Citrus Sinensis ID: 011114

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
MFGRVYYLRRLHFLNCSIILGIKRKRKMRMRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPSRWSG
ccccEEEEEEccccccEEEEccccccccccccccccccEEEccccccccEEEHHHHHHHHHHHHHHHHHEEccccccccEEEEEccccccHHHHHHccccEEccccccccccHHHHcccccccEEEEEEEccccccEEEcccccccccccccccccccEEEEcccEEEccccccEEEccccEEEEccccEEEEEEEEccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEccEEEEEccccEEEEEEEEEcccccccEEEEEEEcccccccEEcccccccccccccccEEEcccccEEEEEEEccccEEEEEEcccccccccccEEEEccccEEEEEEEEEEccEEEEEEEcccccccccEEEEEEcccccccEEcccccccccccccccccccEEEEEEEccccccEEEEEEEEccccccccccEEEEEEEEcccccccccccccccccccEEEEEEEEccccccccc
cccHHHHHHHHHHHHHHHHHcHHHHHccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHcccccccccccccHHHHccccccccHHHHHHcccHHHHHEEcccccccccccccccccccEEccccEEEcccccEEEEcccEEEEEccccEEEEEEEEcccccccccccccccccEEEEEEEEccccccEcHcccEEcccccccccccccccEEEccEEEEEcccccEEEEEEEccccccccEEEEEEcccccccEEEEcccccccccccccEEEEcccccEEEEEEccccccEEEEEcccccccccccEEEEcccccccccEEEEEccEEEEEEcccccccccccEEEEccccccccHccccccccccccccccEEccccEEEEEccccccEEEEEEccccccccccccEEEEEEEEccccccccccccccccccEEEEEEEccccccccccc
MFGRVYYLRRLHFLNCSIILGIKRKRKMRMrnkykkpttfpcnagskcsVSIILWILAGFLLLLHFFSlvshkdgtsgeielhishnpsfrelveveeeniqippprgkrspraakrrpkrTTTLIDEFLdensqlrhvffpdmktaidpmkdngndsfyyypgriwldtegapiqahgggilydersrtyfwygeykdgptyhahkkAAARVDIIGVgcysskdmwtWKNEGIVLAAEetnethdlyklnvlerpkviyndrtgkYVMWMHIDDCNYTKAAVGVaisdyptgpfdylyskrphgfdsrdmtifkdddgVAYLVYSsednselhigpltsdyldvsNVVRRILVGQHREAPALFKHLGTYYMVTsgctgwapneALVHAAEsimgpwedmgnpciggnkvfRLTTFFAQstyviplaglpglyifmadrwnpadlresryiwlplivrgpadrpleynfgfplwsrvsiywhkkwrlpsrwsg
mfgrvyylrrlhflncsiilgikrkrkmRMRNKykkpttfpcnagskCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHNPSFRELVEVeeeniqippprgkrspraakrrpkrtttlidefldensqlrhVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAeetnethdlyklnvlerpkviyNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADRPLEYNFGFPLwsrvsiywhkkwrlpsrwsg
MFGRVYYLRRLHFLNCSIILGIkrkrkmrmrnkykkPTTFPCNAGSKCSVSiilwilagfllllhffslVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIppprgkrspraakrrpkrTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPSRWSG
**GRVYYLRRLHFLNCSIILGIKRKRKMRMRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHI****************************************LIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRL******
**GRVYYLRRLHFLNCSIIL******************TFPCNAGSKCSVSIILWILAGFLLLLHFFSLVS*****************************************************LIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLP**W**
MFGRVYYLRRLHFLNCSIILGIKRKRKMRMRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQ******************RTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPSRWSG
MFGRVYYLRRLHFLNCSIILGIKRKRKMRMRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIPPPR**************TTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPS****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFGRVYYLRRLHFLNCSIILGIKRKRKMRMRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLLLHFFSLVSHKDGTSGEIELHISHNPSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRTTTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPSRWSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query493
359480611492 PREDICTED: uncharacterized protein LOC10 0.983 0.985 0.797 0.0
255568607499 beta-glucanase, putative [Ricinus commun 0.961 0.949 0.827 0.0
296087306434 unnamed protein product [Vitis vinifera] 0.872 0.990 0.784 0.0
449525981478 PREDICTED: uncharacterized LOC101203100 0.955 0.985 0.771 0.0
449460584478 PREDICTED: uncharacterized protein LOC10 0.955 0.985 0.769 0.0
356496991465 PREDICTED: uncharacterized protein LOC10 0.910 0.965 0.783 0.0
356541615465 PREDICTED: uncharacterized protein LOC10 0.910 0.965 0.786 0.0
357482577472 hypothetical protein MTR_5g015460 [Medic 0.943 0.985 0.766 0.0
297816238465 glycosyl hydrolase family protein 43 [Ar 0.920 0.976 0.720 0.0
359806330465 uncharacterized protein LOC100813539 [Gl 0.906 0.961 0.741 0.0
>gi|359480611|ref|XP_003632499.1| PREDICTED: uncharacterized protein LOC100854050 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/489 (79%), Positives = 437/489 (89%), Gaps = 4/489 (0%)

