%), Positives = 110/218 (50%)

Query:   283 SLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILN---LEASFLGTARVVGWVG 339
             +++  F+  E+ RP  +  L+     ++   MFY+ T+  +        +G+    G +G
Sbjct:   255 AIWKTFQYGEVWRPCLFMLLSAAVSLHIHEGMFYWYTDSKDGPSFSKEAVGSIMSFGAIG 314

Query:   340 LMLGTYTYNGYXXXXXXXXXXXXTQVGLSILS-FLDIVLVSRMNLTVGISDKTMVLYGSA 398
              ++G   Y  +              + LS+LS FLD++LV R+NL +G+ D   ++    
Sbjct:   315 SLVGILLYQNFLKNFPFRNVVFWA-LSLSVLSGFLDLILVLRINLKLGLPDYFFIVVDEF 373

Query:   399 LVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFXXXXXXXXXXXXX 458
             +   +++ K++P L+LS +LCP G+EGT FAL MSI + G  V S+              
Sbjct:   374 VSHMISRIKWLPLLVLSSKLCPAGMEGTFFALLMSIEHIGHLVSSWGGGVLLHALKVTRT 433

Query:   459 XFDNLLLGISIQALCTFIPIAFLFLIPK---GATGVPA 493
              FDNL L I I++L   IPI  +FLIP     +T +PA
Sbjct:   434 QFDNLWLVIVIRSLLRVIPIGLVFLIPNVDSNSTILPA 471

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2179285 AT5G25050 "AT5G25050" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 58/208 (27%), Positives = 101/208 (48%)

Query:   283 SLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILN--LEAS-FLGTARVVGWVG 339
             +++   +  ++ RP  + +++     N+   +FY+ T+  +  L A   +G    +G +G
Sbjct:   251 AMWRTMKCSDVWRPSLYMYISLTLGLNIHEGLFYWFTDSKDGPLFAQETVGFILSIGSIG 310

Query:   340 LMLGTYTYNGYXXXXXXXXXXXXTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSAL 399
              +L    Y               TQ+  ++   LD++LV R+NL  G+ D   ++    +
Sbjct:   311 SILAATLYQLVLKDHPFRGLCLWTQLLFALSGMLDLILVFRLNLKFGLPDYLFIVVDEIV 370

Query:   400 VDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFXXXXXXXXXXXXXX 459
                + + K+MP L+L+ +LCP GIEGT FAL MSI N G    S+               
Sbjct:   371 SQMIGRLKWMPLLVLTSKLCPHGIEGTFFALLMSIDNAGLMTSSWLGGIMLHVLKVTRTE 430

Query:   460 FDNLLLGISIQALCTFIPIAFLFLIPKG 487
             F NL L + ++ +   +P+ FLFL+PKG
Sbjct:   431 FGNLWLAVLVRNVMRLLPLCFLFLVPKG 458

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2183810 AT5G10820 "AT5G10820" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 5.0e-30, Sum P(3) = 5.0e-30
 Identities = 60/214 (28%), Positives = 99/214 (46%)

Query:   277 LKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVM--FYYQTEILNLEA---SFLGT 331
             L  A+  +    + PE+ +P  + F++ +A+ N+ST    FY+ T+     A    F+G 
Sbjct:   260 LGVAVKGMCKTVKYPEVWKPSLYMFIS-LAL-NISTHEGHFYWYTDPTAGPAFSQEFVGI 317

Query:   332 ARVVGWVGLMLGTYTYNGYXXXXXXXXXXXXTQVGLSILSFLDIVLVSRMNLTVGISDKT 391
                VG +  M G   Y+               Q+       LD+V + R NLT+GI D  
Sbjct:   318 IYAVGALASMFGVLIYHKKLKGYSFRNILFFAQLLYVFSGMLDLVFIKRWNLTLGIPDSL 377

Query:   392 MVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFXXXXXX 451
              V+   +    +++ +++P ++LS +LCP GIEGT FA  M I +FG     +       
Sbjct:   378 FVITEESFTKMISKIRWIPMVVLSTRLCPLGIEGTFFAFLMCIDSFGQLASKWGGGFVLH 437

Query:   452 XXXXXXXXFDNLLLGISIQALCTFIPIAFLFLIP 485
                     F NL L I I+ +   + + F+FL+P
Sbjct:   438 AFGVTRHDFGNLWLVILIRNILRLVTVCFVFLVP 471

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GENEDB_PFALCIPARUM|PF11_0172 PF11_0172 "folate/biopterin transporter, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 211 (79.3 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
 Identities = 51/195 (26%), Positives = 87/195 (44%)

Query:   291 PEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGY 350
             P  L P  + F+ +++ P+     F++ T  L    SF+GT R+   +  ++G   Y  +
Sbjct:   246 PIFLGPFLYIFV-YMSGPDYDDAFFFFCTNKLGFRPSFMGTLRLTYGIASLIGIIIYRVF 304

Query:   351 XXXXXXXXXXXXTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMP 410
                         T +    +    I+L   +N  +GIS++  VL G  L++A+ + + +P
Sbjct:   305 LKNCSLRKTLIITTLVSFPIYISPIILTEHINKFLGISNELFVLSGGFLIEAITEIQLLP 364

Query:   411 FLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFXXXXXXXXXXXXXXFDNLLLGISIQ 470
               IL+  +C PG+E ++FA  +S+ N GS                    FDNL L I   
Sbjct:   365 LFILTANICQPGLEASVFATILSVKNLGSLTKKGTSSFITYLMKIDSYNFDNLSLYI--- 421

Query:   471 ALCTFIPIAFLFLIP 485
               C F  +  L L+P
Sbjct:   422 LTCGFFLLFSLTLVP 436

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RWQ5	FBT4_ARATH	No assigned EC number	0.646	0.9716	0.9755	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	493
pfam03092	425	pfam03092, BT1, BT1 family	2e-82
TIGR00788	468	TIGR00788, fbt, folate/biopterin transporter	1e-48
TIGR00788	468	TIGR00788, fbt, folate/biopterin transporter	6e-20
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-07

>gnl|CDD|111933 pfam03092, BT1, BT1 family

 Score =  261 bits (668), Expect = 2e-82
 Identities = 149/471 (31%), Positives = 204/471 (43%), Gaps = 67/471 (14%)

Query: 23  QGF-RSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIP 81
           QG        +  + LKD+L   P+  Q +S +A  PW IKP  G+LSD   + G +R P
Sbjct: 1   QGVAGGLSRLSTQFMLKDRLGIDPARYQRLSGLATLPWVIKPFTGVLSDGFALFGYRRRP 60

Query: 82  YLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERA 141
           YL +S +L     L  GL     SS       +   +LG A+ DV+ DA+ +E  + E  
Sbjct: 61  YLALSGLLGGAFALSYGLLPAKESSAAVAAAFIFLSSLGKALVDVLSDALYSERGRQEPL 120

Query: 142 AFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRV 201
           A    L S  W   A GGI GS+L G  L   +    FL+   L   QLL+C       V
Sbjct: 121 A-GPSLVSWIWGCSAVGGIIGSVLSGPLLDTFKPQISFLVTAAL---QLLTC-------V 169

Query: 202 STKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQ 261
              VLKE                                                     
Sbjct: 170 DAAVLKEEEVLG------------------------------------------------ 181

Query: 262 IPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRP-MAWFFLAHVAVPNLSTVMFYYQTE 320
           +     P +       +  I   + AFR PEIL P + W       +      MFYYQT 
Sbjct: 182 LGRPPVPCL---LGLNREVISRNWKAFRYPEILAPTLTWISFWAAPLVIAKADMFYYQTN 238

Query: 321 IL---NLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVL 377
            L   N   SF GT +V+G +  +LG   YN +LK+   R    +T V   +    D++L
Sbjct: 239 ELGGPNFSYSFYGTVKVIGSIAGLLGVTLYNRFLKKHPYRLTFGVTTVLQVLSGLFDLIL 298

Query: 378 VSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNF 437
           V R N  +GISD   +L  S +++ +   KFMPFL+L  +LCP G E T+FAL  SI+N 
Sbjct: 299 VKRWNRYLGISDHVYILGDSIILEVLYMLKFMPFLVLLARLCPRGSESTVFALLASIANL 358

Query: 438 GSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKGA 488
           G  V S  GA L   L ++   F NL L + I +LCT +P+  L L+P  A
Sbjct: 359 GQIVSSSLGALLMEYLGVTEDQFSNLPLLLLIGSLCTLLPLPLLGLLPPSA 409

Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters. One such protein, previously termed (and is still annotated as) ORFG, was shown to encode a biopterin transport protein using null mutants, thus being subsequently renamed BT1. The significant similarity of ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative transmembrane protein and another member of this family) was previously noted. This family also contains five putative Arabidopsis thaliana proteins of unknown function. In addition, it also contains two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). Length = 425

>gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter

 Score =  173 bits (441), Expect = 1e-48
 Identities = 75/210 (35%), Positives = 118/210 (56%)

Query: 276 SLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVV 335
           ++K  I  L  A +  EI +P+ + FL++  +P  S  +F   T+ L    SF G ++VV
Sbjct: 237 NVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVV 296

Query: 336 GWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLY 395
           G +G + G   Y+ +LK    R +  +T +  ++ S  D++LV R NL  GISD+  VL 
Sbjct: 297 GNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLG 356

Query: 396 GSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI 455
            S + + + Q KFMPFL+L  +LCP G E ++FAL  SI + GS+V  F G  L  ++ I
Sbjct: 357 DSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGI 416

Query: 456 SSGSFDNLLLGISIQALCTFIPIAFLFLIP 485
           +  + +NL L I   +L   +P+  L L+P
Sbjct: 417 TCDNSNNLWLLILGHSLAPLLPLPLLHLLP 446

The Folate-Biopterin Transporter (FBT) Family (TC 2.A.71)The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity [Cell envelope, Other]. Length = 468

>gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter

 Score = 92.2 bits (229), Expect = 6e-20
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 3/188 (1%)

Query: 13  LWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCI 72
           L +   + F +G    +   +S  L D L    +  Q +  ++   W++KP  G++SD  
Sbjct: 28  LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTF 87

Query: 73  PIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMI 132
           P+ G  +  YLV+S +L     ++ GL     SS       +    L  A+ DV+VD++ 
Sbjct: 88  PLFGYTKRWYLVLSGLLG--SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLY 145

Query: 133 AEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLS 192
           +E  +   +A    L S  W A A GG+  SLLGG  L       +FL+   L  +QL  
Sbjct: 146 SERIRESPSA-GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV 204

Query: 193 CGLVKENR 200
             L KE R
Sbjct: 205 SNLSKERR 212

The Folate-Biopterin Transporter (FBT) Family (TC 2.A.71)The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity [Cell envelope, Other]. Length = 468

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 46/175 (26%), Positives = 70/175 (40%), Gaps = 14/175 (8%)

Query: 16  ICLIYFTQGF-RSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIP 73
           + L  F  G  RS +  A+   L + L  SP+    +       +++ +PL G LSD   
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF- 59

Query: 74  IKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIA 133
             GR+R+       ++ L+ + +  L   F SS W L+VL   Q LG         A+IA
Sbjct: 60  --GRRRV------LLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIA 111

Query: 134 EAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAI 188
           +    E    A     L       G   G LLGG   +       FL+  +L  +
Sbjct: 112 DWFPPEERGRA---LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALL 163

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 13/180 (7%)

Query: 13  LWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDC 71
           L L+ L +F  G    + +     L + L  S S +  + +     +++   L G LSD 
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 72  IPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAM 131
               GR+R+       +L L+ + +  L   F SS W L+V      LG         A+
Sbjct: 61  F---GRRRV------LLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAAL 111

Query: 132 IAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLL 191
           IAE    +    A     L       G + G LLGG    ++    +FL+  +L  +  L
Sbjct: 112 IAEWFPPKERGRA---LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL 168

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	493
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	100.0
TIGR00788	468	fbt folate/biopterin transporter. The only functio	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK11010	491	ampG muropeptide transporter; Validated	99.98
PRK11902	402	ampG muropeptide transporter; Reviewed	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.96
PRK11663	434	regulatory protein UhpC; Provisional	99.96
TIGR00891	405	2A0112 putative sialic acid transporter.	99.96
PRK12307	426	putative sialic acid transporter; Provisional	99.96
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.96
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.96
TIGR00900	365	2A0121 H+ Antiporter protein.	99.96
PRK10504	471	putative transporter; Provisional	99.96
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.96
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.96
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.95
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.95
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.95
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.95
TIGR00901	356	2A0125 AmpG-related permease.	99.95
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.95
PRK10489	417	enterobactin exporter EntS; Provisional	99.95
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.95
PRK10091	382	MFS transport protein AraJ; Provisional	99.95
TIGR00893	399	2A0114 d-galactonate transporter.	99.95
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.95
PRK10642	490	proline/glycine betaine transporter; Provisional	99.95
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.95
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.95
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.95
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.95
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.94
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.94
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.94
PRK09705	393	cynX putative cyanate transporter; Provisional	99.94
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.94
PRK09952	438	shikimate transporter; Provisional	99.94
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.94
PRK12382	392	putative transporter; Provisional	99.94
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.94
PRK03893	496	putative sialic acid transporter; Provisional	99.94
TIGR00895	398	2A0115 benzoate transport.	99.94
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.94
PRK03699	394	putative transporter; Provisional	99.94
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.94
PRK15011	393	sugar efflux transporter B; Provisional	99.94
PRK10054	395	putative transporter; Provisional	99.94
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.94
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.94
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.93
PRK09669	444	putative symporter YagG; Provisional	99.93
PRK09874	408	drug efflux system protein MdtG; Provisional	99.93
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.93
PRK03633	381	putative MFS family transporter protein; Provision	99.93
PRK11043	401	putative transporter; Provisional	99.93
COG2211	467	MelB Na+/melibiose symporter and related transport	99.93
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.93
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.93
PRK15075	434	citrate-proton symporter; Provisional	99.93
PRK10429	473	melibiose:sodium symporter; Provisional	99.93
PRK10133	438	L-fucose transporter; Provisional	99.93
PRK09528	420	lacY galactoside permease; Reviewed	99.92
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.92
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.91
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.91
TIGR00898	505	2A0119 cation transport protein.	99.91
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.91
PF13347	428	MFS_2: MFS/sugar transport protein	99.91
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.91
PRK09848	448	glucuronide transporter; Provisional	99.91
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.91
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.91
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.91
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.9
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.9
PRK11462	460	putative transporter; Provisional	99.9
PLN00028	476	nitrate transmembrane transporter; Provisional	99.9
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.9
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.89
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.89
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.88
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.88
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.87
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.87
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.87
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.86
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.86
KOG0569	485	consensus Permease of the major facilitator superf	99.86
KOG2532	466	consensus Permease of the major facilitator superf	99.85
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.83
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.83
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.82
TIGR00805	633	oat sodium-independent organic anion transporter.	99.81
KOG2533	495	consensus Permease of the major facilitator superf	99.8
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	99.78
KOG2615	451	consensus Permease of the major facilitator superf	99.77
KOG0254	513	consensus Predicted transporter (major facilitator	99.77
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.77
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.76
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.74
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.74
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.74
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	99.73
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.72
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.7
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.69
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.68
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.64
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.63
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.6
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.59
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.53
PTZ00207	591	hypothetical protein; Provisional	99.51
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.37
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.36
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.29
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.28
PRK15011	393	sugar efflux transporter B; Provisional	99.28
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.27
PRK10489	417	enterobactin exporter EntS; Provisional	99.25
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.23
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.23
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.22
PRK10642	490	proline/glycine betaine transporter; Provisional	99.21
PRK03545	390	putative arabinose transporter; Provisional	99.2
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.2
KOG2563	480	consensus Permease of the major facilitator superf	99.18
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.16
PRK11663	434	regulatory protein UhpC; Provisional	99.16
KOG3626	735	consensus Organic anion transporter [Secondary met	99.15
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.15
PRK09528	420	lacY galactoside permease; Reviewed	99.14
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.14
PRK09705	393	cynX putative cyanate transporter; Provisional	99.14
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.13
PRK03699	394	putative transporter; Provisional	99.13
TIGR00893	399	2A0114 d-galactonate transporter.	99.13
PRK05122	399	major facilitator superfamily transporter; Provisi	99.12
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.12
PRK11010	491	ampG muropeptide transporter; Validated	99.11
PRK03633	381	putative MFS family transporter protein; Provision	99.1
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.09
PRK09952	438	shikimate transporter; Provisional	99.08
PRK03893	496	putative sialic acid transporter; Provisional	99.08
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.08
PRK09874	408	drug efflux system protein MdtG; Provisional	99.08
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.06
KOG3762	618	consensus Predicted transporter [General function	99.04
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.02
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.01
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.99
PRK12382	392	putative transporter; Provisional	98.99
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.96
TIGR00900	365	2A0121 H+ Antiporter protein.	98.96
PRK10504	471	putative transporter; Provisional	98.96
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.95
PRK11902	402	ampG muropeptide transporter; Reviewed	98.95
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.95
TIGR00891	405	2A0112 putative sialic acid transporter.	98.94
PLN00028	476	nitrate transmembrane transporter; Provisional	98.94
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.91
PRK10054	395	putative transporter; Provisional	98.91
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.89
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.89
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.88
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.84
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.84
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.84
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.83
PRK10091	382	MFS transport protein AraJ; Provisional	98.82
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.78
PRK15075	434	citrate-proton symporter; Provisional	98.78
PRK12307	426	putative sialic acid transporter; Provisional	98.77
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.76
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.76
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.76
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.76
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.75
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.75
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.74
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.73
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.73
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.73
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.69
TIGR00895	398	2A0115 benzoate transport.	98.67
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.67
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.67
PRK09848	448	glucuronide transporter; Provisional	98.66
TIGR00898	505	2A0119 cation transport protein.	98.66
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.65
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.65
PRK11043	401	putative transporter; Provisional	98.59
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.58
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.57
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.56
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.55
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.55
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.55
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.54
PRK10133	438	L-fucose transporter; Provisional	98.52
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.52
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.52
PRK09669	444	putative symporter YagG; Provisional	98.51
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.51
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.49
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.48
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.47
PF13347	428	MFS_2: MFS/sugar transport protein	98.46
KOG2532	466	consensus Permease of the major facilitator superf	98.45
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.45
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.4
PRK10429	473	melibiose:sodium symporter; Provisional	98.39
TIGR00901	356	2A0125 AmpG-related permease.	98.39
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.39
KOG0637	498	consensus Sucrose transporter and related proteins	98.39
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.33
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.32
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.28
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.28
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.28
KOG0569	485	consensus Permease of the major facilitator superf	98.21
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.17
COG0477	338	ProP Permeases of the major facilitator superfamil	98.16
KOG2615	451	consensus Permease of the major facilitator superf	98.15
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.13
TIGR00805	633	oat sodium-independent organic anion transporter.	98.1
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.0
PRK11462	460	putative transporter; Provisional	98.0
COG2211	467	MelB Na+/melibiose symporter and related transport	97.82
KOG3762	618	consensus Predicted transporter [General function	97.78
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.75
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.73
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.7
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.67
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.62
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.57
KOG2533	495	consensus Permease of the major facilitator superf	97.57
KOG0254	513	consensus Predicted transporter (major facilitator	97.49
PTZ00207	591	hypothetical protein; Provisional	97.46
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.44
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.29
PF12832	77	MFS_1_like: MFS_1 like family	97.29
KOG2563	480	consensus Permease of the major facilitator superf	97.27
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.23
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.17
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.11
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.01
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.94
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.89
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.87
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.68
PF12832	77	MFS_1_like: MFS_1 like family	96.66
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.65
COG3202	509	ATP/ADP translocase [Energy production and convers	96.44
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.04
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	95.99
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.99
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.95
KOG3810	433	consensus Micronutrient transporters (folate trans	95.86
PRK03612	521	spermidine synthase; Provisional	95.84
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.92
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	94.89
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	94.46
KOG2816	463	consensus Predicted transporter ADD1 (major facili	94.27
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.0
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.71
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	92.21
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	91.98
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	91.21
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	90.38
COG0477	338	ProP Permeases of the major facilitator superfamil	88.94
KOG3880	409	consensus Predicted small molecule transporter inv	88.71
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	87.22
KOG3626	735	consensus Organic anion transporter [Secondary met	83.81
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	83.77
KOG0637	498	consensus Sucrose transporter and related proteins	83.67
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	80.77

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=100.00  E-value=1e-41  Score=352.24  Aligned_cols=412  Identities=37%  Similarity=0.592  Sum_probs=347.1

Q ss_pred             HhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 011112           23 QGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNA  101 (493)
Q Consensus        23 ~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~  101 (493)
                      ||+.. +...++.+++++++|+++++.+.+.++..+||.+||++|.++|.+|++|+|||+|++++.++..++...++..+
T Consensus         1 qG~~~~l~~~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~   80 (433)
T PF03092_consen    1 QGFAGGLSRLAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP   80 (433)
T ss_pred             CChhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence            45554 78888999999999999999999999999999999999999999999999999999999999888777777776


Q ss_pred             cchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Q 011112          102 FFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLL  181 (493)
Q Consensus       102 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~  181 (493)
                      ..+.+.....++.++..+|.+.+|++.|+++.|..++||.+ ||..++..+.+..+|.+++..++|.+.+..+++..|.+
T Consensus        81 ~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i  159 (433)
T PF03092_consen   81 ASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLI  159 (433)
T ss_pred             cccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehH
Confidence            54456666777888899999999999999999999987755 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhcc
Q 011112          182 FTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQ  261 (493)
Q Consensus       182 ~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (493)
                      .+.++.+..+..++++|+++... +.+.....+             +     +        .+.                
T Consensus       160 ~~~~~~l~~~~~~~~~~e~~~~~-~~~~~~~~~-------------~-----~--------~~~----------------  196 (433)
T PF03092_consen  160 SAALPLLMLIVALFLLEERKVRP-ADEVFSFGK-------------E-----E--------VPC----------------  196 (433)
T ss_pred             HHHHHHHHHHHHHHhhhhccccc-cchhhcccc-------------c-----c--------cch----------------
Confidence            88887777766555544322211 000000000             0     0        000                


Q ss_pred             CCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHH-HHHHHHhcccCCCcceeeeeeccCC---CCHHHHHHHHHHHH
Q 011112          262 IPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMA-WFFLAHVAVPNLSTVMFYYQTEILN---LEASFLGTARVVGW  337 (493)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~g---~s~~~~gl~~~~~~  337 (493)
                                 .....|+..+++|+.+++|.++...+ +.++.............+|..+.++   +|+...|.+..++.
T Consensus       197 -----------~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~  265 (433)
T PF03092_consen  197 -----------LFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGS  265 (433)
T ss_pred             -----------hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHH
Confidence                       00135777888999999999998877 5555343333333336677777777   99999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhh
Q 011112          338 VGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQ  417 (493)
Q Consensus       338 ~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  417 (493)
                      ++.++|..++.++.++.+.|+++....++..+.++..+.++.++|...|+++.+++++...+...++++.++|...+++|
T Consensus       266 ~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~  345 (433)
T PF03092_consen  266 IASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAAR  345 (433)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888777888889988899999999999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhcccCCCC
Q 011112          418 LCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKGAT  489 (493)
Q Consensus       418 ~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  489 (493)
                      +||++.|||.+++..++.|+|..++..++..+.+.+|+++.+|++++.++++++++.++|+.++++||++++
T Consensus       346 lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  346 LCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             HCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence            999999999999999999999999999999999999998889999999999999999999999988887654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00788 fbt folate/biopterin transporter

Probab=100.00  E-value=7.5e-40  Score=342.43  Aligned_cols=424  Identities=31%  Similarity=0.488  Sum_probs=335.2

Q ss_pred             hchhHHH-HHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccccCCCCchhHHHHH
Q 011112            8 FGVSFLW-LICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         8 ~~~~~~~-~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      ++++..+ ++...|+.+|+.++...++.+++++++|+|+++++.+.++..+||.+||+||+++||+|++|+|||+|++++
T Consensus        22 ~~~~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~  101 (468)
T TIGR00788        22 FHPRVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLS  101 (468)
T ss_pred             CCcchHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHH
Confidence            4566665 445579999998888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSL-VPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        87 ~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      .++.. ++...++..+   +......+.+++.+++.+.+|++.|+++.|..+ |+++.++..+++.+...++|.++|+.+
T Consensus       102 ~~l~~~~~~~~l~~~~---~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l  177 (468)
T TIGR00788       102 GLLGSAILYGLLPGKV---SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLL  177 (468)
T ss_pred             HHHHHHHHHHhccccc---chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHH
Confidence            87763 4333333222   234444557889999999999999999999998 456777778888888889999999999


Q ss_pred             HHHhhccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhh
Q 011112          166 GGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKK  245 (493)
Q Consensus       166 ~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (493)
                      +|.+.++++||.+|++.+.+.++..+..+++||+++....+.     ++++            . .. ..      ..+.
T Consensus       178 ~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~-----~~~~------------~-~~-~~------~~~~  232 (468)
T TIGR00788       178 GGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRI-----GTYL------------E-MN-MA------LLTL  232 (468)
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccc-----cccc------------h-hh-hh------hhhh
Confidence            999999999999999988877766555667888652110000     0000            0 00 00      0000


Q ss_pred             hhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCC
Q 011112          246 NKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLE  325 (493)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s  325 (493)
                                                ...+..++..+++++.+++|.++..+++.++.+...++....++++.++.+|+|
T Consensus       233 --------------------------~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s  286 (468)
T TIGR00788       233 --------------------------GVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGG  286 (468)
T ss_pred             --------------------------hHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCC
Confidence                                      000123444556777788999988777766633344555555555667789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHH
Q 011112          326 ASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQ  405 (493)
Q Consensus       326 ~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~  405 (493)
                      +.+.|+...+.+++.+++....+++.+|.+.|+.+.++.++..++.+....+...++...+.++.+++++...+.++..+
T Consensus       287 ~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g  366 (468)
T TIGR00788       287 PSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQ  366 (468)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHH
Confidence            99999998888899999999999999999999999999998887765544455566655556666667777788888888


Q ss_pred             hhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhccc
Q 011112          406 FKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIP  485 (493)
Q Consensus       406 ~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  485 (493)
                      +.++|.++++++.+|++.+|+.+++++++.++|..+++.+++.+.+.+|...++|++++..+.++.++.++++.++.++|
T Consensus       367 ~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP  446 (468)
T TIGR00788       367 LKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLP  446 (468)
T ss_pred             HHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             C
Q 011112          486 K  486 (493)
Q Consensus       486 ~  486 (493)
                      +
T Consensus       447 ~  447 (468)
T TIGR00788       447 R  447 (468)
T ss_pred             C
Confidence            5

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.6e-30  Score=254.63  Aligned_cols=370  Identities=18%  Similarity=0.167  Sum_probs=282.6

Q ss_pred             hhhchhHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            6 NVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         6 ~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      +...+..++.+....|..+...++-..+.|-+.+|+|+|..+.|+.+++|.+++.+ .|+...+.||+     .||+.++
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-----~Rr~lLl   82 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-----ERRRLLL   82 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----chHHHHH
Confidence            44567777778888888888776556666777999999999999999999999988 79999999995     6888999


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL  164 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~  164 (493)
                      ....+++++.+++++++    +++.+.+.|++.++..+...+...++..++.   |+++|++++++...+.+++.++|..
T Consensus        83 ~~l~lFi~~n~l~alAp----~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv---pp~~~~~Aiaiv~~G~tlA~v~GvP  155 (394)
T COG2814          83 GLLALFIVSNLLSALAP----SFAVLLLARALAGLAHGVFWSIAAALAARLV---PPGKRGRALALVFTGLTLATVLGVP  155 (394)
T ss_pred             HHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CccchhhHHHHHHHHHHHHHHHhcc
Confidence            99999999999999997    6889999999999999999999999999999   5699999999999999999999999


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhh
Q 011112          165 LGGYALTNIEIDRIFLLFTVLPAIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKR  243 (493)
Q Consensus       165 i~g~l~~~~gw~~~f~~~~~~~~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (493)
                      +|.++.+.+|||+.|++.++++++..+. +..+| +++..+.                            +         
T Consensus       156 LGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~----------------------------~---------  197 (394)
T COG2814         156 LGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP-PSEISGS----------------------------L---------  197 (394)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCC----------------------------C---------
Confidence            9999999999999999999888777654 45678 1111100                            0         


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCC
Q 011112          244 KKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILN  323 (493)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g  323 (493)
                       +       .                      +.    ++..+.+|+|+++...+..++........++...+++++..|
T Consensus       198 -~-------~----------------------~~----~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g  243 (394)
T COG2814         198 -P-------G----------------------PL----RTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAG  243 (394)
T ss_pred             -C-------c----------------------ch----hHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccC
Confidence             0       0                      11    234567899999887766666454444455555667788899


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHH
Q 011112          324 LEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAV  403 (493)
Q Consensus       324 ~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~  403 (493)
                      +|.+..++.....+++.++|+.++||+.|| +.|+.+.....++.+..+. +....        .+.+..+....+    
T Consensus       244 ~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~-l~~~~--------~~~~~~~~~~~~----  309 (394)
T COG2814         244 FSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLA-LTFTG--------ASPALALALLFL----  309 (394)
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHH-HHHhc--------chHHHHHHHHHH----
Confidence            999999999999999999999999999999 8888887776666654332 11111        111111111111    


Q ss_pred             HHhhHhHH-HHHHhhcCC--CCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhh
Q 011112          404 NQFKFMPF-LILSGQLCP--PGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAF  480 (493)
Q Consensus       404 ~~~~~~~~-~~~~~~~~p--~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (493)
                      -++...|. +.+..+..+  |+.+..+.+++.+..|+|...|..+||.+.|++|+..        .....++..+++.+.
T Consensus       310 wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~--------~~~~~a~l~~~a~~~  381 (394)
T COG2814         310 WGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAA--------TGWVGAALLLLALLL  381 (394)
T ss_pred             HHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH--------HHHHHHHHHHHHHHH
Confidence            22233332 344444444  7889999999999999999999999999999987643        234455555555555


Q ss_pred             h
Q 011112          481 L  481 (493)
Q Consensus       481 ~  481 (493)
                      .
T Consensus       382 ~  382 (394)
T COG2814         382 A  382 (394)
T ss_pred             H
Confidence            4

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.98  E-value=2.3e-29  Score=265.21  Aligned_cols=393  Identities=14%  Similarity=0.122  Sum_probs=270.7

Q ss_pred             hhhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccccC-CCCchhHH
Q 011112            6 NVFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIK-GRKRIPYL   83 (493)
Q Consensus         6 ~~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~-g~~rr~~i   83 (493)
                      +.+++++.+.+...+|.+|+.. +....++.+++ +.|.|.+++|.+ +....++..+|+||+++||+... ..|||+++
T Consensus         7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~l   84 (491)
T PRK11010          7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWL   84 (491)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHcccccCCCCchHHH
Confidence            4467777787889999999975 66666666655 579999999985 66777887899999999996332 23566788


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGS  163 (493)
Q Consensus        84 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~  163 (493)
                      +.+.+..+++...+++.+. ..+.+.+.+.+++.+++.+.++++.++++.|..+   +++|+++.++...+..+|.++++
T Consensus        85 l~~~i~~~~~~~~~a~~~~-~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~---~~~rg~~~~i~~~g~~lG~llg~  160 (491)
T PRK11010         85 LATQLLLLVAIAAMGFLEP-GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLP---AEERGAGAAISVLGYRLAMLVSG  160 (491)
T ss_pred             HHHHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---hhhhHHHHHHHHHHHHHHHHHHH
Confidence            8888888888777766532 2356677788889999999999999999999984   58899999999999999999999


Q ss_pred             HHHHHhhc-cccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhh
Q 011112          164 LLGGYALT-NIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKK  242 (493)
Q Consensus       164 ~i~g~l~~-~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (493)
                      .+++++.+ ..|||.+|++.+++.++..+..+++||+++..+.        +                   ++      .
T Consensus       161 ~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~--------~-------------------~~------~  207 (491)
T PRK11010        161 GLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPV--------P-------------------KT------L  207 (491)
T ss_pred             HHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc--------c-------------------cc------h
Confidence            99999998 5799999999887766665555557775432100        0                   00      0


Q ss_pred             hhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccC
Q 011112          243 RKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEIL  322 (493)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  322 (493)
                        +       .                      +..   .++.+.+++|+.+...+..++............++|+.+..
T Consensus       208 --~-------~----------------------~~~---~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~  253 (491)
T PRK11010        208 --E-------Q----------------------AVV---APLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGV  253 (491)
T ss_pred             --h-------h----------------------hHH---HHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              0       0                      001   12333455666655443333322221111222344555568


Q ss_pred             CCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHH
Q 011112          323 NLEASFLGTAR-VVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVD  401 (493)
Q Consensus       323 g~s~~~~gl~~-~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~  401 (493)
                      |+|..+.|... ..+.++.+++.++++++.||+++|+.+..+.++..+..+....+...      .++.........+..
T Consensus       254 G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~------~~~~~~l~~~~~l~~  327 (491)
T PRK11010        254 GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT------DKNLYSMGAAVFFEN  327 (491)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHH
Confidence            99999999985 57778999999999999999999888777666555433221111110      011111111122333


Q ss_pred             HHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhh
Q 011112          402 AVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFL  481 (493)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (493)
                      .+.++...+..++.++.++++.+++.+|+.++..++|+.+++.+.|.+.|.+|+        ...+.+.+++++++.+..
T Consensus       328 ~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~--------~~~f~~~~~~~l~~l~~~  399 (491)
T PRK11010        328 LCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGW--------PTFYLFSVAAAVPGLLLL  399 (491)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--------HHHHHHHHHHHHHHHHHH
Confidence            344445555678889999999999999999999999999888899999998764        223445555555555554


Q ss_pred             hccc
Q 011112          482 FLIP  485 (493)
Q Consensus       482 ~~l~  485 (493)
                      .+++
T Consensus       400 ~~~~  403 (491)
T PRK11010        400 LVCR  403 (491)
T ss_pred             HHHH
Confidence            4444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.97  E-value=9.1e-29  Score=254.55  Aligned_cols=383  Identities=15%  Similarity=0.135  Sum_probs=260.8

Q ss_pred             HHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccccCC-CCchhHHHHHHHHHHHH
Q 011112           16 ICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKG-RKRIPYLVISTVLSLVP   93 (493)
Q Consensus        16 ~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g-~~rr~~ii~~~~l~~~~   93 (493)
                      +...|+.||+.. +....+|.++++ .|+|.+++|++ +....++.++|+||+++||++..+ .|||++++.+.++.+++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~-~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFF-SLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHH-HHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            457899999985 888889999886 69999999986 556667888999999999985432 25667899998888888


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 011112           94 WLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN-  172 (493)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~-  172 (493)
                      ...+++.+.. .+.+.+.+..++.+++.+.++++.++++.|..+   +++|+++.++...+..+|.++++.+++.+.+. 
T Consensus        82 ~~~l~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~---~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~  157 (402)
T PRK11902         82 IAAMAFCPPH-AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLH---PEERGAGAAVKVLGYRLAMLVSGGLALWLADRV  157 (402)
T ss_pred             HHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence            8877776432 245566666667788899999999999999984   58899999999999999999999999999885 


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhh
Q 011112          173 IEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKK  252 (493)
Q Consensus       173 ~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (493)
                      .|||..|++.+++.++..+..++.||++++++.        +                   ++        .+       
T Consensus       158 ~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~--------~-------------------~~--------~~-------  195 (402)
T PRK11902        158 LGWGNTYLLMAGLMLAGALTTLWAPEPEVPARP--------P-------------------RS--------LG-------  195 (402)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc--------c-------------------ch--------hH-------
Confidence            599999999887765554444566765433210        0                   00        00       


Q ss_pred             hhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHH
Q 011112          253 RMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTA  332 (493)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~  332 (493)
                      .                      +.+   +++.+.+|||.++..++..++............+++..++.|++++++|++
T Consensus       196 ~----------------------~~~---~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~  250 (402)
T PRK11902        196 E----------------------AVV---GPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIV  250 (402)
T ss_pred             H----------------------HHH---HHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            0                      111   133456788887665544333222111111112334556689999999998


Q ss_pred             H-HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHH
Q 011112          333 R-VVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPF  411 (493)
Q Consensus       333 ~-~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~  411 (493)
                      . ..+.++.+++.++.+++.||+++|+.+..+.++..+..+........      .++.+.......+..++.++...+.
T Consensus       251 ~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~  324 (402)
T PRK11902        251 NKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT------PKHLWTMALAIGIENLCGGMGTAAF  324 (402)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 44556788999999999999999988877666555443222111110      0111211111222333444555555


Q ss_pred             HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhccc
Q 011112          412 LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIP  485 (493)
Q Consensus       412 ~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  485 (493)
                      .+..+.+++++..++.++++++..++++..++.++|.+.|.+|+.        ..+.+.+++++++.+.++..+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~--------~~f~~~~~~~~~~~~~~~~~~  390 (402)
T PRK11902        325 VALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWP--------GFYLMTVVIALPGLALLWLMR  390 (402)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--------HHHHHHHHHHHHHHHHHHHHh
Confidence            666777777777788889988888899887788999999998753        344555566666655554444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=6.4e-28  Score=247.20  Aligned_cols=354  Identities=16%  Similarity=0.105  Sum_probs=239.9

Q ss_pred             hhhchhHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            6 NVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         6 ~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      |..+|...+.+.+..+..........++.|.+++++|.|+++.|+..+.+.+++.+ ++++|+++||+     +||+.+.
T Consensus         4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~   78 (390)
T PRK03545          4 RKVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-----ERRKLLI   78 (390)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----ChHHHHH
Confidence            33455545544444444332222233334556888999999999999999988876 78899999995     6788888


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL  164 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~  164 (493)
                      .+.++.+++.+.+++.+    +++.+++.|+++|++.+...+..++++.|..+   +++|++++|+...+.++|..+|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~----~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~---~~~r~~~~g~~~~~~~~g~~ig~~  151 (390)
T PRK03545         79 GLFVLFIASHVLSALAW----NFTVLLISRIGIAFAHAIFWSITASLAIRVAP---AGKKAQALSLLATGTALAMVLGLP  151 (390)
T ss_pred             HHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---hhhhhhHHHHHHHHHHHHHHHHhh
Confidence            89888888888888765    57788999999999998888888999999884   589999999999999999999999


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhh
Q 011112          165 LGGYALTNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKR  243 (493)
Q Consensus       165 i~g~l~~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (493)
                      +++.+.+++|||++|++.+++.++..+.. .++||++++++                                       
T Consensus       152 l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---------------------------------------  192 (390)
T PRK03545        152 LGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS---------------------------------------  192 (390)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---------------------------------------
Confidence            99999999999999999887766655433 33454322110                                       


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCC
Q 011112          244 KKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILN  323 (493)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g  323 (493)
                               .                      +.+    +..+.+|+|.++......++............+++..+..|
T Consensus       193 ---------~----------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  237 (390)
T PRK03545        193 ---------G----------------------SLK----SLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAG  237 (390)
T ss_pred             ---------c----------------------hHH----HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                     0                      011    12345667766543332222111111112223445556689


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHH
Q 011112          324 LEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAV  403 (493)
Q Consensus       324 ~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~  403 (493)
                      +|..+.+.......++.+++.++.+++.||+++|+.. .+..+..++........         ++.+.......+....
T Consensus       238 ~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~l~g~~  307 (390)
T PRK03545        238 LSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA---------NSEWHLSVLSIFWGIA  307 (390)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh---------chHHHHHHHHHHHHHH
Confidence            9999999887778889999999999999999876543 44333333221111110         1111111111122222


Q ss_pred             HHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCC
Q 011112          404 NQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       404 ~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                      .........+.+.+..| +.+++++|+++...++|..+|+.++|.+.|.+|+.
T Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~  359 (390)
T PRK03545        308 IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLS  359 (390)
T ss_pred             HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence            11112223456667666 58899999999999999999999999999988764

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.96  E-value=3.1e-26  Score=234.69  Aligned_cols=363  Identities=18%  Similarity=0.168  Sum_probs=236.8

Q ss_pred             HHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccccCC-CCchhHHHHHHHHH
Q 011112           13 LWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKG-RKRIPYLVISTVLS   90 (493)
Q Consensus        13 ~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g-~~rr~~ii~~~~l~   90 (493)
                      .+.+...|+.||+. ++....++.+++ +.|.|.+++|.+ ++..+++..+++|+++.||+...+ .|||.|++....+.
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~-~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFL-PLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHH-HHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence            45577889999998 577777777766 579999999975 666778888888888888864443 35666655555444


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011112           91 LVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL  170 (493)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~  170 (493)
                      .++...++..........++....++.++..+.+|+..|++..|..+   .++++...+....+..+|.++|+.+.+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~---~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~  157 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFN---GRTLAKGNAVQIAGVMIGFFGGGAGTLVLF  157 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333333221111122233445556778889999999999888663   467777788888888899999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhh
Q 011112          171 TNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQ  250 (493)
Q Consensus       171 ~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (493)
                      ++.|||..|++.+++.++..+..++.+|++++++         + +                 +          +     
T Consensus       158 ~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~---------~-~-----------------~----------~-----  195 (390)
T TIGR02718       158 GKFGQRPAFLLVACVPLASLVCVLWLKDRAVASP---------E-A-----------------P----------L-----  195 (390)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcc---------c-c-----------------c----------h-----
Confidence            9999999999998777665555555544322110         0 0                 0          0     


Q ss_pred             hhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHH
Q 011112          251 KKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLG  330 (493)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g  330 (493)
                                               .   ..+++++.+|+|.++......++............+.|..| .|+|+++.|
T Consensus       196 -------------------------~---~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig  246 (390)
T TIGR02718       196 -------------------------A---RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIG  246 (390)
T ss_pred             -------------------------h---hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHH
Confidence                                     0   01134556788887665544444333222222233455555 799999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHh
Q 011112          331 TARVVG-WVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFM  409 (493)
Q Consensus       331 l~~~~~-~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  409 (493)
                      ...... ....+++..+.+++.||+++|+.+..+.++..+..+........+.    .+..........+..+..+..+.
T Consensus       247 ~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~  322 (390)
T TIGR02718       247 RLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWL----APGIAVAWSCSAFGSLITGITSV  322 (390)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc----CCcHHHHHHHHHHHHHHHHHHHH
Confidence            986554 4577778889999999999999988776655333222111111000    01111111111122223344444


Q ss_pred             HHHHHHhhcCCC-CchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          410 PFLILSGQLCPP-GIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       410 ~~~~~~~~~~p~-~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      +.++.+++.+++ +.+|+.+++.++..++|..++|.++|.+.|..|+
T Consensus       323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~  369 (390)
T TIGR02718       323 AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGY  369 (390)
T ss_pred             HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            556666777776 8999999999999999999999999999998764

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.96  E-value=4.4e-27  Score=244.50  Aligned_cols=375  Identities=13%  Similarity=0.073  Sum_probs=238.5

Q ss_pred             hhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHH
Q 011112           10 VSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIST   87 (493)
Q Consensus        10 ~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~   87 (493)
                      ++..+...+.++...++. .....++.+ .+++|.|.++.|+..+.+.+++.+ +++.|+++||+     +||+.+..+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~~~~~~   95 (434)
T PRK11663         22 RHILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-----NARYFMGIGL   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-----CCchhHHHHH
Confidence            344444555566666654 444444444 667999999999999999999887 79999999995     5777888888


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011112           88 VLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGG  167 (493)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g  167 (493)
                      ++..++.+++++.+    +++.+.+.|++.+++.+...+..++++.|..+   +++|++++++.+....+|..+++.+++
T Consensus        96 ~~~~~~~~~~~~~~----~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~---~~~rg~~~~~~~~~~~~g~~~~~~~~~  168 (434)
T PRK11663         96 IATGIINILFGFSS----SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYS---RTERGGWWAIWNTAHNVGGALIPLVVG  168 (434)
T ss_pred             HHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHccchHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888777664    56777888999998888887888899888874   588999999999999999999999999


Q ss_pred             HhhccccHHHHHHHHHHHHHHHHH-HhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhh
Q 011112          168 YALTNIEIDRIFLLFTVLPAIQLL-SCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKN  246 (493)
Q Consensus       168 ~l~~~~gw~~~f~~~~~~~~l~~i-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (493)
                      ++.+++|||+.|++.+++.++..+ ..+++||++++.+.+.+ ...++     +.++  .++     +       .+++.
T Consensus       169 ~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~-----~~~~--~~~-----~-------~~~~~  228 (434)
T PRK11663        169 AIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSV-GEWRH-----DALE--LAQ-----Q-------QEGAG  228 (434)
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCc-ccccc-----cccc--cch-----h-------ccccC
Confidence            999999999999988876655543 33456776533210000 00000     0000  000     0       00000


Q ss_pred             hhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCH
Q 011112          247 KKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEA  326 (493)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~  326 (493)
                            .                      +.++.++  ...+++|+++...+..++.+..........+.|+.++.|+|.
T Consensus       229 ------~----------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~  278 (434)
T PRK11663        229 ------L----------------------SRKEILT--KYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDL  278 (434)
T ss_pred             ------C----------------------ChhhhHH--HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCH
Confidence                  0                      1122111  124577777765443333232222222334556666689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChhHHHH-HHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHH
Q 011112          327 SFLGTARVVGWVGLMLGTYTYNGYLKRL--KLRRILL-LTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAV  403 (493)
Q Consensus       327 ~~~gl~~~~~~~~~~l~~~~~~~~~~~~--~~r~~l~-~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~  403 (493)
                      .+.+.......++.+++.++.+++.||+  +.|+... ...+...+. ...+.....       ..............+.
T Consensus       279 ~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~g~~  350 (434)
T PRK11663        279 VTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS-VGSLWLMPF-------ASYVMQAACFFTIGFF  350 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH-HHHHHHccc-------ccHHHHHHHHHHHHHH
Confidence            9988887777888999999999999997  3333322 111111111 111111110       1111110011111111


Q ss_pred             HHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          404 NQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       404 ~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      .............|..|++.+|+..|+.++..++|..++|.+.|.+.|++|+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~  402 (434)
T PRK11663        351 VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHW  402 (434)
T ss_pred             HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhccc
Confidence            1000111234567889999999999999999999999999999999998764

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.96  E-value=1.5e-26  Score=237.05  Aligned_cols=379  Identities=12%  Similarity=0.073  Sum_probs=248.6

Q ss_pred             hhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            7 VFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      ..+|+....+.+.++.++++. ..... .+.+++++|.|.++.|+..+++.++..+ +|++|+++||+     +||+.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-----g~r~~~~   81 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALV-LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-----GRRLPMV   81 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHH
Confidence            366777777778888888875 44444 4556888999999999999999988887 89999999995     5777888


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL  164 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~  164 (493)
                      .+.++..++.+.+++.+    +++.+++.|++.|++.+...+...+++.|..+   +++|+++.++......+|.++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~  154 (405)
T TIGR00891        82 TSIVLFSAGTLACGFAP----GYITMFIARLVIGIGMGGEYGSSAAYVIESWP---KHLRNKASGLLISGYAVGAVVAAQ  154 (405)
T ss_pred             HHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCC---hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            88888888887777764    56778899999999999999999999999884   489999999999999999999999


Q ss_pred             HHHHhhcccc--HHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhh
Q 011112          165 LGGYALTNIE--IDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKK  242 (493)
Q Consensus       165 i~g~l~~~~g--w~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (493)
                      +++.+.++.+  ||+.|++.++..++..+.....||+++.++.+++...  .++.        .++..           .
T Consensus       155 l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~-----------~  213 (405)
T TIGR00891       155 VYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKAL--VRTM--------VDILY-----------G  213 (405)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhh--hhhH--------HHHHh-----------c
Confidence            9999988766  9999988665544443444456776543311100000  0000        00000           0


Q ss_pred             hhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccc--hHHHHHHHHHHHhcccCCCcceeeeeec
Q 011112          243 RKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPE--ILRPMAWFFLAHVAVPNLSTVMFYYQTE  320 (493)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~  320 (493)
                      ..+       .                   .....++.....++..+++.  +.......+.............+.|..+
T Consensus       214 ~~~-------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (405)
T TIGR00891       214 GEH-------R-------------------IANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKA  267 (405)
T ss_pred             cch-------h-------------------hhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            000       0                   00000100011111111111  1111111111111112222334556666


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHH
Q 011112          321 ILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALV  400 (493)
Q Consensus       321 ~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~  400 (493)
                      +.|+|..+.+.+.....++.+++.++.+++.||+++|+.+..+.++..+..... ....        +..........+.
T Consensus       268 ~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~  338 (405)
T TIGR00891       268 DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPV-FAIG--------ANVAVLGLGLFFQ  338 (405)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHH-HHhC--------CchHHHHHHHHHH
Confidence            689999999998888888999999999999999999998887766543322111 1110        1111111111222


Q ss_pred             HHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          401 DAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ..+..........++.|..|++.+|+.+|+.+.+.++|..++|.++|.+.|..|
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       339 QMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            222222223345678899999999999999999999999999999999999876

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.96  E-value=9.6e-27  Score=241.06  Aligned_cols=367  Identities=14%  Similarity=0.131  Sum_probs=244.7

Q ss_pred             hchhHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      ++++......+.++.++++.....+..+.+++++|.|+.+.++..+++.+++.+ +|++|+++||+     +||+.++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-----g~r~~l~~~   89 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-----GRKPLMMWS   89 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHH
Confidence            566666666777788888764345555677889999999999999999999887 79999999995     678888899


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      .++..++.+.+++.+    +++.+++.|++.|++.+...+...+++.|..+   +++|+++.++...+..+|.++++.++
T Consensus        90 ~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~lg~~~~~~l~  162 (426)
T PRK12307         90 IVAYSVGTGLSGLAS----GVIMLTLSRFIVGMGMAGEYACASTYAVESWP---KHLKSKASAFLVSGFGIGNIIAAYFM  162 (426)
T ss_pred             HHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCC---HhHhhHhhhHHHHHHhHHHHHHHHHH
Confidence            998888888777764    57788999999999999888889999999884   58899999999999999999999999


Q ss_pred             HHhhccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhh
Q 011112          167 GYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKN  246 (493)
Q Consensus       167 g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (493)
                      +.+.++.+||+.|++..+..++........||+++..+.+.+     ++            +.    ++        +. 
T Consensus       163 ~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~-----~~------------~~----~~--------~~-  212 (426)
T PRK12307        163 PSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS-----GK------------GK----HS--------QS-  212 (426)
T ss_pred             HHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh-----cc------------cc----cc--------cc-
Confidence            999999999999987543322211111123444322110000     00            00    00        00 


Q ss_pred             hhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHH---HHhcccCCCcceeeeeeccCC
Q 011112          247 KKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFL---AHVAVPNLSTVMFYYQTEILN  323 (493)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~g  323 (493)
                                                   ..++.....++.+|+|.++........   ............+.|..+ .|
T Consensus       213 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g  262 (426)
T PRK12307        213 -----------------------------AWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EG  262 (426)
T ss_pred             -----------------------------chhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence                                         000000123345566665432221111   111111112223445544 68


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHH
Q 011112          324 LEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAV  403 (493)
Q Consensus       324 ~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~  403 (493)
                      +++.+.+.......++.+++.++.+++.||+++|+.+..+.++..+..+.. ....        ......+....+....
T Consensus       263 ~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~  333 (426)
T PRK12307        263 FDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPL-FRIP--------QDNYLLLGACLFGLMA  333 (426)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHc--------cccHHHHHHHHHHHHH
Confidence            999888888777888899999999999999999998887766554432211 1111        1111111111111111


Q ss_pred             HHhh-HhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          404 NQFK-FMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       404 ~~~~-~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      .... ......++.|..|++.+|+++|+.+...++++.++|.++|.+.+.+|+
T Consensus       334 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~  386 (426)
T PRK12307        334 TNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGL  386 (426)
T ss_pred             hcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence            1111 112245678999999999999999999999999999999999998764

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1e-27  Score=235.52  Aligned_cols=375  Identities=14%  Similarity=0.079  Sum_probs=269.0

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      .+++.++.+.+.|....+.. -.+.+. |.+.++.|+|.+|+|.+.+++.+.|.+ |+++|.++||     .+.|..+-.
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~-p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-----~npr~fm~~   99 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAM-PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-----SNPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhcc-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-----CCCceeehH
Confidence            46777777778887777765 445554 455777899999999999999999998 8999999998     467778899


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +++++.+..+++++.+    +.+.+.++.++.|...+...++....+....+   .+|||+..++++++.++|+.+.+++
T Consensus       100 gLilsai~nil~Gfs~----s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfs---r~eRG~~~siWn~shNiGGal~~~~  172 (448)
T COG2271         100 GLILSAIVNILFGFSP----SLFLFAVLWVLNGWFQGMGWPPCARTITHWFS---RKERGTWWSIWNTSHNIGGALAPLV  172 (448)
T ss_pred             HHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcC---ccccCceEEEehhhhhcccchHHHH
Confidence            9999999999999886    67788889999999989998898888888774   5999999999999999999999999


Q ss_pred             H--HHhhccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhh
Q 011112          166 G--GYALTNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKK  242 (493)
Q Consensus       166 ~--g~l~~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (493)
                      .  +++.++.+||..|+..+++.++..+.. +..+++|+...-+.-.++.+|..         +++.    |+       
T Consensus       173 ~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~---------e~~~----~~-------  232 (448)
T COG2271         173 ALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPL---------EIYE----EE-------  232 (448)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCch---------hhhh----hh-------
Confidence            9  999999999999999999888887654 45677765543111000000000         0000    00       


Q ss_pred             hhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccC
Q 011112          243 RKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEIL  322 (493)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  322 (493)
                       ++.      +        +.            +.++.+  ..-+++||.+|.+.+..++.+..-.+.+...+.|+.+..
T Consensus       233 -~~~------~--------~l------------s~~~i~--~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k  283 (448)
T COG2271         233 -KEN------E--------GL------------TAWQIF--VKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVK  283 (448)
T ss_pred             -ccC------C--------Cc------------cHHHHH--HHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence             000      0        00            223322  234689999998775544445555556666688888899


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHhhhhhhheeccccccCccCc--eEeeehhH
Q 011112          323 NLEASFLGTARVVGWVGLMLGTYTYNGYLKRL--KLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDK--TMVLYGSA  398 (493)
Q Consensus       323 g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~--~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~--~~~l~~~~  398 (493)
                      |+|..++.......-++.+.|+++.|+++||.  |+|...-+...+....+++..+..         ++.  ++.   ..
T Consensus       284 ~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~---------~~~~~~l~---~~  351 (448)
T COG2271         284 GFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA---------PNGSYLLD---AI  351 (448)
T ss_pred             CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC---------CCccHHHH---HH
Confidence            99999999888888889999999999999986  444443333333222222222211         222  211   11


Q ss_pred             HHHHHHHhhHhHHH---HHHhhcCCCCchHHHHHHHHHHHhh-hhhhhHhHHHHhHHhhcCC
Q 011112          399 LVDAVNQFKFMPFL---ILSGQLCPPGIEGTLFALFMSISNF-GSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       399 ~~~~~~~~~~~~~~---~~~~~~~p~~~~gt~~gl~~~~~~l-g~~~~~~i~g~l~~~~g~~  456 (493)
                      ....++-+.+.|.+   ....|..|++..||+.|+...++++ |.+.+...-|.+.|.+|+.
T Consensus       352 ~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~  413 (448)
T COG2271         352 LLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWD  413 (448)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCc
Confidence            22233334455653   3488999999999999999999999 8888999888888876653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.96  E-value=1.6e-26  Score=244.16  Aligned_cols=390  Identities=14%  Similarity=0.025  Sum_probs=260.5

Q ss_pred             hhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHH
Q 011112           10 VSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIST   87 (493)
Q Consensus        10 ~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~   87 (493)
                      |..++.+++.+|+..++. +++.++|.+ .+++|.+.++.+|..+.+.+++.. .|++|+++||+     +||+.++.+.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-----Grk~~l~~~~   78 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-----GFKRLLMLGG   78 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHH
Confidence            344556677788888885 888887766 667999999999999999999876 89999999995     6888999999


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011112           88 VLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGG  167 (493)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g  167 (493)
                      +++.++.+.++..+    +.+.+++.|+++|+|.+...+...+.+.+...  |+++|++++|+......+|..+||.++|
T Consensus        79 ~~~~~~~~~~~~a~----~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~--~~~~r~~~~g~~~~~~~~g~~~gp~lgg  152 (495)
T PRK14995         79 TLFGLASLAAAFSP----TASWLIATRALLAIGAAMIVPATLAGIRATFT--EEKQRNMALGVWAAVGSGGAAFGPLVGG  152 (495)
T ss_pred             HHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888875    57788999999999998887777777766553  3589999999999999999999999999


Q ss_pred             HhhccccHHHHHHHHHHHHHHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhh
Q 011112          168 YALTNIEIDRIFLLFTVLPAIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKN  246 (493)
Q Consensus       168 ~l~~~~gw~~~f~~~~~~~~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (493)
                      ++.++.||||+|++...+.++..+. .+++||++++..++.|                   ..+...   . ......  
T Consensus       153 ~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d-------------------~~g~~~---~-~~~~~~--  207 (495)
T PRK14995        153 ILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLN-------------------LGHALM---L-IVAILL--  207 (495)
T ss_pred             HhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC-------------------hHhHHH---H-HHHHHH--
Confidence            9999999999999987666555443 3456765422210000                   000000   0 000000  


Q ss_pred             hhhhhhhhhhhhhccCCCCCCc------h------hHHH-HhhHH--HHHHHHHHhhcccchHHHHHHHHHHHhcccCCC
Q 011112          247 KKNQKKRMFKIRKSQIPEKNNP------L------VIQW-FHSLK--AAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLS  311 (493)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~------~------~~~~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~  311 (493)
                            ....+++. ....+.+      .      ...+ .++.+  +.+.+ .+.+|+|.+....+..++.........
T Consensus       208 ------l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~~  279 (495)
T PRK14995        208 ------LVYSAKTA-LKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMID-MRLFTHRIILSGVVMAMTAMITLVGFE  279 (495)
T ss_pred             ------HHHHHHhc-cccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcC-HHHhCCcccHHHHHHHHHHHHHHHHHH
Confidence                  00000000 0000000      0      0001 00000  00001 356788877655544443333222222


Q ss_pred             cceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCce
Q 011112          312 TVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKT  391 (493)
Q Consensus       312 ~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~  391 (493)
                      ...+.|+++..|+|+.+.|+...+..++..+++++.+++.||+++|+.+..+.++..++... +.....      .+..+
T Consensus       280 ~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~-l~~~~~------~~~~~  352 (495)
T PRK14995        280 LLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYG-LAMTDF------STQQW  352 (495)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH-HHHhcC------CCchH
Confidence            23355667778999999999988899999999999999999999988887777666554322 111110      01111


Q ss_pred             EeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHH
Q 011112          392 MVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~  451 (493)
                      .......+..+..+....+....+.+..|+++++++.+++++..++|..+|+.+.|.+.+
T Consensus       353 ~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        353 QAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111112233333344455566778888999999999999999999999999999998865

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.96  E-value=3e-26  Score=238.10  Aligned_cols=384  Identities=14%  Similarity=0.153  Sum_probs=255.6

Q ss_pred             HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccch-
Q 011112           27 SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFR-  104 (493)
Q Consensus        27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~-  104 (493)
                      ++....+++++++++|+|+.++|.+.++..+..++ +|+.|+++||++.|+.|||++++.+.+...++..++...++.. 
T Consensus        16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~   95 (437)
T TIGR00792        16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSA   95 (437)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCc
Confidence            35666678888999999999999999999888877 8999999999987766889999999888888877777665321 


Q ss_pred             -hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh-------ccccHH
Q 011112          105 -SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL-------TNIEID  176 (493)
Q Consensus       105 -~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~-------~~~gw~  176 (493)
                       .....+++.+++.+++.+...++..++..|.++  +++||++..++......+|..+++.+.+.+.       +..+||
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~  173 (437)
T TIGR00792        96 TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITL--DPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF  173 (437)
T ss_pred             chHHHHHHHHHHHHHHHHHhhcccHhhCcccccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence             124455667777788888888899999999875  4689999999999999999888777766554       246899


Q ss_pred             HHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhh
Q 011112          177 RIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMF  255 (493)
Q Consensus       177 ~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (493)
                      +++.+.+++.++..+.+ ++.||++++.+.        ++            +     +          +       .  
T Consensus       174 ~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~--------~~------------~-----~----------~-------~--  209 (437)
T TIGR00792       174 MFALVLALIGVVSLIICFFGTKERYSEIPK--------NI------------E-----K----------K-------L--  209 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEecCCCCCc--------cc------------c-----c----------C-------C--
Confidence            99998887776665443 456765422100        00            0     0          0       0  


Q ss_pred             hhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHH
Q 011112          256 KIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVV  335 (493)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~  335 (493)
                                          +.++   .+++.++||.++...+..++............++|.+..+| ++...+.....
T Consensus       210 --------------------~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  265 (437)
T TIGR00792       210 --------------------SLKQ---IFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSI  265 (437)
T ss_pred             --------------------CHHH---HHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHH
Confidence                                1222   23345678877665544444333332222334556555566 45566766666


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHH
Q 011112          336 GWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILS  415 (493)
Q Consensus       336 ~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  415 (493)
                      ..++.+++.++.+++.||+++|+.+..+.++..++.+. .....        .+.+.+.....+..+..+.......+++
T Consensus       266 ~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~  336 (437)
T TIGR00792       266 AIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLI-FFFAG--------SNLPLILVLIILAGFGQNFVTGLVWALV  336 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH-HHHcc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78889999999999999999999988887766654322 21111        1111111111222222222333345566


Q ss_pred             hhcCC-------CCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCcc------chHHHHHH-HHhhhhhhhhhh
Q 011112          416 GQLCP-------PGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFD------NLLLGISI-QALCTFIPIAFL  481 (493)
Q Consensus       416 ~~~~p-------~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~------~~~~~~~~-~~~~~~~~~~~~  481 (493)
                      ++.+|       ++.+|+++|++++..++|..+++.+.|.+.+..|+....-+      ++...+.. ..++.+++.++.
T Consensus       337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~~~  416 (437)
T TIGR00792       337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKILMFAVPALFLLLAAIII  416 (437)
T ss_pred             hhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66654       66789999999999999999999999999998887532111      22333333 445556666655


Q ss_pred             h-cccCCCC
Q 011112          482 F-LIPKGAT  489 (493)
Q Consensus       482 ~-~l~~~~~  489 (493)
                      . ..|.++|
T Consensus       417 ~~~y~l~~~  425 (437)
T TIGR00792       417 GRFYKLTEK  425 (437)
T ss_pred             HHHeeCcHH
Confidence            4 6665544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.96  E-value=2.4e-26  Score=233.51  Aligned_cols=368  Identities=14%  Similarity=0.068  Sum_probs=236.6

Q ss_pred             HHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHH
Q 011112           17 CLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPW   94 (493)
Q Consensus        17 ~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~   94 (493)
                      .+.+|+.++. ++....+++++++++|.|++++|+..+.+.+...+ +|++|.++||+    .|||.+++.+.....++.
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~----g~r~~~~~~~~~~~~~~~   78 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ----GDRKGLILFCCLLAALAC   78 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCchHHHHHHHHHHHHHH
Confidence            3457777776 46667777788888999999999999988776554 89999999996    245555555666655565


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhH--HHHHHHHHHHHHHHHHHHHHHhhcc
Q 011112           95 LILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDL--QSLSWLAMAFGGICGSLLGGYALTN  172 (493)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~--~g~~~~~~~~G~~lg~~i~g~l~~~  172 (493)
                      ..++..+    +++.+++.|++.+.+.+...+..+++..|..++   ++|++.  .+......++|.++|+.+++++.++
T Consensus        79 ~~~~~~~----~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  151 (375)
T TIGR00899        79 LLFAWNR----NYFLLLVLGVLLSSFASTANPQLFALAREHADR---TGREAVMFSSVMRAQISLAWVIGPPLAFWLALG  151 (375)
T ss_pred             HHHHhcc----hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh---cchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence            6666654    466677788887776666777778888887642   444433  5777888899999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhh
Q 011112          173 IEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQK  251 (493)
Q Consensus       173 ~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (493)
                      .+||+.|++.+++.++..+.. +++||+++++++         ++                 +          +      
T Consensus       152 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-----------------~----------~------  189 (375)
T TIGR00899       152 FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPG---------AL-----------------T----------R------  189 (375)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCcccCccc---------cc-----------------C----------c------
Confidence            999999999887766655443 457775533210         00                 0          0      


Q ss_pred             hhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHH
Q 011112          252 KRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGT  331 (493)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl  331 (493)
                       .                      +.+       +.+++|+.+......++............+.|..+++|.++.+.|.
T Consensus       190 -~----------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  239 (375)
T TIGR00899       190 -L----------------------EVR-------GLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGL  239 (375)
T ss_pred             -c----------------------hhh-------hhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHH
Confidence             0                      001       1223444332222212211111111122345556668999998988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHH
Q 011112          332 ARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPF  411 (493)
Q Consensus       332 ~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~  411 (493)
                      .........+++.++.+++.||+++|+.+..+.++..+... .....         ++.+.......+.....+......
T Consensus       240 ~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~g~~~g~~~~~~  309 (375)
T TIGR00899       240 MMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYT-GLAAD---------NSLWALLMLQLLNAIFIGILAGIG  309 (375)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHH-HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76666667777888899999999999988776554433211 11110         111111111122222223333334


Q ss_pred             HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhcccC
Q 011112          412 LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPK  486 (493)
Q Consensus       412 ~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  486 (493)
                      +.+..|..|+ ++++++++++...++|..+++.++|.+.+.+|+.        ..+.+.+++.+++.+...+++|
T Consensus       310 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       310 MLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYH--------AVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------hHHHHHHHHHHHHHHHHheecC
Confidence            5667777775 5679999999999999999999999999976643        2445556666666666655554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.96  E-value=2.8e-26  Score=231.29  Aligned_cols=355  Identities=16%  Similarity=0.143  Sum_probs=243.4

Q ss_pred             HHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHH
Q 011112           17 CLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPW   94 (493)
Q Consensus        17 ~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~   94 (493)
                      ....++..+.. +....++.+ .++++.++.++|+..++..++..+ +|++|+++||+     +||+.++.+.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~~~~~~~~~~~~~   78 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLY-VLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-----DRKKVMIGADLIRAVLV   78 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-----chhHHHHHHHHHHHHHH
Confidence            34556666543 555555555 456899999999999999998877 89999999995     57777777777766666


Q ss_pred             HHHhhcccc-hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011112           95 LILGLNAFF-RSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI  173 (493)
Q Consensus        95 ~~~~~~~~~-~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~  173 (493)
                      ..+...+.. +.+++.+++.|++.+++.+...+..++++.|..+   +++|++++++......+|.++|+.+++.+.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  155 (365)
T TIGR00900        79 AVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVP---EEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL  155 (365)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555544311 1256778899999999999999999999999985   479999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhccc--cccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhh
Q 011112          174 EIDRIFLLFTVLPAIQLLSCGLVK--ENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQK  251 (493)
Q Consensus       174 gw~~~f~~~~~~~~l~~i~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (493)
                      +||+.|++.++..++..+..+..+  |++++++         + +           .     +       .  +      
T Consensus       156 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~-----------~-----~-------~--~------  194 (365)
T TIGR00900       156 GIKWAIWVDAVGFAISALLIVSVRIPELAASEI---------Q-A-----------L-----S-------N--A------  194 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccccCCCccc---------c-c-----------c-----c-------h--h------
Confidence            999999887765544443333332  2221110         0 0           0     0       0  0      


Q ss_pred             hhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCC-cceeeeeeccCCCCHHHHH
Q 011112          252 KRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLS-TVMFYYQTEILNLEASFLG  330 (493)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~g~s~~~~g  330 (493)
                                              ..++..+..+..+|+|.++......++......... ...++|.++.+|.++.+.+
T Consensus       195 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (365)
T TIGR00900       195 ------------------------VLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYG  250 (365)
T ss_pred             ------------------------HHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHH
Confidence                                    001111123345677777655443333222221122 2345566666899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhH
Q 011112          331 TARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMP  410 (493)
Q Consensus       331 l~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~  410 (493)
                      .......++.+++.++.+++.||.++|+.+..+..+..+..+. .....        ++.+.......+..+.......+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~  321 (365)
T TIGR00900       251 WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILV-VGLTP--------PNFPLFLVLWFAIGVGYGPINVP  321 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH-HHhhc--------hhHHHHHHHHHHHHHHHHHHHHH
Confidence            9888888899999999999999999988887765554443221 11111        11111111122233333333444


Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          411 FLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       411 ~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ..+++.+..|++.|++.+|+.++..+++..+++.++|.+.|.+|
T Consensus       322 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       322 QGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            56788999999999999999999999999999999999998764

>PRK10504 putative transporter; Provisional

Probab=99.96  E-value=6.3e-26  Score=238.26  Aligned_cols=392  Identities=18%  Similarity=0.183  Sum_probs=255.8

Q ss_pred             HHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHH
Q 011112           12 FLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVL   89 (493)
Q Consensus        12 ~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l   89 (493)
                      .++.+...++++.++. .....++.+ .+++|.|..+.++..+.+.++..+ .|++|+++||+     +||+.++.+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~   84 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSM-AQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-----GVRNIFFTAIVL   84 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHH
Confidence            4566777888888764 556666555 567999999999998888888776 79999999995     567777788777


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011112           90 SLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYA  169 (493)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l  169 (493)
                      ..++.+.+.+.+    +.+.+++.|++++++.+...+...+++.|..+   +++|+++.|+.....++|..+|+.++|.+
T Consensus        85 ~~~~~~~~~~~~----~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~g~~~~g~l  157 (471)
T PRK10504         85 FTLGSLFCALSG----TLNELLLARVLQGVGGAMMVPVGRLTVMKIVP---REQYMAAMTFVTLPGQVGPLLGPALGGLL  157 (471)
T ss_pred             HHHHHHHHHHhC----CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            777777766654    46678899999999999988888999999874   58899999999999999999999999999


Q ss_pred             hccccHHHHHHHHHHHHHHHHHHhh-ccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhh
Q 011112          170 LTNIEIDRIFLLFTVLPAIQLLSCG-LVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKK  248 (493)
Q Consensus       170 ~~~~gw~~~f~~~~~~~~l~~i~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (493)
                      .++.+||+.|++......+..+... ..|+++... .+.|                   ..+..    ........    
T Consensus       158 ~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~-~r~~-------------------~~~~~----~~~~~~~~----  209 (471)
T PRK10504        158 VEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQT-RRFD-------------------LSGFL----LLAVGMAT----  209 (471)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccC-CCCC-------------------hHHHH----HHHHHHHH----
Confidence            9999999999987765555444333 334332111 0000                   00000    00000000    


Q ss_pred             hhhhhhhhhhhccCCCCCCc-----------hhH-HHHhhHHHHHHH--HHHhhcccchHHHHHHHHHHHhcccCCCcce
Q 011112          249 NQKKRMFKIRKSQIPEKNNP-----------LVI-QWFHSLKAAIYS--LYSAFRQPEILRPMAWFFLAHVAVPNLSTVM  314 (493)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  314 (493)
                          ......++. ...+..           ... .+....++..++  -.+++|||.+...+...++............
T Consensus       210 ----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  284 (471)
T PRK10504        210 ----LTLALDGSK-GLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMT  284 (471)
T ss_pred             ----HHHHHhcCC-cCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence                000000000 000000           000 000000000000  1246788887766555454343332222334


Q ss_pred             eeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEee
Q 011112          315 FYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVL  394 (493)
Q Consensus       315 ~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l  394 (493)
                      ++|.+...|.++.+.++......++.+++.++.+++.||+++|+.+..+.++..+..++... ...      .++.+...
T Consensus       285 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~  357 (471)
T PRK10504        285 PVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFML-VAL------LGWYYLLP  357 (471)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHh-ccc------cccHHHHH
Confidence            56666668999999999888888888888889999999999999998887766665332211 110      01111111


Q ss_pred             ehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCC
Q 011112          395 YGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                      ....+.....+..+.+.+.+..+..|++.+|+++++.++..++|..+|+.++|.+.+..|+.
T Consensus       358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        358 FVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            11112223333344555677888999999999999999999999999999999999987763

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.96  E-value=5.5e-26  Score=233.87  Aligned_cols=357  Identities=18%  Similarity=0.158  Sum_probs=239.2

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++|....+....+++++++. ......+ .+.+++|.|+++.|+..+...++..+ .+++|+++||+     +||+.+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~   85 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-----GRKRILIV   85 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHH
Confidence            45555555556677788764 5555544 45778999999999999999998887 78999999995     57777888


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +.++..++.+.+.+.+    +++.+++.|++.+++.+...+...+++.|..+   +++|++++++.+....+|..+++.+
T Consensus        86 ~~~~~~~~~~~~~~~~----~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~~  158 (406)
T PRK11551         86 SVALFGLFSLATAQAW----DFPSLLVARLLTGVGLGGALPNLIALTSEAVG---PRLRGTAVSLMYCGVPFGGALASVI  158 (406)
T ss_pred             HHHHHHHHHHHHHHhc----cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877777777666654    56778899999999999988889999999884   4899999999999999999999999


Q ss_pred             HHHhhccccHHHHHHHHHHHHHHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhh
Q 011112          166 GGYALTNIEIDRIFLLFTVLPAIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRK  244 (493)
Q Consensus       166 ~g~l~~~~gw~~~f~~~~~~~~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (493)
                      ++.+.+..+||+.|++.+++.++..+. .+++||++++.+.+.      + +           +     +          
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~-~-----------~-----~----------  205 (406)
T PRK11551        159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAG------A-G-----------K-----Q----------  205 (406)
T ss_pred             HHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccC------c-c-----------h-----h----------
Confidence            999989899999999877665555443 345787654331000      0 0           0     0          


Q ss_pred             hhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCC
Q 011112          245 KNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNL  324 (493)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~  324 (493)
                      +       .                      +..+   ..++..++++.+......++............+.|..+ .|+
T Consensus       206 ~-------~----------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~  252 (406)
T PRK11551        206 R-------A----------------------PVLR---ALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGL  252 (406)
T ss_pred             h-------h----------------------hhHH---HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence            0       0                      0000   00000011111111111111111111111122444444 699


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHH
Q 011112          325 EASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVN  404 (493)
Q Consensus       325 s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~  404 (493)
                      ++.+.+.......++.+++.++.+++.||.++|+.+..+.+...+..+. +...         ++.+.......+.....
T Consensus       253 s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~~g~~~  322 (406)
T PRK11551        253 SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAA-LAAA---------PSFAGMLLAGFAAGLFV  322 (406)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhc---------CcHHHHHHHHHHHHHHH
Confidence            9999999888888899999999999999999999887765544433211 1111         11111111111222222


Q ss_pred             HhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhh
Q 011112          405 QFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSL  453 (493)
Q Consensus       405 ~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~  453 (493)
                      .......+++..+..|++.|++.+|++++..++|..++|.++|.+.++.
T Consensus       323 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  371 (406)
T PRK11551        323 VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG  371 (406)
T ss_pred             HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence            2222334677899999999999999999999999999999999998853

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.96  E-value=9.9e-26  Score=231.34  Aligned_cols=349  Identities=11%  Similarity=0.059  Sum_probs=233.9

Q ss_pred             chhHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIST   87 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~   87 (493)
                      +|+.+..+..+.+..........++.|.+.+++|+|+++.|+..+.+.+...+ +|++|+++||+     +||+.++.+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-----grr~~~~~~~   92 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-----DRRYVVILFA   92 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcHHHHHHHH
Confidence            34444444444444443332222333445778999999999999988888876 89999999995     6788888999


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011112           88 VLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGG  167 (493)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g  167 (493)
                      ++.+++.+.+.+.+    +++.+++.|+++|++.+...+..++++.|..+   +++|+++.++.....++|..+||.+++
T Consensus        93 ~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---~~~~~~a~~~~~~~~~~g~~ig~~l~~  165 (394)
T PRK10213         93 VLLTLSCLLVSFAN----SFSLLLIGRACLGLALGGFWAMSASLTMRLVP---PRTVPKALSVIFGAVSIALVIAAPLGS  165 (394)
T ss_pred             HHHHHHHHHHHHHC----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888777764    57888999999999999998999999999884   589999999999999999999999999


Q ss_pred             HhhccccHHHHHHHHHHHHHHHHHHhh-ccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhh
Q 011112          168 YALTNIEIDRIFLLFTVLPAIQLLSCG-LVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKN  246 (493)
Q Consensus       168 ~l~~~~gw~~~f~~~~~~~~l~~i~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (493)
                      ++.+++|||+.|++.+++.++..+... ..||++++++                             +            
T Consensus       166 ~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~-----------------------------~------------  204 (394)
T PRK10213        166 FLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPS-----------------------------H------------  204 (394)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccc-----------------------------c------------
Confidence            999999999999988766555443332 3455431110                             0            


Q ss_pred             hhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcce-eeeeeccCCCC
Q 011112          247 KKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVM-FYYQTEILNLE  325 (493)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~g~s  325 (493)
                                                   ..+    +.++.+|+|.++......++............ +.| .++.|++
T Consensus       205 -----------------------------~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~g~s  250 (394)
T PRK10213        205 -----------------------------QKQ----NTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVY-MNLAGFG  250 (394)
T ss_pred             -----------------------------chh----HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence                                         000    11234567776654433333222111111222 334 3457999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHH
Q 011112          326 ASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQ  405 (493)
Q Consensus       326 ~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~  405 (493)
                      +.+.+.......++.+++..+.+++.||.+ |+.+..+..+..+..+......         ++.+.......+..+...
T Consensus       251 ~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~l~G~~~~  320 (394)
T PRK10213        251 VDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG---------SDKIVATGVAIIWGLTFA  320 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHH
Confidence            999999888888899999999999999954 4444444333333222111110         111111111222333333


Q ss_pred             hhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          406 FKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       406 ~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      .......+++.+..| ++++...++..+..++|..+|+.++|.+.|.+|+
T Consensus       321 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~  369 (394)
T PRK10213        321 LVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGL  369 (394)
T ss_pred             hhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            333334556777777 4567788888889999999999999999998764

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.95  E-value=1.5e-26  Score=238.85  Aligned_cols=381  Identities=13%  Similarity=0.085  Sum_probs=246.6

Q ss_pred             hhhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112            6 NVFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus         6 ~~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      |+.+|...+.+.+.|+++.++. .+.... +.+++|+|+|.+++|+..+.+.+++.+ +++.|+++||+     +||+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----G~r~~~   76 (412)
T TIGR02332         3 KKLFRRLIIFLFILFIFSFLDRINIGFAG-LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-----GARRWI   76 (412)
T ss_pred             eeehhHHHHHHHHHHHHHHhhhhhHHHHH-HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-----ChHHHH
Confidence            3456777777888888888875 555554 466889999999999999999999887 79999999995     677888


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGS  163 (493)
Q Consensus        84 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~  163 (493)
                      ..+.++..++.+.+++.+    +++.+++.|++.|++.+...+...+++.|..+   +++|+++.+++.....+|.++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~---~~~rg~~~~~~~~~~~~g~~~~~  149 (412)
T TIGR02332        77 AGIMVLWGIASTATMFAT----GPESLYLLRILVGIAEAGFLPGILLYLTFWFP---AYFRARANALFMIAMPVTMALGL  149 (412)
T ss_pred             HHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            889888888888887765    46788899999999999887777788888884   58899999999999999999999


Q ss_pred             HHHHHhhc------cccHHHHHHHHHHHHHHHHH-Hhhccccccccchh--hhcccccCCCcccCCCCcccCCCCCcccc
Q 011112          164 LLGGYALT------NIEIDRIFLLFTVLPAIQLL-SCGLVKENRVSTKV--LKEFSSSNGYHQVNGNESILDDEDGFSEE  234 (493)
Q Consensus       164 ~i~g~l~~------~~gw~~~f~~~~~~~~l~~i-~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (493)
                      .+++++.+      ..|||++|++.+++.++..+ .++++||++++.+.  .++++..++  +.++.+. ..++   +++
T Consensus       150 ~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~--~~~~~~~-~~~~---~~~  223 (412)
T TIGR02332       150 ILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKE--MIDNDQL-TLEQ---PEG  223 (412)
T ss_pred             HHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHH--HHHhccc-cccc---ccc
Confidence            99998864      46999999998877766554 44567887643210  000000000  0000000 0000   000


Q ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcce
Q 011112          235 KYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVM  314 (493)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  314 (493)
                      .     ..+++       .                      ..+    ..++.+++|.++...+..++.........+..
T Consensus       224 ~-----~~~~~-------~----------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (412)
T TIGR02332       224 A-----FAHAA-------M----------------------PQR----SMLREIFTPAIMLYTLAYFCLTNTLSAINIWT  265 (412)
T ss_pred             c-----ccccc-------c----------------------cHH----HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0     00000       0                      011    11222335666554443333222222233344


Q ss_pred             eeeeec-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH-HHHHHHHHhhhhhhheeccccccCccCceE
Q 011112          315 FYYQTE-ILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLL-TQVGLSILSFLDIVLVSRMNLTVGISDKTM  392 (493)
Q Consensus       315 ~~~~~~-~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~-~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~  392 (493)
                      +.|+++ ..|+|..+.+.......++.+++.++.+++.||+++|+...+ ..+...+. +...  ...       .....
T Consensus       266 p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~-~~~~--~~~-------~~~~~  335 (412)
T TIGR02332       266 PQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAG-WLLA--SAT-------DHNLI  335 (412)
T ss_pred             HHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHH-HHHH--Hhc-------CCHHH
Confidence            556655 247788888888888888999999999999999987775332 22222222 1111  110       11111


Q ss_pred             eeehhHHHHHHHHhhHhHH-HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          393 VLYGSALVDAVNQFKFMPF-LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      .+.. ......+.....+. .+...+..|++.+++++|+.+...++|+.++|.+.|.+.|..|
T Consensus       336 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g  397 (412)
T TIGR02332       336 QLLG-IIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG  397 (412)
T ss_pred             HHHH-HHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence            1100 11111111111122 2344567899999999999999999999999999999988754

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.95  E-value=1.3e-26  Score=243.33  Aligned_cols=376  Identities=12%  Similarity=0.032  Sum_probs=240.2

Q ss_pred             hhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHH
Q 011112           10 VSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIST   87 (493)
Q Consensus        10 ~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~   87 (493)
                      ++.+.+..+.|++..++. ......++ +++++|.|.++.|++.+.+.+++.+ +|++|+++||+     +||+.+..+.
T Consensus        28 ~~i~~~~~~~~~~~y~~r~~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~r~~l~~~~  101 (467)
T PRK09556         28 MQSYLVVFIGYLTMYLIRKNFKAAQND-MISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-----NTKQFLPFLL  101 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhhhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-----CccchHHHHH
Confidence            334445556666666654 55555554 5778999999999999999999987 89999999995     5777777777


Q ss_pred             HHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           88 VLSLVPWLILGLNA-FFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        88 ~l~~~~~~~~~~~~-~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      ++..+..+.++... ....+++.+++.|+++|++.+...+...+++.|..   |+++||+++|++....++|.++++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~---~~~~rg~a~gi~~~~~~lG~~l~~~i~  178 (467)
T PRK09556        102 ILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWT---PRRKRGRFLGFWNISHNLGGAGAGGVA  178 (467)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHc---CccceeeeEEeeecccchhhhHHHHHH
Confidence            66666555544321 01136778899999999999888888889998888   458999999999999999999999998


Q ss_pred             HHhhccc---cHHHHHHHHHHHHHHHHHHhh-ccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhh
Q 011112          167 GYALTNI---EIDRIFLLFTVLPAIQLLSCG-LVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKK  242 (493)
Q Consensus       167 g~l~~~~---gw~~~f~~~~~~~~l~~i~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (493)
                      .++.++.   +||..|.+.+++.++..+..+ +.++++++.+...+      ++..++..   .++..   +       .
T Consensus       179 ~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~------~~~~~~~~---~~~~~---~-------~  239 (467)
T PRK09556        179 LWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA------EEIFGEPI---SEEDK---E-------T  239 (467)
T ss_pred             HHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh------hhcccCcc---chhhh---c-------c
Confidence            8776653   699999888877766655443 44554432210000      00000000   00000   0       0


Q ss_pred             hhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccC
Q 011112          243 RKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEIL  322 (493)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  322 (493)
                      +++.      .                      +.++.+  ....+|+|.+|...+..++.+..........+.|+++.+
T Consensus       240 ~~~~------~----------------------~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~  289 (467)
T PRK09556        240 ESTD------M----------------------TKWQIF--VEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQEL  289 (467)
T ss_pred             cccc------C----------------------cHHHHH--HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            0000      0                      111111  112578888887665544433333333334566777779


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHH
Q 011112          323 NLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDA  402 (493)
Q Consensus       323 g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~  402 (493)
                      |+|..+.++......++.+++.++.|++.||.++|+.+........+.... .....       .++........+....
T Consensus       290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~G~  361 (467)
T PRK09556        290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTL-GVYQH-------ATSEYMYLASLFALGF  361 (467)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHH-HHHHh-------cCcHHHHHHHHHHHHH
Confidence            999999998877788889999999999999999888766544333322111 11110       0111111011111111


Q ss_pred             HHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhh-hhhhhHhHHHHhHH
Q 011112          403 VNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNF-GSTVGSFFGAGLAS  451 (493)
Q Consensus       403 ~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~l-g~~~~~~i~g~l~~  451 (493)
                      .......+......|..|++.+|++.|+.++..++ |..++|.+.|.+.|
T Consensus       362 ~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        362 LVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            11011111224567999999999999999999997 66899999999998

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.95  E-value=5.9e-26  Score=246.22  Aligned_cols=183  Identities=13%  Similarity=0.116  Sum_probs=146.1

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++|..++++.+.++..+++. .+.. +.|.+.+++|++..+.+++.+++.+++.+ .+++|+++||+     +||+.+++
T Consensus       164 ~~~~l~~i~~l~~~~~g~d~~~is~-ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-----GRR~~lii  237 (742)
T TIGR01299       164 FQWALFFVLGLALMADGVEVFVVGF-VLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-----GRKQCLLI  237 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHH
Confidence            34555555556667777765 4444 44566778999999999999999999888 68999999995     67778888


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +.++..++.+++++++    +++.++++|++.|++.+...+...+++.|..   |+++||+..++...+..+|.++++.+
T Consensus       238 ~lil~~i~~ll~afa~----s~~~llv~R~l~G~g~g~~~p~~~~~isE~~---p~~~Rg~~~g~~~~~~~iG~ila~~l  310 (742)
T TIGR01299       238 CLSVNGFFAFFSSFVQ----GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFL---AQEKRGEHLSWLCMFWMIGGIYAAAM  310 (742)
T ss_pred             HHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888877777664    5678889999999999999999999999998   45899999999999999999999988


Q ss_pred             HHHhhcc-------------ccHHHHHHHHHHHHHHHHHHhhccccccccc
Q 011112          166 GGYALTN-------------IEIDRIFLLFTVLPAIQLLSCGLVKENRVST  203 (493)
Q Consensus       166 ~g~l~~~-------------~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~  203 (493)
                      +..+..+             .+||+.+++.++..++..+..+++||+|++.
T Consensus       311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL  361 (742)
T TIGR01299       311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF  361 (742)
T ss_pred             HHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            8766543             3689998887766555555667799998764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.95  E-value=4.2e-26  Score=230.89  Aligned_cols=336  Identities=13%  Similarity=0.079  Sum_probs=229.9

Q ss_pred             HHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 011112           31 TAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWH  109 (493)
Q Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~  109 (493)
                      .++.|.+++++|+|.+++|+..+++.+++.+ +|++|+++||+     +||+.++.+.++.+++...+++.+    +++.
T Consensus        23 ~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-----G~r~~~~~~~~~~~~~~~~~~~~~----~~~~   93 (377)
T TIGR00890        23 TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-----GPRAVAMLGGILYGLGFTFYAIAD----SLAA   93 (377)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-----CccchhHHhHHHHHHHHHHHHHHH----HHHH
Confidence            4456677889999999999999999999987 89999999995     567777888888888888777765    5778


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Q 011112          110 LIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQ  189 (493)
Q Consensus       110 l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~  189 (493)
                      +.+.|++.+++.+.........+.+..    +++|+++.++......+|..+++.+.+.+.+..+||+.|++.+++.++.
T Consensus        94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  169 (377)
T TIGR00890        94 LYLTYGLASAGVGIAYGIALNTAVKWF----PDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLV  169 (377)
T ss_pred             HHHHHHHHhHHHHHHHHhHHHHHHHHc----CcccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            889999999988876655555555554    3679999999999999999887777777777889999999988777766


Q ss_pred             HHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCc
Q 011112          190 LLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNP  268 (493)
Q Consensus       190 ~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (493)
                      .+.. ++.+|+++++++        +++                 +.         +                       
T Consensus       170 ~~~~~~~~~~~~~~~~~--------~~~-----------------~~---------~-----------------------  192 (377)
T TIGR00890       170 IVLGAFLIGYPPGQLIK--------TNI-----------------EV---------S-----------------------  192 (377)
T ss_pred             HHHHHHheecCchhccc--------cCc-----------------cc---------c-----------------------
Confidence            6544 345554332210        000                 00         0                       


Q ss_pred             hhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 011112          269 LVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYN  348 (493)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~  348 (493)
                             ..+   ++.++.+|+|+++...+..++............++|. +++|.++.+.+.......++.+++.++.+
T Consensus       193 -------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  261 (377)
T TIGR00890       193 -------VKD---YTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLG  261 (377)
T ss_pred             -------hhh---hhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   000   0123445677766544333322221111111223343 44788888888888888889999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHH
Q 011112          349 GYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLF  428 (493)
Q Consensus       349 ~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~  428 (493)
                      ++.||.++|+.+..+.++..+..+.. .....       ......+....+.....+........++.|..|++++++.+
T Consensus       262 ~l~dr~g~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  333 (377)
T TIGR00890       262 ALSDKIGRQKTMSIVFGISAVGMAAM-LFIPM-------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANY  333 (377)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHH-HHccc-------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHh
Confidence            99999999998888777666543221 11110       01111111111122222222223346788999999999999


Q ss_pred             HHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          429 ALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       429 gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      |+.+...++|..++|.+.|.+.+..|+
T Consensus       334 g~~~~~~~~g~~~~~~~~g~l~~~~g~  360 (377)
T TIGR00890       334 GFLYTAKAVAGIFGGLIASHALTEIGF  360 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence            999999999999999999999987764

>TIGR00901 2A0125 AmpG-related permease

Probab=99.95  E-value=7.1e-26  Score=228.98  Aligned_cols=335  Identities=19%  Similarity=0.165  Sum_probs=222.3

Q ss_pred             HHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccccCC-CCchhHHHHHHHHHHHHHHHHhhcccchhhH
Q 011112           29 VWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKG-RKRIPYLVISTVLSLVPWLILGLNAFFRSST  107 (493)
Q Consensus        29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g-~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~  107 (493)
                      ....++.+ .+|+|+|.+++|+..+. .+++.++|++|+++||++.++ .|||++++.+.++..++...+++.++. .+.
T Consensus         7 ~~~~~~~~-~~~~g~s~~~~g~~~~~-~~~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~-~~l   83 (356)
T TIGR00901         7 VGNTLPYW-LRSKNVSLKTIGFFSLV-GLPYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS-TDL   83 (356)
T ss_pred             HHhHHHHH-HHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc-hhH
Confidence            33444444 56799999999987544 678777999999999986542 256667788888887777677666432 244


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc--------HHHHH
Q 011112          108 WHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIE--------IDRIF  179 (493)
Q Consensus       108 ~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~g--------w~~~f  179 (493)
                      +.+....++.+++.+..+++.++++.|..+   +++|+++.++...+..+|.++++.+++.+.++.+        ||.+|
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f  160 (356)
T TIGR00901        84 PLLAGLAFLIAFFSATQDIALDAWRLEILS---DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIF  160 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHH
Confidence            555666667788889999999999999984   4899999999999999999999999999998888        99999


Q ss_pred             HHHHHHHHHHHHHhh-ccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhh
Q 011112          180 LLFTVLPAIQLLSCG-LVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIR  258 (493)
Q Consensus       180 ~~~~~~~~l~~i~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (493)
                      ++.+++.++..+..+ ..||+++++..        +                   ++        .+       .     
T Consensus       161 ~i~ai~~l~~~~~~~~~~~e~~~~~~~--------~-------------------~~--------~~-------~-----  193 (356)
T TIGR00901       161 FWTALLILPGLLVTLFLAKEPQEDASV--------P-------------------KP--------LT-------Q-----  193 (356)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCccccc--------c-------------------hh--------HH-------H-----
Confidence            988876655444444 34654321100        0                   00        00       0     