Query: 4   RVYYLRRLHFLNCSIILGIKRKRKMRMRNKYKKPTTFPCNAGSKCSVSIILWILAGFLLL 63
           R+   +R  F  C   LG K + KMRMRNKY+KPTTF CNAGS+CS+S+++W L GFLL+
Sbjct: 3   RLMSGKRFRFWLC---LGDKLEEKMRMRNKYRKPTTFRCNAGSRCSLSVMVWSLVGFLLM 59

Query: 64  LHFFSLVSHKDGTSGEIELHISHN-PSFRELVEVEEENIQIPPPRGKRSPRAAKRRPKRT 122
           +HF+SL  HKDG  G  +L +SH+ P  REL +VEEENIQIPPP+GKRSPRAAKRRPKR 
Sbjct: 60  IHFYSLSRHKDGAGGHSQLQMSHHHPLLRELEQVEEENIQIPPPKGKRSPRAAKRRPKRP 119

Query: 123 TTLIDEFLDENSQLRHVFFPDMKTAIDPMKDNGNDSFYYYPGRIWLDTEGAPIQAHGGGI 182
           TTLIDEFLDE+SQ+RH+FFPD KTAIDPM++ GNDSF YYPGRIWLDT+G PIQAHGGGI
Sbjct: 120 TTLIDEFLDESSQIRHLFFPDQKTAIDPMQEAGNDSFCYYPGRIWLDTDGNPIQAHGGGI 179

Query: 183 LYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETN 242
           LYD+RSR Y+WYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKD+WTWK EGIVLAAEET+
Sbjct: 180 LYDKRSRMYYWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDLWTWKFEGIVLAAEETD 239

Query: 243 ETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKR 302
           E HDL+K NVLERPKVIYNDRTGKYVMWMH+DD NYTKAAVGVA+SD PTGPFDYLYSKR
Sbjct: 240 EAHDLHKSNVLERPKVIYNDRTGKYVMWMHVDDTNYTKAAVGVAMSDSPTGPFDYLYSKR 299

Query: 303 PHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPA 362
           PHGFDSRDMT+F+D+DGVAYL+YSSEDNSELHIGPL  DYLDV++V+RRILVGQHREAPA
Sbjct: 300 PHGFDSRDMTLFRDEDGVAYLIYSSEDNSELHIGPLNQDYLDVTHVMRRILVGQHREAPA 359

Query: 363 LFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTY 422
           LFKH GTYYM+TSGCTGWAPNEAL HAAESIMGPWE MGNPCIGGNK+FRLTTFFAQST+
Sbjct: 360 LFKHQGTYYMITSGCTGWAPNEALAHAAESIMGPWETMGNPCIGGNKIFRLTTFFAQSTF 419

Query: 423 VIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWH 482
           V+PL G+ G +IFMADRWNPADLR+SRY+WLPL V G AD PLEYNFGFPLWSRVSIYWH
Sbjct: 420 VVPLPGITGSFIFMADRWNPADLRDSRYVWLPLTVGGAADHPLEYNFGFPLWSRVSIYWH 479