Q ss_pred             hccCCCCCCchhHHHHhhHHHHHHHHHHhhcccc---hHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHH-
Q 011112          259 KSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPE---ILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARV-  334 (493)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~-  334 (493)
                                       +.++   .+.+.+++|.   ++...+..++............++|..+ .|+++++.|.... 
T Consensus       194 -----------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~  252 (356)
T TIGR00901       194 -----------------AVLK---PIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKI  252 (356)
T ss_pred             -----------------HHHH---HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHH
Confidence                             1112   2233445554   4444433333233222233344566666 8999999998754 


Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccc-cccCccCceEeeehhHHHHHHHHhhHhHHHH
Q 011112          335 VGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMN-LTVGISDKTMVLYGSALVDAVNQFKFMPFLI  413 (493)
Q Consensus       335 ~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~-~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~  413 (493)
                      .+.++.+++.++++++.||.++|+.+..+.++..+............. ...+.++.+.+.....+..+..+....+..+
T Consensus       253 ~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  332 (356)
T TIGR00901       253 NGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVA  332 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            455778899999999999999999988887776654332221111100 0000011121222223334444556666788


Q ss_pred             HHhhcCCCCchHHHHHHHHHHHhh
Q 011112          414 LSGQLCPPGIEGTLFALFMSISNF  437 (493)
Q Consensus       414 ~~~~~~p~~~~gt~~gl~~~~~~l  437 (493)
                      +++|.+|++++|+.+|++++..++
T Consensus       333 ~~~~~~p~~~~g~~~g~~~~~~~~  356 (356)
T TIGR00901       333 FLSKLSNPKFGATQMALLSSLSAL  356 (356)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHhC
Confidence            999999999999999999887764

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.95  E-value=1e-25  Score=228.68  Aligned_cols=328  Identities=13%  Similarity=0.052  Sum_probs=207.6

Q ss_pred             HHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHH
Q 011112           30 WTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTW  108 (493)
Q Consensus        30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~  108 (493)
                      ..+..|.+++|+|+|+++.|+..+.+.+++.+ ++++|+++||+     +||+.++.+......+.. +....   .+++
T Consensus        10 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-----grr~~~~~~~~~~~~~~~-~~~~~---~~~~   80 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-----FKRWFLFGSLATFAAAAG-RLLDP---FNYE   80 (368)
T ss_pred             HHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHHHHHHHHHHHHHH-HHHHh---ccHH
Confidence            44555666889999999999999999999887 78999999995     466665554444433322 22221   2577


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Q 011112          109 HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAI  188 (493)
Q Consensus       109 ~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l  188 (493)
                      .+++.|+++|++.+.. .+....+.|..   |+++|+++.++...+..+|.++++.+++++.+++|||+.|++.++++++
T Consensus        81 ~l~~~R~l~G~g~~~~-~~~~~~~~~~~---~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~  156 (368)
T TIGR00903        81 WLLACQLLAALGQPFL-LNAFAPAASQI---REERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAA  156 (368)
T ss_pred             HHHHHHHHHHhHhHHH-HHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence            8999999999998864 45556667776   4599999999999999999999999999999999999999998888777


Q ss_pred             HHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCC
Q 011112          189 QLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNN  267 (493)
Q Consensus       189 ~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (493)
                      ..+. .+++||++++++         +.+                 +                                 
T Consensus       157 ~~~~~~~~lp~~p~~~~---------~~~-----------------~---------------------------------  177 (368)
T TIGR00903       157 GIILVLAALPALPFQAA---------EGF-----------------G---------------------------------  177 (368)
T ss_pred             HHHHHHHHcCCCCCCCC---------CCc-----------------c---------------------------------
Confidence            6654 456788754321         000                 0                                 


Q ss_pred             chhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011112          268 PLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTY  347 (493)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~  347 (493)
                               .++..+++++.+|+|.++...+..++............+.|+.+ .|+|.. .+.......+...++....
T Consensus       178 ---------~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g~~~~  246 (368)
T TIGR00903       178 ---------FKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIGVAVI  246 (368)
T ss_pred             ---------hHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHHHHHh
Confidence                     00001234567788888877655555444433344445666644 678864 5554444444444443222


Q ss_pred             HHHHhcCChhHHHHH-HHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHH
Q 011112          348 NGYLKRLKLRRILLL-TQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGT  426 (493)
Q Consensus       348 ~~~~~~~~~r~~l~~-~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt  426 (493)
                      ....||.++|+.... ..++..+. +..+...         .+....+....+..+.....+...+++.+|.+|++.||+
T Consensus       247 ~d~~~r~~~r~~~~~~~~~~~a~~-~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt  316 (368)
T TIGR00903       247 PDRVARAGLRSIYIRAAALLIAAF-FLALAFE---------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGK  316 (368)
T ss_pred             hHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHc---------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCc
Confidence            222233343443332 22222221 1111110         011111111111222222222335678999999999999


Q ss_pred             HHHHHHHHHhhhhhhhHhHHHHhH
Q 011112          427 LFALFMSISNFGSTVGSFFGAGLA  450 (493)
Q Consensus       427 ~~gl~~~~~~lg~~~~~~i~g~l~  450 (493)
                      +.|+.++.+++++.++|.+.+.+.
T Consensus       317 ~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       317 AAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999989988877666

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.95  E-value=1.3e-25  Score=232.18  Aligned_cols=379  Identities=15%  Similarity=0.101  Sum_probs=245.7

Q ss_pred             HHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHH
Q 011112           16 ICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVP   93 (493)
Q Consensus        16 ~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~   93 (493)
                      +....++..+. ++....++.+ .++++.+..+.|+..+...+++.+ ++++|+++||+     +||+.++.+..+.+++
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-----g~~~~l~~~~~~~~~~   95 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-----DRKKLILLARGTCGLG   95 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-----CCceEEEehHHHHHHH
Confidence            44445555554 3555555444 556888999999999999999887 79999999995     5666776776666665


Q ss_pred             HHHHhhcc-cchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011112           94 WLILGLNA-FFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN  172 (493)
Q Consensus        94 ~~~~~~~~-~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~  172 (493)
                      ...+.... ...++++.+.+.|++.+++.+...++.++++.|..+   +++|+++.++.....++|..+|+.+++.+.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~  172 (417)
T PRK10489         96 FIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVG---RENLMQAGAITMLTVRLGSVISPALGGLLIAA  172 (417)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC---HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence            54433210 001256677889999999888888888888888874   48899999999999999999999999999998


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhh
Q 011112          173 IEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKK  252 (493)
Q Consensus       173 ~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (493)
                      .+|++.|++.++..++..+..+.+||++++.+.          +                 ++        ..       
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~-----------------~~--------~~-------  210 (417)
T PRK10489        173 GGVAWNYGLAAAGTFITLLPLLRLPALPPPPQP----------R-----------------EH--------PL-------  210 (417)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc----------c-----------------cc--------ch-------
Confidence            899999988776655544444556665432210          0                 00        00       


Q ss_pred             hhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHH
Q 011112          253 RMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTA  332 (493)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~  332 (493)
                      .                      +.++   .++..+++|.++...+..++... ........+.|..+.+|+++...|.+
T Consensus       211 ~----------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~  264 (417)
T PRK10489        211 R----------------------SLLA---GFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLL  264 (417)
T ss_pred             H----------------------HHHH---HHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHH
Confidence            0                      1111   22334566665444333222111 11222234556666689999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHH
Q 011112          333 RVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFL  412 (493)
Q Consensus       333 ~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~  412 (493)
                      .....++.+++.++.+++.||.++++.+..+.++..+... .+...         ++.........+.............
T Consensus       265 ~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~  334 (417)
T PRK10489        265 YAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVG-LFGLM---------PMWILAVLCLALFGYLSAISSLLQY  334 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHH-HHHcc---------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999987777777777665554321 11111         1111111111112222222222235


Q ss_pred             HHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhcccCCC
Q 011112          413 ILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKGA  488 (493)
Q Consensus       413 ~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  488 (493)
                      +++.+..|++.||+.+|+++...++|..+|+.++|.+.+.+|...       .......+..++..+....+||.+
T Consensus       335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVA-------SASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHHHHHHHhccccc
Confidence            678899999999999999999999999999999999999876432       122223333344444445666544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.95  E-value=2.7e-25  Score=230.99  Aligned_cols=352  Identities=14%  Similarity=0.077  Sum_probs=218.7

Q ss_pred             HHHHHHHhHHHhHHHHHHHHHHhhhC---CCHhhHHHHHHHHHhhH---hh-hhhhhhcccccccCCCCchhHHHHHHHH
Q 011112           17 CLIYFTQGFRSFVWTAVSYQLKDKLK---FSPSASQFVSAVAFFPW---SI-KPLYGILSDCIPIKGRKRIPYLVISTVL   89 (493)
Q Consensus        17 ~~~~f~~g~~~~~~~~~~~~l~~~~g---~s~~~~g~~~s~~~l~~---~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l   89 (493)
                      .+.++++.++........+++.++++   .+..+.+...+++.+.+   .+ ++++|+++||+     +||+.++.+.++
T Consensus        28 ~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-----Grr~~l~~~~~~  102 (432)
T PRK10406         28 SSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-----GRKKSMLISVCM  102 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHH
Confidence            34577788876444555667788874   56665544444444443   35 67899999995     788899999999


Q ss_pred             HHHHHHHHhhcccch----hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           90 SLVPWLILGLNAFFR----SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        90 ~~~~~~~~~~~~~~~----~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +.++.+.++++++.+    .+...++++|+++|++.+...+...+++.|..+   +++||+..+........|..+++.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p---~~~rg~~~~~~~~~~~~G~~~~~~~  179 (432)
T PRK10406        103 MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV---EGRKGFYASFQYVTLIGGQLLALLV  179 (432)
T ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC---CCcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999888876421    123468899999999999999999999999884   5899999999888888888888877


Q ss_pred             HHHhh--------ccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchh
Q 011112          166 GGYAL--------TNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYN  237 (493)
Q Consensus       166 ~g~l~--------~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (493)
                      +..+.        +.+|||++|++.+++.++........||+++.+.+        + +                 +   
T Consensus       180 ~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~--------~-~-----------------~---  230 (432)
T PRK10406        180 VVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR--------A-L-----------------K---  230 (432)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh--------h-h-----------------c---
Confidence            65543        25799999998776655443333345665432210        0 0                 0   


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHH-HHhcccCCCcceee
Q 011112          238 ISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFL-AHVAVPNLSTVMFY  316 (493)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l-~~~~~~~~~~~~~~  316 (493)
                            ++       .                      +.       ++.+|+|+.+...+..++ ............+.
T Consensus       231 ------~~-------~----------------------~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~  268 (432)
T PRK10406        231 ------EA-------G----------------------SL-------KGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQK  268 (432)
T ss_pred             ------cc-------c----------------------cH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  00       0                      11       122344544433222111 11111112223355


Q ss_pred             eeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeeh
Q 011112          317 YQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYG  396 (493)
Q Consensus       317 ~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~  396 (493)
                      |+.+..|++..+.+...........++.++.+++.||.++|+.+....++..+..........  +    .......+..
T Consensus       269 ~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~  342 (432)
T PRK10406        269 YLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ--N----VSSPYAAFGL  342 (432)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH--c----CCcHHHHHHH
Confidence            555668999888888766666666777888899999999999877665543332211111110  0    0111111111


Q ss_pred             hHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhh-hhhhhHhHHHHhHHhhc
Q 011112          397 SALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNF-GSTVGSFFGAGLASSLS  454 (493)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~l-g~~~~~~i~g~l~~~~g  454 (493)
                      ..+..........+..++.+|..|++.|++++|+.+.++++ .+...|.+.+.+ +..|
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g  400 (432)
T PRK10406        343 VMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIG  400 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhC
Confidence            11111111222223456789999999999999999988775 344577777755 4433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.95  E-value=2.3e-25  Score=227.65  Aligned_cols=342  Identities=17%  Similarity=0.113  Sum_probs=230.4

Q ss_pred             HHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHH
Q 011112           13 LWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLS   90 (493)
Q Consensus        13 ~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~   90 (493)
                      .+.+....+..+... .... ..|.+++++|.|.++.|+..+.+.++..+ +|++|+++||+     +||+.+..+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~   78 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMG-VLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-----SLKHILLFLVALC   78 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHh-ChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-----ccHHHHHHHHHHH
Confidence            344556667777765 4444 44556788999999999999999999887 79999999995     6888888999999


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011112           91 LVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL  170 (493)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~  170 (493)
                      .++.+++++++    +++.+++.|++.|++.+...+...+++.|..+   +++|+++++....+..+|..+|+.+++++.
T Consensus        79 ~~~~~l~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         79 VIGNAMFTLSS----SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIK---PGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             HHHHHHHHHhC----cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC---hHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence            98888888775    57788899999999988877777778778764   478999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhh
Q 011112          171 TNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKN  249 (493)
Q Consensus       171 ~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (493)
                      +..+||+.|++.+++.++..+.. ++.||.+++++                             +               
T Consensus       152 ~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~-----------------------------~---------------  187 (382)
T PRK10091        152 QEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAK-----------------------------G---------------  187 (382)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc-----------------------------c---------------
Confidence            99999999999887766655433 44666432110                             0               


Q ss_pred             hhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHH
Q 011112          250 QKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFL  329 (493)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~  329 (493)
                                                +.++.    ++.+|+++.+......++.+..........+++..+..|+|+.+.
T Consensus       188 --------------------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  237 (382)
T PRK10091        188 --------------------------GLREQ----FHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSM  237 (382)
T ss_pred             --------------------------CHHHH----HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence                                      00000    122345554443322222111111111112334455589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHh
Q 011112          330 GTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFM  409 (493)
Q Consensus       330 gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  409 (493)
                      ++......++.+++.++.+++.||.++|+.+..+..+..++.+......         +.....+...............
T Consensus       238 ~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~  308 (382)
T PRK10091        238 TFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG---------GMKTASLIFAFICCAGLFALSA  308 (382)
T ss_pred             HHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHhhhH
Confidence            9988888899999999999999999999988887776655432211111         1111111111111111111122


Q ss_pred             HHHH-HHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHh
Q 011112          410 PFLI-LSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASS  452 (493)
Q Consensus       410 ~~~~-~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~  452 (493)
                      |... ...+..|++.++..  ..++..++|..+||.++|.+.|.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~  350 (382)
T PRK10091        309 PLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTL  350 (382)
T ss_pred             HHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHc
Confidence            3332 33444455555554  34667889999999999999986

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.95  E-value=1.6e-26  Score=235.01  Aligned_cols=368  Identities=17%  Similarity=0.082  Sum_probs=239.5

Q ss_pred             HHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHH
Q 011112           20 YFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLIL   97 (493)
Q Consensus        20 ~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~   97 (493)
                      |+.+.++. ..... .|.+++++|.|..+.|+..+++.++..+ .+++|+++||+     +||+.+..+.++..++...+
T Consensus         3 ~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~~~~~~~~~   76 (399)
T TIGR00893         3 TVINYLDRANLSFA-APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-----GARKTLAVFIVIWGVFTGLQ   76 (399)
T ss_pred             ehHHHHHHHhhhHh-HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-----CcceeeHHHHHHHHHHHHHH
Confidence            34444553 33333 4557888999999999999999998877 79999999995     56677778888888887777


Q ss_pred             hhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHH
Q 011112           98 GLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDR  177 (493)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~  177 (493)
                      ++.+    +++.+++.|++.|++.+...+...+++.|..+   +++|++.+++......+|..+|+.+++.+.++.+||+
T Consensus        77 ~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  149 (399)
T TIGR00893        77 AFAG----AYVSLYILRVLLGAAEAPFFPGIILIVASWFP---ASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQW  149 (399)
T ss_pred             HHHc----CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCC---HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchH
Confidence            7765    57788899999999999999999999999884   5899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhh
Q 011112          178 IFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFK  256 (493)
Q Consensus       178 ~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      .|++.+++.++..+.. ++.||++++.+...+     +++.. ..+....+...   ++        ++           
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~---~~--------~~-----------  201 (399)
T TIGR00893       150 AFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTE-----EEKYI-VVGGLLAEQQG---KG--------PS-----------  201 (399)
T ss_pred             HHHHHHHHHHHHHHHhhheecCCCCccccCCH-----HHHhh-cchhhcccccc---cc--------cc-----------
Confidence            9998887766655544 345655432211000     00000 00000000000   00        00           


Q ss_pred             hhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHH
Q 011112          257 IRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVG  336 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~  336 (493)
                                           ++.....++.+|+|+++...+..++............+.|..+..|+|+.+.+......
T Consensus       202 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (399)
T TIGR00893       202 ---------------------TPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLP  260 (399)
T ss_pred             ---------------------CCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHH
Confidence                                 00001234456777766655444443333332333345566677899999999988888


Q ss_pred             HHHHHHHHHHHHHHHhcCChhH--HHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHH
Q 011112          337 WVGLMLGTYTYNGYLKRLKLRR--ILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLIL  414 (493)
Q Consensus       337 ~~~~~l~~~~~~~~~~~~~~r~--~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~  414 (493)
                      .++.+++.++.+++.||.++|+  ....... ..+..+.........+.   .+.....+....+...... ...+..++
T Consensus       261 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~  335 (399)
T TIGR00893       261 GIVGFIGMILGGRLSDLLLRRGKSLVFARKT-AIIAGLVLSLLMFATNY---VNIPYAALALVALGFFGLG-AGAIGWAL  335 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHhchh-hhhHHHHH
Confidence            8888999999999999998885  1111111 11110000000000000   0111111111111111111 23344678


Q ss_pred             HhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          415 SGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       415 ~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ..|..|++.|++++|+++.+.++|..+++.+.|.+.+..|
T Consensus       336 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       336 ISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             HHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence            9999999999999999999999999999999999998765

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.95  E-value=2.6e-25  Score=232.41  Aligned_cols=356  Identities=13%  Similarity=0.021  Sum_probs=220.0

Q ss_pred             HHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHH
Q 011112           33 VSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLI  111 (493)
Q Consensus        33 ~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~  111 (493)
                      ..|+++++ |.|.++.|+..+.+.+++.+ +|++|+++||+     +||+.++.+.++.+++.+.+++.+....+++.++
T Consensus        51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-----g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  124 (452)
T PRK11273         51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF  124 (452)
T ss_pred             hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-----CCchhHHHHHHHHHHHHHHHHhhhcccccHHHHH
Confidence            34567777 99999999999999999987 89999999995     5677888888888888877776532223466778


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHH-HHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q 011112          112 VLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGG-ICGSLLGGYALTNIEIDRIFLLFTVLPAIQL  190 (493)
Q Consensus       112 ~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~-~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~  190 (493)
                      +.|++.+++.+...++....+.|..   |+++|++++|+++.+..+|. ..+++++..+....+||+.|++.+++.++..
T Consensus       125 ~~~~l~gi~~g~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~  201 (452)
T PRK11273        125 VLLFLCGWFQGMGWPPCGRTMVHWW---SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVA  201 (452)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHhC---ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            8899999988887777777887876   45889999999999999886 4566654444344599999999887666654


Q ss_pred             H-HhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCch
Q 011112          191 L-SCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPL  269 (493)
Q Consensus       191 i-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (493)
                      + ..+++||++++...+++    +|.+  +        +.....++     ...++       .                
T Consensus       202 ~l~~~~~~~~~~~~~~~~~----~~~~--~--------~~~~~~~~-----~~~~~-------~----------------  239 (452)
T PRK11273        202 LFAFAMMRDTPQSCGLPPI----EEYK--N--------DYPDDYNE-----KHEQE-------L----------------  239 (452)
T ss_pred             HHHHHHccCCHhhcCCCCh----hhhh--h--------cccccccc-----ccCCC-------c----------------
Confidence            4 34567776543210000    0000  0        00000000     00000       0                


Q ss_pred             hHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011112          270 VIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNG  349 (493)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~  349 (493)
                            +.++.++  ...+|+|.+|...+..++.+..........|.|.++..|++..+.+....+..++.+++.++.++
T Consensus       240 ------~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~  311 (452)
T PRK11273        240 ------TAKQIFM--QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW  311 (452)
T ss_pred             ------cHHHHHH--HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  1122111  23567888776554443323222222334466777778999888888877777888889999999


Q ss_pred             HHhcC--ChhHHHHH-HHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHH
Q 011112          350 YLKRL--KLRRILLL-TQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGT  426 (493)
Q Consensus       350 ~~~~~--~~r~~l~~-~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt  426 (493)
                      +.||.  ++|+...+ ...+..++ ++.......       .........................++..|.+|++.+|+
T Consensus       312 l~dr~~~~r~~~~~~~~~~l~~~~-~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~  383 (452)
T PRK11273        312 MSDKVFRGNRGATGVFFMTLVTIA-TIVYWLNPA-------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGT  383 (452)
T ss_pred             HHHHHccCCcchHHHHHHHHHHHH-HHHHHHhcc-------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhh
Confidence            99998  44433222 11222221 111111100       111111111111111100011112245678999999999


Q ss_pred             HHHHHHHHHhhhhhh-hHhHHHHhHHhhcC
Q 011112          427 LFALFMSISNFGSTV-GSFFGAGLASSLSI  455 (493)
Q Consensus       427 ~~gl~~~~~~lg~~~-~~~i~g~l~~~~g~  455 (493)
                      ++|+.++..++|+.+ +|.++|.+.|++|+
T Consensus       384 ~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~  413 (452)
T PRK11273        384 AAGFTGLFGYLGGSVAASAIVGYTVDFFGW  413 (452)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhcc
Confidence            999999999998765 79999999998764

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.95  E-value=7.7e-25  Score=231.18  Aligned_cols=370  Identities=16%  Similarity=0.105  Sum_probs=226.5

Q ss_pred             hHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhh----HHHH--HHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112           11 SFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSA----SQFV--SAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus        11 ~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~----~g~~--~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      +..++..+.+++++++..+.....+++.++++.+..+    ++.+  .++.++++.+ ++++|+++||+     +||+.+
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-----Grr~~l   90 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-----GRQKIL   90 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHH
Confidence            3444556777889998633344456778888643322    2221  3556677777 68999999995     788899


Q ss_pred             HHHHHHHHHHHHHHhhcccchh----hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILGLNAFFRS----STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGG  159 (493)
Q Consensus        84 i~~~~l~~~~~~~~~~~~~~~~----~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~  159 (493)
                      ..+.+++.++.++++++++...    ....++++|+++|++.+...+...+++.|..   |+++||+..++...+..+|.
T Consensus        91 ~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~---p~~~Rg~~~~~~~~~~~~G~  167 (490)
T PRK10642         91 AITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYS---PDRKRGFMGSWLDFGSIAGF  167 (490)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhC---CCCCCcHHHHHHHHHHHHHH
Confidence            9999999999999998874211    0123789999999999999999999999988   45899999999988888888


Q ss_pred             HHHHHHHHHhh--------ccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCc
Q 011112          160 ICGSLLGGYAL--------TNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGF  231 (493)
Q Consensus       160 ~lg~~i~g~l~--------~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (493)
                      .+|+.+...+.        +++|||++|++.+++.++..+....+||+++..+.+++   .++.+    .+.  .++   
T Consensus       168 ~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~---~~~~~----~~~--~~~---  235 (490)
T PRK10642        168 VLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDK---LEQGD----REG--LQD---  235 (490)
T ss_pred             HHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHh---hhhhc----ccc--ccc---
Confidence            88876665442        36799999998775544333344567887654321100   00000    000  000   


Q ss_pred             cccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccc-hHHHHHHHHHHHhcccCC
Q 011112          232 SEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPE-ILRPMAWFFLAHVAVPNL  310 (493)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~l~~~~~~~~  310 (493)
                                 .++       .                      +.++.++.      +++ ........++........
T Consensus       236 -----------~~~-------~----------------------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  269 (490)
T PRK10642        236 -----------GPK-------V----------------------SFKEIATK------HWRSLLTCIGLVIATNVTYYML  269 (490)
T ss_pred             -----------ccc-------C----------------------CHHHHHHH------hHHHHHHHHHHHHHHHHHHHHH
Confidence                       000       0                      11211111      111 111111111111111122


Q ss_pred             CcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCc
Q 011112          311 STVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDK  390 (493)
Q Consensus       311 ~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~  390 (493)
                      ....+.|+++.+|++..+.++......++.+++.++.+++.||+|+|+.+..+.++..+..........       ....
T Consensus       270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-------~~~~  342 (490)
T PRK10642        270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN-------SNVI  342 (490)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-------CCCH
Confidence            223455666668999877777777778888899999999999999999887776544332221111111       0111


Q ss_pred             eEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhh
Q 011112          391 TMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSL  453 (493)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~  453 (493)
                      ........+..+...........+..+.+|++.|+++.|..+.+..+++.++|.+.+.+.+..
T Consensus       343 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~  405 (490)
T PRK10642        343 GLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST  405 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111111111111111222233456778999999999999877777788888999999888754

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.95  E-value=6.9e-25  Score=223.46  Aligned_cols=350  Identities=14%  Similarity=0.180  Sum_probs=233.9

Q ss_pred             hHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHH
Q 011112           11 SFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVL   89 (493)
Q Consensus        11 ~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l   89 (493)
                      +..+.+....+...+..-...+..|.+.+++|.|+++.++..+.+.++..+ ++++|+++||+     +||+.+..+.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-----g~r~~~~~~~~~   79 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-----GRRPVLLLGLFI   79 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-----CChHHHHHHHHH
Confidence            344444444555555542233344566788999999999999999998877 79999999995     577888888888


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011112           90 SLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYA  169 (493)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l  169 (493)
                      ..++.+.+...+    +.+.+.+.|++.+++.+...+..++++.|..+   +++|+++.++......+|..+|+.+++++
T Consensus        80 ~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  152 (385)
T TIGR00710        80 FALSSLGLALSN----NIETLLVLRFVQAFGASAGSVISQALVRDIYP---GEELSRIYSILMPVLALAPAVAPLLGGYI  152 (385)
T ss_pred             HHHHHHHHHHHc----cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887777664    56678889999999999999999999999884   58899999999999999999999999999


Q ss_pred             hccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhh
Q 011112          170 LTNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKK  248 (493)
Q Consensus       170 ~~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (493)
                      .++.+||++|++.+++.++..+.. ++.||+++++++          +                 +              
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----------------~--------------  191 (385)
T TIGR00710       153 LVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEAR----------I-----------------Q--------------  191 (385)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc----------C-----------------C--------------
Confidence            999999999998887666555443 445665432210          0                 0              


Q ss_pred             hhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHH
Q 011112          249 NQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASF  328 (493)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~  328 (493)
                                                  .++..++.++.+|+|+++...+...+............+.+..+..|+++.+
T Consensus       192 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  243 (385)
T TIGR00710       192 ----------------------------ISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSV  243 (385)
T ss_pred             ----------------------------HHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHH
Confidence                                        0001122345567777765443322222222112222345555668999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhH
Q 011112          329 LGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKF  408 (493)
Q Consensus       329 ~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  408 (493)
                      .+.+.....++.+++.++.+++.||+++|+.+..+..+..++.+....... ..    .+..........+.........
T Consensus       244 ~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~g~~~~~~~  318 (385)
T TIGR00710       244 FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI-LG----LGSWAMIIGPMMFVGIGNSMIS  318 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-hc----cchHHHHHHHHHHHHHHHHHHH
Confidence            999888888899999999999999999999888776666554322211110 00    0111111111111212222222


Q ss_pred             hHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHH
Q 011112          409 MPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGA  447 (493)
Q Consensus       409 ~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g  447 (493)
                      ........+..| +.++++.++.++..+.++.+.+.+.+
T Consensus       319 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       319 SIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            223455666665 67899999999888765555544444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.95  E-value=2.8e-25  Score=233.86  Aligned_cols=388  Identities=14%  Similarity=0.119  Sum_probs=257.0

Q ss_pred             HHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHH
Q 011112           13 LWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLS   90 (493)
Q Consensus        13 ~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~   90 (493)
                      +..+.+.+++..++. +.+..++ .+.+++|.|.++.++..+.+.++..+ .|++|+++||+     +||+.++.+.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~   77 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-----GTRRLFLISTFAF   77 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-----CcHHHHHHHHHHH
Confidence            445566678888875 5555554 55778999999999999999998877 79999999995     6788888999998


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011112           91 LVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL  170 (493)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~  170 (493)
                      .++.+.++..+    +++.+++.|+++|++.+...+...+++.|..+   +++|+++.+++.....+|..+|+.+++++.
T Consensus        78 ~~~~~~~~~~~----~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~---~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        78 TLGSLLCGVAP----NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYP---PEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             HHHHHHHhCcC----CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence            88888887765    57788999999999999999999999999984   589999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhh
Q 011112          171 TNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKN  249 (493)
Q Consensus       171 ~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (493)
                      ++.+||+.|++.+.+.++..+.. ++.||+++..+++.|..                   +..    .........    
T Consensus       151 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-------------------g~~----l~~~~~~~~----  203 (485)
T TIGR00711       151 ENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFL-------------------GLL----LLSVGLGSL----  203 (485)
T ss_pred             cCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHH-------------------HHH----HHHHHHHHH----
Confidence            99999999999887766555433 44666443221110000                   000    000000000    


Q ss_pred             hhhhhhhhhhccCCCCCCch--------------hHHHHhhHH--HHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcc
Q 011112          250 QKKRMFKIRKSQIPEKNNPL--------------VIQWFHSLK--AAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTV  313 (493)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  313 (493)
                          .....+ .....|.+.              .....++.+  +... -.+.+|+|.++...+..++...........
T Consensus       204 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (485)
T TIGR00711       204 ----LYGLSE-GPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLV-DLRLFKYRNFTIGCVYMSLLGLGLYGSFYL  277 (485)
T ss_pred             ----HHHHhh-CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCcc-CHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence                000000 000000000              000000000  0001 124677887766554444333322222333


Q ss_pred             eeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEe
Q 011112          314 MFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMV  393 (493)
Q Consensus       314 ~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~  393 (493)
                      .+.|.++..|+|+.+.|+...+..++.+++.++.+++.||.++|+.+..+.++..++.........  +    .......
T Consensus       278 ~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~--~----~~~~~~~  351 (485)
T TIGR00711       278 LPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFT--P----DTPFLAI  351 (485)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCC--C----CCCHHHH
Confidence            466777778999999999988888999999999999999999999988887766654322110110  0    0111111


Q ss_pred             eehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHh
Q 011112          394 LYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASS  452 (493)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~  452 (493)
                      .....+..+..+....|......+..|++++|+++|+.++..++|+.+|+.+.+.+.+.
T Consensus       352 ~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       352 ALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11112222333334455666677889999999999999999999999999998888763

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.95  E-value=4.6e-25  Score=225.50  Aligned_cols=342  Identities=14%  Similarity=0.056  Sum_probs=231.4

Q ss_pred             HHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchh----HHHHHHHH
Q 011112           16 ICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIP----YLVISTVL   89 (493)
Q Consensus        16 ~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~----~ii~~~~l   89 (493)
                      +...||...+. ++....++.++ +++|.|.+++|...+++.+...+ +|++|+++||.     +|+.    .+..+..+
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~l   82 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-----NHIIIALRLLALASAI   82 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHHH
Confidence            45556666654 35555566665 56999999999999998887765 89999999985     3321    22222211


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011112           90 SLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYA  169 (493)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l  169 (493)
                      ..+  ..+...    ++++.+++.|.+++.+.+...+..+++..+.     .++|++..|......++|.++|+.++|++
T Consensus        83 ~~~--~~~~~~----~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-----~~~~~~~~g~~~~~~slG~~~g~~l~g~l  151 (382)
T TIGR00902        83 FAA--AFSAGA----HNAWLLFIAIGLFALFFSAGMPIGDALANTW-----QKQFGLDYGKVRLIGSAAFIIGSALFGGL  151 (382)
T ss_pred             HHH--HHHHhh----hhHHHHHHHHHHHHHHHccchhHHHHHHHHH-----HHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            111  122222    2577888889888887777777788886543     36789999999999999999999999999


Q ss_pred             hccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhh
Q 011112          170 LTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKN  249 (493)
Q Consensus       170 ~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (493)
                      .+++|||..|++.+... +..+..+.++|++++++.        + +           +.    +          +    
T Consensus       152 ~~~~g~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~--------~-~-----------~~----~----------~----  192 (382)
T TIGR00902       152 IGMFDEQNILAILTAGL-AFMLIGFLIKPTIPPKDA--------I-P-----------ED----E----------S----  192 (382)
T ss_pred             HHHcChhHHHHHHHHHH-HHHHHHHHcCCCCCCCcc--------c-c-----------cc----c----------c----
Confidence            99999999998876442 222222333333211100        0 0           00    0          0    


Q ss_pred             hhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHH
Q 011112          250 QKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFL  329 (493)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~  329 (493)
                         .                      .    .++..+.+|+|+++...+..++.........+..+.|.++ .|.++.+.
T Consensus       193 ---~----------------------~----~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~  242 (382)
T TIGR00902       193 ---Q----------------------G----DSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASAT  242 (382)
T ss_pred             ---c----------------------c----chhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHH
Confidence               0                      0    0123456788888776655554344333333334556555 89999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHh
Q 011112          330 GTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFM  409 (493)
Q Consensus       330 gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  409 (493)
                      |.....+.++.+++..+.+|+.||++.|+.+.++.++..+..... ...         ++.+.++....++....+....
T Consensus       243 g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~-~~~---------~~~~~~~~~q~l~g~~~~~~~~  312 (382)
T TIGR00902       243 GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII-GAI---------EAFPLIFLLQILHCGTFAVCHL  312 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH-HhH---------hhHHHHHHHHHHHHHHHHHHHH
Confidence            998778999999999999999999999999988888776653221 111         2222223334556666666666


Q ss_pred             HHHHHHhhcCCCCchHHHHHHHHH-HHhhhhhhhHhHHHHhHHhhc
Q 011112          410 PFLILSGQLCPPGIEGTLFALFMS-ISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       410 ~~~~~~~~~~p~~~~gt~~gl~~~-~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      +.+.++.+. |+++++++++++++ ...+|..+++.++|.+.|++|
T Consensus       313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g  357 (382)
T TIGR00902       313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG  357 (382)
T ss_pred             HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            677888887 99999999999875 456899999999999999875

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.95  E-value=1e-24  Score=224.61  Aligned_cols=339  Identities=17%  Similarity=0.101  Sum_probs=228.5

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhh
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSS  106 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~  106 (493)
                      .....+++ +.+++|.|..+.++..+.+.++..+ +++.|+++||+     +||+.++.+..+..++...+...+    +
T Consensus        31 ~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~----~  100 (406)
T PRK15402         31 MIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-----GRRPVMLAGVAFFILTCLAILLAQ----S  100 (406)
T ss_pred             hHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHHc----c
Confidence            44444444 5778999999999999999998887 78999999995     677788888888888877776654    4


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Q 011112          107 TWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLP  186 (493)
Q Consensus       107 ~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~  186 (493)
                      ++.+++.|++++++.+...+...+.+.|..+   +++|++..++......+|..+||.+++.+.++.+||+.|++.+++.
T Consensus       101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~  177 (406)
T PRK15402        101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFE---EADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALA  177 (406)
T ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence            6778889999999988887788888888874   4788888999888888999999999999999999999999888776


Q ss_pred             HHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCC
Q 011112          187 AIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEK  265 (493)
Q Consensus       187 ~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (493)
                      ++..+.. +..||++++.++          +                 +                               
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~----------~-----------------~-------------------------------  199 (406)
T PRK15402        178 ALSFFGLWRAMPETAGRVGE----------K-----------------L-------------------------------  199 (406)
T ss_pred             HHHHHHHHHhCCCCCccccc----------c-----------------c-------------------------------
Confidence            6555433 345665432210          0                 0                               


Q ss_pred             CCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHH
Q 011112          266 NNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTY  345 (493)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~  345 (493)
                                +.++..+++.+.+++|+++...+..++............+.+..+.+|+++.+.|.......++.+++.+
T Consensus       200 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~  269 (406)
T PRK15402        200 ----------SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNL  269 (406)
T ss_pred             ----------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence                      0011112334567788776654433322221111112234455566899999999886666778889999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehh-HHHHHHHHhhHhHHHHHHhhcCCCCch
Q 011112          346 TYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGS-ALVDAVNQFKFMPFLILSGQLCPPGIE  424 (493)
Q Consensus       346 ~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~  424 (493)
                      +.+++.||.++|+.+..+.++..++.... .......     +....++... .+..........+.+... ...+++++
T Consensus       270 ~~g~l~~r~~~~~~~~~~~~~~~~g~~~~-~~~~~~~-----~~~~~~~~~~~~~~g~g~~~~~~~~~~~~-~~~~~~~~  342 (406)
T PRK15402        270 TLARLTSRRPLRSLIRMGLWPMVAGLLLA-ALATVIS-----SHAYLWLTAGLSLYAFGIGLANAGLYRLT-LFSSDVSK  342 (406)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHHHHcc-----cccHHHHHHHHHHHHHHHHHHhhhHHHHH-hhhccccc
Confidence            99999999999998888776655443221 1111000     1111111111 111121122222223333 34456899


Q ss_pred             HHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          425 GTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       425 gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      |+..++++..+.++..+|+.+++.+.+..+
T Consensus       343 g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~  372 (406)
T PRK15402        343 GTVSAAMGMLSMLIFTVGIELSKHAYLGGG  372 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence            999999999999999999998888876543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.95  E-value=6.1e-25  Score=225.67  Aligned_cols=373  Identities=15%  Similarity=0.123  Sum_probs=236.6

Q ss_pred             HHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHH
Q 011112           15 LICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLV   92 (493)
Q Consensus        15 ~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~   92 (493)
                      .+...+++..+.. +....++.++++++|.|+++.|+..+++.+++.+ +|+.|+++||+     +||+.++.+.++..+
T Consensus        19 ~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-----g~r~~l~~~~~~~~~   93 (399)
T PRK05122         19 SIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-----GPKKAVVFGLCGCAL   93 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-----CCcchHHHHHHHHHH
Confidence            3566667777764 6667777778889999999999999999999887 89999999995     677788888877766


Q ss_pred             HHHHHhhcccc----hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011112           93 PWLILGLNAFF----RSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGY  168 (493)
Q Consensus        93 ~~~~~~~~~~~----~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~  168 (493)
                      +...+......    ..+++.+++.|+++|++.+...+...+++.|..+   +++|++++++......+|.++|+.+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~g~~l~~~  170 (399)
T PRK05122         94 SGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVG---ALHTGRVISWNGIATYGALAIGAPLGVL  170 (399)
T ss_pred             HHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcC---hhhhccchhhhhhhhhHHHHHHHHHHHH
Confidence            65554433211    1245578899999999999988888888888874   5889999999999999999999999999


Q ss_pred             hhccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhh
Q 011112          169 ALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKK  248 (493)
Q Consensus       169 l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (493)
                      +.++.||++.+++.+++.++..+.....||+++++          +                   +          +   
T Consensus       171 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-------------------~----------~---  208 (399)
T PRK05122        171 LYHWGGLAGLGLLIMLLALLGLLLARPRPAVPPVK----------G-------------------E----------R---  208 (399)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCCCC----------c-------------------c----------c---
Confidence            99999999998876654433222222112211100          0                   0          0   


Q ss_pred             hhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHH
Q 011112          249 NQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASF  328 (493)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~  328 (493)
                          .                      +.++.++..+.   ....  ..+..+    .........+.|..+ .|++  +
T Consensus       209 ----~----------------------~~~~~~~~~~~---~~~~--~~~~~~----~~~~~~~~~~~~~~~-~~~~--~  250 (399)
T PRK05122        209 ----L----------------------PFRRVLGRVWP---YGMG--LALASI----GFGTIATFITLYYAA-RGWD--G  250 (399)
T ss_pred             ----h----------------------hHHHHHHHHHH---HHHH--HHHHHH----HHHHHHHHHHHHHHH-cccc--c
Confidence                0                      01111111110   0000  001111    000011111223322 3543  3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhH
Q 011112          329 LGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKF  408 (493)
Q Consensus       329 ~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  408 (493)
                      .+.......++.+++.++.+++.||.++|+.+..+..+..+.... ....         ++.+..+....+..+.....+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~l~G~~~~~~~  320 (399)
T PRK05122        251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLL-LWLA---------PSPWMALIGAALTGFGFSLVF  320 (399)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH-HHHh---------ccHHHHHHHHHHHHHhHHHHH
Confidence            444445566777888899999999999999887776665554221 1111         111111111122222222222


Q ss_pred             hHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhh-cccCC
Q 011112          409 MPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLF-LIPKG  487 (493)
Q Consensus       409 ~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~  487 (493)
                      ........+..|++.+|+++|+++...++|..+++.+.|.+.+..|+        ...+.+..++.+++++... +.+|.
T Consensus       321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        321 PALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGY--------PSIFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence            22345677889999999999999999999999999999999887653        2344445555555555543 44566


Q ss_pred             CCCCCC
Q 011112          488 ATGVPA  493 (493)
Q Consensus       488 ~~~~~~  493 (493)
                      ++.+|.
T Consensus       393 ~~~~~~  398 (399)
T PRK05122        393 PRAVPE  398 (399)
T ss_pred             cccCCC
Confidence            677773

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.94  E-value=1.2e-24  Score=223.87  Aligned_cols=357  Identities=14%  Similarity=0.141  Sum_probs=232.4

Q ss_pred             ChhhhhhhchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCC
Q 011112            1 MKQLKNVFGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRK   78 (493)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~   78 (493)
                      |.+++|.-|....+ +....++..+. ......+++++++++|.|..++|...+...++..+ +|++|+++||+     +
T Consensus         1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-----g   74 (400)
T PRK11646          1 MSRVSQARNLGKYF-LLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-----G   74 (400)
T ss_pred             CCCCcccccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-----C
Confidence            44555544433333 33555555554 35556667778888999999999999988887765 89999999995     5


Q ss_pred             chhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHH
Q 011112           79 RIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFG  158 (493)
Q Consensus        79 rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G  158 (493)
                      ||+.++.+..+..++.+.+...+    +.+.+.+.|++++++.+...++.++++.|..+   +++|+++.|+.....++|
T Consensus        75 ~k~~l~~~~~~~~~~~~~~~~~~----~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~g  147 (400)
T PRK11646         75 AKPMIVTGMLMRAAGFATMAIAH----EPWLLWLSCILSGLGGTLFDPPRTALVIKLIR---PHQRGRFFSLLMMQDSAG  147 (400)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHH
Confidence            78888899998888888777654    46778889999999988888888899888874   589999999999999999


Q ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchh
Q 011112          159 GICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYN  237 (493)
Q Consensus       159 ~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (493)
                      ..+||.+++++. ..+||+.|++.+++.++..+.. ++.||++.+..                             +   
T Consensus       148 ~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------------------~---  194 (400)
T PRK11646        148 AVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLSTV-----------------------------R---  194 (400)
T ss_pred             HHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccccc-----------------------------c---
Confidence            999999999998 6799999998886655554332 34454321100                             0   


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeee
Q 011112          238 ISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYY  317 (493)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  317 (493)
                                     .                      +.++   .+.+.+++|+++...+..+.............+.|
T Consensus       195 ---------------~----------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  234 (400)
T PRK11646        195 ---------------T----------------------PVRE---GMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIM  234 (400)
T ss_pred             ---------------h----------------------hhHH---HHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                           0                      0011   12234566665543322221111111111223555


Q ss_pred             eeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeeh
Q 011112          318 QTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLK-RLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYG  396 (493)
Q Consensus       318 ~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~-~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~  396 (493)
                      .++..+ ++.+.+.......++...+....+++.| |.+.++.+..+.++..++.+. +...         ++...+...
T Consensus       235 ~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-l~~~---------~~~~~~~~~  303 (400)
T PRK11646        235 VNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFP-IGMV---------SNLQQLFTL  303 (400)
T ss_pred             HHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH-HHHh---------hhHHHHHHH
Confidence            555434 6677887766555555444444455554 556666666665555444221 1111         111111111


Q ss_pred             hHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          397 SALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ..+..........+..+++.+..|++++|+++|+++...++|..+||.++|.+.|..|
T Consensus       304 ~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~  361 (400)
T PRK11646        304 ICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK  361 (400)
T ss_pred             HHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence            1111222222233346788899999999999999999999999999999999999753

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.94  E-value=1e-25  Score=228.29  Aligned_cols=369  Identities=16%  Similarity=0.086  Sum_probs=237.9

Q ss_pred             HHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHH
Q 011112           19 IYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLIL   97 (493)
Q Consensus        19 ~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~   97 (493)
                      .|+...++........|++++++|.|..+.|+..++..++..+ ++++|+++||+     +||+.++.+.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~   77 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-----NPRVFLPIGLILCAIVNLFF   77 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-----CCeehhHHHHHHHHHHHHHH
Confidence            4555555542223334566888999999999999999998887 79999999995     67778888888888888887


Q ss_pred             hhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHH-HHHHHhhccccHH
Q 011112           98 GLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGS-LLGGYALTNIEID  176 (493)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~-~i~g~l~~~~gw~  176 (493)
                      .+.+    +++.+++.|++.+++.+...+..++++.|..+   +++|+++.++......+|..+++ .+++.+.++.+||
T Consensus        78 ~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  150 (379)
T TIGR00881        78 GFST----SLWVMAALWALNGIFQGMGWPPCGRTVTKWFS---RSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWH  150 (379)
T ss_pred             HHhh----hHHHHHHHHHHHHhhccccCCchHHHHHHhcC---HhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCch
Confidence            7765    56788899999999999988899999999884   48899999999999999999999 5777787888999


Q ss_pred             HHHHHHHHHHHHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhh
Q 011112          177 RIFLLFTVLPAIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMF  255 (493)
Q Consensus       177 ~~f~~~~~~~~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (493)
                      +.|++.+++.++..+. .++.||+++..+.+.+    ++.+ .++.+     +..   ++      .++++      .  
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~-----~~~---~~------~~~~~------~--  203 (379)
T TIGR00881       151 WVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPA----EEMP-NEEPD-----GDA---EK------KEEEL------T--  203 (379)
T ss_pred             hHHHHHHHHHHHHHHHHheeeCCCccccccCcc----ccCc-ccccc-----ccc---cc------ccccc------c--
Confidence            9999888776665544 3456665443211100    0000 00000     000   00      00000      0  


Q ss_pred             hhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHH
Q 011112          256 KIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVV  335 (493)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~  335 (493)
                                          ..+   ....+.+++|.++...+..++.+..........+.|..+..|+++.+.+.....
T Consensus       204 --------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  260 (379)
T TIGR00881       204 --------------------KKQ---IFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTL  260 (379)
T ss_pred             --------------------chH---HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence                                011   122345677877665544333333222233334556666789999999998888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCh-hHH-HHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHH
Q 011112          336 GWVGLMLGTYTYNGYLKRLKL-RRI-LLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLI  413 (493)
Q Consensus       336 ~~~~~~l~~~~~~~~~~~~~~-r~~-l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~  413 (493)
                      ..++.+++.++.+++.||... |+. +...........+.......       ..+........................
T Consensus       261 ~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~  333 (379)
T TIGR00881       261 YELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP-------AANPLMDLICLFALGFLVYGPQMLIGV  333 (379)
T ss_pred             HHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc-------chhHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            888889999999999997532 222 22111111111111111100       011111111111111111111222345


Q ss_pred             HHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCC
Q 011112          414 LSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       414 ~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                      +..|..|++.||+++|++++..++|..+++.+.|.+.|.+|+.
T Consensus       334 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  376 (379)
T TIGR00881       334 IASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWA  376 (379)
T ss_pred             HHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccc
Confidence            6889999999999999999999999999999999999988764

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.94  E-value=1.3e-24  Score=228.49  Aligned_cols=376  Identities=15%  Similarity=0.093  Sum_probs=235.3

Q ss_pred             hhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhh--------CCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCC
Q 011112            7 VFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKL--------KFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKG   76 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~--------g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g   76 (493)
                      .++.+..++..+..+..+++. .+.... +.+++++        |.+.++.++..+.+.++..+ ++++|+++||+    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~----   82 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTV-ESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF----   82 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhH-HHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence            456666676677778888875 555544 4456666        89999999999999999987 78999999995    


Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhcc--------cchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHH
Q 011112           77 RKRIPYLVISTVLSLVPWLILGLNA--------FFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQ  148 (493)
Q Consensus        77 ~~rr~~ii~~~~l~~~~~~~~~~~~--------~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~  148 (493)
                       +||+.++.+.++..++.+.+++..        ......+.+++.|+++|++.+...+...+++.|..+   +++||+++
T Consensus        83 -Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~---~~~rg~~~  158 (479)
T PRK10077         83 -GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAP---AHIRGKLV  158 (479)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCC---hhhhhHHH
Confidence             678888888888887777666521        111235567899999999999999999999999984   58899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh--------ccccHHHHHHHHHHHHHHHHHHhhccccccccchhh--hc-ccc-cCCCc
Q 011112          149 SLSWLAMAFGGICGSLLGGYAL--------TNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVL--KE-FSS-SNGYH  216 (493)
Q Consensus       149 g~~~~~~~~G~~lg~~i~g~l~--------~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~--~~-~~~-~~~~~  216 (493)
                      ++......+|..+++++++.+.        ++.|||+.|++.++..++..+..+++||++++...+  .+ +.. .++.+
T Consensus       159 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~  238 (479)
T PRK10077        159 SFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIM  238 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHc
Confidence            9999999999999988876553        457999999988777666555566789887543110  00 000 00000


Q ss_pred             ccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHH-
Q 011112          217 QVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILR-  295 (493)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  295 (493)
                         +       +     ++        .+       .                   ..++.++..+.-  ..+.+..+. 
T Consensus       239 ---~-------~-----~~--------~~-------~-------------------~~~~~~~~~~~~--~~~~~~~~~~  267 (479)
T PRK10077        239 ---G-------N-----TL--------AT-------Q-------------------ALQEIKHSLDHG--RKTGGKLLMF  267 (479)
T ss_pred             ---C-------C-----hh--------HH-------H-------------------HHHHHHHHHHHh--hhhhhhhcch
Confidence               0       0     00        00       0                   000011111000  000011100 


Q ss_pred             ---HHHHHHH--HHhcccCCCcc---eeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011112          296 ---PMAWFFL--AHVAVPNLSTV---MFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGL  367 (493)
Q Consensus       296 ---~~~~~~l--~~~~~~~~~~~---~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~  367 (493)
                         .....+.  ........+..   .+.+ .+..|++....++......+..+++.++.+++.||+++|+.+..+.++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~  346 (479)
T PRK10077        268 GVGVIVIGVMLSVFQQFVGINVVLYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGM  346 (479)
T ss_pred             hHHHHHHHHHHHHHHHHhChhHHHHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHH
Confidence               0110000  01111111111   1122 2347888766666666677788888999999999999999999888877


Q ss_pred             HHHhhhhhhheeccccccCccCceEeeehh-HHHHHHHHhhHhHH-HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhH
Q 011112          368 SILSFLDIVLVSRMNLTVGISDKTMVLYGS-ALVDAVNQFKFMPF-LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFF  445 (493)
Q Consensus       368 ~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i  445 (493)
                      .+..+........       +....+.... .+........+.|. .++++|..|++.|++++|+.+..++++..+++.+
T Consensus       347 ~v~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~  419 (479)
T PRK10077        347 AIGMFSLGTAFYT-------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWT  419 (479)
T ss_pred             HHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7654322111110       1111111011 11111111223343 5789999999999999999999999999998877


Q ss_pred             HHHhH
Q 011112          446 GAGLA  450 (493)
Q Consensus       446 ~g~l~  450 (493)
                      .+.+.
T Consensus       420 ~p~~~  424 (479)
T PRK10077        420 FPMMD  424 (479)
T ss_pred             hHHHH
Confidence            76555

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.94  E-value=7.3e-25  Score=224.87  Aligned_cols=354  Identities=15%  Similarity=0.130  Sum_probs=234.9

Q ss_pred             HHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHH
Q 011112           32 AVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHL  110 (493)
Q Consensus        32 ~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l  110 (493)
                      +..|.+++|+|+|..+.|+..+.+.+++.+ +|+.|+++||+     +||+.++.+..+++++.+.+++++    +++.+
T Consensus        30 ~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-----G~r~~l~~~~~l~~~~~~~~~~a~----~~~~l  100 (393)
T PRK09705         30 PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-----SERRSVAISLLLIAVGALMRELYP----QSALL  100 (393)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHCc----chHHH
Confidence            445566889999999999999999999987 79999999995     788899999999999999999886    46678


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHHH
Q 011112          111 IVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI-EIDRIFLLFTVLPAIQ  189 (493)
Q Consensus       111 ~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~-gw~~~f~~~~~~~~l~  189 (493)
                      ++.|+++|++.+...+...+++.+..   | ++|+++++.+..+.+.|..+|+.+++++.++. +||+.+.+.++..++.
T Consensus       101 l~~r~l~Gig~~~~~~~~~~~~~~~~---~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        101 LSSALLGGVGIGIIQAVMPSVIKRRF---Q-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HHHHHHHHhHHHHHhhhhhHHHHHHc---c-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            89999999999998888888777665   2 78999999999999999999999999998875 8999887766543333


Q ss_pred             HHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCch
Q 011112          190 LLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPL  269 (493)
Q Consensus       190 ~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (493)
                      .+..+...+++++.+         + +           +.               .                        
T Consensus       177 ~~~~~~~~~~~~~~~---------~-~-----------~~---------------~------------------------  196 (393)
T PRK09705        177 LFAWWWQSAREVASS---------H-K-----------TT---------------T------------------------  196 (393)
T ss_pred             HHHHHHHhcCCCccc---------c-C-----------CC---------------c------------------------
Confidence            222222221111110         0 0           00               0                        


Q ss_pred             hHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011112          270 VIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNG  349 (493)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~  349 (493)
                            +       ..+.+++|+.+......++............+.|..+ .|++..+.|.......++.+++.++.++
T Consensus       197 ------~-------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~  262 (393)
T PRK09705        197 ------T-------PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPA  262 (393)
T ss_pred             ------C-------CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence                  0       0011233443333322222222222222233455555 7999999999888888999999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcC-CCCchHHHH
Q 011112          350 YLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLC-PPGIEGTLF  428 (493)
Q Consensus       350 ~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~gt~~  428 (493)
                      +.||.++|+.+..+..+..++.... .....       .....+  . .+.....+...........+.. |++.+|+.+
T Consensus       263 l~~r~~~~~~~~~~~~l~~~~~~~~-~~~~~-------~~~~~~--~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~  331 (393)
T PRK09705        263 MARHQDRRKLLMLALVLQLVGFCGF-IWLPL-------QLPVLW--A-MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLV  331 (393)
T ss_pred             HHhhccchHHHHHHHHHHHHHHHHH-HHccc-------hHHHHH--H-HHHHHhccchHHHHHHHHHhhcCCHHHHHHHH
Confidence            9999999998888766555542221 11110       001111  0 1111111111122233445555 467899999


Q ss_pred             HHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhh-hhcccCCCCC
Q 011112          429 ALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAF-LFLIPKGATG  490 (493)
Q Consensus       429 gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~  490 (493)
                      |+.+++.+++..++|.+.|.+.|..|.    |   ...+.+.+++.++.... ..+.||++.+
T Consensus       332 g~~~~~~~~~~~~gp~~~G~l~~~~g~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (393)
T PRK09705        332 AFMQGIGFIIAGLAPWFSGVLRSISGN----Y---LMDWAFHALCVVGLMIITLRFAPARFPQ  387 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC----c---hHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            999999999999999999999998762    2   22334444444444433 3466666543

>TIGR00897 2A0118 polyol permease family

Probab=99.94  E-value=4.9e-24  Score=219.43  Aligned_cols=379  Identities=11%  Similarity=0.051  Sum_probs=233.4

Q ss_pred             HHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHH
Q 011112           15 LICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLV   92 (493)
Q Consensus        15 ~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~   92 (493)
                      ...+..++..+. +.....+++++ +++|.|+++.|+..+.+.+++.+ +|++|+++||+     +||+.+..+..+..+
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-----g~k~~l~~~~~~~~~   90 (402)
T TIGR00897        17 WGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-----GPLKTMMIGLLLWCV   90 (402)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHH
Confidence            345555554443 35555667776 46999999999999999998877 89999999995     677788888877777


Q ss_pred             HHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 011112           93 PWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGG-ICGSLLGGYALT  171 (493)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~-~lg~~i~g~l~~  171 (493)
                      +...+........+.+.+++.|+++|++.+...+...+.+.+..   |+++|++++|+.....++|. ++|+.+++++.+
T Consensus        91 ~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~  167 (402)
T TIGR00897        91 GHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNT---KQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP  167 (402)
T ss_pred             HHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            65544221100124566778999999988777666677777766   45899999999999999997 689999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhh
Q 011112          172 NIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQ  250 (493)
Q Consensus       172 ~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (493)
                      +.||+..++.......+..+.. ++.+|+++++++        +++                 +          +.    
T Consensus       168 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----------------~----------~~----  208 (402)
T TIGR00897       168 AFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHM--------QTR-----------------E----------KF----  208 (402)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhccCCCCCcccc--------cCC-----------------c----------ch----
Confidence            8897665554433222222222 334433221100        000                 0          00    


Q ss_pred             hhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHH
Q 011112          251 KKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLG  330 (493)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g  330 (493)
                        .                      +.+   +...+.+|+|+++...+..++............+.|.+ ++|+|..+.+
T Consensus       209 --~----------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~  260 (402)
T TIGR00897       209 --S----------------------ELG---KAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWL  260 (402)
T ss_pred             --h----------------------hHH---HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHH
Confidence              0                      111   12335677888766543333322222222223355554 4899998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH-HHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHh
Q 011112          331 TARVVGWVGLMLGTYTYNGYLKRLKLRRILLL-TQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFM  409 (493)
Q Consensus       331 l~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~-~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  409 (493)
                      .......++.+++.+..+++.||.++|+.+.. +.+...+.... +......   . ............+...... ...
T Consensus       261 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~-l~~~~~~---~-~~~~~~~~~~~~~~G~~~~-~~~  334 (402)
T TIGR00897       261 QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLA-LYYIPQH---F-GHSFAVALIIAIALGIFLA-GYV  334 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH-HHHHHHc---c-CCcHHHHHHHHHHHHHHHH-HHH
Confidence            87777788899999999999999998876642 22222222111 1111000   0 0111111111112222211 233


Q ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhcc
Q 011112          410 PFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLI  484 (493)
Q Consensus       410 ~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  484 (493)
                      |......+. +|+++|+++|+++...++++.++|.++|.+.|..|+        ...+.+.+++.++..+...++
T Consensus       335 ~~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~--------~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       335 PLAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGA--------IGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--------HHHHHHHHHHHHHHHHHHHHh
Confidence            444445554 566899999999999999999999999999998663        234445555565655554444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09952 shikimate transporter; Provisional

Probab=99.94  E-value=2.8e-24  Score=223.72  Aligned_cols=395  Identities=13%  Similarity=0.083  Sum_probs=236.1

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhh--CCCHhhHHHHHH-----HHHhhHhh-hhhhhhcccccccCCCC
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKL--KFSPSASQFVSA-----VAFFPWSI-KPLYGILSDCIPIKGRK   78 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~--g~s~~~~g~~~s-----~~~l~~~~-~~~~G~lsDr~~~~g~~   78 (493)
                      ++++..+...+.+++++++. ......+.++.+++  +.++. .++..+     +.++...+ +++.|+++||+     +
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-----G   92 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-----G   92 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-----c
Confidence            44555555666778888875 44333344556655  67776 455432     22233334 56789999995     6


Q ss_pred             chhHHHHHHHHHHHHHHHHhhcccchh----hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHH
Q 011112           79 RIPYLVISTVLSLVPWLILGLNAFFRS----STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLA  154 (493)
Q Consensus        79 rr~~ii~~~~l~~~~~~~~~~~~~~~~----~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~  154 (493)
                      ||+.++.+.+++.++.++++++++.+.    ....++++|+++|++.+...+....++.|..   |+++|++..+....+
T Consensus        93 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~---p~~~rg~~~~~~~~g  169 (438)
T PRK09952         93 RKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESA---PKNKKAFYSSGVQVG  169 (438)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhC---CCCCCcHHHHHHHHH
Confidence            788888999999999999998874211    1124778999999999998888889999987   458899999999999


Q ss_pred             HHHHHHHHHHHHHHhh--------ccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccC
Q 011112          155 MAFGGICGSLLGGYAL--------TNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILD  226 (493)
Q Consensus       155 ~~~G~~lg~~i~g~l~--------~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (493)
                      ..+|.+++..+...+.        +++|||++|++.+++.++........||+++..+++.+       +     +    
T Consensus       170 ~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~-------~-----~----  233 (438)
T PRK09952        170 YGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHE-------Q-----A----  233 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhh-------c-----c----
Confidence            9999988887776654        35799999998776543322222345666543211000       0     0    


Q ss_pred             CCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHH-HHHHHHh
Q 011112          227 DEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMA-WFFLAHV  305 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~l~~~  305 (493)
                       +     ++        ++       .                      +..+      ..+++|+.+.... ..++...
T Consensus       234 -~-----~~--------~~-------~----------------------~~~~------~l~~~~~~~~~~~~~~~~~~~  264 (438)
T PRK09952        234 -A-----AK--------KR-------I----------------------PVIE------ALLRHPGAFLKIIALRLCELL  264 (438)
T ss_pred             -c-----cc--------cc-------C----------------------CHHH------HHHHchHHHHHHHHHHHHHHH
Confidence             0     00        00       0                      0011      1223444333221 1111111


Q ss_pred             cccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheecccccc
Q 011112          306 AVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTV  385 (493)
Q Consensus       306 ~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~  385 (493)
                      .........+.|.++.+|++............+..+++.++.+++.||+++|+.+..+.++..+..+........     
T Consensus       265 ~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-----  339 (438)
T PRK09952        265 TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA-----  339 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence            111112223446566688888765555445566677888899999999999998887765544332111111100     


Q ss_pred             CccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHh-hhhhhhHhHHHHhHHhhcCCCCCccchH
Q 011112          386 GISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISN-FGSTVGSFFGAGLASSLSISSGSFDNLL  464 (493)
Q Consensus       386 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~-lg~~~~~~i~g~l~~~~g~~~~~~~~~~  464 (493)
                       .+.....+....+.....+....+..++..|..|++.|+++.++.+...+ +++.++|.+.+.+.+..+   ++|.   
T Consensus       340 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~---~~~~---  412 (438)
T PRK09952        340 -QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG---GSWH---  412 (438)
T ss_pred             -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---CCch---
Confidence             01111111111222222222233456788999999999999999776655 788999999999988543   1232   


Q ss_pred             HHHHHHHhhhhhhhhhhhcccCCC
Q 011112          465 LGISIQALCTFIPIAFLFLIPKGA  488 (493)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~l~~~~  488 (493)
                      ..+....++.+++.+....+||..
T Consensus       413 ~~~~~~~~~~~i~~v~~~~~~~~~  436 (438)
T PRK09952        413 SVAIYLLAGCLISAMTALLMKDNQ  436 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccc
Confidence            233444455555555555566543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.94  E-value=3.3e-24  Score=221.40  Aligned_cols=338  Identities=14%  Similarity=0.047  Sum_probs=223.2

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhh
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSS  106 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~  106 (493)
                      +....+ |.+.+++|.|.++.++..+++.+++.+ ++++|+++||+     +||+.++.+..+..++.+.+..++    +
T Consensus        34 ~~~p~l-~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----Grr~~l~~~~~~~~~~~~~~~~a~----~  103 (413)
T PRK15403         34 LIQPGI-INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-----GRRPVLITGALIFTLACAATLFTT----S  103 (413)
T ss_pred             hhccCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-----CchHHHHHHHHHHHHHHHHHHHcC----C
Confidence            444444 446788999999999999999999887 79999999995     677888889988888888887765    5


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Q 011112          107 TWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLP  186 (493)
Q Consensus       107 ~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~  186 (493)
                      ++.+++.|+++|++.+...+...+.+.|..+   +++|++.+++......+|..+||++++.+.++.|||+.|++.+++.
T Consensus       104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~  180 (413)
T PRK15403        104 MTQFLIARFIQGTSICFIATVGYVTVQEAFG---QTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMG  180 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            6788999999999988777777777778774   4889999999999999999999999999999899999999988776


Q ss_pred             HHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCC
Q 011112          187 AIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEK  265 (493)
Q Consensus       187 ~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (493)
                      ++..+. .+++||++++++           +                 +.                              
T Consensus       181 ~i~~~~~~~~lp~~~~~~~-----------~-----------------~~------------------------------  202 (413)
T PRK15403        181 LIAFVGLLLAMPETVKRGA-----------V-----------------PF------------------------------  202 (413)
T ss_pred             HHHHHHHHHhCCCCccccC-----------C-----------------CC------------------------------
Confidence            665543 345677643210           0                 00                              


Q ss_pred             CCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHH
Q 011112          266 NNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTY  345 (493)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~  345 (493)
                                +.++..+++++.+|||.++...+..++............|.+.++..|+++.+.++.......+.++++.
T Consensus       203 ----------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~  272 (413)
T PRK15403        203 ----------SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANA  272 (413)
T ss_pred             ----------ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence                      0011123455677888887655443332322222222345666777899999999988777778888888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchH
Q 011112          346 TYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEG  425 (493)
Q Consensus       346 ~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  425 (493)
                      +.+++.+|...++.......+..++.++... .....     +..+............+.....|.....+....+..+|
T Consensus       273 l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~-~~~~~-----~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G  346 (413)
T PRK15403        273 IVARFVKDPTEPRFIWRAVPIQLVGLALLIV-GNLLW-----PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPKG  346 (413)
T ss_pred             HHHHHhccCCchhHHHHHHHHHHHHHHHHHH-HHHHc-----cccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCc
Confidence            8888876665555443332222222111111 00000     11110001111111122112222221112122233479


Q ss_pred             HHHHHHHHHHhhhhhhhHhHHHHhHHh
Q 011112          426 TLFALFMSISNFGSTVGSFFGAGLASS  452 (493)
Q Consensus       426 t~~gl~~~~~~lg~~~~~~i~g~l~~~  452 (493)
                      ++.+++++....+...++..++++.+.
T Consensus       347 ~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        347 TVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999988889999999988775

>PRK12382 putative transporter; Provisional

Probab=99.94  E-value=2e-24  Score=221.32  Aligned_cols=360  Identities=14%  Similarity=0.093  Sum_probs=225.9

Q ss_pred             HHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHH
Q 011112           16 ICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVP   93 (493)
Q Consensus        16 ~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~   93 (493)
                      +....++..+. ++....++.++++++|.|..++|+..+++.+++.+ +|++|+++||+     +||+.++.+.+.+.++
T Consensus        20 ~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-----g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         20 IAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-----GAKRSALQGMLACGLA   94 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-----cchHHHHHHHHHHHHH
Confidence            33334444443 35555566677888999999999999999999887 89999999995     5677777777666554


Q ss_pred             HHHH---hhccc-chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011112           94 WLIL---GLNAF-FRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYA  169 (493)
Q Consensus        94 ~~~~---~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l  169 (493)
                      ....   +..+. ...+++.+++.|+++|++.+...+...+.+.|..   |+++|++++++...+...|..+|+.+++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~---~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l  171 (392)
T PRK12382         95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLV---GPKHSGKVMSWNGMAMYGALAAGAPLGLLL  171 (392)
T ss_pred             HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4322   22221 1235677889999999999988888888888887   458999999999999999999999999999


Q ss_pred             hccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhh
Q 011112          170 LTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKN  249 (493)
Q Consensus       170 ~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (493)
                      .++.|||+.+.+..+.+++........||++++++                       +     +               
T Consensus       172 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~-----~---------------  208 (392)
T PRK12382        172 HSHFGFAALALTTMVLPLLAWAFNGTVRKVPAHAG-----------------------E-----R---------------  208 (392)
T ss_pred             HhccChHHHHHHHHHHHHHHHHHHHhccCCCCCcc-----------------------c-----C---------------
Confidence            99999998877655433222222111222211000                       0     0               


Q ss_pred             hhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHH
Q 011112          250 QKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFL  329 (493)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~  329 (493)
                         .                      +.++..+..+    ++.+.. .+..+. ..   ......+.|..+ .|++.  .
T Consensus       209 ---~----------------------~~~~~~~~~~----~~~~~~-~l~~~~-~~---~~~~~~~~~~~~-~~~~~--~  251 (392)
T PRK12382        209 ---P----------------------SLWSVVGLIW----KPGLGL-ALQGVG-FA---VIGTFVSLYFAS-KGWAM--A  251 (392)
T ss_pred             ---c----------------------hHHHHHHHHH----HhHHHH-HHHHHH-Hh---HHHHHHHHHHHh-cCCch--h
Confidence               0                      1111111111    111111 111110 00   011111223333 45553  4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHh
Q 011112          330 GTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFM  409 (493)
Q Consensus       330 gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~  409 (493)
                      +.......++.+++.++.+++.||.++|+.+..+..+..+..+. ....         ++.+..+....+..........
T Consensus       252 ~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~l~g~~~~~~~~  321 (392)
T PRK12382        252 GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL-LWLA---------PTAWVALAGAALTGAGCSLIFP  321 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH-HHHc---------ccHHHHHHHHHHHHHHHHhHHH
Confidence            55445566777888899999999999999888877766654322 1111         1111111111222222222233


Q ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhh
Q 011112          410 PFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFL  481 (493)
Q Consensus       410 ~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (493)
                      +..+...+.+|+++||+++|++++..++|..++|.++|.+.|.+|+.        ..+.+.+++.+++.+..
T Consensus       322 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~--------~~~~~~~~~~~~~~~~~  385 (392)
T PRK12382        322 ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYP--------SVFLAGAISAVLGIIVT  385 (392)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHHHHHHHH
Confidence            34567788899999999999999999999999999999999987643        23444555555555444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.94  E-value=3.9e-24  Score=219.44  Aligned_cols=352  Identities=12%  Similarity=0.071  Sum_probs=236.9

Q ss_pred             HHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHH
Q 011112           13 LWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLS   90 (493)
Q Consensus        13 ~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~   90 (493)
                      .+.+....++..+. .+....+++. .+++|.++.+.++..+.+.+++.+ +|++|+++||+     +||+.++.+..+.
T Consensus         5 f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-----grr~vl~~~~~~~   78 (393)
T PRK11195          5 FYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-----PKGRVMFIANGIK   78 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-----CCchhhHHHHHHH
Confidence            34466677777774 4555555666 457999999999999999999987 89999999995     6788888998888


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011112           91 LVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL  170 (493)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~  170 (493)
                      .++.+.+...+    +   .++.|+++|++.+...+...+++.|+.+   +++|++++|+......+|.++||.++|++.
T Consensus        79 ~~~~~~~~~~~----~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~---~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195         79 LLGCLLMLFGI----H---PLLAYGLVGIGAAAYSPAKYGILTELLP---GEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             HHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777665543    2   1678899999999999999999999995   489999999999999999999999999998


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhh
Q 011112          171 TNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQ  250 (493)
Q Consensus       171 ~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (493)
                      ++ .|+..+.+.+...++..+..+.+||++++++++       +                   ++        .+     
T Consensus       149 ~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~-------~-------------------~~--------~~-----  188 (393)
T PRK11195        149 DP-HAEAALAVCALIYLLAALFNLFIPRLGARRPGQ-------S-------------------WN--------PI-----  188 (393)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHhcCCCCccccccc-------C-------------------CC--------HH-----
Confidence            86 488877766654433333445677754322100       0                   00        00     


Q ss_pred             hhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHH
Q 011112          251 KKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLG  330 (493)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g  330 (493)
                        .                   ..++.++   ....++++|.........++.+..........+.|.++.+|+|+.+.|
T Consensus       189 --~-------------------~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G  244 (393)
T PRK11195        189 --A-------------------LLRDFFH---ACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPA  244 (393)
T ss_pred             --H-------------------HHHHHHH---HHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH
Confidence              0                   0001121   223445666654333222221221111222234566777899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhH
Q 011112          331 TARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMP  410 (493)
Q Consensus       331 l~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~  410 (493)
                      +......++.+++++..+|+.||.+.++.+..+..+ .+..+. +...         ++.+..+....+.....+....|
T Consensus       245 ~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~-~~~~---------~~~~~~~~~~~~~G~~~g~~~~~  313 (393)
T PRK11195        245 YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLL-MALQ---------HSLLPAYPLLILIGALGGFFVVP  313 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHH-HHHH---------hHHHHHHHHHHHHHHhhhhhhhh
Confidence            999999999999999999999998888877666432 222111 1100         11111111122233334444566


Q ss_pred             HHHHHhhcCCCCc-hHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCC
Q 011112          411 FLILSGQLCPPGI-EGTLFALFMSISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       411 ~~~~~~~~~p~~~-~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                      ..+.+++..|++. +|+..++.+...+++..++..+.+.+ +.+|+.
T Consensus       314 ~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~  359 (393)
T PRK11195        314 MNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVP  359 (393)
T ss_pred             HHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCC
Confidence            6777777666654 79999999999999999999988855 567764

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.94  E-value=1.8e-24  Score=228.65  Aligned_cols=397  Identities=13%  Similarity=0.074  Sum_probs=241.5

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      .+++....+.+.+++++++. .... ..+.+.+++|.|..+.++..+.+.++..+ .++.|+++||+     +||+.++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~   90 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITL-VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-----GRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHH
Confidence            34555666777788888875 4444 44556788999999999999999988877 78999999995     67788888


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +.++..++.+.+++.+    +++.+.+.|++.|++.+...+..++++.|..+   +++|++++++......+|..+++.+
T Consensus        91 ~~~~~~~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~~  163 (496)
T PRK03893         91 SIVLFSVGTLACGFAP----GYWTLFIARLVIGMGMAGEYGSSATYVIESWP---KHLRNKASGFLISGFSIGAVVAAQV  163 (496)
T ss_pred             HHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888777764    56778899999999999988889999999884   5889999999999999999999999


Q ss_pred             HHHhhccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhh
Q 011112          166 GGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKK  245 (493)
Q Consensus       166 ~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (493)
                      ++.+.++.+||+.|++.++..++..+.....||+++..+.+.+      ++     +   .++.    .+  . ....++
T Consensus       164 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------~~-----~---~~~~----~~--~-~~~~~~  222 (496)
T PRK03893        164 YSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAG------KA-----P---VRTM----VD--I-LYRGEH  222 (496)
T ss_pred             HHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccc------cc-----c---chhH----HH--H-Hhcchh
Confidence            9999999999999987543322222222345655432210000      00     0   0000    00  0 000000


Q ss_pred             hhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHH-------------HHHHHHHhhcccch---HHHHHHHHHHHhcccC
Q 011112          246 NKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKA-------------AIYSLYSAFRQPEI---LRPMAWFFLAHVAVPN  309 (493)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~---~~~~~~~~l~~~~~~~  309 (493)
                      +..+.... .....        .....+....++             .........+.++.   .......+........
T Consensus       223 ~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (496)
T PRK03893        223 RIINILLT-LAAAA--------ALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWP  293 (496)
T ss_pred             HHHHHHHH-HHHHH--------HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccch
Confidence            00000000 00000        000000000000             00000000011111   0111111111111111


Q ss_pred             CCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccC
Q 011112          310 LSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISD  389 (493)
Q Consensus       310 ~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~  389 (493)
                      .....+.|+++++|++..+.+.+.....++.+++.++.+++.||.++|+.+..+.++..+..+. .....       ...
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~-------~~~  365 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIP-VFAIG-------GAN  365 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-Hhhcc-------ccH
Confidence            1223456666678999999999988888999999999999999999999887776554443221 11111       011


Q ss_pred             ceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          390 KTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       390 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      .+.......+....+........+++++.+|++.+|+.+|++++..++|..++|.++|.+.|.+|+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~  431 (496)
T PRK03893        366 VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL  431 (496)
T ss_pred             HHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCCh
Confidence            111111111111122111223346788999999999999999999999999999999999998764

>TIGR00895 2A0115 benzoate transport

Probab=99.94  E-value=4.7e-25  Score=225.03  Aligned_cols=379  Identities=17%  Similarity=0.188  Sum_probs=235.1

Q ss_pred             chhHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIST   87 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~   87 (493)
                      +++........++..++.........|.+.+++|.+..+.++..+...++..+ ++++|+++||+     +||+.++.+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~   89 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-----GRKRVLLWSI   89 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-----hhHHHHHHHH
Confidence            34444444455666666543333445566778999999999999888888877 78999999995     6778888888


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011112           88 VLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGG  167 (493)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g  167 (493)
                      ++..++.+++...+    +.+.+++.+++.+++.+...+...+++.|..+   +++|+++.++......+|..+|+.+++
T Consensus        90 ~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~~~~  162 (398)
T TIGR00895        90 LLFSVFTLLCALAT----NVTQLLILRFLAGLGLGGLMPNLNALVSEYAP---KRFRGTAVGLMFCGYPIGAAVGGFLAG  162 (398)
T ss_pred             HHHHHHHHHHHHcc----chHHHHHHHHHHhcccccchhhHHHHHHHHcC---HHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence            88888777776654    46677889999999999999999999999884   488999999999999999999999999


Q ss_pred             HhhccccHHHHHHHHHHHHHHHHH-Hhhccccccccchhhhccc--ccCCCcccCCCCcccCCCCCccccchhhhhhhhh
Q 011112          168 YALTNIEIDRIFLLFTVLPAIQLL-SCGLVKENRVSTKVLKEFS--SSNGYHQVNGNESILDDEDGFSEEKYNISTKKRK  244 (493)
Q Consensus       168 ~l~~~~gw~~~f~~~~~~~~l~~i-~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (493)
                      ++.+..+||+.|++.+++..+..+ ...++||+++....++++.  ...++.. ++.+.  .++...++++      . +
T Consensus       163 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~------~-~  232 (398)
T TIGR00895       163 WLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIA-PQMQA--EAQSALPEQK------A-T  232 (398)
T ss_pred             HHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHH-Hhccc--cccccccccc------c-c
Confidence            999999999999988655555443 3455777654321110000  0000000 00000  0000000000      0 0


Q ss_pred             hhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCC
Q 011112          245 KNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNL  324 (493)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~  324 (493)
                      +       .                      ..++..+.+++..+.+..+...+..++............+ +..++.|+
T Consensus       233 ~-------~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~  282 (398)
T TIGR00895       233 Q-------G----------------------TKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGF  282 (398)
T ss_pred             c-------c----------------------hhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCC
Confidence            0       0                      1111111121111112221111111111111111111223 33455799


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHH
Q 011112          325 EASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVN  404 (493)
Q Consensus       325 s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~  404 (493)
                      ++.+.+.......++.+++.++.+++.||+++|+..... .+..+.........         .+.........+..+..
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~  352 (398)
T TIGR00895       283 SLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL-LLGAVFAVLVGSTL---------FSPTLLLLLGAIAGFFV  352 (398)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHHH
Confidence            998999888888889999999999999999988444333 33332222111100         11111111122233333


Q ss_pred             HhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHh
Q 011112          405 QFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGL  449 (493)
Q Consensus       405 ~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l  449 (493)
                      +.......+++.+..|++.|++++|+++++.++|..++|.++|.+
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       353 NGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            334444567899999999999999999999999999999998875

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.94  E-value=3.7e-24  Score=217.92  Aligned_cols=259  Identities=17%  Similarity=0.195  Sum_probs=191.9

Q ss_pred             HHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHH
Q 011112           33 VSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLI  111 (493)
Q Consensus        33 ~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~  111 (493)
                      ..|.+.+++|.|+++.++..+++.++..+ ++++|+++||+     +||+.+..+.++..++...+...+    +++.+.
T Consensus        13 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~   83 (377)
T PRK11102         13 ALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-----GRKPVILGGTLVFALAAVACALAQ----TIDQLI   83 (377)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-----CChHHHHHHHHHHHHHHHHHHHHc----cHHHHH
Confidence            33444667999999999999999998887 79999999995     678888888888888888777664    466778


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Q 011112          112 VLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLL  191 (493)
Q Consensus       112 ~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i  191 (493)
                      +.|++.+++.+...+..++++.|..+   +++|++++++.+....+|..+++.+++.+.++.+||+.|++.+++.++..+
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  160 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFP---KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAA  160 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999874   588999999999999999999999999999999999999988877666554


Q ss_pred             H-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchh
Q 011112          192 S-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLV  270 (493)
Q Consensus       192 ~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (493)
                      . .++.||+++++++          +                 +          .                         
T Consensus       161 ~~~~~~~~~~~~~~~----------~-----------------~----------~-------------------------  178 (377)
T PRK11102        161 LVFFFIPETLPKERR----------Q-----------------P----------F-------------------------  178 (377)
T ss_pred             HHHHhCCccCccccc----------C-----------------C----------C-------------------------
Confidence            3 3456665432210          0                 0          0                         


Q ss_pred             HHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011112          271 IQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGY  350 (493)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~  350 (493)
                           +.++..++..+.+++|+.+...+..++............+++..+..|+++.+.|.......++.+++..+.+++
T Consensus       179 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l  253 (377)
T PRK11102        179 -----HLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRF  253 (377)
T ss_pred             -----ChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 011112234455677776554433322222111111222334455689999999998888889999999999999


Q ss_pred             HhcCChhHHHHHHHHHHHHH
Q 011112          351 LKRLKLRRILLLTQVGLSIL  370 (493)
Q Consensus       351 ~~~~~~r~~l~~~~~~~~~~  370 (493)
                      .||.++|+.+..+..+..+.
T Consensus       254 ~~r~g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        254 VRRVGALNMLRFGLWIQFIM  273 (377)
T ss_pred             HHHhCHHHHHHHHHHHHHHH
Confidence            99999999888877655443

>PRK03699 putative transporter; Provisional

Probab=99.94  E-value=1.2e-24  Score=223.26  Aligned_cols=354  Identities=13%  Similarity=0.112  Sum_probs=233.0

Q ss_pred             hhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            7 VFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      ..+++..+...+.+++.+... .....+++ +++++|+|.++.++..+.+.+++.+ .+++|+++||+     +||+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-----g~r~~~~   76 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-----PLKRQLI   76 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHH
Confidence            345667776667777777653 44444444 5778999999999999999988887 78999999995     6777888


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL  164 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~  164 (493)
                      .+.++..++.+.+++.+    +++.+.+.|++.+++.+...+...+++.|..+   +++|+++.+.......+|..++|.
T Consensus        77 ~~~~~~~i~~~l~~~~~----~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~  149 (394)
T PRK03699         77 FGFALMILAVAGLMFSH----SLALFSIAMFVLGVVSGITMSIGTFLITHVYE---GKQRGSRLLFTDSFFSMAGMIFPI  149 (394)
T ss_pred             HHHHHHHHHHHHHHHcc----hHHHHHHHHHHHHHhhHhhccchhHHhhhhcc---cchHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888777764    46678899999999988887778888888874   478999999988888999999999


Q ss_pred             HHHHhhc-cccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhh
Q 011112          165 LGGYALT-NIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKR  243 (493)
Q Consensus       165 i~g~l~~-~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (493)
                      +.+++.+ ..+||+.|...+++.++..+..++ ++.++.++.+       +++           +     +         
T Consensus       150 ~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~-------~~~-----------~-----~---------  196 (394)
T PRK03699        150 IAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPALGKHA-------PKA-----------D-----K---------  196 (394)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccccccC-------ccc-----------c-----C---------
Confidence            9888764 579999999888766555443332 2212111000       000           0     0         


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCC
Q 011112          244 KKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILN  323 (493)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g  323 (493)
                               .                      ..++        ..+|+++...+..++............+.|.++.+|
T Consensus       197 ---------~----------------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g  237 (394)
T PRK03699        197 ---------P----------------------VAKE--------KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFG  237 (394)
T ss_pred             ---------c----------------------cccc--------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                     0                      0000        001222222222222111111122334566667789


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHH
Q 011112          324 LEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAV  403 (493)
Q Consensus       324 ~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~  403 (493)
                      +|+.+.+.+.....++..++.++.+++.||+++|+.+.....+..+.... ....         ++..............
T Consensus       238 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~~~G~~  307 (394)
T PRK03699        238 MSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL-FVNT---------DDPSHLLYAILGLGFF  307 (394)
T ss_pred             CChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH-HHHc---------CCchHHHHHHHHHHHH
Confidence            99999998877778888999999999999999999887766554443211 1111         1111111111122222


Q ss_pred             HHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCC
Q 011112          404 NQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       404 ~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                      ....+....+...+..| +.+++..+......++|..++|.+.|.+.|..|+.
T Consensus       308 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~  359 (394)
T PRK03699        308 SSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCch
Confidence            22222222345556555 44577888889999999999999999999987753

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.94  E-value=1.6e-24  Score=225.48  Aligned_cols=373  Identities=13%  Similarity=0.047  Sum_probs=228.0

Q ss_pred             HHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHH
Q 011112           14 WLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLV   92 (493)
Q Consensus        14 ~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~   92 (493)
                      +...+.+..............|++++ +|.|+++.++..+++.+++.+ ++++|+++||+     +||+.++.+.++.++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~~~~~~~~~~~~~~  103 (438)
T TIGR00712        30 LGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-----NPRVFLPAGLILSAA  103 (438)
T ss_pred             HHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-----CCceehHHHHHHHHH
Confidence            33334444444332222334566675 699999999999999998887 78999999996     566777788888888


Q ss_pred             HHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh-c
Q 011112           93 PWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL-T  171 (493)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~-~  171 (493)
                      +.+.+...+...++.+.+.+.|++.+++.+...++....+.|..   |+++|++++|+.+...++|..+++.+.+... +
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~---~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWW---SQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhc---CcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            77766654322234556778899999988887777788888877   4588999999999999999999888777544 4


Q ss_pred             cccHHHHHHHHHHHHHHHHH-HhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhh
Q 011112          172 NIEIDRIFLLFTVLPAIQLL-SCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQ  250 (493)
Q Consensus       172 ~~gw~~~f~~~~~~~~l~~i-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (493)
                      +.+||+.|++.+++.++..+ ..+++||++++.+.++    .++.+   + +.  .++..   ++      .+.+     
T Consensus       181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~---~-~~--~~~~~---~~------~~~~-----  236 (438)
T TIGR00712       181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP----IEEYR---N-DY--PDDYN---EK------AEQE-----  236 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC----chhcc---c-cc--ccccc---cc------cccc-----
Confidence            57999999998877766554 3455677654321000    00000   0 00  00000   00      0000     


Q ss_pred             hhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHH
Q 011112          251 KKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLG  330 (493)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g  330 (493)
                        .                      +.++...  ...+|+|.++...+..++.+..........+.|.++..|+|+.+.+
T Consensus       237 --~----------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~  290 (438)
T TIGR00712       237 --L----------------------TAKEIFM--QYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSS  290 (438)
T ss_pred             --c----------------------chHHHHH--HHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHH
Confidence              0                      1122111  1356788877665443332222222223345666666899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH--HhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhH
Q 011112          331 TARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSI--LSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKF  408 (493)
Q Consensus       331 l~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~--~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  408 (493)
                      +......++.+++.++.+++.||+++++....+.....+  ...........       ...+... ...+  ..+....
T Consensus       291 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~--~~g~~~~  360 (438)
T TIGR00712       291 WAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPA-------GNPLVDM-ICMI--VIGFLIY  360 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCC-------CchHHHH-HHHH--HHHHHHc
Confidence            887778888899999999999998543322222211111  11111111000       0111000 0001  1111111


Q ss_pred             hHH---HHHHhhcCCCCchHHHHHHHHHHHhhhh-hhhHhHHHHhHHhhcC
Q 011112          409 MPF---LILSGQLCPPGIEGTLFALFMSISNFGS-TVGSFFGAGLASSLSI  455 (493)
Q Consensus       409 ~~~---~~~~~~~~p~~~~gt~~gl~~~~~~lg~-~~~~~i~g~l~~~~g~  455 (493)
                      .+.   .....+.+|++.+|+++|++++..++++ .++|.+.|.+.|..|+
T Consensus       361 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~  411 (438)
T TIGR00712       361 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  411 (438)
T ss_pred             cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccc
Confidence            121   2356788999999999999999998875 6799999999998764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.94  E-value=6.8e-24  Score=217.69  Aligned_cols=374  Identities=13%  Similarity=0.085  Sum_probs=226.8

Q ss_pred             hchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHH-HhhHhhhhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVA-FFPWSIKPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~-~l~~~~~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++.+... +.+..|+.++. ++....+++++++++|.|.+++|...+.. ..++.+++++|..+||+    .+||.+++.
T Consensus        13 ~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~----g~r~~~~~~   87 (393)
T PRK15011         13 FDLTSTA-FLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKR----GDRKSLIVF   87 (393)
T ss_pred             ccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cchhHHHHH
Confidence            4444444 55667777776 46677788888999999999999987655 44666777665559995    245555666


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHhhhhchhcc--hhHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVL-LTAQNLGSAMADVVVDAMIAEAAKSERAAFA--GDLQSLSWLAMAFGGICG  162 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~l~~~~~~~~~~~~~ali~~~~~~~~~~~r--g~~~g~~~~~~~~G~~lg  162 (493)
                      +.++..+...++++.+    +++.+++. +++.+++ +...+..++++.|..++   ++|  +...+......++|.++|
T Consensus        88 ~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~~g  159 (393)
T PRK15011         88 CCLLGVLACTLFAWNR----NYFVLLFVGVFLSSFG-STANPQMFALAREHADK---TGREAVMFSSFLRAQVSLAWVIG  159 (393)
T ss_pred             HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhh---ccchHHHHHHHHHHHHHHHHHHh
Confidence            6665555555555543    45554444 4444444 45566777777775532   223  345578888999999999


Q ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhh
Q 011112          163 SLLGGYALTNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTK  241 (493)
Q Consensus       163 ~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (493)
                      |.+++++.+++|||+.|+..+++.++..+.+ +++||.+++++. .      + +           +     .       
T Consensus       160 ~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~-~-----------~-----~-------  208 (393)
T PRK15011        160 PPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPL-A------T-G-----------T-----L-------  208 (393)
T ss_pred             hHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcc-c------c-c-----------c-----c-------
Confidence            9999999999999999999887766665543 457776432210 0      0 0           0     0       


Q ss_pred             hhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeecc
Q 011112          242 KRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEI  321 (493)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  321 (493)
                                 +                      ..++         +.+..+......++............+.|.++.
T Consensus       209 -----------~----------------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~  246 (393)
T PRK15011        209 -----------E----------------------APRR---------NRRDTLLLFVICTLMWGTNSLYIINMPLFIINE  246 (393)
T ss_pred             -----------c----------------------cccc---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       0                      0000         000111111111111111111112234566667


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHH
Q 011112          322 LNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVD  401 (493)
Q Consensus       322 ~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~  401 (493)
                      +|+++.+.|.+.....+..+++.++.+++.||+++|+.+..+.+...+. +......         ++....+....+..
T Consensus       247 ~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~l~~~~l~~  316 (393)
T PRK15011        247 LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCF-YAGMLMA---------HSPAILLGLQLLNA  316 (393)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHHHHHH---------hhHHHHHHHHHHHH
Confidence            8999988888766666777888999999999999999877654443332 1111111         11111111111122


Q ss_pred             HHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhh
Q 011112          402 AVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFL  481 (493)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (493)
                      ...+........+..|..|+ ++|+++++++...++|..+++.++|.+.+.+|+        ...+.+...+.++.++..
T Consensus       317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~--------~~~~~~~~~~~~~~~~~~  387 (393)
T PRK15011        317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNY--------HAVFWFALVMIIATLFCL  387 (393)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHH
Confidence            22222222234556777775 599999999999999999999999999997653        234445556666666666


Q ss_pred             hcccC
Q 011112          482 FLIPK  486 (493)
Q Consensus       482 ~~l~~  486 (493)
                      .++||
T Consensus       388 ~~~~~  392 (393)
T PRK15011        388 LRIKD  392 (393)
T ss_pred             HhhcC
Confidence            66665

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=4.5e-24  Score=219.15  Aligned_cols=349  Identities=14%  Similarity=0.153  Sum_probs=230.5

Q ss_pred             HHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHH
Q 011112           13 LWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLS   90 (493)
Q Consensus        13 ~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~   90 (493)
                      .+++....++..+. +.....+++++++++|.|..++|+..+.+.+...+ +|++|.++||+     +||+.++.+.+..
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~k~~~~~~~~~~   83 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-----DKKRYMLLAITAF   83 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CcchhHHHHHHHH
Confidence            34455666666654 45566677888889999999999999988877765 89999999995     5677888888877


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011112           91 LVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL  170 (493)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~  170 (493)
                      .++.+.+.+.+    +++.+++.|.+.+.+.+...+..++...|..+   +++|+++.|+.....++|..+||.+++++.
T Consensus        84 ~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054         84 ASGFIAIPLVN----NVTLVVLFFALINCAYSVFSTVLKAWFADNLS---STSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766654    45566667777776666666777888888774   588999999999999999999999999988


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhh
Q 011112          171 TNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKN  249 (493)
Q Consensus       171 ~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (493)
                      + .+|+.+|++.+++.++..+.. +++||++++++.        +                   +          +    
T Consensus       157 ~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~--------~-------------------~----------~----  194 (395)
T PRK10054        157 M-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIAT--------E-------------------T----------G----  194 (395)
T ss_pred             H-hccCcHHHHHHHHHHHHHHHHHHHHhcccccccc--------c-------------------h----------h----
Confidence            5 699999998876665554433 345554322200        0                   0          0    


Q ss_pred             hhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeee--ccCCCCHH
Q 011112          250 QKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQT--EILNLEAS  327 (493)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~g~s~~  327 (493)
                         .                      . +    +..+.+|+|+++...+..++............+.|..  ++.+.+..
T Consensus       195 ---~----------------------~-~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (395)
T PRK10054        195 ---S----------------------V-W----SPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEK  244 (395)
T ss_pred             ---h----------------------h-h----hhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHH
Confidence               0                      0 0    1134467787766554433322221111111122222  23456666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhh
Q 011112          328 FLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFK  407 (493)
Q Consensus       328 ~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~  407 (493)
                      ..+.......+..+......+++.||.++|+.+..+.++..+..... ....        ++.+.++. .......+...
T Consensus       245 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~--------~~~~~~~~-~~~~~~~g~~~  314 (395)
T PRK10054        245 VVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGF-IFSG--------NSLLLWGM-SAAVFTVGEII  314 (395)
T ss_pred             HHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHH-HHcc--------hHHHHHHH-HHHHHHHHHHH
Confidence            67777666666666666778899999999998887766655543221 1110        11111111 12222223333


Q ss_pred             HhHH-HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCC
Q 011112          408 FMPF-LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       408 ~~~~-~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                      ..|. .+++.+..|++.++++++..+ ...+|..+||.++|.+.|++|..
T Consensus       315 ~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~  363 (395)
T PRK10054        315 YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPW  363 (395)
T ss_pred             HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChh
Confidence            3444 467889999999999998754 67789999999999999987653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.94  E-value=3.4e-24  Score=226.93  Aligned_cols=426  Identities=15%  Similarity=0.105  Sum_probs=244.8

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhh-----CCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCch
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKL-----KFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRI   80 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~-----g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr   80 (493)
                      +++....++.+..+.++++. ...... +.+.+++     +.+..+.+++.+...++..+ ++++|+++||+     +||
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-----Grr   86 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLVT-KMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-----GRK   86 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccH
Confidence            34444445566668888875 444443 3445432     34566778888888888877 78999999995     688


Q ss_pred             hHHHHHHHHHHHHHHHHhhcccchh--hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHH
Q 011112           81 PYLVISTVLSLVPWLILGLNAFFRS--STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFG  158 (493)
Q Consensus        81 ~~ii~~~~l~~~~~~~~~~~~~~~~--~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G  158 (493)
                      +.+..+.++..++..++++.++...  +++.+++.|+++|++.+...+....++.|.+   |+++||++.++......+|
T Consensus        87 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~---p~~~Rg~~~~~~~~~~~~g  163 (502)
T TIGR00887        87 RVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFA---TKKWRGAMMAAVFAMQGFG  163 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc---ChhhHHHHHHHHHHHHHHH
Confidence            8888888888888777776543111  2567899999999999999999999999998   4699999999999999999


Q ss_pred             HHHHHHHHHHhhc-----------------------cccHHHHHHHHHHHHHHHHHHhhccccccccchh--hhc--cc-
Q 011112          159 GICGSLLGGYALT-----------------------NIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKV--LKE--FS-  210 (493)
Q Consensus       159 ~~lg~~i~g~l~~-----------------------~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~--~~~--~~-  210 (493)
                      .++|+.++..+..                       ..+||++|.+.++..++..+..+++||+|++...  +++  +. 
T Consensus       164 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~  243 (502)
T TIGR00887       164 ILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAAS  243 (502)
T ss_pred             HHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHH
Confidence            9999988876532                       2379999988776665555566789999886421  111  00 


Q ss_pred             ccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcc
Q 011112          211 SSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQ  290 (493)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  290 (493)
                      .+++.+. ++.+. ..++.... ++      . .+                              ..+..++++++...+
T Consensus       244 ~~~~~~~-~~~~~-~~~~~~~~-~~------~-~~------------------------------~~~~~~~~l~~~~~~  283 (502)
T TIGR00887       244 DMSAVLQ-VKIEA-EPDEVEKA-ST------A-VE------------------------------VPKASWSDFFTHFFK  283 (502)
T ss_pred             HHHHHhc-ccccc-Ccccccch-hc------c-cc------------------------------chhhhHHHHHHHHhh
Confidence            0000000 00000 00000000 00      0 00                              000111122111111


Q ss_pred             cchHHH----HHHHHHHHhcccCCCcceeeeeeccCCCCHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHhcC
Q 011112          291 PEILRP----MAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLG-----------T-ARVVGWVGLMLGTYTYNGYLKRL  354 (493)
Q Consensus       291 ~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g-----------l-~~~~~~~~~~l~~~~~~~~~~~~  354 (493)
                      ++.++.    ....+.............+.+.+ ..|++..+.+           . ...+..++.+++.++.+++.||.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~  362 (502)
T TIGR00887       284 WRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII  362 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            111111    11111111111111111233332 3566543211           1 12334556677888899999999


Q ss_pred             ChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhH-HHHHHhhcCCCCchHHHHHHHHH
Q 011112          355 KLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMP-FLILSGQLCPPGIEGTLFALFMS  433 (493)
Q Consensus       355 ~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~gt~~gl~~~  433 (493)
                      |+|+.+..+..+..+...+........      +... .+....+..........+ ...+..|..|++.|++++|+.++
T Consensus       363 gRR~~l~~~~~~~~~~~~~l~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~  435 (502)
T TIGR00887       363 GRKPIQLMGFFILTVLFFVLGFAYNHL------STHG-FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAA  435 (502)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhc------chhH-HHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHH
Confidence            999998887766655432221111100      1111 011111111111122222 24567999999999999999999


Q ss_pred             HHhhhhhhhHhHHHHhHHhhcCCCCCc--cchHHHHHHHHhhhhhhhhhhhcccCCCCC
Q 011112          434 ISNFGSTVGSFFGAGLASSLSISSGSF--DNLLLGISIQALCTFIPIAFLFLIPKGATG  490 (493)
Q Consensus       434 ~~~lg~~~~~~i~g~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  490 (493)
                      ++++++.+++.+.+.+.+.-+...+.+  .++...+.+.++++++..++..++||++++
T Consensus       436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~  494 (502)
T TIGR00887       436 SGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGK  494 (502)
T ss_pred             HhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCC
Confidence            999999999999998887432110000  012223444555555555555678987764

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.94  E-value=1.4e-23  Score=215.23  Aligned_cols=352  Identities=16%  Similarity=0.170  Sum_probs=227.2

Q ss_pred             chhHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIST   87 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~   87 (493)
                      .++.++++...++...+......+..|.+.+++|.|+.+.++..+.+.+++.+ ++++|+++||+     +||+.++.+.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----grr~~~~~~~   80 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-----GRRPVILVGM   80 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-----CChHHHHHHH
Confidence            34444444555555444432333344555778999999999999999999987 79999999995     5777888888


Q ss_pred             HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011112           88 VLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGG  167 (493)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g  167 (493)
                      ++..++.+.+...+    +++.+++.|++.+++.+...+..+.+..|..+   .++|+++.+....+..+|..+||.+++
T Consensus        81 ~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~i~~  153 (394)
T PRK11652         81 SIFILGTLVALFAH----SLTVLIAASAIQGLGTGVGGVMARTLPRDLYE---GTQLRHANSLLNMGILVSPLLAPLIGG  153 (394)
T ss_pred             HHHHHHHHHHHHHc----cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888777766654    56778899999999988877778888888764   478899999999999999999999999


Q ss_pred             HhhccccHHHHHHHHHHHHHHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhh
Q 011112          168 YALTNIEIDRIFLLFTVLPAIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKN  246 (493)
Q Consensus       168 ~l~~~~gw~~~f~~~~~~~~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (493)
                      .+.++.|||+.|++.+++.++..+. .++.||+++.+++                            +            
T Consensus       154 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~------------  193 (394)
T PRK11652        154 LLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADAR----------------------------R------------  193 (394)
T ss_pred             HHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccc----------------------------h------------
Confidence            9999899999999887666555433 3456765432210                            0            


Q ss_pred             hhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCH
Q 011112          247 KKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEA  326 (493)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~  326 (493)
                            .                      +.+   ++++..+|+|+.+...+..+.............+.+..+.+|+++
T Consensus       194 ------~----------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  242 (394)
T PRK11652        194 ------T----------------------RVL---ASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSS  242 (394)
T ss_pred             ------h----------------------HHH---HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCH
Confidence                  0                      001   123344566665543332222111111111122345556689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHh
Q 011112          327 SFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQF  406 (493)
Q Consensus       327 ~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~  406 (493)
                      .+.|+......++.++++.+.+|+.||.+++..  .......+.......  ....   .....+.......+.....+.
T Consensus       243 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~g~~~  315 (394)
T PRK11652        243 MTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWI--PGWF---GVMNVWTLLVPAALFFFGAGM  315 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHHh---ccccHHHHHHHHHHHHHHHHH
Confidence            999998888888999999999999998873222  222222211111111  0000   001111111111222222333


Q ss_pred             hHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHH
Q 011112          407 KFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       407 ~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~  451 (493)
                      .....+++..+..| +.+|+..++.+...++|..+++.+++.+.+
T Consensus       316 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        316 LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            33344566777776 578999999999999999888888776654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.93  E-value=3.7e-25  Score=222.18  Aligned_cols=347  Identities=23%  Similarity=0.326  Sum_probs=232.5

Q ss_pred             HHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHH
Q 011112           17 CLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPW   94 (493)
Q Consensus        17 ~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~   94 (493)
                      .+.+++..+.. .....++.++.+++|.|.+++++..+++.++..+ ++++|+++||+     +||+.++.+.++.+++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~   76 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-----GRRRVLIIGLLLFALGS   76 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS------HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCeeeEeehhhhhhhHH
Confidence            35566666654 5445544377889999999999999999988876 89999999995     57778889988888885


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011112           95 LILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIE  174 (493)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~g  174 (493)
                      +.+.+++    +.+.+++.|++.|++.+...+..++++.|..+   +++|++++++......+|.++|+.+++.+.++.+
T Consensus        77 ~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~  149 (352)
T PF07690_consen   77 LLLAFAS----NFWLLLIARFLLGIGSGFFSPASNALIADWFP---PEERGRAFGILSAGFSLGSILGPLLGGFLISYFG  149 (352)
T ss_dssp             HHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---TCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH
T ss_pred             HHhhhhh----hHHHHhhhccccccccccccccccccccccch---hhhhhhccccccchhhhhhhcccchhhhhhhccc
Confidence            5555433    34578999999999999999999999999885   4899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhh
Q 011112          175 IDRIFLLFTVLPAIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKR  253 (493)
Q Consensus       175 w~~~f~~~~~~~~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (493)
                      ||+.|++.+++.++..++ .++.++++++++.+.      +++           +..   +        .++        
T Consensus       150 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~------~~~-----------~~~---~--------~~~--------  193 (352)
T PF07690_consen  150 WRWAFLISAILSLIAAILFILFLPEPPPPRERES------PKE-----------SES---K--------KPK--------  193 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHCCC---STTTT--S------STT-----------TT-------------HHH--------
T ss_pred             cccccccccchhhhhhhhHhhhhhhccccccccc------ccc-----------ccc---c--------ccc--------
Confidence            999999999887777653 244554443331100      000           000   0        000        


Q ss_pred             hhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCC-HHHHHHH
Q 011112          254 MFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLE-ASFLGTA  332 (493)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s-~~~~gl~  332 (493)
                                            +.++   .+....++|.+|......++............+.|..+.+|++ ..+.+..
T Consensus       194 ----------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  248 (352)
T PF07690_consen  194 ----------------------PLKP---GFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLL  248 (352)
T ss_dssp             ----------------------CCCH----CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHH
T ss_pred             ----------------------cccc---ccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHH
Confidence                                  0111   0122234454442222222211122222333455666778999 7888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHH
Q 011112          333 RVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFL  412 (493)
Q Consensus       333 ~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~  412 (493)
                      ..+..+..+++.++.+++.||.++|+..........+..+........      .+..+.+. ...+.....+.......
T Consensus       249 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~g~~~~~~~~~~~  321 (352)
T PF07690_consen  249 FSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS------SSPVWLII-ALFLIGFGFGIVFPILF  321 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH------CHHHHHHH-HHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            888888888889999999999998777766666555543221111100      00111111 22233333344444557


Q ss_pred             HHHhhcCCCCchHHHHHHHHHHHhhhhhhhH
Q 011112          413 ILSGQLCPPGIEGTLFALFMSISNFGSTVGS  443 (493)
Q Consensus       413 ~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~  443 (493)
                      +++.+..|++++|+.+|+.++..+++..+||
T Consensus       322 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  322 SLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            8899999999999999999999999998886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09669 putative symporter YagG; Provisional

Probab=99.93  E-value=2.3e-23  Score=217.30  Aligned_cols=348  Identities=16%  Similarity=0.136  Sum_probs=227.4

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccc--h
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFF--R  104 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~--~  104 (493)
                      .....+++++++++|+|+.++|...++..+..++ +|+.|.++||.+.|+.|||+|++.+.+...++..++...|+.  .
T Consensus        27 ~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~  106 (444)
T PRK09669         27 TVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGAT  106 (444)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            4566778889999999999999999888877776 899999999999887788999999988877776655555431  1


Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc-------cccHHH
Q 011112          105 SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT-------NIEIDR  177 (493)
Q Consensus       105 ~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~-------~~gw~~  177 (493)
                      .....+.+...+...+.+...+++.++.+|+++  +++||++..++.....++|..+++.+...+..       ..+|+.
T Consensus       107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~--~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~  184 (444)
T PRK09669        107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITN--DPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY  184 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence            123344555556677777888899999999886  45889999999999888988888766554432       347888


Q ss_pred             HHHHHHHHHHHHHHHhh-ccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhh
Q 011112          178 IFLLFTVLPAIQLLSCG-LVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFK  256 (493)
Q Consensus       178 ~f~~~~~~~~l~~i~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      .+.+.+++..+..+.++ ..+|++++++         +                   +          +       .   
T Consensus       185 ~~~i~~ii~~v~~~~~~~~~~e~~~~~~---------~-------------------~----------~-------~---  216 (444)
T PRK09669        185 AMMVMGLLGVVLFFCCFFMTKERYTPEV---------D-------------------N----------S-------S---  216 (444)
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEecCCCC---------c-------------------C----------C-------C---
Confidence            88877776665554443 3455422110         0                   0          0       0   


Q ss_pred             hhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHH
Q 011112          257 IRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVG  336 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~  336 (493)
                                         +.++   +++..+|||.++..+...++.............+|.+..++. ++..+.....+
T Consensus       217 -------------------~~~~---~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~  273 (444)
T PRK09669        217 -------------------SVWK---DLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTG  273 (444)
T ss_pred             -------------------CHHH---HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHH
Confidence                               1122   344557888877655443332222222222334454444443 33344445566


Q ss_pred             HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHh
Q 011112          337 WVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSG  416 (493)
Q Consensus       337 ~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  416 (493)
                      .+..+++.++++++.||+|+|+.+..+.++..+..+. ..+..       ..+.+.......+.............++++
T Consensus       274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~i~g~~~~~~~~~~~am~a  345 (444)
T PRK09669        274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSAL-IFFIP-------PSNVWLIFALNILFNFIQNLTTPLQWSMFS  345 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH-HHHhC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888889999999999999988776655443221 11111       011111111112222222222222345666


Q ss_pred             hcC-------CCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCC
Q 011112          417 QLC-------PPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       417 ~~~-------p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                      +.+       .++.+|..+|.+++..++|..+|+.++|.+.+..|+.
T Consensus       346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV  392 (444)
T ss_pred             hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            655       3566889999999999999999999999999999985

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.93  E-value=1.3e-23  Score=216.07  Aligned_cols=372  Identities=16%  Similarity=0.214  Sum_probs=235.4

Q ss_pred             hchhHHH-HHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhh-----HHHHHHHHHhhHhh-hhhhhhcccccccCCCCc
Q 011112            8 FGVSFLW-LICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSA-----SQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKR   79 (493)
Q Consensus         8 ~~~~~~~-~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~-----~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~r   79 (493)
                      .+|+... .+.+..++.++.. +....++.++ +++|.+..+     .|+..++..++..+ +|++|+++||+     +|
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~   83 (408)
T PRK09874         10 INWKRNLTVAWLGCFLTGAAFSLVMPFLPLYV-EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-----GR   83 (408)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----Cc
Confidence            3444433 3445567777764 5555566665 569998665     37777788887776 89999999995     56


Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHH
Q 011112           80 IPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGG  159 (493)
Q Consensus        80 r~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~  159 (493)
                      |+.++.+.++..++..++...+    +++.+++.|++.+++.+.. +..++++.|..   |+++|+++.++......+|.
T Consensus        84 r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~  155 (408)
T PRK09874         84 KIMLLRSALGMGIVMVLMGLAQ----NIWQFLILRALLGLLGGFV-PNANALIATQV---PRNKSGWALGTLSTGGVSGA  155 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhhhH-HhHHHHHHHhc---CHhhhhHHHHHHHHHHHHHH
Confidence            7788888888777777666553    5677888999998876554 55667777776   45889999999999999999


Q ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhh
Q 011112          160 ICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNI  238 (493)
Q Consensus       160 ~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (493)
                      .+++.+++.+.++.+||+.|++.+++.++..+.. ++.||++++.++          +                 +    
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----------------~----  204 (408)
T PRK09874        156 LLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSK----------K-----------------E----  204 (408)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccc----------h-----------------h----
Confidence            9999999999999999999998887666555433 445654322210          0                 0    


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHH-HHHHHhcccCCCcceeee
Q 011112          239 STKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAW-FFLAHVAVPNLSTVMFYY  317 (493)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~  317 (493)
                            +       .                      +.+    +..+.+++|+.+..... .++............+.|
T Consensus       205 ------~-------~----------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (408)
T PRK09874        205 ------M-------L----------------------HMR----EVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLY  245 (408)
T ss_pred             ------h-------h----------------------HHH----HHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0       0                      111    22334566665443221 111111111112222334


Q ss_pred             eeccCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEee
Q 011112          318 QTEILNLEAS---FLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVL  394 (493)
Q Consensus       318 ~~~~~g~s~~---~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l  394 (493)
                      ..+..+...+   ..+.+..+..++.+++.+..+++.||.++|+.+..+..+..+..+. ....         ++.+.+.
T Consensus       246 ~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~  315 (408)
T PRK09874        246 VRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIP-MSFV---------QTPLQLG  315 (408)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-HHHh---------ccHHHHH
Confidence            3332222211   2344445566777888888999999999999888776665443221 1111         1111111


Q ss_pred             ehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhh
Q 011112          395 YGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCT  474 (493)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  474 (493)
                      ....+.....+.......+.+.+..|++.+|+.+++++++.++|..+||.++|.+.+.+|+.        ..+.+.+++.
T Consensus       316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~--------~~f~~~~~~~  387 (408)
T PRK09874        316 ILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFR--------AVFLVTAGVV  387 (408)
T ss_pred             HHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchh--------HHHHHHHHHH
Confidence            11122223333333334566778889999999999999999999999999999999876642        3444445545


Q ss_pred             hhhhhhh
Q 011112          475 FIPIAFL  481 (493)
Q Consensus       475 ~~~~~~~  481 (493)
                      +++.++.
T Consensus       388 l~~~~~~  394 (408)
T PRK09874        388 LFNAVYS  394 (408)
T ss_pred             HHHHHHH
Confidence            5544443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.93  E-value=4.9e-23  Score=211.11  Aligned_cols=351  Identities=15%  Similarity=0.123  Sum_probs=224.9

Q ss_pred             HHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHH
Q 011112           33 VSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLI  111 (493)
Q Consensus        33 ~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~  111 (493)
                      ..|.+.+++|.|..+.++..+++.++..+ +|+.|+++||+     +||+.++.+.++..++...+...+    +.+.++
T Consensus        25 ~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-----g~r~~l~~~~~~~~i~~~~~~~~~----~~~~~~   95 (392)
T PRK10473         25 GLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-----GRKPVAIPGAALFIIASLLCSLAE----TSSLFL   95 (392)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-----CChHHHHHHHHHHHHHHHHHHHhC----cHHHHH
Confidence            34555778999999999999999988877 79999999995     577888888888888887777654    456678


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Q 011112          112 VLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLL  191 (493)
Q Consensus       112 ~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i  191 (493)
                      +.|++++++.+...+...+++.|..+   +++|+++.++.+....+|..++|.+++.+.+..+||+.|++.+++.++..+
T Consensus        96 ~~~~l~g~~~~~~~~~~~~~i~~~~~---~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~  172 (392)
T PRK10473         96 AGRFLQGIGAGCCYVVAFAILRDTLD---DRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLL  172 (392)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHH
Confidence            89999999998888888899999874   589999999999999999999999999998888999999998877666655


Q ss_pred             Hh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchh
Q 011112          192 SC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLV  270 (493)
Q Consensus       192 ~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (493)
                      .. ++.||++++.+         + +                 ++        +                          
T Consensus       173 ~~~~~~~~~~~~~~---------~-~-----------------~~--------~--------------------------  191 (392)
T PRK10473        173 LSLFILKETRPARA---------P-A-----------------AS--------S--------------------------  191 (392)
T ss_pred             HHHHHcCCCCCccc---------C-C-----------------cc--------c--------------------------
Confidence            43 45666543210         0 0                 00        0                          


Q ss_pred             HHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011112          271 IQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGY  350 (493)
Q Consensus       271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~  350 (493)
                           ..+    +.++.+++|+.+...+...+............+++..+++|+++.+.+.......++.+++.++.+++
T Consensus       192 -----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l  262 (392)
T PRK10473        192 -----KPR----ENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFA  262 (392)
T ss_pred             -----hHH----HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 000    11223455554432222111111111111122445556689999999988888888899999999999


Q ss_pred             HhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHH
Q 011112          351 LKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFAL  430 (493)
Q Consensus       351 ~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl  430 (493)
                      .||+++|+.+..+.++..++.+. +....        ......+...... .  ++..........+..|.+.++   +.
T Consensus       263 ~~r~g~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~l~~-~--g~~~~~~~~~~~~~~~~~~~~---g~  327 (392)
T PRK10473        263 LGIFKPRTLMLTSQVLFLAAGIT-LALSP--------SHAVSLFGITLIC-A--GFSVGFGVAMSQALGPFSLRA---GV  327 (392)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHH-HHHHH--------HHHHHHHHHHHHH-H--HHHHHhHHHHHHHhccCcccc---cH
Confidence            99999999888877666554322 11111        0011111111111 1  111111112333444543332   33


Q ss_pred             HHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhccc
Q 011112          431 FMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIP  485 (493)
Q Consensus       431 ~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  485 (493)
                      .++...++..+++.+++.+.+.+|+..     ......+...+.++.+++..+.|
T Consensus       328 ~~~~~~~~~~~g~~~~~~l~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~  377 (392)
T PRK10473        328 ASSTLGIAQVCGSSLWIWLAAVLGISA-----WNMLIGILIACSIVSLLLILFVA  377 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccch-----hHHHHHHHHHHHHHHHHHHHhcC
Confidence            445566778888889999998887531     12233333444444444444455

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.93  E-value=2.9e-23  Score=212.07  Aligned_cols=340  Identities=15%  Similarity=0.120  Sum_probs=223.2

Q ss_pred             HHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHH
Q 011112           13 LWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLS   90 (493)
Q Consensus        13 ~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~   90 (493)
                      ++.+....++.++. ++.+..++++ .+++|.|.+++|+..+.+.++..+ +|++|+++||+     +||+.+..+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-----g~k~~~~~~~~~~   81 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLW-LAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-----GFNRSYYLASLIF   81 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHH
Confidence            44455666666665 4666666666 557999999999999999999887 79999999995     6778888888888


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011112           91 LVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL  170 (493)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~  170 (493)
                      .++...+++.+    +++.+++.|+++|++.+...+..++.+.+..+   +++|+++++.+....++|..+|+.+++.+.
T Consensus        82 ~~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633         82 AAGCAGLGLMV----GFWSWLAWRFVAGIGCAMIWVVVESALMCSGT---SRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            88887777764    57788899999999998887777777777763   478999999999999999999999999987


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhh
Q 011112          171 TNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQ  250 (493)
Q Consensus       171 ~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (493)
                      +...|+.. +..+..... .+..++.++++++.+         + +                 +          +     
T Consensus       155 ~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~---------~-~-----------------~----------~-----  190 (381)
T PRK03633        155 TELMSVLP-WVTGLVLAA-ILPLLFTRILNQQAE---------N-H-----------------D----------S-----  190 (381)
T ss_pred             ccccchHH-HHHHHHHHH-HHHHHHhcccCCCCC---------C-C-----------------C----------C-----
Confidence            75433322 222211111 111122222111110         0 0                 0          0     


Q ss_pred             hhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHH
Q 011112          251 KKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLG  330 (493)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g  330 (493)
                        .                      +.+       +.+|+|.++......+.............+.|.++ .|.++.+.|
T Consensus       191 --~----------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g  238 (381)
T PRK03633        191 --T----------------------SIW-------PMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIG  238 (381)
T ss_pred             --C----------------------CHH-------HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHH
Confidence              0                      111       12344544432211111111111111223445544 699998889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhH
Q 011112          331 TARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMP  410 (493)
Q Consensus       331 l~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~  410 (493)
                      .......++.+++....+++.||+++|+.+..+..+..++....  . ..       .  ..+. ...+... ......|
T Consensus       239 ~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~--~-~~-------~--~~~~-~~~l~g~-~~~~~~p  304 (381)
T PRK03633        239 FWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM--L-SQ-------A--AMAP-ALFILGA-AGFTLYP  304 (381)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH--h-hh-------H--HHHH-HHHHHHH-HHHhHHH
Confidence            88777888889999999999999999998887766665543211  1 10       0  0000 1111111 1222334


Q ss_pred             -HHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          411 -FLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       411 -~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                       .++.+.+..|+++++...+.++...++|..+||.++|.+.|++|+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~  350 (381)
T PRK03633        305 VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD  350 (381)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence             356778889988888888888888999999999999999998764

>PRK11043 putative transporter; Provisional

Probab=99.93  E-value=4.9e-23  Score=211.76  Aligned_cols=327  Identities=17%  Similarity=0.139  Sum_probs=216.3

Q ss_pred             HHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHH
Q 011112           34 SYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIV  112 (493)
Q Consensus        34 ~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~  112 (493)
                      .+.+++++|.|++++|+..+++.++..+ ++++|+++||+     +||+.++.+..+..++.+.+.+.+    +++.+++
T Consensus        29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~----~~~~l~~   99 (401)
T PRK11043         29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-----GRKPVLLAGLSLFALGSLGMLWVE----SAAQLLV   99 (401)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-----CCcHHHHHHHHHHHHHHHHHHHhc----CHHHHHH
Confidence            3445778999999999999999999887 79999999995     677788888888888777777654    5677888


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 011112          113 LLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLS  192 (493)
Q Consensus       113 ~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~  192 (493)
                      .|+++|++.+...+..++++.|..+   ++++++..+.......+|..+++.+++++.++.+||+.|++.+++.++..+.
T Consensus       100 ~~~l~G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~  176 (401)
T PRK11043        100 LRFVQAVGVCSAAVIWQALVIDRYP---AQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILP  176 (401)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            9999999988888888888888774   4778888999888899999999999999999999999999888776665555


Q ss_pred             hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHH
Q 011112          193 CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQ  272 (493)
Q Consensus       193 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (493)
                      .++.+|+++++++                            +                                      
T Consensus       177 ~~~~~~~~~~~~~----------------------------~--------------------------------------  190 (401)
T PRK11043        177 TLRLKPSKKARKQ----------------------------S--------------------------------------  190 (401)
T ss_pred             HHHcCCCCCcccc----------------------------c--------------------------------------
Confidence            4445544321100                            0                                      


Q ss_pred             HHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011112          273 WFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLK  352 (493)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~  352 (493)
                         +.+   .+.++.+|+|+.+...+...+............+++.+ +.|+++.+.|+......++.++++...+++.|
T Consensus       191 ---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~  263 (401)
T PRK11043        191 ---QDA---LTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQ  263 (401)
T ss_pred             ---hHH---HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               000   01233455665543222211111111111112344443 47999999998877778888999999999999


Q ss_pred             cCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHH
Q 011112          353 RLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFM  432 (493)
Q Consensus       353 ~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~  432 (493)
                      |.++|+.+....+...+..+....... ..    .+.....+....+.....+..+...++...+..| +++|++.|+++
T Consensus       264 r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~  337 (401)
T PRK11043        264 KWGGEQLLPWLLVLFAVSVIAIWLASL-LS----HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQN  337 (401)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHH-hc----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHH
Confidence            999888766555444433221111110 00    0111111111111122222222223444555555 57999999999


Q ss_pred             HHHhhhhhhhHhHHHHhHH
Q 011112          433 SISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       433 ~~~~lg~~~~~~i~g~l~~  451 (493)
                      +.+..+...++.+.|.+.+
T Consensus       338 ~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        338 TLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHHHHHccC
Confidence            9988888888888777765

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.93  E-value=3e-23  Score=210.57  Aligned_cols=395  Identities=17%  Similarity=0.199  Sum_probs=273.8

Q ss_pred             hhchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            7 VFGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      +.+.+-.+.-.+.-+..++. .+....+..++++.+|+++..+|.+..+.-+--++ +|++|.++||++.|+.|||||++
T Consensus         8 kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL   87 (467)
T COG2211           8 KLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLL   87 (467)
T ss_pred             cccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHH
Confidence            34444444334444555554 36677788889999999999999887777666666 89999999999988889999999


Q ss_pred             HHHHHHHHHHHHHhhcccch--hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFR--SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICG  162 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~--~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg  162 (493)
                      .+.+..++...++..+++.+  .+.....+..++.++++....+++.++.+++++  +++||.+..++.+...++|..+.
T Consensus        88 ~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~--d~~ER~~l~s~R~~~~~~g~~l~  165 (467)
T COG2211          88 WGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ--DPQERASLTSWRMVFASLGGLLV  165 (467)
T ss_pred             HHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcC--CHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888888777532  344455677778899999999999999999997  47999999999999999998877


Q ss_pred             HHHHHHhhc-------cccHHHHHHHHHHHHHHHHHHhhc-cccccccchhhhcccccCCCcccCCCCcccCCCCCcccc
Q 011112          163 SLLGGYALT-------NIEIDRIFLLFTVLPAIQLLSCGL-VKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEE  234 (493)
Q Consensus       163 ~~i~g~l~~-------~~gw~~~f~~~~~~~~l~~i~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (493)
                      ..+...+..       ..||+..-.+.++++.+..+.+++ .+|+..+.+.        +                   +
T Consensus       166 ~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~--------~-------------------~  218 (467)
T COG2211         166 AVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQP--------T-------------------K  218 (467)
T ss_pred             HHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcccc--------C-------------------c
Confidence            777665553       357888877777777777766654 6665532210        0                   0


Q ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcce
Q 011112          235 KYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVM  314 (493)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  314 (493)
                      +       +.+       .                      ++++   ++...+|||.+...++..++........++..
T Consensus       219 ~-------~~~-------~----------------------~~~~---~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~  259 (467)
T COG2211         219 T-------GVK-------L----------------------KLKD---SFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIM  259 (467)
T ss_pred             c-------ccc-------c----------------------cHHH---HHHHHHccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            0       000       0                      2232   23446788887766554444444444455566


Q ss_pred             eeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEee
Q 011112          315 FYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVL  394 (493)
Q Consensus       315 ~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l  394 (493)
                      .||.+..+|.++.+..........+.+++.+++.++.+|+|+|+++.++.++..++.+... +..       ..+..+++
T Consensus       260 ~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~-f~~-------~~~~~l~~  331 (467)
T COG2211         260 VYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLY-FTP-------AGSVVLIV  331 (467)
T ss_pred             heeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHH-hhc-------CcchHHHH
Confidence            7788888998888888887778888888899999999999999999999888887754332 211       11222222


Q ss_pred             ehhHHHHHHHH------hhHhHHHHHHhhc-CCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCC-ccchHHH
Q 011112          395 YGSALVDAVNQ------FKFMPFLILSGQL-CPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGS-FDNLLLG  466 (493)
Q Consensus       395 ~~~~~~~~~~~------~~~~~~~~~~~~~-~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~-~~~~~~~  466 (493)
                      ....+.....+      ++++|.-.-..|. ...+.+|..+|.+.++.++|.+++..+.|++.+.+|+.+.. .|.....
T Consensus       332 ~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~~~Q~~~al  411 (467)
T COG2211         332 VALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQSASAL  411 (467)
T ss_pred             HHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCHHHH
Confidence            22122211111      1222221112222 46789999999999999999999999999999999997644 3444444


Q ss_pred             HHHHHhhhhhh
Q 011112          467 ISIQALCTFIP  477 (493)
Q Consensus       467 ~~~~~~~~~~~  477 (493)
                      ..+..+..++|
T Consensus       412 ~gI~~~~~~~P  422 (467)
T COG2211         412 FGIRFLFIILP  422 (467)
T ss_pred             HHHHHHHHHHH
Confidence            44443333333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.93  E-value=1.9e-23  Score=213.53  Aligned_cols=339  Identities=17%  Similarity=0.081  Sum_probs=218.6

Q ss_pred             HHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCc---hhHHHHHHHHHHHHH
Q 011112           20 YFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKR---IPYLVISTVLSLVPW   94 (493)
Q Consensus        20 ~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~r---r~~ii~~~~l~~~~~   94 (493)
                      ||...+. ++....++.+++ ++|.|..++|+..+++.++..+ +|++|+++||++    ||   ++.+......  .. 
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g----~~~~~~~~~~~~~~~--~~-   84 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPS----QLIPALRLLALLTLL--FA-   84 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhc----chHHHHHHHHHHHHH--HH-
Confidence            4443343 455566666765 5899999999999999998877 899999999962    22   2232222111  11 


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011112           95 LILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIE  174 (493)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~g  174 (493)
                      ..+....   ++++.+++.|++.+++.+...+..++++.+..     ++|+++.+......++|..+||.+++++.+++|
T Consensus        85 ~~~~~~~---~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~-----~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g  156 (382)
T PRK11128         85 VAFWFGA---HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQ-----KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG  156 (382)
T ss_pred             HHHHHhc---ccHHHHHHHHHHHHHHHcccccHHHHHHHHHH-----hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            1122221   35777888999889887777777888877653     567888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhh
Q 011112          175 IDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRM  254 (493)
Q Consensus       175 w~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
                      ||..|++.++..++..+..++.||++++.+         +++           +     +          +         
T Consensus       157 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----------~-----~----------~---------  192 (382)
T PRK11128        157 EQAILWILTAGVASMLLGQLLRPTIMPQGE---------SRQ-----------Q-----E----------S---------  192 (382)
T ss_pred             hhHHHHHHHHHHHHHHHHHHccCCCCCccc---------ccc-----------c-----c----------c---------
Confidence            999998877544333333334454322110         000           0     0          0         


Q ss_pred             hhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHH
Q 011112          255 FKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARV  334 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~  334 (493)
                                           +.+   +.+.+.+|+|+++......++............+.|.. +.|+++.+.|....
T Consensus       193 ---------------------~~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~  247 (382)
T PRK11128        193 ---------------------AGW---PAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWS  247 (382)
T ss_pred             ---------------------ccc---chHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHH
Confidence                                 000   12335567888876554444333222222222344543 48999999999877


Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHH
Q 011112          335 VGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLIL  414 (493)
Q Consensus       335 ~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~  414 (493)
                      .+.++.++...+.+|+.||++.|+.+..+.++..+..+. ....         ++.+..+....+..++......+.+.+
T Consensus       248 ~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~l~g~~~~~~~~~~~~~  317 (382)
T PRK11128        248 LGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGL-MGST---------TALPWLIVIQILHCGTFTVCHLAAMRY  317 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888899999999999999988887776654221 1111         222222222333344444444445566


Q ss_pred             HhhcCCCCchHHHHHHHHHH-HhhhhhhhHhHHHHhHHhhc
Q 011112          415 SGQLCPPGIEGTLFALFMSI-SNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       415 ~~~~~p~~~~gt~~gl~~~~-~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ..+. +++++++.+++++.. ..+|..+|+.++|.+.|.+|
T Consensus       318 ~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g  357 (382)
T PRK11128        318 IAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG  357 (382)
T ss_pred             HHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6775 566678999988754 45677899999999999875

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.93  E-value=1.1e-23  Score=219.99  Aligned_cols=393  Identities=17%  Similarity=0.134  Sum_probs=232.2

Q ss_pred             HHHhHHH-hHHHHHHHHHHhhhCCC--------HhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHH
Q 011112           21 FTQGFRS-FVWTAVSYQLKDKLKFS--------PSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLS   90 (493)
Q Consensus        21 f~~g~~~-~~~~~~~~~l~~~~g~s--------~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~   90 (493)
                      ++.+++. ...... +.+.++++.+        ..+.++..+++.++..+ +|++|+++||+     +||+.++.+.++.
T Consensus        38 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-----grr~~~~~~~~~~  111 (481)
T TIGR00879        38 LMFGYDTGVIGGAL-ALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-----GRKKSLLIIALLF  111 (481)
T ss_pred             Hhcccccchhhhhh-hcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-----hhHHHHHHHHHHH
Confidence            4455554 443333 3445566766        88999999999999887 79999999995     6788888888888


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH---H
Q 011112           91 LVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG---G  167 (493)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~---g  167 (493)
                      .++..++...+.. .+++.+++.|++.|++.+...+...+++.|..+   +++|++++++...+..+|..+++.++   +
T Consensus       112 ~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~  187 (481)
T TIGR00879       112 VIGAILMGLAAFA-LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAP---KALRGALTSLYQLAITFGILVAYGFGSGKV  187 (481)
T ss_pred             HHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCC---hhhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            8887777554322 244578899999999999999999999999884   58999999999999999999999999   7


Q ss_pred             HhhccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhh
Q 011112          168 YALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNK  247 (493)
Q Consensus       168 ~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (493)
                      ...+..+||+.|++.++..++..+..+++||+++....+++....+  +..++..  ..++. .. +. .... ...+. 
T Consensus       188 ~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~-~~-~~-~~~~-~~~~~-  258 (481)
T TIGR00879       188 SLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEAR--KSLARLR--GTSGE-DK-EL-LDEL-ELIDI-  258 (481)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHH--HHHHHHh--CCCCC-cH-HH-HHHH-HHHHH-
Confidence            7777889999999966555444445566788754321100000000  0000000  00000 00 00 0000 00000 


Q ss_pred             hhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcc--cc-hHHHHHHHHHHHhcccCCCcceeeeeeccCCC
Q 011112          248 KNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQ--PE-ILRPMAWFFLAHVAVPNLSTVMFYYQTEILNL  324 (493)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~  324 (493)
                           .     ++           .-.+..++..+++++..++  +. ++...+..+.............+++ .+..|+
T Consensus       259 -----~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~  316 (481)
T TIGR00879       259 -----K-----RS-----------IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTI-FENAGV  316 (481)
T ss_pred             -----H-----HH-----------HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHH-HHHcCC
Confidence                 0     00           0000000011222222221  11 1111122221111111111111222 345789


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhh-eeccccccCccCceEeeehhHHHHHH
Q 011112          325 EASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVL-VSRMNLTVGISDKTMVLYGSALVDAV  403 (493)
Q Consensus       325 s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~-~~~~~~~~g~~~~~~~l~~~~~~~~~  403 (493)
                      +..+.+....+..++.+++.++.+++.||.++|+.+..+.++..+..+..... ....+. .........+....+....
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  395 (481)
T TIGR00879       317 STDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG-SSKSSGNVAIVFILLFIAF  395 (481)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC-cccchhHHHHHHHHHHHHH
Confidence            88778888888888888999999999999999998888766655543222110 100000 0000011111111111122


Q ss_pred             HHhhHhHH-HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          404 NQFKFMPF-LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       404 ~~~~~~~~-~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      .+....+. .+++.|..|++.|++++++.+...++|..+++.+.+.+.+..|+
T Consensus       396 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~  448 (481)
T TIGR00879       396 FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGV  448 (481)
T ss_pred             HHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            22223333 45678999999999999999999999999999999999887654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK15075 citrate-proton symporter; Provisional

Probab=99.93  E-value=1.9e-23  Score=217.31  Aligned_cols=366  Identities=12%  Similarity=0.049  Sum_probs=222.7

Q ss_pred             hhchhHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHH-HHHHHh--hH---hh-hhhhhhcccccccCCCCc
Q 011112            7 VFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFV-SAVAFF--PW---SI-KPLYGILSDCIPIKGRKR   79 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~-~s~~~l--~~---~~-~~~~G~lsDr~~~~g~~r   79 (493)
                      +-+++....+.+..|++.++........|.++++++.++++.+.. .+....  .+   .+ +++.|+++||+     +|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-----Gr   85 (434)
T PRK15075         11 ESKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-----GR   85 (434)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-----ch
Confidence            344555556667778899886333444566788899988776543 232222  22   23 57889999995     67


Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccchh----hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHH
Q 011112           80 IPYLVISTVLSLVPWLILGLNAFFRS----STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAM  155 (493)
Q Consensus        80 r~~ii~~~~l~~~~~~~~~~~~~~~~----~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~  155 (493)
                      |+.++.+.++..++.++++++++...    ....+++.|+++|++.+...+...+++.|..   |+++|++++++.....
T Consensus        86 r~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~---p~~~rg~~~~~~~~~~  162 (434)
T PRK15075         86 RKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA---TPGRKGFYTSWQSASQ  162 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC---CcccchHHHHHHHHHH
Confidence            88888999999999888888763211    0114678999999999888888889999988   4599999999999988


Q ss_pred             HHHHHHHHHHHHHhh--------ccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCC
Q 011112          156 AFGGICGSLLGGYAL--------TNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDD  227 (493)
Q Consensus       156 ~~G~~lg~~i~g~l~--------~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (493)
                      ++|..+|+.+++.+.        +++|||++|++..+...+........||+++..+         +++           
T Consensus       163 ~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~---------~~~-----------  222 (434)
T PRK15075        163 QVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLA---------RKH-----------  222 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHH---------hhh-----------
Confidence            888888888877663        4689999998754332111111112233221100         000           


Q ss_pred             CCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHH-HHHHHHHHhc
Q 011112          228 EDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRP-MAWFFLAHVA  306 (493)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~~  306 (493)
                      +     +                                         +.++.++   +..++++.+.. ....++....
T Consensus       223 ~-----~-----------------------------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  253 (434)
T PRK15075        223 R-----P-----------------------------------------SMREIFR---SLAANWRIVLAGMLMVAMTTVS  253 (434)
T ss_pred             c-----c-----------------------------------------ccccHHH---HHHHhHHHHHHHHHHHHHHHHH
Confidence            0     0                                         0000000   11122222211 1111111111


Q ss_pred             ccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccC
Q 011112          307 VPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVG  386 (493)
Q Consensus       307 ~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g  386 (493)
                      ........+.|+++..|++..+.++...+..++.+++.++.+++.||+++|+.+..+.++..+...+...... .     
T Consensus       254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-~-----  327 (434)
T PRK15075        254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV-A-----  327 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-c-----
Confidence            1112222355666668999988888888888888999999999999999999887765544322111111110 0     


Q ss_pred             ccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhh-hhhhhHhHHHHhHHhhcC
Q 011112          387 ISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNF-GSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~l-g~~~~~~i~g~l~~~~g~  455 (493)
                      .+................+........+..|..|++.|++++++.+.+.+. ++.++|.+.|.+.|..|.
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~  397 (434)
T PRK15075        328 APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD  397 (434)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence            011100000011111222222222346789999999999999997766665 578899999999998764

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.93  E-value=2.1e-22  Score=211.63  Aligned_cols=364  Identities=12%  Similarity=0.118  Sum_probs=231.9

Q ss_pred             HHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHh
Q 011112           21 FTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILG   98 (493)
Q Consensus        21 f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~   98 (493)
                      +..++. .+....+++|+++.+|+++.++|.+..+..+.-++ +|++|.++||.+.|..|||+|++.+.+...++..++.
T Consensus        16 ~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf   95 (473)
T PRK10429         16 FGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF   95 (473)
T ss_pred             hHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH
Confidence            444443 35666678888999999999999988877666565 8999999999988877889999999998888866665


Q ss_pred             hcccchh--hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc-----
Q 011112           99 LNAFFRS--STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT-----  171 (493)
Q Consensus        99 ~~~~~~~--~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~-----  171 (493)
                      ..++.+.  ....+.+...+..++.+...+++.++..|+++  +++||.+..++.....++|..+++.+...+.+     
T Consensus        96 ~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~--~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~  173 (473)
T PRK10429         96 SAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTL--DKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGG  173 (473)
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4442211  23344455556678888999999999999986  36899999999888888876666655544321     


Q ss_pred             --cccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhh
Q 011112          172 --NIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKK  248 (493)
Q Consensus       172 --~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (493)
                        ..+|+....+.+++.++..+.+ +..||++...+.        +.+           +     +         ++   
T Consensus       174 ~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~--------~~~-----------~-----~---------~~---  217 (473)
T PRK10429        174 DRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQ--------VSA-----------E-----G---------SH---  217 (473)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccc--------ccc-----------c-----c---------cC---
Confidence              2357777777666655544444 346665322100        000           0     0         00   


Q ss_pred             hhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHH
Q 011112          249 NQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASF  328 (493)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~  328 (493)
                          .                      +.++.+   ..+++||.++..+...++.............+|.+...+ ++..
T Consensus       218 ----~----------------------~~~~~~---~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~  267 (473)
T PRK10429        218 ----L----------------------TLKDIV---ALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADL  267 (473)
T ss_pred             ----C----------------------CHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHH
Confidence                0                      233322   234678777665544444333333333334455554444 4555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhH
Q 011112          329 LGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKF  408 (493)
Q Consensus       329 ~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~  408 (493)
                      .+.+.....++.+++.++.+++.||+|+|+.+..+.++..++.+........     +....+..+....+.....+...
T Consensus       268 ~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~l~g~~~~~~~  342 (473)
T PRK10429        268 FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA-----APHNALLIVIAGILLNIGTALFW  342 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHHHHHH
Confidence            6666666778888999999999999999999887776555443222111000     00111111111222222222223


Q ss_pred             hHHHHHHhhcCC-------CCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCC
Q 011112          409 MPFLILSGQLCP-------PGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISS  457 (493)
Q Consensus       409 ~~~~~~~~~~~p-------~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~  457 (493)
                      ....+++++.++       ++.+|..+|..+.+.++|..+++.+.|.+.+..|+..
T Consensus       343 ~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~~  398 (473)
T PRK10429        343 VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYVP  398 (473)
T ss_pred             HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            333456666644       6678889999999999999999999999999888853

>PRK10133 L-fucose transporter; Provisional

Probab=99.93  E-value=9.7e-23  Score=211.90  Aligned_cols=349  Identities=12%  Similarity=0.103  Sum_probs=226.6

Q ss_pred             HHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHH
Q 011112           16 ICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPW   94 (493)
Q Consensus        16 ~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~   94 (493)
                      +.+.+|+.++.......+.|.+++++|.|+.+.|+..+.+.+++.+ +++.|+++||+     +||+.++.+..+.+++.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-----G~r~~l~~g~~~~~~~~  105 (438)
T PRK10133         31 LCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITGLFLYALGA  105 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHH
Confidence            5566677787764444455666999999999999999999999987 79999999995     78889999999988888


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc-c-
Q 011112           95 LILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT-N-  172 (493)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~-~-  172 (493)
                      +++.... ..++++.+++.|+++|+|.+..++..+.++.|..+   +++|++.++.......+|..+|+.+++.+.. + 
T Consensus       106 ~l~~~~~-~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~---~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        106 ALFWPAA-EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP---ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            7653111 01357788999999999999999999999988653   3666667899999999999999999876540 0 


Q ss_pred             ------------------------ccHHHHHHHHHHHHHHHHHHhh--ccccccccchhhhcccccCCCcccCCCCcccC
Q 011112          173 ------------------------IEIDRIFLLFTVLPAIQLLSCG--LVKENRVSTKVLKEFSSSNGYHQVNGNESILD  226 (493)
Q Consensus       173 ------------------------~gw~~~f~~~~~~~~l~~i~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (493)
                                              .+||++|+....+..+..+...  ..||.+.+++           +          
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~-----------~----------  240 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH-----------S----------  240 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-----------c----------
Confidence                                    2566667543433222222222  2333211100           0          


Q ss_pred             CCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhc
Q 011112          227 DEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVA  306 (493)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~  306 (493)
                       +     +         ++       .                      +.   .++..+.+|+|.++...+..++....
T Consensus       241 -~-----~---------~~-------~----------------------~~---~~~~~~ll~~~~~~~~~l~~~~~~~~  273 (438)
T PRK10133        241 -D-----A---------KQ-------G----------------------SF---SASLSRLARIRHWRWAVLAQFCYVGA  273 (438)
T ss_pred             -c-----c---------cc-------c----------------------ch---hhhHHHHHhCchHHHHHHHHHHHHHH
Confidence             0     0         00       0                      00   11233456777765544333332222


Q ss_pred             ccCCCcceeee-eeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheecccccc
Q 011112          307 VPNLSTVMFYY-QTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTV  385 (493)
Q Consensus       307 ~~~~~~~~~~~-~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~  385 (493)
                      ........+.| .++..|+|+.+.++......++.++|.++.+++.||+++|+.+..+.++..+..+. ....       
T Consensus       274 ~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~-~~~~-------  345 (438)
T PRK10133        274 QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI-SAFA-------  345 (438)
T ss_pred             HHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH-HHHc-------
Confidence            11111122334 45668999999999989999999999999999999999999988876665443221 1111       


Q ss_pred             CccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          386 GISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       386 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                        +... .+....+..+..+..+.+.++...+..|+ +.+++.++.. ....|+.++|.+.|.+.|..|
T Consensus       346 --~~~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g  409 (438)
T PRK10133        346 --GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_pred             --CChH-HHHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence              1111 01111222233333444456677777665 4677888775 455778888899998888765

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.92  E-value=2.2e-23  Score=215.79  Aligned_cols=367  Identities=12%  Similarity=0.067  Sum_probs=216.3

Q ss_pred             chhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +++..+.+...+++..+. +.....++.++++++|+|+.++|...+.+.+...+ +|++|+++||+     +||+.++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-----g~r~~~~~~   82 (420)
T PRK09528          8 KNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-----GLKKHLLWI   82 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHH
Confidence            445566566677776664 46667777888988999999999999999999887 89999999996     466666665


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      ..+..+....+......+...........+.++..+.........+.+..++ ..++++..+|......++|..+|+.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~~~~~g~~i~~~~~  161 (420)
T PRK09528         83 ISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-VSRRSGFEYGRARMWGSLGWALCAFIA  161 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-HHhhccccchhhHHhhhHHHHHHHHHH
Confidence            4444333221111100000000111122222322222222222223333322 135678888888889999999999999


Q ss_pred             HHhhccccHHHHHHHHHHHHHHHHHHhhccc-cccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhh
Q 011112          167 GYALTNIEIDRIFLLFTVLPAIQLLSCGLVK-ENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKK  245 (493)
Q Consensus       167 g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (493)
                      |.+.+. +|+++|++.+++.++..+..++.+ |++++.+.+       +++           +     ++        ++
T Consensus       162 g~l~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----------~-----~~--------~~  209 (420)
T PRK09528        162 GILFNI-NPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-------NAL-----------G-----AN--------AS  209 (420)
T ss_pred             HHHHhc-CchHhHHHHHHHHHHHHHHHhcccccccchhhhc-------cch-----------h-----cc--------cc
Confidence            999874 899999988876665555444443 332221000       000           0     00        00


Q ss_pred             hhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeecc---C
Q 011112          246 NKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEI---L  322 (493)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~  322 (493)
                                                      +...++.++.+|||.++...++.+.............+.|..+.   .
T Consensus       210 --------------------------------~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (420)
T PRK09528        210 --------------------------------AVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATP  257 (420)
T ss_pred             --------------------------------cccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                            00112344567888765544322221111111111123333222   3


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHH
Q 011112          323 NLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDA  402 (493)
Q Consensus       323 g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~  402 (493)
                      +.+..+.|.+.....++..++.++.+++.||+++|+.+..+.++..+..+. ..+.         ++.+.......+...
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l-~~~~---------~~~~~~~~~~~l~g~  327 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIG-SGFA---------TGPLEVSILKLLHAF  327 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH-HHhc---------ccHHHHHHHHHHHHH
Confidence            566677888877777888899999999999999999988877766654322 1111         111111111222222


Q ss_pred             HHHhhHhHHHHHHhhcCCCCchHHHHHH-HHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          403 VNQFKFMPFLILSGQLCPPGIEGTLFAL-FMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       403 ~~~~~~~~~~~~~~~~~p~~~~gt~~gl-~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      ...........++.+..|++.+++.++. +++..++|..+++.++|.+.|.+|+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~  381 (420)
T PRK09528        328 EVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGF  381 (420)
T ss_pred             HHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            2222233345678888999999988766 6778889999999999999998774

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.92  E-value=1.9e-22  Score=210.90  Aligned_cols=352  Identities=10%  Similarity=0.007  Sum_probs=220.4

Q ss_pred             HHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHH
Q 011112           30 WTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTW  108 (493)
Q Consensus        30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~  108 (493)
                      ....+ .+.+++|.|.++.++..+.+.+...+ +|++|+++||+     +||+.++.+.++..++.+.+++.+    +++
T Consensus        39 ~~~~~-~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~----~~~  108 (455)
T TIGR00892        39 TVFFK-ELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-----GCRPVVIAGGLLASLGMILASFSS----NVI  108 (455)
T ss_pred             hhhHH-HHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-----CchHHHHhhHHHHHHHHHHHHHhh----hHH
Confidence            33444 44778999999999999888776655 89999999995     567788888888888877777764    344


Q ss_pred             HHH-HHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Q 011112          109 HLI-VLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPA  187 (493)
Q Consensus       109 ~l~-~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~  187 (493)
                      .+. ..|++.|++.+...++..+++.+..   + ++|+++.|+...+..+|..+++.+++.+.+.+|||+.|++.+++.+
T Consensus       109 ~l~~~~~~l~G~~~~~~~~~~~~~~~~~~---~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~  184 (455)
T TIGR00892       109 ELYLTAGFITGLGLAFNFQPSLTMLGKYF---Y-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLL  184 (455)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHHHH---H-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            444 4568889888876666667777766   2 7899999999999999999999999999999999999999887766


Q ss_pred             HHHHHhhcc-ccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCC
Q 011112          188 IQLLSCGLV-KENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKN  266 (493)
Q Consensus       188 l~~i~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (493)
                      +..+..+++ ++++.++..+.+    ++++    .+.    +. .. ++      ...+       .             
T Consensus       185 ~~~v~~~~~~~~~~~~~~~~~~----~~~~----~~~----~~-~~-~~------~~~~-------~-------------  224 (455)
T TIGR00892       185 HCCVCGALMRPVGPSQRVSKSK----SKEG----LPP----DG-ST-KK------LSKK-------S-------------  224 (455)
T ss_pred             HHHHHHHHhCCCCccccccccc----cccc----CCC----CC-cc-cc------cccc-------c-------------
Confidence            554443333 322211100000    0000    000    00 00 00      0000       0             


Q ss_pred             CchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 011112          267 NPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYT  346 (493)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~  346 (493)
                            ..+..++ ..+ .+.+++|.++......++............+.|..+ .|++..+.++...+..++.+++.++
T Consensus       225 ------~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~  295 (455)
T TIGR00892       225 ------TAEKINR-FLD-FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPS  295 (455)
T ss_pred             ------hhhhhhh-hcc-hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                  0000111 001 246678887765544343333332222233445444 7999999999877788888888899


Q ss_pred             HHHHHhcC--ChhHHHHHHH--HHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCC
Q 011112          347 YNGYLKRL--KLRRILLLTQ--VGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPG  422 (493)
Q Consensus       347 ~~~~~~~~--~~r~~l~~~~--~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~  422 (493)
                      .+++.||.  +.|+......  ++..+.. +.....         ++.+.++...++..+..+....+..+.+.+..|++
T Consensus       296 ~g~l~d~~~~~~~~~~~~~~~~~~~~l~~-ll~~~~---------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~  365 (455)
T TIGR00892       296 CGLIAGLKWIRPHVQYLFSFALLFNGLTH-LLCALA---------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ  365 (455)
T ss_pred             HHHHhcccccCHHHHHHHHHHHHHHHHHH-HHHHHh---------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH
Confidence            99999863  3343333222  2221211 111111         11111111222333333333334467788999999


Q ss_pred             chHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          423 IEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       423 ~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ++++.+|++++..++|+.+||.++|.+.+..|
T Consensus       366 ~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  397 (455)
T TIGR00892       366 RFSSAVGLVTIVECCAVLIGPPLAGRLVDATK  397 (455)
T ss_pred             HHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence            99999999999999999999999999988764

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.91  E-value=8.2e-22  Score=207.25  Aligned_cols=362  Identities=20%  Similarity=0.249  Sum_probs=249.3

Q ss_pred             hhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHH
Q 011112           10 VSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIST   87 (493)
Q Consensus        10 ~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~   87 (493)
                      .+....+....++..+.. +...+++.++. ++.-|+.+++.+..+..+|..+ +++.|.++||+     .||++++.+.
T Consensus         9 ~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-----drrrili~~~   82 (524)
T PF05977_consen    9 NRNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-----DRRRILILSQ   82 (524)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cchHHHHHHH
Confidence            333443445666666654 55666555544 5677999999999999999975 99999999995     6788888888


Q ss_pred             HHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           88 VLSLVPWLILGLN-AFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        88 ~l~~~~~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      ++..+....++.. .....+.+.+++.-++.+++.++..+..++++.|+++   +++..+++++.....++.-++||.+|
T Consensus        83 ~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~---~~~L~~A~al~s~~~niar~iGPalg  159 (524)
T PF05977_consen   83 LLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVP---KEDLPAANALNSISFNIARIIGPALG  159 (524)
T ss_pred             HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---HhhHHHHHHHHHHHHHHHHhccchHH
Confidence            7766554444322 1112356677788888999999999999999999995   47888999999999999999999999


Q ss_pred             HHhhccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhh
Q 011112          167 GYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKN  246 (493)
Q Consensus       167 g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (493)
                      |.+....|-.++|.+.++..++..+.....+.++++.+.                            +        +++ 
T Consensus       160 G~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~----------------------------~--------~e~-  202 (524)
T PF05977_consen  160 GILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSL----------------------------P--------RER-  202 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc----------------------------c--------hhh-
Confidence            999999999999998886655544333333322111100                            0        000 


Q ss_pred             hhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCH
Q 011112          247 KKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEA  326 (493)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~  326 (493)
                                                +.+++++.++-.   .++|.+...++..++.++........++.+..+.+|.++
T Consensus       203 --------------------------~~~~l~~G~ryv---~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a  253 (524)
T PF05977_consen  203 --------------------------FFSALREGLRYV---RSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGA  253 (524)
T ss_pred             --------------------------hhhhHHHHHHHH---hcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcH
Confidence                                      011233333222   234544443332233222222233345666677799999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHh
Q 011112          327 SFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQF  406 (493)
Q Consensus       327 ~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~  406 (493)
                      ..+|++....++|+++|+++..++.+|.+.++++..+.+..+++.+. +.+.         ++.+..+...++.+++...
T Consensus       254 ~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~-lal~---------~~~~~~~~~l~l~G~~~~~  323 (524)
T PF05977_consen  254 SGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLL-LALS---------PSFWLALIALFLAGAAWII  323 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHH-Hhcc---------hHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888777766654221 1111         1222222222333333334


Q ss_pred             hHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCC
Q 011112          407 KFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       407 ~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                      ......+.+++..|++.+|+.++++++..+.+..+|+++.|.+.+.+|..
T Consensus       324 ~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~  373 (524)
T PF05977_consen  324 ANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVR  373 (524)
T ss_pred             HHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            44455678999999999999999999999999999999999999998764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.91  E-value=1.9e-22  Score=201.69  Aligned_cols=342  Identities=24%  Similarity=0.293  Sum_probs=243.1

Q ss_pred             HHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHH
Q 011112           16 ICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVP   93 (493)
Q Consensus        16 ~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~   93 (493)
                      +...++..++.. ......+.+ .+++|.+.++.++..+...++..+ +|++|+++||+     +||+.+..+.++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-----g~r~~~~~~~~~~~~~   77 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLL-AEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-----GRRRVLLLGLLLFALG   77 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----CCchhhHHHHHHHHHH
Confidence            445566777654 555555555 556899999999999999888776 89999999995     5667888888888888


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 011112           94 WLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI  173 (493)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~  173 (493)
                      ...+...+    +++.+.+.|++.+++.+...+..++++.|..+   +++|++.+++......+|..+|+.+++.+.++.
T Consensus        78 ~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  150 (352)
T cd06174          78 SLLLAFAS----SLWLLLVGRFLLGLGGGALYPAAAALIAEWFP---PKERGRALGLFSAGFGLGALLGPLLGGLLAESL  150 (352)
T ss_pred             HHHHHHhc----cHHHHHHHHHHHHcccccccHhHHHHHHHhCC---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88777664    56778899999999999999999999999985   489999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhh
Q 011112          174 EIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKR  253 (493)
Q Consensus       174 gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (493)
                      +||+.+++.+++.++..+...+.+     +                                                  
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~-----~--------------------------------------------------  175 (352)
T cd06174         151 GWRWLFLILAILGLLLALLLLFLL-----R--------------------------------------------------  175 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-----H--------------------------------------------------
Confidence            999999988876665554444333     1                                                  


Q ss_pred             hhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHH
Q 011112          254 MFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTAR  333 (493)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~  333 (493)
                                                            +++...+..++............+.+..+..|.+..+.+...
T Consensus       176 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (352)
T cd06174         176 --------------------------------------LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLL  217 (352)
T ss_pred             --------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence                                                  000000000010111111111223344454688999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCChhH-HHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHH
Q 011112          334 VVGWVGLMLGTYTYNGYLKRLKLRR-ILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFL  412 (493)
Q Consensus       334 ~~~~~~~~l~~~~~~~~~~~~~~r~-~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~  412 (493)
                      ....++.+++.++.+++.||.++|+ .+..+.++..+..+... ..         ++.........+.............
T Consensus       218 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---------~~~~~~~~~~~~~g~~~~~~~~~~~  287 (352)
T cd06174         218 SLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-LA---------PSLALLLVALLLLGFGLGFAFPALL  287 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-Hh---------ccHHHHHHHHHHHHHHHhccchhHH
Confidence            8899999999999999999999998 88777777666533221 11         1111111112222233333344456


Q ss_pred             HHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhh
Q 011112          413 ILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFL  481 (493)
Q Consensus       413 ~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (493)
                      ++..|..|+++|++.+|+.+...+++..+++.+.+.+.+..|+.        ..+.+.+++.++..+..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~--------~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG--------GVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc--------hHHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999998865432        23444555555554444

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00898 2A0119 cation transport protein

Probab=99.91  E-value=1.5e-22  Score=214.56  Aligned_cols=379  Identities=13%  Similarity=0.096  Sum_probs=236.7

Q ss_pred             HHHHhhhCCC---HhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHH
Q 011112           35 YQLKDKLKFS---PSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHL  110 (493)
Q Consensus        35 ~~l~~~~g~s---~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l  110 (493)
                      +.+.+|+|++   ..+.++..+++.+++.+ .+++|+++||+     +||+.++.+.++..++.+++++++    +++.+
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-----Grr~~~~~~~~~~~i~~~~~~~~~----~~~~~  183 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-----GRKKVLLLSTLVTAVSGVLTAFSP----NYTVF  183 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-----cchHHHHHHHHHHHHHHHHHHHcc----cHHHH
Confidence            4457789999   89999999999999988 78999999995     677888888888888888877765    57788


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q 011112          111 IVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQL  190 (493)
Q Consensus       111 ~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~  190 (493)
                      ++.|++.|++.+...+...+++.|..+   +++|+++.++......+|.++++.+++.+.+   ||+.|++.+++.++..
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~---~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~  257 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLP---KKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFF  257 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999884   5889999999999999999999999877654   9999999887766666


Q ss_pred             HHhhccccccccchhhh--c-cc-ccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCC
Q 011112          191 LSCGLVKENRVSTKVLK--E-FS-SSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKN  266 (493)
Q Consensus       191 i~~~~~~e~~~~~~~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (493)
                      +..+++||++++...+.  + +. .+++..+.++.+   ..+     +.  ... ...+       .             
T Consensus       258 ~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~---~~~-----~~--~~~-~~~~-------~-------------  306 (505)
T TIGR00898       258 LLSWFVPESPRWLISQGRIEEALKILQRIAKINGKK---LPA-----EV--LSL-SLEK-------D-------------  306 (505)
T ss_pred             HHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCC---CCH-----HH--Hhh-hhhh-------h-------------
Confidence            66677899876542111  0 00 000000000000   000     00  000 0000       0             


Q ss_pred             CchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 011112          267 NPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYT  346 (493)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~  346 (493)
                             . +.++.....++++++|+++...+..++.+............+.+ .++.+..   .......+..+.+.++
T Consensus       307 -------~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~i~~~~~  374 (505)
T TIGR00898       307 -------L-SSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLG-NLGGNIY---LDLFISGLVELPAKLI  374 (505)
T ss_pred             -------h-hhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCChH---HHHHHHHHHHHHHHHH
Confidence                   0 00000013456677777655443322212211111111122322 2444432   2233455667778888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHH
Q 011112          347 YNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGT  426 (493)
Q Consensus       347 ~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt  426 (493)
                      .+++.||+++|+.+..+.++..++.+. +.....       ...+.......+..+.....+....++..|.+|++.|++
T Consensus       375 ~~~l~dr~grr~~~~~~~~~~~~~~l~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~  446 (505)
T TIGR00898       375 TLLLIDRLGRRYTMAASLLLAGVALLL-LLFVPV-------DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNL  446 (505)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHcCC-------CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhh
Confidence            889999999999988887776665332 222110       111111111122222222223334678899999999999


Q ss_pred             HHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhcccCCCC
Q 011112          427 LFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKGAT  489 (493)
Q Consensus       427 ~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  489 (493)
                      ++|+.++...+|+.++|.+.+ +.+. +.        ...+.+.+++.++..+...++||+++
T Consensus       447 ~~g~~~~~~~ig~~i~p~i~~-~~~~-~~--------~~~~~~~~~~~~~~~~~~~~lpet~~  499 (505)
T TIGR00898       447 GVGVCSTMARVGSIISPFLVY-LGEK-WL--------FLPLVLFGGLALLAGILTLFLPETKG  499 (505)
T ss_pred             hHhHHHHHHHHHHHHHhHHHH-HHHH-HH--------hhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            999999999999999999888 4432 21        12234444555555555567787665

>TIGR00889 2A0110 nucleoside transporter

Probab=99.91  E-value=6.5e-22  Score=204.55  Aligned_cols=351  Identities=11%  Similarity=0.054  Sum_probs=215.9

Q ss_pred             HHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHH
Q 011112           17 CLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPW   94 (493)
Q Consensus        17 ~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~   94 (493)
                      ...+|+..+. ++...++++++++++|.|.+|+|++.+++.+...+ +|++|.++||+    .|||+.+..+.+...++.
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~----g~~r~~~~~~~~~~~~~~   83 (418)
T TIGR00889         8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW----LSAQKVYAVCHFAGALLL   83 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHHH
Confidence            3445555544 46667888898889999999999999999998877 89999999995    256777777777766666


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh-----hchhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011112           95 LILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKS-----ERAAFAGDLQSLSWLAMAFGGICGSLLGGYA  169 (493)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~-----~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l  169 (493)
                      ....+.+    +++.+.+.|.+.+++.+...+..+++..+...+     .+...|.+..|      ++|.++|+.++|.+
T Consensus        84 ~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l  153 (418)
T TIGR00889        84 FFAAQVT----TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL  153 (418)
T ss_pred             HHHHHhc----CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence            5555543    456667788787877666666666665433220     01123444444      47888999999988


Q ss_pred             hccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhh
Q 011112          170 LTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKN  249 (493)
Q Consensus       170 ~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (493)
                      .....|+ .|++.+++.++..+..+++||+++.+++          +           +     ++      .  +    
T Consensus       154 ~~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~~~~----------~-----------~-----~~------~--~----  194 (418)
T TIGR00889       154 DIELSNI-QLYITAGSSALLGVFALTLPDIPVAKST----------A-----------K-----MS------I--K----  194 (418)
T ss_pred             cccchhH-HHHHHHHHHHHHHHHHhcCCCCCCCccc----------c-----------c-----cC------H--H----
Confidence            4333354 4666666655555555567876432210          0           0     00      0  0    


Q ss_pred             hhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCC----
Q 011112          250 QKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLE----  325 (493)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s----  325 (493)
                         +                      ..+.   +..+.+|+|+++...+..++............+.|..+ .|.+    
T Consensus       195 ---~----------------------~~~~---~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~  245 (418)
T TIGR00889       195 ---V----------------------MLGL---DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFA  245 (418)
T ss_pred             ---H----------------------Hhhh---hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hccccccc
Confidence               0                      0000   12345678887655444443222111111111223322 3433    


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHH
Q 011112          326 ----ASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVD  401 (493)
Q Consensus       326 ----~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~  401 (493)
                          ....+.......++.+++.+..+++.||+++|+++..+.++..+..... ......     ....+.......+..
T Consensus       246 ~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~-~~~~~~-----~~~~~~l~l~~~l~g  319 (418)
T TIGR00889       246 DSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFF-AYGDPE-----YFGYALLFLSMIVYG  319 (418)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHcCcc-----hhhHHHHHHHHHHHH
Confidence                3566777778888888999999999999999999998888776643221 111100     000111111112222


Q ss_pred             HHHHhhHhHHHHHHhhcCCCCchHHHHHHHH-HHHhhhhhhhHhHHHHhHHhhcC
Q 011112          402 AVNQFKFMPFLILSGQLCPPGIEGTLFALFM-SISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~-~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      ............++.|..|++.+++++|+.+ ...++|..+||.++|.+.|++|.
T Consensus       320 ~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~  374 (418)
T TIGR00889       320 CAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA  374 (418)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            2222223333567899999999999999997 56789999999999999998763

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.91  E-value=6.7e-23  Score=212.76  Aligned_cols=352  Identities=19%  Similarity=0.222  Sum_probs=245.8

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhc-ccc-h
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLN-AFF-R  104 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~-~~~-~  104 (493)
                      .....+.+++.+.+|+++..+|.+..+..+-.++ +|+.|.++||.+.|..||||+++.+.++.+++..++... |.. +
T Consensus        19 ~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~   98 (428)
T PF13347_consen   19 LLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLS   98 (428)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhh
Confidence            4455677888999999999999987777665555 899999999999887799999999999999998887766 411 1


Q ss_pred             --hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-------cH
Q 011112          105 --SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI-------EI  175 (493)
Q Consensus       105 --~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~-------gw  175 (493)
                        .....+.+..++..++.....++..++..|+++  ++++|.+..+.......+|..+...+.+.+.+..       +|
T Consensus        99 ~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~--~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~  176 (428)
T PF13347_consen   99 FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTP--DPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY  176 (428)
T ss_pred             hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccc--cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence              122334566666688999999999999999986  3589999999999999999987777777665422       68


Q ss_pred             HHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhh
Q 011112          176 DRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRM  254 (493)
Q Consensus       176 ~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (493)
                      ++...+.+++.++..+.+ +..||++++.+.        +                            +++       . 
T Consensus       177 ~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~--------~----------------------------~~~-------~-  212 (428)
T PF13347_consen  177 RWMALVLAIVGLVFFLITFFFVKERSVEVTE--------Q----------------------------EKK-------I-  212 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhhheeeeccccccc--------c----------------------------ccc-------c-
Confidence            998888887776665543 557772221100        0                            000       0 


Q ss_pred             hhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHH
Q 011112          255 FKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARV  334 (493)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~  334 (493)
                                           +.++   .+++.+|||.+....+..++........+....+|.++.+|.+ +..+....
T Consensus       213 ---------------------~~~~---~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~  267 (428)
T PF13347_consen  213 ---------------------SLRD---SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFML  267 (428)
T ss_pred             ---------------------cccc---chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHH
Confidence                                 2222   2445678888776665555545555444555567777767776 45666667


Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHH
Q 011112          335 VGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLIL  414 (493)
Q Consensus       335 ~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~  414 (493)
                      ...++.+++.++++++.||+|+|+.+..+.++..+..+.. .+...       .+.+..+....+.....+..+....++
T Consensus       268 ~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  268 IFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLL-FFLGP-------GSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHH-HHHHh-------hhHHHHHHHHHHhHhhhcccccccccc
Confidence            7788889999999999999999999999988887764332 22210       122211112222222222222222345


Q ss_pred             HhhcCC-------CCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCC
Q 011112          415 SGQLCP-------PGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSG  458 (493)
Q Consensus       415 ~~~~~p-------~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~  458 (493)
                      .+|..+       ++.+|..+|.+++..+++..+++.+.+.+.+..|+...
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~  390 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDAN  390 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCC
Confidence            555544       56789999999999999999999999999998888654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.91  E-value=2.5e-22  Score=206.18  Aligned_cols=361  Identities=14%  Similarity=0.100  Sum_probs=221.4

Q ss_pred             hHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHH
Q 011112           11 SFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTV   88 (493)
Q Consensus        11 ~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~   88 (493)
                      +..|.+...+++.... +.....++.++++++|.|+.+.|...++..+...+ +|++|+++||+     +||+.++.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-----grr~~~~~~~~   76 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-----GLKKHLLWIIS   76 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHH
Confidence            3455565666665554 45666777888888999999999999999998887 89999999996     45666655544


Q ss_pred             HHHHHHHHH---hhcccc-hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112           89 LSLVPWLIL---GLNAFF-RSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL  164 (493)
Q Consensus        89 l~~~~~~~~---~~~~~~-~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~  164 (493)
                      ..++.....   ...+.. ........+.+++.+++.+...+..+++..|..     ++++...|......++|.++|+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~g~~~g~~  151 (396)
T TIGR00882        77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS-----RNSNFEYGKARMFGCVGWALCAS  151 (396)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh-----hhcccccchhhhhcccHHHHHHH
Confidence            443333221   111100 011223345566777777777666666665543     23445667777888999999999


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHhhc-cccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhh
Q 011112          165 LGGYALTNIEIDRIFLLFTVLPAIQLLSCGL-VKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKR  243 (493)
Q Consensus       165 i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (493)
                      ++|.+.+ .+||++|++.+++.++..+..++ .||++++++. .      +++          +++    +        +
T Consensus       152 ~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~----------~~~----~--------~  201 (396)
T TIGR00882       152 IAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATV-A------NAL----------GAN----A--------S  201 (396)
T ss_pred             HHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhh-h------ccc----------ccc----c--------C
Confidence            9998876 49999999988777766654444 3333221110 0      000          000    0        0


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccC-
Q 011112          244 KKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEIL-  322 (493)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-  322 (493)
                      ++                              +.    ++..+.+|||+++...+..+.............+.|.++.. 
T Consensus       202 ~~------------------------------~~----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~  247 (396)
T TIGR00882       202 AF------------------------------SL----KLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFA  247 (396)
T ss_pred             CC------------------------------CH----HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            00                              11    13456678888765544333222211111111233433332 


Q ss_pred             --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHH
Q 011112          323 --NLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALV  400 (493)
Q Consensus       323 --g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~  400 (493)
                        +.+....|.......+...++....+++.||+++|+.+.++.++..+.... ....         ++.+.......+.
T Consensus       248 ~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~-~~~~---------~~~~~~~~~~~l~  317 (396)
T TIGR00882       248 TPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIG-SSFA---------TTALEVVILKMLH  317 (396)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH-HHhc---------CChHHHHHHHHHH
Confidence              556667788777777888888888999999999999988887766654221 1111         1111111112222


Q ss_pred             HHHHHhhHhHHHHHHhhcCCCCchHHHHHH-HHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          401 DAVNQFKFMPFLILSGQLCPPGIEGTLFAL-FMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl-~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      .............+..+..|++.+++.++. ++...++|+.+++.++|.+.|.+|+
T Consensus       318 g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~  373 (396)
T TIGR00882       318 AFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGF  373 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence            222222222233456777888888888776 6788999999999999999998775

>PRK09848 glucuronide transporter; Provisional

Probab=99.91  E-value=1.4e-21  Score=204.03  Aligned_cols=381  Identities=13%  Similarity=0.106  Sum_probs=227.9

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcc-cch-
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNA-FFR-  104 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~-~~~-  104 (493)
                      +....+++|+++++|++..++|.+.++..+..++ +|++|.++||++.|+.|||++++.+.+...+...++...+ ..+ 
T Consensus        26 ~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (448)
T PRK09848         26 MGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSH  105 (448)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCc
Confidence            4445566788999999999999999888887776 8999999999987766788898877776655544433222 111 


Q ss_pred             -hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHH-----HHHHHHHHHHHHhhccc--cHH
Q 011112          105 -SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMA-----FGGICGSLLGGYALTNI--EID  176 (493)
Q Consensus       105 -~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~-----~G~~lg~~i~g~l~~~~--gw~  176 (493)
                       ......++...+.+++.+...++..++..++++  ++++|.+..++...+.+     +|..++|.+++...+..  +|.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~--~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~  183 (448)
T PRK09848        106 SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQ--QPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYH  183 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence             122233444556678888888899999888876  35788888777654433     45555666655432211  121


Q ss_pred             HHHHHHHHHHHHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhh
Q 011112          177 RIFLLFTVLPAIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMF  255 (493)
Q Consensus       177 ~~f~~~~~~~~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (493)
                      ....+.+++..+..+. ....||+.+.++                             +          +       .  
T Consensus       184 ~~~~~~~v~~~~~~~~~~~~~~e~~~~~~-----------------------------~----------~-------~--  215 (448)
T PRK09848        184 FWTIVLAIAGMVLYFICFKSTRENVVRIV-----------------------------A----------Q-------P--  215 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcEeccCCCc-----------------------------c----------C-------C--
Confidence            1112222222222222 223455432110                             0          0       0  


Q ss_pred             hhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHH
Q 011112          256 KIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVV  335 (493)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~  335 (493)
                                          +.++   .++..+|||.+....+..++............++|.++.+|.++...++....
T Consensus       216 --------------------~~~~---~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  272 (448)
T PRK09848        216 --------------------SLKI---SLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQ  272 (448)
T ss_pred             --------------------CHHH---HHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHH
Confidence                                1122   23456788887765544444333333333445677777788877655555555


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHH
Q 011112          336 GWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILS  415 (493)
Q Consensus       336 ~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  415 (493)
                      ..++.+++.++.+++.+|+++|+.+.++.++..++.+. +....       ..+.+.......+..........+..++.
T Consensus       273 ~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~-~~~~~-------~~~~~~~~~~~~l~g~G~~~~~~~~~al~  344 (448)
T PRK09848        273 NLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLL-FFWVS-------VWSLPVALVALAIASIGQGVTMTVMWALE  344 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH-HHHcC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888999999999999999999888776655322 22111       01111111111122222223333445666


Q ss_pred             hhcCCC-------CchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCc------cchHHHH-HHHHhhhhhhhhhh
Q 011112          416 GQLCPP-------GIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSF------DNLLLGI-SIQALCTFIPIAFL  481 (493)
Q Consensus       416 ~~~~p~-------~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~------~~~~~~~-~~~~~~~~~~~~~~  481 (493)
                      ++..|+       +.+|..+|+++...++|..+|+.+.+.+.+..|+....-      ......+ .+.+++.+++.++.
T Consensus       345 ~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~  424 (448)
T PRK09848        345 ADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIMGIRTSIALVPCGFMLLAFVII  424 (448)
T ss_pred             HHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777664       357999999999999999999999999998888753211      1222332 33444455555555


Q ss_pred             hcccCCCC
Q 011112          482 FLIPKGAT  489 (493)
Q Consensus       482 ~~l~~~~~  489 (493)
                      ...|-++|
T Consensus       425 ~~y~l~~~  432 (448)
T PRK09848        425 WFYPLTDK  432 (448)
T ss_pred             HHeeCCHH
Confidence            56664433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.91  E-value=1.5e-22  Score=204.93  Aligned_cols=348  Identities=14%  Similarity=0.087  Sum_probs=216.8

Q ss_pred             HHHHHHHHHHhHHHhHHHHHHH-HHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHH
Q 011112           14 WLICLIYFTQGFRSFVWTAVSY-QLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSL   91 (493)
Q Consensus        14 ~~~~~~~f~~g~~~~~~~~~~~-~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~   91 (493)
                      ++..+.++..........++.| ++++++|+|..+.++..+++.+++.+ ++++|+++||+     +||+.++.+.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~   78 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-----GPRYTTTLSLLLLA   78 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHH
Confidence            4345555555555444445555 58889999999999999999999887 79999999995     67778888888888


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011112           92 VPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT  171 (493)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~  171 (493)
                      ++.+.+++.+.   +++.+++.|++++++.+.. ++..+++.|..   |+++|+++.++.....++|..+++.+++.+..
T Consensus        79 i~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        79 IPCLWAGLAVQ---SYSVLLLLRLFIGIAGGSF-ASCMPWISFFF---PKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHHHHhh---hHHHHHHHHHHHHHhchhh-HhHHHHHHHhc---CHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            88887776531   4677888999999886544 55678888887   45899999999998888888888888776654


Q ss_pred             ----------cccHHHHHHH-HHHHHHHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhh
Q 011112          172 ----------NIEIDRIFLL-FTVLPAIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIS  239 (493)
Q Consensus       172 ----------~~gw~~~f~~-~~~~~~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (493)
                                +.+||+.|++ .+++..+..+. ..+.+|++++++++ +       + .+..+     +.    +     
T Consensus       152 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~-~~~~~-----~~----~-----  208 (366)
T TIGR00886       152 SLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPAT-G-------K-LSFKG-----AR----W-----  208 (366)
T ss_pred             HHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccc-h-------h-ccccc-----cc----c-----
Confidence                      3489999944 34444443333 33455544322100 0       0 00000     00    0     


Q ss_pred             hhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeee
Q 011112          240 TKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQT  319 (493)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  319 (493)
                           +                              ..++..++.++.+++|+++...+..++............+.|.+
T Consensus       209 -----~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (366)
T TIGR00886       209 -----S------------------------------VGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFK  253 (366)
T ss_pred             -----c------------------------------ccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0                              00011113345567777665544333322222222333455667


Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHH
Q 011112          320 EILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSAL  399 (493)
Q Consensus       320 ~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~  399 (493)
                      +.+|+++.+.+.......+..+++.++.+++.||+++|+.+..+......+..... .....     ............+
T Consensus       254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~  327 (366)
T TIGR00886       254 DQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVV-LGLVS-----PLSLAVFIVLFVA  327 (366)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHH-hcCCC-----cchHHHHHHHHHH
Confidence            77899999999887777888888999999999999998877766555444322211 11100     0011111111111


Q ss_pred             HHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhh
Q 011112          400 VDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFG  438 (493)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg  438 (493)
                      .....+....+......+..| +++|+.+|++++++++|
T Consensus       328 ~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       328 LFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            112222222334455666665 69999999999988876

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.91  E-value=4.8e-23  Score=216.13  Aligned_cols=370  Identities=14%  Similarity=0.071  Sum_probs=227.6

Q ss_pred             hhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 011112           40 KLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQN  118 (493)
Q Consensus        40 ~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~  118 (493)
                      ++|++.++.|.+.+.+.+++.+ +++.|+++||+     +||+.+..+.++..++.+++.....  .+++.+++.|+++|
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~~~G  142 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-----VFKWSIGIGMFLSSVISIVIPWAAG--GGIALVVFCRVIQG  142 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-----CcchhhHHHHHHHHHHHHHHHHHHH--cCchHHHHHHHHHH
Confidence            6899999999999999999987 79999999995     5677777887777777665543311  23556889999999


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHHHhhc-c
Q 011112          119 LGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN-IEIDRIFLLFTVLPAIQLLSCGL-V  196 (493)
Q Consensus       119 ~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~-~gw~~~f~~~~~~~~l~~i~~~~-~  196 (493)
                      ++.+...+...+++.|..   |+++|++++++...+..+|.++++.+++++.+. .+||++|++.+++.++..+.+++ .
T Consensus       143 ~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       143 LAQGSVSPATHKIIVKWA---PPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFP  219 (465)
T ss_pred             HhcccchhhHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHh
Confidence            999999999999999887   458999999999999999999999999999988 49999999998877766655543 4


Q ss_pred             ccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhh
Q 011112          197 KENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHS  276 (493)
Q Consensus       197 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (493)
                      +|+|+.+++..+    +|++..++.    .++..           . ++                              +
T Consensus       220 ~~~p~~~~~~~~----~~~~~i~~~----~~~~~-----------~-~~------------------------------~  249 (465)
T TIGR00894       220 ADDPSIHPCISK----FEKKYINSS----LQGQK-----------G-ST------------------------------R  249 (465)
T ss_pred             cCCcccCCCCCH----HHHHHHHhh----ccccc-----------C-CC------------------------------C
Confidence            554433210000    000000000    00000           0 00                              0


Q ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 011112          277 LKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKL  356 (493)
Q Consensus       277 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~  356 (493)
                      .+   .++++.+++|.++...+..+..+.........++.|+.+.+|++..+.|+......++.+++.++.|++.||.++
T Consensus       250 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~  326 (465)
T TIGR00894       250 QS---LPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKS  326 (465)
T ss_pred             CC---CCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00   023345677777765544444333332223334566667789999999998777788888888888888887543


Q ss_pred             hHH--------HHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHH
Q 011112          357 RRI--------LLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLF  428 (493)
Q Consensus       357 r~~--------l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~  428 (493)
                      |+.        +..+....... ...+.... .     .......+....+..+..............+..|+ ..|+.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~  398 (465)
T TIGR00894       327 SKTLSLTAARKIFNGIGGLGPG-IFAYALPY-L-----SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIK  398 (465)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH-c-----CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHH
Confidence            311        11111111111 00001100 0     01111111111122222222222223344455554 889999


Q ss_pred             HHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhccc
Q 011112          429 ALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIP  485 (493)
Q Consensus       429 gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  485 (493)
                      |+.++.++++..++|.+.|.+.+..+     ...+...+.+.+.+.+++.++...++
T Consensus       399 g~~~~~~~l~~~i~p~l~g~~~~~~~-----~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       399 GITGLPGFIGGLIASTLAGNILSQDS-----KNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HHHHHHHHHHHHHHHHhhheeeCCCC-----chHHHHHHHHHHHHHHHHHHHeeeee
Confidence            99999998888888888777765321     12244555566666666655544444

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.91  E-value=6.9e-22  Score=229.09  Aligned_cols=330  Identities=12%  Similarity=0.044  Sum_probs=217.5

Q ss_pred             hhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH---HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhh
Q 011112           46 SASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI---STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGS  121 (493)
Q Consensus        46 ~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~---~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~  121 (493)
                      ...++..+++.+++.+ +|+.|+++||+     +||+.+..   ..+..++..+.....    .+++.++++|+++|++.
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-----~rk~~~~~~~~~~~~~~~~~~~~~~~----~s~~~l~~~~~l~gi~~  122 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-----DKAKLAKILKFAEIGIAALAIYGFHL----NSVPLLFAALFLMGIHS  122 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-----cHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHH
Confidence            3467777788899876 89999999995     56655422   222222222221222    25788999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhccccccc
Q 011112          122 AMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRV  201 (493)
Q Consensus       122 ~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~  201 (493)
                      +...+...+++.|+.+   +++|++++|+...+.++|.++||+++|++.+..+|++.|...++..++..++++++|++++
T Consensus       123 a~~~p~~~a~l~~~~~---~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (1140)
T PRK06814        123 ALFGPIKYSILPDHLN---KDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGN  199 (1140)
T ss_pred             HhhchHHHHhhHhhcC---ccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            9999999999999995   4899999999999999999999999999999999999985554444444445556666543


Q ss_pred             cchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHH
Q 011112          202 STKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAI  281 (493)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (493)
                      ....         .+          .+     .                  .                      ..++..
T Consensus       200 ~~~~---------~~----------~~-----~------------------~----------------------~~~~~~  215 (1140)
T PRK06814        200 AAPD---------LK----------ID-----R------------------N----------------------IIRSTI  215 (1140)
T ss_pred             CCCC---------Ce----------ec-----c------------------c----------------------hHHHHH
Confidence            2210         00          00     0                  0                      011111


Q ss_pred             HHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Q 011112          282 YSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILL  361 (493)
Q Consensus       282 ~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~  361 (493)
                      ..+....++|.++...+..++.+..........+.|..+.+|.++...|++.....++.++|+++.+++.++...++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~  295 (1140)
T PRK06814        216 TLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVP  295 (1140)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeeh
Confidence            23444567787776554433333333333334566777778999999999988899999999999999998877666665


Q ss_pred             HHHHHHHHHhhhhhhh-eecc--ccc-------cCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHH
Q 011112          362 LTQVGLSILSFLDIVL-VSRM--NLT-------VGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALF  431 (493)
Q Consensus       362 ~~~~~~~~~~l~~~~~-~~~~--~~~-------~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~  431 (493)
                      .+.++..+..+..... ....  ...       ...+..+.+....++..+..+....+..+++.+.+|++.+|+.+|+.
T Consensus       296 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~  375 (1140)
T PRK06814        296 IGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAAN  375 (1140)
T ss_pred             HHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHH
Confidence            5555444432211111 0000  000       00011111111122333344445556778899999999999999999


Q ss_pred             HHHHhhhhhhhHhHHHHhHH
Q 011112          432 MSISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       432 ~~~~~lg~~~~~~i~g~l~~  451 (493)
                      +++.+++..+++.+++.+.+
T Consensus       376 ~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        376 NVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888875

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.90  E-value=2.4e-22  Score=204.55  Aligned_cols=340  Identities=15%  Similarity=0.120  Sum_probs=214.0

Q ss_pred             HHHHHHhhhC--CCHhhHHHHHHHHH--hhH---hh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccch
Q 011112           33 VSYQLKDKLK--FSPSASQFVSAVAF--FPW---SI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFR  104 (493)
Q Consensus        33 ~~~~l~~~~g--~s~~~~g~~~s~~~--l~~---~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~  104 (493)
                      ..+++.+++.  .++++.+...+...  ..+   .+ +|++|+++||+     +||+.++.+.++..++.+++++.++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~~~~~~~~~~~~~~~~~~~   89 (394)
T TIGR00883        15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-----GRKKTLVITLLMMGIGTLLIGLLPSYA   89 (394)
T ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-----hhHHHHHHHHHHHHHHHHHHhhCCChh
Confidence            3444555543  44566666554322  222   23 68999999995     678888889888888888888776421


Q ss_pred             h----hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh--------cc
Q 011112          105 S----STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL--------TN  172 (493)
Q Consensus       105 ~----~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~--------~~  172 (493)
                      .    ....+++.|+++|++.+...+...+++.|..+   +++|++..+....+..+|.++++.+++.+.        +.
T Consensus        90 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~  166 (394)
T TIGR00883        90 TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP---PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLE  166 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhc
Confidence            1    11247788999999999888888999999874   589999999999999999999998877653        35


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhh
Q 011112          173 IEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKK  252 (493)
Q Consensus       173 ~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (493)
                      .+||+.|++.+++.++........||+++.++.+++     +                   ++        .+       
T Consensus       167 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------------~~--------~~-------  207 (394)
T TIGR00883       167 WGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-----H-------------------KK--------KR-------  207 (394)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-----c-------------------cc--------cc-------
Confidence            789999988775544433333445665433210000     0                   00        00       