Query: 483 KKWRLPSRW 491
           ++WRLP  W
Sbjct: 480 RRWRLPYGW 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568607|ref|XP_002525277.1| beta-glucanase, putative [Ricinus communis] gi|223535435|gb|EEF37105.1| beta-glucanase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296087306|emb|CBI33680.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449525981|ref|XP_004169994.1| PREDICTED: uncharacterized LOC101203100 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449460584|ref|XP_004148025.1| PREDICTED: uncharacterized protein LOC101203100 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356496991|ref|XP_003517348.1| PREDICTED: uncharacterized protein LOC100775557 [Glycine max] Back     alignment and taxonomy information
>gi|356541615|ref|XP_003539269.1| PREDICTED: uncharacterized protein LOC100782607 [Glycine max] Back     alignment and taxonomy information
>gi|357482577|ref|XP_003611575.1| hypothetical protein MTR_5g015460 [Medicago truncatula] gi|355512910|gb|AES94533.1| hypothetical protein MTR_5g015460 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297816238|ref|XP_002876002.1| glycosyl hydrolase family protein 43 [Arabidopsis lyrata subsp. lyrata] gi|297321840|gb|EFH52261.1| glycosyl hydrolase family protein 43 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359806330|ref|NP_001241482.1| uncharacterized protein LOC100813539 [Glycine max] gi|255638374|gb|ACU19498.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query493
TAIR|locus:2097370466 AT3G49880 [Arabidopsis thalian 0.817 0.864 0.755 1.3e-178
TAIR|locus:2158646471 AT5G67540 [Arabidopsis thalian 0.841 0.881 0.721 1.6e-175
UNIPROTKB|G4NHG9 458 MGG_03844 "Glycosyl hydrolase 0.565 0.609 0.415 3.5e-52
ASPGD|ASPL0000037341 488 AN2664 [Emericella nidulans (t 0.559 0.565 0.316 8.3e-35
UNIPROTKB|G4MZC8 487 MGG_11400 "Endo-1,4-beta-xylan 0.387 0.392 0.281 1.2e-08
UNIPROTKB|G4NAP1 456 MGG_08496 "Endo-1,4-beta-xylan 0.344 0.372 0.292 0.00045
ASPGD|ASPL0000064441383 AN10919 [Emericella nidulans ( 0.332 0.428 0.273 0.00072
TAIR|locus:2097370 AT3G49880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1734 (615.5 bits), Expect = 1.3e-178, P = 1.3e-178
 Identities = 306/405 (75%), Positives = 350/405 (86%)

Query:    86 HNPSFRELVEVEEENIQIXXXXXXXXXXXXXXXXXXTTTLIDEFLDENSQLRHVFFPDMK 145
             H+P  REL  VEEENI +                   TTL++EFLDENSQ+RH+FFPDMK
Sbjct:    56 HHPIVRELERVEEENIHMPPPRKRSPRAIKRKPKT-PTTLVEEFLDENSQIRHLFFPDMK 114

Query:   146 TAIDPMKDNGND-SFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYH 204
             +A  P K++ ND S YY+PGRIW DTEG PIQAHGGGIL+D+ S+ Y+WYGEYKDGPTY 
Sbjct:   115 SAFGPTKEDTNDTSHYYFPGRIWTDTEGNPIQAHGGGILFDDISKVYYWYGEYKDGPTYL 174

Query:   205 AHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRT 264
             +HKK AARVDIIGVGCYSSKD+WTWKNEG+VLAAEET+ETHDL+K NVLERPKVIYN  T
Sbjct:   175 SHKKGAARVDIIGVGCYSSKDLWTWKNEGVVLAAEETDETHDLHKSNVLERPKVIYNSDT 234

Query:   265 GKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLV 324
             GKYVMWMHIDD NYTKA+VGVAISD PTGPFDYLYS+ PHGFDSRDMT++KDDD VAYL+
Sbjct:   235 GKYVMWMHIDDANYTKASVGVAISDNPTGPFDYLYSRSPHGFDSRDMTVYKDDDNVAYLI 294

Query:   325 YSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNE 384
             YSSEDNS LHIGPLT +YLDV  V++RI+VGQHREAPA+FKH  TYYM+TSGCTGWAPNE
Sbjct:   295 YSSEDNSVLHIGPLTENYLDVKPVMKRIMVGQHREAPAIFKHQNTYYMITSGCTGWAPNE 354

Query:   385 ALVHAAESIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGLYIFMADRWNPAD 444
             AL HAAESIMGPWE +GNPC+GGN +FR TTFFAQST+VIPL G+PG++IFMADRWNPAD
Sbjct:   355 ALAHAAESIMGPWETLGNPCVGGNSIFRSTTFFAQSTFVIPLPGVPGVFIFMADRWNPAD 414