Q ss_pred             hhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccc--hHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHH
Q 011112          253 RMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPE--ILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLG  330 (493)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g  330 (493)
                      .                      +.++       .+++++  ++......++............+.|.++++|+++.+.+
T Consensus       208 ~----------------------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  258 (394)
T TIGR00883       208 G----------------------PIRE-------TLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSAL  258 (394)
T ss_pred             C----------------------CHHH-------HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH
Confidence            0                      1111       122222  33333222222222222223345566666899998898


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhH
Q 011112          331 TARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMP  410 (493)
Q Consensus       331 l~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~  410 (493)
                      .......++.+++.++.+++.||+++|+.+.....+..+..+........      .++.+.......+..........+
T Consensus       259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~  332 (394)
T TIGR00883       259 LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD------SGSFTLFFFLVLGLALIGGMYTGP  332 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHHHHHhhh
Confidence            88778888889999999999999999998775554443322111111100      011111111122233333344455


Q ss_pred             HHHHHhhcCCCCchHHHHHHHHHH-HhhhhhhhHhHHHHhHHhhc
Q 011112          411 FLILSGQLCPPGIEGTLFALFMSI-SNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       411 ~~~~~~~~~p~~~~gt~~gl~~~~-~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ..+++.|..|++.|++++++.... ..+|..++|.++|.+.++.|
T Consensus       333 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       333 MGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            678899999999999999985444 45788899999999999876

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.90  E-value=2.2e-21  Score=199.55  Aligned_cols=380  Identities=10%  Similarity=0.031  Sum_probs=233.5

Q ss_pred             hhhhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHh-hhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchh
Q 011112            5 KNVFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKD-KLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIP   81 (493)
Q Consensus         5 ~~~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~-~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~   81 (493)
                      +|..-++.++ +...+|..+|.. ....++.+.+.+ ++|+|.+|.++..++..+.+.+ +.+.|+++||+     +.|+
T Consensus        28 ~~~~a~r~l~-~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-----G~R~  101 (462)
T PRK15034         28 GKHIARRNLW-ISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-----GGRR  101 (462)
T ss_pred             CchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChH
Confidence            3444455555 666777777765 455555555544 7999999999999999998887 68889999996     5566


Q ss_pred             HHHHHHHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHH
Q 011112           82 YLVISTVLSLVPWLILGLN-AFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGI  160 (493)
Q Consensus        82 ~ii~~~~l~~~~~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~  160 (493)
                      ++..+..+..+..+.+++. ++..++++.+++.|++.|++ +...++....+.+..   |+++||++.|+.....++|..
T Consensus       102 v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf---p~~~rG~A~Gi~~g~G~~G~~  177 (462)
T PRK15034        102 WTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFF---PKAKQGSALGINGGLGNLGVS  177 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC---CHhHhHHHHHHHHHHHhhHHH
Confidence            7778877777777777764 11123688899999999998 556677778888777   458999999999777777777


Q ss_pred             HHHHHHHHhh-----c-------------cccHHHHHHHHHHHHHHHHHHhhc-cccccccchhhhcccccCCCcccCCC
Q 011112          161 CGSLLGGYAL-----T-------------NIEIDRIFLLFTVLPAIQLLSCGL-VKENRVSTKVLKEFSSSNGYHQVNGN  221 (493)
Q Consensus       161 lg~~i~g~l~-----~-------------~~gw~~~f~~~~~~~~l~~i~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~  221 (493)
                      ++++++..+.     +             ..+||.++++..++.++..+..++ .++++. .+                 
T Consensus       178 l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~~-----------------  239 (462)
T PRK15034        178 VMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-SR-----------------  239 (462)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-cc-----------------
Confidence            6655554322     2             334788777766655555444433 333221 10                 


Q ss_pred             CcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHH
Q 011112          222 ESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFF  301 (493)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  301 (493)
                                                     .                      +.+    +..+.+|+|+.|...++.+
T Consensus       240 -------------------------------~----------------------~~~----~~~~vlk~~~~Wllslly~  262 (462)
T PRK15034        240 -------------------------------A----------------------SIA----DQLPVLQRLHLWLLSLLYL  262 (462)
T ss_pred             -------------------------------c----------------------CHH----HHHHHhCCCchhHHHHHHH
Confidence                                           0                      112    3445789999998777666


Q ss_pred             HHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheecc
Q 011112          302 LAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRM  381 (493)
Q Consensus       302 l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~  381 (493)
                      +.+..+.+....+++|.++.+  +............+...+..+++|++.||+|.++.+.++.+.+.+............
T Consensus       263 ~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~  340 (462)
T PRK15034        263 ATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT  340 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            655444444434455655433  333222223445566777788999999999999999888876666543222221100


Q ss_pred             ccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCC---------------------CchHHHHHHHHHHHhhhhh
Q 011112          382 NLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPP---------------------GIEGTLFALFMSISNFGST  440 (493)
Q Consensus       382 ~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~gt~~gl~~~~~~lg~~  440 (493)
                         ...+...+.. ......++.++.....+-++.++.|+                     ++.|...|+....+.+|+.
T Consensus       341 ---~~~~~~~~~~-~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf  416 (462)
T PRK15034        341 ---GSGNFIAFYA-VFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGF  416 (462)
T ss_pred             ---cccHHHHHHH-HHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccc
Confidence               0001011111 01111122222222334445555553                     2577888888888888888


Q ss_pred             hhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhh
Q 011112          441 VGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIA  479 (493)
Q Consensus       441 ~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  479 (493)
                      +-|.+-|...+..|    ++..-++.+..+.++|++-.+
T Consensus       417 ~~p~~~g~~~~~~g----~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        417 FIPQAFGMSLNMTG----SPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             hhhHHHHHHHHHcC----CcHHHHHHHHHHHHHHHHHHH
Confidence            88877667777644    344334444444444443333

>PRK11462 putative transporter; Provisional

Probab=99.90  E-value=8.8e-21  Score=198.40  Aligned_cols=349  Identities=15%  Similarity=0.095  Sum_probs=222.3

Q ss_pred             HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccch-
Q 011112           27 SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFR-  104 (493)
Q Consensus        27 ~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~-  104 (493)
                      .+....+..++.+..|+++..+|.+..+.-+--++ +|+.|.++||.+.|+.|||||++.+.+...++..++...|+.+ 
T Consensus        26 ~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~  105 (460)
T PRK11462         26 DNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSM  105 (460)
T ss_pred             HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCc
Confidence            36667778888999999999999988777666666 8999999999998877999999999888888877766555321 


Q ss_pred             -hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-------ccHH
Q 011112          105 -SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN-------IEID  176 (493)
Q Consensus       105 -~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~-------~gw~  176 (493)
                       .....+.+..++..++.....+++.++.+|+++  +++||.+..++...+.++|..+++.+...+.+.       .+|+
T Consensus       106 ~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~--d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~  183 (460)
T PRK11462        106 NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITN--DPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ  183 (460)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence             123334555556688999999999999999997  479999999999999999988887776655433       3577


Q ss_pred             HHHHHHHHHHHHHHHHhh-ccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhh
Q 011112          177 RIFLLFTVLPAIQLLSCG-LVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMF  255 (493)
Q Consensus       177 ~~f~~~~~~~~l~~i~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (493)
                      ....+.+++.++....++ ..||++++++                             +          +       .  
T Consensus       184 ~~~~i~~ii~~i~~~i~~~~~kE~~~~~~-----------------------------~----------~-------~--  215 (460)
T PRK11462        184 GGIAVLSVVAFMMLAFCFFTTKERVEAPP-----------------------------T----------T-------T--  215 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhcceeccCCCc-----------------------------c----------C-------C--
Confidence            766666655544443333 3444322110                             0          0       0  


Q ss_pred             hhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHH
Q 011112          256 KIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVV  335 (493)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~  335 (493)
                                          +.++   .+...++||.++..+...++.........+...+|.+..+|.+ ...+.....
T Consensus       216 --------------------~~~~---~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~  271 (460)
T PRK11462        216 --------------------SMRE---DLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTT  271 (460)
T ss_pred             --------------------CHHH---HHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHH
Confidence                                1222   2345567777655443333322222222223344444445543 334555566


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHH
Q 011112          336 GWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILS  415 (493)
Q Consensus       336 ~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  415 (493)
                      ..++.+++.++++++.||.++|+.+..+..+..+..+. ..+....      +...+.+ ..++.............+++
T Consensus       272 ~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~-~~~l~g~~~~~~~~l~~~m~  343 (460)
T PRK11462        272 YCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLA-MFFVPMQ------ASITMFV-FIFVIGVLHQLVTPIQWVMM  343 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH-HHHhchh------HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            77788889999999999999888876554443332222 1111100      1111111 11111111111111112334


Q ss_pred             hhcCC-------CCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCC
Q 011112          416 GQLCP-------PGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISS  457 (493)
Q Consensus       416 ~~~~p-------~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~  457 (493)
                      .+..+       .+.+|..++..++..++|.++++.++|.+.+..|+..
T Consensus       344 ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~~  392 (460)
T PRK11462        344 SDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDA  392 (460)
T ss_pred             HHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            44333       6778888999999999999999999999999878853

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.90  E-value=1.2e-21  Score=205.87  Aligned_cols=263  Identities=11%  Similarity=-0.014  Sum_probs=171.1

Q ss_pred             HHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhh
Q 011112           21 FTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGL   99 (493)
Q Consensus        21 f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~   99 (493)
                      +...+......+..+.+.+++|+|.++.++..+.+.+++.+ +++.|+++||+     +||+.+..+.++..++..++++
T Consensus        46 ~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----G~r~~~~~~~~~~~~~~~~~~~  120 (476)
T PLN00028         46 FTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-----GPRYGSAFLLMLTAPAVFCMSL  120 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHHH
Confidence            33444333334445566888999999999988888888877 68999999995     5667777888888887777776


Q ss_pred             cccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------
Q 011112          100 NAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT--------  171 (493)
Q Consensus       100 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~--------  171 (493)
                      .+    +.+.+++.|++.|++.+.. ++....+.|..   |+++||++.|+.....++|..+++.+.+.+..        
T Consensus       121 ~~----s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~---~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  192 (476)
T PLN00028        121 VS----SATGFIAVRFFIGFSLATF-VSCQYWMSTMF---NGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP  192 (476)
T ss_pred             hc----CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhc---ChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            64    4567778899999887754 34556677777   45899999999988777787777666654422        


Q ss_pred             -cccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhh
Q 011112          172 -NIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQ  250 (493)
Q Consensus       172 -~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (493)
                       ..|||+.|++.+++.++..+..++.++++++...+       +.+   +       +.    +       . ++     
T Consensus       193 ~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~-------~~~---~-------~~----~-------~-~~-----  238 (476)
T PLN00028        193 SFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR-------ELK---K-------SG----T-------M-PK-----  238 (476)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh-------hHH---h-------cC----c-------c-cc-----
Confidence             25899999998887776665554444332211000       000   0       00    0       0 00     


Q ss_pred             hhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHH
Q 011112          251 KKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLG  330 (493)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g  330 (493)
                        .                      +..   +.+++.+++++.|...+..++............+.|+.+..|++..+.+
T Consensus       239 --~----------------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~  291 (476)
T PLN00028        239 --D----------------------SFS---KVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAG  291 (476)
T ss_pred             --c----------------------cHH---HHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHH
Confidence              0                      111   1244556777766544332221211111222234555566899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCChh
Q 011112          331 TARVVGWVGLMLGTYTYNGYLKRLKLR  357 (493)
Q Consensus       331 l~~~~~~~~~~l~~~~~~~~~~~~~~r  357 (493)
                      .+.....++.+++.++.|++.||+++|
T Consensus       292 ~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        292 AIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            887778888888888888988887654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.90  E-value=9.3e-21  Score=193.57  Aligned_cols=382  Identities=19%  Similarity=0.236  Sum_probs=236.0

Q ss_pred             HHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHH
Q 011112           17 CLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPW   94 (493)
Q Consensus        17 ~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~   94 (493)
                      ...||++-+. +...+..+.|+++ .|.|.+|+|.+.+...+...+ .|+||.++||.    .++|+.+.+..++..+..
T Consensus         8 s~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~----~~~~~~l~~~~l~~~~~~   82 (400)
T PF03825_consen    8 SLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRF----GSAKRILALLSLLSALAL   82 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhHHHHHHHHHHHHHHHH
Confidence            3445554443 3444556778876 799999999999888887777 57999999995    356777777666666655


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH-HHHhhccc
Q 011112           95 LILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL-GGYALTNI  173 (493)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i-~g~l~~~~  173 (493)
                      +.....+    +++.+++..++..+......+..|++..+..++ +.++.|+    ...++++|.+++... ++.+....
T Consensus        83 ~~~~~~~----~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~-~~~~YG~----iRlwGSiGf~~~~~~~~~~~~~~~  153 (400)
T PF03825_consen   83 LLLAFSS----SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD-RGKDYGR----IRLWGSIGFIVAALAFGGLLGGYL  153 (400)
T ss_pred             HHHHHhc----cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc-ccCCCCc----chhhhhHHHHHHHHHHHHHHHhhh
Confidence            5444433    455566666666777777778889998887753 3344444    444556666655433 23333222


Q ss_pred             ---cHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhh
Q 011112          174 ---EIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQ  250 (493)
Q Consensus       174 ---gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (493)
                         +....+++.+...++.....+.+|+++++++.+         +           +             .  +     
T Consensus       154 ~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~---------~-----------~-------------~--~-----  193 (400)
T PF03825_consen  154 GISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAK---------E-----------S-------------V--K-----  193 (400)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHhCCCCccccccC---------C-----------C-------------c--c-----
Confidence               233456666655544444556677665322100         0           0             0  0     


Q ss_pred             hhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHH
Q 011112          251 KKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLG  330 (493)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g  330 (493)
                                                 ++..++.++++|||++...++..++........+...+.|+++.-|.+.+..|
T Consensus       194 ---------------------------~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g  246 (400)
T PF03825_consen  194 ---------------------------KLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIG  246 (400)
T ss_pred             ---------------------------cccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHH
Confidence                                       00011345678999987766665554433332233334455553337878888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeee---hhHHHHHHHHhh
Q 011112          331 TARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLY---GSALVDAVNQFK  407 (493)
Q Consensus       331 l~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~---~~~~~~~~~~~~  407 (493)
                      ....++.++++..-...+|+.+|++.++++.++.+...+=..+.....        .|....+..   ...+++.+.+..
T Consensus       247 ~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~--------~~~~~~~~~~~l~q~lhG~tf~~~  318 (400)
T PF03825_consen  247 ILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS--------DPWPFIVALQLLGQLLHGLTFGLF  318 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc--------CCcHHHHHHHHHHHhhhhHHHHHH
Confidence            877788899999999999999999999999998877655321111110        011111111   112355555666


Q ss_pred             HhHHHHHHhhcCCCCchHHHHHHHHHHH-hhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhh-hhhhhccc
Q 011112          408 FMPFLILSGQLCPPGIEGTLFALFMSIS-NFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIP-IAFLFLIP  485 (493)
Q Consensus       408 ~~~~~~~~~~~~p~~~~gt~~gl~~~~~-~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~  485 (493)
                      +.....++.+.+|++.|++++++++.+. .+|..+|+.++|.+.|.+|... -++ +...+.+.+.+.++. ++++.+-+
T Consensus       319 ~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~-~~~-~~~~~~v~a~~~~~~~~~f~~~fk  396 (400)
T PF03825_consen  319 HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG-MFD-WSAVFLVFAVMALVILVLFVILFK  396 (400)
T ss_pred             HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh-hhh-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            6667789999999999999999999865 5899999999999999988642 122 223333444433333 34444555


Q ss_pred             CCCC
Q 011112          486 KGAT  489 (493)
Q Consensus       486 ~~~~  489 (493)
                      |++|
T Consensus       397 ~~~~  400 (400)
T PF03825_consen  397 PKHN  400 (400)
T ss_pred             CCCC
Confidence            5544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.89  E-value=4.1e-21  Score=222.86  Aligned_cols=363  Identities=13%  Similarity=0.054  Sum_probs=232.3

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHh--hHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPS--ASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~--~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      ++.+....+.+..++..+.. .....+.+++.++++.+.+  ..++..+++.+++.+ +|++|+++||+     +||+.+
T Consensus         6 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-----grk~~l   80 (1146)
T PRK08633          6 LKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-----SKNRVI   80 (1146)
T ss_pred             hhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-----cHHHHH
Confidence            33334443444555555432 4444445555556666543  468888888888877 89999999995     677787


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGS  163 (493)
Q Consensus        84 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~  163 (493)
                      +.+.++.++..+++.+... ..+++.+++.|+++|++.+...++..+++.|.++   +++|++++|+...+.++|.++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~r~~~~~~~~~~~~ig~~lg~  156 (1146)
T PRK08633         81 RIVKLFEVGLTLLIVLAYY-LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVG---KENLSRANGLLEAFTIVAILAGT  156 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcC---cccchhhhhHHHHHHHHHHHHHH
Confidence            7776655554443332211 1247788999999999999999999999999984   48999999999999999999999


Q ss_pred             HHHHHhhcc---------ccHHHHHHHHHHHHHHHH-HHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccc
Q 011112          164 LLGGYALTN---------IEIDRIFLLFTVLPAIQL-LSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSE  233 (493)
Q Consensus       164 ~i~g~l~~~---------~gw~~~f~~~~~~~~l~~-i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (493)
                      ++++++.+.         .+|++.+.+..+...+.. +..+.+||.++....+.      ++            .     
T Consensus       157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~------------~-----  213 (1146)
T PRK08633        157 ALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF------DK------------K-----  213 (1146)
T ss_pred             HHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc------cc------------c-----
Confidence            999999875         234444444333332222 33345666543321000      00            0     


Q ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcc
Q 011112          234 EKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTV  313 (493)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~  313 (493)
                      +         .+                              ..++....+..++++|.++..++..++.+.........
T Consensus       214 ~---------~~------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (1146)
T PRK08633        214 K---------YL------------------------------FPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQAN  254 (1146)
T ss_pred             c---------cc------------------------------cHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            0         00                              01111123344567777665443333222222222233


Q ss_pred             eeeeeeccCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceE
Q 011112          314 MFYYQTEILNLEAS-FLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTM  392 (493)
Q Consensus       314 ~~~~~~~~~g~s~~-~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~  392 (493)
                      ++.|..+.+|++.. ..|++.....++.++++++.+++.||.++++.+.++.++..++.+. +...         .+.+.
T Consensus       255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~  324 (1146)
T PRK08633        255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFL-LPTA---------PSLAS  324 (1146)
T ss_pred             hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHH-HHHh---------hhHHH
Confidence            45566667899988 8899888888999999999999999999888877776666554322 1111         11111


Q ss_pred             eeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHH
Q 011112          393 VLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~  451 (493)
                      .+...++..+..+....+..+++.+..|++.+|+++|+.+++.++|..+++.+++.+..
T Consensus       325 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        325 VLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122233333344455667888999999999999999999999999888888776654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.89  E-value=4.1e-20  Score=190.58  Aligned_cols=351  Identities=13%  Similarity=0.091  Sum_probs=228.7

Q ss_pred             HHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHH
Q 011112           13 LWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSL   91 (493)
Q Consensus        13 ~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~   91 (493)
                      ++.++..+|..|+..-...++.|.+++++|.|+.+.|+..+.+.+++.+ +++.|++.||+     +||+.++.+..+.+
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-----G~r~~~~~g~~l~~   79 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-----SYKAGILLGLFLYA   79 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHH
Confidence            3446777888888753334445666889999999999999999999887 78999999995     67888899998888


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011112           92 VPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT  171 (493)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~  171 (493)
                      ++.+++..... .++++.+++.|++.|+|.+..++..+.++.+..+   +++|++..++.+...++|..+|+.+++.+..
T Consensus        80 ~g~~l~~~~~~-~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~  155 (410)
T TIGR00885        80 LGAFLFWPAAE-IMNYTLFLVGLFILTAGLGFLETAANPYILVMGP---ESTATRRLNLAQSFNPFGSIIGMVVAQQLIL  155 (410)
T ss_pred             HHHHHHHHHHh-hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCC---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88776543321 1357788899999999999999999999988874   4778999999999999999999999987742


Q ss_pred             --------------------------cccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCccc
Q 011112          172 --------------------------NIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESIL  225 (493)
Q Consensus       172 --------------------------~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (493)
                                                ..+||++|++.+++.++..+...+.++++.+++   +     +           
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~---~-----~-----------  216 (410)
T TIGR00885       156 SNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHS---D-----A-----------  216 (410)
T ss_pred             cCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc---c-----c-----------
Confidence                                      246999999888765555443333332211110   0     0           


Q ss_pred             CCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHh
Q 011112          226 DDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHV  305 (493)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~  305 (493)
                        ++    +                                         +.++   +..+.+|+|+++...+..|+...
T Consensus       217 --~~----~-----------------------------------------~~~~---~~~~~~~~~~~~~~~l~~f~yvg  246 (410)
T TIGR00885       217 --KQ----I-----------------------------------------SFSA---SLSRLARIRHYREGVIAQFFYVG  246 (410)
T ss_pred             --cc----c-----------------------------------------cchh---hHHHHHhChhHHHHHHHHHHHHH
Confidence              00    0                                         0000   11233566666554444444222


Q ss_pred             cccCCCcceeeeeec-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccc
Q 011112          306 AVPNLSTVMFYYQTE-ILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLT  384 (493)
Q Consensus       306 ~~~~~~~~~~~~~~~-~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~  384 (493)
                      ......+..+.|..+ ..+.+....+...........+|.++++++.||.++|+.+.+..++..+..++.. ..      
T Consensus       247 ~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~-~~------  319 (410)
T TIGR00885       247 VQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSI-FA------  319 (410)
T ss_pred             HHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-Hc------
Confidence            221222223344433 2344554445444445567788999999999999999988877776665433221 11      


Q ss_pred             cCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          385 VGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       385 ~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                         +..... ....+...+....+...++...+..+++.+....++..++  +|+.+.|.+.|.+.|..|
T Consensus       320 ---~~~~~~-~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~  383 (410)
T TIGR00885       320 ---GGHVGL-YCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKE  383 (410)
T ss_pred             ---CChHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhc
Confidence               111101 1111222222233433467788888887765566665544  899999999999999654

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00896 CynX cyanate transporter

Probab=99.88  E-value=3.9e-21  Score=194.35  Aligned_cols=325  Identities=14%  Similarity=0.100  Sum_probs=209.9

Q ss_pred             HHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 011112           31 TAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWH  109 (493)
Q Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~  109 (493)
                      .++.|.+++++|+|.++.|+..+++.+++.+ +++.|+++||+     +||+.++.+.+...++...+ ..+    +.+.
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~-~~~----~~~~   89 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-----GEERSVAAGLLLIAAGILIR-SAP----GTAL   89 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----CchHHHHHHHHHHHHHHHHH-Hhc----cHHH
Confidence            3445566888999999999999999999887 79999999995     56777778877776666655 333    4567


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHH
Q 011112          110 LIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI--EIDRIFLLFTVLPA  187 (493)
Q Consensus       110 l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~--gw~~~f~~~~~~~~  187 (493)
                      +++.|++.+++.+...+...+++.|..    +++|+++.+......++|..+++.+++.+.++.  +||+.|...++..+
T Consensus        90 l~~~~~~~g~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        90 LFAGTALIGVGIAIINVLLPSLIKRDF----PQRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHhC----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            788999999998887777777776655    268999999999999999999999999988764  39999887664433


Q ss_pred             HHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCC
Q 011112          188 IQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNN  267 (493)
Q Consensus       188 l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (493)
                      +..  ..++||.+++++.        + +     +     +.               +       .              
T Consensus       166 ~~~--~~~~~~~~~~~~~--------~-~-----~-----~~---------------~-------~--------------  188 (355)
T TIGR00896       166 LAL--LAWIPQVRRRVAA--------N-Q-----T-----TT---------------R-------L--------------  188 (355)
T ss_pred             HHH--HHHhhhhccccCC--------C-C-----C-----CC---------------C-------C--------------
Confidence            222  2234544322100        0 0     0     00               0       0              


Q ss_pred             chhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011112          268 PLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTY  347 (493)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~  347 (493)
                              .       .++.+|+|..+...+..++............+.|.++ .|+|..+.+.......++.+++.++.
T Consensus       189 --------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~  252 (355)
T TIGR00896       189 --------T-------PVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLI  252 (355)
T ss_pred             --------C-------CchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhH
Confidence                    0       1122345555443332222122211122223455554 69999999998888889999999999


Q ss_pred             HHHHhcCC-hhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHH-HHHHhhcC-CCCch
Q 011112          348 NGYLKRLK-LRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPF-LILSGQLC-PPGIE  424 (493)
Q Consensus       348 ~~~~~~~~-~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-p~~~~  424 (493)
                      +++.||.+ +|+.+..+.++..++.+. +....        .... +. ...+.....+ ...|. .+.+.+.. +++.+
T Consensus       253 g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~-~~-~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~  320 (355)
T TIGR00896       253 PALARRVKDQRGIVAVLAVLQLVGLCG-LLFAP--------MHGL-WA-WALVLGLGQG-GAFPLALTLIGLRSRQAAQA  320 (355)
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHH-HHHhh--------hhHH-HH-HHHHHHHhhh-hHhHHHHHHHHHhccCHHHH
Confidence            99999995 455555555554443221 11111        0111 11 1112222222 22232 34444444 45677


Q ss_pred             HHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          425 GTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       425 gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ++.+++.+++.+++..++|.+.|.+.|+.|
T Consensus       321 g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       321 AALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.88  E-value=3.6e-20  Score=194.53  Aligned_cols=171  Identities=13%  Similarity=0.112  Sum_probs=138.0

Q ss_pred             hhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhh--hCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112           10 VSFLWLICLIYFTQGFR-SFVWTAVSYQLKDK--LKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus        10 ~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~--~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++.++.+....+...+. +.....++.|++++  +|.|..+.|...+.+.+...+ .+++|+++||+    .+||+.++.
T Consensus         9 p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~----~G~~~~l~~   84 (475)
T TIGR00924         9 PKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRV----WGTKKTMVL   84 (475)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhh----cchHHHHHH
Confidence            34455555666776665 35566677888877  999999999999998877766 67899999982    368888899


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +.++.+++.+++++.+    +.+.+.+.|.+.++|.+...+...+++.|..+++++++|+++.++++.+.++|..+|+.+
T Consensus        85 ~~~~~~~g~~~~~~~~----~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l  160 (475)
T TIGR00924        85 GGIVLMLGHFMLAMSI----YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLL  160 (475)
T ss_pred             HHHHHHHHHHHHHhcc----cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHH
Confidence            9999888888777754    345667788889999988888899999999875433568999999999999999999999


Q ss_pred             HHHhhccccHHHHHHHHHHHHHH
Q 011112          166 GGYALTNIEIDRIFLLFTVLPAI  188 (493)
Q Consensus       166 ~g~l~~~~gw~~~f~~~~~~~~l  188 (493)
                      ++++.++.|||+.|++.++..++
T Consensus       161 ~g~l~~~~g~~~~f~~~~~~~~~  183 (475)
T TIGR00924       161 AGVIAENYGYHVGFNLAAVGMVI  183 (475)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHH
Confidence            99999999999999987754333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.88  E-value=3.2e-20  Score=195.22  Aligned_cols=168  Identities=10%  Similarity=0.161  Sum_probs=136.4

Q ss_pred             chhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHH-hhHhhhhhhhhcccccccCCCCchhHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAF-FPWSIKPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~-l~~~~~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +++-++.++...+...+.. .....+..|+++++|.+.++.++..+.+. +.+...++.|+++||+    .+||+.++.+
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~----~G~r~~~~~g   87 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHL----LGTKRTIVLG   87 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhc----cchHHHHHHH
Confidence            5666666666667777764 56667778889999999999999888776 4555578999999983    3788899999


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      .+++.++.+.+++.++   ....+++.|.++++|.+...+...+++.|..+++ .++|++++++++...++|..+||.++
T Consensus        88 ~~~~~~g~~~~~~~~~---~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~-~~~~~~~~~~~~~~~nig~~~g~~l~  163 (489)
T PRK10207         88 AIVLAIGYFMTGMSLL---KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPK-DPRLDGAFTLFYMSINIGSLISLSLA  163 (489)
T ss_pred             HHHHHHHHHHHHHhcc---chhHHHHHHHHHHhccccccCCHHHHHHHhcCCC-chhhhcchhHHHHHHHHHHHHHHHHH
Confidence            9999999888887642   1223457889999999988888899999999652 24678899999999999999999999


Q ss_pred             HHhhccccHHHHHHHHHH
Q 011112          167 GYALTNIEIDRIFLLFTV  184 (493)
Q Consensus       167 g~l~~~~gw~~~f~~~~~  184 (493)
                      +++.++.|||+.|++.++
T Consensus       164 g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        164 PVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             HHHHHhhChHHHHHHHHH
Confidence            999999999999998654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.87  E-value=1.9e-19  Score=187.42  Aligned_cols=363  Identities=17%  Similarity=0.235  Sum_probs=242.1

Q ss_pred             HHHHHHHHhhHh-hhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHH
Q 011112           49 QFVSAVAFFPWS-IKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVV  127 (493)
Q Consensus        49 g~~~s~~~l~~~-~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~  127 (493)
                      +...++..+.-+ +.|+.|.++|+    +.+||+++.....++.++...+.+.+.  ..++...++.++..++.....+.
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~----~~~Rk~~l~~~~~~~~~~~~~l~~v~~--~~~~~~~~l~iia~v~~~~~~vf  146 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADY----GGRRKRFLLIFTLLGVLATALLWFVSP--GQWWLALVLFIIANVGYEASNVF  146 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc----cccchHHHHHHHHHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHHHHHHHH
Confidence            444455544444 48999999997    357888888888888877777777632  34556667777888999999999


Q ss_pred             HHHHHHHHhhhhch-----------------------hcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------cccHH
Q 011112          128 VDAMIAEAAKSERA-----------------------AFAGDLQSLSWLAMAFGGICGSLLGGYALT--------NIEID  176 (493)
Q Consensus       128 ~~ali~~~~~~~~~-----------------------~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~--------~~gw~  176 (493)
                      ++++..|+.+++|.                       .+|++..+..+...++|+++..++.-.+..        ..+.|
T Consensus       147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            99999999975322                       013899999999999999987777655432        12358


Q ss_pred             HHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhh
Q 011112          177 RIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMF  255 (493)
Q Consensus       177 ~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (493)
                      ..+.+.++.-++..+.. +++||.+++...+                     ..    ++                    
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~---------------------~~----~~--------------------  261 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLP---------------------SG----SS--------------------  261 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC---------------------cc----hh--------------------
Confidence            88888887777666654 4577766532100                     00    00                    


Q ss_pred             hhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHH
Q 011112          256 KIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVV  335 (493)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~  335 (493)
                                      ....++|+..+.+++.-|.|.+...++..++..-...........|..+++|+|..+...+.++
T Consensus       262 ----------------~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~  325 (477)
T PF11700_consen  262 ----------------YLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLV  325 (477)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHH
Confidence                            0111344444455555566777666555454343444344444567777899999999888888


Q ss_pred             HHHHHHHHHHHHHHHHhcCChh--HHHHHHHHHHHHHhhhhhhheeccccccCccCce-EeeehhHHHHHHHHhhHhHHH
Q 011112          336 GWVGLMLGTYTYNGYLKRLKLR--RILLLTQVGLSILSFLDIVLVSRMNLTVGISDKT-MVLYGSALVDAVNQFKFMPFL  412 (493)
Q Consensus       336 ~~~~~~l~~~~~~~~~~~~~~r--~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~l~~~~~~~~~~~~~~~~~~  412 (493)
                      ..+.+++|+++++++.||+|.|  +++..+.++..+..+..+.-..  ....|....+ +++.. .+.....+......-
T Consensus       326 ~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~--~~~~g~~~~~~f~~~a-~~~G~~~G~~qs~sR  402 (477)
T PF11700_consen  326 VQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFW--PSFFGLKSPWEFWVLA-VLIGLFMGGIQSASR  402 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhh--hcccCcccHHHHHHHH-HHHHHHhhhHHHHHH
Confidence            9999999999999999999999  8887777666443322221000  1111222222 33221 222222222222234


Q ss_pred             HHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhcccCCC
Q 011112          413 ILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKGA  488 (493)
Q Consensus       413 ~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  488 (493)
                      ++.+++.|+++++..+|++...++.+..+||.+.|.+.+..|-       .+..+....+..+++++++..++.++
T Consensus       403 s~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~-------~r~g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  403 SLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS-------QRYGFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------chhHHHHHHHHHHHHHHHHhhccchh
Confidence            6799999999999999999999999999999999999998752       23455566666777877777777544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.87  E-value=6.9e-21  Score=187.83  Aligned_cols=363  Identities=15%  Similarity=0.139  Sum_probs=248.2

Q ss_pred             hhhhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHh-hhhhhhhcccccccCCCCchhH
Q 011112            5 KNVFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS-IKPLYGILSDCIPIKGRKRIPY   82 (493)
Q Consensus         5 ~~~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~-~~~~~G~lsDr~~~~g~~rr~~   82 (493)
                      .|.-+++.++ +...+|.-+|.. ....++.+.+++++|+|+.|.+++.++-.+.-+ ++.+.|.+.||+    .+| ++
T Consensus         8 ~k~~~~~~L~-~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf----GgR-~~   81 (417)
T COG2223           8 GKRIARRNLW-LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF----GGR-KW   81 (417)
T ss_pred             cccchhHHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc----Cch-HH
Confidence            3455677777 778888888876 667788888899999999999998888776544 489999999996    244 45


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHH
Q 011112           83 LVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICG  162 (493)
Q Consensus        83 ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg  162 (493)
                      .+.+.++..+-++..+++.+.+ +++.+++++.+.|++.+... ....++++..   |+++.|.++|+.. +.|+|..+.
T Consensus        82 ~~~s~~l~~IP~~~~~~a~~~~-~~~~ll~~gll~G~~GasFa-v~m~~~s~~f---P~~~qG~AlGI~g-~GN~G~av~  155 (417)
T COG2223          82 TILSMLLLLIPCLGLAFAVTYP-STWQLLVIGLLLGLAGASFA-VGMPNASFFF---PKEKQGLALGIAG-AGNLGVAVA  155 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHccCC-chHHHHHHHHHHhcccceeh-cccccccccC---ChhhhhHHHHHhc-cccccHHHH
Confidence            5677777777777777765443 44788899989898776554 4556666666   6799999999999 999999999


Q ss_pred             HHHHHHhhcccc---HHHHHHHHHHHHHHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhh
Q 011112          163 SLLGGYALTNIE---IDRIFLLFTVLPAIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNI  238 (493)
Q Consensus       163 ~~i~g~l~~~~g---w~~~f~~~~~~~~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (493)
                      ..++-.+....+   ||.+..+..+..++..+. ++.+++.+....++                           +    
T Consensus       156 q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~---------------------------~----  204 (417)
T COG2223         156 QLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV---------------------------K----  204 (417)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc---------------------------c----
Confidence            999998888888   998888777665555543 44555544321100                           0    


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeee
Q 011112          239 STKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQ  318 (493)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  318 (493)
                                                           +.+.  .+++.++++|+.|...++.+..+..+.+.....+.|+
T Consensus       205 -------------------------------------~~~~--~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~  245 (417)
T COG2223         205 -------------------------------------PQLP--AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYL  245 (417)
T ss_pred             -------------------------------------ccch--hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                 0000  1234456788888887766655555555555567788


Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceE-eeehh
Q 011112          319 TEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTM-VLYGS  397 (493)
Q Consensus       319 ~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~-~l~~~  397 (493)
                      ++++|.++.+.|...........+.-+.+|+++||+|.+|........+.+...+.......    .+...... .....
T Consensus       246 ~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~  321 (417)
T COG2223         246 VTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTG----FGHGGSFVVFVAVF  321 (417)
T ss_pred             HHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccc----cccCcchHHHHHHH
Confidence            88899999999988666666666778899999999999999888888777764332211110    01111110 11111


Q ss_pred             HHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          398 ALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      .....+.+..--..+.++..+.|+ +.|...|+...++++|+..-|..-+...+..|
T Consensus       322 l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg  377 (417)
T COG2223         322 LALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG  377 (417)
T ss_pred             HHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc
Confidence            111112222222233344555554 77889999999999998887888787877755

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.87  E-value=1.1e-18  Score=172.86  Aligned_cols=373  Identities=17%  Similarity=0.173  Sum_probs=249.3

Q ss_pred             HhhhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccc-cCCCCchhHHHHHHHHHHHHHHHHhhc----cc------chhh
Q 011112           38 KDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIP-IKGRKRIPYLVISTVLSLVPWLILGLN----AF------FRSS  106 (493)
Q Consensus        38 ~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~-~~g~~rr~~ii~~~~l~~~~~~~~~~~----~~------~~~~  106 (493)
                      ..|++++..-.+...++..+..-.+|.+|..||+.| .+|+||.||+..|..+.+.+..+..+.    .+      .+..
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~   86 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFW   86 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccH
Confidence            456999999888888777766667889999999999 889999999999998877755444322    11      0112


Q ss_pred             HH--HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Q 011112          107 TW--HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTV  184 (493)
Q Consensus       107 ~~--~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~  184 (493)
                      .+  ...+.+.+.|+|.....++..+++.|.++   +++|+++.++.+.+..+|.+++.++.|.+.+.++......+.-.
T Consensus        87 ~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~---e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~  163 (403)
T PF03209_consen   87 LGLALAALAFLLYGLGVHASGTSFLALLADLAP---EERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG  163 (403)
T ss_pred             HHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC---HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence            22  23345556788888888999999999984   59999999999999999999999999999887764333222222


Q ss_pred             HHHHH---HHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhcc
Q 011112          185 LPAIQ---LLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQ  261 (493)
Q Consensus       185 ~~~l~---~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (493)
                      ..++.   .+...+-.|++++...+.                  .++     |          +       .        
T Consensus       164 ~a~i~~~l~~ia~wg~E~r~~~~~~~------------------~~~-----~----------~-------~--------  195 (403)
T PF03209_consen  164 VALIALLLNLIALWGQEPRRSRRAAA------------------AER-----P----------R-------P--------  195 (403)
T ss_pred             HHHHHHHHHHHHHHhcccCCcccccC------------------CCC-----C----------C-------c--------
Confidence            22222   223334445544331000                  000     0          0       1        


Q ss_pred             CCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHH
Q 011112          262 IPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLM  341 (493)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~  341 (493)
                                    ++++.++++   .++|+..+...+.++....+..-...+-+|--+.+|+|..+...++.....+.+
T Consensus       196 --------------~f~~a~~~~---~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L  258 (403)
T PF03209_consen  196 --------------PFREAWRQV---WASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTL  258 (403)
T ss_pred             --------------cHHHHHHHH---HhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHH
Confidence                          344444444   367877777777666555554444445677778899999999999898999999


Q ss_pred             HHHHHHHHHHh-cCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCC
Q 011112          342 LGTYTYNGYLK-RLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCP  420 (493)
Q Consensus       342 l~~~~~~~~~~-~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p  420 (493)
                      +|....+++.. |.+++++-..+.....++.. .+.+...      ..+.+..-....+..+.++.......+.++++.+
T Consensus       259 ~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~-lii~a~~------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~  331 (403)
T PF03209_consen  259 LGMLLAGFLLSRRLGKKRTAALGCLLGALAFA-LIILAGP------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTS  331 (403)
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-HHHHHHh------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence            99988888876 56777766666555555432 2222111      1122222122233444445555556678899999


Q ss_pred             CCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC-CC-CCccchHHHHHHHHhhhhhhhhhhhccc
Q 011112          421 PGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI-SS-GSFDNLLLGISIQALCTFIPIAFLFLIP  485 (493)
Q Consensus       421 ~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~  485 (493)
                      ++..|+.+|++...+.++..++...||.+.|.... .. .....|...|.+-++..+++++.+.-+.
T Consensus       332 ~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~l~  398 (403)
T PF03209_consen  332 AGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGRLD  398 (403)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999985322 11 2334566667777777777766664333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=5.4e-22  Score=192.96  Aligned_cols=328  Identities=16%  Similarity=0.174  Sum_probs=228.4

Q ss_pred             hhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHH
Q 011112           40 KLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQN  118 (493)
Q Consensus        40 ~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~  118 (493)
                      +.+-+.+++|++.+...+...+ +|+.|++.||+     ++|--++.|..+...+..++++.+    +++.+++.|.+||
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-----Gy~ipm~~Gl~vmf~sTilFafg~----sy~~l~vAR~LQg  170 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-----GYKIPMVAGLFVMFLSTILFAFGN----SYPMLFVARSLQG  170 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-----ccccHHHHHHHHHHHHHHHHHHcc----hhHHHHHHHHHhh
Confidence            4566778899999888776654 99999999996     567777889888888888888875    7889999999999


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhcccc
Q 011112          119 LGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKE  198 (493)
Q Consensus       119 ~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e  198 (493)
                      +|.+..+++..++++|.+++  .++|++++|....+.++|.++||++||.+++..|.+.+|.+.+.+.++-..+-+++=|
T Consensus       171 vgsA~~~tsglamlAd~f~~--d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  171 VGSAFADTSGLAMLADVFPE--DNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             hhHHHHHhhhHHHHHHHccc--chhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence            99999999999999999986  3889999999999999999999999999999999999999999887776666555433


Q ss_pred             c-cccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhH
Q 011112          199 N-RVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSL  277 (493)
Q Consensus       199 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (493)
                      + +.++..        +                   +          +       +                        
T Consensus       249 p~~~~~~~--------~-------------------~----------~-------~------------------------  260 (464)
T KOG3764|consen  249 PTEMDPDS--------T-------------------E----------Q-------G------------------------  260 (464)
T ss_pred             ccccCccc--------c-------------------c----------c-------C------------------------
Confidence            3 222100        0                   0          0       0                        


Q ss_pred             HHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChh
Q 011112          278 KAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLR  357 (493)
Q Consensus       278 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r  357 (493)
                          .++|+++++|.++....-.-..+.......+..+.|+.+.+.-+.-+.|+..+...+...+++.+.+.+.+|++..
T Consensus       261 ----~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~  336 (464)
T KOG3764|consen  261 ----TPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHL  336 (464)
T ss_pred             ----ccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCch
Confidence                0355677788776543221111333333444456677676663444789988888899999999999999999955


Q ss_pred             HHHHHHHHHHHHHhhhhhh-heeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCC---chHHHHHHHHH
Q 011112          358 RILLLTQVGLSILSFLDIV-LVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPG---IEGTLFALFMS  433 (493)
Q Consensus       358 ~~l~~~~~~~~~~~l~~~~-~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~gt~~gl~~~  433 (493)
                      +.+.....+...+.....+ +.+.+      ...+.-.....+.......+++|.+.+.-+.....   .-|..+++...
T Consensus       337 ~wl~~~~gl~~~G~~~~~iP~~~~~------~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~  410 (464)
T KOG3764|consen  337 RWLLSLGGLATVGVSSGPIPFATSI------AQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADA  410 (464)
T ss_pred             hHHHHHHHHHHHHHHhchhHhhhhH------HHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHH
Confidence            5444333222222111111 11100      11111111112222222345677765544443333   56788899998


Q ss_pred             HHhhhhhhhHhHHHHhHHhhcCC
Q 011112          434 ISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       434 ~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                      ...+|..+||.++|.+.+.+|+.
T Consensus       411 a~sla~a~GP~~gg~iv~~iGF~  433 (464)
T KOG3764|consen  411 AFSLAYAIGPTFGGSLVEAIGFE  433 (464)
T ss_pred             HHHHhhhccccccchheeehhHH
Confidence            89999999999999999988764

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.86  E-value=1.5e-22  Score=200.98  Aligned_cols=176  Identities=17%  Similarity=0.239  Sum_probs=150.6

Q ss_pred             HHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHH
Q 011112           15 LICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLV   92 (493)
Q Consensus        15 ~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~   92 (493)
                      +++....++..+ +.+-. ..+-+++.+|.+++..|.+.+.+.+.+.+ +|++|.++||     +.||.++.+|..++.+
T Consensus        37 il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-----yNR~~v~~vG~~iW~~  110 (493)
T KOG1330|consen   37 ILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-----YNRKRVIAVGIFIWTL  110 (493)
T ss_pred             HHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-----cCcceEEeeHHHHHHH
Confidence            344555666665 33322 34566889999999999999999998877 8999999999     4899999999999999


Q ss_pred             HHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011112           93 PWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN  172 (493)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~  172 (493)
                      +.+.+++..    .+|++.++|.+.|+|.+...+..+.+++|.++   ..+|++++++++.+..+|..+|.++|..+.++
T Consensus       111 Av~~~~fs~----~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~---~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  111 AVFASGFSN----HFWQVLLCRGFVGIGEASYSPIAPSLIADSFP---DDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHhccchhhhcccchhHhhhcCc---chhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence            999988873    78999999999999999999999999999995   48999999999999999999999999999987


Q ss_pred             cc-HHHHHHHHHHHHHHHHHHh-hccccccccc
Q 011112          173 IE-IDRIFLLFTVLPAIQLLSC-GLVKENRVST  203 (493)
Q Consensus       173 ~g-w~~~f~~~~~~~~l~~i~~-~~~~e~~~~~  203 (493)
                      .+ |||.|+..++++++..++. ++++|+++..
T Consensus       184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga  216 (493)
T KOG1330|consen  184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA  216 (493)
T ss_pred             ccceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence            66 9999999999998887655 5677776543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.6e-19  Score=183.65  Aligned_cols=393  Identities=17%  Similarity=0.157  Sum_probs=248.1

Q ss_pred             HHhhhC--CCHhhHHH----HHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 011112           37 LKDKLK--FSPSASQF----VSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWH  109 (493)
Q Consensus        37 l~~~~g--~s~~~~g~----~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~  109 (493)
                      +.+++|  .++++...    ..+++.++-.+ +.+.|+++||+     +||.-+..+.++..++.+++.++. ..++++.
T Consensus        45 ~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~-----GRK~~l~~~~~l~~~~~~~~~~s~-~~~~~e~  118 (485)
T KOG0569|consen   45 LIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF-----GRKNALLLSNLLAVLAALLMGLSK-SAPSFEM  118 (485)
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cchHHHHHHHHHHHHHHHHHHHHH-HhhhHHH
Confidence            345567  55555444    44556667667 57899999994     677777777777777766665542 2347889


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHH-Hh-hccccHHHHHHHHHHHHH
Q 011112          110 LIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGG-YA-LTNIEIDRIFLLFTVLPA  187 (493)
Q Consensus       110 l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g-~l-~~~~gw~~~f~~~~~~~~  187 (493)
                      +++.|++.|+..+.......-++.|..   |.+.||........+..+|.++|..++. .+ -+...|++.+....++.+
T Consensus       119 li~GR~i~Gl~~gl~~~~~pmyl~E~s---P~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~  195 (485)
T KOG0569|consen  119 LILGRLIVGLACGLSTGLVPMYLTEIS---PKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPAL  195 (485)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhcC---hhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHH
Confidence            999999999999999999999999998   5699999999999999999999977765 33 345669999998888877


Q ss_pred             HHHHHhhccccccccch---hhhc-cc-ccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccC
Q 011112          188 IQLLSCGLVKENRVSTK---VLKE-FS-SSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQI  262 (493)
Q Consensus       188 l~~i~~~~~~e~~~~~~---~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (493)
                      +..+...+.||+|++.-   ++++ +. .++.+|.-++       +....+++      .+.+            +++. 
T Consensus       196 ~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~-------~~~~~e~~------~~e~------------~~~~-  249 (485)
T KOG0569|consen  196 LQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKED-------VEAEIEEM------LREI------------EEEE-  249 (485)
T ss_pred             HHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCc-------chhHHHHH------HHHH------------HHhc-
Confidence            77777788999998762   1111 11 1221110000       00000000      0000            0000 


Q ss_pred             CCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHH--HHhcccCCCcceeeeee---ccCCCCHHHHHHHHHHHH
Q 011112          263 PEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFL--AHVAVPNLSTVMFYYQT---EILNLEASFLGTARVVGW  337 (493)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~---~~~g~s~~~~gl~~~~~~  337 (493)
                                   ..++.-..++++++||.....+...+.  ....+.+.+.. .+|.+   ...|++.++.-......+
T Consensus       250 -------------~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai-~~Yst~i~~~aG~~~~~a~~an~~~g  315 (485)
T KOG0569|consen  250 -------------LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAI-FFYSTSIFKTAGFTPEEAQYANLGIG  315 (485)
T ss_pred             -------------cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCccee-HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                         000011135566777765544322111  11222333322 23322   237999988888888888


Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceE-e--eehhHHHHHHHHhhHhHH-HH
Q 011112          338 VGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTM-V--LYGSALVDAVNQFKFMPF-LI  413 (493)
Q Consensus       338 ~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~-~--l~~~~~~~~~~~~~~~~~-~~  413 (493)
                      ...++.++++..+.||.|||++++.+..++.+..++........+ ..+   .+. +  ++..++.....+....|. +-
T Consensus       316 ~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~-~~~---~~~~y~~i~~~~~~~~~f~~G~gpi~~f  391 (485)
T KOG0569|consen  316 IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSN-SFG---SWLSYLCIAAIFLFIISFAIGPGPIPWF  391 (485)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh---hHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence            888889999999999999999999998888876544333222111 111   111 1  111122222233344455 45


Q ss_pred             HHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhh-hhhhhcccCCCCCC
Q 011112          414 LSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIP-IAFLFLIPKGATGV  491 (493)
Q Consensus       414 ~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  491 (493)
                      +.+|++|++.|.++++.....+.+.+.+-...-..+.+.+|-         +.++++++.+.+. +.+..++||++++=
T Consensus       392 i~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~---------~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  392 IGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP---------YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             HHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            799999999999999999999988888777777777777652         2334444444444 44447999999764

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=2.5e-20  Score=192.87  Aligned_cols=365  Identities=14%  Similarity=0.151  Sum_probs=238.2

Q ss_pred             hhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 011112           39 DKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQ  117 (493)
Q Consensus        39 ~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~  117 (493)
                      +++++|.+|-+.+.+.+++++.+ +.+.|+++||+     +-|+.+..+.++.+++.++.=.+.+  ..++.+++.|++|
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-----G~r~v~~~~~~~sa~~t~l~P~aa~--~~~~~~~~~R~lq  138 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-----GARRVFFISGLISALLTLLTPLAAS--IGFYLLLVLRFLQ  138 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHH--hcchhhHHHHHHh
Confidence            36899999999999999999998 57899999996     4556677777777776665543322  2445778999999


Q ss_pred             HhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHHHhh-c
Q 011112          118 NLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN-IEIDRIFLLFTVLPAIQLLSCG-L  195 (493)
Q Consensus       118 ~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~-~gw~~~f~~~~~~~~l~~i~~~-~  195 (493)
                      |++.+...++...+.....   |++||++..++...+..+|.+++..++|++.+. +||+++||+.++++++..++++ +
T Consensus       139 Gl~~g~~~pa~~~i~~~W~---P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  139 GLGQGVLFPAIGSILAKWA---PPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HHHHhHHHhhhhceeeeEC---CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888877666   679999999999999999999999999999998 9999999999999988887765 4


Q ss_pred             cccccccchh--hhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHH
Q 011112          196 VKENRVSTKV--LKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQW  273 (493)
Q Consensus       196 ~~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (493)
                      ..|+|.+++.  +++...+++.+..+                      ..++                            
T Consensus       216 ~~d~P~~h~~is~~El~~I~~~k~~~----------------------~~~~----------------------------  245 (466)
T KOG2532|consen  216 YSDSPSKHPNISEKELKYIEKGKSEA----------------------HVKK----------------------------  245 (466)
T ss_pred             hcCCcccCCCCCHHHHHHHHhccccc----------------------ccCC----------------------------
Confidence            5555544321  00001111111000                      0000                            


Q ss_pred             HhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011112          274 FHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKR  353 (493)
Q Consensus       274 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~  353 (493)
                        .   .--+++++++++.+|...+..+..+..........|.|+.+.+|++..+.|++.....+...+..+++|++.||
T Consensus       246 --~---~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~  320 (466)
T KOG2532|consen  246 --K---PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDR  320 (466)
T ss_pred             --C---CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0   00135567888988876655554333333344455778888999999999999888888888888888888886


Q ss_pred             CCh--------hHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchH
Q 011112          354 LKL--------RRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEG  425 (493)
Q Consensus       354 ~~~--------r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  425 (493)
                      ...        ||++-..........+  +.+... +    -......+....+.....++....... ...+..|++.+
T Consensus       321 l~~~~ls~t~~rkifn~i~~~~~ai~l--~~l~~~-~----~~~~~~a~~~l~~~~~~~g~~~~Gf~~-~~~~~apq~a~  392 (466)
T KOG2532|consen  321 LTFRILSETTVRKIFNTIAFGGPAVFL--LVLAFT-S----DEHRLLAVILLTIAIGLSGFNISGFYK-NHQDIAPQHAG  392 (466)
T ss_pred             HhhccCchHhHHHHHHhHHHHHHHHHH--Heeeec-C----CCcchHHHHHHHHHHHHcccchhhhHh-hhhhccchHHH
Confidence            543        2333222222211111  111111 0    011211111111111222222222221 22232566889


Q ss_pred             HHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhh
Q 011112          426 TLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFL  481 (493)
Q Consensus       426 t~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (493)
                      ..+|+.+.+..+++.++|.+.|.+.. -    .+.+++...+.+.+++.+++-++.
T Consensus       393 ~l~g~~~~~~~~~~~~~P~~vg~~~~-~----~t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  393 FVMGIINFVGALAGFIAPLLVGIIVT-D----NTREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeEeC-C----CCHHHHHHHHHHHHHHHHHhchhe
Confidence            99999999999999999999888775 1    134556667777777776665443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.83  E-value=2e-17  Score=171.46  Aligned_cols=397  Identities=15%  Similarity=0.115  Sum_probs=224.1

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccch--
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFR--  104 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~--  104 (493)
                      +....++||++ ++|.+..+.+.+..+..+...+ +|++|.++||.+.|..|||++++.+.+..+++..++.+.++..  
T Consensus        22 l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~  100 (477)
T TIGR01301        22 LQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHL  100 (477)
T ss_pred             HHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhh
Confidence            45555667754 6999999999988777665554 9999999998666656788888777777777777776654310  


Q ss_pred             --------h---hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHh--hc
Q 011112          105 --------S---STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYA--LT  171 (493)
Q Consensus       105 --------~---~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l--~~  171 (493)
                              .   ..+.+++...+..++......+..++++|.+++ +.++++.+.++...+..+|.++|+.+|++.  .+
T Consensus       101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~-~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~  179 (477)
T TIGR01301       101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGG-DARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYK  179 (477)
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                    0   012233444445567777778889999999964 223447899999999999999999999875  22


Q ss_pred             cc-------------cHHHHHHHHHHHHHHHHH-HhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchh
Q 011112          172 NI-------------EIDRIFLLFTVLPAIQLL-SCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYN  237 (493)
Q Consensus       172 ~~-------------gw~~~f~~~~~~~~l~~i-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (493)
                      .+             +.|+.|++.+++.++..+ .++++||++..+.+..+.   +|.           ++.    ++  
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~---~~~-----------~~~----~~--  239 (477)
T TIGR01301       180 IFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN---SEA-----------APP----SK--  239 (477)
T ss_pred             hcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh---hhc-----------ccc----cc--
Confidence            21             568899988876666554 446788876432100000   000           000    00  


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeee
Q 011112          238 ISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYY  317 (493)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  317 (493)
                          .+.+       .                      .+++.++.+++.  -|.++..++..|+.+.+..........|
T Consensus       240 ----~~~~-------~----------------------~~~~i~~~~~~m--P~~m~~l~~vqffsW~a~f~~~~y~T~~  284 (477)
T TIGR01301       240 ----HGEE-------A----------------------FFGELFGAFKYL--PRPVWILLLVTCLNWIAWFPFILFDTDW  284 (477)
T ss_pred             ----cchh-------h----------------------hHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence                0000       0                      122222222221  1223444444444443322111111112


Q ss_pred             ee-ccCCCCH------HH---HHHH-HHHHHHHHHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHhhhhhhheecccc--
Q 011112          318 QT-EILNLEA------SF---LGTA-RVVGWVGLMLGTYTYNGYLKRLKLR-RILLLTQVGLSILSFLDIVLVSRMNL--  383 (493)
Q Consensus       318 ~~-~~~g~s~------~~---~gl~-~~~~~~~~~l~~~~~~~~~~~~~~r-~~l~~~~~~~~~~~l~~~~~~~~~~~--  383 (493)
                      .. +.++-++      ++   .|.. .....+...+.+++..++.+|+|.| +...++.++.+++ +....+......  
T Consensus       285 vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~-l~~~~~i~~~~~~~  363 (477)
T TIGR01301       285 MGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAIC-LAATVLVTYVAKNS  363 (477)
T ss_pred             HHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH-HHHHHHHHhhhhcc
Confidence            11 1122211      11   1333 4556666667778888999999864 4545555554443 222222221000  


Q ss_pred             -cc-C-----ccCc---eEeeeh-hHHHHHHHHhhHhHHHHHHhhcCCC--CchHHHHHHHHHHHhhhhhhhHhHHHHhH
Q 011112          384 -TV-G-----ISDK---TMVLYG-SALVDAVNQFKFMPFLILSGQLCPP--GIEGTLFALFMSISNFGSTVGSFFGAGLA  450 (493)
Q Consensus       384 -~~-g-----~~~~---~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~p~--~~~gt~~gl~~~~~~lg~~~~~~i~g~l~  450 (493)
                       .. +     .+..   ...+.. ..+.........+| ++++++..|+  +..|.++|+.|++.-+.+.+.+...|.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siP-fal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~  442 (477)
T TIGR01301       364 RYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIP-FALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWD  442 (477)
T ss_pred             ccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHh-HHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence             00 0     0110   111111 11111111223444 3567777774  56699999999999999999998888877


Q ss_pred             HhhcCCCCCccchHHHHHHHHhhhhhhhhh-hhcccCCCC
Q 011112          451 SSLSISSGSFDNLLLGISIQALCTFIPIAF-LFLIPKGAT  489 (493)
Q Consensus       451 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~  489 (493)
                      +.+|-..      ..++.+.+++.+++-++ ..++||.+.
T Consensus       443 ~~~g~~~------~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       443 QLFGGGN------LPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHcCCCC------eeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            7776321      23566677777666555 468898764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.83  E-value=2e-18  Score=173.90  Aligned_cols=363  Identities=15%  Similarity=0.129  Sum_probs=214.8

Q ss_pred             HHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHH
Q 011112           12 FLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVL   89 (493)
Q Consensus        12 ~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l   89 (493)
                      ..+.....||+.-+. +......+.+++++.|+|.+++|.+.++..+...+ +|+.|.++||.   +.||+....++..+
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl---g~kK~Ll~~i~~l~   84 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL---GLKKHLLWFIAILL   84 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC---TTCSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh---hhhHHHHHHHHHHH
Confidence            344344555554443 45566667888888999999999999988776665 99999999997   33333333333332


Q ss_pred             HHHHHHHH-hhcccchhhHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011112           90 SLVPWLIL-GLNAFFRSSTW-HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGG  167 (493)
Q Consensus        90 ~~~~~~~~-~~~~~~~~~~~-~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g  167 (493)
                      ...+-+.. .+.|-...+.+ ..++.-...++......+..|+++-+..+.     .+.-.|-...++++|.+++..++|
T Consensus        85 ~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~-----~~feYG~~R~wGSig~ai~s~~~G  159 (412)
T PF01306_consen   85 LLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR-----NGFEYGRARMWGSIGFAIASLLAG  159 (412)
T ss_dssp             HTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH-----HSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH-----hcCCcchHHHHhhHHHHHHHHHhh
Confidence            22222222 22221011111 111111122444445556778887776643     344456666778999999999999


Q ss_pred             HhhccccHHHHHHHHHHHHHHHHHHhhcc-ccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhh
Q 011112          168 YALTNIEIDRIFLLFTVLPAIQLLSCGLV-KENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKN  246 (493)
Q Consensus       168 ~l~~~~gw~~~f~~~~~~~~l~~i~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (493)
                      .+.+. +-+..||+.....++..++.++. |+++++....       +             ...   +          + 
T Consensus       160 ~L~~i-~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~-------~-------------~~~---~----------~-  204 (412)
T PF01306_consen  160 ILFNI-NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA-------D-------------ALG---A----------K-  204 (412)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS-------T-------------TSS---S------------
T ss_pred             eeeee-CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh-------c-------------ccc---c----------C-
Confidence            99874 55778887665555554443333 3333222100       0             000   0          0 


Q ss_pred             hhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeec---cCC
Q 011112          247 KKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTE---ILN  323 (493)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~g  323 (493)
                                                   +.+...++..+++|+|++|...++.......+.....-.+.|...   ..+
T Consensus       205 -----------------------------~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~  255 (412)
T PF01306_consen  205 -----------------------------KDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAG  255 (412)
T ss_dssp             ----------------------------------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH
T ss_pred             -----------------------------CCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                                         011124567788999999887665433222111111111222222   123


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHH
Q 011112          324 LEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAV  403 (493)
Q Consensus       324 ~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~  403 (493)
                      .+.+.+|.+...+.+.+.+...+..++.+|+|.|+.++++..++.+=.. ...+.         ++.+.+...-.++..-
T Consensus       256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~-~~~~~---------~~~~~i~~~klLH~~e  325 (412)
T PF01306_consen  256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRII-GSGFA---------TNPWVISLIKLLHALE  325 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHT-----------SHHHHHHHHHHHHHH
T ss_pred             cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHH-HHhhh---------cchHHHHHHHHHHHHH
Confidence            3445678888888899999999999999999999999999888765321 11111         2233333334556555


Q ss_pred             HHhhHhHHHHHHhhcCCCCchHHHHHHH-HHHHhhhhhhhHhHHHHhHHhhcCC
Q 011112          404 NQFKFMPFLILSGQLCPPGIEGTLFALF-MSISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       404 ~~~~~~~~~~~~~~~~p~~~~gt~~gl~-~~~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                      ..+...+.+-++.+..|++..+|.+.+. +...++|..+.+.++|.+.|++|++
T Consensus       326 ~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~  379 (412)
T PF01306_consen  326 FPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQ  379 (412)
T ss_dssp             HHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcH
Confidence            5667777888999999999999999885 5667789999999999999998864

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.82  E-value=1.2e-17  Score=176.36  Aligned_cols=170  Identities=11%  Similarity=0.127  Sum_probs=130.8

Q ss_pred             hHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhh-HhhhhhhhhcccccccCCCCchhHHHHHHH
Q 011112           11 SFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFP-WSIKPLYGILSDCIPIKGRKRIPYLVISTV   88 (493)
Q Consensus        11 ~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~-~~~~~~~G~lsDr~~~~g~~rr~~ii~~~~   88 (493)
                      +.++.+....+...+. +.....++.|+++++|+|.++.++..+.+... +...+++|+++||+    .+||+.++.+.+
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~----~G~r~~~~~g~~   96 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKV----LGTKRVIMLGAI   96 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHH
Confidence            3456566666776665 35566778888899999999988877665533 33457899999993    267888888888


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011112           89 LSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGY  168 (493)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~  168 (493)
                      +..++..++++.++   ..+.+.+.+.+++++.+...+...+++.|..+++ +++|+++.++++.+.++|..+||.++|+
T Consensus        97 ~~~ig~~l~~~~~~---~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~-~~~~~~~~~~~~~~~~iG~~~gp~i~g~  172 (500)
T PRK09584         97 VLAIGYALVAWSGH---DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKD-DPRLDGAFTMYYMSINIGSFFSMLATPW  172 (500)
T ss_pred             HHHHHHHHHHHhcc---cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCC-chhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            88888777776532   2345567788899998888788889999998642 3456678899999999999999999999


Q ss_pred             hhccccHHHHHHHHHHHHHH
Q 011112          169 ALTNIEIDRIFLLFTVLPAI  188 (493)
Q Consensus       169 l~~~~gw~~~f~~~~~~~~l  188 (493)
                      +.+++|||+.|++.++...+
T Consensus       173 l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        173 LAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHhhCHHHHHHHHHHHHHH
Confidence            99999999999987754333

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.81  E-value=4.3e-19  Score=191.88  Aligned_cols=307  Identities=11%  Similarity=0.063  Sum_probs=208.5

Q ss_pred             hhHHHHHHH-HHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112           10 VSFLWLICL-IYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus        10 ~~~~~~~~~-~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      ++.+.+... .++.+++.. .....++ .++++|+++.++.|++.+.+.+++.+ .++.|+++||     .+||+++..+
T Consensus        31 ~~~~~~~~~~~~~~~~~~~g~~~~~l~-~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-----~~r~~~i~~g  104 (633)
T TIGR00805        31 IKVFSLLLTCAQLQGLLYNGLVNSSLT-TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-----LHRPIVIGIG  104 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhch-hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-----cCcceEEEec
Confidence            444433333 445566543 6656554 45788999999999999999999887 7899999999     4788899999


Q ss_pred             HHHHHHHHHHHhhcccc-----------------------------------------------hhhHHHHHHHHHHHHh
Q 011112           87 TVLSLVPWLILGLNAFF-----------------------------------------------RSSTWHLIVLLTAQNL  119 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~-----------------------------------------------~~~~~~l~~~~~l~~~  119 (493)
                      .++..++.+++++.+..                                               ...+..+++.|+++|+
T Consensus       105 ~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~Gi  184 (633)
T TIGR00805       105 CAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGI  184 (633)
T ss_pred             HHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhc
Confidence            99999998888765300                                               0024457789999999


Q ss_pred             hhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------cHHH
Q 011112          120 GSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI----------------------EIDR  177 (493)
Q Consensus       120 ~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~----------------------gw~~  177 (493)
                      |.+...+...+++.|..   |+++|++..|++.....+|..+|+++++++.+.+                      +|+.
T Consensus       185 G~~~~~~~~~~~i~d~~---~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl  261 (633)
T TIGR00805       185 GATPIFPLGISYIDDFA---KSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI  261 (633)
T ss_pred             cCCcchhcCchhhhccC---CccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence            99999999999999988   4589999999999999999999999999887532                      2777


Q ss_pred             HHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhh
Q 011112          178 IFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKI  257 (493)
Q Consensus       178 ~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (493)
                      .|++.+++.++..+..+++|++.+....+.+ .+.++.+..++.     ++     +.      ....            
T Consensus       262 ~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~-~~~~~~~~~~~~-----~~-----~~------~~~~------------  312 (633)
T TIGR00805       262 GFLICGGVALLTSIPFFFFPKALPKEGKRVN-VDVHETEKLEKS-----ED-----KS------RKKN------------  312 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhCccccCCcccccc-hhhhhhhccccc-----cc-----cc------chhh------------
Confidence            8988887777666555556654332210000 000000000000     00     00      0000            


Q ss_pred             hhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHH
Q 011112          258 RKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGW  337 (493)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~  337 (493)
                                      ....++..+.++++++||.++...+..++...........++.|+++.+|+++.+++++.....
T Consensus       313 ----------------~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~  376 (633)
T TIGR00805       313 ----------------SDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVN  376 (633)
T ss_pred             ----------------hhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhh
Confidence                            0012333456678899998877665555444444444445577777789999999998865544


Q ss_pred             H-HHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHHH
Q 011112          338 V-GLMLGTYTYNGYLKRLK--LRRILLLTQVGLSIL  370 (493)
Q Consensus       338 ~-~~~l~~~~~~~~~~~~~--~r~~l~~~~~~~~~~  370 (493)
                      + +.+++.+++|++.||++  .|+.+..+.++..++
T Consensus       377 i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~  412 (633)
T TIGR00805       377 LPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS  412 (633)
T ss_pred             hhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence            4 67889999999999887  566666666555554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.80  E-value=1.7e-18  Score=179.76  Aligned_cols=294  Identities=16%  Similarity=0.116  Sum_probs=204.8

Q ss_pred             HHHHHHHHHhHH-H-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHH
Q 011112           15 LICLIYFTQGFR-S-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSL   91 (493)
Q Consensus        15 ~~~~~~f~~g~~-~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~   91 (493)
                      .++..|+.+..+ . +.+..+.. +++|.+....+.|...+++..+|++ +++.|.+.||+|     -.+.+....+...
T Consensus        49 ~~~~~y~~~~~d~~si~~a~l~g-~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~-----ls~~l~~~~~~w~  122 (495)
T KOG2533|consen   49 FLCYLYFHAYLDKSSIVNASLSG-LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFP-----LSKGLSVSGILWG  122 (495)
T ss_pred             HHHHHHHHHhcchhcchhHHHcC-CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCC-----hHHHHHHHHHHHH
Confidence            344445666654 2 55555444 3678999999999999999999998 799999999974     2334444333333


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh-
Q 011112           92 VPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL-  170 (493)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~-  170 (493)
                      +..++....    ++++.+++.|++.|+..+...|+..+++....+   ++|||..+|++.+...+|.++|.++...+. 
T Consensus       123 ~~~~~~~~~----~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~---~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~  195 (495)
T KOG2533|consen  123 LFGFLTAAV----HSFPGLIALRFLLGLFESGGWPGVVAILGNWYG---KSERGLRMGIWYASASLGNIFGGLIAYGVFK  195 (495)
T ss_pred             HHHHHHHHH----hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcC---hhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence            333222223    368889999999999999999999999988885   499999999999999999999999988864 


Q ss_pred             -----ccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhccc-ccCCCcccCCCCcccCCCCCccccchhhhhhhh
Q 011112          171 -----TNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFS-SSNGYHQVNGNESILDDEDGFSEEKYNISTKKR  243 (493)
Q Consensus       171 -----~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (493)
                           ...||||.|++.+++.+...+.+ +++|+.|.+..-..+.+ .+. .++.++.+.    +  .          ..
T Consensus       196 ~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~-~~~~~~~~~----~--~----------~~  258 (495)
T KOG2533|consen  196 LNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV-VERLRESPS----G--G----------IE  258 (495)
T ss_pred             hcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHH-HHHHHhccC----C--C----------cc
Confidence                 35689999999998888887665 46887765331111100 000 000000000    0  0          00


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCC
Q 011112          244 KKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILN  323 (493)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g  323 (493)
                      +                               +  ...+.+++.+++|++|...++.++......+.....+.|..+..|
T Consensus       259 ~-------------------------------~--~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~  305 (495)
T KOG2533|consen  259 N-------------------------------K--FKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGG  305 (495)
T ss_pred             c-------------------------------c--cCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCC
Confidence            0                               1  112356788899999998877777666555555555666666577


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHh
Q 011112          324 LEASFLGTARVVGWVGLMLGTYTYNGYLKR----LKLRRILLLTQVGLSILS  371 (493)
Q Consensus       324 ~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~----~~~r~~l~~~~~~~~~~~  371 (493)
                      +|..+...+.++..++.+++.++.+.+.||    ...|..+.....+....+
T Consensus       306 ~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g  357 (495)
T KOG2533|consen  306 YSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG  357 (495)
T ss_pred             cChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999    556666666666655544

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=99.78  E-value=7.5e-17  Score=162.01  Aligned_cols=399  Identities=17%  Similarity=0.179  Sum_probs=239.2

Q ss_pred             HHHHHHHHHhHH-HhHHHHHHHHHHh-hhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccccCC-CCchhHHHHHHHHHH
Q 011112           15 LICLIYFTQGFR-SFVWTAVSYQLKD-KLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKG-RKRIPYLVISTVLSL   91 (493)
Q Consensus        15 ~~~~~~f~~g~~-~~~~~~~~~~l~~-~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g-~~rr~~ii~~~~l~~   91 (493)
                      ++.+.|++||.. ++....+|.++++ .-++|.+|.|. +|+...|+++|.+|.|++|.+..++ .|||.|++..+.+..
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~-fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g   82 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAI-FSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSG   82 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHhee-eeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHH
Confidence            477899999996 6766677777765 24788999885 6788899999999999999876553 378889998888888


Q ss_pred             HHHHHHhhcc----------cc-----hh-----hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHH
Q 011112           92 VPWLILGLNA----------FF-----RS-----STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLS  151 (493)
Q Consensus        92 ~~~~~~~~~~----------~~-----~~-----~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~  151 (493)
                      +.++.++...          +.     +.     ....+...+++.-+-.+.+|++.|+....+..+   ++++.+...-
T Consensus        83 ~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~---~n~~~ASTcq  159 (544)
T PF13000_consen   83 ILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSP---ENVGYASTCQ  159 (544)
T ss_pred             HHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcCh---hhcchHHHHH
Confidence            7777766443          10     00     122345666677788899999999999988864   5566554444


Q ss_pred             HHHHHHHHHHHHHHHHHhhcc-----c--------c---H-HHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCC
Q 011112          152 WLAMAFGGICGSLLGGYALTN-----I--------E---I-DRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNG  214 (493)
Q Consensus       152 ~~~~~~G~~lg~~i~g~l~~~-----~--------g---w-~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~  214 (493)
                      ..+++.|..++-.+--.+-+.     +        |   - .....+..+..++...+.++.+|++..+.. ++....++
T Consensus       160 tvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~-~~~~~~~~  238 (544)
T PF13000_consen  160 TVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESL-PKIEPINK  238 (544)
T ss_pred             HhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccC-cccccccc
Confidence            445555555544443333220     0        1   0 122222222212222344555665533310 00000000


Q ss_pred             CcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchH
Q 011112          215 YHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEIL  294 (493)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  294 (493)
                      ++...+......+|...          ..++                           -..+.++..+.+++.+|.|.+.
T Consensus       239 ~~~~~~~~~~~~~~~~~----------~~~~---------------------------~~~~i~~~Y~~l~~ilkLp~V~  281 (544)
T PF13000_consen  239 SDGKSKEISIEYDESDV----------ISTE---------------------------EILSIKDVYKSLWKILKLPNVQ  281 (544)
T ss_pred             ccccccccceecccccc----------cchh---------------------------hhhhHHHHHHHHHHHHcCchHH
Confidence            00000000000000000          0000                           0015677888899999999987


Q ss_pred             HHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh------------------
Q 011112          295 RPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKL------------------  356 (493)
Q Consensus       295 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~------------------  356 (493)
                      ...+..+...+.+.. +.....+...+.|++.++.+++.++-....++.+...+|+.+..++                  
T Consensus       282 ~li~ilL~~KigF~a-~da~T~LKLlEkG~~KE~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~  360 (544)
T PF13000_consen  282 TLIIILLTAKIGFQA-NDAVTSLKLLEKGLSKEDLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKII  360 (544)
T ss_pred             HHHHHHHHHHhcccc-chhhhHHHHHHcCCCHHHhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchh
Confidence            766665555555443 2233344445689999999998877777777877777777653331                  


Q ss_pred             ---------hHHHHHHHHHHHHHhhhhhhheeccccccCccCceE--eeehhHHHHHHHHhhHhHHHHHHhhcCCCCchH
Q 011112          357 ---------RRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTM--VLYGSALVDAVNQFKFMPFLILSGQLCPPGIEG  425 (493)
Q Consensus       357 ---------r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  425 (493)
                               -+....+.....+..++....+...+...+.+...+  ++....++++.....+++.+++.+++++|..-|
T Consensus       361 ~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IGG  440 (544)
T PF13000_consen  361 RLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGG  440 (544)
T ss_pred             hhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Confidence                     022222332222222222222333321112222222  244456677777888899999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhHhHHHHhHHhhcCC
Q 011112          426 TLFALFMSISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       426 t~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                      |++.+.|++.|+|+.....+.=.+.|.+..+
T Consensus       441 TYMTLLNTvSNLGGtWP~~~vL~lVD~fT~~  471 (544)
T PF13000_consen  441 TYMTLLNTVSNLGGTWPRTFVLWLVDYFTVA  471 (544)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHhhhcccc
Confidence            9999999999999999998888888877554

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.77  E-value=3.4e-17  Score=158.84  Aligned_cols=332  Identities=19%  Similarity=0.197  Sum_probs=192.1

Q ss_pred             CCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhh
Q 011112           42 KFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLG  120 (493)
Q Consensus        42 g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~  120 (493)
                      +.+..-.|++-+.+.+.-.+ +|.||-++||     ++||+.++.+.+..+++.++.+.+.    ++..+++.|++.|+.
T Consensus        64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-----yGRkpvll~c~~~va~s~ll~~~S~----~F~afv~aR~l~Gi~  134 (451)
T KOG2615|consen   64 GASVFYAGFLGSSFSILQFISSPLWGCLSDR-----YGRKPVLLACLIGVALSYLLWALSR----NFAAFVLARFLGGIF  134 (451)
T ss_pred             cccchhhhhHhhHHHHHHHHhhhhhhhhhhh-----hCchHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhc
Confidence            33444567777777776665 8999999999     4899999999999999888777764    564556669999998


Q ss_pred             hhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc---cccHHHHHHHHHHHHHHH-----HHH
Q 011112          121 SAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT---NIEIDRIFLLFTVLPAIQ-----LLS  192 (493)
Q Consensus       121 ~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~---~~gw~~~f~~~~~~~~l~-----~i~  192 (493)
                      .+... +..++++|+.++   ++|+..++...++..+|.++||++||++..   ..| +..|........+.     ...
T Consensus       135 kgnl~-v~rAiisdV~se---k~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g-~~p~alP~~~v~i~a~~~v~~~  209 (451)
T KOG2615|consen  135 KGNLS-VIRAIISDVVSE---KYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG-SYPFALPCLLVFILAAGDVTFF  209 (451)
T ss_pred             cCchH-HHHHHHHhhcCh---hhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence            88776 467999999964   899999999999999999999999999987   222 22222211111111     123


Q ss_pred             hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHH
Q 011112          193 CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQ  272 (493)
Q Consensus       193 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (493)
                      .+++||+-+.++.+ |     +..   +.++++.++.            + ..                           
T Consensus       210 ~~~lpETL~~rk~~-~-----~~~---~~~~~~~~~~------------~-~~---------------------------  240 (451)
T KOG2615|consen  210 PWFLPETLPLRKRN-D-----EHS---TLQEAADDRL------------A-LL---------------------------  240 (451)
T ss_pred             HHhCCccccchhhc-c-----ccc---chhhhhhhhh------------h-hc---------------------------
Confidence            45688885444211 1     000   0000000000            0 00                           


Q ss_pred             HHhhHHHHHHHHHHhhcccc------hHHHHH-HHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHH
Q 011112          273 WFHSLKAAIYSLYSAFRQPE------ILRPMA-WFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTY  345 (493)
Q Consensus       273 ~~~~~~~~~~~~~~~l~~~~------~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~  345 (493)
                         +.++  ..-...+||+.      +++.+. -.++....+.........+....+|+++.+.|.+....++.+.+...
T Consensus       241 ---~~~~--~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql  315 (451)
T KOG2615|consen  241 ---KFAR--IFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQL  315 (451)
T ss_pred             ---chhh--hhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHH
Confidence               0000  00112223322      111111 11111111222211222333456899999999876655555555445


Q ss_pred             HHHHHHhcCC--hhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCc
Q 011112          346 TYNGYLKRLK--LRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGI  423 (493)
Q Consensus       346 ~~~~~~~~~~--~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  423 (493)
                      ...+..+|..  .+-.+.....++.-.    ..+...      .+....+-....+..++......-.+.++....|+++
T Consensus       316 ~~~~~l~~~~~~~~a~l~~~l~~~vP~----~llls~------~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q  385 (451)
T KOG2615|consen  316 ALVPILPRYKGNIKAVLLFSLLLIVPA----FLLLSL------ARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ  385 (451)
T ss_pred             hccccccccccchhhHHHHHHHHHHHH----HHHHhc------cccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc
Confidence            4555555443  333333333333221    111111      1111111112233334433333334677889999999


Q ss_pred             hHHHHHHHHHHHhhhhhhhHhHHHHhHH
Q 011112          424 EGTLFALFMSISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       424 ~gt~~gl~~~~~~lg~~~~~~i~g~l~~  451 (493)
                      ||+.+|+..+.+.+++++||.++|.+.+
T Consensus       386 rG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  386 RGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            9999999999999999999999987766

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.77  E-value=3.4e-16  Score=166.24  Aligned_cols=384  Identities=19%  Similarity=0.176  Sum_probs=220.4

Q ss_pred             hHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHH
Q 011112           47 ASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMAD  125 (493)
Q Consensus        47 ~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~  125 (493)
                      +.+++.+...++..+ +++.|.++|++     +||+.++.+.+++.++.+++++++    +.+.+.+.|+++|+|.+...
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-----GRk~~l~~~~~~~~iG~ii~~~a~----~~~~l~~GR~l~G~g~G~~~  160 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-----GRKKTLLLAVVLFLIGAIIIALAP----SWYQLIVGRILTGLGVGGAS  160 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHhccchhhhh
Confidence            448888889888877 79999999995     789999999999999999999886    57889999999999999999


Q ss_pred             HHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHHHhhccccccccch
Q 011112          126 VVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN-IEIDRIFLLFTVLPAIQLLSCGLVKENRVSTK  204 (493)
Q Consensus       126 ~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~-~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~  204 (493)
                      ....-+++|+.   |++.||...+..+....+|..+|.+++....+. .+||..+.+..+.+++..+..+++||+|++..
T Consensus       161 ~~~piy~sEia---p~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~  237 (513)
T KOG0254|consen  161 VLAPVYISEIA---PAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLI  237 (513)
T ss_pred             hcchhhHhhcC---ChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence            99999999998   458999999999999999999996665554332 48999999888887777777778999998774


Q ss_pred             hhhcc---c-ccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHH
Q 011112          205 VLKEF---S-SSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAA  280 (493)
Q Consensus       205 ~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (493)
                      ++.+.   . .+...+   +..+   ++.    +.        ..       .  +++.+        .........++.
T Consensus       238 ~~g~~~~a~~~l~~l~---g~~~---~~~----~~--------~~-------~--~~~~~--------~~~~~~~~~~~~  282 (513)
T KOG0254|consen  238 EKGRLEEAKRSLKRLR---GLSP---EDV----EV--------EL-------E--LLKIK--------LLVEAEVAEGKA  282 (513)
T ss_pred             HcCChHHHHHHHHHHh---CCCC---cch----HH--------HH-------H--HHHHH--------HHHhhhcccccc
Confidence            32110   0 000000   0000   000    00        00       0  00000        000000000000


Q ss_pred             HHHHHHhhcccchHHHHH-HH-HHHHhcccCCCcceeeeee---ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 011112          281 IYSLYSAFRQPEILRPMA-WF-FLAHVAVPNLSTVMFYYQT---EILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLK  355 (493)
Q Consensus       281 ~~~~~~~l~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~---~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~  355 (493)
                        ...+.++ |....... .. ........+.+.. .+|..   +..|.+... ........+...++..+...+.||.|
T Consensus       283 --~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~-~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~g  357 (513)
T KOG0254|consen  283 --SWGELFS-PKVRKRLIIGLLLQLFQQLTGINYV-FYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFG  357 (513)
T ss_pred             --cHHHhcC-cchHHHHHHHHHHHHHHHHhCCceE-EeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              0111121 32222111 11 1111222333333 23322   225555332 22233344445555555678889999


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhheeccccccCcc--CceEeeehhHHHHHHHHhhHhHH-HHHHhhcCCCCchHHHHHHHH
Q 011112          356 LRRILLLTQVGLSILSFLDIVLVSRMNLTVGIS--DKTMVLYGSALVDAVNQFKFMPF-LILSGQLCPPGIEGTLFALFM  432 (493)
Q Consensus       356 ~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~--~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~gt~~gl~~  432 (493)
                      ||+.++.+...+.++...............+..  ..++.+...++........+.|. +.+.+|..|.+.|+++.++..
T Consensus       358 Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~  437 (513)
T KOG0254|consen  358 RRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAV  437 (513)
T ss_pred             cHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHH
Confidence            999999999888876543222111100000000  01111111222222222333444 357899999999999999988


Q ss_pred             HHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhh-h-hhcccCCCCC
Q 011112          433 SISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIA-F-LFLIPKGATG  490 (493)
Q Consensus       433 ~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~  490 (493)
                      .++.+.+.+-......+.+..+     ..   ..+.....++.+... + ..++||++++
T Consensus       438 ~~n~~~~~~v~~~~~~~~~~~~-----~~---~~f~~f~~~~~~~~~~fv~~~~pETkg~  489 (513)
T KOG0254|consen  438 AVNWLWNFLISFFFPFITEALG-----IG---GTFGYFGGICLLSLIIFVFFFVPETKGL  489 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-----cc---chHHHHHHHHHHHHHHHheEEcccCCCC
Confidence            8887766444433333333322     01   122233333333333 3 4699998764

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.77  E-value=2.5e-16  Score=154.76  Aligned_cols=358  Identities=17%  Similarity=0.195  Sum_probs=243.5

Q ss_pred             hhhchhHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            6 NVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         6 ~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      |+.+..+.. +...+|+-|+..-.+..+.|.+++.++.|..|.+.+...++-+|.+ ..+.|.+.+|+     ++|+-++
T Consensus         9 ~~~~~~~v~-~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-----gyk~gi~   82 (422)
T COG0738           9 KSVKLAFVL-LTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-----GYKAGIV   82 (422)
T ss_pred             CCceeHHHH-HHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-----hhHHHHH
Confidence            334444444 6666788888764556677888999999999999999999999987 67899999995     6788889


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL  164 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~  164 (493)
                      ++..++++++.+..-+.+ ..++..+++..++.+.|.+..++.++.++..+.++   ++..+-+++.+....+|.++||.
T Consensus        83 lgL~l~avg~~lF~pAa~-~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~---~~a~~rlnl~q~fn~lGa~~gp~  158 (422)
T COG0738          83 LGLLLYAVGAALFWPAAS-SKSYGFFLVALFILASGIGLLETAANPYVTLLGKP---ESAAFRLNLAQAFNGLGAILGPL  158 (422)
T ss_pred             HHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCc---hhHHHHHHHHHHhhhhHHHHHHH
Confidence            999999999887753322 23666788888999999999999999999999865   34445578888899999999999


Q ss_pred             HHHHhhcc-------------------ccHHHHHHHHHHHHHHHHHHhhcc--ccccccchhhhcccccCCCcccCCCCc
Q 011112          165 LGGYALTN-------------------IEIDRIFLLFTVLPAIQLLSCGLV--KENRVSTKVLKEFSSSNGYHQVNGNES  223 (493)
Q Consensus       165 i~g~l~~~-------------------~gw~~~f~~~~~~~~l~~i~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~  223 (493)
                      +++++..+                   ..|++++...+...+++.+.....  ||.+....                   
T Consensus       159 ~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~-------------------  219 (422)
T COG0738         159 LGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAP-------------------  219 (422)
T ss_pred             HHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccc-------------------
Confidence            99988763                   137788887776555444443322  22221110                   


Q ss_pred             ccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHH
Q 011112          224 ILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLA  303 (493)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~  303 (493)
                          +.               +                              +.++.  ...+.+|+|.++...+..|++
T Consensus       220 ----~~---------------~------------------------------~~~~~--~~~~l~~~~~~~~gvl~~FlY  248 (422)
T COG0738         220 ----SL---------------G------------------------------ASGSA--GLSSLFQNKHLRLGVLAIFLY  248 (422)
T ss_pred             ----cc---------------c------------------------------ccccc--hHHHHHhChHHHHHHHHHHHH
Confidence                00               0                              00000  133556788887777777773


Q ss_pred             HhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheecccc
Q 011112          304 HVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNL  383 (493)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~  383 (493)
                      ..........++.|+.+..|+++++.+......+++.++|..++.++.+|+..+|.+....++..+..+. ..+.     
T Consensus       249 VG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~-~~l~-----  322 (422)
T COG0738         249 VGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA-VALI-----  322 (422)
T ss_pred             HhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH-HHHh-----
Confidence            3333333333455665668999999999999999999999999999999999999998887665543221 1111     


Q ss_pred             ccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCC
Q 011112          384 TVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSIS  456 (493)
Q Consensus       384 ~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~  456 (493)
                          ++.. .+......+...+..+...++...+..|++-+..  |....+.-.|+++-|.+-|++.|..|..
T Consensus       323 ----~g~v-~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~--s~~l~maivGGAiiP~l~G~i~d~~g~~  388 (422)
T COG0738         323 ----GGVV-ALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVG--SGLLVMAIVGGAIIPPLQGVIADMFGIQ  388 (422)
T ss_pred             ----cChH-HHHHHHHHHHHhHHHHHHHHHHHHhccCcccccc--ceeeeeheecchHHHHHHHHHHHhhhhH
Confidence                1111 0111122223333333334677777777443333  3334456679999999999999988753

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.76  E-value=1.9e-16  Score=156.54  Aligned_cols=371  Identities=16%  Similarity=0.154  Sum_probs=235.3

Q ss_pred             HHHHHHHHHHhhhCC---CHhh----HHHHHHHHHhh-HhhhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhc
Q 011112           29 VWTAVSYQLKDKLKF---SPSA----SQFVSAVAFFP-WSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLN  100 (493)
Q Consensus        29 ~~~~~~~~l~~~~g~---s~~~----~g~~~s~~~l~-~~~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~  100 (493)
                      .....|+|+++..+.   ++.+    .|...++..+. ..+.|+.|.++|..    ..||+++-....+..++...+.+.
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~----g~Rk~~~~~f~~i~i~~~~~L~~i  109 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP----GPRKKFFGFFTAIGIISTFLLWFI  109 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC----CCcchHHHHHHHHHHHHHHHHHHh
Confidence            344556777776554   4433    23334444333 34589999999984    467777777777777787777777


Q ss_pred             ccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH--HHh-h-------
Q 011112          101 AFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG--GYA-L-------  170 (493)
Q Consensus       101 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~--g~l-~-------  170 (493)
                      ++. +..+..++...+...+.....+.+|++..++.++   ++-++..++-+...++|+.+--+..  +.+ .       
T Consensus       110 ~~~-s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k---~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~  185 (438)
T COG2270         110 PPG-SYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTK---DNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITI  185 (438)
T ss_pred             CCC-chHHHHHHHHHHHHHhcchhheehhhHhhhhcCc---cccCcccccccccccccchHHHHHHHHHHhcccccceeE
Confidence            653 3455566677788899999999999999999854   6667777777777788877654442  111 1       


Q ss_pred             --------ccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhh
Q 011112          171 --------TNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTK  241 (493)
Q Consensus       171 --------~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (493)
                              +...-|..+.+.++.-++..+.. +.+|+.++... +                     .     ++      
T Consensus       186 ~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~-~---------------------~-----~~------  232 (438)
T COG2270         186 ILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISS-P---------------------P-----PT------  232 (438)
T ss_pred             EeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccc-c---------------------c-----hH------
Confidence                    23346778888887776666543 44554332110 0                     0     00      


Q ss_pred             hhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeecc
Q 011112          242 KRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEI  321 (493)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  321 (493)
                                                    ..++++|+...++++..+++.+...++--++..-...+.......|...+
T Consensus       233 ------------------------------~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~  282 (438)
T COG2270         233 ------------------------------ALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAAD  282 (438)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                                          01113444444455555566665554333332211122222223455667


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHH
Q 011112          322 LNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVD  401 (493)
Q Consensus       322 ~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~  401 (493)
                      +|++..+..+..+...+.+++|+++++++.+|++.|+++..+.++..+..+..+ ...        ...-+++....+..
T Consensus       283 ~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~-~~~--------~~~~f~i~gll~g~  353 (438)
T COG2270         283 LGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI-FLE--------GELDFWILGLLVGT  353 (438)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH-Hcc--------ccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888776543221 111        11112222111111


Q ss_pred             HHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhh
Q 011112          402 AVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFL  481 (493)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (493)
                      ..+. .....-++..++.|++++++.+|+++..++.+..+||+..+.+.+..|..       ...+....+.-+++++.+
T Consensus       354 s~G~-~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~-------r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         354 SLGG-AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS-------RAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             hcch-HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch-------hhHHHHHHHHHHhhHhhE
Confidence            1111 11112357899999999999999999999999999999999999987642       233444455556677766


Q ss_pred             hcccCC
Q 011112          482 FLIPKG  487 (493)
Q Consensus       482 ~~l~~~  487 (493)
                      ..+|..
T Consensus       426 ~~v~~~  431 (438)
T COG2270         426 LRVKVP  431 (438)
T ss_pred             EeecCC
Confidence            666633

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.74  E-value=9.8e-16  Score=159.55  Aligned_cols=168  Identities=16%  Similarity=0.139  Sum_probs=124.3

Q ss_pred             chhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +++.++.++...+...+.. .....++.|+++++|.++.+.+...+.+.....+ .++.|+++||+    .+||+.++.+
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRi----lGrrr~iliG   82 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKV----LGNRMAVMLG   82 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCcHHHHHHH
Confidence            5566665555556666653 5566677788888999999999988887766555 66899999995    3678888888


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      .++..++.++++..++   ....+.+...+..+|.+...+...+++.|..++ ++++|.+..++.+...++|..++|.+.
T Consensus        83 ~il~~lg~lll~~~~~---~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~-~~~~R~sgf~i~Y~~~nlG~~iap~l~  158 (493)
T PRK15462         83 ALLMAIGHVVLGASEI---HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEP-TDPRRDGGFSLMYAAGNVGSIIAPIAC  158 (493)
T ss_pred             HHHHHHHHHHHHHhhc---chhHHHHHHHHHHHhcccccccHHHHHHHHCCC-CCccccceehHHHHHHHHHHHHHHHHH
Confidence            8888888766654321   111223333344455555555667889999864 235788899999999999999999999


Q ss_pred             HHhhccccHHHHHHHHHH
Q 011112          167 GYALTNIEIDRIFLLFTV  184 (493)
Q Consensus       167 g~l~~~~gw~~~f~~~~~  184 (493)
                      +++.++.|||+.|.+.++
T Consensus       159 g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462        159 GYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             HHHHhhhChHHHHHHHHH
Confidence            999999999999998664

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.74  E-value=1.7e-17  Score=164.44  Aligned_cols=421  Identities=14%  Similarity=0.106  Sum_probs=242.9

Q ss_pred             hchhHHHHH---HHHHHHHhHHH-hHHHHHHHHHHh-hhCCC-------HhhHHHHHHHHHhhHhh-hhhhhhccccccc
Q 011112            8 FGVSFLWLI---CLIYFTQGFRS-FVWTAVSYQLKD-KLKFS-------PSASQFVSAVAFFPWSI-KPLYGILSDCIPI   74 (493)
Q Consensus         8 ~~~~~~~~~---~~~~f~~g~~~-~~~~~~~~~l~~-~~g~s-------~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~   74 (493)
                      .+|+..-++   ...+|+++++. .++.. .+++.. ++|.+       ..-.+.+-....++-++ |.++|++.|++  
T Consensus        35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lV-t~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~--  111 (538)
T KOG0252|consen   35 LQWKHFKAIIIAGMGFFTDSYDLFSISLV-TKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF--  111 (538)
T ss_pred             hhHHHHHHHHHhhhhhcccchhhhhHHHH-HHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence            466666544   33346688875 34333 333333 34433       33445555566777777 89999999995  


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhcccc--h-hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHH
Q 011112           75 KGRKRIPYLVISTVLSLVPWLILGLNAFF--R-SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLS  151 (493)
Q Consensus        75 ~g~~rr~~ii~~~~l~~~~~~~~~~~~~~--~-~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~  151 (493)
                         +||+.....+++.+++..++++....  . ....++...|++.|+|.+.-+|.+.+..+|...   .++||...+..
T Consensus       112 ---GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an---~~~RGa~iaav  185 (538)
T KOG0252|consen  112 ---GRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESAN---KKTRGAFIAAV  185 (538)
T ss_pred             ---cchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhh---hccccceeEEE
Confidence               67888888888888888777665432  1 356778899999999999999999999999984   59999988888


Q ss_pred             HHHHHHHHHHHHHHHHHhhc----c-----------ccHHHHHHHHHHHHHHHHHHhhccccccccch--hhh-c--ccc
Q 011112          152 WLAMAFGGICGSLLGGYALT----N-----------IEIDRIFLLFTVLPAIQLLSCGLVKENRVSTK--VLK-E--FSS  211 (493)
Q Consensus       152 ~~~~~~G~~lg~~i~g~l~~----~-----------~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~--~~~-~--~~~  211 (493)
                      ...+..|.+.|.+++-.+..    .           .-||..|.+.++++++.....+.+||+++...  +++ +  +..
T Consensus       186 Fa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d  265 (538)
T KOG0252|consen  186 FAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGD  265 (538)
T ss_pred             EEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhc
Confidence            77777777766666554432    1           13999999888777666666778999987651  100 0  000


Q ss_pred             cCCCc--ccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhc
Q 011112          212 SNGYH--QVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFR  289 (493)
Q Consensus       212 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  289 (493)
                      .+++.  .+++.+.+  ++..++.           +       .                   .+..+...+.. |   .
T Consensus       266 ~~k~~~~~~~~~~~~--~~~~~~~-----------~-------~-------------------~~~~F~~~f~~-~---h  302 (538)
T KOG0252|consen  266 MKKVLSVDIEAESTA--ESDVPPP-----------S-------N-------------------SFGLFSRLFLR-W---H  302 (538)
T ss_pred             cccccccccchhhcc--ccCCCCc-----------c-------c-------------------ccchHHHHHHH-H---H
Confidence            11000  00000000  0000000           0       0                   00001100000 0   0


Q ss_pred             ccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHH--------HH-HHHHHHHHHHHHHHHHHHHhcCChhHHH
Q 011112          290 QPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLG--------TA-RVVGWVGLMLGTYTYNGYLKRLKLRRIL  360 (493)
Q Consensus       290 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~g--------l~-~~~~~~~~~l~~~~~~~~~~~~~~r~~l  360 (493)
                      -+.+.....-.|+.-+++...+-...... +..|+.+....        .. .+....+.+.|-.+...+.|++|++++.
T Consensus       303 g~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq  381 (538)
T KOG0252|consen  303 GKHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH
Confidence            01122222222222222221111110011 11343322211        11 1222333333445556778999999999


Q ss_pred             HHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhH-HHHHHhhcCCCCchHHHHHHHHHHHhhhh
Q 011112          361 LLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMP-FLILSGQLCPPGIEGTLFALFMSISNFGS  439 (493)
Q Consensus       361 ~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~gt~~gl~~~~~~lg~  439 (493)
                      +.+.+++.+..++   +...++...  ....+ +++..+.++.+.+.-.. .....+|..|.+.|++..|+....+.+|.
T Consensus       382 ~~GF~~~~i~~~~---~~~~y~~~~--~~~Gf-~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GA  455 (538)
T KOG0252|consen  382 LMGFFIMTIFFFV---IAGPYNQLE--NTIGF-VVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGA  455 (538)
T ss_pred             HhhHHHHHHHHHH---HcCCccccc--ccCce-eehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchH
Confidence            9999998876433   222222111  11222 22334444444332111 13457899999999999999999999999


Q ss_pred             hhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhcccCCCCC
Q 011112          440 TVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKGATG  490 (493)
Q Consensus       440 ~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  490 (493)
                      .++...-..+.++-   -...-++...+.+...|+++++++.+++||++++
T Consensus       456 ivg~~~F~~~t~~~---yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~  503 (538)
T KOG0252|consen  456 IVGAFGFLYLTDHN---YPPNIGVRNVFIILAGCMLLGILFTLLIPETKGK  503 (538)
T ss_pred             HHHHHHhhHhhhcc---CCccccchHHHHHHHHHHHHhHheeEEeeccccc
Confidence            99988777777631   1122345667888999999999999999987764

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.74  E-value=6.5e-16  Score=164.53  Aligned_cols=379  Identities=15%  Similarity=0.112  Sum_probs=231.1

Q ss_pred             hhhCCCHhhHHHHHHHHHhhHhhhh-hhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 011112           39 DKLKFSPSASQFVSAVAFFPWSIKP-LYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQ  117 (493)
Q Consensus        39 ~~~g~s~~~~g~~~s~~~l~~~~~~-~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~  117 (493)
                      +.+..+........++++++..+++ ++|+++||+     +||+.++.+.++.+++....++++    +++.+.++|++.
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-----GRk~~~~~~~~~~~i~~~~~a~a~----~~~~~~~~Rfl~  181 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-----GRKPVLLVSLLLFIIFGILTAFAP----NYWMFLIFRFLS  181 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-----ccHHHHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHH
Confidence            4567778888888999999999965 799999994     789999999999999988888886    688999999999


Q ss_pred             HhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhccc
Q 011112          118 NLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVK  197 (493)
Q Consensus       118 ~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~  197 (493)
                      |++.+........++.|...   +++|+.+..+ ......++.+++.+++++.+  +||+.+++..++.++.++.+++.|
T Consensus       182 G~~~~~~~~~~~~~~~E~~~---~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~  255 (521)
T KOG0255|consen  182 GFFGSGPLTVGFGLVAEIVS---PKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPP  255 (521)
T ss_pred             HhhccchhHHhHhhheeecC---cchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999999999984   5999999999 88888888899999999987  899999998888777766666677


Q ss_pred             cccccchhhhc---ccccCCCc-ccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHH
Q 011112          198 ENRVSTKVLKE---FSSSNGYH-QVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQW  273 (493)
Q Consensus       198 e~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (493)
                      |++++...+.+   +....++. +.|+..     .  .+ ++.     .+..                          ..
T Consensus       256 Es~rwl~~~g~~~~a~~~l~~~a~~n~~~-----~--~~-~~~-----~~~~--------------------------~~  296 (521)
T KOG0255|consen  256 ESPRWLLSKGRIDEAIKILKKIAKLNGRK-----L--SV-KEL-----LRLE--------------------------LL  296 (521)
T ss_pred             cChHHHHHcCchHHHHHHHHHHHhhcCCC-----C--Cc-HHH-----HHHH--------------------------HH
Confidence            99887742211   11100000 000000     0  00 000     0000                          00


Q ss_pred             HhhHHH----HHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011112          274 FHSLKA----AIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNG  349 (493)
Q Consensus       274 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~  349 (493)
                      .+..+.    ....+.+.++.|+.....++..+.+........... +....+|-+   ..+.....+.....+....+.
T Consensus       297 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~-~~~~~lg~~---~~~~~~~~~~~~~p~~~~~~~  372 (521)
T KOG0255|consen  297 LRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLS-LNVSGLGGN---IYLNFTLSGLVELPAYFRNGL  372 (521)
T ss_pred             hhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhh-hhhhhcCch---HHHHHHHHHHHHhhHHHHHHH
Confidence            000000    001234555666544433333322211111100000 101112222   222222233355555555677


Q ss_pred             HHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHH
Q 011112          350 YLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFA  429 (493)
Q Consensus       350 ~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~g  429 (493)
                      ..++.|||.....+..+..++.+...+....       ...........+..+..+..+...+.+.+|+.|...|.++.+
T Consensus       373 ~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~  445 (521)
T KOG0255|consen  373 LLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD-------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVG  445 (521)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            8888888888888877776654332222110       110111112233333334444555778999999999999999


Q ss_pred             HHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhcccCCCCC
Q 011112          430 LFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKGATG  490 (493)
Q Consensus       430 l~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  490 (493)
                      ..+....++..++|.+.-.... +.      ..+...+ ...+..+.+++...++||..+.
T Consensus       446 ~~~~~~~~~~i~ap~~~~~~~~-~~------~~~~~~~-~~~~~~l~~~~~~~~lpet~~~  498 (521)
T KOG0255|consen  446 AISAAARLGSILAPLFPLLLRQ-MF------PLLGLIL-FGWLALLLGLLSLLLLPETKGK  498 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-hc------ccchHHH-HHHHHHHHHHHHHhcCcccCCC
Confidence            9999999999999887554443 21      1112122 2333344444444788887664

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=99.73  E-value=4.6e-16  Score=150.33  Aligned_cols=366  Identities=16%  Similarity=0.149  Sum_probs=220.2

Q ss_pred             HHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccccC-CCCchhHHHHHHHH
Q 011112           12 FLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIK-GRKRIPYLVISTVL   89 (493)
Q Consensus        12 ~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~-g~~rr~~ii~~~~l   89 (493)
                      ...++.+.|.+||.. ++.. .+|.+++. =|+|.++.+. .+...+||+++.+|.|++|.+..+ ..|||.|++-++.+
T Consensus        32 ~illLl~LYllQGiP~GL~~-~iP~lL~a-k~vSyt~~a~-fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~l  108 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIPLGLIG-AIPLLLQA-KGVSYTSQAI-FSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYL  108 (510)
T ss_pred             hHHHHHHHHHHcCCchhHhh-hhHHHhcC-CCcchhhhhh-hhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHH
Confidence            334477999999996 5776 77777774 5899998885 667788999999999999944332 13788888888877


Q ss_pred             HHHHHHHHhhcccc-------hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHH
Q 011112           90 SLVPWLILGLNAFF-------RSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICG  162 (493)
Q Consensus        90 ~~~~~~~~~~~~~~-------~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg  162 (493)
                      ....++.++...+.       ..+...+...+++..|.++.+|++.|+....+..+   ++.|-+    .+++++|.-.|
T Consensus       109 lG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~---e~lgya----ST~q~Vg~~~G  181 (510)
T KOG3574|consen  109 LGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR---ENLGYA----STCQSVGQTAG  181 (510)
T ss_pred             HHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH---hhcCch----hHHHHHHHhhh
Confidence            66666666654321       12233344566788999999999999999998854   555544    44555555555


Q ss_pred             HHHHHHhh----c-------cccHH----------HHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCC
Q 011112          163 SLLGGYAL----T-------NIEID----------RIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGN  221 (493)
Q Consensus       163 ~~i~g~l~----~-------~~gw~----------~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  221 (493)
                      ..++..+.    +       ..+|.          ..+++.....+...+.+++-+|++....         |       
T Consensus       182 yfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~---------~-------  245 (510)
T KOG3574|consen  182 YFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVD---------E-------  245 (510)
T ss_pred             HHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhh---------h-------
Confidence            55555332    2       01221          3333333221222223333333322210         0       


Q ss_pred             CcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHH
Q 011112          222 ESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFF  301 (493)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  301 (493)
                                  |+        +        .                      +.++..+-++++++-|.+.....+..
T Consensus       246 ------------e~--------~--------~----------------------~i~~~yk~l~~vLklk~v~~la~i~l  275 (510)
T KOG3574|consen  246 ------------EL--------E--------L----------------------GIHESYKLLRDVLKLKSVRWLAGILL  275 (510)
T ss_pred             ------------hh--------h--------c----------------------CHHHHHHHHHHHHcCccHHHHHHHHH
Confidence                        00        0        0                      23444556777788887765555444


Q ss_pred             HHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChh-----HHHHHHH-HHHHHHhhhh
Q 011112          302 LAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKR-LKLR-----RILLLTQ-VGLSILSFLD  374 (493)
Q Consensus       302 l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~-~~~r-----~~l~~~~-~~~~~~~l~~  374 (493)
                      ...+.+... ..+......+.|++.++.+++.++.....++.+...|++..+ .+..     ..+-+.. .+..+  +  
T Consensus       276 t~K~gf~a~-da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~--L--  350 (510)
T KOG3574|consen  276 TGKLGFQAA-DALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTA--L--  350 (510)
T ss_pred             HHHHHhhhh-hhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHH--H--
Confidence            444444433 333445555689999999988766666666766666666552 2211     0111111 11111  1  


Q ss_pred             hhheecccc-ccCccCce--EeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHH
Q 011112          375 IVLVSRMNL-TVGISDKT--MVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       375 ~~~~~~~~~-~~g~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~  451 (493)
                      .+....+.. ....+...  +++....+.+......++..|++.++++||...||+|++.|+..|+|+..-..+...+.|
T Consensus       351 v~~~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D  430 (510)
T KOG3574|consen  351 VWWTPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD  430 (510)
T ss_pred             HhhhcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence            111111111 00011111  122223445555555667778899999999999999999999999999999999999999


Q ss_pred             hhcCCCC
Q 011112          452 SLSISSG  458 (493)
Q Consensus       452 ~~g~~~~  458 (493)
                      .+++.+|
T Consensus       431 ~ltv~~C  437 (510)
T KOG3574|consen  431 GLTVKQC  437 (510)
T ss_pred             cCceeec
Confidence            8887654

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.72  E-value=3.3e-15  Score=144.16  Aligned_cols=400  Identities=14%  Similarity=0.081  Sum_probs=221.4

Q ss_pred             hchhHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +||.-..........+.+-.+....+.|-+.+.+|.+..|...+....+.++.+ +-.||..+|++     +||+-...+
T Consensus        75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-----grr~~f~~T  149 (528)
T KOG0253|consen   75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-----GRRKGFNLT  149 (528)
T ss_pred             chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-----hcchhhhhh
Confidence            566555544444444444334444556777888998888888888888899988 57899999996     344455555


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      ....++.-.+-+..+    ++..+.+.|.+.++|.+. .+...++-.|..   |..+|+...-.. ..+.+|.+....+.
T Consensus       150 ~l~t~v~~~is~~sp----nf~~L~~f~~l~~~g~gg-~pv~~~~yle~l---p~~~r~~~~V~~-~~waig~v~ea~la  220 (528)
T KOG0253|consen  150 FLVTGVFGVISGASP----NFASLCVFRALWGFGVGG-LPVDSAIYLEFL---PSSHRWLLTVMS-FFWAIGQVFEALLA  220 (528)
T ss_pred             HHHHHHHHHhhcCCC----CeehhhHHHHHHhccCCC-ccHhHHHHHHhc---cCcCCCcchhHH-HHHHHHHHHHHHHH
Confidence            555555555555555    566788999999998888 445556667776   446777655555 88999999999999


Q ss_pred             HHhhccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhc---ccc-cCCCcccCCCCcccCCCC----Cccccchhh
Q 011112          167 GYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKE---FSS-SNGYHQVNGNESILDDED----GFSEEKYNI  238 (493)
Q Consensus       167 g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~  238 (493)
                      -.+..++||||......++..+.+..++++||++|..-.+.+   +.. +++-.++|+.+.|.-...    ..++|+++ 
T Consensus       221 w~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~-  299 (528)
T KOG0253|consen  221 WGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEES-  299 (528)
T ss_pred             HHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhh-
Confidence            888899999998877775554555677889999876532211   111 122224444333222110    01111110 


Q ss_pred             hhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHh-hcccchHHHH-HHHH-HHHh--cccCCCcc
Q 011112          239 STKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSA-FRQPEILRPM-AWFF-LAHV--AVPNLSTV  313 (493)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~~~-l~~~--~~~~~~~~  313 (493)
                                    +..|++.+.+-+--...-+-+..++++.=-.+|.. +.|+...... ++.- +.+.  ..+..+.-
T Consensus       300 --------------~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~  365 (528)
T KOG0253|consen  300 --------------DLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRF  365 (528)
T ss_pred             --------------chhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhc
Confidence                          00111100000000011111111222111112221 2222211111 1100 0011  11111111


Q ss_pred             eeeeeecc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCce
Q 011112          314 MFYYQTEI--LNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKT  391 (493)
Q Consensus       314 ~~~~~~~~--~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~  391 (493)
                      .+++++..  .-.+...--.-.....+...-|.++.+.+.||+|+|+++-...++..+..++......        ++..
T Consensus       366 ~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~--------rn~~  437 (528)
T KOG0253|consen  366 LPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKT--------RNAY  437 (528)
T ss_pred             chhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC--------cchh
Confidence            12222110  1122211111234566677788888899999999999998888777765433222221        2211


Q ss_pred             EeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHH
Q 011112          392 MVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFG  446 (493)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~  446 (493)
                      ..+  .+...++-...+-..++|..|.+|...|+++.|++++++.+|+.+.|.++
T Consensus       438 tvl--lf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  438 TVL--LFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             HHH--HHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence            111  11122222222223356789999999999999999999999999999988

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.70  E-value=1.2e-20  Score=197.02  Aligned_cols=386  Identities=19%  Similarity=0.169  Sum_probs=218.8

Q ss_pred             hHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHH
Q 011112           47 ASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMAD  125 (493)
Q Consensus        47 ~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~  125 (493)
                      +.++..+...++..+ .++.|.++||+     +||+.++.+.++..++.++.+++++. .+++.+.+.|++.|++.+...
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-----GRk~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~R~~~G~~~g~~~  120 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-----GRKPALIISALLMIIGSILIAFAPSY-NNFWMLLIGRFLIGFGIGGAY  120 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-----cccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            456777888888887 68899999995     67788888988888888888877632 246778899999999999999


Q ss_pred             HHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc---ccHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011112          126 VVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN---IEIDRIFLLFTVLPAIQLLSCGLVKENRVS  202 (493)
Q Consensus       126 ~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~---~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~  202 (493)
                      +....++.|..   |+++||+..++...+..+|..++..++-.+.+.   .+||..+.+.+++.++..+..+++||+|++
T Consensus       121 ~~~~~~~~E~~---~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~w  197 (451)
T PF00083_consen  121 VVSPIYISEIA---PPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRW  197 (451)
T ss_pred             ccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence            99999999998   458999999999999999999888877655433   349999988887766666666789999987


Q ss_pred             chhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHH
Q 011112          203 TKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIY  282 (493)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (493)
                      ...+.+..+  .++.+++.+..+.++....++.      ...++      .                     ++.+   .
T Consensus       198 L~~~~~~~~--A~~~l~~~~~~~~~~~~~~~~~------~~~~~------~---------------------~~~~---~  239 (451)
T PF00083_consen  198 LLSKGRDEE--AEKVLRKLRGKEIEDEEIEEIK------AEKKE------S---------------------QESK---A  239 (451)
T ss_pred             ecccccccc--cccccccccccccccccccccc------ccccc------c---------------------cccc---e
Confidence            743221100  0001111000000000000000      00000      0                     0000   1


Q ss_pred             HHHHhhcccc----hHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Q 011112          283 SLYSAFRQPE----ILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRR  358 (493)
Q Consensus       283 ~~~~~l~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~  358 (493)
                      ...+.++++.    ....+......................+..|.+..  -.......+...++.++...+.||+|+|+
T Consensus       240 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~  317 (451)
T PF00083_consen  240 SWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRK  317 (451)
T ss_pred             eeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            1222333322    11111111110111100111111112233555554  11122233344455555567889999999


Q ss_pred             HHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHH-HHHHhhcCCCCchHHHHHHHHHHHhh
Q 011112          359 ILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPF-LILSGQLCPPGIEGTLFALFMSISNF  437 (493)
Q Consensus       359 ~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~gt~~gl~~~~~~l  437 (493)
                      +++.+.....+..+.............-......+. ...+..+.......+. ..+..|..|.+.|+++.++...++++
T Consensus       318 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i  396 (451)
T PF00083_consen  318 LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIV-FLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRI  396 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccce-eeeeccccccccccccccccccccccccccccccccccccccc
Confidence            998888777665432210011000000000111111 1111111222223333 36789999999999999999999999


Q ss_pred             hhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhh-hhcccCCCCC
Q 011112          438 GSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAF-LFLIPKGATG  490 (493)
Q Consensus       438 g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~  490 (493)
                      ++.+++.+...+.+..+.        ...+.+.+.++++..++ ..++||++++
T Consensus       397 ~~~i~~~~~~~~~~~~~~--------~~~~~i~~~~~~i~~i~~~~~lpET~g~  442 (451)
T PF00083_consen  397 GGFIIPFLFPYLFNNLGG--------WGVFLIFAGVCLIAIIFVYFFLPETKGK  442 (451)
T ss_pred             cccccccccccccccccc--------cccchhhHHHHHHHHhheeEEEeeCCCC
Confidence            998888887777765541        11223333334444433 4689999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.69  E-value=2.2e-15  Score=158.07  Aligned_cols=367  Identities=14%  Similarity=0.121  Sum_probs=228.6

Q ss_pred             HHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHH
Q 011112           34 SYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIV  112 (493)
Q Consensus        34 ~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~  112 (493)
                      .+.++++++.+..+++|..++....+.+ +|+.+.+.||+     +.|...+.|.++..+++++.++++    +.|.+++
T Consensus        69 ~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-----g~R~v~i~G~~v~~~g~~lssF~~----~i~~l~l  139 (509)
T KOG2504|consen   69 FEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-----GCRTVMIAGGLVAALGLLLSSFAT----SLWQLYL  139 (509)
T ss_pred             HHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-----CchHHHHHHHHHHHHHHHHHHHHh----hHHHHHH
Confidence            4556788999999999999988766555 89999999995     678899999999999999988886    4666555


Q ss_pred             HH-HHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Q 011112          113 LL-TAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLL  191 (493)
Q Consensus       113 ~~-~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i  191 (493)
                      .. ++.|+|.+....+...++..+++    ++|+.+.|+...+..+|..+-|.+..++.+.+|||+.+++.+.+.+-.++
T Consensus       140 t~gvi~G~G~~~~~~paiviv~~YF~----kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~  215 (509)
T KOG2504|consen  140 TFGVIGGLGLGLIYLPAVVILGTYFE----KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLV  215 (509)
T ss_pred             HHHHHhhccchhhhcchhhhhhhHhH----HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            44 56789999999888888887774    89999999999999999999999999999999999999998877644444


Q ss_pred             Hhhcccc-ccccchhhhcc-----cccCCC-----cccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhc
Q 011112          192 SCGLVKE-NRVSTKVLKEF-----SSSNGY-----HQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKS  260 (493)
Q Consensus       192 ~~~~~~e-~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (493)
                      ....+++ ..+..++..++     +..+..     ++....+..+.+.  ..+++   .+..+..       .       
T Consensus       216 ~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~-------~-------  276 (509)
T KOG2504|consen  216 AGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKL--SLSNL---ATLKRGP-------D-------  276 (509)
T ss_pred             HHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcc--cccch---hhhhhCC-------c-------
Confidence            3333332 11111000000     000000     0000000000000  00000   0000000       0       


Q ss_pred             cCCCCCCchhHHHHhhHHHHHHH-HHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHH
Q 011112          261 QIPEKNNPLVIQWFHSLKAAIYS-LYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVG  339 (493)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~  339 (493)
                          ++     +. ...+..... =.+++|+|.++...+...+....+.......+.|.. ..|++..+...+..+.++.
T Consensus       277 ----~~-----~~-~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~  345 (509)
T KOG2504|consen  277 ----KW-----RN-SPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVS  345 (509)
T ss_pred             ----cc-----cc-cchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHh
Confidence                00     00 011111110 146788887766555444444443333222333433 5899999999998888899


Q ss_pred             HHHHHHHHHHHHhcCChhH--HHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHH-HHHHh
Q 011112          340 LMLGTYTYNGYLKRLKLRR--ILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPF-LILSG  416 (493)
Q Consensus       340 ~~l~~~~~~~~~~~~~~r~--~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~  416 (493)
                      .+++.++.|.+.|+...++  ...++.++..++.+. ....         .........+.+.+.+.+. +... ...+.
T Consensus       346 ~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~-~p~~---------~~~~~l~~~~~~fG~~~g~-~~~l~~~i~~  414 (509)
T KOG2504|consen  346 DIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLF-LPFA---------TTYVGLIVFSILFGFCVGS-FSSLTPVILV  414 (509)
T ss_pred             hhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHH-HHHh---------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            9999999999999887433  444444444443211 1111         1111111122222222221 1122 24688


Q ss_pred             hcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          417 QLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       417 ~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ++++.++-..++|+...++.++..+||.+.|.+.|..|
T Consensus       415 ~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg  452 (509)
T KOG2504|consen  415 DLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG  452 (509)
T ss_pred             HHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC
Confidence            89999999999999999999999999999998888754

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.68  E-value=1.7e-14  Score=146.48  Aligned_cols=177  Identities=18%  Similarity=0.191  Sum_probs=137.7

Q ss_pred             hhHHH-HHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhh-HHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112           10 VSFLW-LICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSA-SQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus        10 ~~~~~-~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~-~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      |+..- ++|+..|+.-+........ |++++++|+|++| .|.+.+.+.++|.+ +.+.|+++||+     |-|+.+..+
T Consensus        25 W~~~~~~lC~fGF~~e~R~n~s~a~-p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-----G~K~vL~l~   98 (511)
T TIGR00806        25 WRVLVLYLCFYGFMAQFRPGESFIT-PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-----RYKPVLVLQ   98 (511)
T ss_pred             hhHHHHHHHHHHHHHHhhchHHHHH-HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHH
Confidence            44444 3555557777765333443 4567799999999 99999999999987 78999999995     567888999


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      .+...+...++.+.+    +...+.++|++.|++.+... +...++...+   |+++|+++.|+...+..+|.+++++++
T Consensus        99 ~l~Wsl~t~L~~fa~----Sl~~L~i~R~llGvaEA~~~-A~~syI~~Wf---P~kER~ratsi~~sg~~vG~~Ia~~L~  170 (511)
T TIGR00806        99 ALSFVCVWLLLLLGT----SVWHMQLMEVFYSVTMAARI-AYSSYIFSLV---PPSRYQRAAAYSRAAVLLGVFLSSVLG  170 (511)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888888764    57788999999999999988 8888887777   569999999999999999999999999


Q ss_pred             HHhhccccHHHHHHHHHHHHHH---HHHHhhccccccc
Q 011112          167 GYALTNIEIDRIFLLFTVLPAI---QLLSCGLVKENRV  201 (493)
Q Consensus       167 g~l~~~~gw~~~f~~~~~~~~l---~~i~~~~~~e~~~  201 (493)
                      ++ ...+|||+-+.+.-+-...   .++..+++|.+++
T Consensus       171 ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       171 QL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            99 4567999766554322221   2234467775544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.64  E-value=5.2e-14  Score=136.59  Aligned_cols=325  Identities=13%  Similarity=0.094  Sum_probs=206.5

Q ss_pred             HHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 011112           31 TAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWH  109 (493)
Q Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~  109 (493)
                      .++.+.+++|+|+|.+..|.++++-.+.+.+ +|+..+++.|+     +-++.+..++++.+++..+=...     ..+.
T Consensus        32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-----g~er~l~~~Llli~~G~~iR~~~-----~~~~  101 (395)
T COG2807          32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-----GEERSLFLALLLIAAGILIRSLG-----GLPL  101 (395)
T ss_pred             hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----hhHHHHHHHHHHHHHHHHHHhcc-----cHHH
Confidence            3556677889999999999999998888876 89999999875     45667777777777776654433     2334


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHH
Q 011112          110 LIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI-EIDRIFLLFTVLPAI  188 (493)
Q Consensus       110 l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~-gw~~~f~~~~~~~~l  188 (493)
                      ++..-.+.+.|.+...+...+++.+-+    +++-+..+|+|.....+|..+++.+.-.+.++. |||.....-+.++++
T Consensus       102 L~~gt~l~G~gIav~nVLLPslIK~~F----pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~all  177 (395)
T COG2807         102 LFLGTLLAGAGIAVINVLLPSLIKRDF----PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALL  177 (395)
T ss_pred             HHHHHHHHHhhHHHHHHhhhHHHHhhc----ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHH
Confidence            555555667777666555555555444    588999999999999999999999999998887 799988777766655


Q ss_pred             HHHHhhccccc-cccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCC
Q 011112          189 QLLSCGLVKEN-RVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNN  267 (493)
Q Consensus       189 ~~i~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (493)
                      .++.++  |.. +++..+      .++                              +       .              
T Consensus       178 Al~~Wl--Pq~~r~~~~~------~~~------------------------------~-------~--------------  198 (395)
T COG2807         178 ALLIWL--PQALREQAAS------IAT------------------------------K-------L--------------  198 (395)
T ss_pred             HHHHHh--hhcccccccc------ccc------------------------------c-------c--------------
Confidence            555554  432 211100      000                              0       0              


Q ss_pred             chhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011112          268 PLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTY  347 (493)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~  347 (493)
                                +    +-..+.|+|..|.+.+|+-+....+......++.++. +.|+|+++.|.+.....+..+..++..
T Consensus       199 ----------~----~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~  263 (395)
T COG2807         199 ----------V----SVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLI  263 (395)
T ss_pred             ----------c----cccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHH
Confidence                      0    0112457888888887766644443333333344443 479999999977655566666666665


Q ss_pred             HHHHhcC-ChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHH-HhhcCCCCchH
Q 011112          348 NGYLKRL-KLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLIL-SGQLCPPGIEG  425 (493)
Q Consensus       348 ~~~~~~~-~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~g  425 (493)
                      -.+.+|. +.|+......+++.+ ++..+.+...       ...+.|   ..+.+...+..+.-.+++ ..+..+++..+
T Consensus       264 P~la~R~~n~r~~~~~~~~~~l~-G~~G~~~~P~-------~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa  332 (395)
T COG2807         264 PLLARRSKNQRPLVVLALLLMLV-GLVGLLLAPG-------QLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAA  332 (395)
T ss_pred             HHHHHHhcccchHHHHHHHHHHH-HHHHHHHhhh-------hHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHH
Confidence            5555544 344444444444443 3443332211       111222   111111112122212333 44556688888


Q ss_pred             HHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          426 TLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       426 t~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ...|..++++++=...||.+.|.+-|..|
T Consensus       333 ~LSgmaQg~GYllAa~GP~l~G~lhDa~g  361 (395)
T COG2807         333 ALSGMAQGVGYLLAAFGPWLFGFLHDATG  361 (395)
T ss_pred             HHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence            88999999999888999999999999864

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.63  E-value=7.9e-14  Score=146.96  Aligned_cols=377  Identities=14%  Similarity=0.130  Sum_probs=208.2

Q ss_pred             HHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 011112           31 TAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWH  109 (493)
Q Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~  109 (493)
                      ..+.+++..|+|-+ ....|+.+...++-++ .|+.|.++|.+     +||..++.+.++.+++...++.++    +...
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-----GRr~~~i~g~~l~vvG~Iv~atA~----~~~~  133 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-----GRRYFFIIGSLLGVVGSIVCATAQ----NMNT  133 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-----cchHHHHHHHHHHHhHHHHhhcCC----cHHH
Confidence            34456677889954 5577888877777665 79999999995     688899999999999999988876    5677


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Q 011112          110 LIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQ  189 (493)
Q Consensus       110 l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~  189 (493)
                      ++..-.+.++|.+.+.. .+..++|+.+   .+.|+...++...........++.++..+..+.+|||.|++..++..+.
T Consensus       134 ~iag~~l~GvgaG~~~~-~~~~isEl~p---~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~  209 (599)
T PF06609_consen  134 FIAGMVLYGVGAGVQEL-AALAISELVP---NKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIA  209 (599)
T ss_pred             HHHHHHHHHHhhHHHHH-HHHHHHHhcc---cchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHH
Confidence            88898999999888875 4556889884   4777766655555444544567777777766779999999998877766


Q ss_pred             HHHh-hcc-ccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCC-CCC
Q 011112          190 LLSC-GLV-KENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIP-EKN  266 (493)
Q Consensus       190 ~i~~-~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  266 (493)
                      ++.+ ++. |.++++.+. ++.   ++.+++.     ..|-.+...     ....-..       .+..+++.... ..|
T Consensus       210 ~vl~~~fY~PP~~~~~~~-~~~---s~~~~l~-----~lD~IG~~L-----~~~Gl~L-------fLlgl~wgG~~~~~W  268 (599)
T PF06609_consen  210 LVLIFFFYFPPPRAQLHG-RKL---SKREQLK-----ELDWIGIFL-----FIAGLAL-------FLLGLSWGGYPYYPW  268 (599)
T ss_pred             HHHHHHHhCCCchhhhcc-ccC---cHHHHHH-----HhhHHHHHH-----HHHHHHH-------HHHHHhccCCCCCCC
Confidence            5443 333 322211100 000   0000000     000000000     0000000       11122222222 134


Q ss_pred             Cc------hhH--------HHHhhHHHHHHHH--HHhhcccchHH-HHHHHHHHHhcccCCCcceeeeeeccCCCCH---
Q 011112          267 NP------LVI--------QWFHSLKAAIYSL--YSAFRQPEILR-PMAWFFLAHVAVPNLSTVMFYYQTEILNLEA---  326 (493)
Q Consensus       267 ~~------~~~--------~~~~~~~~~~~~~--~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~---  326 (493)
                      .+      +..        .+.+.....-+++  ++++|+++.+. .++..|+....+.......+......++-|+   
T Consensus       269 ~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~  348 (599)
T PF06609_consen  269 KSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISI  348 (599)
T ss_pred             CCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccc
Confidence            33      100        0111110000111  36677755433 3333333221111111111111111233332   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHH
Q 011112          327 SFLGTARVVGWVGLMLGTYTYNGYLKRLKL-RRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQ  405 (493)
Q Consensus       327 ~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~-r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~  405 (493)
                      ...++......++...|+.+.+.+..+.++ |+.++++.+++.+. +-.+.....       ++.-...+...+.+...+
T Consensus       349 ~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~-~Gama~~~~-------~n~~~~i~~~~l~g~giG  420 (599)
T PF06609_consen  349 TEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAF-CGAMAAVRP-------DNKNAAIAFLVLAGFGIG  420 (599)
T ss_pred             ceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHH-HHHHHHccC-------CCcchHHHHHHHHHHhHH
Confidence            245666667777888888777777776554 44445665555432 111222211       121122233344444445


Q ss_pred             hhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhH
Q 011112          406 FKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLA  450 (493)
Q Consensus       406 ~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~  450 (493)
                      +...+..+..+-.+|++.-|++.|+..++..+|+++|..+...+.
T Consensus       421 ~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  421 GILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             HHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            555566666777899999999999999999999999977654443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.60  E-value=3.3e-15  Score=139.33  Aligned_cols=369  Identities=15%  Similarity=0.127  Sum_probs=215.8

Q ss_pred             HHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchh-HHHHHHHHHHHHHHHHhhcccchhhHH
Q 011112           31 TAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIP-YLVISTVLSLVPWLILGLNAFFRSSTW  108 (493)
Q Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~-~ii~~~~l~~~~~~~~~~~~~~~~~~~  108 (493)
                      .++..+.+.+.+++.++..++-+++.+|..+ ..+.|++.||.    .+-|. .++.+.+ ..++-++++. ....+.+|
T Consensus        64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~----fgir~gtii~~~f-v~~GqliFa~-Ggi~~aFw  137 (459)
T KOG4686|consen   64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRR----FGIRLGTIILCIF-VFLGQLIFAA-GGISHAFW  137 (459)
T ss_pred             hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhh----hhhhHHHHHHHHH-HHHHHHHHHh-chHHHHHH
Confidence            3445566778888888888888889999887 67899999984    22332 2333333 3344443332 22335789


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc-------HHHH--H
Q 011112          109 HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIE-------IDRI--F  179 (493)
Q Consensus       109 ~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~g-------w~~~--f  179 (493)
                      .....|++.|+|.-...++-+.++...++   -+|.+.++|+.....-+|+.+-..+.+++++..+       -+..  -
T Consensus       138 ~M~~GRF~FGIGgESlAVaQN~yav~wFK---GKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~  214 (459)
T KOG4686|consen  138 TMLAGRFLFGIGGESLAVAQNKYAVYWFK---GKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLW  214 (459)
T ss_pred             HHHhhheeeccCchhhhhhhcceeEEEec---CccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHH
Confidence            99999999999887777766777665554   4889999999999999999988888888887533       1100  0


Q ss_pred             HHHHHHHHHHHHHh-hc--cccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhh
Q 011112          180 LLFTVLPAIQLLSC-GL--VKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFK  256 (493)
Q Consensus       180 ~~~~~~~~l~~i~~-~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (493)
                      .+.+.......+.+ +-  .-+++ .+       ++.+++.-..+|.|+.+|                            
T Consensus       215 l~~~~~tc~~slical~lg~~D~r-Ae-------rilh~e~g~~Ge~pkLtd----------------------------  258 (459)
T KOG4686|consen  215 LCFEVKTCKQSLICALSLGLSDDR-AE-------RILHLEEGFLGEEPKLTD----------------------------  258 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhH-HH-------HHHhhhcCcccCCccccc----------------------------
Confidence            11111111111111 11  11111 11       000000000000000000                            


Q ss_pred             hhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhc-ccCCCcceeeeeeccCCCCHHHHHHHHHH
Q 011112          257 IRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVA-VPNLSTVMFYYQTEILNLEASFLGTARVV  335 (493)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~s~~~~gl~~~~  335 (493)
                                          .    ++    + .|.+|......++.+.+ +|. .+.-+.+.++.+|+|+...+.+...
T Consensus       259 --------------------v----~~----f-~ppfw~~~iicv~yyva~fPF-i~lg~~fF~~rfGlS~~~a~~i~s~  308 (459)
T KOG4686|consen  259 --------------------V----NT----F-YPPFWVLVIICVLYYVAWFPF-ITLGPMFFQKRFGLSAVSAGNILST  308 (459)
T ss_pred             --------------------c----cc----c-CccHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhhCCChhhccchhhh
Confidence                                0    00    1 23344332222222222 222 2222446677799999998877444


Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHH
Q 011112          336 GWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILS  415 (493)
Q Consensus       336 ~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  415 (493)
                      ....+.+.+++.|.+.||+|++...+.+.++..+.+=.. ...+.++     |..    .+ .+.+..+...-+..+..+
T Consensus       309 vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~-l~Ft~ls-----Py~----~m-~~lGLsysllAcslWP~v  377 (459)
T KOG4686|consen  309 VYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSG-LFFTFLS-----PYT----SM-TFLGLSYSLLACSLWPCV  377 (459)
T ss_pred             hhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhh-HHhhhcc-----HHH----HH-HHHhhhHHHHHHHHhhhh
Confidence            444444556788999999999988888777766543111 1111121     111    11 111111122222234567


Q ss_pred             hhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhcccCCCC
Q 011112          416 GQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKGAT  489 (493)
Q Consensus       416 ~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  489 (493)
                      +.+.|+++-||++|.+++++|+|-++.+.+.|.+.|+    +++|+.+-..+.++..++++....++.+.|+..
T Consensus       378 a~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~----~g~y~~le~ffl~~~~~aL~svgil~~~N~kq~  447 (459)
T KOG4686|consen  378 ASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG----DGSYDNLEAFFLIIGLMALTSVGILFYLNKKQS  447 (459)
T ss_pred             hhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC----CCchhhHHHHHHHHHHHHHHHHHHHhheecccc
Confidence            8889999999999999999999999999999999986    345666666677777777777776777776543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.59  E-value=1.9e-13  Score=135.63  Aligned_cols=265  Identities=14%  Similarity=0.167  Sum_probs=171.8

Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-------------
Q 011112          106 STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN-------------  172 (493)
Q Consensus       106 ~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~-------------  172 (493)
                      +++.+++..++.+.|.+..++..+.++.++.+   ++++.+.+++...+..+|..+||.+++.+...             
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~---~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGP---IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            67788899999999999999999999999984   46788889999999999999999999987731             


Q ss_pred             ---ccHHHHHHHHHHHHHHHHHHhhcc--ccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhh
Q 011112          173 ---IEIDRIFLLFTVLPAIQLLSCGLV--KENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNK  247 (493)
Q Consensus       173 ---~gw~~~f~~~~~~~~l~~i~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (493)
                         .+|++++++.+.+..+..+.+.+.  ||.++++.+          +     +    ++     ++        +.  
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~----------~-----~----~~-----~~--------~~--  131 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVA----------R-----V----SS-----GD--------TT--  131 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccccc----------c-----c----cc-----cc--------cc--
Confidence               479999997766555555444333  443221100          0     0    00     00        00  


Q ss_pred             hhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeec--cCCCC
Q 011112          248 KNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTE--ILNLE  325 (493)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~g~s  325 (493)
                                                  + +      ++.+|+|.++...+..|+......+.....+.|+.+  .+|++
T Consensus       132 ----------------------------~-~------~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s  176 (310)
T TIGR01272       132 ----------------------------Q-K------TSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLP  176 (310)
T ss_pred             ----------------------------c-h------hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence                                        0 0      112344555544444444232333333444556653  37999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHH
Q 011112          326 ASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQ  405 (493)
Q Consensus       326 ~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~  405 (493)
                      +.+.+........+.++|.++.+++.||++.||.+.++.++..+..++ ....         +....... ..+.....+
T Consensus       177 ~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l-~~~~---------~~~~~~~~-~~l~g~~~s  245 (310)
T TIGR01272       177 EDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIG-AALT---------HGYVAMWF-VLALGLFNS  245 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH-HHHc---------CCHHHHHH-HHHHHHHHH
Confidence            999999988899999999999999999999999888776666554321 1111         11110111 112222222


Q ss_pred             hhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          406 FKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       406 ~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      ..+....+...+..|+ ..+++.++. ..+.+|+.+.|.+.|.+.|..|.
T Consensus       246 ~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~  293 (310)
T TIGR01272       246 IMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGI  293 (310)
T ss_pred             HHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccc
Confidence            2233335667676665 356677775 67789999999999999998765

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.53  E-value=5.4e-13  Score=135.04  Aligned_cols=175  Identities=15%  Similarity=0.160  Sum_probs=134.4

Q ss_pred             chhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhC----CCHhhHHHHHHHH-HhhHhhhhhhhhcccccccCCCCchhH
Q 011112            9 GVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLK----FSPSASQFVSAVA-FFPWSIKPLYGILSDCIPIKGRKRIPY   82 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g----~s~~~~g~~~s~~-~l~~~~~~~~G~lsDr~~~~g~~rr~~   82 (493)
                      |++.++.+...-+-.-|++ -....+..|+..+++    .|+++..-..+.+ .+.|....+.|+++||+    .++|+.
T Consensus        19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~----LG~~~t   94 (498)
T COG3104          19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRV----LGTRRT   94 (498)
T ss_pred             CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHh----cchhHH
Confidence            4566665655556666663 445555667777777    9988765555554 56776667899999997    578889


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHH
Q 011112           83 LVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICG  162 (493)
Q Consensus        83 ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg  162 (493)
                      +.+|.++.+++.+.++.....  ....+.+...+.++|.+..=+...+++.|+.++++++ |-..+++++.+.++|+.++
T Consensus        95 I~lGail~~iGh~~L~~~~~~--~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiGsl~~  171 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVS--GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGINIGSLIA  171 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccc--cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc-cCCCccEEEEEeehHHHHH
Confidence            999999999999988876311  2334567777777999999888999999999876655 7778999999999999999


Q ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHH
Q 011112          163 SLLGGYALTNIEIDRIFLLFTVLPAIQL  190 (493)
Q Consensus       163 ~~i~g~l~~~~gw~~~f~~~~~~~~l~~  190 (493)
                      |.+.+++.+++||+..|-+.++-..+.+
T Consensus       172 p~i~~~~~~~~g~~~gF~~aavGm~~gl  199 (498)
T COG3104         172 PIITGLLAINYGWHVGFGLAAVGMIIGL  199 (498)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998775433333

>PTZ00207 hypothetical protein; Provisional

Probab=99.51  E-value=6.2e-11  Score=125.87  Aligned_cols=155  Identities=13%  Similarity=0.133  Sum_probs=118.3

Q ss_pred             HHHHHHhhhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccc--hhhHHHH
Q 011112           33 VSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFF--RSSTWHL  110 (493)
Q Consensus        33 ~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~--~~~~~~l  110 (493)
                      ..+.+++++|+|.++++++.++.......+++.|+++||+     ++|+.++++.+++.++.++++++.+.  ..+++.+
T Consensus        49 ~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~-----G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l  123 (591)
T PTZ00207         49 ISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYL-----GPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRL  123 (591)
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHH
Confidence            3455688999999999998776332222477889999995     68889999999999999888876211  1357788


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHH-HHHHHHHhhccccHHHHHHHHHHHHHHH
Q 011112          111 IVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGIC-GSLLGGYALTNIEIDRIFLLFTVLPAIQ  189 (493)
Q Consensus       111 ~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~l-g~~i~g~l~~~~gw~~~f~~~~~~~~l~  189 (493)
                      .+.|++.|+|.+..++.....+.+.++    ++||++.|+......+|.++ +++..+++.  .+|++.|++.++++++.
T Consensus       124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp----~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        124 SVYNGLMTLGCMLFDLGAVVTVLSVFP----SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVV  197 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHH
Confidence            899999999998888887777777662    78999999999999999985 555555554  36888898888888777


Q ss_pred             HHHh-hcccc
Q 011112          190 LLSC-GLVKE  198 (493)
Q Consensus       190 ~i~~-~~~~e  198 (493)
                      .+.+ .++++
T Consensus       198 ~ll~~~~vr~  207 (591)
T PTZ00207        198 GILAIVFMRL  207 (591)
T ss_pred             HHHHHhheeC
Confidence            6544 34443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.37  E-value=5.2e-10  Score=115.83  Aligned_cols=313  Identities=17%  Similarity=0.161  Sum_probs=188.1

Q ss_pred             hHhhhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHh--hhhhHHHHHHHHHHHH
Q 011112           58 PWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNL--GSAMADVVVDAMIAEA  135 (493)
Q Consensus        58 ~~~~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~--~~~~~~~~~~ali~~~  135 (493)
                      +....|+.|.++||+     +||..+.+....+.+..+.+.+..     + ++++   +.++  +.+.......++++|.
T Consensus        75 ~~i~s~~iG~lSD~~-----grk~~L~~~~~~~~l~~~~~~~~~-----~-~~~~---~~~l~g~~~~~~s~~~a~vadi  140 (463)
T KOG2816|consen   75 TLISSPLIGALSDRY-----GRKVVLLLPLFGTILPALCLLFQG-----Y-WFFL---LLGLSGGFSAIFSVGFAYVADI  140 (463)
T ss_pred             HHHHHhhhHHhhhhh-----hhhhhHHHHHHHHHHhHHHHHHHH-----H-HHhh---hcccccchhhhhhhhhhheeec
Confidence            344489999999994     788888888888887777665542     2 2222   3222  2223344567788888


Q ss_pred             hhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCC
Q 011112          136 AKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNG  214 (493)
Q Consensus       136 ~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~  214 (493)
                      .++   ++|....|+.......+..++|.+++.+....|.-.+|++..+..++..+.. +++||+..+.+.++.     +
T Consensus       141 s~~---~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~-----~  212 (463)
T KOG2816|consen  141 SSE---EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDA-----T  212 (463)
T ss_pred             cch---hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccc-----c
Confidence            854   7999999999999999999999999999999999999999887776666543 568887654321100     0


Q ss_pred             CcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchH
Q 011112          215 YHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEIL  294 (493)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  294 (493)
                      .+         ..+++..           .+       .                      +..+..+.....=++|..+
T Consensus       213 ~~---------~~~~~~~-----------~~-------~----------------------~~~~~~~~~~~~~~~r~~l  243 (463)
T KOG2816|consen  213 LR---------ELTPGSL-----------DS-------S----------------------HVADAFQSLTKVGPDRLLL  243 (463)
T ss_pred             cc---------ccCCCcc-----------cc-------h----------------------hhhhhhhhhcccCCCccch
Confidence            00         0000000           00       0                      1111111221111223333


Q ss_pred             HHHHHHHHHH-hcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCChhHHHHHHHHHHHHHhh
Q 011112          295 RPMAWFFLAH-VAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYT-YNGYLKRLKLRRILLLTQVGLSILSF  372 (493)
Q Consensus       295 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~-~~~~~~~~~~r~~l~~~~~~~~~~~l  372 (493)
                      ...+..++.. ..........++|+...+|+++.+.+...........++..+ ...+.+.++.++.+..+.....+..+
T Consensus       244 ~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~  323 (463)
T KOG2816|consen  244 LLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLL  323 (463)
T ss_pred             HHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHH
Confidence            3333333222 222223324567777779999999997644444444454444 34666777888876666666555422


Q ss_pred             hhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHh
Q 011112          373 LDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASS  452 (493)
Q Consensus       373 ~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~  452 (493)
                      . ..+.  +      ....++.  .....+..........+.++...+++++|+.+++.+.+..+...++|.+-+.+...
T Consensus       324 ~-~af~--~------~~w~~~~--~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  324 L-FAFA--T------ETWMMFA--AGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             H-HHHh--c------cchhhhH--HHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            2 1111  1      1111111  11122222223333457899999999999999999999999999998887777654

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.36  E-value=6.7e-14  Score=148.03  Aligned_cols=392  Identities=17%  Similarity=0.174  Sum_probs=2.7

Q ss_pred             HHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHH
Q 011112           13 LWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLS   90 (493)
Q Consensus        13 ~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~   90 (493)
                      +..+++..++|+..+ .....+.. ++++|+++.++.|++.+.+-++..+ ..+.+++.+|     .+|-+|+-.|.++.
T Consensus         5 l~~~~~~~~~q~~~~g~~~~~ltt-iErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-----~hrprwig~g~~~~   78 (539)
T PF03137_consen    5 LVFLCLLGLFQMMVSGYVNSSLTT-IERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-----GHRPRWIGIGALLM   78 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----cCCcceeeecHHHH
Confidence            344555667785543 66566554 5888999999999999999888776 6778888887     47778888999998


Q ss_pred             HHHHHHHhhccc-------------------------------------------c---hhhHHHHHHHHHHHHhhhhhH
Q 011112           91 LVPWLILGLNAF-------------------------------------------F---RSSTWHLIVLLTAQNLGSAMA  124 (493)
Q Consensus        91 ~~~~~~~~~~~~-------------------------------------------~---~~~~~~l~~~~~l~~~~~~~~  124 (493)
                      .++.+++++.+-                                           .   ...+..+++..++.|+|.+..
T Consensus        79 ~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl  158 (539)
T PF03137_consen   79 GLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPL  158 (539)
T ss_dssp             -------------------------------------------------------------------------SSS----
T ss_pred             HHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCC
Confidence            888888765430                                           0   012334556667788999999


Q ss_pred             HHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------c-HHHHHHHH
Q 011112          125 DVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI---------------------E-IDRIFLLF  182 (493)
Q Consensus       125 ~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~---------------------g-w~~~f~~~  182 (493)
                      .+...+++-|-++   +++.+...|+......+|+++|-++|+.+.+.+                     | |-.-|++.
T Consensus       159 ~tLG~tYiDDnv~---~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~  235 (539)
T PF03137_consen  159 YTLGITYIDDNVS---KKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLIC  235 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccceeeeeccccc---cccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHH
Confidence            9999999988874   477888899999999999999999999776421                     1 44556666


Q ss_pred             HHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccC
Q 011112          183 TVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQI  262 (493)
Q Consensus       183 ~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (493)
                      +.+.++..+..++.|++-+......+....++ ++.++     .++.... ++      ...+                 
T Consensus       236 g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~-~~~~~-----~~~~~~~-~~------~~~~-----------------  285 (539)
T PF03137_consen  236 GILLFLSAIPLFFFPKKLPGTSERQEEKESSE-RKEED-----SDKDSFK-DP------KSKK-----------------  285 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCccCCCcccccchhhhhh-cchhh-----hhhhccc-cc------cccc-----------------
Confidence            65554444545555643222200000000000 00000     0000000 00      0000                 


Q ss_pred             CCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHH-HHHHHHHHH
Q 011112          263 PEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTA-RVVGWVGLM  341 (493)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~-~~~~~~~~~  341 (493)
                               ...+..|+..+.++++++||.+....+-.........+..+-.+.|++.+++.++.++.++ ..+...+.+
T Consensus       286 ---------~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~  356 (539)
T PF03137_consen  286 ---------SFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAA  356 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------chhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhh
Confidence                     0111456666778899999987665544333334444555556788888899999888776 444555667


Q ss_pred             HHHHHHHHHHhcCC--hhHHHHHHHHHHHHHhhh-h-hhheecccc----------------------------------
Q 011112          342 LGTYTYNGYLKRLK--LRRILLLTQVGLSILSFL-D-IVLVSRMNL----------------------------------  383 (493)
Q Consensus       342 l~~~~~~~~~~~~~--~r~~l~~~~~~~~~~~l~-~-~~~~~~~~~----------------------------------  383 (493)
                      +|.+++|.+.+|++  .|+......++..++.+. . ..+..-.+.                                  
T Consensus       357 ~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~  436 (539)
T PF03137_consen  357 LGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNG  436 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcc
Confidence            77777787777653  455444444443332211 0 001100000                                  


Q ss_pred             --ccCcc--C--ceEe--eehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhh-hhhhhHhHHHHhHHh
Q 011112          384 --TVGIS--D--KTMV--LYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNF-GSTVGSFFGAGLASS  452 (493)
Q Consensus       384 --~~g~~--~--~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~l-g~~~~~~i~g~l~~~  452 (493)
                        ..|..  .  ..++  ++...+..+......+|.+....|.+|+++|+.+.|+...+.++ |..-||.+-|.+.|.
T Consensus       437 ~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  437 SATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             cccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence              00110  0  0011  11112222333445667666788999999999999999988774 667789999988885

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.29  E-value=1.5e-10  Score=119.90  Aligned_cols=179  Identities=11%  Similarity=0.075  Sum_probs=125.0

Q ss_pred             HHHHHHHHhHH-HhHHHHHHHHHHhhhCCCH--------hhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112           16 ICLIYFTQGFR-SFVWTAVSYQLKDKLKFSP--------SASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus        16 ~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~--------~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      +...+++.+.. .......+++++ +.|.++        ++.+...++..+...+ +++.|.++||+     +||+.++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-----g~r~~l~~  286 (418)
T TIGR00889       213 FFFFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-----GIKKVMLL  286 (418)
T ss_pred             HHHHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHH
Confidence            44444443332 344444556655 466554        4557766666665554 78899999995     67788888


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHH-HHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSW-LAMAFGGICGSL  164 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~-~~~~~G~~lg~~  164 (493)
                      +.++..++...+..........+.+++..++.+++.+...+....++.|..   |+++|++.+|+.+ ....+|..+||.
T Consensus       287 ~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~---p~~~~g~~~g~~~~~~~~lg~~iGp~  363 (418)
T TIGR00889       287 SLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEV---PVHIRASAQGLFTLMCNGFGSLLGYI  363 (418)
T ss_pred             HHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            888777776555553211112345566778888888887777788888887   4589999999997 567899999999


Q ss_pred             HHHHhhcc------ccHHHHHHHHHHHHHHHHHH-hhccccccccc
Q 011112          165 LGGYALTN------IEIDRIFLLFTVLPAIQLLS-CGLVKENRVST  203 (493)
Q Consensus       165 i~g~l~~~------~gw~~~f~~~~~~~~l~~i~-~~~~~e~~~~~  203 (493)
                      ++|++.++      +||+.+|++.+++.++..+. .+++||+.+..
T Consensus       364 l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       364 LSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             HHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            99999987      46999999888777766654 35677765443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.28  E-value=6.7e-11  Score=121.17  Aligned_cols=189  Identities=17%  Similarity=0.129  Sum_probs=136.0

Q ss_pred             hhchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHh-hhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112            7 VFGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKD-KLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~-~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      ..+|+-.++..+..|+.+.. ++.....-||+++ |.+.+.+..|++++...++..+ .|.+|+.+.|.   ++-|||+ 
T Consensus        30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~---~~~k~Pl-  105 (488)
T KOG2325|consen   30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT---GSVKKPL-  105 (488)
T ss_pred             CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc---CCcccCH-
Confidence            36788888788888998886 4555666678765 5788889999999999999887 89999999985   2335555 


Q ss_pred             HHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILG-LNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICG  162 (493)
Q Consensus        84 i~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg  162 (493)
                      +.+.++.+++.++.. +.......-+.++++|++.|+|.+... .-.+++++...   +++|.|+++....+..+|.++|
T Consensus       106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~---~~dR~rA~a~~~~~~vlg~ilG  181 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADAST---VEDRPRAFAATSGGFVLGIILG  181 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhccC---ccchHHHHHHhhhHHHHHHHHh
Confidence            577777888877763 322222256678899999999976654 46777777653   4788899999888888888888


Q ss_pred             HHHHHHhhc-------cc------cHHHHHHHHHHHHHHHHHH-hhccccccccc
Q 011112          163 SLLGGYALT-------NI------EIDRIFLLFTVLPAIQLLS-CGLVKENRVST  203 (493)
Q Consensus       163 ~~i~g~l~~-------~~------gw~~~f~~~~~~~~l~~i~-~~~~~e~~~~~  203 (493)
                      |.++..+..       +.      -+..+-|+++++.++..+. .++++|..+..
T Consensus       182 p~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  182 PTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             HHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            888765543       11      1456667777766666643 35678876554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.28  E-value=3.5e-10  Score=116.07  Aligned_cols=157  Identities=11%  Similarity=0.039  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhH
Q 011112           29 VWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSST  107 (493)
Q Consensus        29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~  107 (493)
                      .....+.++++++|.++.+.+...+.......+ .+++|+++||+     +||+.+..+.....+....+...+    +.
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~----~~  305 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-----GKRFLMRVAAVAGVCFYAGMLMAH----SP  305 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHHHHHHHHHHHHHHHHHHh----hH
Confidence            334567788888999999999877665554444 68999999995     455566555554444433333322    34


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Q 011112          108 WHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPA  187 (493)
Q Consensus       108 ~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~  187 (493)
                      +..++.+++.+++.+...........|..+    ++||+++++++...++|..+|+.++|.+.++.+|+.+|++.+++.+
T Consensus       306 ~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p----~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~  381 (393)
T PRK15011        306 AILLGLQLLNAIYIGILGGIGMLYFQDLMP----GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMII  381 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            455667777776666655555566666653    5699999999999999999999999999999999999998777766


Q ss_pred             HHHHHhhcccc
Q 011112          188 IQLLSCGLVKE  198 (493)
Q Consensus       188 l~~i~~~~~~e  198 (493)
                      +..+..++.||
T Consensus       382 ~~~~~~~~~~~  392 (393)
T PRK15011        382 ATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHhhcC
Confidence            66666666664

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.27  E-value=3.7e-10  Score=114.55  Aligned_cols=157  Identities=13%  Similarity=0.121  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhH
Q 011112           29 VWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSST  107 (493)
Q Consensus        29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~  107 (493)
                      .....+.++++++|.++.+.+...+........ .++.|+++||+     +||+.+..+.+...+........+    +.
T Consensus       218 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~----~~  288 (375)
T TIGR00899       218 YIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-----GKRRLMLLAALAGVAFYTGLAADN----SL  288 (375)
T ss_pred             HHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHHH----HH
Confidence            344556777788999999998876655443333 67899999995     456666666555444443333322    34


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Q 011112          108 WHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPA  187 (493)
Q Consensus       108 ~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~  187 (493)
                      +...+.+++.+++.+...+.....+.|..+    ++++++++++....++|..+|+.++|.+.++.||+..|++.+++.+
T Consensus       289 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~  364 (375)
T TIGR00899       289 WALLMLQLLNAIFIGILAGIGMLYFQDLMP----GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLI  364 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            455667777788777777677777777653    4567999999999999999999999999999999999998887766


Q ss_pred             HHHHHhhcccc
Q 011112          188 IQLLSCGLVKE  198 (493)
Q Consensus       188 l~~i~~~~~~e  198 (493)
                      +..+..+++||
T Consensus       365 ~~~~~~~~~~~  375 (375)
T TIGR00899       365 VALFCLLLIKD  375 (375)
T ss_pred             HHHHHHheecC
Confidence            66655555554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.25  E-value=6.9e-10  Score=114.78  Aligned_cols=161  Identities=12%  Similarity=0.003  Sum_probs=118.4

Q ss_pred             HHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHH
Q 011112           30 WTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTW  108 (493)
Q Consensus        30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~  108 (493)
                      ....+.++++.+|.++.+.|++.+...++..+ .++.|++.||     .++++.+..+.....++...+...+    +.+
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~----~~~  313 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-----ARPGLLMLLSTLGSFLAVGLFGLMP----MWI  313 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-----cCcchHHHHHHHHHHHHHHHHHccc----hHH
Confidence            34456677776999999999988887777666 6788999997     2445566666666666655555443    334


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Q 011112          109 HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAI  188 (493)
Q Consensus       109 ~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l  188 (493)
                      ...+..++.+++.+...+...+++.|..   |++.||++.|++.....+|..+|+.+.|++.+..|++..+++.+...++
T Consensus       314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~  390 (417)
T PRK10489        314 LAVLCLALFGYLSAISSLLQYTLLQTQT---PDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLI  390 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence            4556666777777776666677777777   4588999999999999999999999999999999999888887766555


Q ss_pred             HHH-Hhhcccccccc
Q 011112          189 QLL-SCGLVKENRVS  202 (493)
Q Consensus       189 ~~i-~~~~~~e~~~~  202 (493)
                      ..+ ....+||.++.
T Consensus       391 ~~~~~~~~~~~~~~~  405 (417)
T PRK10489        391 IGVLLLLVLGELRRF  405 (417)
T ss_pred             HHHHHHHhccccccc
Confidence            544 34556765543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.23  E-value=5.2e-10  Score=117.55  Aligned_cols=177  Identities=12%  Similarity=0.048  Sum_probs=113.6

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++.+..|.+.+.+++..... .....+|.|+++++|.|..+.+...++..++..+ ++++|+++||+     +||+.++.
T Consensus       255 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-----g~r~~~~~  329 (467)
T PRK09556        255 LKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-----NGRRALVA  329 (467)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCchHHH
Confidence            45556666666666544432 3455677888888999999999888877777766 78999999996     23333333


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHH-HHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAF-GGICGSL  164 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~-G~~lg~~  164 (493)
                      ...+..++...+.....  ++.....+.+++.+++.............|..   |+++||.+.|+.+...++ |..++|.
T Consensus       330 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~---p~~~~g~a~gi~~~~g~l~g~~~~~~  404 (467)
T PRK09556        330 CIALALIIFTLGVYQHA--TSEYMYLASLFALGFLVFGPQLLIGVAAVGFV---PKKAIGVANGIKGTFAYLFGDSFAKV  404 (467)
T ss_pred             HHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHhHHHHhh
Confidence            32222222221222111  13334445555555432222222234555776   568999999999999886 7799999


Q ss_pred             HHHHhhc------------cccHHHHHHHHHHHHHHHHHHhh
Q 011112          165 LGGYALT------------NIEIDRIFLLFTVLPAIQLLSCG  194 (493)
Q Consensus       165 i~g~l~~------------~~gw~~~f~~~~~~~~l~~i~~~  194 (493)
                      +.|++.+            ..+|+..|++.++..++..+..+
T Consensus       405 ~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        405 GLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             hHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            9999999            67899999887666555544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.23  E-value=2e-10  Score=120.21  Aligned_cols=174  Identities=10%  Similarity=0.001  Sum_probs=119.3

Q ss_pred             chhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +.+.++......++..+.. .....+++|++ ++|.+..+.+...++..+...+ +|+.|+++||... +.+|+..+..+
T Consensus       239 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~  316 (455)
T TIGR00892       239 THRGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWI-RPHVQYLFSFA  316 (455)
T ss_pred             cCchHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CHHHHHHHHHH
Confidence            3444443434344433332 33445667765 5899999999988887776665 7999999997321 11222222233


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      .+...++.+.+...+    +.+.+++.+++.+++.+...+...+++.|..+   ++++++.+|++.....+|..+||.++
T Consensus       317 ~~~~~l~~ll~~~~~----~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~~~lg~~igp~i~  389 (455)
T TIGR00892       317 LLFNGLTHLLCALAG----DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVG---AQRFSSAVGLVTIVECCAVLIGPPLA  389 (455)
T ss_pred             HHHHHHHHHHHHHhc----hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhh---HHHHhhHHhHHHHHHHHHHHccccce
Confidence            333333333333332    45566777888888888888888888888874   58899999999999999999999999


Q ss_pred             HHhhccc-cHHHHHHHHHHHHHHHHH
Q 011112          167 GYALTNI-EIDRIFLLFTVLPAIQLL  191 (493)
Q Consensus       167 g~l~~~~-gw~~~f~~~~~~~~l~~i  191 (493)
                      |.+.++. +|++.|++.+++.++..+
T Consensus       390 G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       390 GRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             eeeehhcCCcchHHHHhhHHHHHHHH
Confidence            9999877 599999998876555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.22  E-value=4.3e-10  Score=113.58  Aligned_cols=170  Identities=16%  Similarity=0.187  Sum_probs=120.2

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++.+..+.+...++...+.. ......+++. +++|.++++.+...++..+...+ ++++|+++||+     +||+.+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~  275 (377)
T TIGR00890       202 LRTPQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-----GRQKTMSI  275 (377)
T ss_pred             HcCccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhH
Confidence            44445554544455544432 2333345554 56899998888888777777666 78999999995     56667777


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +.+...++.+.+...++.  ....++...++.+++.+...+...+++.|..   |+++|+++.|+......+|..+++.+
T Consensus       276 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~g~~~~~~~  350 (377)
T TIGR00890       276 VFGISAVGMAAMLFIPML--NDVLFLATVALVFFTWGGTISLFPSLVSDIF---GPANSAANYGFLYTAKAVAGIFGGLI  350 (377)
T ss_pred             HHHHHHHHHHHHHHcccc--hhHHHHHHHHHHHHHhccchhccHHHHHHHh---hhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence            777777776666555421  1222334455666666666666677888887   45899999999999999999999999


Q ss_pred             HHHhhccccHHHHHHHHHHHHHH
Q 011112          166 GGYALTNIEIDRIFLLFTVLPAI  188 (493)
Q Consensus       166 ~g~l~~~~gw~~~f~~~~~~~~l  188 (493)
                      .|.+.++.||++.|.+.+++.++
T Consensus       351 ~g~l~~~~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       351 ASHALTEIGFEYTFIVTGAFALT  373 (377)
T ss_pred             HHHHHhhhchhhHHHHHHHHHHH
Confidence            99999999999999987765443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.21  E-value=1.4e-09  Score=114.97  Aligned_cols=166  Identities=13%  Similarity=0.119  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHH-Hhhcccchh
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLI-LGLNAFFRS  105 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~-~~~~~~~~~  105 (493)
                      .....+++++++++|.+..+.+...+...++..+ .++.|+++||+     +||+.++.+.+...+.... +.....  .
T Consensus       268 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~--~  340 (490)
T PRK10642        268 MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-----GRRPFVILGSVALFVLAIPAFILINS--N  340 (490)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHhC--C
Confidence            4556778888888899988777666666666655 68899999995     5666666665433322222 222111  1


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHH
Q 011112          106 STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI-EIDRIFLLFTV  184 (493)
Q Consensus       106 ~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~-gw~~~f~~~~~  184 (493)
                      +...+++.+++.+++.+.......+++.|+.   |++.||+..|..+....+++.++|.+.+++.+.. +|+.+++...+
T Consensus       341 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~---p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~  417 (490)
T PRK10642        341 VIGLIFAGLLMLAVILNCFTGVMASTLPAMF---PTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMV  417 (490)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence            3445566777777665555555667777877   5689999999755556666778999999988754 47777766666


Q ss_pred             HHHHHHHHhhccccccccc
Q 011112          185 LPAIQLLSCGLVKENRVST  203 (493)
Q Consensus       185 ~~~l~~i~~~~~~e~~~~~  203 (493)
                      .+++..+..+++||++++.
T Consensus       418 ~~~i~~~~~~~~pes~~~~  436 (490)
T PRK10642        418 VAVIGLITGVTMKETANRP  436 (490)
T ss_pred             HHHHHHHHHHHhccccCCC
Confidence            6555555566779987654

>PRK03545 putative arabinose transporter; Provisional

Probab=99.20  E-value=1.5e-09  Score=111.23  Aligned_cols=175  Identities=18%  Similarity=0.101  Sum_probs=116.4

Q ss_pred             hhhchhHHHHHHHHHHHHhH-HHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112            6 NVFGVSFLWLICLIYFTQGF-RSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus         6 ~~~~~~~~~~~~~~~f~~g~-~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      +.++.+..+......+.... .......++++++++.|.|..+.+...+...++..+ +++.|+++||.     +||..+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----~~~~~~  274 (390)
T PRK03545        200 LLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-----PSGFLL  274 (390)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-----chhHHH
Confidence            34444444433333333222 222344566787887899999999887777766655 78899999984     344443


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGS  163 (493)
Q Consensus        84 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~  163 (493)
                       .+..+..++........   .+.+.+.++.++.+++.+...+..++.+.+..    +++|++++|++.....+|..+|+
T Consensus       275 -~~~~~~~~~~~~l~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~g~~~G~  346 (390)
T PRK03545        275 -IAIALLLVCLLLLLPAA---NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLA----PDATDVAMALFSGIFNIGIGAGA  346 (390)
T ss_pred             -HHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHhcchHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHH
Confidence             34333333333222221   13445556666777776665555666665554    36889999999999999999999


Q ss_pred             HHHHHhhccccHHHHHHHHHHHHHHHHHHh
Q 011112          164 LLGGYALTNIEIDRIFLLFTVLPAIQLLSC  193 (493)
Q Consensus       164 ~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~  193 (493)
                      +++|++.++.|++..|+..+++.++.++..
T Consensus       347 ~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        347 LLGNQVSLHLGLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887776655443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.20  E-value=9.3e-10  Score=109.77  Aligned_cols=167  Identities=24%  Similarity=0.273  Sum_probs=131.7

Q ss_pred             HHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchh-HHHHHHHHHHH
Q 011112           16 ICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIP-YLVISTVLSLV   92 (493)
Q Consensus        16 ~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~-~ii~~~~l~~~   92 (493)
                      .....+..... .......+.+.++.+|.+..+.+...+...+...+ .+++|+++||+     +||+ .+..+..+..+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i  254 (352)
T cd06174         180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-----GRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHH
Confidence            33334444433 34455666777776699999999988888877776 78999999995     4555 77788888888


Q ss_pred             HHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011112           93 PWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN  172 (493)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~  172 (493)
                      +...+...+    +.+...+..++.+++.+...+...+++.|..+   +++|++.+|.......+|..+++.+.|.+.+.
T Consensus       255 ~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~  327 (352)
T cd06174         255 GLLLLALAP----SLALLLVALLLLGFGLGFAFPALLTLASELAP---PEARGTASGLFNTFGSLGGALGPLLAGLLLDT  327 (352)
T ss_pred             HHHHHHHhc----cHHHHHHHHHHHHHHHhccchhHHHHHHhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            777776654    35566778888899999988899999999884   58999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhh
Q 011112          173 IEIDRIFLLFTVLPAIQLLSCG  194 (493)
Q Consensus       173 ~gw~~~f~~~~~~~~l~~i~~~  194 (493)
                      .+|++.+++.+++.++..+..+
T Consensus       328 ~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         328 GGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             cCcchHHHHHHHHHHHHHHHhe
Confidence            9999999998877766655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.18  E-value=2.5e-09  Score=107.04  Aligned_cols=367  Identities=14%  Similarity=0.085  Sum_probs=192.7

Q ss_pred             hhhhchhHHHHHHH--HHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchh
Q 011112            5 KNVFGVSFLWLICL--IYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIP   81 (493)
Q Consensus         5 ~~~~~~~~~~~~~~--~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~   81 (493)
                      +|.|..|++.++..  ..+.+++.=+.+.++..+.++.+| +...+-|..-++++.+.. ....-|+.|+.     +-|.
T Consensus        37 ~rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-----GLR~  110 (480)
T KOG2563|consen   37 HRVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-----GLRT  110 (480)
T ss_pred             cccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-----chHH
Confidence            35676666663322  224444443555666677788888 666667766677766654 77888999984     5667


Q ss_pred             HHHHHHHHHHHHHHHHhhcccc--hhhHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHH
Q 011112           82 YLVISTVLSLVPWLILGLNAFF--RSSTW--HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAF  157 (493)
Q Consensus        82 ~ii~~~~l~~~~~~~~~~~~~~--~~~~~--~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~  157 (493)
                      ..+++..+.+++..+=..+...  ++.++  .....-.+.+....+......-+ ++.  +++++||..+..+-..+..+
T Consensus       111 a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPski-A~~--WF~~~qra~A~~~~v~~n~L  187 (480)
T KOG2563|consen  111 ALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKI-AAV--WFPPDQRAIATVLGVMGNPL  187 (480)
T ss_pred             HHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHH-HHh--hCCcchhhhhhhHHHhcchH
Confidence            7778888888877654443211  12332  12222222222222222222222 222  34679999999888777778


Q ss_pred             HHHHHHHHHHHhhcc------ccHHH--HHHHHHHHHHHHHHHhh-ccccccccchhhhcccccCCCcccCCCCcccCCC
Q 011112          158 GGICGSLLGGYALTN------IEIDR--IFLLFTVLPAIQLLSCG-LVKENRVSTKVLKEFSSSNGYHQVNGNESILDDE  228 (493)
Q Consensus       158 G~~lg~~i~g~l~~~------~gw~~--~f~~~~~~~~l~~i~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (493)
                      |.++|.++.-.+..+      ..|..  .|+....+..+.++... ..+|+|+.+...                      
T Consensus       188 Gvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~----------------------  245 (480)
T KOG2563|consen  188 GVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSA----------------------  245 (480)
T ss_pred             HHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch----------------------
Confidence            888888887777653      34654  35544444444333332 234433222000                      


Q ss_pred             CCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhccc
Q 011112          229 DGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVP  308 (493)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~  308 (493)
                                  ..+++    ++ .                      +   ..+.+.+.++|+++...+....+....+.
T Consensus       246 ------------s~~~~----~~-~----------------------~---f~~si~~~~~n~~F~il~~~ygi~~g~F~  283 (480)
T KOG2563|consen  246 ------------SQAAL----QD-A----------------------S---FPKSIKSCFKNRQFIILAICYGIGLGLFN  283 (480)
T ss_pred             ------------hHhhh----hc-C----------------------c---HHHHHHHHHcCccHHHHHHHHhhhHHHHH
Confidence                        00000    00 0                      1   23356677899987655433322222222


Q ss_pred             CCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH-HHHHHHHHHhhhhhhheeccccccCc
Q 011112          309 NLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILL-LTQVGLSILSFLDIVLVSRMNLTVGI  387 (493)
Q Consensus       309 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~-~~~~~~~~~~l~~~~~~~~~~~~~g~  387 (493)
                      ...+.+-.- ...-|++....|...+...++.++++.+.+.+.||++.-+... +......+..+..... ..      .
T Consensus       284 ~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~-t~------~  355 (480)
T KOG2563|consen  284 SLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTC-TL------F  355 (480)
T ss_pred             HHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh-hc------c
Confidence            111111101 1224666667888888888899999999999999886544433 3333222221111111 00      0


Q ss_pred             cCceEeeehh-HHHHHHHHhhHhHH-HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhh
Q 011112          388 SDKTMVLYGS-ALVDAVNQFKFMPF-LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSL  453 (493)
Q Consensus       388 ~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~  453 (493)
                      +....++... ....++ +....|. .-+..|..-|..+++..|+.+..+++-+.+=.++-+...+..
T Consensus       356 ~~~~viv~~t~~~~g~~-~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~  422 (480)
T KOG2563|consen  356 LGDSVIVFTTCGLLGFF-GTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDL  422 (480)
T ss_pred             CCceEehhhhHHHHHHh-hcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhcc
Confidence            1111122111 111111 2234554 356778888899999998887776655544444444444433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.16  E-value=3.5e-10  Score=97.04  Aligned_cols=125  Identities=26%  Similarity=0.352  Sum_probs=100.6

Q ss_pred             hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhch
Q 011112           62 KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERA  141 (493)
Q Consensus        62 ~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~  141 (493)
                      +++.|+++||+     +||+.+..+.....++.+.+...+    +.+...+.+++.+++.+...+..++++.|..+   +
T Consensus        15 ~~~~g~~~d~~-----g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~   82 (141)
T TIGR00880        15 SPLSGLLTDRF-----GRKPVLLVGLFIFVLSTAMFALSS----NITVLIIARFLQGFGAAFALVAGAALIADIYP---P   82 (141)
T ss_pred             HhhHHHHHhhc-----chhHHHHHHHHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC---h
Confidence            78899999995     566677777777777766665543    45667788889999998888889999999884   4


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhh-cccc
Q 011112          142 AFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCG-LVKE  198 (493)
Q Consensus       142 ~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~-~~~e  198 (493)
                      ++|++..+.......+|..+++.+++.+.+..+|++.+++.+++.++..+... +.||
T Consensus        83 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            88999999999999999999999999999999999999988776665554443 3454

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.16  E-value=1.9e-09  Score=112.18  Aligned_cols=177  Identities=15%  Similarity=0.065  Sum_probs=107.8

Q ss_pred             hHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHH
Q 011112           11 SFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTV   88 (493)
Q Consensus        11 ~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~   88 (493)
                      +.++.+...++...+. ......+++++++++|.|..+.+...+++.++..+ .+++|+++||+.  +++||+......+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~--~~~r~~~~~~~~~  320 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLF--NGNRGPMNLIFAA  320 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhc--cCCccHHHHHHHH
Confidence            3445444445444433 23445667788788999999999888888777766 689999999962  1123332222111


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011112           89 LSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGY  168 (493)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~  168 (493)
                      ...+....+...+..  +........+..+++...........+.|..   |+++||++.|+.+....+|..++|.+.|+
T Consensus       321 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~g~~~~p~~~g~  395 (434)
T PRK11663        321 GILLSVGSLWLMPFA--SYVMQAACFFTIGFFVFGPQMLIGMAAAECS---HKEAAGAATGFVGLFAYLGAALSGYPLAK  395 (434)
T ss_pred             HHHHHHHHHHHcccc--cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcc---cHhhHHhHHHHHHHHHHHHHHHhcccHHH
Confidence            111111111112211  1222223333333322111112223445555   46899999999999999999999999999


Q ss_pred             hhccccHHHHHHHHHHHHHHHHHHhh
Q 011112          169 ALTNIEIDRIFLLFTVLPAIQLLSCG  194 (493)
Q Consensus       169 l~~~~gw~~~f~~~~~~~~l~~i~~~  194 (493)
                      +.++.||+..|+..+++.++..+.++
T Consensus       396 l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        396 VLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988877666655444

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.15  E-value=4.6e-10  Score=119.60  Aligned_cols=307  Identities=16%  Similarity=0.161  Sum_probs=200.3

Q ss_pred             hhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHH
Q 011112           10 VSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIST   87 (493)
Q Consensus        10 ~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~   87 (493)
                      +-++.++...++.|++.+ .....+. .++++|+++.++.|++.+.+-++..+ ..++.++.-|     .+|-+++-.|.
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~It-tiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-----~HrPr~Ig~G~  169 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVIT-TIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-----GHRPRWIGIGL  169 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhh-hhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-----cCccceeeech
Confidence            334445666678899864 4444444 45888999999999988887777765 5677888877     47778888999


Q ss_pred             HHHHHHHHHHhhcc-------------------c--------------------------ch-hh-HH-HHHHHHHHHHh
Q 011112           88 VLSLVPWLILGLNA-------------------F--------------------------FR-SS-TW-HLIVLLTAQNL  119 (493)
Q Consensus        88 ~l~~~~~~~~~~~~-------------------~--------------------------~~-~~-~~-~l~~~~~l~~~  119 (493)
                      ++..++.+++++.+                   .                          .+ ++ .+ .+++..++.|+
T Consensus       170 ~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI  249 (735)
T KOG3626|consen  170 VLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI  249 (735)
T ss_pred             hHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc
Confidence            99999888887653                   0                          00 11 22 34456667788


Q ss_pred             hhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-------------------cHHHHHH
Q 011112          120 GSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI-------------------EIDRIFL  180 (493)
Q Consensus       120 ~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~-------------------gw~~~f~  180 (493)
                      |.....+....++-|-+++   ++.....|+.+....+|+++|-++|+++...+                   .|..-|+
T Consensus       250 G~Tpi~tlGisYiDDnvk~---~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL  326 (735)
T KOG3626|consen  250 GATPIFTLGISYIDDNVKK---KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL  326 (735)
T ss_pred             CCCCCccCCCccccccccc---cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence            8888888888888887753   67888899999999999999999999876421                   2666788


Q ss_pred             HHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhc
Q 011112          181 LFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKS  260 (493)
Q Consensus       181 ~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (493)
                      +.+.+.++..+..++.|++.++.+++.+   .++.+...      .+++.   ++      . ++       .       
T Consensus       327 i~g~~~~~~a~p~f~fPk~lp~~~~~~~---~~~~~~~k------~~~~~---~~------~-~~-------~-------  373 (735)
T KOG3626|consen  327 ICGALLLFSAVPLFFFPKELPKSQKRKR---ARDLHVLK------TESGG---AK------S-DK-------T-------  373 (735)
T ss_pred             HHHHHHHHHHHHHHhCcccCccccccch---hhhhcccc------ccccc---cc------C-Cc-------c-------
Confidence            8887776666777777765544321100   00000000      00000   00      0 00       0       


Q ss_pred             cCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHH-HHHHHHH
Q 011112          261 QIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTA-RVVGWVG  339 (493)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~-~~~~~~~  339 (493)
                                  +.+..|+..+.++++++||.....++...+....+.+..+-+|.|+..++|.++..+-++ ..++..+
T Consensus       374 ------------~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~  441 (735)
T KOG3626|consen  374 ------------FGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPA  441 (735)
T ss_pred             ------------hhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhh
Confidence                        111456666778899999987665544443334444455556788888899999888776 4556667


Q ss_pred             HHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHH
Q 011112          340 LMLGTYTYNGYLKRL--KLRRILLLTQVGLSIL  370 (493)
Q Consensus       340 ~~l~~~~~~~~~~~~--~~r~~l~~~~~~~~~~  370 (493)
                      ..+|..++|++.+|+  ..|....+..++..++
T Consensus       442 ~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~  474 (735)
T KOG3626|consen  442 AAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLS  474 (735)
T ss_pred             hhhhhhccceeeeeecccHHHHHHHHHHHHHHH
Confidence            778888888888876  4555555554444443

>TIGR00897 2A0118 polyol permease family

Probab=99.15  E-value=3.9e-09  Score=108.72  Aligned_cols=180  Identities=13%  Similarity=0.056  Sum_probs=115.6

Q ss_pred             hhchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            7 VFGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      .++.+..+...+.++++... .......|.+++ ++|.+..+.+...+...++..+ ++++|+++||+    .|||....
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~----~~~~~~~~  292 (402)
T TIGR00897       218 LFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL----GWMNTVRW  292 (402)
T ss_pred             HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchhHHHH
Confidence            34555566555666665443 233445566665 5899999988877777776666 78999999996    23443332


Q ss_pred             HHHHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAF-FRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGS  163 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~  163 (493)
                      .+.+...++...+...+. ...+.+...+..++.+++.+... +..+.+.|.    ++++||++.|+.+....+|..+||
T Consensus       293 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~----~~~~~g~~~g~~~~~~~lg~~~gp  367 (402)
T TIGR00897       293 FGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYV-PLAAVFPTL----APKHKGAAMSVLNLSAGLSAFLAP  367 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhh----CcchhHHHHHHHHHHHHHHHHHHH
Confidence            333323333222222111 01133344455556666655443 344555553    236899999999999999999999


Q ss_pred             HHHHHhhccccHHHHHHHHHHHHHHHHHHhhcc
Q 011112          164 LLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLV  196 (493)
Q Consensus       164 ~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~  196 (493)
                      .++|.+.+..||+.+|++.+++.++..+...|+
T Consensus       368 ~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       368 AIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999887766665544444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.14  E-value=1.1e-09  Score=113.51  Aligned_cols=157  Identities=11%  Similarity=0.087  Sum_probs=111.6

Q ss_pred             HHHHHHHhh---hCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhH
Q 011112           32 AVSYQLKDK---LKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSST  107 (493)
Q Consensus        32 ~~~~~l~~~---~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~  107 (493)
                      ..+.++.+.   .+.+..+.|.+.++..+...+ .+++|+++||+     +||+.+..+..+..+..+.+++.+    +.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~l~~~~~~l~~~~~----~~  315 (420)
T PRK09528        245 QFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-----GAKNALLLAGTIMAVRIIGSGFAT----GP  315 (420)
T ss_pred             HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcchhhHHHHHHHHHHHHHHHhcc----cH
Confidence            344554443   356667888888877777665 78999999995     455666676667677766666654    34


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Q 011112          108 WHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSL-SWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLP  186 (493)
Q Consensus       108 ~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~-~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~  186 (493)
                      +.++..+++.+++.+...+....++.|..   |++.|+...+. ++....+|.++|+.++|++.|..||+..|.+.+++.
T Consensus       316 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~  392 (420)
T PRK09528        316 LEVSILKLLHAFEVPFLLVGVFKYITLNF---DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIV  392 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHH
Confidence            55667788888877766666666766666   44777776655 567788999999999999999999999999888776


Q ss_pred             HHHHHHh-hcccccc
Q 011112          187 AIQLLSC-GLVKENR  200 (493)
Q Consensus       187 ~l~~i~~-~~~~e~~  200 (493)
                      ++..+.. +..++++
T Consensus       393 ~i~~~~~~~~~~~~~  407 (420)
T PRK09528        393 LLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHHHHhcCCc
Confidence            6555433 3445443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.14  E-value=4.7e-09  Score=107.34  Aligned_cols=173  Identities=14%  Similarity=0.084  Sum_probs=127.4

Q ss_pred             hhhhchhHHHHHHHHHHHHhH-HHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhH
Q 011112            5 KNVFGVSFLWLICLIYFTQGF-RSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPY   82 (493)
Q Consensus         5 ~~~~~~~~~~~~~~~~f~~g~-~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~   82 (493)
                      ++.++.+.++.....+++... ........++++++ +|.+++++|...++..+...+ .++.|.+.||+     ++|+.
T Consensus       199 ~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-----g~~~~  272 (382)
T TIGR00902       199 IALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-----SARDL  272 (382)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-----CHHHH
Confidence            344566666655555555333 33444566778765 999999999887776666655 67888999984     67778


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHH-HHHHHHHHH
Q 011112           83 LVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSW-LAMAFGGIC  161 (493)
Q Consensus        83 ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~-~~~~~G~~l  161 (493)
                      +..+.+...+....+++.+    +.+.++...++.++..+...+....++.+.    |+++|++.++++. ....+|..+
T Consensus       273 l~~~~~~~~~~~~~~~~~~----~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~----~~~~~~~~q~~~~~~~~g~g~~~  344 (382)
T TIGR00902       273 LLISAIACVGRWAIIGAIE----AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ----PGSEIAKLQALYNALAMGGLIAI  344 (382)
T ss_pred             HHHHHHHHHHHHHHHHhHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHhhHHHHHHHHHHHHHHHHHHH
Confidence            8889888888887777654    456677788899998888877766666553    4578899999986 467799999


Q ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 011112          162 GSLLGGYALTNIEIDRIFLLFTVLPAIQLLS  192 (493)
Q Consensus       162 g~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~  192 (493)
                      |+.++|++.|++|+ ..|++.+++.++.++.
T Consensus       345 g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       345 FTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            99999999999996 5677777666544433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.14  E-value=3.7e-09  Score=108.53  Aligned_cols=182  Identities=11%  Similarity=-0.048  Sum_probs=122.6

Q ss_pred             chhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +.+..+.+...+++..+.. ......++++++ +|.+..+.|...+++.+...+ ++++|++.||.     +||+.++.+
T Consensus       203 ~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-----~~~~~~~~~  276 (393)
T PRK09705        203 FTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-----DRRKLLMLA  276 (393)
T ss_pred             cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHH
Confidence            4455554555554444432 444566788775 899999999988888887776 78999999985     456666666


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      ..+..++..++...+.   +.....  ..+.+++.+...+...+...+..+  |+++||+..|+.+....++..+||.+.
T Consensus       277 ~~l~~~~~~~~~~~~~---~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~--~~~~~g~~~g~~~~~~~~~~~~gp~~~  349 (393)
T PRK09705        277 LVLQLVGFCGFIWLPL---QLPVLW--AMVCGLGLGGAFPLCLLLALDHSV--QPAIAGKLVAFMQGIGFIIAGLAPWFS  349 (393)
T ss_pred             HHHHHHHHHHHHHccc---hHHHHH--HHHHHHhccchHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666554443332   111111  223455555554555555555553  357899999999999999999999999


Q ss_pred             HHhhcccc-HHHHHHHHHHHHHHHHHH-hhccccccccc
Q 011112          167 GYALTNIE-IDRIFLLFTVLPAIQLLS-CGLVKENRVST  203 (493)
Q Consensus       167 g~l~~~~g-w~~~f~~~~~~~~l~~i~-~~~~~e~~~~~  203 (493)
                      |++.|+.| |+..|++.++..++..+. +.+.||++.++
T Consensus       350 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        350 GVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence            99999876 888888877666655543 35567776554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.13  E-value=4.2e-09  Score=110.25  Aligned_cols=186  Identities=17%  Similarity=0.109  Sum_probs=111.4

Q ss_pred             chhHHHHHHHHHHHHhH-HHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchh-HHHH
Q 011112            9 GVSFLWLICLIYFTQGF-RSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIP-YLVI   85 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~-~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~-~ii~   85 (493)
                      +.+.+|...+..++... .......+|.+++++.|.+..+.+....++.+...+ .++.|+++||+.   .+||+ ..+.
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~---~~r~~~~~~~  327 (452)
T PRK11273        251 PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF---RGNRGATGVF  327 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCcchHHHH
Confidence            34445544444444333 234456778888888899999888877777666665 789999999962   23332 2222