Query:   445 LRESRYIWLPLIVRGPADRPLEYNFGFPLWSRVSIYWHKKWRLPS 489
             LR+SRY+WLPLIV GPADRPLEY+FGFP+WSRVS+YWH++WRLPS
Sbjct:   415 LRDSRYLWLPLIVGGPADRPLEYSFGFPMWSRVSVYWHRQWRLPS 459
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
TAIR|locus:2158646 AT5G67540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4NHG9 MGG_03844 "Glycosyl hydrolase family 43 protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000037341 AN2664 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4MZC8 MGG_11400 "Endo-1,4-beta-xylanase D" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|G4NAP1 MGG_08496 "Endo-1,4-beta-xylanase D" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000064441 AN10919 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
cd08985265 cd08985, GH43_6, Glycosyl hydrolase family 43 1e-129
cd08978271 cd08978, GH_F, Glycosyl hydrolase families 43 and 7e-49
cd09004275 cd09004, GH43_bXyl, Glycosyl hydrolase family 43, 2e-19
cd08990274 cd08990, GH43_AXH_like, Glycosyl hydrolase family 6e-19
cd08999287 cd08999, GH43_ABN_2, Glycosyl hydrolase family 43 4e-16
cd08991294 cd08991, GH43_bXyl_2, Glycosyl hydrolase family 43 2e-14
pfam04616284 pfam04616, Glyco_hydro_43, Glycosyl hydrolases fam 9e-14
cd08772286 cd08772, GH43_62_32_68, Glycosyl hydrolase familie 5e-12
cd08986269 cd08986, GH43_7, Glycosyl hydrolase family 43 4e-07
cd08981291 cd08981, GH43_2, Glycosyl hydrolase family 43 6e-07
cd09001269 cd09001, GH43_XYL_2, Glycosyl hydrolase family 43, 7e-07
cd09003311 cd09003, GH43_AXH_1, Glycosyl hydrolase family 43 1e-06
COG3507 549 COG3507, XynB, Beta-xylosidase [Carbohydrate trans 2e-06
cd08998288 cd08998, GH43_ABN_1, Glycosyl hydrolase family 43 3e-06
cd08979276 cd08979, GH_J, Glycosyl hydrolase families 32 and 3e-04
cd09000288 cd09000, GH43_XYL_1, Glycosyl hydrolase family 43, 3e-04
>gnl|CDD|185726 cd08985, GH43_6, Glycosyl hydrolase family 43 Back     alignment and domain information 
 Score =  374 bits (963), Expect = e-129
 Identities = 151/282 (53%), Positives = 186/282 (65%), Gaps = 20/282 (7%)

Query: 175 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGI 234
           IQAHGGGIL      TY+WYGE K G                GV CYSS D+  W  EG+
Sbjct: 1   IQAHGGGILKVGG--TYYWYGENKGG----------GDTAFGGVSCYSSTDLVNWTFEGL 48

Query: 235 VLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGP 294
            L  EE  ++ DL    ++ERPKVIYN +TGKYVMWMHID  +Y+ A VGVA SD PTGP
Sbjct: 49  ALTPEE--DSADLGPGRIIERPKVIYNAKTGKYVMWMHIDSSDYSDARVGVATSDTPTGP 106

Query: 295 FDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILV 354
           + YL S RP G+ SRD  +F DDDG AYL+YS  DNS+L+I  LT DYL V+  V  + V
Sbjct: 107 YTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDRDNSDLYIYRLTDDYLSVTGEVTTVFV 166

Query: 355 GQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLT 414
           G  REAPA+FK  G YY++TSG TGW PN+A    A SI+GPW D+GNP  GG+     T
Sbjct: 167 GAGREAPAIFKRNGKYYLLTSGLTGWNPNDARYATATSILGPWTDLGNPGPGGS-----T 221

Query: 415 TFFAQSTYVIPLAGL-PGLYIFMADRWNPADLRESRYIWLPL 455
           T+ +Q+T+V+P+ G     YI+M DRWNP+DL +SRY+WLPL
Sbjct: 222 TYGSQTTFVLPVPGSKQTTYIYMGDRWNPSDLGDSRYVWLPL 263