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHH-HHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGI-CGSL  164 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~-lg~~  164 (493)
                      ...+..++.+.+...+.  .+.+...+..+..+...........+++.|..   |+++||++.|+......+|.. +||.
T Consensus       328 ~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~g~~~~g~~  402 (452)
T PRK11273        328 FMTLVTIATIVYWLNPA--GNPTVDMACMIVIGFLIYGPVMLIGLHALELA---PKKAAGTAAGFTGLFGYLGGSVAASA  402 (452)
T ss_pred             HHHHHHHHHHHHHHhcc--cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHc---ChhhhhhHHHHHHHHHHHHHHHhhhh
Confidence            22222333222222211  12222233333333332222222334556666   558999999999988888765 4899


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHHHhh-c-ccccccc
Q 011112          165 LGGYALTNIEIDRIFLLFTVLPAIQLLSCG-L-VKENRVS  202 (493)
Q Consensus       165 i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~-~-~~e~~~~  202 (493)
                      ++|++.++.||+..|+++++..++..+... + .+|+|++
T Consensus       403 v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  442 (452)
T PRK11273        403 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHH  442 (452)
T ss_pred             hHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            999999999999999988876666554433 2 3454443

>PRK03699 putative transporter; Provisional

Probab=99.13  E-value=2.2e-09  Score=110.26  Aligned_cols=172  Identities=10%  Similarity=0.096  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHH
Q 011112           13 LWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLS   90 (493)
Q Consensus        13 ~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~   90 (493)
                      ++.+.+.+++..+. .......+.++++++|.|..+.+...+.+.+...+ .++.|+++||+     +||+.+.....+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----~~~~~l~~~~~~~  281 (394)
T PRK03699        207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-----DLQRILTVLAGLA  281 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-----chhhHHHHHHHHH
Confidence            34344445544433 34556778888888999999999988887777666 68899999996     4555555555554


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011112           91 LVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL  170 (493)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~  170 (493)
                      .+........+    +.+...+..++.+++.+...+...+...|..+    +++++..+.......+|..++|.+.|++.
T Consensus       282 ~~~~~~~~~~~----~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~g~~i~p~~~G~l~  353 (394)
T PRK03699        282 LVLMYLFVNTD----DPSHLLYAILGLGFFSSAIYTTIITLGSQQTK----VASPKLVNFILTCGTIGTMLTFVVTSPIV  353 (394)
T ss_pred             HHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44444443333    22233444556666665555555566555542    45677788888899999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccc
Q 011112          171 TNIEIDRIFLLFTVLPAIQLLSCGLVK  197 (493)
Q Consensus       171 ~~~gw~~~f~~~~~~~~l~~i~~~~~~  197 (493)
                      ++.||+..++..+++.++..+.+++.+
T Consensus       354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        354 AHFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence            999999999988877666655555444

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.13  E-value=2.9e-09  Score=107.92  Aligned_cols=177  Identities=20%  Similarity=0.212  Sum_probs=114.4

Q ss_pred             hchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++.+..+.....+++.... .......+.++++++|.+..+.+...+...+...+ .+++|+++||+.    |||+.+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~  287 (399)
T TIGR00893       212 LKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLL----RRGKSLVF  287 (399)
T ss_pred             hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh----hcccchhH
Confidence            4445555555556655554 35556677788888999999999888777766665 789999999962    33211111


Q ss_pred             HHHHHHHH---HHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVP---WLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICG  162 (493)
Q Consensus        86 ~~~l~~~~---~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg  162 (493)
                      ......++   ........+.....+..+....+..++.+ ..+...+++.|..   |+++|+++.|+......+|..++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~g~~~~  363 (399)
T TIGR00893       288 ARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNA---PGNIAGLTGGLINSLGNLGGIVG  363 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhc---ChhHHHHHHHHHHHHHHHhhhhh
Confidence            11111111   11111111111122233333334444444 5667788888887   45899999999999999999999


Q ss_pred             HHHHHHhhcccc-HHHHHHHHHHHHHHHHHH
Q 011112          163 SLLGGYALTNIE-IDRIFLLFTVLPAIQLLS  192 (493)
Q Consensus       163 ~~i~g~l~~~~g-w~~~f~~~~~~~~l~~i~  192 (493)
                      +.+.|++.++.| |++.|++.+++.++..+.
T Consensus       364 ~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       364 PIVIGAIAATTGSFAGALMVVAALALIGALS  394 (399)
T ss_pred             hHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence            999999999988 999998887666555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.12  E-value=4.8e-09  Score=107.69  Aligned_cols=155  Identities=12%  Similarity=0.131  Sum_probs=110.8

Q ss_pred             HHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 011112           31 TAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWH  109 (493)
Q Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~  109 (493)
                      ..++.++++ .|.+  +.+...+.+.+...+ +++.|++.||+     +||+.+..+..+..++...+...+    +.+.
T Consensus       237 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  304 (399)
T PRK05122        237 TFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-----GGLRVAIVSLLVEILGLLLLWLAP----SPWM  304 (399)
T ss_pred             HHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhc----cHHH
Confidence            444556554 5653  345555556666655 68899999995     456667677666666666555543    3345


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Q 011112          110 LIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQ  189 (493)
Q Consensus       110 l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~  189 (493)
                      .++.+++.+++.+...+.....+.|..   |+++||++.|+++....+|..+++.+.|++.++.||++.|++.+++.++.
T Consensus       305 ~~~~~~l~G~~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  381 (399)
T PRK05122        305 ALIGAALTGFGFSLVFPALGVEAVKRV---PPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLG  381 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            566777888888777666666666655   56899999999999999999999999999999999999999888776665


Q ss_pred             HHHhhcccccc
Q 011112          190 LLSCGLVKENR  200 (493)
Q Consensus       190 ~i~~~~~~e~~  200 (493)
                      .+..++.++++
T Consensus       382 ~~~~~~~~~~~  392 (399)
T PRK05122        382 LALTWLLYRRA  392 (399)
T ss_pred             HHHHHHhcccc
Confidence            55544455443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.12  E-value=1.7e-09  Score=109.82  Aligned_cols=163  Identities=22%  Similarity=0.158  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHH
Q 011112           13 LWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLS   90 (493)
Q Consensus        13 ~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~   90 (493)
                      ++.....++..... .......++++++++|.+..+.+...+...+...+ .+++|+++||+     +||+.++....+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~  295 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-----GRRPVLIIFTVLA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chHHHHHHHHHHH
Confidence            44344445554443 34555667788788999999988877777766665 78999999995     4555544333333


Q ss_pred             HH-HHHHH-hhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHH-HHHHHHHHHHHHHHHH
Q 011112           91 LV-PWLIL-GLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLS-WLAMAFGGICGSLLGG  167 (493)
Q Consensus        91 ~~-~~~~~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~-~~~~~~G~~lg~~i~g  167 (493)
                      .+ +.... .....  .+.+.......+.+++.+...++.++++.|..+   +++|+++.++. .....+|..++|.++|
T Consensus       296 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~g~~~~p~~~g  370 (394)
T TIGR00883       296 ALLAVPLLMALLDS--GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFP---TEVRYTGASLAYNLAGAIFGGFAPYIAA  370 (394)
T ss_pred             HHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCC---ccceeeEeeehhHhHHHHHhhHHHHHHH
Confidence            22 21222 22211  234445556667777777777888999999884   47899988874 4556789999999999


Q ss_pred             Hhhcccc-HHHHHHHHHHH
Q 011112          168 YALTNIE-IDRIFLLFTVL  185 (493)
Q Consensus       168 ~l~~~~g-w~~~f~~~~~~  185 (493)
                      ++.++.| |++.++.....
T Consensus       371 ~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       371 ALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             HHHHHcCcchhHHHHHHHH
Confidence            9999888 88877765543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.11  E-value=4.9e-09  Score=110.83  Aligned_cols=161  Identities=14%  Similarity=0.151  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHH-HHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHH---hhccc
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSA-VAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLIL---GLNAF  102 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s-~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~---~~~~~  102 (493)
                      ......++++.+++|.|.++.+.... ...++..+ .+++|+++||+     +||+.+..+.++..++.+.+   +..+ 
T Consensus       240 ~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-----g~~~~l~i~~~l~~l~~l~~~~l~~~~-  313 (491)
T PRK11010        240 FAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-----SLFRALMIFGILQGVSNAGYWLLSITD-  313 (491)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence            33445567777779999999998764 44455555 68899999996     44455544444333333222   2221 


Q ss_pred             chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Q 011112          103 FRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLF  182 (493)
Q Consensus       103 ~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~  182 (493)
                        .+.+.+....++..++.+...+...++..++.+   .+.+++.+|+.+...++|..+++.+.|++.+..||+..|.+.
T Consensus       314 --~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~---~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~  388 (491)
T PRK11010        314 --KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCN---KSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFS  388 (491)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence              133334445555555555555666788888875   477889999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhhccccc
Q 011112          183 TVLPAIQLLSCGLVKEN  199 (493)
Q Consensus       183 ~~~~~l~~i~~~~~~e~  199 (493)
                      +++.++..+...+.+++
T Consensus       389 ~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        389 VAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            87776665555545543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.10  E-value=7.2e-09  Score=105.86  Aligned_cols=149  Identities=14%  Similarity=0.114  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHH
Q 011112           30 WTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTW  108 (493)
Q Consensus        30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~  108 (493)
                      ...++.+++ +.|.++++.|...++......+ +.+.|+++||+     +||+.+..+..+..++.....  +    .. 
T Consensus       220 ~~~lp~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----~~~~~l~~~~~~~~~~~~~~~--~----~~-  286 (381)
T PRK03633        220 YGLMPLYLN-HQGMSDASIGFWMALLVSAGILGQWPIGRLADRF-----GRLLVLRVQVFVVILGSIAML--S----QA-  286 (381)
T ss_pred             HHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-----CcHHHHHHHHHHHHHHHHHHh--h----hH-
Confidence            344566665 4799999999887777666655 78899999995     566777666666555544332  1    11 


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Q 011112          109 HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAI  188 (493)
Q Consensus       109 ~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l  188 (493)
                      .....+++.+++.....+..++.+.|..+   +++++...+......++|..+||.++|++.|+.+|++.|.+.+.+.++
T Consensus       287 ~~~~~~~l~g~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~  363 (381)
T PRK03633        287 AMAPALFILGAAGFTLYPVAMAWACEKVE---HHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFI  363 (381)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            22334455565555556667777777663   466777788888889999999999999999999999999988766654


Q ss_pred             HHHHhh
Q 011112          189 QLLSCG  194 (493)
Q Consensus       189 ~~i~~~  194 (493)
                      ..+..+
T Consensus       364 ~~~~~~  369 (381)
T PRK03633        364 YLLMLL  369 (381)
T ss_pred             HHHHHH
Confidence            444333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.09  E-value=3.5e-09  Score=105.35  Aligned_cols=178  Identities=19%  Similarity=0.130  Sum_probs=134.2

Q ss_pred             hhchhHHHHHHHHHHHHhH-HHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            7 VFGVSFLWLICLIYFTQGF-RSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~-~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      .++.+.+|.+++.+++-.+ +.-+....|.|+.|+.|.|..+.++..+++=++-.. ..++|++|||+  ++.||.+.-+
T Consensus       248 VL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDkl--fkgrR~p~~~  325 (448)
T COG2271         248 VLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKL--FKGRRGPMAL  325 (448)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cccccchHHH
Confidence            4678889989999987776 456667778899999999999999998888776666 46899999997  3446667777


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHH-HHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLG-SAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAF-GGICG  162 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~-G~~lg  162 (493)
                      +..++.+++.......++.  ++....++.++.|+. ++.+ ...-....|..   |.+-.|.+.|+...+.++ |.+.+
T Consensus       326 i~~~~i~~~~~~~w~~~~~--~~~l~~~~l~~iGf~IyGPq-mLiGl~a~e~~---pK~AaGtA~Gf~Glf~Yl~Ga~~a  399 (448)
T COG2271         326 IFMLLITASLVLYWLAPNG--SYLLDAILLFIIGFLIYGPQ-MLIGLAAAEFV---PKKAAGTATGFVGLFAYLIGAALA  399 (448)
T ss_pred             HHHHHHHHHHHHHHcCCCc--cHHHHHHHHHHHHHHHhhHH-HHHHHHHhccc---cHhhccchhchhhhHHHHhhHHhc
Confidence            7777777777766666643  455666666666654 3333 33444455776   458899999999999998 88899


Q ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHHHH
Q 011112          163 SLLGGYALTNIEIDRIFLLFTVLPAIQLLS  192 (493)
Q Consensus       163 ~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~  192 (493)
                      ....|++.|.+||...|.+..+..++..+.
T Consensus       400 ~~~~g~i~d~~gW~g~Fi~~~~~a~l~~ll  429 (448)
T COG2271         400 GLPLGYIADTWGWDGGFIVLSIAALLAILL  429 (448)
T ss_pred             CCcceeeEecCCCcchHHHHHHHHHHHHHH
Confidence            999999999999999998877655555443

>PRK09952 shikimate transporter; Provisional

Probab=99.08  E-value=1.1e-08  Score=106.58  Aligned_cols=165  Identities=13%  Similarity=0.114  Sum_probs=106.4

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhh
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSS  106 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~  106 (493)
                      ......++++++++|.+.++......+......+ .+++|+++||+     +||+.++.+.++.+++...+.......+.
T Consensus       268 ~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (438)
T PRK09952        268 IVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-----GRRRVYITGALIGTLSAFPFFMALEAQSI  342 (438)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence            4445667788888999887654433333333333 68899999995     45666666665554443333221101112


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHH-HHHHHHHHHHHHHHhhccc--cHHHHHHHHH
Q 011112          107 TWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLA-MAFGGICGSLLGGYALTNI--EIDRIFLLFT  183 (493)
Q Consensus       107 ~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~-~~~G~~lg~~i~g~l~~~~--gw~~~f~~~~  183 (493)
                      .+.+++..++.+++.+...+...+++.|..+   .+.|+...++.+.. ..+|+.++|.+.+++.+..  +|+..+...+
T Consensus       343 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p---~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~  419 (438)
T PRK09952        343 FWIVFFSIMLANIAHDMVVCVQQPMFTEMFG---ASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLL  419 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---cchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            3333444555567766666777888999884   47888888885544 4588999999999998743  4888888777


Q ss_pred             HHHHHHHHHhhcccccc
Q 011112          184 VLPAIQLLSCGLVKENR  200 (493)
Q Consensus       184 ~~~~l~~i~~~~~~e~~  200 (493)
                      ++.++..+..+.+||++
T Consensus       420 ~~~~i~~v~~~~~~~~~  436 (438)
T PRK09952        420 AGCLISAMTALLMKDNQ  436 (438)
T ss_pred             HHHHHHHHHHHHccccc
Confidence            66666655556667654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.08  E-value=6.1e-09  Score=110.11  Aligned_cols=149  Identities=15%  Similarity=0.138  Sum_probs=102.7

Q ss_pred             HHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHH
Q 011112           30 WTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTW  108 (493)
Q Consensus        30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~  108 (493)
                      ...+++++++++|.+..+.+...+...++..+ .++.|+++||+     +||+.++.+..+..+..+.....++  ...+
T Consensus       295 ~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  367 (496)
T PRK03893        295 QALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-----GTRKAYVCSLLISQLLIIPVFAIGG--ANVW  367 (496)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHhhccc--cHHH
Confidence            34567788778999999999998888877766 68899999995     4555666665554444433332221  1223


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Q 011112          109 HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAI  188 (493)
Q Consensus       109 ~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l  188 (493)
                      ...+..++.++......+...+++.|..   |+++||+++|+.+....+|..+||.++|++.++.||+..+...+....+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        368 VLGLLLFFQQMLGQGISGLLPKLIGGYF---DTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHHhhC---CHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            3333333333222223344556777777   4589999999999999999999999999999999999887665544333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.08  E-value=1e-08  Score=112.35  Aligned_cols=133  Identities=18%  Similarity=0.045  Sum_probs=102.1

Q ss_pred             HhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 011112           56 FFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAE  134 (493)
Q Consensus        56 ~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~  134 (493)
                      .+.... .++.|+++||+     +||+.++.+.++.+++.+++++.++    ...+++.+++.+++.+...+...++++|
T Consensus       605 ~l~~i~G~il~g~L~Dr~-----GRr~~l~~~~~lsai~~ll~~~~~s----~~~ll~~~~l~g~~~~~~~~~~~a~~aE  675 (742)
T TIGR01299       605 TLAVLPGNIVSALLMDKI-----GRLRMLAGSMVLSCISCFFLSFGNS----ESAMIALLCLFGGLSIAAWNALDVLTVE  675 (742)
T ss_pred             HHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHHcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445 57899999995     6788888888888888777776642    3345566667677666677778899999


Q ss_pred             HhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhccccccc
Q 011112          135 AAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRV  201 (493)
Q Consensus       135 ~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~  201 (493)
                      +.|   .++|++++|+......+|.++||.+++.+.+. +...+|++.+++.++..++.+++||++.
T Consensus       676 l~P---t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       676 LYP---SDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             HcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            984   58899999999999999999999999988764 4567787777766665555666798764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.08  E-value=6.6e-09  Score=106.77  Aligned_cols=152  Identities=15%  Similarity=0.175  Sum_probs=106.9

Q ss_pred             HHHHHHHHHhhhCCCHhh----HHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccch
Q 011112           30 WTAVSYQLKDKLKFSPSA----SQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFR  104 (493)
Q Consensus        30 ~~~~~~~l~~~~g~s~~~----~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~  104 (493)
                      ....+.+..+..+ +..+    .+...++..+...+ .+.+|+++||+     +||+.+..+.....++.+.....+   
T Consensus       239 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~---  309 (408)
T PRK09874        239 APILTLYVRELAG-NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-----GPEKILITALIFSVLLLIPMSFVQ---  309 (408)
T ss_pred             HHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHHhc---
Confidence            3444556555333 3333    23333344444444 68899999995     456666677666655555544443   


Q ss_pred             hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Q 011112          105 SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTV  184 (493)
Q Consensus       105 ~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~  184 (493)
                       +.+.+.+.+++.+++.+...+...+++.+..   |+++||+.+++......+|..+||.++|.+.++.||++.|++.++
T Consensus       310 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~  385 (408)
T PRK09874        310 -TPLQLGILRFLLGAADGALLPAVQTLLVYNS---SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAG  385 (408)
T ss_pred             -cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC---CcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHH
Confidence             3455667777888888887777777776665   458899999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHhh
Q 011112          185 LPAIQLLSCG  194 (493)
Q Consensus       185 ~~~l~~i~~~  194 (493)
                      +.++..+..+
T Consensus       386 ~~l~~~~~~~  395 (408)
T PRK09874        386 VVLFNAVYSW  395 (408)
T ss_pred             HHHHHHHHHH
Confidence            7666555444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.06  E-value=1.1e-08  Score=105.30  Aligned_cols=156  Identities=16%  Similarity=0.063  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhh
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSS  106 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~  106 (493)
                      ......+.+++ +.|.+..+.+...+...+...+ ++++|+++||+     +||+.+..+.+...++.+.+...+    +
T Consensus       238 ~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~----~  307 (406)
T PRK11551        238 FLLNWLPSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-----RPRRVVLLIYAGILASLAALAAAP----S  307 (406)
T ss_pred             HHHHHHHHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHhcC----c
Confidence            33445566665 4899999999888887777666 78999999995     456666665555555544444443    2


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHH
Q 011112          107 TWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI-EIDRIFLLFTVL  185 (493)
Q Consensus       107 ~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~-gw~~~f~~~~~~  185 (493)
                      .+.+.+..++.+++.+...+...+++.|..   |+++|++..|+......+|..+||.++|++.++. +|+..++..+..
T Consensus       308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~  384 (406)
T PRK11551        308 FAGMLLAGFAAGLFVVGGQSVLYALAPLFY---PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPV  384 (406)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHc---chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHH
Confidence            333444555566665555666777888887   4589999999999999999999999999998874 466666655544


Q ss_pred             HHHHHHHhhcc
Q 011112          186 PAIQLLSCGLV  196 (493)
Q Consensus       186 ~~l~~i~~~~~  196 (493)
                      .++..+..+++
T Consensus       385 ~~~~~~~~~~~  395 (406)
T PRK11551        385 ILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHHHH
Confidence            44433333333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.04  E-value=3.5e-09  Score=107.81  Aligned_cols=191  Identities=16%  Similarity=0.226  Sum_probs=126.9

Q ss_pred             HHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Q 011112          280 AIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRI  359 (493)
Q Consensus       280 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~  359 (493)
                      .+.+.+.+++++....++.+.+++....... ....+|-.++.|-.+.-.|...+....+.++.-++..++.+|+|.-++
T Consensus       360 v~a~~~~~~~s~~~llff~~av~mG~g~~lv-~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v  438 (618)
T KOG3762|consen  360 VLADVGKVFASPHILLFFFVAVVMGAGVGLV-FTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNV  438 (618)
T ss_pred             HHHHHHHHhcCCCEEehhHHHHHHHHHHHHH-HHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccce
Confidence            3445667788887655433333222211111 112244445567666677877788888999988889999999999888


Q ss_pred             HHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHh-hh
Q 011112          360 LLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISN-FG  438 (493)
Q Consensus       360 l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~-lg  438 (493)
                      +..+..+...= ++.  ...       ..+.|.++.+-.+..++....+...-+|++..+||+.++++++++..... +|
T Consensus       439 ~~lgLa~~~~R-f~~--~S~-------L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG  508 (618)
T KOG3762|consen  439 MYLGLACNVGR-FLY--YSY-------LQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLG  508 (618)
T ss_pred             eeehhhHHHHH-HHH--HHH-------hcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccC
Confidence            88776665543 111  111       23456666666777777777777777899999999999999999988554 89


Q ss_pred             hhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhh-hcccC
Q 011112          439 STVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFL-FLIPK  486 (493)
Q Consensus       439 ~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  486 (493)
                      .++|+++||.+.+++|-..     .+..+.+..++.++..+.+ +.++|
T Consensus       509 ~g~GslIGG~~v~~fg~~t-----tf~~~giAcl~~l~~~~~iq~~l~~  552 (618)
T KOG3762|consen  509 KGLGSLIGGFVVERFGART-----TFRIFGIACLVTLALFISIQLLLKR  552 (618)
T ss_pred             cchhhhhhhhhheeehhHH-----HHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            9999999999999887543     2334455555555544444 34443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.02  E-value=5.4e-07  Score=88.74  Aligned_cols=178  Identities=16%  Similarity=0.113  Sum_probs=101.3

Q ss_pred             hchhHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHh-hhhhhhhcccccccCCCCchhHHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS-IKPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~-~~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +|++++.    .|.+.-.....+.|-...+-+++|.+..|++.+...-+.... ++++.|.++||+     +||+.-+.-
T Consensus        35 Fqr~yl~----vY~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-----Grk~~cl~~  105 (354)
T PF05631_consen   35 FQRKYLL----VYLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-----GRKKACLLF  105 (354)
T ss_pred             HHHHHHH----HHHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CchHHHHHH
Confidence            4444444    444433333333333333335699999999887665555444 489999999995     566666666


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHhhh-hchhcchhHHHHHH-HHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIA-EAAKS-ERAAFAGDLQSLSW-LAMAFGGICGS  163 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~-~~~~~-~~~~~rg~~~g~~~-~~~~~G~~lg~  163 (493)
                      +++..++++..- .    ++++.+++.|++.|++.+.-..+-.+... |.-++ .|.+..+...+... ....+-.++..
T Consensus       106 cily~~scl~k~-~----~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aG  180 (354)
T PF05631_consen  106 CILYSLSCLTKH-S----SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAG  180 (354)
T ss_pred             HHHHHHHHHHHh-c----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHh
Confidence            677777765422 2    35788999999999999988777766643 32211 12222222222221 11122234444


Q ss_pred             HHHHHhhcccc--HHHHHHHHHHHHHHHHHHhh-ccccc
Q 011112          164 LLGGYALTNIE--IDRIFLLFTVLPAIQLLSCG-LVKEN  199 (493)
Q Consensus       164 ~i~g~l~~~~g--w~~~f~~~~~~~~l~~i~~~-~~~e~  199 (493)
                      +++-++.++.+  -..+|....++.++..+... .-+|+
T Consensus       181 v~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  181 VVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            55555555544  36788876655444444333 23444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.01  E-value=1.1e-08  Score=106.53  Aligned_cols=183  Identities=13%  Similarity=0.090  Sum_probs=107.5

Q ss_pred             chhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +.+..+.+....++.... .......+.+++++.|.|+.+.++..++......+ ++++|+++||++   .+||...  +
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~---~~~~~~~--~  323 (438)
T TIGR00712       249 PNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF---KGNRGAT--G  323 (438)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcccHH--H
Confidence            334444343333333322 23345667888887899999999887777766665 789999999962   2233222  2


Q ss_pred             HHHH---HHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHH-HHHH
Q 011112           87 TVLS---LVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFG-GICG  162 (493)
Q Consensus        87 ~~l~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G-~~lg  162 (493)
                      ....   .++.+.+...+.  .+.+......+..+++.............|..   |+++||++.|+.+....+| ..+|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~gg~~~g  398 (438)
T TIGR00712       324 VFFMTLVTIAVIVYWMNPA--GNPLVDMICMIVIGFLIYGPVMLIGLHALELA---PKKAAGTAAGFTGLFGYLGGSVAA  398 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHccHHHHHHHHHHHhc---ChhheeeehhhhchHHHhhhhhhc
Confidence            2111   112221122111  11222222333333332111111223455665   4589999999998888876 4689


Q ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHHHH-hhccccccc
Q 011112          163 SLLGGYALTNIEIDRIFLLFTVLPAIQLLS-CGLVKENRV  201 (493)
Q Consensus       163 ~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~-~~~~~e~~~  201 (493)
                      |.+.|.+.++.||++.|++.+++.++..+. .+++||++|
T Consensus       399 p~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       399 SAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             chhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            999999999999999998877665555543 355777764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.00  E-value=5.6e-09  Score=108.90  Aligned_cols=158  Identities=16%  Similarity=0.111  Sum_probs=106.3

Q ss_pred             HHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhh---cccch----hh
Q 011112           35 YQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGL---NAFFR----SS  106 (493)
Q Consensus        35 ~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~---~~~~~----~~  106 (493)
                      +++.+++|.+..+.+.......+...+ .++.|+++||+     +||+.+..+.++..++.+.+..   .....    ..
T Consensus       308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (481)
T TIGR00879       308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-----GRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG  382 (481)
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence            344556899998777776666665555 78899999995     4666666776666666555542   11110    01


Q ss_pred             HHHHHHHHHH-HHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Q 011112          107 TWHLIVLLTA-QNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVL  185 (493)
Q Consensus       107 ~~~l~~~~~l-~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~  185 (493)
                      ...+....+. .+++.+. .+...+++.|..   |+++|++++++......+|..+++.+.+++.++.+|++.|++.+++
T Consensus       383 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~  458 (481)
T TIGR00879       383 NVAIVFILLFIAFFAMGW-GPVPWVIVSEIF---PLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGL  458 (481)
T ss_pred             HHHHHHHHHHHHHHHccc-cCeehhhhhccC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHH
Confidence            2122222222 2223222 244556667877   4588999999999999999999999999999999999999988877


Q ss_pred             HHHHHHHh-hccccccc
Q 011112          186 PAIQLLSC-GLVKENRV  201 (493)
Q Consensus       186 ~~l~~i~~-~~~~e~~~  201 (493)
                      .++..+.. ++.||+++
T Consensus       459 ~~~~~i~~~~~~~~~~~  475 (481)
T TIGR00879       459 NVLGLIFVYFFLPETKG  475 (481)
T ss_pred             HHHHHHHHheecccCCC
Confidence            77666554 44676553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.99  E-value=8.3e-09  Score=102.75  Aligned_cols=181  Identities=22%  Similarity=0.225  Sum_probs=126.0

Q ss_pred             hhhhhhchhHHHHHHHHHHH-Hh-HHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCc
Q 011112            3 QLKNVFGVSFLWLICLIYFT-QG-FRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKR   79 (493)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~f~-~g-~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~r   79 (493)
                      |++..++.+..|.+.+.|+. .| +.++ ...++.|+++++|.++.+.|...+.+.+.-++ +|++|+++||+     +.
T Consensus       210 ~~~~v~~~~~~W~lsllY~~tFG~Fvgf-s~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-----Gg  283 (417)
T COG2223         210 QLKAVFSNKDTWLLSLLYFATFGGFVGF-SAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-----GG  283 (417)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-----cc
Confidence            45667888999989999966 23 4443 34567788999999999999888887766665 99999999997     33


Q ss_pred             hhHHHHHHHHHHHHHHHHhhcccch---hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHH
Q 011112           80 IPYLVISTVLSLVPWLILGLNAFFR---SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMA  156 (493)
Q Consensus        80 r~~ii~~~~l~~~~~~~~~~~~~~~---~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~  156 (493)
                      +|.+.......+++....+..++..   .+....++..+...+..+...-....+++.+.+    ++.|.+.|+......
T Consensus       284 ~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~----~~~G~v~G~vga~G~  359 (417)
T COG2223         284 RRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP----KETGAVTGIVGAIGG  359 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH----hhhhHHHHHHHHhcc
Confidence            4455555555666666666554211   122233332333333333333344577777774    688999999999999


Q ss_pred             HHHHHHHHHHHHhhcccc-HHHHHHHHHHHHHHHHHHh
Q 011112          157 FGGICGSLLGGYALTNIE-IDRIFLLFTVLPAIQLLSC  193 (493)
Q Consensus       157 ~G~~lg~~i~g~l~~~~g-w~~~f~~~~~~~~l~~i~~  193 (493)
                      +|+..-|..-|...+..| ++..|++...+.++..+..
T Consensus       360 lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~  397 (417)
T COG2223         360 LGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT  397 (417)
T ss_pred             ccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            999888889898888777 8999998887766666543

>PRK12382 putative transporter; Provisional

Probab=98.99  E-value=3.1e-08  Score=101.49  Aligned_cols=150  Identities=13%  Similarity=0.152  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhH
Q 011112           29 VWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSST  107 (493)
Q Consensus        29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~  107 (493)
                      .....++++++ .|.+.  .+...+.+.+...+ ++++|++.||+     +||+.+..+..+..++.+.+...+    +.
T Consensus       235 ~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~----~~  302 (392)
T PRK12382        235 IGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-----GGVKVAIVSLLVETVGLLLLWLAP----TA  302 (392)
T ss_pred             HHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCeehHHHHHHHHHHHHHHHHcc----cH
Confidence            33444566554 56654  34444445555444 78999999995     455666677777667666655543    33


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Q 011112          108 WHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPA  187 (493)
Q Consensus       108 ~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~  187 (493)
                      +...+..++.+++.+...+...+.+.|..   |+++||++.|+.+....+|..+|+.+.|++.++.||++.|.+.+++.+
T Consensus       303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~  379 (392)
T PRK12382        303 WVALAGAALTGAGCSLIFPALGVEVVKRV---PSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAV  379 (392)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            45556777788887777666666767766   468999999999999999999999999999999999999998887665


Q ss_pred             HHHHHh
Q 011112          188 IQLLSC  193 (493)
Q Consensus       188 l~~i~~  193 (493)
                      +..+..
T Consensus       380 ~~~~~~  385 (392)
T PRK12382        380 LGIIVT  385 (392)
T ss_pred             HHHHHH
Confidence            555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.96  E-value=6.7e-08  Score=99.50  Aligned_cols=173  Identities=9%  Similarity=-0.083  Sum_probs=112.8

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++.+.++......++..+.. ......+.++++++|.++.+.+........+..+ .+++|+++||+     +||+.+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-----~~~~~~~~  286 (406)
T PRK15402        212 LKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-----PLRSLIRM  286 (406)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHH
Confidence            44455554444444433322 2223345666778999999988776555555555 68899999985     56667777


Q ss_pred             HHHHHHHHHHHHhhccc-chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAF-FRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL  164 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~  164 (493)
                      +.++..++...+...+. ...+.+.+++...+.+++.+...+.........    ++++||++.+..+....+|..+|+.
T Consensus       287 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~g~~  362 (406)
T PRK15402        287 GLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS----SDVSKGTVSAAMGMLSMLIFTVGIE  362 (406)
T ss_pred             HHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh----ccccccHHHHHHHHHHHHHHHHHHH
Confidence            76666666555544321 112344455666677787777665555544322    2388999999999999999999999


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHH
Q 011112          165 LGGYALTNIEIDRIFLLFTVLPAIQ  189 (493)
Q Consensus       165 i~g~l~~~~gw~~~f~~~~~~~~l~  189 (493)
                      +++.+.+..++....+..++..++.
T Consensus       363 ~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        363 LSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHhcccCCchHHHHHHHHHHHHHH
Confidence            9999999888776555544443333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.96  E-value=3.2e-08  Score=99.47  Aligned_cols=156  Identities=15%  Similarity=0.146  Sum_probs=113.0

Q ss_pred             hchhHHHHHHHHHHHHhHH-H-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            8 FGVSFLWLICLIYFTQGFR-S-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~-~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      .+.+.++......++.... . ......+.+.++.+|.+..+.+...+...++..+ .++.|+++||.     +||+.+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~  281 (365)
T TIGR00900       207 LKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-----KRMALMT  281 (365)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----chhHHHH
Confidence            3444555444444443332 2 2224455566656899999999888877776665 78899999984     5666666


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL  164 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~  164 (493)
                      .+..+..++.....+.++   +.+...+..++.+++.+...+...+++.|..   |+++|+++.|+......+|..+|+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~g~~  355 (365)
T TIGR00900       282 GAIFVIGLAILVVGLTPP---NFPLFLVLWFAIGVGYGPINVPQGTLLQRRV---PAELLGRVFGAQFSLSHAAWPLGLI  355 (365)
T ss_pred             HHHHHHHHHHHHHHhhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666665555432   2455667777888988888888889988888   4589999999999999999999999


Q ss_pred             HHHHhhcccc
Q 011112          165 LGGYALTNIE  174 (493)
Q Consensus       165 i~g~l~~~~g  174 (493)
                      ++|++.|+.|
T Consensus       356 ~~g~l~~~~g  365 (365)
T TIGR00900       356 LAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHcC
Confidence            9999988654

>PRK10504 putative transporter; Provisional

Probab=98.96  E-value=7.6e-08  Score=101.15  Aligned_cols=159  Identities=16%  Similarity=0.043  Sum_probs=109.9

Q ss_pred             chhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +.+.+.......++..+.. ......+.|++..+|.++.+.++......+.... .+++|+++||+     +||+.++.+
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-----g~~~~~~~~  333 (471)
T PRK10504        259 RTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-----GYRRVLVAT  333 (471)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHHHH
Confidence            3344444444445544432 3344455666767899999999877666665554 68999999995     566777777


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      .....+..+++...+.. .+.+...+..++.+++.+...+..+.++.+..   |++++|...|+......+|..+|+.++
T Consensus       334 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~g~~ig~~i~  409 (471)
T PRK10504        334 TLGLALVSLLFMLVALL-GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDL---PDNLASSGNSLLSMIMQLSMSIGVTIA  409 (471)
T ss_pred             HHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            77666665555544321 12333344555667777777777788887776   458999999999999999999999999


Q ss_pred             HHhhccccHH
Q 011112          167 GYALTNIEID  176 (493)
Q Consensus       167 g~l~~~~gw~  176 (493)
                      |.+.+..++.
T Consensus       410 g~ll~~~g~~  419 (471)
T PRK10504        410 GLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHhhhh
Confidence            9998776653

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.96  E-value=1.4e-07  Score=99.83  Aligned_cols=152  Identities=17%  Similarity=0.201  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhH
Q 011112           29 VWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSST  107 (493)
Q Consensus        29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~  107 (493)
                      ...-+|.+.++++|.+....|.+.+.+.++..+ ..+.+.+.+|.     ++++++..+.+.+.++.+.+++.+    +.
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-----~~~~lv~~~~~~~a~~~~~lal~~----~~  307 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-----SSRRLVLLASLLFALALLLLALSP----SF  307 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CcchhhHHHHHHHHHHHHHHhcch----HH
Confidence            334455566778999999999999999999887 45677777764     455677778878888877777765    45


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Q 011112          108 WHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPA  187 (493)
Q Consensus       108 ~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~  187 (493)
                      +...+..++.|++.....+..++.+-+.+   |++.|||+++++......+..+|..+.|.+.++.|.+..+.+.++..+
T Consensus       308 ~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~---P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~ll  384 (524)
T PF05977_consen  308 WLALIALFLAGAAWIIANSSLNTLVQLSV---PDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALL  384 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            56667777788887777766666655555   569999999999999999999999999999999999999887775544


Q ss_pred             HHHHH
Q 011112          188 IQLLS  192 (493)
Q Consensus       188 l~~i~  192 (493)
                      +..+.
T Consensus       385 l~~~~  389 (524)
T PF05977_consen  385 LSALI  389 (524)
T ss_pred             HHHHH
Confidence            44433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.95  E-value=1.6e-08  Score=102.22  Aligned_cols=163  Identities=20%  Similarity=0.170  Sum_probs=103.3

Q ss_pred             chhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH-
Q 011112            9 GVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI-   85 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~-   85 (493)
                      +.+.++.+.+.++..... .......+.++++++|.+..+.+...+...+...+ .++.|+++||..   .+||..+.. 
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~---~~~~~~~~~~  290 (379)
T TIGR00881       214 LNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF---NGRRGPLAVF  290 (379)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc---CCcchHHHHH
Confidence            344555455555554443 24455667788888999999999888877776666 688999999741   223322222 


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      ......++.......+.  .+.....+..++.++......+....++.|..   |+++||++.|+.+....+|..+++.+
T Consensus       291 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~g~~~~~~~  365 (379)
T TIGR00881       291 FMALIIVSLLVYWLNPA--ANPLMDLICLFALGFLVYGPQMLIGVIASELA---PKKAAGTAAGFVGFFAYLGGILAGLP  365 (379)
T ss_pred             HHHHHHHHHHHHhcCcc--hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc---CcchhHHHHHHHHHhhhhhhhhhhhh
Confidence            22222222222222111  12223334444445443333344456677776   45899999999999999999999999


Q ss_pred             HHHhhccccHHHHH
Q 011112          166 GGYALTNIEIDRIF  179 (493)
Q Consensus       166 ~g~l~~~~gw~~~f  179 (493)
                      .|.+.++.||++.|
T Consensus       366 ~g~l~~~~g~~~~f  379 (379)
T TIGR00881       366 LGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHhhcccccC
Confidence            99999999998764

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.95  E-value=6.2e-08  Score=99.71  Aligned_cols=149  Identities=16%  Similarity=0.155  Sum_probs=93.7

Q ss_pred             HHHHHhhhCCCHhhHHHHHHHHHh-hHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHH---hhcccchhhHH
Q 011112           34 SYQLKDKLKFSPSASQFVSAVAFF-PWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLIL---GLNAFFRSSTW  108 (493)
Q Consensus        34 ~~~l~~~~g~s~~~~g~~~s~~~l-~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~---~~~~~~~~~~~  108 (493)
                      ++++.+++|.++++++...+.... ...+ .+++|+++||+     +||+.+..+.....+..+.+   +..+   ++.+
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-----g~~~~l~~~~~~~~l~~l~~~~~~~~~---~~~~  304 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-----GLYRSLMLFGVLQAVSNLGYWVLAVTP---KHLW  304 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHhcC---CcHH
Confidence            456677799999999987655433 3444 68899999995     45555555544444433322   2332   1333


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Q 011112          109 HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAI  188 (493)
Q Consensus       109 ~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l  188 (493)
                      .+.+..+++.+..+.......+....+.++   +..++..++.....++|..+++.++|.+.++.||+..|.+.+++.++
T Consensus       305 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~  381 (402)
T PRK11902        305 TMALAIGIENLCGGMGTAAFVALLMALCNR---SFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALP  381 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            444444444444444444445555555543   22344566666677788887778999999999999999988877666


Q ss_pred             HHHHh
Q 011112          189 QLLSC  193 (493)
Q Consensus       189 ~~i~~  193 (493)
                      ..+..
T Consensus       382 ~~~~~  386 (402)
T PRK11902        382 GLALL  386 (402)
T ss_pred             HHHHH
Confidence            54443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.95  E-value=2e-06  Score=88.34  Aligned_cols=381  Identities=18%  Similarity=0.165  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHh-hHhhhhhhhhcccccccCCCCchhHHHHHH--
Q 011112           12 FLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFF-PWSIKPLYGILSDCIPIKGRKRIPYLVIST--   87 (493)
Q Consensus        12 ~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l-~~~~~~~~G~lsDr~~~~g~~rr~~ii~~~--   87 (493)
                      ..+.+...+|+....+ +...+++.++.+-+.-+.--.+.+--...+ ...++|..|...||.+     |.+.+..+.  
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~-----Rl~~~~~~l~~   77 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSP-----RLKVIRTSLVV   77 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCc-----chhhHHHHHHH
Confidence            3444566677777654 666677777776544333322211111112 2335899999999953     443433322  


Q ss_pred             --HHHHHHHHHHh--hcccch--hhHHHHHHHHHHHHhhhhhHHHHHHHH--H--HHHh---hhhchhcchhHHHHHHHH
Q 011112           88 --VLSLVPWLILG--LNAFFR--SSTWHLIVLLTAQNLGSAMADVVVDAM--I--AEAA---KSERAAFAGDLQSLSWLA  154 (493)
Q Consensus        88 --~l~~~~~~~~~--~~~~~~--~~~~~l~~~~~l~~~~~~~~~~~~~al--i--~~~~---~~~~~~~rg~~~g~~~~~  154 (493)
                        +..++++.++.  +....+  .+.+....+..+..+.++.......+.  .  .|..   .+.+++.+.+.++...-.
T Consensus        78 Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRI  157 (432)
T PF06963_consen   78 QNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRI  157 (432)
T ss_pred             HHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHH
Confidence              22222222221  111111  011222333333222222222221111  1  1211   122567788888888888


Q ss_pred             HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh-hc---c-ccccccchhhhcccccCCCcccCCCCcccCCC-
Q 011112          155 MAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSC-GL---V-KENRVSTKVLKEFSSSNGYHQVNGNESILDDE-  228 (493)
Q Consensus       155 ~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~-~~---~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  228 (493)
                      --+--+++|++.|.+.++.+.+....+.++..++....- ++   + +..| ....+++         .++.+.+..++ 
T Consensus       158 DL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P-~L~~~~~---------~~~~~~~~~~~~  227 (432)
T PF06963_consen  158 DLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVP-ALAVKKR---------SSESESSSDEES  227 (432)
T ss_pred             HHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HhcCCCC---------Cccccccccccc
Confidence            888899999999999998898887777777766665421 11   1 1111 1100000         00000000000 


Q ss_pred             CCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhccc
Q 011112          229 DGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVP  308 (493)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~  308 (493)
                      ...  ++      . .+       .               ......+..++..+.....+++|.+...+.+.+++.... 
T Consensus       228 ~~~--~~------~-~~-------~---------------~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~TVL-  275 (432)
T PF06963_consen  228 SSE--SS------S-DP-------S---------------ILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFTVL-  275 (432)
T ss_pred             ccc--cc------c-hh-------h---------------HHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHHHh-
Confidence            000  00      0 00       0               000011122333334455677887665554444422222 


Q ss_pred             CCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCcc
Q 011112          309 NLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGIS  388 (493)
Q Consensus       309 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~  388 (493)
                      ++...+..|+.. .|+|+..+|.....+.+..+.|+..+.++.+|+|..|.=.++.........+  .....+.  .+.+
T Consensus       276 sf~~lmt~yl~~-~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~--~v~~~~~--~~~~  350 (432)
T PF06963_consen  276 SFGGLMTAYLKS-QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLAL--CVVSFWA--PGSP  350 (432)
T ss_pred             cCcHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH--HHHHHhc--CCCC
Confidence            234445556555 4999999999999999999999999999999999888777776655543211  1111111  0111


Q ss_pred             -Cce--EeeehhHHHHHHHHhhHh-HHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHh
Q 011112          389 -DKT--MVLYGSALVDAVNQFKFM-PFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSF  444 (493)
Q Consensus       389 -~~~--~~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~  444 (493)
                       ...  ..+..+....-++-+.+= ....+++|..|+++||+..|.-++.+++-..+.-.
T Consensus       351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence             111  111111111112211111 12346888999999999999999999887655433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.94  E-value=2.2e-08  Score=102.33  Aligned_cols=142  Identities=13%  Similarity=0.075  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhH
Q 011112           29 VWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSST  107 (493)
Q Consensus        29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~  107 (493)
                      .....++++++++|.+..+.+...+...++..+ .++.|+++||+     +||+.+..+.....+........+   .+.
T Consensus       257 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----g~~~~~~~~~~~~~~~~~~~~~~~---~~~  328 (405)
T TIGR00891       257 IQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-----GRRKAYVCSLLAGQLLIIPVFAIG---ANV  328 (405)
T ss_pred             hhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchhhhHHHHHHHHHHHHHHHHhC---Cch
Confidence            334557788888999999999988887777766 78999999995     455566666554423222222222   123


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc-HHHHHHH
Q 011112          108 WHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIE-IDRIFLL  181 (493)
Q Consensus       108 ~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~g-w~~~f~~  181 (493)
                      +.+.+..++.+++.+...+...+++.|..   |+++|++++|+.+....+|..+||.++|++.++.| |+..+..
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       329 AVLGLGLFFQQMLVQGIWGILPKHLGEYF---PTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHccchhhHHHHHhhhC---CcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            34444444445544444456667888877   45899999999999999999999999999999988 8877654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.94  E-value=1.3e-08  Score=107.31  Aligned_cols=181  Identities=17%  Similarity=0.062  Sum_probs=103.3

Q ss_pred             hchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCC-C-chhHH
Q 011112            8 FGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGR-K-RIPYL   83 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~-~-rr~~i   83 (493)
                      ++.+..|.+...+++.... ......++.++.+++|.+..+.+.+.++..+...+ ++++|+++||+..|.. | |+...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~  328 (476)
T PLN00028        249 VTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWAL  328 (476)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHH
Confidence            3334445455555543332 23344567787888999999999888887776665 7899999999742211 1 22232


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGS  163 (493)
Q Consensus        84 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~  163 (493)
                      ....++..+........+    +.+..++..++.+++.+.......+++.++.    +++||.+.|+.....++|+.+++
T Consensus       329 ~~~~~l~~i~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~g~lg~~i~~  400 (476)
T PLN00028        329 WIVQTLGGVFCIWLGRAN----SLGAAIVVMILFSIFVQAACGATFGIVPFVS----RRSLGVISGLTGAGGNVGAVLTQ  400 (476)
T ss_pred             HHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHHHHHHhhhhhcccCcccC----hhhchhhhhhhhccccHHHHHHH
Confidence            233333222222222222    2223333333444444333333444444443    47899999998776666666665


Q ss_pred             HHHHHhhccccHHHHHHHHHHHHHHHHHHhhccc
Q 011112          164 LLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVK  197 (493)
Q Consensus       164 ~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~  197 (493)
                      .+-+ ..+..+|+..|++.+++.++..++.++++
T Consensus       401 ~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        401 LLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             HHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            5543 22345699999998877666666555554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.94  E-value=7.1e-08  Score=100.34  Aligned_cols=183  Identities=15%  Similarity=0.087  Sum_probs=100.7

Q ss_pred             hhchhHHHHHHHHHHHH-hHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112            7 VFGVSFLWLICLIYFTQ-GFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~-g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      .++.+..+.+...++.. ... +.....++.++++++|.+..+.+...++..+...+ +++.|+++||+     +||+.+
T Consensus       238 l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-----grr~~~  312 (432)
T PRK10406        238 LWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-----GRRTSM  312 (432)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHH
Confidence            34444445444444332 332 23445677888888999998888777665555444 78899999996     344454


Q ss_pred             HHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHH-HHHH
Q 011112           84 VISTVLSLVPWLILG-LNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAF-GGIC  161 (493)
Q Consensus        84 i~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~-G~~l  161 (493)
                      +.+..+..+...... ..... .+....+....+..++.+.......++..|.+   |++.|+.+.|+.+...+. ....
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f---p~~~r~t~~g~~~~~g~~~~g~~  388 (432)
T PRK10406        313 LCFGSLAALFTVPILSALQNV-SSPYAAFGLVMCALLIVSFYTSISGILKAEMF---PAQVRALGVGLSYAVANALFGGS  388 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCccchhhhHHHHHHHHHHHhH
Confidence            444433322222111 11111 11122222222233333333344567778888   458999999998876554 2334


Q ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhcccc
Q 011112          162 GSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKE  198 (493)
Q Consensus       162 g~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e  198 (493)
                      .|.+.+.+.+...|...++..++..++..+..+++++
T Consensus       389 ~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~~  425 (432)
T PRK10406        389 AEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHR  425 (432)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            7777776643323666666555555554444444443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.92  E-value=9.5e-08  Score=96.00  Aligned_cols=176  Identities=20%  Similarity=0.099  Sum_probs=125.0

Q ss_pred             hhhchhHHHHHHHHHHHHhH-HHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112            6 NVFGVSFLWLICLIYFTQGF-RSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus         6 ~~~~~~~~~~~~~~~f~~g~-~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      +.++++.++......++..- ....+..+.|++++..|.|.+++++..-.+.++..+ +.+.|.++||      +.|+.+
T Consensus       206 ~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr------~~~~~l  279 (394)
T COG2814         206 RLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR------GPRRAL  279 (394)
T ss_pred             HHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc------cchhHH
Confidence            34666666644444333211 224567778999999999999999988888887777 6899999997      355566


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGS  163 (493)
Q Consensus        84 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~  163 (493)
                      +....+.++..+.+.+.++   +.+..++..++.++....   ..+.+..+..+. -++.++.+.++.....++|..+|.
T Consensus       280 ~~~~~l~a~~~l~l~~~~~---~~~~~~~~~~~wg~a~~~---~~~~~~~~~a~~-~p~~~~~a~sl~~aa~nlgia~GA  352 (394)
T COG2814         280 IAALLLLALALLALTFTGA---SPALALALLFLWGFAFSP---ALQGLQTRLARL-APDAADLAGSLNVAAFNLGIALGA  352 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHhhh---hhhHHHHHhccc-CCCchHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666555542   334444555554444333   455666666652 358899999999999999999999


Q ss_pred             HHHHHhhccccHHHHHHHHHHHHHHHHHHhh
Q 011112          164 LLGGYALTNIEIDRIFLLFTVLPAIQLLSCG  194 (493)
Q Consensus       164 ~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~  194 (493)
                      .+||.+.+++|++...+..+++.++..+..+
T Consensus       353 ~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         353 ALGGLVLDALGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998877666665544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.91  E-value=8.7e-08  Score=98.16  Aligned_cols=174  Identities=13%  Similarity=0.041  Sum_probs=110.1

Q ss_pred             hchhHHHHHHHHHHHHhH-HHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHh-hHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            8 FGVSFLWLICLIYFTQGF-RSFVWTAVSYQLKDKLKFSPSASQFVSAVAFF-PWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~-~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l-~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      ++.+..+......++... ........+++++| .|.+++++|...+.... ...+ ..+.|+++||+     ++|+.+.
T Consensus       205 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-----g~~~~l~  278 (390)
T TIGR02718       205 FRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-----GLWRTFI  278 (390)
T ss_pred             HcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-----hHHHHHH
Confidence            333334433334444333 23334455677765 89999999997776543 3445 56899999995     5666666


Q ss_pred             HHHHHHHHHHHH-Hhhccc-chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLI-LGLNAF-FRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICG  162 (493)
Q Consensus        85 ~~~~l~~~~~~~-~~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg  162 (493)
                      .+..+..+..+. ...... .............+.+++.+...+...+.+.+..+  +++++|+.+++.+...++|..+|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~lg~~~g  356 (390)
T TIGR02718       279 LGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAG--DGDQAGTDVTAVQSTRDLGELIA  356 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--cccchHHHHHHHHHHHHHHHHHH
Confidence            665544222221 111110 00122223334445566666666666777666653  23788999999999999999999


Q ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHH
Q 011112          163 SLLGGYALTNIEIDRIFLLFTVLPAIQ  189 (493)
Q Consensus       163 ~~i~g~l~~~~gw~~~f~~~~~~~~l~  189 (493)
                      +.++|++.++.||+..|++.+++.++.
T Consensus       357 ~~~~G~l~~~~G~~~~f~~~~~~~l~a  383 (390)
T TIGR02718       357 SSIAGYLTDRFGYAGGFLSGTVLAVLA  383 (390)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence            999999999999999998877655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10054 putative transporter; Provisional

Probab=98.91  E-value=9e-09  Score=105.79  Aligned_cols=134  Identities=19%  Similarity=0.195  Sum_probs=93.7

Q ss_pred             CcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCc
Q 011112          311 STVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDK  390 (493)
Q Consensus       311 ~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~  390 (493)
                      .+.++.|+++++|+|..+.|+......++.+++.++.|++.||+++|+.+..+.++..++.+. ..+.         ++.
T Consensus        27 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~-~~~~---------~~~   96 (395)
T PRK10054         27 LPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA-IPLV---------NNV   96 (395)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH-HHHH---------hHH
Confidence            334456677779999999999988888888889999999999999999988887766554322 1111         111


Q ss_pred             eEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          391 TMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       391 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      +.++....+.............++..+..|+++|++++|+.+...++|..++|.+++.+.+ +|+
T Consensus        97 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~  160 (395)
T PRK10054         97 TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSI  160 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Confidence            1111111111111111122235677889999999999999999999999999999998875 443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.89  E-value=2.1e-07  Score=95.56  Aligned_cols=171  Identities=16%  Similarity=0.120  Sum_probs=109.9

Q ss_pred             hhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            7 VFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      .++++.++.....++...... ......+|++.+++|.+..+.+...+...++..+ +.+.|.+.||.     +|+ .++
T Consensus       212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-----~~~-~l~  285 (394)
T PRK10213        212 LLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-----VKL-ALA  285 (394)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-----chh-HHH
Confidence            345555554433333332221 2234444555667899999999877777766665 67889999972     333 333


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL  164 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~  164 (493)
                      .+..+..++.+.+....   ++.+.+.+..++.+++.+...+..++.+.+..+    +++++..+......++|..+|+.
T Consensus       286 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lg~~~G~~  358 (394)
T PRK10213        286 GAPLVLAVSALVLTLWG---SDKIVATGVAIIWGLTFALVPVGWSTWITRSLA----DQAEKAGSIQVAVIQLANTCGAA  358 (394)
T ss_pred             HHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc----ccHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333322222222   134455566667788888888878877777663    45667777888888999999999


Q ss_pred             HHHHhhccccHHHHHHHHHHHHHHHH
Q 011112          165 LGGYALTNIEIDRIFLLFTVLPAIQL  190 (493)
Q Consensus       165 i~g~l~~~~gw~~~f~~~~~~~~l~~  190 (493)
                      ++|++.++.|++..+...+.+.++..
T Consensus       359 l~G~l~~~~g~~~~~~~~~~~~~~~~  384 (394)
T PRK10213        359 IGGYALDNIGLTSPLMLSGTLMLLTA  384 (394)
T ss_pred             HHHHHHhccChhhHHHHHHHHHHHHH
Confidence            99999999999998888775544443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.89  E-value=1.7e-07  Score=95.72  Aligned_cols=166  Identities=14%  Similarity=0.146  Sum_probs=112.5

Q ss_pred             hhchhHHHHHHHHHHHHhH-HHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            7 VFGVSFLWLICLIYFTQGF-RSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~-~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      .++.+..+.+....++... ........+++++ +.|.+.++.|...++..+.... .++.|++.||+     ++|+.+.
T Consensus       201 i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~l~  274 (382)
T PRK11128        201 LLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-----SARDLLL  274 (382)
T ss_pred             HHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHH
Confidence            3455555544444444333 2333445566765 5899999999888766665554 67899999984     5667777


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHH-HHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSW-LAMAFGGICGS  163 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~-~~~~~G~~lg~  163 (493)
                      .+.+...++.+.++..+    +.+..++..++.+++.+...+....+..+.    +++++++.++... ....+|..+|+
T Consensus       275 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~ig~  346 (382)
T PRK11128        275 LSAICGVVRWGLMGSTT----ALPWLIVIQILHCGTFTVCHLAAMRYIAAR----PGSEVIRLQALYSALAMGGSIAIMT  346 (382)
T ss_pred             HHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            77777777766655543    455566777788888777666555554443    3466788899886 55678889999


Q ss_pred             HHHHHhhccccHHHHHHHHHHHHH
Q 011112          164 LLGGYALTNIEIDRIFLLFTVLPA  187 (493)
Q Consensus       164 ~i~g~l~~~~gw~~~f~~~~~~~~  187 (493)
                      .++|.+.|++|+. .++..+.+.+
T Consensus       347 ~i~G~l~~~~g~~-~~~~~~~~~~  369 (382)
T PRK11128        347 VLSGFLYQHLGAG-VFWVMALVAL  369 (382)
T ss_pred             HHHHHHHHhccHH-HHHHHHHHHH
Confidence            9999999999874 5665554433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.88  E-value=5.9e-08  Score=100.76  Aligned_cols=159  Identities=19%  Similarity=0.227  Sum_probs=108.0

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++.+.++.+...+++..+.. ......+.+.+..+| +..+.+.+.++..++..+ .+++++++||+     +||+.+..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----g~~~~~~~  292 (437)
T TIGR00792       219 FKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-----GRKILFAG  292 (437)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHHH
Confidence            45555554555555544432 222223344444455 556666666666666555 78999999995     56677777


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh----chhcchhHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSE----RAAFAGDLQSLSWLAMAFGGIC  161 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~----~~~~rg~~~g~~~~~~~~G~~l  161 (493)
                      +..+.+++.+.+.+.+   ++.+...+..++.+++.+...+...+++.|..+.+    +++++|...|+.+....+|..+
T Consensus       293 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~l  369 (437)
T TIGR00792       293 GILLMVLGYLIFFFAG---SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQAL  369 (437)
T ss_pred             HHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHH
Confidence            8777777766655543   13344556666778888888888899998887532    2466899999999999999999


Q ss_pred             HHHHHHHhhccccH
Q 011112          162 GSLLGGYALTNIEI  175 (493)
Q Consensus       162 g~~i~g~l~~~~gw  175 (493)
                      |+.+.|++.+..||
T Consensus       370 g~~i~g~ll~~~G~  383 (437)
T TIGR00792       370 AGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999999876665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.84  E-value=1.8e-07  Score=96.08  Aligned_cols=148  Identities=11%  Similarity=0.081  Sum_probs=98.2

Q ss_pred             HHHHHHHhhh---CCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhH
Q 011112           32 AVSYQLKDKL---KFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSST  107 (493)
Q Consensus        32 ~~~~~l~~~~---g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~  107 (493)
                      ..+.++++.+   +.+.++.|...++..+...+ .+..|++.||+     +||+.++.+..+..+........+    +.
T Consensus       237 ~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-----g~~~~l~~~~~l~~l~~~~~~~~~----~~  307 (396)
T TIGR00882       237 QFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-----GAKNALLIAGTIMSVRIIGSSFAT----TA  307 (396)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHHhcC----Ch
Confidence            4456666554   45556677766666555554 67889999995     566777777777666665545443    34


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Q 011112          108 WHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSL-SWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLP  186 (493)
Q Consensus       108 ~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~-~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~  186 (493)
                      +.+.+..++.+++..........+..+..   |.+.++...+. .+....+|..+++.++|++.+..||+.+|.+.+++.
T Consensus       308 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~  384 (396)
T TIGR00882       308 LEVVILKMLHAFEVPFLLVGCFKYITSQF---DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIV  384 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHH
Confidence            45566667777665443222222222222   34555555555 567889999999999999999999999999988776


Q ss_pred             HHHHH
Q 011112          187 AIQLL  191 (493)
Q Consensus       187 ~l~~i  191 (493)
                      ++..+
T Consensus       385 ~i~~~  389 (396)
T TIGR00882       385 LLFTL  389 (396)
T ss_pred             HHHHH
Confidence            66554

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.84  E-value=2.5e-08  Score=101.43  Aligned_cols=128  Identities=16%  Similarity=0.133  Sum_probs=94.8

Q ss_pred             eeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehh
Q 011112          318 QTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGS  397 (493)
Q Consensus       318 ~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~  397 (493)
                      ..+++|.|+.+.|+......++..++.++.|++.||+|+|+.+..+.++..++.+... ..         ++........
T Consensus        31 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~  100 (385)
T TIGR00710        31 IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA-LS---------NNIETLLVLR  100 (385)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH-HH---------ccHHHHHHHH
Confidence            3456899999999998888999999999999999999999999988877766543221 11         1111111111


Q ss_pred             HHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          398 ALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      .+.....+....+..+++.|..|+++|++.+++.+...++|..+++.+++.+.+.+|+
T Consensus       101 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  158 (385)
T TIGR00710       101 FVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSW  158 (385)
T ss_pred             HHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence            2222222333444567899999999999999999999999999999999998887553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.84  E-value=1.3e-07  Score=99.18  Aligned_cols=185  Identities=16%  Similarity=0.132  Sum_probs=111.1

Q ss_pred             hhchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhH--
Q 011112            7 VFGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPY--   82 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~--   82 (493)
                      .++++.++.....++..... ......+|.|+++++|.+..+.|+..++..+...+ +++.|+++||...++..++..  
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~  336 (465)
T TIGR00894       257 IPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAAR  336 (465)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence            45566677666666665544 34455678888888999999999988777766655 789999999864332222211  


Q ss_pred             -HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHH
Q 011112           83 -LVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGIC  161 (493)
Q Consensus        83 -ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~l  161 (493)
                       +..+..........+..... ..+....+++..+.+.+.+...+.......|..    ++.+|.+.|+.+....+|+.+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~l~~~i  411 (465)
T TIGR00894       337 KIFNGIGGLGPGIFAYALPYL-SAAFYLTIIILTLANAVSSGPLAGVLINSLDLA----PRFLGFIKGITGLPGFIGGLI  411 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcC----hhHHHHHHHHHHHHHHHHHHH
Confidence             11111111111111111110 012223333344444443333333333444544    368999999999999999999


Q ss_pred             HHHHHHHhhcc---ccHHHHHHHHHHHHHHHHHHhhcc
Q 011112          162 GSLLGGYALTN---IEIDRIFLLFTVLPAIQLLSCGLV  196 (493)
Q Consensus       162 g~~i~g~l~~~---~gw~~~f~~~~~~~~l~~i~~~~~  196 (493)
                      +|.+.|++.+.   .+|+..|++.++..++..+...+.
T Consensus       412 ~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       412 ASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             HHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            99999998764   348899998886666555544333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.83  E-value=2.8e-07  Score=93.81  Aligned_cols=182  Identities=14%  Similarity=0.108  Sum_probs=111.4

Q ss_pred             hhhhhchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccccCCCCchhH
Q 011112            4 LKNVFGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPY   82 (493)
Q Consensus         4 ~~~~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g~~rr~~   82 (493)
                      +++.++.+.+|.+...++..... ......+|.++++ .|.+.. .+...++..+.-  .+-.++++||...++ +|+..
T Consensus       185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g--~~g~~~~~d~~~r~~-~r~~~  259 (368)
T TIGR00903       185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAG--LIGVAVIPDRVARAG-LRSIY  259 (368)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHH--HHHHHHhhHHhhhhh-hHHHH
Confidence            44556777778776777664433 3445678889865 788765 444433333221  233588999863222 23333


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHH
Q 011112           83 LVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICG  162 (493)
Q Consensus        83 ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg  162 (493)
                      ......+.++.........    +....+++..+.+++.....+...++..|..   |++.||++.|+.+....+|++.+
T Consensus       260 ~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---p~~~rgt~~G~~~~~g~~~~~~~  332 (368)
T TIGR00903       260 IRAAALLIAAFFLALAFEL----NRLALFAFIGIAGLLMLPAYAIIMDWIGKFC---DKELHGKAAGAIGFTSRAISVAL  332 (368)
T ss_pred             HHHHHHHHHHHHHHHHHcc----ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhc---chhhcCcccchhhHHHHHHHHHH
Confidence            3333333333333333332    1222334444555655555556778888988   55899999999999999999999


Q ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHHHHHhhccccc
Q 011112          163 SLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKEN  199 (493)
Q Consensus       163 ~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~  199 (493)
                      |.+.+.+..  +.+..|.+.+++.++..+.....+++
T Consensus       333 ~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~~~~~  367 (368)
T TIGR00903       333 ALAAMLFIS--SAEAYFTFLAILITIAFAIALLLPND  367 (368)
T ss_pred             HHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999987774  67778888776666655544433543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.82  E-value=4e-07  Score=93.06  Aligned_cols=149  Identities=15%  Similarity=0.148  Sum_probs=95.7

Q ss_pred             HHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 011112           31 TAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWH  109 (493)
Q Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~  109 (493)
                      ..+++++++.+|.++++.+...+...+...+ +++.|+++||+     ++|+.+..+..+..++.+.+...++   +.+.
T Consensus       220 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-----~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~  291 (382)
T PRK10091        220 SYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-----SPLRIAAVTDFIIVLALLMLFFFGG---MKTA  291 (382)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-----CchhHHHHHHHHHHHHHHHHHHHHh---hHHH
Confidence            3456777777899999999988888777666 78999999995     4566666666666665544433221   2233


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHH
Q 011112          110 LIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN-IEIDRIFLLFTVLPAI  188 (493)
Q Consensus       110 l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~-~gw~~~f~~~~~~~~l  188 (493)
                      ..++.++.+.+.....++.+....+...  +.+.++..  .......+|..+||.++|++.++ .+|++.+...+++.++
T Consensus       292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~  367 (382)
T PRK10091        292 SLIFAFICCAGLFALSAPLQILLLQNAK--GGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFA  367 (382)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCC--cchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHH
Confidence            3444444444443333333333333221  23444433  34567789999999999999985 6899999988766555


Q ss_pred             HHH
Q 011112          189 QLL  191 (493)
Q Consensus       189 ~~i  191 (493)
                      ...
T Consensus       368 ~~~  370 (382)
T PRK10091        368 AMS  370 (382)
T ss_pred             HHH
Confidence            543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.78  E-value=2.4e-07  Score=97.58  Aligned_cols=158  Identities=14%  Similarity=0.087  Sum_probs=111.6

Q ss_pred             chhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +.+..+......+..++.. .....++.++++.+|.++.+.|.......++..+ .++.|++.||+     +||+.+..+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~g  327 (485)
T TIGR00711       253 KYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-----DPRKLVTIG  327 (485)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CcHHHHHHH
Confidence            3344443444445544432 3334566788888999999999887777776665 78999999995     567777778


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      ..+.+++...+....+.+.+.+......++.+++.+...++......+..   |+++||++.|+.+....+|..+|+.+.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~g~~ig~~i~  404 (485)
T TIGR00711       328 LILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGL---PPHKIARGSSLSNFTRQLGGSIGTALI  404 (485)
T ss_pred             HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776665522111224445556667788888777666666655555   568999999999999999999999999


Q ss_pred             HHhhcccc
Q 011112          167 GYALTNIE  174 (493)
Q Consensus       167 g~l~~~~g  174 (493)
                      +.+.++..
T Consensus       405 g~~~~~~~  412 (485)
T TIGR00711       405 TTILTNRT  412 (485)
T ss_pred             HHHHHHHH
Confidence            99887643

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.78  E-value=4.3e-07  Score=94.55  Aligned_cols=140  Identities=19%  Similarity=0.083  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHH-HHhhcccchh
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWL-ILGLNAFFRS  105 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~-~~~~~~~~~~  105 (493)
                      ......+.|+++.+|.+..+.++...+..+...+ .+++|+++||+     +||+.++.+.....+... ......+. .
T Consensus       256 ~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~-~  329 (434)
T PRK15075        256 LITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-----GRRPVLIAFTVLAILTAYPALSWLVAA-P  329 (434)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence            4556677888887899999888776666665555 78999999996     345555444333222111 11111111 1


Q ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHH-HHHHHHHHHHHHHhhccccHH
Q 011112          106 STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAM-AFGGICGSLLGGYALTNIEID  176 (493)
Q Consensus       106 ~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~-~~G~~lg~~i~g~l~~~~gw~  176 (493)
                      +.........+.+++.+...+....++.|..   |+++|+...++.+... .+++.++|.+.|++.++.|++
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~---p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        330 SFARMLAVELWLSFLYGSYNGAMVVALTEVM---PAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHC---CCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            2222333333445555555555567778887   4588999999865444 445778999999999988854

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.77  E-value=5.9e-07  Score=93.01  Aligned_cols=144  Identities=13%  Similarity=0.062  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhH
Q 011112           29 VWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSST  107 (493)
Q Consensus        29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~  107 (493)
                      +...+++++++ .|.++.+.+...+...+...+ ++++|+++||+     +||+.+..+.++..+..+.....++  ...
T Consensus       250 ~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  321 (426)
T PRK12307        250 IFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-----GLKKTFSIGLLMSFLFIFPLFRIPQ--DNY  321 (426)
T ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHcc--ccH
Confidence            34556677665 799999888877776666555 78999999995     4566666676665555444333321  122


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Q 011112          108 WHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFT  183 (493)
Q Consensus       108 ~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~  183 (493)
                      .......+..+++..........++.|.+   |+++||+++|+......+|..+||.+.|++.++.|+....++..
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~  394 (426)
T PRK12307        322 LLLGACLFGLMATNVGVGGLVPKFLYDYF---PLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIV  394 (426)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHhC---cHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            11112222222221122233445667776   55899999999999999999999999999999988775444333

>TIGR00896 CynX cyanate transporter

Probab=98.76  E-value=3.3e-07  Score=92.55  Aligned_cols=156  Identities=15%  Similarity=0.075  Sum_probs=105.2

Q ss_pred             hhchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            7 VFGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      .++.+..+.+...+++.... ......++.++++ .|.|..+.+...+...++..+ ++++|+++||+    .+||+.+.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~----~~~~~~~~  267 (355)
T TIGR00896       193 IWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRV----KDQRGIVA  267 (355)
T ss_pred             hhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh----ccchHHHH
Confidence            34445555444444443332 2334456667664 799999999988888877776 78999999996    24566666


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL  164 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~  164 (493)
                      .+..+.+++.+.+.+.+++  ..  . ....+.+++.+...+...+.+.+..+  ++++++...++.+...++|..+||.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~--~~--~-~~~~l~g~~~g~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~gp~  340 (355)
T TIGR00896       268 VLAVLQLVGLCGLLFAPMH--GL--W-AWALVLGLGQGGAFPLALTLIGLRSR--QAAQAAALSAMAQSIGYLLAALGPL  340 (355)
T ss_pred             HHHHHHHHHHHHHHHhhhh--HH--H-HHHHHHHHhhhhHhHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666655554321  11  1 13345677777776666666555432  3577889999999899999999999


Q ss_pred             HHHHhhcccc
Q 011112          165 LGGYALTNIE  174 (493)
Q Consensus       165 i~g~l~~~~g  174 (493)
                      ++|++.|+.|
T Consensus       341 ~~G~l~~~~g  350 (355)
T TIGR00896       341 FVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHhc
Confidence            9999998765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.76  E-value=1.9e-07  Score=96.53  Aligned_cols=162  Identities=13%  Similarity=0.078  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHhHH-HhHHHHHHHHHHh-hhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHH
Q 011112           13 LWLICLIYFTQGFR-SFVWTAVSYQLKD-KLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVL   89 (493)
Q Consensus        13 ~~~~~~~~f~~g~~-~~~~~~~~~~l~~-~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l   89 (493)
                      ++.....+++.... ......+|+++++ +.|.+..+.+...+...+...+ .+++|+++||+    .+||..++...++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~----~~r~~~~~~~~~~  319 (412)
T TIGR02332       244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL----KERKHHTALPYLF  319 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc----CccHHHHHHHHHH
Confidence            44455556554443 3455677888876 2467788888877777777666 67899999996    2344444344333


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011112           90 SLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYA  169 (493)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l  169 (493)
                      ..++..+ ....+  +.. .......+.++|.....+.......|..   |+++|+.+.|+.+....+|..++|.+.|.+
T Consensus       320 ~~~~~~~-~~~~~--~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i  392 (412)
T TIGR02332       320 AAAGWLL-ASATD--HNL-IQLLGIIMASMGSFSAMAIFWTTPDQSI---SLQARAIAIAVINATGNIGSALSPFLIGIL  392 (412)
T ss_pred             HHHHHHH-HHhcC--CHH-HHHHHHHHHHHHhhhhhhHHHhhccccc---chHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence            3333322 22221  111 1112222223333222222222223333   568999999999999999999999999999


Q ss_pred             hcccc-HHHHHHHHHHH
Q 011112          170 LTNIE-IDRIFLLFTVL  185 (493)
Q Consensus       170 ~~~~g-w~~~f~~~~~~  185 (493)
                      .++.| |++.|++.++.
T Consensus       393 ~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       393 KDATGSFNSGLWFVAAL  409 (412)
T ss_pred             cccCCCCchhHHHHHHH
Confidence            99875 99998876643

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.76  E-value=5.3e-08  Score=97.45  Aligned_cols=129  Identities=22%  Similarity=0.232  Sum_probs=98.1

Q ss_pred             eeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeeh
Q 011112          317 YQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYG  396 (493)
Q Consensus       317 ~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~  396 (493)
                      +..+++|.|..+.+++.....++..++.++.|++.||+|+|+.+..+.++..++.+... +.         ++.+..+..
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~---------~~~~~~~~~   91 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-FA---------SNFWLLLIA   91 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-HH---------CCHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-hh---------hhHHHHhhh
Confidence            44567999999999998888999999999999999999999999988888877633222 11         112222222


Q ss_pred             hHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          397 SALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      ..+.+...+........++.+..|+++|++.+++.+...++|..+++.+++.+.+.+|+
T Consensus        92 ~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~  150 (352)
T PF07690_consen   92 RFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW  150 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH
T ss_pred             ccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc
Confidence            23333443444555578899999999999999999999999999999999999877664

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.76  E-value=3.8e-06  Score=84.98  Aligned_cols=171  Identities=18%  Similarity=0.244  Sum_probs=112.6

Q ss_pred             HHHHHHHHHhHH-HhHHHHHHHHHHhh-hCCCHhhHHHHHHHHHhhHh--h-hhhhhhcccccccCCCCchhHHHHHHHH
Q 011112           15 LICLIYFTQGFR-SFVWTAVSYQLKDK-LKFSPSASQFVSAVAFFPWS--I-KPLYGILSDCIPIKGRKRIPYLVISTVL   89 (493)
Q Consensus        15 ~~~~~~f~~g~~-~~~~~~~~~~l~~~-~g~s~~~~g~~~s~~~l~~~--~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l   89 (493)
                      +++...|+.-+. +=  +.+.||+.+. .|.+.+|+..=+ .....|+  . -.+...+.|..     |.||.++++.+.
T Consensus         9 llc~~gf~~~frPsE--Pfl~~yL~~~~kn~T~~qv~~~i-~Pv~tYSyl~~l~~vflltd~l-----~Ykpviil~~~~   80 (412)
T PF01770_consen    9 LLCLFGFFKEFRPSE--PFLTPYLTGPDKNFTEEQVNNEI-YPVWTYSYLAFLLPVFLLTDYL-----RYKPVIILQALS   80 (412)
T ss_pred             HHHHHHHHHhcCCCC--ccchHHHcCCccCCCHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHH
Confidence            344445776664 22  2345677775 899999876421 1122332  2 45678999974     789999998887


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011112           90 SLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYA  169 (493)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l  169 (493)
                      .++...++.+.+    +...+-++-+.-|+..+. ++++.+++=...   |+++.-++.+....+..+|-.++.++|-.+
T Consensus        81 ~i~t~~lll~~~----sv~~mq~~q~~yg~~~a~-evay~sYiys~v---~~~~yq~vts~~raa~l~g~~~s~~lgQll  152 (412)
T PF01770_consen   81 YIITWLLLLFGT----SVLAMQLMQFFYGLATAA-EVAYYSYIYSVV---DKEHYQKVTSYTRAATLVGRFISSLLGQLL  152 (412)
T ss_pred             HHHHHHHHHHHC----cHHHHHHHHHHHHHHHHH-HHHHHHHheeec---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777666554    455555666666666544 566666654444   557777888998899999989998888877


Q ss_pred             hc--cccHHHHHHHHHHHHHHHHHHhhccccccc
Q 011112          170 LT--NIEIDRIFLLFTVLPAIQLLSCGLVKENRV  201 (493)
Q Consensus       170 ~~--~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~  201 (493)
                      ..  +.+++...++......+.++..+++|.+++
T Consensus       153 vs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  153 VSFGGVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            65  456777777666544444455567776554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.75  E-value=9.1e-07  Score=92.69  Aligned_cols=171  Identities=20%  Similarity=0.159  Sum_probs=118.4

Q ss_pred             HhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhh--
Q 011112           23 QGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGL--   99 (493)
Q Consensus        23 ~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~--   99 (493)
                      +|+..+.... ..|-++++|++.++...+.-+..+.... ..++|++.||+   |.++|+.++.+.++..+..+.-.+  
T Consensus       295 dg~~ti~~~~-~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~---g~k~~~~l~~~l~~~~~i~~~g~~G~  370 (477)
T PF11700_consen  295 DGVNTIISFA-GIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF---GPKTKRTLLISLILWIIIPLYGLFGF  370 (477)
T ss_pred             HHHHHHHHHH-HHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            6666554444 3466778999999977655555555555 67899999997   334346776666655333222111  


Q ss_pred             cccc--hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc-HH
Q 011112          100 NAFF--RSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIE-ID  176 (493)
Q Consensus       100 ~~~~--~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~g-w~  176 (493)
                      .++.  ..+-+.+.++-++.|+..+...+...++.+++.|   +++.+..+|++....-..+.+||.+-|.+.+..| .|
T Consensus       371 ~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP---~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r  447 (477)
T PF11700_consen  371 WPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIP---PGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQR  447 (477)
T ss_pred             hhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCC---CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence            1110  1133445566667788888888899999999995   4778999999999999999999999999998776 78


Q ss_pred             HHHHHHHHHHHHHHHHhhcccccc
Q 011112          177 RIFLLFTVLPAIQLLSCGLVKENR  200 (493)
Q Consensus       177 ~~f~~~~~~~~l~~i~~~~~~e~~  200 (493)
                      +.+....++.++.+++.+++++++
T Consensus       448 ~g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  448 YGFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             hHHHHHHHHHHHHHHHHhhccchh
Confidence            888776666555555555666544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.75  E-value=4.3e-08  Score=103.24  Aligned_cols=136  Identities=13%  Similarity=0.060  Sum_probs=96.0

Q ss_pred             CCcceeeeeecc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHhhhhhhheeccccccC
Q 011112          310 LSTVMFYYQTEI--LNLEASFLGTARVVGWVGLMLGTYTYNGYLKR-LKLRRILLLTQVGLSILSFLDIVLVSRMNLTVG  386 (493)
Q Consensus       310 ~~~~~~~~~~~~--~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~-~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g  386 (493)
                      ..+.++.|+++.  +|+|..+.|.+.....++..++.+++|++.|| +|+|+++..+.++..++.+.. ....       
T Consensus        29 ~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~-~~~~-------  100 (475)
T TIGR00924        29 MQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML-AMSI-------  100 (475)
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHH-Hhcc-------
Confidence            344456676665  89999999999888888899999999999999 899999999988877764321 1111       


Q ss_pred             ccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCc---hHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          387 ISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGI---EGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                       ....+.++ ..+.....+....+..+++++..|+++   |++++++++...|+|..+|+.+++.+.+.+|+
T Consensus       101 -~~~~~~~~-~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~  170 (475)
T TIGR00924       101 -YPDLIFYG-LGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGY  170 (475)
T ss_pred             -cHhHHHHH-HHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence             11111111 111222222222334567888888654   88899999999999999999999999887654

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.74  E-value=7.7e-07  Score=88.34  Aligned_cols=162  Identities=16%  Similarity=0.095  Sum_probs=111.2

Q ss_pred             hhchhHHHHHHHHHHH-HhHHHhHHHHHHHHHHh--hhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhH
Q 011112            7 VFGVSFLWLICLIYFT-QGFRSFVWTAVSYQLKD--KLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPY   82 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~-~g~~~~~~~~~~~~l~~--~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~   82 (493)
                      .++++.+++..+..|+ .|...-.....+.|+++  ++|.++++.+...+.+...+.+ +.+.++++||+     ++|+.
T Consensus       136 ~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-----g~~~~  210 (310)
T TIGR01272       136 AFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-----SQGRY  210 (310)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CHHHH
Confidence            3555566644444444 33444445666778774  3799999999988888888877 68899999996     45556


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHH
Q 011112           83 LVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICG  162 (493)
Q Consensus        83 ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg  162 (493)
                      +..+..+.+++.++....+.    . .......+.+++.+...+...++..+..+    ++.+.+.++. ....+|..++
T Consensus       211 l~~~~~l~~~~~~l~~~~~~----~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~----~~~~~asai~-~~~~~Gg~i~  280 (310)
T TIGR01272       211 LAFNAFLAVLLSIGAALTHG----Y-VAMWFVLALGLFNSIMFPTIFSLALNALG----RHTSQGSGIL-CLAIVGGAIV  280 (310)
T ss_pred             HHHHHHHHHHHHHHHHHcCC----H-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhhhhHHHH-HHHHhcchHH
Confidence            66776666666554444331    1 12234446788888888887887777654    3344455554 5677999999


Q ss_pred             HHHHHHhhccccHHHHHHHHH
Q 011112          163 SLLGGYALTNIEIDRIFLLFT  183 (493)
Q Consensus       163 ~~i~g~l~~~~gw~~~f~~~~  183 (493)
                      |.+.|.+.|+.|.+..|++..
T Consensus       281 P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       281 PLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHHHHHHHhccchHHHHHHH
Confidence            999999999999998887544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.73  E-value=1.1e-07  Score=96.18  Aligned_cols=130  Identities=18%  Similarity=0.156  Sum_probs=94.8

Q ss_pred             eeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEe
Q 011112          314 MFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMV  393 (493)
Q Consensus       314 ~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~  393 (493)
                      .+.+.++++|+|+.+.++......++..++.++.+++.||+|+|+.+..+.++..++.+... ...        ++.+..
T Consensus        24 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~-~~~--------~~~~~~   94 (366)
T TIGR00886        24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG-LAV--------QSYSVL   94 (366)
T ss_pred             hhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHh--------hhHHHH
Confidence            34345677999999999998889999999999999999999999999998888777643321 111        011111


Q ss_pred             eehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhh
Q 011112          394 LYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSL  453 (493)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~  453 (493)
                      +....+.... ...+.+...++.+..|+++|++..++.....++|..+++.+++.+.+.+
T Consensus        95 ~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~  153 (366)
T TIGR00886        95 LLLRLFIGIA-GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL  153 (366)
T ss_pred             HHHHHHHHHh-chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            1112222222 2234455678899999999999999999999999999999888777643

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.73  E-value=3.5e-07  Score=94.14  Aligned_cols=147  Identities=18%  Similarity=0.221  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhhCCCHhhHHHHHHHHHhhHh-hhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 011112           31 TAVSYQLKDKLKFSPSASQFVSAVAFFPWS-IKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWH  109 (493)
Q Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~-~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~  109 (493)
                      ...|.++++. +.++.+.+...++...... .....+.+.||.    .+.++.+..+..+..++.+.++..+    +.+.
T Consensus       229 ~~~p~~~~~~-~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r----~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~  299 (400)
T PRK11646        229 LMLPIMVNDI-AGSPSAVKWMYAIEACLSLTLLYPIARWSEKR----FRLEHRLMAGLLIMSLSMFPIGMVS----NLQQ  299 (400)
T ss_pred             HhhhhhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHHHHhh----hHHH
Confidence            3445566654 4477888877666554433 343445666641    2334445666666666666555543    2344


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc---cH-HHHHHHHHHH
Q 011112          110 LIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI---EI-DRIFLLFTVL  185 (493)
Q Consensus       110 l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~---gw-~~~f~~~~~~  185 (493)
                      ..+..++.+.+.+...+..++++.|..   |+++||+++|+.+....+|..+||.++|++.++.   ++ ...+...+++
T Consensus       300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~---p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~  376 (400)
T PRK11646        300 LFTLICLFYIGSIIAEPARETLSASLA---DARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGII  376 (400)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHhcC---CcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHH
Confidence            445556667777777777778888877   4599999999999999999999999999999864   22 4445444444


Q ss_pred             HHHH
Q 011112          186 PAIQ  189 (493)
Q Consensus       186 ~~l~  189 (493)
                      .++.
T Consensus       377 ~~~~  380 (400)
T PRK11646        377 GLIT  380 (400)
T ss_pred             HHHH
Confidence            3333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.73  E-value=3.7e-07  Score=96.02  Aligned_cols=158  Identities=13%  Similarity=0.055  Sum_probs=100.9

Q ss_pred             HHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhccc-chhhHHHHHH
Q 011112           35 YQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAF-FRSSTWHLIV  112 (493)
Q Consensus        35 ~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~-~~~~~~~l~~  112 (493)
                      |.+.++.|.+....++......+...+ .++.|+++||+     +||+.++.+.++.+++.++++.... ..... ....
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~-~~~~  368 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-----GRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALL  368 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-----cChHHHHHhHHHHHHHHHHHHHHHhcCcccH-HHHH
Confidence            344456888877666554444444444 68899999995     5777888888877777666654321 11111 1222


Q ss_pred             HHHHHHhhhhh-HHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHH------HhhccccHHHHHHHHHHH
Q 011112          113 LLTAQNLGSAM-ADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGG------YALTNIEIDRIFLLFTVL  185 (493)
Q Consensus       113 ~~~l~~~~~~~-~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g------~l~~~~gw~~~f~~~~~~  185 (493)
                      ..++.+++.+. ..+...+++.|..   |+++|+++.|+......+|.++++.+.+      ++.++.+|++.|++.+++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  445 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIF---PNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM  445 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhC---ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHH
Confidence            22233333322 1245678888887   4589999999999999888888755544      445678899999888876


Q ss_pred             HHHHHHHh-hccccccc
Q 011112          186 PAIQLLSC-GLVKENRV  201 (493)
Q Consensus       186 ~~l~~i~~-~~~~e~~~  201 (493)
                      .++..+.. ++.||++.
T Consensus       446 ~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        446 GVLAALFMWKFVPETKG  462 (479)
T ss_pred             HHHHHHHHHhccccCCC
Confidence            66655544 45677654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.69  E-value=6.1e-07  Score=104.73  Aligned_cols=173  Identities=16%  Similarity=0.107  Sum_probs=118.5

Q ss_pred             hchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      .+.+.++.+.+.++...+. +.....++.|+++.+|.+..+.|++.+.+.++..+ +++.|+++|+.     .+++.+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-----~~~~~~~~  296 (1140)
T PRK06814        222 KADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-----ITLLYVPI  296 (1140)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eeeeeehH
Confidence            4455555555555444443 34445677888888999999999999888888877 78899999863     23334444


Q ss_pred             HHHHHHHHHHHHhhccc----------------chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHH
Q 011112           86 STVLSLVPWLILGLNAF----------------FRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQS  149 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~----------------~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g  149 (493)
                      +.++..++.+.+.+...                ...+.+.+.+..++.+++.+...++..+++.+.+   |+++||+++|
T Consensus       297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~~G~v~g  373 (1140)
T PRK06814        297 GALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWA---NPAHRARVIA  373 (1140)
T ss_pred             HHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhC---CcccceeeeH
Confidence            44443333333332100                0023455566677778888888888888888877   5699999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHH
Q 011112          150 LSWLAMAFGGICGSLLGGYALT-NIEIDRIFLLFTVLPAI  188 (493)
Q Consensus       150 ~~~~~~~~G~~lg~~i~g~l~~-~~gw~~~f~~~~~~~~l  188 (493)
                      ..+....+|..+|++++|.+.+ ..+++..+++.+++.++
T Consensus       374 ~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        374 ANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            9999999999999999999874 55777777665544333

>TIGR00895 2A0115 benzoate transport

Probab=98.67  E-value=9.7e-07  Score=89.81  Aligned_cols=129  Identities=19%  Similarity=0.121  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhh
Q 011112           28 FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSS  106 (493)
Q Consensus        28 ~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~  106 (493)
                      ......+ ++.+++|.+..+.+...+...+...+ .+++|+++||+     +||+.+.................+    +
T Consensus       268 ~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~  337 (398)
T TIGR00895       268 FLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-----GPRVTALLLLLGAVFAVLVGSTLF----S  337 (398)
T ss_pred             HHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----chHHHHHHHHHHHHHHHHHHHHhh----C
Confidence            3334444 55667999999999888777777666 78999999995     455444433333333322222122    2


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011112          107 TWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYA  169 (493)
Q Consensus       107 ~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l  169 (493)
                      .+...+..++.+++.+...+...+++.|..   |+++|+++.|+......+|..+||.++|++
T Consensus       338 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       338 PTLLLLLGAIAGFFVNGGQSGLYALMALFY---PTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            334556667778888888888889988887   458999999999999999999999999976

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.67  E-value=9.1e-07  Score=103.33  Aligned_cols=167  Identities=16%  Similarity=0.124  Sum_probs=116.0

Q ss_pred             chhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHh-hHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            9 GVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPS-ASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~-~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      +.+.++...+..++..+. ......+++++++++|.+.. +.|++.+...++..+ .+++|+++||+     ++++.+.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-----~~~~~~~~  304 (1146)
T PRK08633        230 SDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-----IELGLVPL  304 (1146)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----eEccchhH
Confidence            444444333333333332 34455667788888999998 889888888777766 68899999984     34555666


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +.++.+++.+++.+.+    +.+.+++..++.+++.+...++.++++.+..   |+++||+++|..+....+|..+++.+
T Consensus       305 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~rg~~~~~~~~~~~lg~~~~~~~  377 (1146)
T PRK08633        305 GALGLALSLFLLPTAP----SLASVLVLFFLFGFSAGLFIVPLNALIQFRA---PEKELGKVLAANNFLQNVGMLLFLAL  377 (1146)
T ss_pred             HHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC---CccchhhhhHHHHHHHHHHHHHHHHH
Confidence            6666666666555543    3445566667778888888778888888777   45899999999999999999888888


Q ss_pred             HHHhhc-cccHHHHHHHHHHHHH
Q 011112          166 GGYALT-NIEIDRIFLLFTVLPA  187 (493)
Q Consensus       166 ~g~l~~-~~gw~~~f~~~~~~~~  187 (493)
                      ++.+.. ..++...|++.+.+.+
T Consensus       378 ~~~l~~~~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        378 TTLFSGLGLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHH
Confidence            877654 2456666666554433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.67  E-value=1.9e-07  Score=95.69  Aligned_cols=126  Identities=13%  Similarity=0.083  Sum_probs=91.3

Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhH
Q 011112          319 TEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSA  398 (493)
Q Consensus       319 ~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~  398 (493)
                      .+++|.|+.+.++......++..++.++.|++.||+|+|+.+..+.++..++..... ..         ++....+....
T Consensus        30 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~-~~---------~~~~~~~~~~~   99 (392)
T PRK10473         30 AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS-LA---------ETSSLFLAGRF   99 (392)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH-Hh---------CcHHHHHHHHH
Confidence            455899999999988888889999999999999999999999988877766543221 11         11111111112


Q ss_pred             HHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          399 LVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      +.....+....+..+++.+..|+++|++..++.+...+++..++|.+++.+.+..|
T Consensus       100 l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g  155 (392)
T PRK10473        100 LQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP  155 (392)
T ss_pred             HHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            22222233344456788999999999999999999999999999999888876544

>PRK09848 glucuronide transporter; Provisional

Probab=98.66  E-value=8e-07  Score=92.90  Aligned_cols=162  Identities=15%  Similarity=0.095  Sum_probs=107.5

Q ss_pred             hhchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            7 VFGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      .++.+.+.......++.... .......+.++++.+|.+....+.......++..+ .|++++++||+     ++|+.+.
T Consensus       224 l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-----g~~~~~~  298 (448)
T PRK09848        224 LKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-----GKKNTFL  298 (448)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CcHHHHH
Confidence            34555555444444443332 22223344566767887665544433333344444 78999999995     5677777


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh----chhcchhHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSE----RAAFAGDLQSLSWLAMAFGGI  160 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~----~~~~rg~~~g~~~~~~~~G~~  160 (493)
                      .+.++..++.+.+.+.++  .+.+..++..++.++|.+...+...++..|..+.+    +.+++|...|..+....+|..
T Consensus       299 ~g~~~~~i~~~~~~~~~~--~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~a  376 (448)
T PRK09848        299 IGALLGTCGYLLFFWVSV--WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQA  376 (448)
T ss_pred             HHHHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHH
Confidence            787777777666655432  23445556667788898888889999999988532    124568889999999999999


Q ss_pred             HHHHHHHHhhccccH
Q 011112          161 CGSLLGGYALTNIEI  175 (493)
Q Consensus       161 lg~~i~g~l~~~~gw  175 (493)
                      +|+.+.+.+.+..||
T Consensus       377 ig~~i~g~~l~~~G~  391 (448)
T PRK09848        377 IGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999988765544

>TIGR00898 2A0119 cation transport protein

Probab=98.66  E-value=1.2e-06  Score=93.05  Aligned_cols=148  Identities=17%  Similarity=0.019  Sum_probs=101.2

Q ss_pred             hhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Q 011112           39 DKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQ  117 (493)
Q Consensus        39 ~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~  117 (493)
                      ++++.+......+.++   .... .++.++++||+     +||+.+..+.++..++.+.+.+.++.  ..+...+..++.
T Consensus       351 ~~~~~~~~~~~~~~~~---~~i~~~~~~~~l~dr~-----grr~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~  420 (505)
T TIGR00898       351 GNLGGNIYLDLFISGL---VELPAKLITLLLIDRL-----GRRYTMAASLLLAGVALLLLLFVPVD--LYFLRTALAVLG  420 (505)
T ss_pred             cccCCChHHHHHHHHH---HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHHcCCC--chHHHHHHHHHH
Confidence            3466665443333222   2222 56788999995     57777778877777777766665432  122333444555


Q ss_pred             HhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhccc
Q 011112          118 NLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVK  197 (493)
Q Consensus       118 ~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~  197 (493)
                      +++.+.......++..|..   |.+.|+.++|+......+|.+++|.+.+ + +..++...+.+.++..++..+..+++|
T Consensus       421 ~~~~~~~~~~~~~~~~e~~---p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lp  495 (505)
T TIGR00898       421 KFGITSAFQMVYLYTAELY---PTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLP  495 (505)
T ss_pred             HHHHHHHHHHHHHHhcccc---cHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCc
Confidence            5666666666778888888   4588999999999999999999999998 4 445667778877777666666667788


Q ss_pred             cccc
Q 011112          198 ENRV  201 (493)
Q Consensus       198 e~~~  201 (493)
                      |++.
T Consensus       496 et~~  499 (505)
T TIGR00898       496 ETKG  499 (505)
T ss_pred             CCCC
Confidence            8764

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.65  E-value=5.1e-07  Score=95.84  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=83.4

Q ss_pred             hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhch
Q 011112           62 KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERA  141 (493)
Q Consensus        62 ~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~  141 (493)
                      .+++++++||+     +||+.++.+..+..++..+++...+.......+....+...+......+....+..|+.   |.
T Consensus       352 ~~~~~~l~dr~-----gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~---p~  423 (502)
T TIGR00887       352 YWVTVFLVDII-----GRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF---PT  423 (502)
T ss_pred             HHHHHHHhhhh-----cchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC---ch
Confidence            46789999995     56777767766666555544432111001111111111111211112233456667887   55


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHhhcc----------ccHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011112          142 AFAGDLQSLSWLAMAFGGICGSLLGGYALTN----------IEIDRIFLLFTVLPAIQLLSCGLVKENRVS  202 (493)
Q Consensus       142 ~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~----------~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~  202 (493)
                      +.|++..|+......+|..+++.+.+++.+.          .++...|++.+++.++..+..+++||++..
T Consensus       424 ~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~  494 (502)
T TIGR00887       424 RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGK  494 (502)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCC
Confidence            9999999999999999999999999999873          345667777776666555555678987653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.65  E-value=9.4e-07  Score=93.67  Aligned_cols=156  Identities=17%  Similarity=0.149  Sum_probs=110.3

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++.+.........+..++.. -.....+.++++.+|.|+.+.|.......+...+ .++.|++.||+     +||+.+..
T Consensus       256 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-----g~~~~~~~  330 (495)
T PRK14995        256 FTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-----GLRLVATG  330 (495)
T ss_pred             hCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHHHH
Confidence            34444443334444433321 2233556688888999999999887777777666 78999999995     45667777


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +.++.+++...+..... +.+.+......++.|+|.+...++....+.+..   |+++++.+.++.+....+|..+|+.+
T Consensus       331 g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~lG~~~G~ai  406 (495)
T PRK14995        331 GMALSALSFYGLAMTDF-STQQWQAWGLMALLGFSAASALLASTSAIMAAA---PPEKAAAAGAIETMAYELGAGLGIAI  406 (495)
T ss_pred             HHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcC---CHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            77777666655544321 123344456677888888888777777777765   56899999999999999999999999


Q ss_pred             HHHhhcc
Q 011112          166 GGYALTN  172 (493)
Q Consensus       166 ~g~l~~~  172 (493)
                      .|.+.++
T Consensus       407 ~g~i~~~  413 (495)
T PRK14995        407 FGLLLSR  413 (495)
T ss_pred             HHHHHHH
Confidence            9998764

>PRK11043 putative transporter; Provisional

Probab=98.59  E-value=4.5e-07  Score=93.13  Aligned_cols=127  Identities=16%  Similarity=0.127  Sum_probs=90.2

Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhH
Q 011112          319 TEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSA  398 (493)
Q Consensus       319 ~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~  398 (493)
                      .+++|.|+.+.|+......++..++.++.+++.||+++|+.+..+..+..+..+.. ...         ++....+....
T Consensus        33 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~---------~~~~~l~~~~~  102 (401)
T PRK11043         33 QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM-LWV---------ESAAQLLVLRF  102 (401)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH-HHh---------cCHHHHHHHHH
Confidence            45689999999999888999999999999999999999999988877666543321 111         11111111111


Q ss_pred             HHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          399 LVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      +.............+++.+..|+++++..++..+...+++..++|.+++.+.+.+|+
T Consensus       103 l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~  159 (401)
T PRK11043        103 VQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGW  159 (401)
T ss_pred             HHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence            111111122222356788899999999999999988999999999999999887653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.58  E-value=3e-06  Score=87.92  Aligned_cols=185  Identities=13%  Similarity=0.031  Sum_probs=107.3

Q ss_pred             hhhhhhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHh-hhhhhhhcccccccCCCCch
Q 011112            3 QLKNVFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS-IKPLYGILSDCIPIKGRKRI   80 (493)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~-~~~~~G~lsDr~~~~g~~rr   80 (493)
                      +..+.++.+..|.+++.|+...-.. -....+|.++++++.  .........+..+... .+|+.|+++||+     ++|
T Consensus       244 ~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-----G~~  316 (462)
T PRK15034        244 DQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-----GGV  316 (462)
T ss_pred             HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-----Cch
Confidence            3445678888998888887633222 233456677777553  3322221222233333 489999999996     455


Q ss_pred             hHHHHHHHHHHHHHHHH-hhccc-chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh------------------c
Q 011112           81 PYLVISTVLSLVPWLIL-GLNAF-FRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSE------------------R  140 (493)
Q Consensus        81 ~~ii~~~~l~~~~~~~~-~~~~~-~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~------------------~  140 (493)
                      +.+.++.+...++.... ...+. .+.+.+.+.+..+...++.+...-....++.++.+++                  .
T Consensus       317 ~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~  396 (462)
T PRK15034        317 RVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREA  396 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHH
Confidence            66666665555544322 22221 1223444444443333333343334556666666420                  0


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHHHHHHhh
Q 011112          141 AAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI-EIDRIFLLFTVLPAIQLLSCG  194 (493)
Q Consensus       141 ~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~-gw~~~f~~~~~~~~l~~i~~~  194 (493)
                      .++-|.+.|+......+|+.+-|.+-|...+.. ++...|+...+..+++.++..
T Consensus       397 ~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        397 VTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            126778888888899998888887777776654 478888887777666665443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.57  E-value=3.1e-06  Score=79.96  Aligned_cols=136  Identities=12%  Similarity=0.116  Sum_probs=97.3

Q ss_pred             HHHHhhhCCCHhhHHHHHHHHHh-hHhhhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHH
Q 011112           35 YQLKDKLKFSPSASQFVSAVAFF-PWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVL  113 (493)
Q Consensus        35 ~~l~~~~g~s~~~~g~~~s~~~l-~~~~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  113 (493)
                      .+.++++|.|+.+.+.+.+.... ....+|+.|.++||+    .++..|+..+.+++.++-..+.++.      +.=.+.
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~----G~n~~wv~~a~~~tl~~H~~l~Ft~------lsPy~~  358 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY----GFNLWWVASACILTLLGHSGLFFTF------LSPYTS  358 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh----cceehhHHHHHHHHHHHhhhHHhhh------ccHHHH
Confidence            35578899999999887775544 444589999999996    2444556566666666655444432      111244


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc---HHHHHHHHH
Q 011112          114 LTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIE---IDRIFLLFT  183 (493)
Q Consensus       114 ~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~g---w~~~f~~~~  183 (493)
                      ..+.|+.+....+...-+++.+.+   +++.|.+.|..+..+++|-.+-+++.|.+.|+-|   |-..|.+.-
T Consensus       359 m~~lGLsysllAcslWP~va~~vp---E~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~  428 (459)
T KOG4686|consen  359 MTFLGLSYSLLACSLWPCVASLVP---EEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII  428 (459)
T ss_pred             HHHHhhhHHHHHHHHhhhhhhhCC---HHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence            456677777777767777777774   5999999999999999999999999999998654   444454433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.56  E-value=2.8e-07  Score=97.31  Aligned_cols=133  Identities=14%  Similarity=0.019  Sum_probs=90.8

Q ss_pred             eeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceE
Q 011112          314 MFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKR-LKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTM  392 (493)
Q Consensus       314 ~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~-~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~  392 (493)
                      +..|+++++|++..+.+.+.........+..+++|++.|| +|+||++..+.++..++.++.. +..  +     +...+
T Consensus        37 l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~-~~~--~-----~~~ll  108 (489)
T PRK10207         37 LAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG-MSL--L-----KPDLI  108 (489)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-Hhc--c-----chhHH
Confidence            4456667799999888776555555555566789999999 9999999999999888754322 111  0     01111


Q ss_pred             eeehhHHHHHHHHhhHhHHHHHHhhcCCCCc--hHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          393 VLYGSALVDAVNQFKFMPFLILSGQLCPPGI--EGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      ++ .-.+.....+.......+++.|.+|++.  |+..+++++...|+|..+||.++|.+.+.+|+
T Consensus       109 ~~-~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw  172 (489)
T PRK10207        109 FI-ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGY  172 (489)
T ss_pred             HH-HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhCh
Confidence            11 1112222222222334678999998774  57789999999999999999999999987653

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.55  E-value=1.5e-06  Score=91.65  Aligned_cols=178  Identities=12%  Similarity=0.140  Sum_probs=130.0

Q ss_pred             chhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +.+..+.+++...+..+.. .+...++++.+ ..|.+.++.+...++......+ .+++|+++|+.+   .+++....++
T Consensus       296 ~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~---~~~~~~~~~~  371 (509)
T KOG2504|consen  296 KDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG---IRALVLFLLT  371 (509)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc---cchHHHHHHH
Confidence            3334443444444444433 45556667755 6999999999999988887777 799999999852   2344455566


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      .+...++.+.+.+.+    +++.+...-.+.|++.+.......-.+.|+..   .++...+.|+...+..++.++||.+.
T Consensus       372 ll~~gl~~~~~p~~~----~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g---~~~l~~a~Gl~l~~~gi~~l~gpPia  444 (509)
T KOG2504|consen  372 LLIAGLARLFLPFAT----TYVGLIVFSILFGFCVGSFSSLTPVILVDLVG---LEKLSNAYGLLLLFQGIGALVGPPIA  444 (509)
T ss_pred             HHHHHHHHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---hhhcchHHHHHHHHhHHHHHcCcccc
Confidence            666666665555554    45666666667788777776666567778774   58888999999999999999999999


Q ss_pred             HHhhcccc-HHHHHHHHHHHHHHHHHHhhccc
Q 011112          167 GYALTNIE-IDRIFLLFTVLPAIQLLSCGLVK  197 (493)
Q Consensus       167 g~l~~~~g-w~~~f~~~~~~~~l~~i~~~~~~  197 (493)
                      |++.|..+ |...|+.+++..++....++..+
T Consensus       445 g~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  445 GLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99998777 99999999987777776666666

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.55  E-value=4.6e-07  Score=96.07  Aligned_cols=159  Identities=16%  Similarity=0.053  Sum_probs=96.8

Q ss_pred             hcccc-hHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhHHHHHHHH
Q 011112          288 FRQPE-ILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKR-LKLRRILLLTQV  365 (493)
Q Consensus       288 l~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~-~~~r~~l~~~~~  365 (493)
                      +|+|+ ++..+...++....+.......+.|+++++|+|..+.+..............+++|++.|| +|+|+.+..+.+
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~   96 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI   96 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            35554 4444433333333333333445667777799998887766544443444445688999999 599999999988


Q ss_pred             HHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCc--hHHHHHHHHHHHhhhhhhhH
Q 011112          366 GLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGI--EGTLFALFMSISNFGSTVGS  443 (493)
Q Consensus       366 ~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~gt~~gl~~~~~~lg~~~~~  443 (493)
                      +..++.... ....        ...........+.....+.......+++.+..|++.  ++.++++++...++|..+||
T Consensus        97 ~~~ig~~l~-~~~~--------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp  167 (500)
T PRK09584         97 VLAIGYALV-AWSG--------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSM  167 (500)
T ss_pred             HHHHHHHHH-HHhc--------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHH
Confidence            877654322 1111        111111111112222223323334567888887643  45678899999999999999


Q ss_pred             hHHHHhHHhhcC
Q 011112          444 FFGAGLASSLSI  455 (493)
Q Consensus       444 ~i~g~l~~~~g~  455 (493)
                      .++|.+.+.+|+
T Consensus       168 ~i~g~l~~~~g~  179 (500)
T PRK09584        168 LATPWLAAKYGW  179 (500)
T ss_pred             HHHHHHHHhhCH
Confidence            999999987654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.55  E-value=3.3e-07  Score=95.96  Aligned_cols=133  Identities=14%  Similarity=0.053  Sum_probs=93.2

Q ss_pred             eeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceE
Q 011112          314 MFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRL-KLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTM  392 (493)
Q Consensus       314 ~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~-~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~  392 (493)
                      ++.|+.+.+|+|+.+.+.+.........++.+++|++.||+ |+||.+.++.++..++.+. +....       .....+
T Consensus        32 L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~ll-l~~~~-------~~~~~~  103 (493)
T PRK15462         32 LILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVV-LGASE-------IHPSFL  103 (493)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHH-HHHhh-------cchhHH
Confidence            45566667899999999887777788888899999999998 9999999998887766432 11100       000111


Q ss_pred             eeehhHHHHHHHHhhHhHHHHHHhhcCCCC--chHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          393 VLYGSALVDAVNQFKFMPFLILSGQLCPPG--IEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      .+.... .....+.......+++.|.+|++  .|.++++++....|+|..++|.+.+.+.+.+|+
T Consensus       104 ~l~l~l-i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw  167 (493)
T PRK15462        104 YLSLAI-IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSW  167 (493)
T ss_pred             HHHHHH-HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhCh
Confidence            111111 11111222222456789999876  699999999999999999999999999887664

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.54  E-value=5e-06  Score=85.40  Aligned_cols=139  Identities=12%  Similarity=0.036  Sum_probs=95.7

Q ss_pred             HHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHH
Q 011112           31 TAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWH  109 (493)
Q Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~  109 (493)
                      ...++++++.+|.++.+.|...+...++..+ +++.+.+.||.     ++|+.+..+... .+..+.+...+    +.+.
T Consensus       226 ~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-----~~~~~~~~g~~~-~~~~~~~~~~~----~~~~  295 (393)
T PRK11195        226 FLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-----TVLRVLPAGILM-GLVVLLMALQH----SLLP  295 (393)
T ss_pred             HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-----cccchHHHHHHH-HHHHHHHHHHh----HHHH
Confidence            3345677888999999999988888887776 67888998873     444555555433 33333333322    3444


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhc-chhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Q 011112          110 LIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAF-AGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFT  183 (493)
Q Consensus       110 l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~-rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~  183 (493)
                      ..+..++.+++.+...++.++.+.+..   |+++ +|++.+..+...++|..++..+.+.+ +..|-|..+.+.+
T Consensus       296 ~~~~~~~~G~~~g~~~~~~~~~~q~~~---~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  366 (393)
T PRK11195        296 AYPLLILIGALGGFFVVPMNALLQHRG---HVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVG  366 (393)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHhhC---cccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHH
Confidence            556666778888887777777766643   2343 79999999999999999999999866 4556555555444

>PRK10133 L-fucose transporter; Provisional

Probab=98.52  E-value=5e-06  Score=86.66  Aligned_cols=139  Identities=9%  Similarity=-0.053  Sum_probs=98.9

Q ss_pred             HHHHHHH-HhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHH
Q 011112           31 TAVSYQL-KDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTW  108 (493)
Q Consensus        31 ~~~~~~l-~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~  108 (493)
                      ...++++ ++++|.|+.+.+.....+..++.+ +++.|+++||+     +||+.+..+..+.++..++..+.++    . 
T Consensus       279 ~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-----g~~~~l~~~~~~~~~~~~~~~~~~~----~-  348 (438)
T PRK10133        279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVLAAYALIAMALCLISAFAGG----H-  348 (438)
T ss_pred             HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHcCC----h-
Confidence            3445564 567899999999988888888877 68999999995     5566666666665555444444332    1 


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc-HHHHHHHHHH
Q 011112          109 HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIE-IDRIFLLFTV  184 (493)
Q Consensus       109 ~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~g-w~~~f~~~~~  184 (493)
                      ..+....+.+++.+...+...+...+..+    ++.+.+.++.. ...+|..+++.+.|.+.+..| -|..|++..+
T Consensus       349 ~~~~~~~l~glg~~~i~P~~~s~a~~~~~----~~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~  420 (438)
T PRK10133        349 VGLIALTLCSAFMSIQYPTIFSLGIKNLG----QDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL  420 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccc----hhhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            12345567789999998888888877653    34556666665 455788889999999999887 7888876553

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.52  E-value=1.3e-06  Score=90.46  Aligned_cols=151  Identities=15%  Similarity=0.125  Sum_probs=101.6

Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhH
Q 011112          319 TEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSA  398 (493)
Q Consensus       319 ~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~  398 (493)
                      .+++|.|..+.+.......++..++.++.|++.||+|+|+.+..+.++..++.+.. ...         ++....+..-.
T Consensus        43 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~-~~a---------~~~~~l~~~r~  112 (413)
T PRK15403         43 VRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT-LFT---------TSMTQFLIARF  112 (413)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH-HHc---------CCHHHHHHHHH
Confidence            35589999888888777788888999999999999999999998877776654322 111         11111111112


Q ss_pred             HHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhh
Q 011112          399 LVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPI  478 (493)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  478 (493)
                      +.............+.+.+..|++++++.+++.++..+++..+|+.+++.+.+.+|+        ...+.+.+++.++..
T Consensus       113 l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw--------~~~f~~~~~~~~i~~  184 (413)
T PRK15403        113 IQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHW--------KVLFAIIAVMGLIAF  184 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHH
Confidence            222222222222346678889999999999999999999999999999998876543        334455555555554


Q ss_pred             hhh-hcccCC
Q 011112          479 AFL-FLIPKG  487 (493)
Q Consensus       479 ~~~-~~l~~~  487 (493)
                      +.. +.+||+
T Consensus       185 ~~~~~~lp~~  194 (413)
T PRK15403        185 VGLLLAMPET  194 (413)
T ss_pred             HHHHHhCCCC
Confidence            433 456764

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.52  E-value=1.2e-05  Score=82.64  Aligned_cols=159  Identities=18%  Similarity=0.141  Sum_probs=106.0

Q ss_pred             hchhHHHHHHHHHHHHhH-HHhHHHHHHHHHHhhhC-CCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            8 FGVSFLWLICLIYFTQGF-RSFVWTAVSYQLKDKLK-FSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~-~~~~~~~~~~~l~~~~g-~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      ++.+..+...+..++.+. .+..+.....|+++ .| .+.+..|...++..+.=.. -.+.+.+..|     .+-|+.+.
T Consensus       204 lk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~-~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-----~g~~~ll~  277 (400)
T PF03825_consen  204 LKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQE-LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-----FGIKWLLL  277 (400)
T ss_pred             hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHH
Confidence            444445444455555554 35677777888876 66 6666666544443332111 1234555555     35677888


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHH----HHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHH-HHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIV----LLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAM-AFGG  159 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~-~~G~  159 (493)
                      ++.+..++=+.+++..+++   .+...+    .-.+.|+..+........++.+..   |++.|+++++++.... .+|.
T Consensus       278 ~a~~~~~vR~~l~a~~~~~---~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~---p~~~~at~Q~l~~~~~~Glg~  351 (400)
T PF03825_consen  278 LALVAYAVRWLLYAYFSDP---WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA---PPELRATAQGLYSALSFGLGG  351 (400)
T ss_pred             HHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC---CccchHHHHHHHHHHHhhHHH
Confidence            8888888877777766321   122222    234588888888888888888887   5589999999988764 6999


Q ss_pred             HHHHHHHHHhhccccHHHH
Q 011112          160 ICGSLLGGYALTNIEIDRI  178 (493)
Q Consensus       160 ~lg~~i~g~l~~~~gw~~~  178 (493)
                      .+|..++|+++|++|-+..
T Consensus       352 ~iG~~igG~l~~~~g~~~~  370 (400)
T PF03825_consen  352 AIGSLIGGWLYDAFGARGM  370 (400)
T ss_pred             HHHHHHHHHHHHHhcchhh
Confidence            9999999999998775543

>PRK09669 putative symporter YagG; Provisional

Probab=98.51  E-value=4.8e-06  Score=86.94  Aligned_cols=163  Identities=15%  Similarity=0.122  Sum_probs=98.2

Q ss_pred             hhhhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhH
Q 011112            5 KNVFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPY   82 (493)
Q Consensus         5 ~~~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~   82 (493)
                      ++.++.+.++.+...+++..... ........+.+..++ +++..+.+.....+...+ .+++++++||+     +||+.
T Consensus       223 ~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----gk~~~  296 (444)
T PRK09669        223 KLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-----DRVRA  296 (444)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHH
Confidence            33455555554555555543332 222222333333333 333333333333444444 57899999995     56666


Q ss_pred             HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh----chhcchhHHHHHHHHHHHH
Q 011112           83 LVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSE----RAAFAGDLQSLSWLAMAFG  158 (493)
Q Consensus        83 ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~----~~~~rg~~~g~~~~~~~~G  158 (493)
                      +..+.+..++..+...+.+.  ++.+.+++..++.+++.+...+...++++|..+.+    ..++.|...|.......+|
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg  374 (444)
T PRK09669        297 FKWTIVAFVILSALIFFIPP--SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLG  374 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHH
Confidence            66665554443333333321  23445566667788998888899999999988531    1234456778888899999


Q ss_pred             HHHHHHHHHHhhccccH
Q 011112          159 GICGSLLGGYALTNIEI  175 (493)
Q Consensus       159 ~~lg~~i~g~l~~~~gw  175 (493)
                      ..+|+.++|.+.+..|+
T Consensus       375 ~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        375 LAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999876655

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.51  E-value=8.3e-07  Score=91.05  Aligned_cols=153  Identities=13%  Similarity=0.052  Sum_probs=104.5

Q ss_pred             eeeeccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEee
Q 011112          316 YYQTEILNLEASF-LGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVL  394 (493)
Q Consensus       316 ~~~~~~~g~s~~~-~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l  394 (493)
                      .++.+++|+|+++ .|.+......+-.+..+..+.+.||+|.|+.+..+.+...+...+... ..        +...+. 
T Consensus        50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f-a~--------Sl~~L~-  119 (511)
T TIGR00806        50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL-GT--------SVWHMQ-  119 (511)
T ss_pred             HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HH--------HHHHHH-
Confidence            3555679999999 899988888899999999999999999999999998887765443221 10        100111 


Q ss_pred             ehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhh
Q 011112          395 YGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCT  474 (493)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  474 (493)
                      ..=++.++..+..+ +...++.+..|+++|+++.|+.++...+|..+++.+++. ...+|+.  +|   ..+..+.....
T Consensus       120 i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr--~y---~~Ln~Isl~s~  192 (511)
T TIGR00806       120 LMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWI--SY---STLNIISLVFM  192 (511)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCch--hH---HHHHHHHHHHH
Confidence            11112222222334 667889999999999999999999999999999999998 4445543  23   33333433333


Q ss_pred             hhhhhhhhccc
Q 011112          475 FIPIAFLFLIP  485 (493)
Q Consensus       475 ~~~~~~~~~l~  485 (493)
                      .++++..++||
T Consensus       193 ~~a~~~a~~LP  203 (511)
T TIGR00806       193 TFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHhCC
Confidence            44444445555

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.49  E-value=5e-05  Score=76.91  Aligned_cols=128  Identities=20%  Similarity=0.188  Sum_probs=81.2

Q ss_pred             HHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 011112           54 VAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMI  132 (493)
Q Consensus        54 ~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali  132 (493)
                      +-.+|..+ |..+-++.+|+|   ++.|.+  ....+.+++++..++.+    +.+.-++.-.+.+++.+..++.--++.
T Consensus        67 adi~P~l~~Kl~aP~fi~~v~---y~~Ri~--~~~~l~~~g~l~va~~~----~v~~~l~Gv~las~ssg~GE~tfL~lt  137 (402)
T PF02487_consen   67 ADILPSLLVKLIAPFFIHRVP---YWIRIL--ICVALSAAGMLLVAFSP----SVWVRLLGVVLASLSSGLGEVTFLSLT  137 (402)
T ss_pred             HHHHHHHHHHHHhHhhhhhcc---chHHHH--HHHHHHHHHHhheeecc----chhHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            34456654 777777888875   544433  33445666777777664    345556677778888888887777764


Q ss_pred             HHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHHHHHHhhc-ccc
Q 011112          133 AEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT-NIEIDRIFLLFTVLPAIQLLSCGL-VKE  198 (493)
Q Consensus       133 ~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~-~~gw~~~f~~~~~~~~l~~i~~~~-~~e  198 (493)
                      ... +     +  ...+-+..+...++++|+..-..+.+ ..+-|..++.+..++++..+..++ +|.
T Consensus       138 ~~y-~-----~--~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  138 HFY-G-----K--SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             Hhc-C-----c--cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            432 1     1  24566667777777888777655555 234577888888787777665443 443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.48  E-value=1.4e-05  Score=81.17  Aligned_cols=128  Identities=19%  Similarity=0.166  Sum_probs=72.7

Q ss_pred             HHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHH
Q 011112           32 AVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHL  110 (493)
Q Consensus        32 ~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l  110 (493)
                      ..++++.+++|.++++.|...+...+...+ .++.|+++||+     +||+.+..+..+..+..+.+......+...+..
T Consensus       216 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (377)
T PRK11102        216 AGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-----GALNMLRFGLWIQFIMGIWLVVSALLDLGFWAL  290 (377)
T ss_pred             cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            345566777899999999988877776665 78999999995     566666666554333322222111001123333


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHH-HHHHHHHHHHHHH
Q 011112          111 IVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAM-AFGGICGSLLGGY  168 (493)
Q Consensus       111 ~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~-~~G~~lg~~i~g~  168 (493)
                      .+...+...+.+.........+.|    +.++++|++++...... .+|..+|+.+++.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        291 VVGVAAFVGCVSMISSNAMAVILD----EFPHMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhc----cccccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333322222222222222223322    23588999999876653 4677777776654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.47  E-value=1.5e-06  Score=89.14  Aligned_cols=127  Identities=12%  Similarity=0.052  Sum_probs=88.4

Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhH
Q 011112          319 TEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSA  398 (493)
Q Consensus       319 ~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~  398 (493)
                      .+++|.|+.+.++......++..++.++.|++.||+|+|+.+..+.++..++.+.. ...         ++....+....
T Consensus        35 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~~---------~~~~~l~~~~~  104 (394)
T PRK11652         35 ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVA-LFA---------HSLTVLIAASA  104 (394)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH-HHH---------ccHHHHHHHHH
Confidence            45689999999999888899999999999999999999999988877776654322 111         11111111111


Q ss_pred             HHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          399 LVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      +.....+........+..+..++++++.+++..+....++..++|.+++.+.+..|+
T Consensus       105 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~  161 (394)
T PRK11652        105 IQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGW  161 (394)
T ss_pred             HHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            222211111112235667788888999999999888888999999999988876543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.46  E-value=2.8e-06  Score=88.27  Aligned_cols=161  Identities=19%  Similarity=0.241  Sum_probs=117.8

Q ss_pred             hhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            7 VFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      .++.+.+..+...++++.+.. +.+...+.+.+..+|.+ ...+.+..+..++..+ .|++++++||+     +||+.+.
T Consensus       221 ~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-----gk~~~~~  294 (428)
T PF13347_consen  221 LFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-----GKKKVYI  294 (428)
T ss_pred             hcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-----cceeehh
Confidence            355555555666677766653 55555666767777765 4556666666666555 79999999996     5677888


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh----chhcchhHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSE----RAAFAGDLQSLSWLAMAFGGI  160 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~----~~~~rg~~~g~~~~~~~~G~~  160 (493)
                      .+..+.+++.+++.+.+.  .+.+.+++...+.+++.+...+...++++|+.+.+    +.++.|...|......-+|..
T Consensus       295 ~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~  372 (428)
T PF13347_consen  295 IGLLLAALGFLLLFFLGP--GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQG  372 (428)
T ss_pred             hhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHH
Confidence            888888888887776652  24566777888889999999899999999988642    234567888888889999999


Q ss_pred             HHHHHHHHhhccccH
Q 011112          161 CGSLLGGYALTNIEI  175 (493)
Q Consensus       161 lg~~i~g~l~~~~gw  175 (493)
                      +++.+.+.+.+..|+
T Consensus       373 la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  373 LAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHHHHHHHHHHhCc
Confidence            999998888765443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.45  E-value=4.9e-06  Score=86.77  Aligned_cols=180  Identities=22%  Similarity=0.207  Sum_probs=116.5

Q ss_pred             hchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCC----CCchh
Q 011112            8 FGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKG----RKRIP   81 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g----~~rr~   81 (493)
                      ++..-+|++.+..|..... .+.....|.|+++.+|.+.++.|++.++-.+...+ +.++|.++||...++    .+||-
T Consensus       255 ~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rki  334 (466)
T KOG2532|consen  255 LTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKI  334 (466)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHH
Confidence            3445556566666666665 36677888999999999999999999887776654 899999999975431    13343


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHH
Q 011112           82 YLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGIC  161 (493)
Q Consensus        82 ~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~l  161 (493)
                      .-.++....+++++.+++.++.. . +..+++..+.....+....-...-..|..    +++.+.++|+.+....+...+
T Consensus       335 fn~i~~~~~ai~l~~l~~~~~~~-~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a----pq~a~~l~g~~~~~~~~~~~~  408 (466)
T KOG2532|consen  335 FNTIAFGGPAVFLLVLAFTSDEH-R-LLAVILLTIAIGLSGFNISGFYKNHQDIA----PQHAGFVMGIINFVGALAGFI  408 (466)
T ss_pred             HHhHHHHHHHHHHHeeeecCCCc-c-hHHHHHHHHHHHHcccchhhhHhhhhhcc----chHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555556555322 2 12223332221111121111111122223    377889999999999999999


Q ss_pred             HHHHHHHhhc---cccHHHHHHHHHHHHHHHHHHh
Q 011112          162 GSLLGGYALT---NIEIDRIFLLFTVLPAIQLLSC  193 (493)
Q Consensus       162 g~~i~g~l~~---~~gw~~~f~~~~~~~~l~~i~~  193 (493)
                      +|.+.|.+..   ...||++|++.+++.++..+..
T Consensus       409 ~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  409 APLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             HHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence            9999999983   3479999999887766655443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.45  E-value=1.5e-06  Score=89.69  Aligned_cols=128  Identities=18%  Similarity=0.129  Sum_probs=94.0

Q ss_pred             eeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeeh
Q 011112          317 YQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYG  396 (493)
Q Consensus       317 ~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~  396 (493)
                      ..++++|.|..+.|++.....++..++++..+++.||+|+|+.+..+.++..++.+.......       .++...++..
T Consensus        28 ~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-------~~~~~~~l~~  100 (410)
T TIGR00885        28 QFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-------IMNYTLFLVG  100 (410)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-------hccHHHHHHH
Confidence            335679999999999999999999999999999999999999999998888776433211110       0112212222


Q ss_pred             hHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHH
Q 011112          397 SALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~  451 (493)
                      .++.....+....+...++.+..|++++++..++.++..++|..+++.+++.+..
T Consensus       101 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~  155 (410)
T TIGR00885       101 LFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLIL  155 (410)
T ss_pred             HHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2223333333444455678888999999999999999999999999999988864

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.40  E-value=1.3e-06  Score=74.59  Aligned_cols=109  Identities=18%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHH
Q 011112          336 GWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILS  415 (493)
Q Consensus       336 ~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  415 (493)
                      ..++.+++.++.+++.||.++|+.+..+..+..+..+.. ...         ++.+.......+.....+........++
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~   76 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMF-ALS---------SNITVLIIARFLQGFGAAFALVAGAALI   76 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHH-HHh---------ccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            456777888999999999999999988877666553221 111         1111111112222333333333446778


Q ss_pred             hhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          416 GQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       416 ~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      .|..|+++|++.+++.++..++|..+++.+++.+.+..|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  115 (141)
T TIGR00880        77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG  115 (141)
T ss_pred             HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc
Confidence            999999999999999999999999999999998886543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.39  E-value=1e-05  Score=85.27  Aligned_cols=159  Identities=13%  Similarity=0.047  Sum_probs=98.6

Q ss_pred             chhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +.+.++.+...+++.... ++.....+.+.+ +..-+....+.+.++..++..+ .|++++++||+     +||+.++.+
T Consensus       229 ~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~-y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-----gkk~~~~~~  302 (473)
T PRK10429        229 KNDQLSCLLGMALAYNIASNIINGFAIYYFT-YVIGDADLFPYYLSYAGAANLVTLILFPRLVKSL-----SRRILWAGA  302 (473)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHhhheeeEEE-EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CcHHHHHHH
Confidence            444444444445544443 333333333433 3333556666655555455554 68999999995     566676666


Q ss_pred             HHHHHHHHHHHhh---cccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh----chhcchhHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGL---NAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSE----RAAFAGDLQSLSWLAMAFGG  159 (493)
Q Consensus        87 ~~l~~~~~~~~~~---~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~----~~~~rg~~~g~~~~~~~~G~  159 (493)
                      ..+.+++.+....   .+.  ...+.+++.-++.+++.+...+...+++.|..+.+    ..++.|...|......-+|.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~  380 (473)
T PRK10429        303 SIFPVLSCGVLLLMGLAAP--HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGS  380 (473)
T ss_pred             HHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHH
Confidence            6665544444332   121  23444555556778888888888899999987531    12334458888888899999


Q ss_pred             HHHHHHHHHhhccccH
Q 011112          160 ICGSLLGGYALTNIEI  175 (493)
Q Consensus       160 ~lg~~i~g~l~~~~gw  175 (493)
                      .+|+.+.|++.+..|+
T Consensus       381 al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        381 AFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999998875554

>TIGR00901 2A0125 AmpG-related permease

Probab=98.39  E-value=6.6e-06  Score=83.00  Aligned_cols=135  Identities=14%  Similarity=0.097  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHh-hHhh-hhhhhhcccccccCCCCchhHHHHHHHH
Q 011112           13 LWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFF-PWSI-KPLYGILSDCIPIKGRKRIPYLVISTVL   89 (493)
Q Consensus        13 ~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l-~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l   89 (493)
                      .+.+....++..+. .......++++++ +|.+.++.+...++... ...+ .+++|+++||+     +||+.++.+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-----g~~~~l~~~~~~  284 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-----NILYALLLFGIV  284 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHH
Confidence            34344444444443 2444556777775 99999999987766553 3444 67899999995     556666666666


Q ss_pred             HHHHHHHHhhcccch-------hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHH
Q 011112           90 SLVPWLILGLNAFFR-------SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMA  156 (493)
Q Consensus        90 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~  156 (493)
                      ..++..+..+.....       .+.+.+..+.++.+++.+...+...+++.|..   |+++||+.+|+.....+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLS---NPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc---CCCccHHHHHHHHHHHh
Confidence            655555443321110       13455666777889999999999999999988   45999999999876654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.39  E-value=0.00044  Score=72.08  Aligned_cols=147  Identities=13%  Similarity=0.140  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCC-----CHhhHHHHHHHHHhhHhh--hhhhhhcccccccCCCCchhH
Q 011112           11 SFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKF-----SPSASQFVSAVAFFPWSI--KPLYGILSDCIPIKGRKRIPY   82 (493)
Q Consensus        11 ~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~-----s~~~~g~~~s~~~l~~~~--~~~~G~lsDr~~~~g~~rr~~   82 (493)
                      +.++.+.+.+|+..+.+ +...     ++|.+++     ..+.+.++.+...+|..+  .|+.+++++|+     +|+++
T Consensus         7 ~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-----~~~~l   76 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-----SKEAL   76 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHh
Confidence            44454556666666664 3322     3777766     336788888888888765  58999999996     45555


Q ss_pred             HHHHHHHHHHHHHHHhhc--ccchh-------------------------hHHHHHHHHHHHHhhhhhHH-HHHHHHHHH
Q 011112           83 LVISTVLSLVPWLILGLN--AFFRS-------------------------STWHLIVLLTAQNLGSAMAD-VVVDAMIAE  134 (493)
Q Consensus        83 ii~~~~l~~~~~~~~~~~--~~~~~-------------------------~~~~l~~~~~l~~~~~~~~~-~~~~ali~~  134 (493)
                      +-.....+....+++++.  |..+.                         ..|...+..+...+-....- ....+.+.|
T Consensus        77 f~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand  156 (472)
T TIGR00769        77 FYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ  156 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555444444444444432  11100                         01122222222333222333 366788889


Q ss_pred             HhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011112          135 AAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL  170 (493)
Q Consensus       135 ~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~  170 (493)
                      +++   .+|..|..+++..+.++|.++|+.+..++.
T Consensus       157 i~t---~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       157 ITT---IDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             cCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            885   488889999999999999999998888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.39  E-value=2.5e-06  Score=85.89  Aligned_cols=136  Identities=19%  Similarity=0.256  Sum_probs=97.9

Q ss_pred             HHHHHHHHhhhCCCHhhHHHHHHHH-HhhHhhhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccc------
Q 011112           31 TAVSYQLKDKLKFSPSASQFVSAVA-FFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFF------  103 (493)
Q Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s~~-~l~~~~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~------  103 (493)
                      ..++||+.+ +|++....+..-.+- ..+..++|+.|..+||-+.|..||||.+..+.....++..++.+..+.      
T Consensus        53 sy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd  131 (498)
T KOG0637|consen   53 SYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD  131 (498)
T ss_pred             ccccHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence            456788775 899887665533222 245667999999999999887799999999998888888877776542      


Q ss_pred             -h------hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011112          104 -R------SSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYA  169 (493)
Q Consensus       104 -~------~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l  169 (493)
                       +      .....+++...+.=++.-....+..++..|+..+++.++|  +++.+.....+|.++|...|++.
T Consensus       132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~--Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR--ANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc--cchhHHHHHHhcceeeeeccccc
Confidence             1      1122233333344455556667788999999875433444  89999999999999999998744

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.33  E-value=2.9e-05  Score=73.88  Aligned_cols=160  Identities=19%  Similarity=0.153  Sum_probs=108.6

Q ss_pred             HHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccc---hhh
Q 011112           30 WTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFF---RSS  106 (493)
Q Consensus        30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~---~~~  106 (493)
                      +..-.+.+|+++|.|.+|.+.+.+.-.++..++++.|.+.|++     +.+..+.+|.+...+++..+...-+.   +.+
T Consensus        21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~-----gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~   95 (250)
T PF06813_consen   21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRF-----GPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP   95 (250)
T ss_pred             hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence            3445677899999999999998888888877899999999985     56777888888888888877665432   135


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Q 011112          107 TWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLP  186 (493)
Q Consensus       107 ~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~  186 (493)
                      +|.+.+..++.+.+.+..++..-....   +.+| ++||.+.|+.-....+++.+-.-+-..+.+...-+..+ +.++.+
T Consensus        96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~---~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll-~la~~~  170 (250)
T PF06813_consen   96 VWLMCLFLFLGGNSSCWFNTASLVTCV---RNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLL-FLAVLP  170 (250)
T ss_pred             hHHHHHHHHHHcccHHHhhhHHHHHHH---HhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHH-HHHHHH
Confidence            666666666666766665543322222   3333 78999999999888888887666666665553334443 344444


Q ss_pred             HHH-HHHhhccccc
Q 011112          187 AIQ-LLSCGLVKEN  199 (493)
Q Consensus       187 ~l~-~i~~~~~~e~  199 (493)
                      .+. ++...++++.
T Consensus       171 ~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  171 AVVCLVAMFFVRPV  184 (250)
T ss_pred             HHHHHHHhhheecc
Confidence            433 3344555543

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.32  E-value=2.3e-05  Score=78.54  Aligned_cols=166  Identities=16%  Similarity=0.058  Sum_probs=109.7

Q ss_pred             HHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhh
Q 011112           21 FTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGL   99 (493)
Q Consensus        21 f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~   99 (493)
                      +.+|.+.+..... .+-++++|++..++..+.-...+.... +.++|.+.||+     +-|+.+..+.++..+.++...+
T Consensus       264 ~~DGv~til~~~~-~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-----g~k~vl~~~lvi~~~~~~~~~~  337 (438)
T COG2270         264 YIDGVNTILAMGG-VFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-----GSKPVLMIGLVILSIAALYLIF  337 (438)
T ss_pred             HHhhHHHHHHHHH-HHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCceeehHHHHHHHHHHHHHHH
Confidence            4477776444432 355778999999988766555555555 67899999996     4456766776665555443333


Q ss_pred             cccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc-HHHH
Q 011112          100 NAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIE-IDRI  178 (493)
Q Consensus       100 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~g-w~~~  178 (493)
                      .. .+..+   .++-.+.|+..+.....+.++..+..   |+++-++.+|++....-.+..+||..-+.+.+..| -|..
T Consensus       338 ~~-~~~~f---~i~gll~g~s~G~~qA~SRSy~~~lv---p~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g  410 (438)
T COG2270         338 LE-GELDF---WILGLLVGTSLGGAQASSRSYLARLV---PKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG  410 (438)
T ss_pred             cc-ccHHH---HHHHHHHHHhcchHHHHHHHHHHHhC---CCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence            32 12222   33334456666666677889988888   45888899999999999999999999998887443 5655


Q ss_pred             HHHHHHHHHHHHHHhhccccc
Q 011112          179 FLLFTVLPAIQLLSCGLVKEN  199 (493)
Q Consensus       179 f~~~~~~~~l~~i~~~~~~e~  199 (493)
                      +....++..+.++..+.+|++
T Consensus       411 ~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         411 VLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHhhHhhEEeecCC
Confidence            554444433334444556655

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.28  E-value=5.4e-06  Score=86.58  Aligned_cols=172  Identities=16%  Similarity=0.119  Sum_probs=107.1

Q ss_pred             eeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHhhhhhhheeccccccC----
Q 011112          315 FYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLK----RLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVG----  386 (493)
Q Consensus       315 ~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~----~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g----  386 (493)
                      ++|. +.+|.+....+++.....+..++..++.|++.|    |+|+||.++.+.....+..+..+..........+    
T Consensus        28 ~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~  106 (477)
T TIGR01301        28 TPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLD  106 (477)
T ss_pred             HHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccccc
Confidence            3443 458999999999988888999999999999999    5999999887644444333332222111000000    


Q ss_pred             ccCc----eEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCch--HHHHHHHHHHHhhhhhhhHhHHHHh--HHhhcCCCC
Q 011112          387 ISDK----TMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIE--GTLFALFMSISNFGSTVGSFFGAGL--ASSLSISSG  458 (493)
Q Consensus       387 ~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--gt~~gl~~~~~~lg~~~~~~i~g~l--~~~~g~~~~  458 (493)
                      ....    +..+....+..+.......|..+++.|.+|+++|  +.+++..+...++|+.+|+.+|+..  .+.++....
T Consensus       107 ~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~  186 (477)
T TIGR01301       107 KKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKT  186 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccc
Confidence            0000    0111111223334445566788899999998865  5789999999999999999999976  333444211


Q ss_pred             Cc-----cchHHHHHHHHhhhhhhhhh-hhcccCC
Q 011112          459 SF-----DNLLLGISIQALCTFIPIAF-LFLIPKG  487 (493)
Q Consensus       459 ~~-----~~~~~~~~~~~~~~~~~~~~-~~~l~~~  487 (493)
                      ..     .++...|.+.+++.++..+. +..+||.
T Consensus       187 ~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       187 EACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            10     14555666666555555444 3566664

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.28  E-value=5.1e-05  Score=74.66  Aligned_cols=173  Identities=17%  Similarity=0.129  Sum_probs=119.5

Q ss_pred             hchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      .+.+.-|.+.+..=+|.+. +.....+|.++.| .|+|.++.|...++..+.-.. +...-.+++|.    ..+|+..+.
T Consensus       205 w~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~----~n~r~~~~~  279 (395)
T COG2807         205 WRSPLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS----KNQRPLVVL  279 (395)
T ss_pred             ccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh----cccchHHHH
Confidence            3444455454444455554 4666788888775 899999999988877654432 44455566663    356667666


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      ....+.++...+.+.|.+..     +...++.|+|.+...+..-.++.+.++  ++++.++..|+.+...++=...||.+
T Consensus       280 ~~~~~l~G~~G~~~~P~~~~-----~lw~~llG~G~G~~F~laL~li~~rs~--~a~~Aa~LSgmaQg~GYllAa~GP~l  352 (395)
T COG2807         280 ALLLMLVGLVGLLLAPGQLP-----ILWALLLGLGQGGAFPLALTLILLRSS--DAAIAAALSGMAQGVGYLLAAFGPWL  352 (395)
T ss_pred             HHHHHHHHHHHHHHhhhhHH-----HHHHHHHhCccchHHHHHHHHHHhhcC--ChHHHHHHHHHhhhhhHHHHhhhhhh
Confidence            66677777777777764321     122367899988888888888888765  46888888888777777777789999


Q ss_pred             HHHhhccc-cHHHHHHHHHHHHHHHHHH
Q 011112          166 GGYALTNI-EIDRIFLLFTVLPAIQLLS  192 (493)
Q Consensus       166 ~g~l~~~~-gw~~~f~~~~~~~~l~~i~  192 (493)
                      .|++-|.. +|+.+.+..+...++..+.
T Consensus       353 ~G~lhDa~gsw~~~~~~l~~~~i~m~i~  380 (395)
T COG2807         353 FGFLHDATGSWSAPLVLLALATLLMLIF  380 (395)
T ss_pred             HhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            99999854 5998887776655555443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.28  E-value=1.8e-05  Score=85.91  Aligned_cols=155  Identities=14%  Similarity=0.155  Sum_probs=114.4

Q ss_pred             HHHHHhhhCCCHhhHHHHHHHH-HhhHhhhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccch----hhHH
Q 011112           34 SYQLKDKLKFSPSASQFVSAVA-FFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFR----SSTW  108 (493)
Q Consensus        34 ~~~l~~~~g~s~~~~g~~~s~~-~l~~~~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~----~~~~  108 (493)
                      ..|+.+.+|.+.++.......+ .+.+....+.|.++|++    .+|++.+.++.++..++..++++.....    ....
T Consensus        11 vlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~----lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~   86 (654)
T TIGR00926        11 VLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGW----LGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDL   86 (654)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHH
Confidence            4456677999988766655544 34555566899999985    6888899999888888887776542110    1122


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhccc-------cHHHHHHH
Q 011112          109 HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNI-------EIDRIFLL  181 (493)
Q Consensus       109 ~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~-------gw~~~f~~  181 (493)
                      ..++...+.+.|.+..-+...+...|..++++.++|-+...+++.+.++|+.+++.+.+++.++.       +|...|.+
T Consensus        87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i  166 (654)
T TIGR00926        87 LDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGV  166 (654)
T ss_pred             HHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Confidence            24456667788888888888899999886544456888999999999999999999999987443       69999998


Q ss_pred             HHHHHHHHHHH
Q 011112          182 FTVLPAIQLLS  192 (493)
Q Consensus       182 ~~~~~~l~~i~  192 (493)
                      .++..++.++.
T Consensus       167 ~~i~m~ia~lv  177 (654)
T TIGR00926       167 PAILMILALIV  177 (654)
T ss_pred             HHHHHHHHHHH
Confidence            88666555543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.21  E-value=6.6e-05  Score=77.99  Aligned_cols=177  Identities=19%  Similarity=0.143  Sum_probs=112.5

Q ss_pred             HHHHHHHHhHHH--hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHH
Q 011112           16 ICLIYFTQGFRS--FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLV   92 (493)
Q Consensus        16 ~~~~~f~~g~~~--~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~   92 (493)
                      .+...+.+-+++  .++..-..++++ -|++..+..+..........+ ..+...+.||.     +||+.++.+...+.+
T Consensus       274 ~~~v~~~qq~sGi~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-----gRRpLll~~~~~~~~  347 (485)
T KOG0569|consen  274 GIVVSFAQQFSGINAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-----GRRPLLLISLSLMAV  347 (485)
T ss_pred             HHHHHHHHHhcCcceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHH
Confidence            445556666653  333333445564 799999887766555444443 67888999995     689999999988888


Q ss_pred             HHHHHhhcccchhhH----H-HHHHHHHHH--HhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           93 PWLILGLNAFFRSST----W-HLIVLLTAQ--NLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        93 ~~~~~~~~~~~~~~~----~-~l~~~~~l~--~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +.+++...-...+..    + ..+++.++.  .++.|.. +...-+.+|++   |++.|..++++.....-+...+-...
T Consensus       348 ~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~g-pi~~fi~aELf---~~~~R~aa~s~~~~~~w~~~fiv~~~  423 (485)
T KOG0569|consen  348 ALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPG-PIPWFIGAELF---PQSARSAAQSVATAVNWLSNFIVGFA  423 (485)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCC-chhHHHHHHhC---CccchHHHHHHHHHHHHHHHHHHHHH
Confidence            877765442211111    1 122333333  3333333 45667889999   45889999998877777776665555


Q ss_pred             HHHhhccccHHHHHHHHHHHHHHHHHH-hhccccccccc
Q 011112          166 GGYALTNIEIDRIFLLFTVLPAIQLLS-CGLVKENRVST  203 (493)
Q Consensus       166 ~g~l~~~~gw~~~f~~~~~~~~l~~i~-~~~~~e~~~~~  203 (493)
                      --.+.+..|- +.|.+..+...+..+. ++.+||+|.+.
T Consensus       424 fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  424 FPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             HHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence            5566666664 6777777666666654 45789998544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.17  E-value=0.0002  Score=73.05  Aligned_cols=185  Identities=15%  Similarity=0.188  Sum_probs=119.3

Q ss_pred             hhhhhchhHHHHHHHHHHH-HhHHHhHHHHHHHHHHhhhCCCH----hhHHHHHHHHHhhHhh-hhhhhhcccccccCCC
Q 011112            4 LKNVFGVSFLWLICLIYFT-QGFRSFVWTAVSYQLKDKLKFSP----SASQFVSAVAFFPWSI-KPLYGILSDCIPIKGR   77 (493)
Q Consensus         4 ~~~~~~~~~~~~~~~~~f~-~g~~~~~~~~~~~~l~~~~g~s~----~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~   77 (493)
                      +.+.++.+..|.+.+...- ...-....+..+.|.++.+. +.    +..|.+.+.....=+. -.+..++.+|+     
T Consensus       213 ~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~-~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-----  286 (412)
T PF01306_consen  213 VLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQ-SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-----  286 (412)
T ss_dssp             HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence            3445677777744333222 22223444445667676443 43    3344444433322222 23456677775     


Q ss_pred             CchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHH-HHHHH
Q 011112           78 KRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLS-WLAMA  156 (493)
Q Consensus        78 ~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~-~~~~~  156 (493)
                      +-|+.++++....++=+..+++++    +.+.+.+...+.++-.+..-+..--++.+..+   ++..+....+. .....
T Consensus       287 g~k~~Lllag~i~~iRi~~~~~~~----~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd---~rlsAt~y~v~~~~~~~  359 (412)
T PF01306_consen  287 GAKNLLLLAGVIMAIRIIGSGFAT----NPWVISLIKLLHALEFPLLLVAAFKYITAHFD---KRLSATLYLVGFQFAKQ  359 (412)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHT------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----GGGHHHHHHHHHTTTHH
T ss_pred             ChHhHHHHHHHHHHHHHHHHhhhc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHH
Confidence            567777788778888888888876    45677889999999888888888888887774   46666677764 57778


Q ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh-hccccccc
Q 011112          157 FGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSC-GLVKENRV  201 (493)
Q Consensus       157 ~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~  201 (493)
                      +|..+.+.++|.++|+.|.+.+|++++.+.+...+.. +.++++++
T Consensus       360 ~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  360 IGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            9999999999999999999999999887766655544 44554443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.16  E-value=0.00024  Score=68.32  Aligned_cols=157  Identities=27%  Similarity=0.252  Sum_probs=107.9

Q ss_pred             HHHHhHHH-hHHHHHHHHHHhhhCCCH--hhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHH
Q 011112           20 YFTQGFRS-FVWTAVSYQLKDKLKFSP--SASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWL   95 (493)
Q Consensus        20 ~f~~g~~~-~~~~~~~~~l~~~~g~s~--~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~   95 (493)
                      .+...+.. ......+ .+.++++.+.  .+.++..+.+.+...+ .+++|.++||+     +||+.++.+......+.+
T Consensus        11 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~~~~~~~~~~~~~   84 (338)
T COG0477          11 ALLLGLDLGLLSPALP-LLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-----GRRKVLIIGLLLFLLGTL   84 (338)
T ss_pred             HHHHHHhcchHHHHHH-HHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-----cchHHHHHHHHHHHHHHH
Confidence            34444443 3333333 3344566565  4778888888887776 58999999985     455666666654444445


Q ss_pred             HHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHH-HHHHHHHHHHHHHHHhhcc--
Q 011112           96 ILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWL-AMAFGGICGSLLGGYALTN--  172 (493)
Q Consensus        96 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~-~~~~G~~lg~~i~g~l~~~--  172 (493)
                      .+.+.++  ...+.+.+.|+.++++.+...+...+++.|..++ . ++|+...+.... ...+|..+++.+++.+...  
T Consensus        85 ~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
T COG0477          85 LLALAPN--VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A-TERGLAVGLVTLGAGALGLALGPLLAGLLLGALL  160 (338)
T ss_pred             HHHhCcc--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555542  2466788889889999988888999999998742 1 578888888888 5888889998888877654  


Q ss_pred             ccHHHHHHHHHHHH
Q 011112          173 IEIDRIFLLFTVLP  186 (493)
Q Consensus       173 ~gw~~~f~~~~~~~  186 (493)
                      .+||+.|.......
T Consensus       161 ~~~~~~~~~~~~~~  174 (338)
T COG0477         161 WGWRAAFLLAALLG  174 (338)
T ss_pred             cchHHHHHHHHHHH
Confidence            67998766655443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.15  E-value=4.4e-06  Score=82.28  Aligned_cols=114  Identities=12%  Similarity=0.108  Sum_probs=84.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHH
Q 011112          324 LEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAV  403 (493)
Q Consensus       324 ~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~  403 (493)
                      -+....|.+....++.-.+.++++|.+.||+|||.++.++.+..+++.+++.  .         +....++   .+.-++
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~--~---------S~~F~af---v~aR~l  130 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWA--L---------SRNFAAF---VLARFL  130 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH--H---------HHHHHHH---HHHHHh
Confidence            3444567777777888889999999999999999999999887777543321  1         1111010   111122


Q ss_pred             HH---hhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHH
Q 011112          404 NQ---FKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       404 ~~---~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~  451 (493)
                      ++   ....+..++++|+.++++|+.++++++...++|-.+||++||++.+
T Consensus       131 ~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  131 GGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             hhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            22   2344567899999999999999999999999999999999999998

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=9.9e-06  Score=80.32  Aligned_cols=141  Identities=15%  Similarity=0.167  Sum_probs=102.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHH
Q 011112          322 LNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVD  401 (493)
Q Consensus       322 ~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~  401 (493)
                      .+-+..+.|++...-++..++.+++.|.+.||+|+|..++++.+++..+..+..+ .         ....+.+..=.++.
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf-g---------~sy~~l~vAR~LQg  170 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF-G---------NSYPMLFVARSLQG  170 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH-c---------chhHHHHHHHHHhh
Confidence            4445668899998899999999999999999999999999999999887643221 1         11121111112222


Q ss_pred             HHHHhhHhHHHHHHhhcCCCCc-hHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhh
Q 011112          402 AVNQFKFMPFLILSGQLCPPGI-EGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAF  480 (493)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~p~~~-~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (493)
                      ....+....-++++++.+|++. |++++|..-.+..+|..+||.+||.++|..|...+        |+++++..++-.++
T Consensus       171 vgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP--------FlVL~~v~Lld~~L  242 (464)
T KOG3764|consen  171 VGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP--------FLVLAIVLLLDGAL  242 (464)
T ss_pred             hhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCc--------HHHHHHHHHHHHHH
Confidence            3333445555778889998766 59999999999999999999999999999887643        34555555555444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.10  E-value=3.4e-06  Score=91.79  Aligned_cols=165  Identities=13%  Similarity=0.092  Sum_probs=107.1

Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccc-c-ccC----------
Q 011112          319 TEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMN-L-TVG----------  386 (493)
Q Consensus       319 ~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~-~-~~g----------  386 (493)
                      .+.++++..+.|++.....++..++.++.+++.||.++++.+.++.+++.++.++.. +.+... . ..+          
T Consensus        60 ek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a-lphf~~~~y~~~~~~~~~~~~~  138 (633)
T TIGR00805        60 ERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS-LPHFLSGRYSYSTTVSSTGNLS  138 (633)
T ss_pred             hhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh-ChHHhcCCcccccccccccccc
Confidence            455899999999998888889999999999999999999999999888888765432 111000 0 000          


Q ss_pred             ---------------------------cc-CceEeeehhHHHHHHHHhh----HhHHHHHHhhcCCCCchHHHHHHHHHH
Q 011112          387 ---------------------------IS-DKTMVLYGSALVDAVNQFK----FMPFLILSGQLCPPGIEGTLFALFMSI  434 (493)
Q Consensus       387 ---------------------------~~-~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~gt~~gl~~~~  434 (493)
                                                 .. ...+.  ...+..+..++.    +....+++.|..|++.++.+.++++..
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~  216 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWL--LFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESI  216 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceeh--hhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHH
Confidence                                       00 00111  111223333222    222357899999999999999999999


Q ss_pred             HhhhhhhhHhHHHHhHHhhc-C----------CC--CCccc-hHHHHHHHHhhhhhhhhhhhcccC
Q 011112          435 SNFGSTVGSFFGAGLASSLS-I----------SS--GSFDN-LLLGISIQALCTFIPIAFLFLIPK  486 (493)
Q Consensus       435 ~~lg~~~~~~i~g~l~~~~g-~----------~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~  486 (493)
                      ..+|..+|+.+++.+.+.+. +          ..  +.+-+ ++..+.+.+++.++..+.+..+||
T Consensus       217 ~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       217 AVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             HHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            99999999999999987542 1          11  11212 455566666555554443444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.00  E-value=2.1e-05  Score=82.71  Aligned_cols=129  Identities=12%  Similarity=0.013  Sum_probs=94.1

Q ss_pred             HhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccch------hhHHHH
Q 011112           38 KDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFR------SSTWHL  110 (493)
Q Consensus        38 ~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~------~~~~~l  110 (493)
                      .+++|.+++++|...+...+...+ ..+.+.+.+|+     +.|+.+.++.++.+++.+......+..      .+.+..
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-----~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-----PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            356999999999887776665555 56677777764     567777777777766654432111000      112233


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 011112          111 IVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTNIE  174 (493)
Q Consensus       111 ~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~g  174 (493)
                      ...-.+.+++.+....+...++.+..+   ++++|..+++.....++|..+++.++|.+.++.|
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p---~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCP---SGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCC---CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            444567788888888888999999884   5899999999999999999999999999998777

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=98.00  E-value=0.00062  Score=71.49  Aligned_cols=161  Identities=12%  Similarity=0.068  Sum_probs=86.5

Q ss_pred             hhchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHH
Q 011112            7 VFGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLV   84 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii   84 (493)
                      ..+.+.+..+...+++..+.. ........+.+..+| ++...+.+.+.+.++..+ .+++++++||+     +||+.+.
T Consensus       224 ~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g-~~~~~~~~l~~~~i~~iig~~l~~~l~~r~-----gkk~~~~  297 (460)
T PRK11462        224 IWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILG-TPEVFVAFLTTYCVGNLIGSALAKPLTDWK-----CKVTIFW  297 (460)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ChHHHHH
Confidence            345555554544555554443 333333444444444 444445455555555554 57899999995     3444444


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh----chhcchhHHHHHHHHHHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSE----RAAFAGDLQSLSWLAMAFGGI  160 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~----~~~~rg~~~g~~~~~~~~G~~  160 (493)
                      .+.....+...+..+.+..  +...+++..++.+++.+...+...+++.|..+.+    ..++-|...+......-+|..
T Consensus       298 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~a  375 (460)
T PRK11462        298 WTNALLAVISLAMFFVPMQ--ASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLA  375 (460)
T ss_pred             HHHHHHHHHHHHHHHhchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            3333222222223333321  2222333444556666666666788888877531    122223335666677888999


Q ss_pred             HHHHHHHHhhccccH
Q 011112          161 CGSLLGGYALTNIEI  175 (493)
Q Consensus       161 lg~~i~g~l~~~~gw  175 (493)
                      +|+.++|.+.+..|+
T Consensus       376 lg~~i~g~iL~~~Gy  390 (460)
T PRK11462        376 FGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999988888764443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.82  E-value=0.00039  Score=71.71  Aligned_cols=159  Identities=17%  Similarity=0.120  Sum_probs=106.9

Q ss_pred             chhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112            9 GVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      +.+-+..+++.+++.... .+.......|.+..+|-++.+..........+... .+++-.+++|+     +||+...++
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-----gkk~~~~~~  308 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-----GKKKLFLIG  308 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----chHHHHHHH
Confidence            444444344445444333 35555555565555665555555544444444445 57899999985     678888899


Q ss_pred             HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh----chhcchhHHHHHHHHHHHHHHHH
Q 011112           87 TVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSE----RAAFAGDLQSLSWLAMAFGGICG  162 (493)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~----~~~~rg~~~g~~~~~~~~G~~lg  162 (493)
                      .++.+++.+.+.+.+  +++....++..++.++|.+...+...++++|..+-+    ..++-|-..|......=+|..++
T Consensus       309 ~~~~~i~~~~~~f~~--~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala  386 (467)
T COG2211         309 LLLLAVGYLLLYFTP--AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALA  386 (467)
T ss_pred             HHHHHHHHHHHHhhc--CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence            999999988888876  245667778888999999999999999999887532    22334455566666666888888


Q ss_pred             HHHHHHhhcccc
Q 011112          163 SLLGGYALTNIE  174 (493)
Q Consensus       163 ~~i~g~l~~~~g  174 (493)
                      ..+.|++.+..|
T Consensus       387 ~~~~g~~L~~~G  398 (467)
T COG2211         387 GFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHcC
Confidence            888787776443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.78  E-value=0.0002  Score=73.84  Aligned_cols=164  Identities=16%  Similarity=0.187  Sum_probs=122.5

Q ss_pred             HHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHH
Q 011112           16 ICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVP   93 (493)
Q Consensus        16 ~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~   93 (493)
                      +++..++.|+. +++..++-.+++ |.|-.+..-|........+=+. =++.+++..++     ++.+.+.+++....+=
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-----GHv~v~~lgLa~~~~R  449 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-----GHVNVMYLGLACNVGR  449 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-----cccceeeehhhHHHHH
Confidence            44555666764 588888877766 4776666667433333333333 35667888874     6777887887777776


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHH-HHHHHHHHHHHHHhhcc
Q 011112           94 WLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAM-AFGGICGSLLGGYALTN  172 (493)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~-~~G~~lg~~i~g~l~~~  172 (493)
                      ++.++...    +.|..+-.-+++++..+..+...-+++++..   ||+.|..++++..... .+|--+|.+|||.+.++
T Consensus       450 f~~~S~L~----n~W~vLPieilqgit~aliWaa~~sY~s~va---Pp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~  522 (618)
T KOG3762|consen  450 FLYYSYLQ----NPWMVLPIEILQGITHALIWAAIISYASHVA---PPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER  522 (618)
T ss_pred             HHHHHHhc----CchheeeHHHHHHHHHHHHHHHHHHHHHhhC---CCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence            76666664    4667777889999999999999999999988   5688999999887655 47778999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHH
Q 011112          173 IEIDRIFLLFTVLPAIQLLS  192 (493)
Q Consensus       173 ~gw~~~f~~~~~~~~l~~i~  192 (493)
                      ++-|..|.+.++.+++.++.
T Consensus       523 fg~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  523 FGARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             ehhHHHHHHHHHHHHHHHHH
Confidence            99999999988777666653

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.00024  Score=70.95  Aligned_cols=140  Identities=13%  Similarity=0.092  Sum_probs=97.8

Q ss_pred             HhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheecccc
Q 011112          304 HVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNL  383 (493)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~  383 (493)
                      +......+..+.+.+++.++.+..+.+++......+-.+.++..+++.+|+|+|+.++.+..++++...+......    
T Consensus        25 ~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~----  100 (422)
T COG0738          25 WGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS----  100 (422)
T ss_pred             HHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh----
Confidence            3444455566655566779999999999988888888899999999999999999999999988886543211111    


Q ss_pred             ccCccCceEeeehhH-HHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHH
Q 011112          384 TVGISDKTMVLYGSA-LVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       384 ~~g~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~  451 (493)
                         ..+..+.++..+ +.... ++.=.....++..+-+++..+.-..+...++.+|..++|.+++.+..
T Consensus       101 ---~~~y~~FL~~lFila~Gi-~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         101 ---SKSYGFFLVALFILASGI-GLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             ---hhhHHHHHHHHHHHHhhh-HHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence               011111111111 11111 11112234567788888888889999999999999999999999887

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.73  E-value=0.00021  Score=76.22  Aligned_cols=148  Identities=14%  Similarity=0.154  Sum_probs=98.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHH
Q 011112          320 EILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSAL  399 (493)
Q Consensus       320 ~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~  399 (493)
                      +..+.+.....+...+..+|.++|++++|.+.||+|||+++..+.++..+..+... +.         ++....+..=++
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a-~a---------~~~~~~~~~Rfl  180 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTA-FA---------PNYWMFLIFRFL  180 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHH-Hh---------CcHHHHHHHHHH
Confidence            33556666777778889999999999999999999999999999998887653321 11         222222222223


Q ss_pred             HHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhh
Q 011112          400 VDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIA  479 (493)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  479 (493)
                      .++.....+.....+.+|..+++.|+.+..+ ......++.+++..++++...          +.+...+.++.+++.++
T Consensus       181 ~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~----------Wr~~~~~~~~~~~~~~~  249 (521)
T KOG0255|consen  181 SGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRD----------WRWLFWIISIPSGLFLL  249 (521)
T ss_pred             HHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHHH
Confidence            3333333333446788999999999999999 777777888888888877762          23344444444444444


Q ss_pred             hhhcccCCC
Q 011112          480 FLFLIPKGA  488 (493)
Q Consensus       480 ~~~~l~~~~  488 (493)
                      +..+.||..
T Consensus       250 ~~~l~~Es~  258 (521)
T KOG0255|consen  250 LWFLPPESP  258 (521)
T ss_pred             HHHccCcCh
Confidence            333444554

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.0097  Score=61.55  Aligned_cols=105  Identities=10%  Similarity=0.006  Sum_probs=74.2

Q ss_pred             HHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 011112           54 VAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMI  132 (493)
Q Consensus        54 ~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali  132 (493)
                      +....+.+ +.+.+.+.|++     +-|+.++++........+.....+     -+.+++.-.+.|+|.+....---.+.
T Consensus        58 iiY~~ftv~~l~~psiv~~i-----~~K~~lv~ga~~y~~f~~gfl~~N-----~y~~yfssallG~Gaallw~GqG~yl  127 (461)
T KOG3098|consen   58 IIYAFFTVSCLFAPSIVNFL-----GPKWALVIGATCYAAFPLGFLFPN-----SYYLYFSSALLGFGAALLWTGQGGYL  127 (461)
T ss_pred             HHHHHHHHHHHhhHHHHHHh-----hHHHHHHHHhHHHHHHHHHHHhcc-----hHHHHHHHHHhhhhHHheecccceeh
Confidence            33444444 67889999985     578888888888777666555543     33456777788999887665545555


Q ss_pred             HHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011112          133 AEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT  171 (493)
Q Consensus       133 ~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~  171 (493)
                      .+..+   ++++.+..++.|.....+.++|.++...+..
T Consensus       128 t~~st---~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~  163 (461)
T KOG3098|consen  128 TSNST---RETIERNISIFWAIGQSSLIIGGIILFIYFQ  163 (461)
T ss_pred             hhcCC---hhhHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence            55554   4778888999999999988888777655543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.67  E-value=0.0032  Score=63.48  Aligned_cols=152  Identities=16%  Similarity=0.092  Sum_probs=115.7

Q ss_pred             HHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhhh-hhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHH
Q 011112           30 WTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIKP-LYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTW  108 (493)
Q Consensus        30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~~-~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~  108 (493)
                      ..-+.||=-+.||+|..|...+.+.+..+..++. +.|.+..|    +.++++...+++..++++..+...+... .+.+
T Consensus       228 D~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~----~~~~~~~a~~G~~~~~~~f~lii~a~~~-~~~~  302 (403)
T PF03209_consen  228 DVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR----RLGKKRTAALGCLLGALAFALIILAGPL-GSPW  302 (403)
T ss_pred             HHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHHHHHHHHHHhc-ccch
Confidence            4445677788999999999988888887766653 56777664    3566777778888877776665544221 2456


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc----------cccHHHH
Q 011112          109 HLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT----------NIEIDRI  178 (493)
Q Consensus       109 ~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~----------~~gw~~~  178 (493)
                      .+-...++.|++.+...+..-+.+.|++.   +++.|..+|.+...+.++.-+|..+||.+.|          ..+|..+
T Consensus       303 ~~~~~~~l~G~g~G~f~vgals~mM~lt~---~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~V  379 (403)
T PF03209_consen  303 LFRPGVFLLGLGNGLFTVGALSLMMDLTS---AGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVV  379 (403)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhCCC---CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHH
Confidence            67778888999999999999999999985   4788999999999999999999999997765          2357888


Q ss_pred             HHHHHHHHHHH
Q 011112          179 FLLFTVLPAIQ  189 (493)
Q Consensus       179 f~~~~~~~~l~  189 (493)
                      |.+.++..++.
T Consensus       380 F~lEa~ll~~a  390 (403)
T PF03209_consen  380 FALEAVLLLAA  390 (403)
T ss_pred             HHHHHHHHHHH
Confidence            88877554433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.62  E-value=6.4e-06  Score=83.22  Aligned_cols=123  Identities=17%  Similarity=0.185  Sum_probs=92.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeeh-hH
Q 011112          320 EILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYG-SA  398 (493)
Q Consensus       320 ~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~-~~  398 (493)
                      +.+|.++...|++..+-.+..++++++.|++.||+.|++++.++..+-.++.+..- +          .. .+|... +=
T Consensus        61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~-f----------s~-~Fwq~~l~R  128 (493)
T KOG1330|consen   61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG-F----------SN-HFWQVLLCR  128 (493)
T ss_pred             HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH-H----------HH-HHHHHHHHH
Confidence            34888999999999999999999999999999999999999999888776532211 1          11 112111 00


Q ss_pred             HHHHHHHhhHhHH-HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          399 LVDAVNQFKFMPF-LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       399 ~~~~~~~~~~~~~-~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ..-.+++..+.|. ..++++..|.++|++.+++++.....|..+|-.+|+.+.+..+
T Consensus       129 ~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  129 GFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            1112234455565 6789999999999999999999999999999888888887654

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.57  E-value=0.0027  Score=67.92  Aligned_cols=184  Identities=14%  Similarity=0.058  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHh---hHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112           11 SFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPS---ASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus        11 ~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~---~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      +.+...++..|+.|+.. -....-|......++-+..   ..++......++-.. +.+.|.+.-++    +|-|+.++.
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i----r~~Kw~li~  385 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI----RHIKWQLIF  385 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc----cchhHHHHH
Confidence            34444455666766543 1112223333444555442   455544444444333 45677777654    245556667


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +..+..+++.+++.....  +....+..-++.+++.+....+....+.-..   |+++.|.+.|+......+|+.+|..+
T Consensus       386 ~~~~~ta~~Gama~~~~~--n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~---p~~~ig~a~gL~~s~R~~GGsIg~aI  460 (599)
T PF06609_consen  386 GSVLMTAFCGAMAAVRPD--NKNAAIAFLVLAGFGIGGILVPAIVIAQLIV---PDEDIGTATGLTGSIRSIGGSIGYAI  460 (599)
T ss_pred             HHHHHHHHHHHHHHccCC--CcchHHHHHHHHHHhHHHHHHHHHHeeEeee---CchHHHHHHHHHHHHHHHhhHHHHHH
Confidence            766666655555544321  2223345666778888777666544433233   45889999999999999999988887


Q ss_pred             HHHhhcc--------------------------------------------------------------ccHHHHHHHHH
Q 011112          166 GGYALTN--------------------------------------------------------------IEIDRIFLLFT  183 (493)
Q Consensus       166 ~g~l~~~--------------------------------------------------------------~gw~~~f~~~~  183 (493)
                      -..+..+                                                              .++|++++...
T Consensus       461 y~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~si  540 (599)
T PF06609_consen  461 YNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSI  540 (599)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6544421                                                              15789999888


Q ss_pred             HHHHHHHHHhhccccccccc
Q 011112          184 VLPAIQLLSCGLVKENRVST  203 (493)
Q Consensus       184 ~~~~l~~i~~~~~~e~~~~~  203 (493)
                      ..+++..+.++++++.++..
T Consensus       541 aFG~vaiiaa~fl~d~~~~m  560 (599)
T PF06609_consen  541 AFGVVAIIAALFLGDIDKYM  560 (599)
T ss_pred             HHHHHHHHHHHHcCChHHhh
Confidence            77777777888888765443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.57  E-value=0.00047  Score=72.37  Aligned_cols=160  Identities=17%  Similarity=0.263  Sum_probs=109.1

Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhH
Q 011112          319 TEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSA  398 (493)
Q Consensus       319 ~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~  398 (493)
                      +++.++...+++.+..+..++-+++.+..+.+.||.+.++.+....++..+..++... ++         +....++.=+
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~-~~---------s~~~~ialr~  142 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA-VH---------SFPGLIALRF  142 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-Hh---------hhHHHHHHHH
Confidence            4567888889999988899999999999999999999888887777766554322221 11         1111112223


Q ss_pred             HHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhh-
Q 011112          399 LVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIP-  477 (493)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-  477 (493)
                      +.+.+.+..+.+...++.+.+.++++|+-+|++++..++|+.+|+.+...+.+.-|.  ....++.+.+++..+++++- 
T Consensus       143 llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~--~~~~gW~~~FiI~G~i~~~~g  220 (495)
T KOG2533|consen  143 LLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS--GGLAGWRWLFIIEGVITLVLG  220 (495)
T ss_pred             HHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC--CCcCCceeehhHHHHHHHHHH
Confidence            334444445555667899999999999999999999999999999888776653222  12234556677755555444 


Q ss_pred             hhhhhcccCCCCC
Q 011112          478 IAFLFLIPKGATG  490 (493)
Q Consensus       478 ~~~~~~l~~~~~~  490 (493)
                      ++..+++|+..++
T Consensus       221 i~~f~~lp~~P~~  233 (495)
T KOG2533|consen  221 IVVFFFLPDNPSK  233 (495)
T ss_pred             heEEEEecCChhh
Confidence            4444677766553

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.49  E-value=0.00065  Score=72.39  Aligned_cols=144  Identities=15%  Similarity=0.169  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhh
Q 011112          328 FLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFK  407 (493)
Q Consensus       328 ~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~  407 (493)
                      +.+++.....++..+++++.+++.|++|||+.+.++.+...++.++....          ++....+.+-.+.++..+..
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a----------~~~~~l~~GR~l~G~g~G~~  159 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA----------PSWYQLIVGRILTGLGVGGA  159 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhccchhhh
Confidence            45788888889999999999999999999999999999888876543221          11111222223333333334


Q ss_pred             HhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhcccCC
Q 011112          408 FMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIPKG  487 (493)
Q Consensus       408 ~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  487 (493)
                      ......+++|.+|++.||...+..+....+|..++ .+.+...+...      .+++..+.+..+.+++-.+...++||+
T Consensus       160 ~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~------~~Wr~~~~~~~i~~~~~~~~~~~~pes  232 (513)
T KOG0254|consen  160 SVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVY------AGWRIPLGLALIPAVILALGMLFLPES  232 (513)
T ss_pred             hhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCC------ccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            44455689999999999999888887777666666 23332222110      123344444444444444445677765


Q ss_pred             C
Q 011112          488 A  488 (493)
Q Consensus       488 ~  488 (493)
                      -
T Consensus       233 p  233 (513)
T KOG0254|consen  233 P  233 (513)
T ss_pred             h
Confidence            3

>PTZ00207 hypothetical protein; Provisional

Probab=97.46  E-value=0.00098  Score=71.45  Aligned_cols=127  Identities=17%  Similarity=0.120  Sum_probs=77.8

Q ss_pred             eeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehh
Q 011112          318 QTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGS  397 (493)
Q Consensus       318 ~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~  397 (493)
                      +.+++|+|..+.+.+..++.... ...++.|++.||+|+|+++.++.++..++.+........   .. .++.+......
T Consensus        53 L~~~lgls~~~l~~i~svg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~---~i-~~s~~~l~l~r  127 (591)
T PTZ00207         53 MQARYNLTQRDLSTITTVGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE---VI-EGSVVRLSVYN  127 (591)
T ss_pred             HHHHhCcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc---cc-cCcHHHHHHHH
Confidence            45669999999888755544333 345568999999999999999999888875432211110   00 01111111111


Q ss_pred             HHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhh-hHhHHHHhH
Q 011112          398 ALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTV-GSFFGAGLA  450 (493)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~-~~~i~g~l~  450 (493)
                      .+.....++...+....+.+..| ++||++.|+..+...+|..+ ++...+.+.
T Consensus       128 ~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        128 GLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12222222333344556777776 68899999999999999875 455555443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.44  E-value=0.00081  Score=68.49  Aligned_cols=110  Identities=11%  Similarity=0.097  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHhhc--ccc---hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHH
Q 011112           82 YLVISTVLSLVPWLILGLN--AFF---RSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMA  156 (493)
Q Consensus        82 ~ii~~~~l~~~~~~~~~~~--~~~---~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~  156 (493)
                      .++++.++.+++.+++.++  +..   ......+.+...+.++|.|..-+....+..|..++++.++|.+...+++.+.+
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in   82 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN   82 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence            4667778888887774332  211   11234567777888999999999999999999987546888899999999999


Q ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Q 011112          157 FGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLL  191 (493)
Q Consensus       157 ~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i  191 (493)
                      +|..++..+.+++.++.||.+.|.+.++..++..+
T Consensus        83 ~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~  117 (372)
T PF00854_consen   83 IGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALI  117 (372)
T ss_dssp             HHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhcccchhhccccchhhhhhHHHHHHHHHHH
Confidence            99999999999999999999999988765444443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.29  E-value=0.00048  Score=70.78  Aligned_cols=149  Identities=17%  Similarity=0.175  Sum_probs=91.2

Q ss_pred             CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHH
Q 011112          322 LNLEASFLGTA-RVVGWVGLMLGTYTYNGYLKRL-KLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSAL  399 (493)
Q Consensus       322 ~g~s~~~~gl~-~~~~~~~~~l~~~~~~~~~~~~-~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~  399 (493)
                      +|+|++++.-+ ....+..- +...++|++.||. |+|+.+..+.+++.++-++. ....    ..  ....++++...+
T Consensus        56 Lg~~~~~A~~l~~~y~slVY-~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L-~~~~----~~--~~~gl~i~L~~I  127 (498)
T COG3104          56 LGFDETHATGLFSAYGSLVY-LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVL-AISS----VS--GPGGLYIGLALI  127 (498)
T ss_pred             CCcChHhhHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-hccc----cc--cccHHHHHHHHH
Confidence            55888765443 33333333 3456778888885 99999999999998875332 1110    00  011122222222


Q ss_pred             HHHHH-HhhHhHHHHHHhhcCCCC--chHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhh
Q 011112          400 VDAVN-QFKFMPFLILSGQLCPPG--IEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFI  476 (493)
Q Consensus       400 ~~~~~-~~~~~~~~~~~~~~~p~~--~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  476 (493)
                        .++ +..=.....+..+++|++  .|-.+++++....|+|+.++|.+.+++.+.+|+        ...+.+++.-..+
T Consensus       128 --~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~--------~~gF~~aavGm~~  197 (498)
T COG3104         128 --IVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGW--------HVGFGLAAVGMII  197 (498)
T ss_pred             --HhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCH--------HHHHHHHHHHHHH
Confidence              232 211112245677777643  255678888888999999999999999998763        4567777777777


Q ss_pred             hhhhhhcccCCC
Q 011112          477 PIAFLFLIPKGA  488 (493)
Q Consensus       477 ~~~~~~~l~~~~  488 (493)
                      +++..++.||+-
T Consensus       198 gl~~f~~~~r~~  209 (498)
T COG3104         198 GLVIFLLGRRHV  209 (498)
T ss_pred             HHHHHHHccchh
Confidence            777666666543

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.29  E-value=0.0012  Score=50.85  Aligned_cols=65  Identities=29%  Similarity=0.359  Sum_probs=43.8

Q ss_pred             HHHHHH-HhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHH
Q 011112           17 CLIYFT-QGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIS   86 (493)
Q Consensus        17 ~~~~f~-~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~   86 (493)
                      -..||+ .+..+.....++.+++ +.|.|..|+|.+.++..+.-.+ .|+||.++||+    .++|..+..+
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~----~~~~~~l~~~   72 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF----GKRKVILLGS   72 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CccHHHHHHH
Confidence            344544 2333334455566766 4999999999998887776666 78999999996    3445444443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.27  E-value=0.0022  Score=65.02  Aligned_cols=164  Identities=13%  Similarity=0.052  Sum_probs=97.9

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHH
Q 011112          321 ILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALV  400 (493)
Q Consensus       321 ~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~  400 (493)
                      .+| +.+..-+...+..+..+..++.+-|+.||.|.|.....+.....++..+-+...  ++.   ++ ..++-......
T Consensus        74 ~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss--~p~---v~-~~f~~~l~~~G  146 (480)
T KOG2563|consen   74 FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISS--LPF---VP-PLFRRPLTHTG  146 (480)
T ss_pred             Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc--Ccc---cc-ccchhhhhHHh
Confidence            356 544555667777777778788889999999999999999999988765543322  111   11 12221122222


Q ss_pred             HHHHHhhHhHHH----HHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccc-hHHHHHHHHhhhh
Q 011112          401 DAVNQFKFMPFL----ILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDN-LLLGISIQALCTF  475 (493)
Q Consensus       401 ~~~~~~~~~~~~----~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~-~~~~~~~~~~~~~  475 (493)
                      +.+...+.+-.+    -...-..|+++|+++..+-...+.+|.+++-.+...+..+-.-. .+... ...++.......+
T Consensus       147 q~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~-~~~~~~~~~~f~~~~~l~~  225 (480)
T KOG2563|consen  147 QSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDS-EDNSWLFFTLFLGVECLAA  225 (480)
T ss_pred             HHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCc-chhHHHHHHHHHHHHHHHH
Confidence            322222111111    12445689999999999988888899888888888777643111 11111 1123444555555


Q ss_pred             hhhhhhhcccCCCCCCC
Q 011112          476 IPIAFLFLIPKGATGVP  492 (493)
Q Consensus       476 ~~~~~~~~l~~~~~~~~  492 (493)
                      +++++.....+++.+.|
T Consensus       226 l~l~l~~~~~~~~P~tP  242 (480)
T KOG2563|consen  226 LLLALVLFVFTKKPPTP  242 (480)
T ss_pred             HHHHHHHHhcCCCCCCC
Confidence            55555556666666666

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.23  E-value=0.0019  Score=50.28  Aligned_cols=73  Identities=14%  Similarity=0.216  Sum_probs=60.9

Q ss_pred             hHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhh-hhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcc
Q 011112           24 GFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSIK-PLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNA  101 (493)
Q Consensus        24 g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~-~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~  101 (493)
                      |+..+.++++.|.+.+|.++|.++.|++.+...++|.++ .....+.++     .++++.+..+.+...++.+.+++.+
T Consensus         5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-----SRPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445577888999999999999999999999999999984 566777765     3567788899999999998888875

Note that many members are hypothetical proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.17  E-value=1.4e-05  Score=83.43  Aligned_cols=151  Identities=16%  Similarity=0.192  Sum_probs=90.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHH
Q 011112          325 EASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVN  404 (493)
Q Consensus       325 s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~  404 (493)
                      +....++......++.++|+++.+++.||+|||+.+.++.++..++.++... .. .     ..+.......-.+.++..
T Consensus        44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~-~~-~-----~~~~~~~~~~R~~~G~~~  116 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAF-AP-S-----YNNFWMLLIGRFLIGFGI  116 (451)
T ss_pred             hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccc-cc-c-----cccccccccccccccccc
Confidence            3445677778888999999999999999999999999998887776543211 10 0     002222221212222222


Q ss_pred             HhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhhhcc
Q 011112          405 QFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLI  484 (493)
Q Consensus       405 ~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  484 (493)
                      +........++.|.+|++.|+...++.+....+|..++..++-.+.+..+     ...+...+.+..+.+++.++...++
T Consensus       117 g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~~Wr~~~~~~~~~~l~~~~~~~~~  191 (451)
T PF00083_consen  117 GGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD-----NWGWRILLIFGAIPSLLVLLLRFFL  191 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccc
Confidence            33334445689999999999998888777776666666555433322111     1123333444455554444445677


Q ss_pred             cCC
Q 011112          485 PKG  487 (493)
Q Consensus       485 ~~~  487 (493)
                      ||.
T Consensus       192 pES  194 (451)
T PF00083_consen  192 PES  194 (451)
T ss_pred             ccc
Confidence            765

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.11  E-value=0.014  Score=55.38  Aligned_cols=149  Identities=13%  Similarity=0.082  Sum_probs=78.6

Q ss_pred             HHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHh-hHhhhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHH
Q 011112           19 IYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFF-PWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLIL   97 (493)
Q Consensus        19 ~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l-~~~~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~   97 (493)
                      .|++.-.......+-..++-+.+|.-..++|.+.-.-+- .+.++.+.|.++|+.     +||+--+.-++.+++++   
T Consensus        45 VyslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-----GRKracvtycitYiLsC---  116 (454)
T KOG4332|consen   45 VYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-----GRKRACVTYCITYILSC---  116 (454)
T ss_pred             HHHHHHhhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-----ccccceeeehHHHHHHH---
Confidence            344332233445555556666788888888874322211 223477899999984     45544333333333332   


Q ss_pred             hhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHH----HHHH----HHHHHHHHHHh
Q 011112           98 GLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLA----MAFG----GICGSLLGGYA  169 (493)
Q Consensus        98 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~----~~~G----~~lg~~i~g~l  169 (493)
                       .+ .++..+-.+.+.|.+.|+..+.....-.+.   +..+ ..++|+.-.-+....    ..+|    .++..+.|-.+
T Consensus       117 -iT-KhSpqYkVLmVGR~LGGiaTsLLFSaFEsW---liaE-Hnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~l  190 (454)
T KOG4332|consen  117 -IT-KHSPQYKVLMVGRVLGGIATSLLFSAFESW---LIAE-HNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLL  190 (454)
T ss_pred             -Hh-hcCCceEEEeehhhhhhHHHHHHHHHHHHH---HHHH-hhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHH
Confidence             22 222356678899999999888776555444   3332 225666544443221    1122    23344444455


Q ss_pred             hccc--cHHHHHHH
Q 011112          170 LTNI--EIDRIFLL  181 (493)
Q Consensus       170 ~~~~--gw~~~f~~  181 (493)
                      .+++  |.-.+|-.
T Consensus       191 vd~~slGPVAPFdA  204 (454)
T KOG4332|consen  191 VDTFSLGPVAPFDA  204 (454)
T ss_pred             HHHhccCCCCchHH
Confidence            5544  33445543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.01  E-value=0.21  Score=52.58  Aligned_cols=153  Identities=16%  Similarity=0.192  Sum_probs=83.9

Q ss_pred             chhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh--hhhhhhcccccccCCCCchhHHHH
Q 011112            9 GVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI--KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         9 ~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~--~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      -++.++.+.+.+|+..+.+ +....=+..+....  .++.+.++-.+..+|.++  -.+...++|++     .|.+..-.
T Consensus        22 E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~--gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-----s~~~lFy~   94 (491)
T PF03219_consen   22 ELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ--GAEVIPFLKVWGVLPVAILFTILYSKLSNRL-----SREKLFYI   94 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHH
Confidence            3566666778888877774 44332111111112  456667766667778765  45789999986     33334333


Q ss_pred             HHHHHHHHHHHHhh--cccc----hh---------------------hHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhh
Q 011112           86 STVLSLVPWLILGL--NAFF----RS---------------------STWHLIVLLTAQN-LGSAMADVVVDAMIAEAAK  137 (493)
Q Consensus        86 ~~~l~~~~~~~~~~--~~~~----~~---------------------~~~~l~~~~~l~~-~~~~~~~~~~~ali~~~~~  137 (493)
                      ....+.....++++  .|..    ++                     ..|...+..+..- .|.-.....-.+++.|.++
T Consensus        95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt  174 (491)
T PF03219_consen   95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT  174 (491)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            33333333333332  2210    00                     0011111111111 1222222234667777774


Q ss_pred             hhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 011112          138 SERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT  171 (493)
Q Consensus       138 ~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~  171 (493)
                         .+|..|..+++..+.++|.+++..+..++.+
T Consensus       175 ---~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  175 ---VEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               5888899999999999999998888777766

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.94  E-value=0.019  Score=57.07  Aligned_cols=125  Identities=14%  Similarity=0.118  Sum_probs=78.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHH
Q 011112          320 EILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSAL  399 (493)
Q Consensus       320 ~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~  399 (493)
                      +.+|+++.+++.+.+.+.+..++.+.+.|.+.||+|+|+.-+...++..++.+.-   .        .++....+..-.+
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k---~--------~~~~~~L~~GRvl  130 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTK---H--------SSNYPVLLLGRVL  130 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---h--------ccccHHHHHHHHH
Confidence            4589999999999999999999999999999999999998888878777765321   1        1222211111122


Q ss_pred             HHHHHHhhHhHH-HHH----HhhcCCCCchHHHHHHHHHH-HhhhhhhhHhHHHHhHHhhcC
Q 011112          400 VDAVNQFKFMPF-LIL----SGQLCPPGIEGTLFALFMSI-SNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       400 ~~~~~~~~~~~~-~~~----~~~~~p~~~~gt~~gl~~~~-~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      .+......+.+. .-+    -.+-.|++..+..++...+. +.+....++.++-.+.+..|.
T Consensus       131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~  192 (354)
T PF05631_consen  131 GGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF  192 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC
Confidence            222222222221 112    33446777778888877744 334556667777777776654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.89  E-value=0.01  Score=56.59  Aligned_cols=155  Identities=16%  Similarity=0.126  Sum_probs=90.6

Q ss_pred             eeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeeh-
Q 011112          318 QTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYG-  396 (493)
Q Consensus       318 ~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~-  396 (493)
                      +++.+|+|..+...+.....+|.-+| ++.|.+.|+.|.+..+.++.+...++... .++....  .  ++....+..+ 
T Consensus        28 Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~-~~l~~~~--~--i~~~~~~~~~~  101 (250)
T PF06813_consen   28 LKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGL-LWLAVSG--R--IPSLPVWLMCL  101 (250)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHHHhC--c--cCccchHHHHH
Confidence            44569999999999988888888775 77899999999999999999888876543 2322211  1  1211222111 