This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. Length = 265
>gnl|CDD|185719 cd08978, GH_F, Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F Back     alignment and domain information
>gnl|CDD|185745 cd09004, GH43_bXyl, Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases Back     alignment and domain information
>gnl|CDD|185731 cd08990, GH43_AXH_like, Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase Back     alignment and domain information
>gnl|CDD|185740 cd08999, GH43_ABN_2, Glycosyl hydrolase family 43 Back     alignment and domain information
>gnl|CDD|185732 cd08991, GH43_bXyl_2, Glycosyl hydrolase family 43 Back     alignment and domain information
>gnl|CDD|218178 pfam04616, Glyco_hydro_43, Glycosyl hydrolases family 43 Back     alignment and domain information
>gnl|CDD|185718 cd08772, GH43_62_32_68, Glycosyl hydrolase families: GH43, GH62, GH32, GH68 Back     alignment and domain information
>gnl|CDD|185727 cd08986, GH43_7, Glycosyl hydrolase family 43 Back     alignment and domain information
>gnl|CDD|185722 cd08981, GH43_2, Glycosyl hydrolase family 43 Back     alignment and domain information
>gnl|CDD|185742 cd09001, GH43_XYL_2, Glycosyl hydrolase family 43, beta-D-xylosidase Back     alignment and domain information
>gnl|CDD|185744 cd09003, GH43_AXH_1, Glycosyl hydrolase family 43 Back     alignment and domain information
>gnl|CDD|226038 COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185739 cd08998, GH43_ABN_1, Glycosyl hydrolase family 43 Back     alignment and domain information
>gnl|CDD|185720 cd08979, GH_J, Glycosyl hydrolase families 32 and 68, which for the clan GH-J Back     alignment and domain information
>gnl|CDD|185741 cd09000, GH43_XYL_1, Glycosyl hydrolase family 43, beta-D-xylosidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 493
cd08985265 GH43_6 Glycosyl hydrolase family 43. This glycosyl 100.0
cd09003311 GH43_AXH_1 Glycosyl hydrolase family 43. This glyc 100.0
cd08988279 GH43_ABN Glycosyl hydrolase family 43. This glycos 100.0
cd09004275 GH43_bXyl Glycosyl hydrolase family 43, includes m 100.0
cd08981291 GH43_2 Glycosyl hydrolase family 43. This glycosyl 100.0
cd08990274 GH43_AXH_like Glycosyl hydrolase family 43, includ 100.0
cd08989269 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylo 100.0
cd09000288 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xy 100.0
PF04616286 Glyco_hydro_43: Glycosyl hydrolases family 43; Int 100.0
cd09002280 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xy 100.0
cd09001269 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xy 100.0
cd08991294 GH43_bXyl_2 Glycosyl hydrolase family 43. This gly 100.0
cd08999287 GH43_ABN_2 Glycosyl hydrolase family 43. This glyc 100.0
cd08998288 GH43_ABN_1 Glycosyl hydrolase family 43. This glyc 100.0
cd08986269 GH43_7 Glycosyl hydrolase family 43. This glycosyl 100.0
cd08978271 GH_F Glycosyl hydrolase families 43 and 62 form CA 100.0
cd08982295 GH43_3 Glycosyl hydrolase family 43. This glycosyl 100.0
cd08980288 GH43_1 Glycosyl hydrolase family 43. This glycosyl 100.0
cd08772286 GH43_62_32_68 Glycosyl hydrolase families: GH43, G 99.97
cd08984294 GH43_5 Glycosyl hydrolase family 43. This glycosyl 99.97
COG3507 549 XynB Beta-xylosidase [Carbohydrate transport and m 99.95
cd08983276 GH43_4 Glycosyl hydrolase family 43. This glycosyl 99.93
cd08987303 GH62 Glycosyl hydrolase family 62, characterized a 99.92
cd08995280 GH32_Aec43_like Glycosyl hydrolase family 32. This 99.88
cd08997349 GH68 Glycosyl hydrolase family 68, includes levans 99.87
cd08992349 GH43_like_1 Glycosyl hydrolase family 43, uncharac 99.85
cd08994291 GH43_like_2 Glycosyl hydrolase 43-like family cons 99.83
COG3940324 Predicted beta-xylosidase [General function predic 99.79
cd08979276 GH_J Glycosyl hydrolase families 32 and 68, which 99.74
cd08996298 GH32_B_Fructosidase Glycosyl hydrolase family 32, 99.72
cd08993268 GH43_DUF377 Glycosyl hydrolase family 43 containin 99.6
cd08994291 GH43_like_2 Glycosyl hydrolase 43-like family cons 99.59
cd08990274 GH43_AXH_like Glycosyl hydrolase family 43, includ 99.59
cd08999287 GH43_ABN_2 Glycosyl hydrolase family 43. This glyc 99.58
TIGR01322 445 scrB_fam sucrose-6-phosphate hydrolase. 99.53
smart00640 437 Glyco_32 Glycosyl hydrolases family 32. 99.53
PF02435428 Glyco_hydro_68: Levansucrase/Invertase; InterPro: 99.51
cd08986269 GH43_7 Glycosyl hydrolase family 43. This glycosyl 99.5
cd09004275 GH43_bXyl Glycosyl hydrolase family 43, includes m 99.49
cd08772286 GH43_62_32_68 Glycosyl hydrolase families: GH43, G 99.45
PF00251308 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-t 99.45
cd08988279 GH43_ABN Glycosyl hydrolase family 43. This glycos 99.41
cd08995280 GH32_Aec43_like Glycosyl hydrolase family 32. This 99.4
cd08991294 GH43_bXyl_2 Glycosyl hydrolase family 43. This gly 99.39
cd08981291 GH43_2 Glycosyl hydrolase family 43. This glycosyl 99.39
cd09003311 GH43_AXH_1 Glycosyl hydrolase family 43. This glyc 99.36
cd08998288 GH43_ABN_1 Glycosyl hydrolase family 43. This glyc 99.35
cd09002280 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xy 99.34
cd09000288 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xy 99.33
PF04616286 Glyco_hydro_43: Glycosyl hydrolases family 43; Int 99.32
cd08989269 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylo 99.31
cd08978271 GH_F Glycosyl hydrolase families 43 and 62 form CA 99.31
cd09001269 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xy 99.29
cd08982295 GH43_3 Glycosyl hydrolase family 43. This glycosyl 99.25
cd08985265 GH43_6 Glycosyl hydrolase family 43. This glycosyl 99.2
cd08984294 GH43_5 Glycosyl hydrolase family 43. This glycosyl 99.09
cd08992349 GH43_like_1 Glycosyl hydrolase family 43, uncharac 99.08
cd08980288 GH43_1 Glycosyl hydrolase family 43. This glycosyl 99.06
COG1621 486 SacC Beta-fructosidases (levanase/invertase) [Carb 99.03
cd08996298 GH32_B_Fructosidase Glycosyl hydrolase family 32, 99.01
cd08983276 GH43_4 Glycosyl hydrolase family 43. This glycosyl 98.99
cd08979276 GH_J Glycosyl hydrolase families 32 and 68, which 98.99
cd08997349 GH68 Glycosyl hydrolase family 68, includes levans 98.77
PF03664271 Glyco_hydro_62: Glycosyl hydrolase family 62 ; Int 98.73
PF00251308 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-t 98.72
TIGR01322445 scrB_fam sucrose-6-phosphate hydrolase. 98.71
smart00640437 Glyco_32 Glycosyl hydrolases family 32. 98.69
cd08993268 GH43_DUF377 Glycosyl hydrolase family 43 containin 98.6
COG3507549 XynB Beta-xylosidase [Carbohydrate transport and m 98.52
PF04041312 DUF377: Domain of unknown function (DUF377); Inter 98.49
KOG0228 571 consensus Beta-fructofuranosidase (invertase) [Car 98.0
cd08987303 GH62 Glycosyl hydrolase family 62, characterized a 97.55
COG1621486 SacC Beta-fructosidases (levanase/invertase) [Carb 97.52
PF04041312 DUF377: Domain of unknown function (DUF377); Inter 97.19
PF02435428 Glyco_hydro_68: Levansucrase/Invertase; InterPro: 96.67
KOG0228571 consensus Beta-fructofuranosidase (invertase) [Car 96.08
COG2152314 Predicted glycosylase [Carbohydrate transport and 95.86
PF13088275 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 95.12
COG2152314 Predicted glycosylase [Carbohydrate transport and 94.21
PF13088275 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 94.06
COG3940324 Predicted beta-xylosidase [General function predic 93.41
PF13810316 DUF4185: Domain of unknown function (DUF4185) 93.16
PF03664271 Glyco_hydro_62: Glycosyl hydrolase family 62 ; Int 88.36
>cd08985 GH43_6 Glycosyl hydrolase family 43 Back     alignment and domain information 
Probab=100.00  E-value=2.1e-56  Score=446.04  Aligned_cols=264  Identities=57%  Similarity=1.031  Sum_probs=232.1