Q ss_pred             -hHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHH-HHhhh
Q 011112          397 -SALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISI-QALCT  474 (493)
Q Consensus       397 -~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~-~~~~~  474 (493)
                       .++......+...+......+-.| ++||++.|+.-+...+++.+=..+...   .++   +|.+.+..+..+ ...++
T Consensus       102 ~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~---~f~---~~~~~fll~la~~~~~v~  174 (250)
T PF06813_consen  102 FLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSA---FFG---DDPSSFLLFLAVLPAVVC  174 (250)
T ss_pred             HHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHH---HcC---CChHHHHHHHHHHHHHHH
Confidence             111111112222333334556676 589999999998887776443332221   222   123333333333 44555


Q ss_pred             hhhhhhhhccc
Q 011112          475 FIPIAFLFLIP  485 (493)
Q Consensus       475 ~~~~~~~~~l~  485 (493)
                      ++.+.++...|
T Consensus       175 l~~~~~vr~~~  185 (250)
T PF06813_consen  175 LVAMFFVRPVP  185 (250)
T ss_pred             HHHhhheeccC
Confidence            66666665555

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.87  E-value=0.0011  Score=65.57  Aligned_cols=124  Identities=14%  Similarity=0.068  Sum_probs=79.6

Q ss_pred             hhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchh
Q 011112           63 PLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAA  142 (493)
Q Consensus        63 ~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~  142 (493)
                      .+.+++.||+     +||+.+.++.++++++.+.+....+......+++..|++.    ....-+.+.+..|+.   |..
T Consensus       399 LIt~~iverl-----GRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafi----sg~fqvaYvYtPEVy---PTa  466 (528)
T KOG0253|consen  399 LITGVIVERL-----GRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFI----SGAFQVAYVYTPEVY---PTA  466 (528)
T ss_pred             hHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH----hchheEEEEecCccc---chh
Confidence            4689999995     7889999999999988877766543211222233344332    222234456778888   458


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhccc-ccc
Q 011112          143 FAGDLQSLSWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVK-ENR  200 (493)
Q Consensus       143 ~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~-e~~  200 (493)
                      .|+...|....+.-+|+++.|+++-....+.  ..+..+.+.+.++..+...++| |++
T Consensus       467 vRatgvGtcSsmaRIggI~~p~iA~~~e~s~--sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  467 VRATGVGTCSSMARIGGIFSPVIAMRAELST--SLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             hhhcchhhhhhHHhhhhhhhhHHHHHhccce--eehHHHHHHHHHHHHHHheeeeeccC
Confidence            9999999999999999999999993222232  2233344545555555555555 443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.68  E-value=0.0087  Score=62.14  Aligned_cols=179  Identities=15%  Similarity=0.094  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHhcccCCCcceeeee-eccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHh
Q 011112          294 LRPMAWFFLAHVAVPNLSTVMFYYQ-TEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKL-RRILLLTQVGLSILS  371 (493)
Q Consensus       294 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~-r~~l~~~~~~~~~~~  371 (493)
                      +...+..|+...........+..|+ ..+.+-+.+..|++.....++-.+++++++....|.+. |+.++.+.+++.++.
T Consensus        37 ~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~  116 (488)
T KOG2325|consen   37 YLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGN  116 (488)
T ss_pred             HHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHH
Confidence            3344444554444444444444444 33578888899999888999999999999999988775 888888888888887


Q ss_pred             hhhhhheeccccccCccCceEeeehhHHHHHHHHh---hHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHH
Q 011112          372 FLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQF---KFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAG  448 (493)
Q Consensus       372 l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~  448 (493)
                      ++.+.+.+..+     ...++.+    +.-++.++   .....-+|++...-++.|.++++..+...-+|..+||.++..
T Consensus       117 llY~~l~~~~~-----~~~y~mL----~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  117 LLYLALAYVPN-----GVKYLML----VARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHhccc-----chHHHHH----HHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence            66544333211     1122211    12222222   222334677777777888888888777677777777777665


Q ss_pred             hHHhh--cC--CC-CCccchHHHHHHHHhhhhhhhhhh
Q 011112          449 LASSL--SI--SS-GSFDNLLLGISIQALCTFIPIAFL  481 (493)
Q Consensus       449 l~~~~--g~--~~-~~~~~~~~~~~~~~~~~~~~~~~~  481 (493)
                      +....  |+  .. -.++.+.....+.++++++.++.+
T Consensus       188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i  225 (488)
T KOG2325|consen  188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVII  225 (488)
T ss_pred             HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHH
Confidence            55421  11  11 233444444445555555554443

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.66  E-value=0.006  Score=46.87  Aligned_cols=56  Identities=16%  Similarity=0.190  Sum_probs=45.8

Q ss_pred             CcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011112          311 STVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGL  367 (493)
Q Consensus       311 ~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~  367 (493)
                      .+..+.|+. +.|+|+.+.|++..+..+..+++.+++|.+.||.++++.+.....++
T Consensus        20 ~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   20 YPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            333445554 48999999999999999999999999999999999999887765543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.65  E-value=0.1  Score=45.95  Aligned_cols=102  Identities=9%  Similarity=0.077  Sum_probs=74.1

Q ss_pred             HhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 011112           56 FFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAE  134 (493)
Q Consensus        56 ~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~  134 (493)
                      .....+ +++...+.+++     +.|+.++++.+..++-..... .+    +.+.++..-.+.|++.+...+.--.++.+
T Consensus        47 Y~~~~~s~l~~P~iv~~l-----g~K~sm~lg~~~y~~y~~~~~-~~----~~~~l~~~s~l~G~~~a~lW~aqg~ylt~  116 (156)
T PF05978_consen   47 YGSFAISCLFAPSIVNKL-----GPKWSMILGSLGYAIYIASFF-YP----NSYTLYPASALLGFGAALLWTAQGTYLTS  116 (156)
T ss_pred             HHHHHHHHHhHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHH-hh----hHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence            334444 56667777774     678888888887776554432 22    34566777788999999999888888887


Q ss_pred             HhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011112          135 AAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYAL  170 (493)
Q Consensus       135 ~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~  170 (493)
                      ..+   ++++++-.++++.....+.++|.++.-.+.
T Consensus       117 ~s~---~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  117 YST---EETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             cCC---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            764   478888999999998888888877765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.44  E-value=1.4  Score=45.72  Aligned_cols=150  Identities=13%  Similarity=0.169  Sum_probs=88.3

Q ss_pred             hhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCC---HhhHHHHHHHHHhhHhh--hhhhhhcccccccCCCCchhHH
Q 011112           10 VSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFS---PSASQFVSAVAFFPWSI--KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus        10 ~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s---~~~~g~~~s~~~l~~~~--~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      ++.++.+.+..++.++.+ +..     .++|.+.++   ++.+.++-++..+|.++  .++.+++++++     .|.+.+
T Consensus        26 ~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-----t~~~vF   95 (509)
T COG3202          26 LKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-----TREKVF   95 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-----CHHHHH
Confidence            444554666666666654 332     346666655   45567777777787764  67899999985     344444


Q ss_pred             HHHHHHHHHHHHHHhhc--c-------cc----------h-h--------hHHHHHHHHHHHHhhhhhH-HHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILGLN--A-------FF----------R-S--------STWHLIVLLTAQNLGSAMA-DVVVDAMIAE  134 (493)
Q Consensus        84 i~~~~l~~~~~~~~~~~--~-------~~----------~-~--------~~~~l~~~~~l~~~~~~~~-~~~~~ali~~  134 (493)
                      -.....+....+++++.  |       +.          + .        +.|...+...+.-+=.+.+ .-.-.....|
T Consensus        96 ~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNe  175 (509)
T COG3202          96 YIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANE  175 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444432  2       10          0 0        1123333333332222222 2245677778


Q ss_pred             HhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011112          135 AAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN  172 (493)
Q Consensus       135 ~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~  172 (493)
                      +++.   +|..|..+++....+++..++..+..++..+
T Consensus       176 itt~---~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         176 ITTI---EEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             hhhH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            7754   8888999999999999999998888888763

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.04  E-value=2.3  Score=44.25  Aligned_cols=115  Identities=12%  Similarity=-0.017  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheecccc-cc--CccCceEeeehhHHHHHHHHhhHh
Q 011112          333 RVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNL-TV--GISDKTMVLYGSALVDAVNQFKFM  409 (493)
Q Consensus       333 ~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~-~~--g~~~~~~~l~~~~~~~~~~~~~~~  409 (493)
                      ....+++-.+|..+..+..-...+.+.+.+..+...+...+ +.+....+. ..  ..++.++.+....+.+..++....
T Consensus       313 ~~~fNvgD~vGR~~~~~~~~p~~~~~~l~i~s~~R~iFIPl-f~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s  391 (437)
T TIGR00939       313 FLLFNLFDWLGRSLTSKFMWPDEDSRWLPILSFLRVLFIPL-FLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGS  391 (437)
T ss_pred             HHHHHHHHHHHhhhhheeEeeCCCccchHHHHHHHHHHHHH-HHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHH
Confidence            56677777777765543211111112454555555543211 112111100 00  012222222223334444544333


Q ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHH
Q 011112          410 PFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAG  448 (493)
Q Consensus       410 ~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~  448 (493)
                      -.+.+..+..++++|-.+-.+++..-.+|-..|+.++-.
T Consensus       392 ~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       392 LSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567777888888888888877777777777765433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=95.99  E-value=0.0045  Score=62.98  Aligned_cols=130  Identities=15%  Similarity=0.119  Sum_probs=93.2

Q ss_pred             hhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHH----HHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 011112           63 PLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLI----VLLTAQNLGSAMADVVVDAMIAEAAKS  138 (493)
Q Consensus        63 ~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~----~~~~l~~~~~~~~~~~~~ali~~~~~~  138 (493)
                      ++...++|++     +||+..+.+.++.++..+.++...++..+...++    +..++..+|-...   .-.+-+|.+  
T Consensus       366 w~tv~~id~i-----GRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~t---tfivpaE~F--  435 (538)
T KOG0252|consen  366 WFTVYFIDII-----GRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNAT---TFIVPAEIF--  435 (538)
T ss_pred             eEEEEEeehh-----hhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCce---eEEeehhhc--
Confidence            3568899984     7888888888888888888887765211222223    3334444443222   112335666  


Q ss_pred             hchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc-----cccHHHHHHHHHHHHHHHHHHhhccccccccc
Q 011112          139 ERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT-----NIEIDRIFLLFTVLPAIQLLSCGLVKENRVST  203 (493)
Q Consensus       139 ~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~-----~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~  203 (493)
                       |.+-||..-|+.....=+|.++|...-+++.+     ..+.|++|++.+.+..+..+..+++||++...
T Consensus       436 -ParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~  504 (538)
T KOG0252|consen  436 -PARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKGKS  504 (538)
T ss_pred             -hHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccccC
Confidence             56999999999999999999999999999988     67889999998877766667778889887544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.99  E-value=0.044  Score=57.02  Aligned_cols=133  Identities=17%  Similarity=0.167  Sum_probs=71.0

Q ss_pred             eeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----hhHHHH-HHHHHHHHHhhhhhhheeccccccCccC
Q 011112          315 FYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLK----LRRILL-LTQVGLSILSFLDIVLVSRMNLTVGISD  389 (493)
Q Consensus       315 ~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~----~r~~l~-~~~~~~~~~~l~~~~~~~~~~~~~g~~~  389 (493)
                      .+|+++++|+|+.+...+.....+.-.+ .+++|.+.|-++    +||..+ ++.++..++ ...+.......     ..
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~-~~~~~~~~~~~-----~s   85 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVS-ALVLALLPASE-----SS   85 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHH-HHHHHhccccc-----ch
Confidence            4566788999998887765544443333 466788888664    444444 344433222 22222221100     11


Q ss_pred             ceEeeehhHHHHHHHHhhHhHHHHHHhhcC---CCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          390 KTMVLYGSALVDAVNQFKFMPFLILSGQLC---PPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       390 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      ........++......+.-+..=++..|..   |++ +|...+.......+|+.++..++|.+.+..+.
T Consensus        86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~  153 (433)
T PF03092_consen   86 AAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGP  153 (433)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC
Confidence            111111111111111122222223444444   443 78888888889999999999999998887654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.95  E-value=0.059  Score=58.88  Aligned_cols=161  Identities=13%  Similarity=0.047  Sum_probs=87.9

Q ss_pred             eeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCce-Ee
Q 011112          316 YYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLK-RLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKT-MV  393 (493)
Q Consensus       316 ~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~-~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~-~~  393 (493)
                      .|+.+.+|++......+........-+...+++.+.| ++|+++.+..+.++..++..+. .... .+......... .+
T Consensus        12 lYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~ll-ai~a-~~~~~~~~~~~~~l   89 (654)
T TIGR00926        12 LYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALL-SFGA-IPSSGHPLHDLLDL   89 (654)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-Hhcc-CcccccchHHHHHH
Confidence            3444558888776665533333333333455566666 5688999998888877754322 1111 10000000000 11


Q ss_pred             eehhHHHHHHHHhhHhH-HHHHHhhcCCCC---chHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHH
Q 011112          394 LYGSALVDAVNQFKFMP-FLILSGQLCPPG---IEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISI  469 (493)
Q Consensus       394 l~~~~~~~~~~~~~~~~-~~~~~~~~~p~~---~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~  469 (493)
                      ++..+  ...+.-..-| ..++..+..+++   .+-+.+.++....|+|+.++..+.+.+.+.++-. +.+.+++..+.+
T Consensus        90 ~gLaL--ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f-g~~~~~~~aF~i  166 (654)
T TIGR00926        90 LGLAL--IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCF-GCQDCYPLAFGV  166 (654)
T ss_pred             HHHHH--HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCcchHHHHHH
Confidence            11111  1222111222 245566666543   4667888888899999888888888887543210 123457778888


Q ss_pred             HHhhhhhhhhhh
Q 011112          470 QALCTFIPIAFL  481 (493)
Q Consensus       470 ~~~~~~~~~~~~  481 (493)
                      .+++.+++++..
T Consensus       167 ~~i~m~ia~lvf  178 (654)
T TIGR00926       167 PAILMILALIVF  178 (654)
T ss_pred             HHHHHHHHHHHH
Confidence            888777776553

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=95.86  E-value=0.11  Score=51.31  Aligned_cols=123  Identities=15%  Similarity=0.202  Sum_probs=70.9

Q ss_pred             hcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchh
Q 011112           67 ILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGD  146 (493)
Q Consensus        67 ~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~  146 (493)
                      .+.|-.     |-||.++.-.+.....+..+-+.++    .+..=++-+.-|... .+.+++.+++=+..   +++++.+
T Consensus        64 lLTD~l-----rYKPvivlq~ls~v~~w~~lv~g~s----V~~mQvlE~FyG~~t-AaEIAYysYIYs~V---d~~~Yqr  130 (433)
T KOG3810|consen   64 LLTDYL-----RYKPVVVLQALSGVPVWIMLVFGPS----VKAMQVLEFFYGPAT-AAEIAYYSYIYSKV---DPEMYKR  130 (433)
T ss_pred             HHhhhh-----hcceeeeeeccchhHHHHHHHhcCC----chheeeehhhcChHH-HHHHhhhheeeeec---CHHHHHH
Confidence            577863     6788888777666666665555442    222112222223222 33455555554443   6789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011112          147 LQSLSWLAMAFGGICGSLLGGYALTN--IEIDRIFLLFTVLPAIQLLSCGLVKENRVS  202 (493)
Q Consensus       147 ~~g~~~~~~~~G~~lg~~i~g~l~~~--~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~  202 (493)
                      +.|....+.-.|-.+|...+-.+.+-  .+++..=++.-....+..+..+++|.+++.
T Consensus       131 vt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rS  188 (433)
T KOG3810|consen  131 VTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRS  188 (433)
T ss_pred             HHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchh
Confidence            99999999999999998888888753  334433333222222222344566655533

>PRK03612 spermidine synthase; Provisional

Probab=95.84  E-value=0.92  Score=48.35  Aligned_cols=160  Identities=17%  Similarity=0.094  Sum_probs=82.4

Q ss_pred             HHHHHHHHhHHHh-HHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHH---H
Q 011112           16 ICLIYFTQGFRSF-VWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVL---S   90 (493)
Q Consensus        16 ~~~~~f~~g~~~~-~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l---~   90 (493)
                      +....|+.|+.++ .-....-++.-.+|-+..+.+..+++++.+.++ +.+.|.+.++      ..+++...-..+   .
T Consensus        19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~------~~~~~~~~e~~i~l~~   92 (521)
T PRK03612         19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD------AAAGFVAVELLLALLG   92 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHH
Confidence            4455667777653 223333445556898999999999999999888 3455555532      122222221111   1


Q ss_pred             HHHHHHHhhcccchhhH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 011112           91 LVPWLILGLNAFFRSST-WHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYA  169 (493)
Q Consensus        91 ~~~~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l  169 (493)
                      .++..++.......... .......++.++..|...|....+..+.    ..++-|+..|..+..-++|+++|.++.+++
T Consensus        93 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~----~~~~~g~~~g~ly~~ntlGa~~G~l~~~~v  168 (521)
T PRK03612         93 GLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRI----RDQHLGHNVATVLAADYLGALVGGLAFPFL  168 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence            11111111110000011 1111222234455555544433333221    112356778888999999999999998866


Q ss_pred             h-ccccHHHHHHHHHHH
Q 011112          170 L-TNIEIDRIFLLFTVL  185 (493)
Q Consensus       170 ~-~~~gw~~~f~~~~~~  185 (493)
                      . +.+|-....++.+.+
T Consensus       169 Llp~lG~~~t~~~~a~l  185 (521)
T PRK03612        169 LLPRLGLIRTAALTGSL  185 (521)
T ss_pred             HHHhcchHHHHHHHHHH
Confidence            5 466654444444433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.92  E-value=0.19  Score=44.25  Aligned_cols=104  Identities=12%  Similarity=0.059  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHH
Q 011112          336 GWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILS  415 (493)
Q Consensus       336 ~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  415 (493)
                      ......+++++..-+.++.|.|+.++++.++..+-....  + .        ++.+..+..+.+.++.....+.+...++
T Consensus        46 ~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~--~-~--------~~~~~l~~~s~l~G~~~a~lW~aqg~yl  114 (156)
T PF05978_consen   46 LYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF--F-Y--------PNSYTLYPASALLGFGAALLWTAQGTYL  114 (156)
T ss_pred             HHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH--H-h--------hhHHHHHHHHHHHhhhhHHhhHhhhHHH
Confidence            333445555666677788999999999988876532111  1 1        2223333334445555556666666788


Q ss_pred             hhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhH
Q 011112          416 GQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLA  450 (493)
Q Consensus       416 ~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~  450 (493)
                      .+..+++.+++..+++-.+.+.+..+|+.+.-.+.
T Consensus       115 t~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  115 TSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888877655444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=94.89  E-value=0.85  Score=47.82  Aligned_cols=127  Identities=9%  Similarity=-0.039  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheecccccc-----------CccC---
Q 011112          325 EASFLGTARVVGWVGL-MLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTV-----------GISD---  389 (493)
Q Consensus       325 s~~~~gl~~~~~~~~~-~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~-----------g~~~---  389 (493)
                      +++....+.....+.+ ++..++++++.+|.++++.+...........++............           ..+.   
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            3455666655444433 344788999999999999887765554443222111111100000           0000   


Q ss_pred             -------ceEeeehhHHHHHHHHhhHh-HHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHH
Q 011112          390 -------KTMVLYGSALVDAVNQFKFM-PFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       390 -------~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~  451 (493)
                             .|............+.+... -.+.+++|.+.+++..+.++++...+|+|..+|+.+...+.+
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00000011112222222222 346789999999999999999999999999999888777764

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=94.46  E-value=0.29  Score=52.57  Aligned_cols=156  Identities=18%  Similarity=0.036  Sum_probs=104.8

Q ss_pred             HHHHHHHHhhhCCCHhhHHHHHHHHHhhHhhh-hhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhccc-------
Q 011112           31 TAVSYQLKDKLKFSPSASQFVSAVAFFPWSIK-PLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAF-------  102 (493)
Q Consensus        31 ~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~~-~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~-------  102 (493)
                      ..+..|+.+++|.+...+.-..+.+.-.-..- .+.+.++|.+    .+|=+.+.++.++..++..++.+...       
T Consensus        58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f----~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~  133 (571)
T KOG1237|consen   58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSF----LGRYFTINIGSLISLLGLFGLTLSAMIPALLPF  133 (571)
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence            34456778889988866655555554333333 5789999986    46666777777766666444332210       


Q ss_pred             ------c-----h-h--hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhh-c--hhcchhHHHHHHHHHHHHHHHHHHH
Q 011112          103 ------F-----R-S--STWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSE-R--AAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus       103 ------~-----~-~--~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~-~--~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                            .     + .  ....+...+-+.++|.+..-+...+.-+|..++. |  ...+.+.+.+++...++|..++..+
T Consensus       134 ~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~  213 (571)
T KOG1237|consen  134 MCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV  213 (571)
T ss_pred             cccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH
Confidence                  0     0 1  1122334444566788888888888888888632 2  2334478899999999999999999


Q ss_pred             HHHhhccccHHHHHHHHHHHHHHHH
Q 011112          166 GGYALTNIEIDRIFLLFTVLPAIQL  190 (493)
Q Consensus       166 ~g~l~~~~gw~~~f~~~~~~~~l~~  190 (493)
                      ..++.+..+|.+.|-+..+...+..
T Consensus       214 ~vyiq~~~~w~lgf~i~~~~~~lai  238 (571)
T KOG1237|consen  214 LVYIQDNVGWKLGFGIPTVLNALAI  238 (571)
T ss_pred             HHhhhhcccceeeccHHHHHHHHHH
Confidence            9999999999999888776554444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=94.27  E-value=0.17  Score=52.89  Aligned_cols=131  Identities=13%  Similarity=0.135  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHH
Q 011112          335 VGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLIL  414 (493)
Q Consensus       335 ~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~  414 (493)
                      ..++..++.++..|.+.|++|+|..+....+...+..+.... .          ..++.+........  ...+...+++
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~-~----------~~~~~~~~~l~g~~--~~~~s~~~a~  136 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF-Q----------GYWFFLLLGLSGGF--SAIFSVGFAY  136 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH-H----------HHHHhhhcccccch--hhhhhhhhhh
Confidence            456677788889999999999999888877666554322111 1          11111100000000  1112234567


Q ss_pred             HhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhhhhh-hcccC
Q 011112          415 SGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFL-FLIPK  486 (493)
Q Consensus       415 ~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  486 (493)
                      +++.+..+.|...+|+.+.....+..++|.+++.+...+|+..        .+.+.....++...+. ..+||
T Consensus       137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~--------~f~ia~~~~~~~~~y~~~~l~E  201 (463)
T KOG2816|consen  137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIAL--------VFLIAAASGILSLLYMLLFLPE  201 (463)
T ss_pred             eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchH--------HHHHHHHHHHHHHHHHhhcccc
Confidence            8899999999999999999999999999999999999876532        3444444455554443 35554

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.00  E-value=11  Score=38.63  Aligned_cols=32  Identities=13%  Similarity=-0.179  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 011112          336 GWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSI  369 (493)
Q Consensus       336 ~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~  369 (493)
                      .++...+|.....++..  +.+|.+.+..+...+
T Consensus       292 fN~~d~vG~~~a~~~~~--~~~r~l~i~v~lR~l  323 (406)
T KOG1479|consen  292 FNVFDLIGSILAALLTW--PDPRKLTIPVLLRLL  323 (406)
T ss_pred             hHHHHHhhhhhhhcccC--CCCceehHHHHHHHH
Confidence            67788888776665433  334445555555544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.71  E-value=6.6  Score=40.95  Aligned_cols=155  Identities=17%  Similarity=0.162  Sum_probs=83.6

Q ss_pred             hhchhHHHHHHHHHHHHhHH-HhHHHHHHH--HHHhhhCCCHhhHHHHHHH-HHhhHhh-hhhhhhcccccccCCCCchh
Q 011112            7 VFGVSFLWLICLIYFTQGFR-SFVWTAVSY--QLKDKLKFSPSASQFVSAV-AFFPWSI-KPLYGILSDCIPIKGRKRIP   81 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~--~l~~~~g~s~~~~g~~~s~-~~l~~~~-~~~~G~lsDr~~~~g~~rr~   81 (493)
                      .+..+.++.+...++.+|+. ++.....+.  ...+..+.+...+-.+.++ ...+..+ +..++.+++|.+  +.+|++
T Consensus       236 l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir--~fg~~~  313 (461)
T KOG3098|consen  236 LLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIR--GFGRKP  313 (461)
T ss_pred             HhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhh--hcccCc
Confidence            34455555566777778875 322111111  1122344444433222222 2233444 578899999864  567888


Q ss_pred             HHHHHHHHHHHHHHHHhhccc--c------------hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhH
Q 011112           82 YLVISTVLSLVPWLILGLNAF--F------------RSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDL  147 (493)
Q Consensus        82 ~ii~~~~l~~~~~~~~~~~~~--~------------~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~  147 (493)
                      .+..+..+..+..++..+...  .            ..++....+.-++.|++-+......+.++.++.    +++|..+
T Consensus       314 ~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~----~~~~~~~  389 (461)
T KOG3098|consen  314 TVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY----PDDRAQA  389 (461)
T ss_pred             chhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh----cCchHHH
Confidence            888887776666555433211  1            012323334444556655555555555555655    3667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 011112          148 QSLSWLAMAFGGICGSLLGG  167 (493)
Q Consensus       148 ~g~~~~~~~~G~~lg~~i~g  167 (493)
                      .+++..-+.++..++.....
T Consensus       390 fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  390 FSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHHHHHHHHHHHHHHhhhhh
Confidence            77777777777766544443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=92.21  E-value=4.1  Score=41.70  Aligned_cols=146  Identities=18%  Similarity=0.126  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHhHHHhHHHHHHHHH--HhhhCCCHhhHHHHHHHHHhhHhhh-hhhhhcccccccCCCCchhHHHHHHH
Q 011112           12 FLWLICLIYFTQGFRSFVWTAVSYQL--KDKLKFSPSASQFVSAVAFFPWSIK-PLYGILSDCIPIKGRKRIPYLVISTV   88 (493)
Q Consensus        12 ~~~~~~~~~f~~g~~~~~~~~~~~~l--~~~~g~s~~~~g~~~s~~~l~~~~~-~~~G~lsDr~~~~g~~rr~~ii~~~~   88 (493)
                      ..+.+.+.||.+.+.   ++.+.+-+  .+++.-...+..+...++.++..++ -- ..+. |     .||.+++.+-+.
T Consensus       248 ymiPL~lVY~aEY~I---nqGv~~tl~fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS-~~~~-r-----ir~lwils~LQ~  317 (402)
T PF02487_consen  248 YMIPLFLVYFAEYFI---NQGVAPTLLFPNSFFSPRDQYRWYQLLYQLGVFISRSS-LPFF-R-----IRRLWILSLLQV  317 (402)
T ss_pred             HHHHHHHHHHHHHHH---HhchHHHhcCCccCCCHHHHHHHHHHHHHHHHhhhhcc-eeee-e-----hhhHHHHHHHHH
Confidence            334456667766542   22222221  2233333455566666666554431 10 1111 2     234333333333


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 011112           89 LSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGY  168 (493)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~  168 (493)
                      +..+.+++.+...- -.+.|..++..+..|+..|..++-....+.|-.   ++++|..++|....+-++|..++.+++-+
T Consensus       318 ~nl~~~~l~s~~~f-ipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~---~~~~REFslg~vsvsds~GI~lAgll~l~  393 (402)
T PF02487_consen  318 INLVFLLLQSWYRF-IPSIWIVFVLIFYEGLLGGASYVNTFYRISEEV---PPEDREFSLGAVSVSDSLGILLAGLLGLP  393 (402)
T ss_pred             HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            33333333332211 124555666666778888888877777766643   56899999999999999999999888876


Q ss_pred             hhc
Q 011112          169 ALT  171 (493)
Q Consensus       169 l~~  171 (493)
                      +.+
T Consensus       394 le~  396 (402)
T PF02487_consen  394 LEP  396 (402)
T ss_pred             HHH
Confidence            643

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=91.98  E-value=0.47  Score=37.02  Aligned_cols=55  Identities=15%  Similarity=0.100  Sum_probs=46.5

Q ss_pred             eeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 011112          316 YYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSIL  370 (493)
Q Consensus       316 ~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~  370 (493)
                      +.+.++.++|..+.|++...+.+|-++|++...++.++.+.++.+..+.+...++
T Consensus        16 P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~   70 (85)
T PF06779_consen   16 PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLS   70 (85)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            4556778999999999999999999999999998888878788888777766654

Note that many members are hypothetical proteins.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=91.21  E-value=9.1  Score=39.30  Aligned_cols=124  Identities=12%  Similarity=0.015  Sum_probs=72.4

Q ss_pred             eeeeec-cCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceE
Q 011112          315 FYYQTE-ILNLEASFLGT-ARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTM  392 (493)
Q Consensus       315 ~~~~~~-~~g~s~~~~gl-~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~  392 (493)
                      ..|+.+ +.|++.++..- +.-+..=..+..-+....+.|..+.|.+++.+.+...+...+.++. .        +..  
T Consensus        27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-~--------sv~--   95 (412)
T PF01770_consen   27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-T--------SVL--   95 (412)
T ss_pred             hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-C--------cHH--
Confidence            344444 48999887653 2211212222333344556788888999988887766654332211 0        100  


Q ss_pred             eeehhHHHHHHHHh---hHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHh
Q 011112          393 VLYGSALVDAVNQF---KFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASS  452 (493)
Q Consensus       393 ~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~  452 (493)
                         ..-+.++..+.   .-.+..+++-...|+++--+..+...+..-+|..+|+.+|-.+.+.
T Consensus        96 ---~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~  155 (412)
T PF01770_consen   96 ---AMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF  155 (412)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               11122333332   2233456777788888877787888888888888888888877763

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=90.38  E-value=0.068  Score=57.16  Aligned_cols=162  Identities=13%  Similarity=0.080  Sum_probs=1.3

Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheecccc-c-cC----------
Q 011112          319 TEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNL-T-VG----------  386 (493)
Q Consensus       319 ~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~-~-~g----------  386 (493)
                      ++.++++..+.|++.....++.++..++..++.+|..+=|.+.++.++++++.++.. +-+.... . ..          
T Consensus        30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~-lPhf~~~~y~~~~~~~~~~~~~  108 (539)
T PF03137_consen   30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA-LPHFLSGPYSYEEASNSNGNSS  108 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh-ccHhhcCCCccccccccccccc
Confidence            445899999999999989999988888888888876666777788888877654321 1111000 0 00          


Q ss_pred             ----cc---------------------CceEeeehhHHHHHHHHhhHhHHH----HHHhhcCCCCchHHHHHHHHHHHhh
Q 011112          387 ----IS---------------------DKTMVLYGSALVDAVNQFKFMPFL----ILSGQLCPPGIEGTLFALFMSISNF  437 (493)
Q Consensus       387 ----~~---------------------~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~gt~~gl~~~~~~l  437 (493)
                          ..                     ..........+.+...++.-.|.+    +|+-|.++++..+.+.|++.+...+
T Consensus       109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l  188 (539)
T PF03137_consen  109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL  188 (539)
T ss_dssp             -------------------------------------------SSS----------------------------------
T ss_pred             cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence                00                     000011112233444444444543    6788889999999999999988888


Q ss_pred             hhhhhHhHHHHhHHhh-cC----------C--CCCccc-hHHHHHHHHhhhhhhhhhh
Q 011112          438 GSTVGSFFGAGLASSL-SI----------S--SGSFDN-LLLGISIQALCTFIPIAFL  481 (493)
Q Consensus       438 g~~~~~~i~g~l~~~~-g~----------~--~~~~~~-~~~~~~~~~~~~~~~~~~~  481 (493)
                      |-.+|=.+|+.+...+ +.          +  ++.|-+ +|..+++.+.+.++..+-+
T Consensus       189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl  246 (539)
T PF03137_consen  189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL  246 (539)
T ss_dssp             ----------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877888777543 11          1  123323 6677776666554443333

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=88.94  E-value=4.1  Score=38.35  Aligned_cols=118  Identities=14%  Similarity=0.154  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHh
Q 011112          327 SFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQF  406 (493)
Q Consensus       327 ~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~  406 (493)
                      ...+.......++..++.++.|++.||.|+|+.+..+......+.+. ......       ......+..........+.
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~g~~~~~  110 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLL-LALAPN-------VGLALLLILRLLQGLGGGG  110 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHH-HHhCcc-------chHHHHHHHHHHHHhhhHH
Confidence            35666666666777777788999999998887776666542222111 111110       0011111111111222222


Q ss_pred             hHhHHHHHHhhcCCC-CchHHHHHHHHH-HHhhhhhhhHhHHHHhHHh
Q 011112          407 KFMPFLILSGQLCPP-GIEGTLFALFMS-ISNFGSTVGSFFGAGLASS  452 (493)
Q Consensus       407 ~~~~~~~~~~~~~p~-~~~gt~~gl~~~-~~~lg~~~~~~i~g~l~~~  452 (493)
                      ......+++.+..|+ +.++...+.... ...++..+++.+++.+.+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         111 LLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233345778888887 678888888888 5677888888777777765

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=88.71  E-value=0.69  Score=45.09  Aligned_cols=125  Identities=13%  Similarity=0.131  Sum_probs=73.7

Q ss_pred             HHHhhHh-hhhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 011112           54 VAFFPWS-IKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMI  132 (493)
Q Consensus        54 ~~~l~~~-~~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali  132 (493)
                      .-.+|.. +|...-.+-||+|   ++.|-.  +..++.+.++++.++.+    +.+.-+....++.++.+..++..-++.
T Consensus        70 aDilPsL~iKl~~Pff~~rfp---f~~Ri~--~~v~~sa~s~~lVafs~----s~~~sL~GV~~aSissGlGEiTFL~ls  140 (409)
T KOG3880|consen   70 ADILPSLAIKLTAPFFIHRFP---FGFRIA--LVVLLSALSFFLVAFSN----SVPMSLLGVVFASISSGLGEITFLALS  140 (409)
T ss_pred             hhhhHHHHHHHhchhhhhhcc---cchHHH--HHHHHHhcceEEEEecc----chhHHHhhhhhhhhcCCcceeehhhhh
Confidence            3445654 4777777889875   455533  23334555555555553    455556666777888888887766665


Q ss_pred             HHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHHHHHHhhc
Q 011112          133 AEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT--NIEIDRIFLLFTVLPAIQLLSCGL  195 (493)
Q Consensus       133 ~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~--~~gw~~~f~~~~~~~~l~~i~~~~  195 (493)
                      +.+-+        .+.+.+..+...++++|..--..+.+  .++-|...+++-.++++.+...++
T Consensus       141 s~Y~~--------~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~  197 (409)
T KOG3880|consen  141 SRYPS--------IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFF  197 (409)
T ss_pred             ccCCC--------ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHh
Confidence            44321        12233333344445555555555555  345778888888888877765543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=87.22  E-value=10  Score=36.27  Aligned_cols=31  Identities=16%  Similarity=0.118  Sum_probs=21.2

Q ss_pred             CCCCchHHHHHHHHHHHhhhhhhhHhHHHHh
Q 011112          419 CPPGIEGTLFALFMSISNFGSTVGSFFGAGL  449 (493)
Q Consensus       419 ~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l  449 (493)
                      ..|++-|..+|+.=.++++.-++.-.+-+.+
T Consensus       235 ~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~i  265 (267)
T PF07672_consen  235 YNPKKIGIQFGLIWGFGYIFYTIYDIILSVI  265 (267)
T ss_pred             CCcceehhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677888888887777777666665554433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.81  E-value=4.5  Score=44.42  Aligned_cols=69  Identities=13%  Similarity=0.145  Sum_probs=48.4

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHh-hh-hhhhhcccccccCC
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWS-IK-PLYGILSDCIPIKG   76 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~-~~-~~~G~lsDr~~~~g   76 (493)
                      ++.+......+...++.+.. -..+++|.|++.+||.+.+.++.+++...++.+ ++ .+.|.+.-|+++..
T Consensus       389 l~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~  460 (735)
T KOG3626|consen  389 LSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSA  460 (735)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccH
Confidence            34444444445555544432 234677899999999999999999988888765 45 57899999875443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=83.77  E-value=15  Score=35.38  Aligned_cols=132  Identities=14%  Similarity=0.185  Sum_probs=73.7

Q ss_pred             eeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEee
Q 011112          315 FYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVL  394 (493)
Q Consensus       315 ~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l  394 (493)
                      .||+...+|+.+.++|.+.+.+...+++.+.+.+-+.||.|+|+.-+.-.+...++.+.      -.+     |+....+
T Consensus        60 vYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiT------KhS-----pqYkVLm  128 (454)
T KOG4332|consen   60 VYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCIT------KHS-----PQYKVLM  128 (454)
T ss_pred             eeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHh------hcC-----CceEEEe
Confidence            45555668999999999888888888888888999999999988655444444443211      111     2222122


Q ss_pred             ehhHHHHHHHHhhHhHH-HHHHhhcC-----CCCchHHHHHHHHHHHh-hhhhhhHhHHHHhHHhhcCCC
Q 011112          395 YGSALVDAVNQFKFMPF-LILSGQLC-----PPGIEGTLFALFMSISN-FGSTVGSFFGAGLASSLSISS  457 (493)
Q Consensus       395 ~~~~~~~~~~~~~~~~~-~~~~~~~~-----p~~~~gt~~gl~~~~~~-lg~~~~~~i~g~l~~~~g~~~  457 (493)
                      .+-.+.+..-...+.+. .-++.|..     |++--...++-..++.| +-..+++..|-.+.|.++...
T Consensus       129 VGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGP  198 (454)
T KOG4332|consen  129 VGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGP  198 (454)
T ss_pred             ehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCC
Confidence            22222222222223332 23455554     33333333333332333 555667777777788776543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=83.67  E-value=0.3  Score=50.09  Aligned_cols=132  Identities=20%  Similarity=0.183  Sum_probs=74.3

Q ss_pred             eeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCChhHHHHHHHHHHHHHhhhhhhheeccccccCc-cC
Q 011112          315 FYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYL----KRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGI-SD  389 (493)
Q Consensus       315 ~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~----~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~-~~  389 (493)
                      ++|.+. +|.+....+.+-..+-+..++-.++.|...    .|+||||.++.....+....+..+....-.-..++. +.
T Consensus        56 tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~  134 (498)
T KOG0637|consen   56 TPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNER  134 (498)
T ss_pred             cHHHHH-cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc
Confidence            445433 788877777764444444444444444444    478999988877666655443321111100000111 11


Q ss_pred             c---eEe----eehhHHHHHHHHhhHhHHHHHHhhcCCCCchHH-HHHHHHHHHhhhhhhhHhHHH
Q 011112          390 K---TMV----LYGSALVDAVNQFKFMPFLILSGQLCPPGIEGT-LFALFMSISNFGSTVGSFFGA  447 (493)
Q Consensus       390 ~---~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt-~~gl~~~~~~lg~~~~~~i~g  447 (493)
                      .   ...    +...-+..+.+.....|.-++..+++.+..+-+ +++.+..+..+|+.+|=..|+
T Consensus       135 ~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  135 KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            1   111    111123345555667788889999988777777 888888888888777655555

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=80.77  E-value=57  Score=33.91  Aligned_cols=129  Identities=13%  Similarity=0.066  Sum_probs=68.6

Q ss_pred             HHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccch---hhH
Q 011112           32 AVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFR---SST  107 (493)
Q Consensus        32 ~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~---~~~  107 (493)
                      .+..|++++ |+|+..+|.+-++-.+.-.. -..+.++.+|++..+-+  .+-+.....+........+.++.+   .+.
T Consensus       280 lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G--~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~  356 (432)
T PF06963_consen  280 LMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAG--LWSLWWQWVCLALCVVSFWAPGSPFSSISA  356 (432)
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH--HHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence            344577764 99999999877665543333 34566677776322111  122222222222222222333211   122


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHH
Q 011112          108 WHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLG  166 (493)
Q Consensus       108 ~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~  166 (493)
                      ..++....+.-+|.=..|...+-++=|..   |+++||...|.=...+++--++-.+++
T Consensus       357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V---~~~~Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  357 YLLLGGIALSRIGLWSFDLAVTQIMQENV---PESERGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhcccC---CHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            23333444444555555655555544444   579999999988888777766654443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	493
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 66/464 (14%), Positives = 127/464 (27%), Gaps = 158/464 (34%)

Query: 8   FGVSFLWL---ICLIYFTQ---GFRSFVWTAVSYQLKDKL----------KFSPSASQFV 51
            G +  W+   +CL Y  Q    F+ F W  +      +           +  P+ +   
Sbjct: 161 SGKT--WVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 52  SAVAFFPWSIKPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAF-FRSSTWHL 110
              +     I  +   L   +  K  +    LV+  V +         NAF         
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLLNVQN--AKAW---NAFNLSCKI--- 268

Query: 111 IVLLTAQNLGSAMADVVVDAMIAEAAK-----SERAAFAGDLQSLSWLAMAFGGICGSLL 165
             LLT +         V D + A                 D +  S L            
Sbjct: 269 --LLTTRFKQ------VTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKY--------- 310

Query: 166 GGYALTNIEIDRIFLLFTVLP----AIQLLSCGLVKENRVSTKVLKEF-SSSNGYHQVNG 220
                 +            LP            ++ E+      +++  ++ + +  VN 
Sbjct: 311 -----LDCRPQD-------LPREVLTTNPRRLSIIAES------IRDGLATWDNWKHVNC 352

Query: 221 N------ESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFK----IRKS-QIPEK---- 265
           +      ES L+  +    E                 ++MF        S  IP      
Sbjct: 353 DKLTTIIESSLNVLE--PAEY----------------RKMFDRLSVFPPSAHIPTILLSL 394

Query: 266 ------------------NNPLVIQWFHSLKAAIYSLYSAFR-QPEILRPMAWFFLAHVA 306
                                LV +       +I S+Y   + + E    +      H  
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL------H-- 446

Query: 307 VPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGY-LKRLKL-RRILLLTQ 364
                +++ +Y       ++  L    +  +       Y++ G+ LK ++   R+ L   
Sbjct: 447 ----RSIVDHYNI-PKTFDSDDLIPPYLDQYF------YSHIGHHLKNIEHPERMTLFRM 495

Query: 365 VGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKF 408
           V L    FL+  +           D T      ++++ + Q KF
Sbjct: 496 VFLD-FRFLEQKI---------RHDSTAWNASGSILNTLQQLKF 529

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 54/360 (15%), Positives = 112/360 (31%), Gaps = 79/360 (21%)

Query: 169 ALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDE 228
            L+  EID I +    +     L   L+ +     +++++F            E +L   
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ---EEMVQKFV-----------EEVLRIN 90

Query: 229 DGFSEEKYNISTKKRKKNKKN---QKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSL- 284
             F         ++     +    Q+ R++    +Q+  K N   +Q +  L+ A+  L 
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 285 -------------------YSAFRQPEILRPMA----WFFLAHVAVPNLSTVMFYYQTEI 321
                                     ++   M     W  L +   P    V+   Q  +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET--VLEMLQKLL 206

Query: 322 LNLEASFLGTARVVGWVGLMLGTYTYNGYLKRL----KLRRILLLTQVGLSILSFLDIV- 376
             ++ ++  T+R      + L  ++    L+RL         LL+          L  V 
Sbjct: 207 YQIDPNW--TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----------LLNVQ 254

Query: 377 ---LVSRMNLTVGISDKTMVL-YGSALVDAVNQFKFMPFLI--LSGQLCPPGIEGTLFAL 430
                +  NL+     K ++      + D ++        +   S  L P  ++  L   
Sbjct: 255 NAKAWNAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLK 309

Query: 431 FMSISNFG-----STVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPIAFLFLIP 485
           ++            T      + +A S+     ++DN    ++   L T I  +   L P
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEP 368

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	493
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.97
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.95
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.94
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.93
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.91
2xut_A	524	Proton/peptide symporter family protein; transport	99.86
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.32
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.11
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.1
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.86
2xut_A	524	Proton/peptide symporter family protein; transport	98.75
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.69
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.67

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.97  E-value=3.7e-30  Score=265.75  Aligned_cols=381  Identities=13%  Similarity=0.022  Sum_probs=263.0

Q ss_pred             hchhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      .+++.++.+...++..++.. ..... .+.+.+++ .|..+.|++.+++.++..+ +|++|+++||+     +||+.++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~   97 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPA   97 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHH-HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-----CchHHHHH
Confidence            34555555666677777764 44444 44556778 9999999999999999887 89999999995     68889999


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +.++.+++.+++++.+....+++.+++.|++.|++.+...+..++++.|..+   +++|++++++......+|.++|+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~---~~~r~~~~~~~~~~~~~g~~~g~~~  174 (451)
T 1pw4_A           98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS---QKERGGIVSVWNCAHNVGGGIPPLL  174 (451)
T ss_dssp             HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT---TTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCC---chhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888721101256678899999999999999999999999884   4899999999999999999999999


Q ss_pred             HHHhhcccc-HHHHHHHHHHHHHHHHHH-hhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhh
Q 011112          166 GGYALTNIE-IDRIFLLFTVLPAIQLLS-CGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKR  243 (493)
Q Consensus       166 ~g~l~~~~g-w~~~f~~~~~~~~l~~i~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (493)
                      ++++.++.| ||+.|++.+++.++..+. .+++||++++.+.+.++    +.+   +..+   ++..   ++      .+
T Consensus       175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~---~~~~---~~------~~  235 (451)
T 1pw4_A          175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE----EYK---NDYP---DDYN---EK------AE  235 (451)
T ss_dssp             HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT----TTC---CC----------------------
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh----hhc---cccc---ccch---hh------hh
Confidence            999988888 999999988777666544 45678766543211000    000   0000   0000   00      00


Q ss_pred             hhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCC
Q 011112          244 KKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILN  323 (493)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g  323 (493)
                      ++       .                      +.++.  ..++.+|+|.++...+..++............+.|.++.+|
T Consensus       236 ~~-------~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  284 (451)
T 1pw4_A          236 QE-------L----------------------TAKQI--FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKH  284 (451)
T ss_dssp             --------------------------------CCTHH--HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSC
T ss_pred             cc-------c----------------------ccccc--hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            00       0                      11111  12456778887766555444333333333445667777789


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHH
Q 011112          324 LEASFLGTARVVGWVGLMLGTYTYNGYLKRL--KLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVD  401 (493)
Q Consensus       324 ~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~--~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~  401 (493)
                      +++.+.++......++.+++.++.+++.||+  ++|+.+..+.++.....++.+....       ..+.+.......+..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g  357 (451)
T 1pw4_A          285 FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP-------AGNPTVDMICMIVIG  357 (451)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC-------TTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc-------ccCHHHHHHHHHHHH
Confidence            9999999998888899999999999999999  9998888776665522222221111       011111111112222


Q ss_pred             HHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhh-hhhhhHhHHHHhHHhhcC
Q 011112          402 AVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNF-GSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~l-g~~~~~~i~g~l~~~~g~  455 (493)
                      ...........+++.+..|++.+|+++|+++.+.++ |..+++.+.|.+.+..|+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~  412 (451)
T 1pw4_A          358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  412 (451)
T ss_dssp             HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            222223333467899999999999999999999999 999999999999997653

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.97  E-value=1.9e-28  Score=252.05  Aligned_cols=351  Identities=12%  Similarity=0.123  Sum_probs=252.9

Q ss_pred             hhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHH
Q 011112           10 VSFLWLICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVIST   87 (493)
Q Consensus        10 ~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~   87 (493)
                      +..++.+...++..++.. .... ..|.+++++|.|..+.|+..+.+.+++.+ +|++|+++||+     +||+.++.+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~~   98 (438)
T 3o7q_A           25 IIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITGL   98 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchHHHHHHH
Confidence            334445566677788764 4444 44556888999999999999999999887 89999999995     6888899999


Q ss_pred             HHHHHHHHHH---hhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHH
Q 011112           88 VLSLVPWLIL---GLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSL  164 (493)
Q Consensus        88 ~l~~~~~~~~---~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~  164 (493)
                      ++.+++.+++   ...+    +++.+++.|++.|++.+...+..++++.|..+   +++|+++.++...+..+|..+|+.
T Consensus        99 ~~~~~~~~~~~~~~~~~----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~g~~  171 (438)
T 3o7q_A           99 FLYALGAALFWPAAEIM----NYTLFLVGLFIIAAGLGCLETAANPFVTVLGP---ESSGHFRLNLAQTFNSFGAIIAVV  171 (438)
T ss_dssp             HHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC---STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccc----cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcC---chhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888887   5543    57888999999999999999999999999884   589999999999999999999999


Q ss_pred             HHHHhh-cccc-------------------------HHHHHHHHHHHHHHHHHHhhcc--ccccccchhhhcccccCCCc
Q 011112          165 LGGYAL-TNIE-------------------------IDRIFLLFTVLPAIQLLSCGLV--KENRVSTKVLKEFSSSNGYH  216 (493)
Q Consensus       165 i~g~l~-~~~g-------------------------w~~~f~~~~~~~~l~~i~~~~~--~e~~~~~~~~~~~~~~~~~~  216 (493)
                      +++.+. +..+                         ||+.|++.+++..+..+..++.  ||++++.+         + +
T Consensus       172 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---------~-~  241 (438)
T 3o7q_A          172 FGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH---------S-D  241 (438)
T ss_dssp             HTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC---------C-C
T ss_pred             HHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc---------c-c
Confidence            999998 5554                         9999988776665555444433  33322110         0 0


Q ss_pred             ccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHH
Q 011112          217 QVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRP  296 (493)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  296 (493)
                                 +     ++         +                              +.++   ..++.+|+|.++..
T Consensus       242 -----------~-----~~---------~------------------------------~~~~---~~~~~~~~~~~~~~  263 (438)
T 3o7q_A          242 -----------A-----KQ---------G------------------------------SFSA---SLSRLARIRHWRWA  263 (438)
T ss_dssp             -----------S-----ST---------T------------------------------SHHH---HHHHHTTCSHHHHH
T ss_pred             -----------c-----cc---------c------------------------------chhh---hHHHHHhChHHHHH
Confidence                       0     00         0                              1111   23456788887776


Q ss_pred             HHHHHHHHhcccCCCcceeee-eeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhh
Q 011112          297 MAWFFLAHVAVPNLSTVMFYY-QTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDI  375 (493)
Q Consensus       297 ~~~~~l~~~~~~~~~~~~~~~-~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~  375 (493)
                      .+..++............+.| .++.+|+++.+.+.......++.+++.++.+++.||+++|+.+..+.++..+..+. .
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~-~  342 (438)
T 3o7q_A          264 VLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI-S  342 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-H
Confidence            555444333332233334556 66778999999999988888899999999999999999999998888777665322 2


Q ss_pred             hheeccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          376 VLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       376 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      ...         +...... ...+..+..........++..+..|++ ++++.++.. .+.+|..++|.+.|.+.+..|
T Consensus       343 ~~~---------~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          343 AFA---------GGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG  409 (438)
T ss_dssp             HHC---------CHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHc---------CCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            111         1111111 112222233333333467778888876 888888877 778999999999999999887

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.95  E-value=5.6e-26  Score=237.42  Aligned_cols=428  Identities=14%  Similarity=0.077  Sum_probs=259.7

Q ss_pred             hhchhHHHHH----HHHHHHHhHHH-hHHHHHHHHHHhhhCC--------CHhhHHHHHHHHHhhHhh-hhhhhhccccc
Q 011112            7 VFGVSFLWLI----CLIYFTQGFRS-FVWTAVSYQLKDKLKF--------SPSASQFVSAVAFFPWSI-KPLYGILSDCI   72 (493)
Q Consensus         7 ~~~~~~~~~~----~~~~f~~g~~~-~~~~~~~~~l~~~~g~--------s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~   72 (493)
                      .++.++++.+    .+..|+.|++. .++.+++ .++++++.        +.++.|+..+.+.++..+ .+++|+++||+
T Consensus         4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~   82 (491)
T 4gc0_A            4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVE-SLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF   82 (491)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHH-HHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred             CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455555433    44557788874 6665544 44666632        234567888888899888 68899999995


Q ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHhhccc--------------chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhh
Q 011112           73 PIKGRKRIPYLVISTVLSLVPWLILGLNAF--------------FRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKS  138 (493)
Q Consensus        73 ~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~--------------~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~  138 (493)
                           +||+.++++.+++.++.+++++.+.              ...+++.+++.|+++|++.+...+....++.|..  
T Consensus        83 -----GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~--  155 (491)
T 4gc0_A           83 -----GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELA--  155 (491)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--
T ss_pred             -----cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--
Confidence                 7899999999999999888875321              1246788999999999999999999999999998  


Q ss_pred             hchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc--------cccHHHHHHHHHHHHHHHHHHhhccccccccchhhhccc
Q 011112          139 ERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT--------NIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFS  210 (493)
Q Consensus       139 ~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~--------~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~  210 (493)
                       |+++|++..+....+...|.++++.++..+..        ...||+.+.+..+..++..+..++.||++++...+.+..
T Consensus       156 -p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~  234 (491)
T 4gc0_A          156 -PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQE  234 (491)
T ss_dssp             -CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHH
T ss_pred             -CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchh
Confidence             56999999999999999999999988877654        245888887777666666667778999987763221100


Q ss_pred             ccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcc
Q 011112          211 SSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQ  290 (493)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  290 (493)
                      ..+  +.+               ++........+..      .               +.....+..++. .......+.
T Consensus       235 ~a~--~~l---------------~~~~~~~~~~~~~------~---------------~~~~~~~~~~~~-~~~~~~~~~  275 (491)
T 4gc0_A          235 QAE--GIL---------------RKIMGNTLATQAV------Q---------------EIKHSLDHGRKT-GGRLLMFGV  275 (491)
T ss_dssp             HHH--HHH---------------HHHHHHHHHHHHH------H---------------HHHHHHHHHHHH-TTHHHHSCC
T ss_pred             HHH--HhH---------------HHhcCCchhHHHH------H---------------HHHHHHHhhhhh-hhHHHHhcc
Confidence            000  000               0000000000000      0               000000000110 011122233


Q ss_pred             cchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 011112          291 PEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSIL  370 (493)
Q Consensus       291 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~  370 (493)
                      ++........++..............+..+..+.+............+..+++.++.+++.||.|+|+.+..+.....++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~  355 (491)
T 4gc0_A          276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIG  355 (491)
T ss_dssp             THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHH
Confidence            33332222222211111100000111222346777777766667777888888999999999999999998887777665


Q ss_pred             hhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHH-HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHh
Q 011112          371 SFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPF-LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGL  449 (493)
Q Consensus       371 ~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l  449 (493)
                      .+........      .......+....+........+.|. +.+.+|+.|++.|++++|+.++++++++.+++.+.+.+
T Consensus       356 ~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l  429 (491)
T 4gc0_A          356 MFSLGTAFYT------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM  429 (491)
T ss_dssp             HHHHHHHHHT------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHhc------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322111110      0111111111111122223334444 57899999999999999999999999999999888877


Q ss_pred             HHhhcCCCCCccchHHHHHHHHhhhhhhhhhh-hcccCCCCC
Q 011112          450 ASSLSISSGSFDNLLLGISIQALCTFIPIAFL-FLIPKGATG  490 (493)
Q Consensus       450 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~  490 (493)
                      .+..+....  .+....+.+.+++++++.+++ .++||++++
T Consensus       430 ~~~~~~~~~--~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          430 DKNSWLVAH--FHNGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             CHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence            653211100  011234455666666666665 689998875

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.94  E-value=2e-27  Score=239.78  Aligned_cols=348  Identities=16%  Similarity=0.128  Sum_probs=237.6

Q ss_pred             HHHHHHHHHhHHH-hHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHH
Q 011112           15 LICLIYFTQGFRS-FVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLV   92 (493)
Q Consensus        15 ~~~~~~f~~g~~~-~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~   92 (493)
                      .+....++.++.. ..... .+.+.+++|.|+++.|+..+++.++..+ +|++|+++||+     +||+.++.+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~   77 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPA-IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-----GRRPVILVGMSIFML   77 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-----CCCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhh-hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHH
Confidence            3455666777654 44444 4455788999999999999999999877 89999999995     566777788888888


Q ss_pred             HHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011112           93 PWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALTN  172 (493)
Q Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~~  172 (493)
                      +.+.+.+.+    +++.+++.|++.+++.+...+..++++.|..+   +++|++++++......+|..+|+.+++++.++
T Consensus        78 ~~~~~~~~~----~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  150 (375)
T 2gfp_A           78 ATLVAVTTS----SLTVLIAASAMQGMGTGVGGVMARTLPRDLYE---RTQLRHANSLLNMGILVSPLLAPLIGGLLDTM  150 (375)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHhc----cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            888777764    57788899999999999999999999999984   48999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHH-HhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhhhhhhhhh
Q 011112          173 IEIDRIFLLFTVLPAIQLL-SCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRKKNKKNQK  251 (493)
Q Consensus       173 ~gw~~~f~~~~~~~~l~~i-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (493)
                      .+||+.|++.+++.++..+ ..+++||+++++++         ++           +     +          +      
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-----------~-----~----------~------  189 (375)
T 2gfp_A          151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP---------RT-----------R-----L----------L------  189 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC---------CC-----------C-----T----------T------
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc---------cc-----------c-----H----------H------
Confidence            9999999988877665554 33456776543310         00           0     0          0      


Q ss_pred             hhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeeccCCCCHHHHHH
Q 011112          252 KRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEILNLEASFLGT  331 (493)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~s~~~~gl  331 (493)
                       .                      +.+       +.+|+|+++...+..++............+.|.++.+|+|+.+.|.
T Consensus       190 -~----------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~  239 (375)
T 2gfp_A          190 -T----------------------SYK-------TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSI  239 (375)
T ss_dssp             -T----------------------CST-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHH
T ss_pred             -H----------------------HHH-------HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence             0                      011       1123344444333333322222222333456666668889989999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHHHHHHhhHhHH
Q 011112          332 ARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVDAVNQFKFMPF  411 (493)
Q Consensus       332 ~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~  411 (493)
                      ......++.+++..+.+++.||.++ + +..+..+..+..+........ .    .++.+.......+..+..+......
T Consensus       240 ~~~~~~~~~~~~~~~~~~l~~r~~~-~-~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~l~g~~~~~~~~~~  312 (375)
T 2gfp_A          240 LFILPIPAAFFGAWFAGRPNKRFST-L-MWQSVICCLLAGLLMWIPDWF-G----VMNVWTLLVPAALFFFGAGMLFPLA  312 (375)
T ss_dssp             HHHTHHHHHHHHHHHHHTTTTHHHH-H-HHHHHHHHHHTSSSSSHHHHH-H----HHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHhhh-c----cccHHHHHHHHHHHHHHHHHhhHHH
Confidence            8888889999999999999998766 2 223322211111111111000 0    0011111111222223333334444


Q ss_pred             HHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          412 LILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       412 ~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                      .++..|..| +++|+++|+.+...++|..+++.+.|.+.+..+
T Consensus       313 ~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  354 (375)
T 2gfp_A          313 TSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ  354 (375)
T ss_dssp             HHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred             HHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            677888888 899999999999999999999999998887644

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.93  E-value=1.2e-24  Score=227.34  Aligned_cols=405  Identities=12%  Similarity=0.016  Sum_probs=234.5

Q ss_pred             hhHHHHHHHHHHHHhHHH-hHHHHHHHHHHhh-----hCCCHhhHHHHHHHHHhhHhh-hhhhhhcccc-cccCCCCchh
Q 011112           10 VSFLWLICLIYFTQGFRS-FVWTAVSYQLKDK-----LKFSPSASQFVSAVAFFPWSI-KPLYGILSDC-IPIKGRKRIP   81 (493)
Q Consensus        10 ~~~~~~~~~~~f~~g~~~-~~~~~~~~~l~~~-----~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr-~~~~g~~rr~   81 (493)
                      ++..+.+....+...+.. .....++++++++     +|.|..+.|+..+++.++..+ ++++|+++|| +     +||+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-----g~r~   86 (491)
T 4aps_A           12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-----GARP   86 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchH
Confidence            445555656666666543 4456667788877     999999999999999999887 7999999999 5     6888


Q ss_pred             HHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHH
Q 011112           82 YLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGIC  161 (493)
Q Consensus        82 ~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~l  161 (493)
                      .++.+.++..++.+++++.+    +.+.+++.|+++|++.+...+...+++.|..++ +.++|+.+.+++....++|..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~  161 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALPF----GASALFGSIILIIIGTGFLKPNVSTLVGTLYDE-HDRRRDAGFSIFVFGINLGAFI  161 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSCC----STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc-ccccceeeehHHHHHHHHHHHH
Confidence            89999999999888888765    466788999999999999999999999999864 2234888899999999999999


Q ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhcc-ccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhh
Q 011112          162 GSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLV-KENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIST  240 (493)
Q Consensus       162 g~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (493)
                      ||.+++++.++.|||+.|++.++..++..+..++. |+..++...+++     +            +..    +++    
T Consensus       162 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------------~~~----~~~----  216 (491)
T 4aps_A          162 APLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPT-----D------------PLA----PEE----  216 (491)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCS-----C------------CCS----HHH----
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCC-----C------------ccc----cch----
Confidence            99999999999999999999876655544433322 322211100000     0            000    000    


Q ss_pred             hhhhhhhhhh-----hhhhhhhhhccCCCCCCchhH------------HHHhhHHHHHHHHHHhhcccchHHHHHHHHHH
Q 011112          241 KKRKKNKKNQ-----KKRMFKIRKSQIPEKNNPLVI------------QWFHSLKAAIYSLYSAFRQPEILRPMAWFFLA  303 (493)
Q Consensus       241 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~  303 (493)
                      ..+..++...     ....+-.... +...+.....            .+....++......+..+....+...+..++.
T Consensus       217 ~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (491)
T 4aps_A          217 VKPLLVKVSLAVAGFIAIIVVMNLV-GWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLF  295 (491)
T ss_dssp             HHHHHHHCCCCCHHHHHHHHHHHHH-SSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhc-cCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            0000000000     0000000000 0000000000            00000000000000000111122222222222


Q ss_pred             HhcccCCCcceeeeeeccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH-----HHHHHHHHHhhhhhhhe
Q 011112          304 HVAVPNLSTVMFYYQTEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILL-----LTQVGLSILSFLDIVLV  378 (493)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~-----~~~~~~~~~~l~~~~~~  378 (493)
                      +..........+.|..+..+.+..+.+.......++.+++.++.+++.||.++|+...     .+.++..++.+.. ...
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~  374 (491)
T 4aps_A          296 WAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLM-AIP  374 (491)
T ss_dssp             HHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTT-HHH
T ss_pred             HHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH-HHH
Confidence            2222223333455656666776556666666677777788888899999998875443     4544444432221 111


Q ss_pred             eccccccCccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHH
Q 011112          379 SRMNLTVGISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLAS  451 (493)
Q Consensus       379 ~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~  451 (493)
                      ............+.......+..........+.++++.|..|++.||+++|+.+...++|..+++.+++.+.+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~  447 (491)
T 4aps_A          375 GALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA  447 (491)
T ss_dssp             HHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1000000000111111111222222233344457889999999999999999999999999999999887765

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.91  E-value=8.9e-25  Score=224.38  Aligned_cols=391  Identities=14%  Similarity=0.099  Sum_probs=221.6

Q ss_pred             hhhchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112            6 NVFGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus         6 ~~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      +.++.+..+.+...+++..+. +.....++.++++++|.|+.+.|...+.+.+...+ +|++|+++||+     +||+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-----Grr~~l   76 (417)
T 2cfq_A            2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYL   76 (417)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-----TTCCHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHH
Confidence            345566666565555554443 34455667788888999999999999999988887 89999999996     456666


Q ss_pred             HHHHHHHHHHH---HHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHH
Q 011112           84 VISTVLSLVPW---LILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGI  160 (493)
Q Consensus        84 i~~~~l~~~~~---~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~  160 (493)
                      +.+..+..+..   ..+.+.+.   ........+.+.+++.+.........+.+..++ .+++++...|......++|..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~g~~  152 (417)
T 2cfq_A           77 LWIITGMLVMFAPFFIFIFGPL---LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-VSRRSNFEFGRARMFGCVGWA  152 (417)
T ss_dssp             HHHHHHTTSCHHHHHHHTHHHH---HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH-HHHHHTCCHHHHSSSTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-hhhhcccchHHHHHHHHHHHH
Confidence            66655544321   11111110   000112334444443333332233333333332 125567777888778889999


Q ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhh
Q 011112          161 CGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNIST  240 (493)
Q Consensus       161 lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (493)
                      ++|.+++++.+ .+||+.|++.++..++..+..++.+|++++..+ +     ++++     +     +..   +      
T Consensus       153 ~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~-----~-----~~~---~------  206 (417)
T 2cfq_A          153 LGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPSSAT-V-----ANAV-----G-----ANH---S------  206 (417)
T ss_dssp             HHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSC-S-----SSSS-----S-----SCC---C------
T ss_pred             HHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcccccccc-c-----cccc-----c-----ccc---c------
Confidence            99999999987 489999988776544443444444433211100 0     0000     0     000   0      


Q ss_pred             hhhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeec
Q 011112          241 KKRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTE  320 (493)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  320 (493)
                          +       .                      +.+    +.++.+|+|+++...+..+.............+.|+.+
T Consensus       207 ----~-------~----------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (417)
T 2cfq_A          207 ----A-------F----------------------SLK----LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTS  249 (417)
T ss_dssp             ----C-------C----------------------CHH----HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----c-------c----------------------cHH----HHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0       0                      111    23345677776654433222111111111112334344


Q ss_pred             cCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehh
Q 011112          321 ILNL---EASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGS  397 (493)
Q Consensus       321 ~~g~---s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~  397 (493)
                      .++.   +....|+......++.+++.++.+++.||+++|+.+..+.++..+..+. ....         ++.+..+...
T Consensus       250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~  319 (417)
T 2cfq_A          250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG-SSFA---------TSALEVVILK  319 (417)
T ss_dssp             TSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-HTTC---------CSHHHHHHHT
T ss_pred             HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH-HHHh---------ccHHHHHHHH
Confidence            3332   2345566666777788888999999999999999888777666554221 1111         1111111111


Q ss_pred             HHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHH-HHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhh
Q 011112          398 ALVDAVNQFKFMPFLILSGQLCPPGIEGTLFAL-FMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFI  476 (493)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl-~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  476 (493)
                      .+..........+...+..|..|++.||+++++ +++..++|+.++|.++|.+.+.+|+        ...+.+.+++.++
T Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--------~~~f~~~~~~~l~  391 (417)
T 2cfq_A          320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--------QGAYLVLGLVALG  391 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--------HHHHHHHHHHHHH
Confidence            122222222233446789999999999999999 4788889999999999999887543        2234444555555


Q ss_pred             hhhhh-hcccC
Q 011112          477 PIAFL-FLIPK  486 (493)
Q Consensus       477 ~~~~~-~~l~~  486 (493)
                      +.+.. .+.||
T Consensus       392 ~~~~~~~~~~~  402 (417)
T 2cfq_A          392 FTLISVFTLSG  402 (417)
T ss_dssp             HHHHHTTSSCC
T ss_pred             HHHHHHhhhcC
Confidence            54433 34453

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.86  E-value=7.5e-21  Score=200.39  Aligned_cols=173  Identities=15%  Similarity=0.050  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhC------CCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112           12 FLWLICLIYFTQGFR-SFVWTAVSYQLKDKLK------FSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus        12 ~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g------~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      ..+.+....++..+. +.....+++++++++|      .|..+.|+..+++.++..+ .+++|+++||+    .+||+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----~g~r~~~   88 (524)
T 2xut_A           13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF----FGKYNTI   88 (524)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS----SCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcchHHH
Confidence            334455566665554 3455667778888899      9999999999999988877 78999999994    1678888


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHH---HHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSL---SWLAMAFGGI  160 (493)
Q Consensus        84 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~---~~~~~~~G~~  160 (493)
                      +.+.++..++.+++++.+   .+.+.+++.|++.|++.+...+...+++.|..+   +++|+++.+.   .....++|..
T Consensus        89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~g~~  162 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIFE---HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD---QSNKSLAQKAFDMFYFTINFGSF  162 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS---TTTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhccccchhHHHHHHHHcC---ccchHHHHHHHHHHHHHHHHHHH
Confidence            888888888888777764   146678899999999999999999999999885   4777665555   8899999999


Q ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhh
Q 011112          161 CGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSCG  194 (493)
Q Consensus       161 lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~  194 (493)
                      +|+.+++++.++.|||+.|++.+++.++..+..+
T Consensus       163 ~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          163 FASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999989999999988876555444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.32  E-value=4.1e-11  Score=122.77  Aligned_cols=181  Identities=14%  Similarity=0.085  Sum_probs=133.8

Q ss_pred             hchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++.+.++.+.+..++..+. .......+.++++++|.+..+.+...+...++..+ .+++|+++||+.   .+||+.+..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~---~~~~~~~~~  325 (451)
T 1pw4_A          249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF---RGNRGATGV  325 (451)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTCHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhHHH
Confidence            4556666566666665554 34556667787777999999999988888777766 789999999941   145666666


Q ss_pred             HHHHHH-HHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHH-HHHHHH
Q 011112           86 STVLSL-VPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAF-GGICGS  163 (493)
Q Consensus        86 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~-G~~lg~  163 (493)
                      +..+.. ++.+.+.+.++  .+.+...+..++.+++.+...+...+++.|..   |+++||++.|+......+ |..+++
T Consensus       326 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~g~~~~~  400 (451)
T 1pw4_A          326 FFMTLVTIATIVYWMNPA--GNPTVDMICMIVIGFLIYGPVMLIGLHALELA---PKKAAGTAAGFTGLFGYLGGSVAAS  400 (451)
T ss_dssp             HHHHHHHHHHHHTTSCCT--TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS---CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh---chhhhhhHHHHHHHHHHHHHHHHHH
Confidence            655554 55555555432  23445566667778877777777788888887   458899999999999999 999999


Q ss_pred             HHHHHhhccccHHHHHHHHHHHHHHHHHHhhcc
Q 011112          164 LLGGYALTNIEIDRIFLLFTVLPAIQLLSCGLV  196 (493)
Q Consensus       164 ~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~~~~  196 (493)
                      .+.|++.++.||+..|++.+++.++..+..++.
T Consensus       401 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          401 AIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998887766665544433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.11  E-value=1.6e-09  Score=110.53  Aligned_cols=167  Identities=10%  Similarity=-0.017  Sum_probs=120.5

Q ss_pred             hhchhHHHHHHHHHHHHhHH-HhHHHHHHHH-HHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112            7 VFGVSFLWLICLIYFTQGFR-SFVWTAVSYQ-LKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus         7 ~~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~-l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      .++.+.++...+..++.... .......+.+ +++.+|.+..+.+...++..+...+ .++.|+++||+     +||+.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~  328 (438)
T 3o7q_A          254 LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVL  328 (438)
T ss_dssp             HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHH
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHH
Confidence            45556666555555554443 3445666777 7887899999999988888777766 78999999995     577787


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGS  163 (493)
Q Consensus        84 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~  163 (493)
                      ..+.++..++.+.+.+.++    .+. .+..++.+++.+...+...++..|..+    ++++...++.. ...+|..++|
T Consensus       329 ~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~g~~~~~  398 (438)
T 3o7q_A          329 AAYALIAMALCLISAFAGG----HVG-LIALTLCSAFMSIQYPTIFSLGIKNLG----QDTKYGSSFIV-MTIIGGGIVT  398 (438)
T ss_dssp             HHHHHHHHHHHHHHHHCCH----HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCG----GGHHHHHHHHH-HTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC----cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc----ccccchhhHHH-HHHHHHHHHH
Confidence            7888777777776666542    222 333456677777777777777777664    33777777766 5679999999


Q ss_pred             HHHHHhhcccc-HHHHHHHHHHHHHH
Q 011112          164 LLGGYALTNIE-IDRIFLLFTVLPAI  188 (493)
Q Consensus       164 ~i~g~l~~~~g-w~~~f~~~~~~~~l  188 (493)
                      .+.|++.++.| ++..|++.+++.++
T Consensus       399 ~~~g~l~~~~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          399 PVMGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_dssp             HHHHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999999988 99998876654333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.10  E-value=1.5e-09  Score=110.77  Aligned_cols=158  Identities=11%  Similarity=0.055  Sum_probs=107.3

Q ss_pred             HHHHHHHHhhhCCC---HhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhh
Q 011112           31 TAVSYQLKDKLKFS---PSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSS  106 (493)
Q Consensus        31 ~~~~~~l~~~~g~s---~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~  106 (493)
                      ...+.++++.++.+   ..+.+...++..+...+ .++.|+++||+     +||+.++.+..+..++.+.+++.+    +
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~----~  311 (417)
T 2cfq_A          241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFAT----S  311 (417)
T ss_dssp             HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHTTCC----S
T ss_pred             HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhc----c
Confidence            33555666655422   33445555555444444 67899999996     566677777777766666655543    2


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHH-HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Q 011112          107 TWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSL-SWLAMAFGGICGSLLGGYALTNIEIDRIFLLFTVL  185 (493)
Q Consensus       107 ~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~-~~~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~  185 (493)
                      .+.+++..++.+++.+...+...+++.|..   |++.||...+. +.....+|..+||.++|++.++.|++..|.+.+++
T Consensus       312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~  388 (417)
T 2cfq_A          312 ALEVVILKTLHMFEVPFLLVGCFKYITSQF---EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV  388 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence            334455555556665555555667888877   45889999998 47788899999999999999988999999888877


Q ss_pred             HHHHHHHh-hcccccc
Q 011112          186 PAIQLLSC-GLVKENR  200 (493)
Q Consensus       186 ~~l~~i~~-~~~~e~~  200 (493)
                      .++..+.. ++.||++
T Consensus       389 ~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          389 ALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHTTSSCCSC
T ss_pred             HHHHHHHHHhhhcCCC
Confidence            66665543 3455543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.86  E-value=1.3e-08  Score=105.57  Aligned_cols=133  Identities=13%  Similarity=0.083  Sum_probs=99.0

Q ss_pred             ceeeeeecc-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChhHHHHHHHHHHHHHhhhhhhheeccccccC
Q 011112          313 VMFYYQTEI-----LNLEASFLGTARVVGWVGLMLGTYTYNGYLKR-LKLRRILLLTQVGLSILSFLDIVLVSRMNLTVG  386 (493)
Q Consensus       313 ~~~~~~~~~-----~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~-~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g  386 (493)
                      ..+.|..+.     +|+|..+.|++.....++..++.++.|++.|| +|+|+.+..+.++..++.+.. ...        
T Consensus        35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~-~~~--------  105 (491)
T 4aps_A           35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL-ALP--------  105 (491)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH-HSC--------
T ss_pred             HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-HHh--------
Confidence            344555555     89999999999888999999999999999999 899999999988877764332 111        


Q ss_pred             ccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCc--hHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcC
Q 011112          387 ISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGI--EGTLFALFMSISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       387 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                       ++....+....+.....+....+..+++.|..|+++  |++++++++...++|..++|.+++.+.+..|+
T Consensus       106 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~  175 (491)
T 4aps_A          106 -FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY  175 (491)
T ss_dssp             -CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             -hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence             122211112223333333344455788999999988  88899999999999999999999999987653

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.75  E-value=2.7e-08  Score=104.13  Aligned_cols=133  Identities=11%  Similarity=-0.030  Sum_probs=95.7

Q ss_pred             ceeeeeeccCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhhhhhhheecccccc
Q 011112          313 VMFYYQTEILN------LEASFLGTARVVGWVGLMLGTYTYNGYLKRL-KLRRILLLTQVGLSILSFLDIVLVSRMNLTV  385 (493)
Q Consensus       313 ~~~~~~~~~~g------~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~-~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~  385 (493)
                      ..+.|+.+++|      +|..+.|++.....++..++.++.|++.||+ |+|+.+..+.++..++.+... ...      
T Consensus        34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~------  106 (524)
T 2xut_A           34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA-IFE------  106 (524)
T ss_dssp             HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH-HTS------
T ss_pred             HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-Hhc------
Confidence            34556666788      9999999998888999999999999999999 999999988877776543321 110      


Q ss_pred             CccCceEeeehhHHHHHHHHhhHhHHHHHHhhcCCCCchHHHHHH---HHHHHhhhhhhhHhHHHHhHHhhc
Q 011112          386 GISDKTMVLYGSALVDAVNQFKFMPFLILSGQLCPPGIEGTLFAL---FMSISNFGSTVGSFFGAGLASSLS  454 (493)
Q Consensus       386 g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl---~~~~~~lg~~~~~~i~g~l~~~~g  454 (493)
                        .+.+..+....+.....+....+..+++.+..|+++|++..+.   .+...++|..+++.+++.+.+..|
T Consensus       107 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  176 (524)
T 2xut_A          107 --HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG  176 (524)
T ss_dssp             --SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred             --ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence              0112111122233333344445557889999999999765555   888999999999999998887654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.69  E-value=1e-08  Score=102.42  Aligned_cols=152  Identities=11%  Similarity=0.004  Sum_probs=107.0

Q ss_pred             eccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhH
Q 011112          319 TEILNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSA  398 (493)
Q Consensus       319 ~~~~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~  398 (493)
                      .+++|.|+.+.|+......++..++.++.|++.||+|+|+.+..+.++..++.+... ..         ++.+..+....
T Consensus        27 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~---------~~~~~l~~~~~   96 (375)
T 2gfp_A           27 ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TT---------SSLTVLIAASA   96 (375)
T ss_dssp             HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-Hh---------ccHHHHHHHHH
Confidence            456899999999998889999999999999999999999999988888777643322 11         11111111222


Q ss_pred             HHHHHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhhhhhHhHHHHhHHhhcCCCCCccchHHHHHHHHhhhhhhh
Q 011112          399 LVDAVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGSTVGSFFGAGLASSLSISSGSFDNLLLGISIQALCTFIPI  478 (493)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  478 (493)
                      +.............+++.|..|+++|++.+++.+...++|..+++.+++.+.+.+|+        ...+.+.+++.++..
T Consensus        97 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~  168 (375)
T 2gfp_A           97 MQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW--------RACYLFLLVLCAGVT  168 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH--------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH--------HHHHHHHHHHHHHHH
Confidence            333333333444567899999999999999999999999999999999998876543        234444444444443


Q ss_pred             h-hhhcccCCC
Q 011112          479 A-FLFLIPKGA  488 (493)
Q Consensus       479 ~-~~~~l~~~~  488 (493)
                      + ....+||.+
T Consensus       169 ~~~~~~~~~~~  179 (375)
T 2gfp_A          169 FSMARWMPETR  179 (375)
T ss_dssp             CCCCCSSCCCS
T ss_pred             HHHHHHCcccC
Confidence            3 334666543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.67  E-value=7.8e-07  Score=91.96  Aligned_cols=159  Identities=13%  Similarity=0.049  Sum_probs=101.1

Q ss_pred             HHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccc--hhhHHHHH
Q 011112           35 YQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFF--RSSTWHLI  111 (493)
Q Consensus        35 ~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~--~~~~~~l~  111 (493)
                      +.+.++.+.+.........+..+...+ .++.+.++||+     +||+.++.+.....++.+.++.....  ........
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-----Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  375 (491)
T 4gc0_A          301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-----GRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS  375 (491)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-----cCcchhccchHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            444556787777666554444444444 67889999996     57777777777666665555433211  11111122


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHHHHHhhc------cccHHHHHHHHHHH
Q 011112          112 VLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLLGGYALT------NIEIDRIFLLFTVL  185 (493)
Q Consensus       112 ~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i~g~l~~------~~gw~~~f~~~~~~  185 (493)
                      ...+..+++.+. .+....+.+|+.   |.+.|++..|+......+|..+++.+...+.+      ..++.+.|++.+++
T Consensus       376 ~~~~~~~~~~~~-~~~~~~~~~E~f---Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~  451 (491)
T 4gc0_A          376 MLFYVAAFAMSW-GPVCWVLLSEIF---PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM  451 (491)
T ss_dssp             HHHHHHHHHTTT-THHHHHHHHHSS---CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhHH-HHHHHHHHHHhC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            222223333332 244567888988   55899999999999999999888877665543      34556678887777


Q ss_pred             HHHHHHH-hhcccccccc
Q 011112          186 PAIQLLS-CGLVKENRVS  202 (493)
Q Consensus       186 ~~l~~i~-~~~~~e~~~~  202 (493)
                      .++..+. ++++||++..
T Consensus       452 ~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          452 GVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             HHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHHHheecCCCCC
Confidence            7776654 4679998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	493
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.96
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.93
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.19
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3e-29  Score=255.21  Aligned_cols=387  Identities=13%  Similarity=0.018  Sum_probs=253.4

Q ss_pred             hhhhchhHHHHHHHHHHHHhHHHhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHH
Q 011112            5 KNVFGVSFLWLICLIYFTQGFRSFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYL   83 (493)
Q Consensus         5 ~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~i   83 (493)
                      .|.++|..+..+.+.|+...++......+.|+++ |+|.|.+|+|+..+++.+++.+ ++++|+++||+     +||+.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-----g~r~~~   92 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFL   92 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CchHHH
Confidence            3445676666666666776665422234456766 5899999999999999999987 79999999995     688899


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHH
Q 011112           84 VISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGS  163 (493)
Q Consensus        84 i~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~  163 (493)
                      +.+.++..++.+++++.+...++++.+++.|++.+++.+...+...+++.|..+   +++|++++++...+..+|..+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~---~~~r~~~~~~~~~~~~~g~~i~~  169 (447)
T d1pw4a_          93 PAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS---QKERGGIVSVWNCAHNVGGGIPP  169 (447)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT---TTHHHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH---hhcccccccccccccchhhhhhh
Confidence            999999988888887765444466788999999999999998999999999884   58999999999999999999999


Q ss_pred             HHHHHhhcc-ccHHHHHHHHHHHHHHHHHHh-hccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhh
Q 011112          164 LLGGYALTN-IEIDRIFLLFTVLPAIQLLSC-GLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTK  241 (493)
Q Consensus       164 ~i~g~l~~~-~gw~~~f~~~~~~~~l~~i~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (493)
                      .+++.+.+. .+||+.|++.+++.++..+.. ++.+|++++.+...+    ++.+   +.+   .++..   ++      
T Consensus       170 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~---~~~~~---~~------  230 (447)
T d1pw4a_         170 LLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI----EEYK---NDY---PDDYN---EK------  230 (447)
T ss_dssp             HHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC----TTTC---CC--------------------
T ss_pred             hhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh----hhhh---hhc---ccchh---hc------
Confidence            999887664 479999998887777666544 445555543321100    0000   000   00000   00      


Q ss_pred             hhhhhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHHHhcccCCCcceeeeeecc
Q 011112          242 KRKKNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLAHVAVPNLSTVMFYYQTEI  321 (493)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  321 (493)
                      .+++       .                      +.++  ......+++|.++......++............+.|..+.
T Consensus       231 ~~~~-------~----------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (447)
T d1pw4a_         231 AEQE-------L----------------------TAKQ--IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV  279 (447)
T ss_dssp             ----------------------------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB
T ss_pred             cccc-------c----------------------chhh--HHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc
Confidence            0000       0                      0000  1233456777766655444433332222233345667777


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHH
Q 011112          322 LNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVD  401 (493)
Q Consensus       322 ~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~  401 (493)
                      .|++..+.+.......++.+++.++.+++.||.++++..........+...........     ...+.+.......+..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g  354 (447)
T d1pw4a_         280 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----PAGNPTVDMICMIVIG  354 (447)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----CTTCHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhc-----ccccHHHHHHHHHHHH
Confidence            89999999998888888899999999999999876654433333322221111111110     0111111111112222


Q ss_pred             HHHHhhHhHHHHHHhhcCCCCchHHHHHHHHHHHhhhh-hhhHhHHHHhHHhhcC
Q 011112          402 AVNQFKFMPFLILSGQLCPPGIEGTLFALFMSISNFGS-TVGSFFGAGLASSLSI  455 (493)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~~~~lg~-~~~~~i~g~l~~~~g~  455 (493)
                      +...........+..|..|++.+|+++|+.+.+.++++ ..++.+.|.+.|.+|+
T Consensus       355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~  409 (447)
T d1pw4a_         355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  409 (447)
T ss_dssp             HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            22222233345778999999999999999999998854 5678999999998764

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.2e-24  Score=216.50  Aligned_cols=368  Identities=14%  Similarity=0.072  Sum_probs=217.3

Q ss_pred             hchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHH
Q 011112            8 FGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVI   85 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~   85 (493)
                      ++.+..|.+...+|+..+. +.....++.++++++|.|++++|++.+++.++..+ +|++|+++||+     +||+.++.
T Consensus         4 lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-----grr~~l~~   78 (417)
T d1pv7a_           4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLW   78 (417)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----TTCTHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CchHHHHH
Confidence            4556677677777777775 46666667788888999999999999999999887 89999999996     56667777


Q ss_pred             HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHHHHHHHHHH
Q 011112           86 STVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAFGGICGSLL  165 (493)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~G~~lg~~i  165 (493)
                      +.....++...+...+.........++.+.+.+.+.+...........+...+ +.+++.+..+........+..+++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (417)
T d1pv7a_          79 IITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-VSRRSNFEFGRARMFGCVGWALGASI  157 (417)
T ss_dssp             HHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH-HHHHHSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccc-hhhhhHHHHHHHhhhhcccccccccc
Confidence            77776666666665543221222233444444444333333333333333332 23556667788888889999999999


Q ss_pred             HHHhhccccHHHHHHHHHHHHHHHHH-HhhccccccccchhhhcccccCCCcccCCCCcccCCCCCccccchhhhhhhhh
Q 011112          166 GGYALTNIEIDRIFLLFTVLPAIQLL-SCGLVKENRVSTKVLKEFSSSNGYHQVNGNESILDDEDGFSEEKYNISTKKRK  244 (493)
Q Consensus       166 ~g~l~~~~gw~~~f~~~~~~~~l~~i-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (493)
                      ++.+.+. +|+..+........+..+ ..+..+|+++..+.+++..   +             +.    ++         
T Consensus       158 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------~~----~~---------  207 (417)
T d1pv7a_         158 VGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG---A-------------NH----SA---------  207 (417)
T ss_dssp             HHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH---S-------------CC----CC---------
T ss_pred             ccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh---h-------------hc----cc---------
Confidence            9999876 455555555544444443 3445565544332110000   0             00    00         


Q ss_pred             hhhhhhhhhhhhhhhccCCCCCCchhHHHHhhHHHHHHHHHHhhcccchHHHHHHHHHH---HhcccCCCcceeeeeecc
Q 011112          245 KNKKNQKKRMFKIRKSQIPEKNNPLVIQWFHSLKAAIYSLYSAFRQPEILRPMAWFFLA---HVAVPNLSTVMFYYQTEI  321 (493)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~  321 (493)
                      .                              ..+    ...+..+++..+......+..   .............+..+.
T Consensus       208 ~------------------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (417)
T d1pv7a_         208 F------------------------------SLK----LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFAT  253 (417)
T ss_dssp             C------------------------------CHH----HHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred             c------------------------------ccc----ccccccccccccchhhhhHHHHHHHHhhhccccccccccccc
Confidence            0                              000    011112222222111111110   000000000001111122


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhhhhhheeccccccCccCceEeeehhHHHH
Q 011112          322 LNLEASFLGTARVVGWVGLMLGTYTYNGYLKRLKLRRILLLTQVGLSILSFLDIVLVSRMNLTVGISDKTMVLYGSALVD  401 (493)
Q Consensus       322 ~g~s~~~~gl~~~~~~~~~~l~~~~~~~~~~~~~~r~~l~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~~~~~  401 (493)
                      .+.+....+.......++..++..+.+++.||.++++.+..+.++..+..+. ....         ++.+.......+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~l~g  323 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG-SSFA---------TSALEVVILKTLHM  323 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHH-HHTC---------CCHHHHHHHHHHHH
T ss_pred             cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhc-cccc---------cccchhhHHHHHHH
Confidence            3334445566677778888889999999999999999999888877665332 1111         22222222223333


Q ss_pred             HHHHhhHhHHHHHHhhcCCCCchHHHHHHHHH-HHhhhhhhhHhHHHHhHHhhcC
Q 011112          402 AVNQFKFMPFLILSGQLCPPGIEGTLFALFMS-ISNFGSTVGSFFGAGLASSLSI  455 (493)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~p~~~~gt~~gl~~~-~~~lg~~~~~~i~g~l~~~~g~  455 (493)
                      ...+....+..+++.|.+|++.||+.+++... ...+|..++|.++|.+.|.+|+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~  378 (417)
T d1pv7a_         324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF  378 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence            33344455567889999999999999998654 5568999999999999998875

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=3.3e-10  Score=112.92  Aligned_cols=178  Identities=15%  Similarity=0.097  Sum_probs=119.9

Q ss_pred             hchhHHHHHHHHHHHHhHH-HhHHHHHHHHHHhhhCCCHhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchh-HHH
Q 011112            8 FGVSFLWLICLIYFTQGFR-SFVWTAVSYQLKDKLKFSPSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIP-YLV   84 (493)
Q Consensus         8 ~~~~~~~~~~~~~f~~g~~-~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~-~ii   84 (493)
                      ++.+..+.+....++.... .......+.++++++|.+..+.+...++..+...+ .++.|+++||..   ++++. ...
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~  322 (447)
T d1pw4a_         246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF---RGNRGATGV  322 (447)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTCHHHHHH
T ss_pred             HcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcc---ccccccccc
Confidence            4556666555555554443 34455567788888999999999888887776666 688999999962   12221 222


Q ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhchhcchhHHHHHHHHHHH-HHHHHH
Q 011112           85 ISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAMADVVVDAMIAEAAKSERAAFAGDLQSLSWLAMAF-GGICGS  163 (493)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ali~~~~~~~~~~~rg~~~g~~~~~~~~-G~~lg~  163 (493)
                      ....+..++........  ..+.+...++.++.+++.+...+....+..|..   |+++||++.|+.+...++ |.++++
T Consensus       323 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~~g~~~~~  397 (447)
T d1pw4a_         323 FFMTLVTIATIVYWMNP--AGNPTVDMICMIVIGFLIYGPVMLIGLHALELA---PKKAAGTAAGFTGLFGYLGGSVAAS  397 (447)
T ss_dssp             HHHHHHHHHHHHTTSCC--TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS---CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222222222222  234455566666777777777777788888887   458899999999887776 567799


Q ss_pred             HHHHHhhccccHHHHHHHHHHHHHHHHHHh
Q 011112          164 LLGGYALTNIEIDRIFLLFTVLPAIQLLSC  193 (493)
Q Consensus       164 ~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~  193 (493)
                      .+.|++.++.||+..|++.++..++..+..
T Consensus       398 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         398 AIVGYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988776666555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=6e-10  Score=108.68  Aligned_cols=144  Identities=12%  Similarity=0.086  Sum_probs=109.5

Q ss_pred             HhhHHHHHHHHHhhHhh-hhhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhhhh
Q 011112           45 PSASQFVSAVAFFPWSI-KPLYGILSDCIPIKGRKRIPYLVISTVLSLVPWLILGLNAFFRSSTWHLIVLLTAQNLGSAM  123 (493)
Q Consensus        45 ~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~rr~~ii~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~  123 (493)
                      ....+...+...+...+ .++.+++.||.     +||+.+..+..+..++.+.+.+.+    +.+..++..++.+++.+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~g~~~~~  328 (417)
T d1pv7a_         258 TRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFAT----SALEVVILKTLHMFEVPF  328 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHTCC----CHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccchhhhhhhhccc-----ccccchhhhHHHHHHhhhcccccc----ccchhhHHHHHHHHHHHH
Confidence            33444444444444444 67899999995     677788888888888877777765    455667777788899888


Q ss_pred             HHHHHHHHHHHHhhhhchhcchhHHHHHH-HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHh-hcccccc
Q 011112          124 ADVVVDAMIAEAAKSERAAFAGDLQSLSW-LAMAFGGICGSLLGGYALTNIEIDRIFLLFTVLPAIQLLSC-GLVKENR  200 (493)
Q Consensus       124 ~~~~~~ali~~~~~~~~~~~rg~~~g~~~-~~~~~G~~lg~~i~g~l~~~~gw~~~f~~~~~~~~l~~i~~-~~~~e~~  200 (493)
                      ..+...+++.|..   |+++|+++.|... ....+|..+++.++|++.|+.||++.|++.+++.++..+.. +.+++++
T Consensus       329 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (417)
T d1pv7a_         329 LLVGCFKYITSQF---EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHHHHHHHHS---CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            8889999999988   4589999999754 56779999999999999999999999999887776666544 4455444