Q ss_pred             EEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCcccccccCCCCeee
Q 011114          175 IQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLE  254 (493)
Q Consensus       175 I~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~~~~~~iW  254 (493)
                      |+|||++|++.+  ++||||+|++....          ..+++|.||+|+||+||+++|.||+..+.  ...++..+.+|
T Consensus         1 i~ah~~~i~~~~--~~yY~ygs~~~~~~----------~~~~gi~~~sS~DLvnW~~~g~vl~~~~~--~~~~~~~~~~w   66 (265)
T cd08985           1 IQAHGGGILKVG--GTYYWYGENKGGGD----------TAFGGVSCYSSTDLVNWTFEGLALTPEED--SADLGPGRIIE   66 (265)
T ss_pred             CccccCceEEEC--CEEEEEEEecCCCC----------cccccEEEEECCCCccceECceecccccc--ccccccCcEEE
Confidence            679999999864  89999999875321          24689999999999999999999987652  11234577899


Q ss_pred             eceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCCCCcCCceEEEcCCCcEEEEEEecCCCceE
Q 011114          255 RPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELH  334 (493)
Q Consensus       255 AP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g~~siDPsvF~DdDGk~YL~~g~~~n~~i~  334 (493)
                      ||+|+||+++|+|||||++.+.++...+||||+|++|+|||++.+...+.+..+|||+||+|+||++||+|+++.+..++
T Consensus        67 aP~v~y~~~~g~Y~m~~~~~~~~~~~~~igvA~Sd~p~Gpf~~~~~~~~~~~~~~Dp~vf~DdDG~~Yl~~~~~~~~~i~  146 (265)
T cd08985          67 RPKVIYNAKTGKYVMWMHIDSSDYSDARVGVATSDTPTGPYTYLGSFRPLGYQSRDFGLFVDDDGTAYLLYSDRDNSDLY  146 (265)
T ss_pred             CCeEEEeCCCCEEEEEEEeCCCCCcceeEEEEEeCCCCCCCEECCccCCCCCCccCCceEEcCCCCEEEEEecCCCCceE
Confidence            99999999999999999998655567899999999999999998766666788999999999999999999987667899


Q ss_pred             EEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEECCCCCCceeCCCccccCCccceee
Q 011114          335 IGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPWEDMGNPCIGGNKVFRLT  414 (493)
Q Consensus       335 iaeLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~~Sdsp~GPwt~~g~Pv~~~~~~~~~~  414 (493)
                      +++|++|++++.++...+..+...|||+|||++|+|||+||++++|.++...+++|++|+|||+..+++..++     .+
T Consensus       147 i~~L~~d~~~~~~~~~~~~~~~~~EaP~i~K~~g~YYL~~S~~t~~~~~~~~y~~s~s~~GP~~~~~~~~~~~-----~~  221 (265)
T cd08985         147 IYRLTDDYLSVTGEVTTVFVGAGREAPAIFKRNGKYYLLTSGLTGWNPNDARYATATSILGPWTDLGNPGPGG-----ST  221 (265)
T ss_pred             EEEeCCCcccccceEEEccCCCccccceEEEECCEEEEEEccCCCccCCceEEEEecCCCCCccccCcCCCCC-----Cc
Confidence            9999999999999887777788999999999999999999999999888777889999999999999885443     58


Q ss_pred             ccCCCceEEEcccC-CcccEEEEEeEeCCCCCCCCeeEEEEEEE
Q 011114          415 TFFAQSTYVIPLAG-LPGLYIFMADRWNPADLRESRYIWLPLIV  457 (493)
Q Consensus       415 t~gsq~~~V~~~~G-~~~~yi~y~d~w~~~~~~~sR~v~lPl~~  457 (493)
                      +|++|+++|++++| ++++||||||||++.++.++|||||||+|
T Consensus       222 t~~sq~~~v~~~~g~~~~~~~~~~drw~~~~~~~s~yvwlp~~~  265 (265)
T cd08985         222 TYGSQTTFVLPVPGSKQTTYIYMGDRWNPSDLGDSRYVWLPLTF  265 (265)
T ss_pred             EECCCcceEEEeCCCCCCEEEEEEcccCCCCCCCCEEEEEEeeC
Confidence            99999999999998 44789999999999999999999999975

This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08988 GH43_ABN Glycosyl hydrolase family 43 Back     alignment and domain information
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases Back     alignment and domain information
>cd08981 GH43_2 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase Back     alignment and domain information
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase Back     alignment and domain information
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase Back     alignment and domain information
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase Back     alignment and domain information
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase Back     alignment and domain information
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08986 GH43_7 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F Back     alignment and domain information
>cd08982 GH43_3 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08980 GH43_1 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68 Back     alignment and domain information
>cd08984 GH43_5 Glycosyl hydrolase family 43 Back     alignment and domain information
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd08983 GH43_4 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases Back     alignment and domain information
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32 Back     alignment and domain information
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase Back     alignment and domain information
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins Back     alignment and domain information
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins Back     alignment and domain information
>COG3940 Predicted beta-xylosidase [General function prediction only] Back     alignment and domain information
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J Back     alignment and domain information
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases Back     alignment and domain information
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function Back     alignment and domain information
>cd08994 GH43_like_2 Glycosyl hydrolase 43-like family consists of hypothetical proteins Back     alignment and domain information
>cd08990 GH43_AXH_like Glycosyl hydrolase family 43, includes arabinoxylan arabinofuranohydrolase, beta-xylosidase, endo-1,4-beta-xylanase, alpha-L-arabinofuranosidase Back     alignment and domain information
>cd08999 GH43_ABN_2 Glycosyl hydrolase family 43 Back     alignment and domain information
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase Back     alignment and domain information
>smart00640 Glyco_32 Glycosyl hydrolases family 32 Back     alignment and domain information
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd08986 GH43_7 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd09004 GH43_bXyl Glycosyl hydrolase family 43, includes mostly 1,4-beta-xylanases Back     alignment and domain information
>cd08772 GH43_62_32_68 Glycosyl hydrolase families: GH43, GH62, GH32, GH68 Back     alignment and domain information
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure [] Back     alignment and domain information
>cd08988 GH43_ABN Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08995 GH32_Aec43_like Glycosyl hydrolase family 32 Back     alignment and domain information
>cd08991 GH43_bXyl_2 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08981 GH43_2 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd09003 GH43_AXH_1 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08998 GH43_ABN_1 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd09002 GH43_XYL_3 Glycosyl hydrolase family 43, beta-D-xylosidase Back     alignment and domain information
>cd09000 GH43_XYL_1 Glycosyl hydrolase family 43, beta-D-xylosidase Back     alignment and domain information
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd08989 GH43_XYL Glycosyl hydrolase family 43, beta-D-xylosidase Back     alignment and domain information
>cd08978 GH_F Glycosyl hydrolase families 43 and 62 form CAZY clan GH-F Back     alignment and domain information
>cd09001 GH43_XYL_2 Glycosyl hydrolase family 43, beta-D-xylosidase Back     alignment and domain information
>cd08982 GH43_3 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08985 GH43_6 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08984 GH43_5 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08992 GH43_like_1 Glycosyl hydrolase family 43, uncharacterized proteins Back     alignment and domain information
>cd08980 GH43_1 Glycosyl hydrolase family 43 Back     alignment and domain information
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd08996 GH32_B_Fructosidase Glycosyl hydrolase family 32, beta-fructosidases Back     alignment and domain information
>cd08983 GH43_4 Glycosyl hydrolase family 43 Back     alignment and domain information
>cd08979 GH_J Glycosyl hydrolase families 32 and 68, which for the clan GH-J Back     alignment and domain information
>cd08997 GH68 Glycosyl hydrolase family 68, includes levansucrase, beta-fructofuranosidase and inulosucrase Back     alignment and domain information
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00251 Glyco_hydro_32N: Glycosyl hydrolases family 32 N-terminal domain; InterPro: IPR013148 This domain corresponds to the N-terminal domain of glycosyl transferase family 32 which forms a five bladed beta propeller structure [] Back     alignment and domain information
>TIGR01322 scrB_fam sucrose-6-phosphate hydrolase Back     alignment and domain information
>smart00640 Glyco_32 Glycosyl hydrolases family 32 Back     alignment and domain information
>cd08993 GH43_DUF377 Glycosyl hydrolase family 43 containing a domain of unknown function Back     alignment and domain information
>COG3507 XynB Beta-xylosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety Back     alignment and domain information
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd08987 GH62 Glycosyl hydrolase family 62, characterized arabinofuranosidases Back     alignment and domain information
>COG1621 SacC Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF04041 DUF377: Domain of unknown function (DUF377); InterPro: IPR007184 Glycosidases or glycosyl hydrolases are a big and widespread family of enzymes that hydrolyse the glycosidic bonds between carbohydrates or between a carbohydrate and an aglycone moiety Back     alignment and domain information
>PF02435 Glyco_hydro_68: Levansucrase/Invertase; InterPro: IPR003469 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG0228 consensus Beta-fructofuranosidase (invertase) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A Back     alignment and domain information
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A Back     alignment and domain information
>COG3940 Predicted beta-xylosidase [General function prediction only] Back     alignment and domain information
>PF13810 DUF4185: Domain of unknown function (DUF4185) Back     alignment and domain information
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
3vsf_A 526 Crystal Structure Of 1,3gal43a, An Exo-Beta-1,3-Gal 6e-53
3nqh_A 441 Crystal Structure Of A Glycosyl Hydrolase (Bt_2959) 1e-27
3kst_A306 Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811 2e-09
3qef_A307 The Structure And Function Of An Arabinan-Specific 1e-07
3qee_A307 The Structure And Function Of An Arabinan-Specific 1e-07
3qed_A314 The Structure And Function Of An Arabinan-Specific 7e-07
3qz4_A311 Crystal Structure Of An Endo-1,4-Beta-Xylanase D (B 1e-06
>pdb|3VSF|A Chain A, Crystal Structure Of 1,3gal43a, An Exo-Beta-1,3-Galactanase From Clostridium Thermocellum Length = 526 Back     alignment and structure 
Iteration: 1

 Score =  205 bits (521), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 121/308 (39%), Positives = 172/308 (55%), Gaps = 40/308 (12%)
Query: 164 GRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSS 223
           G  + DT G  I AHGGG+L  +    Y+WYGEY+D                +GV CY S
Sbjct: 45  GTQFKDTSGNVIHAHGGGML--KHGDYYYWYGEYRDDSNL-----------FLGVSCYRS 91
Query: 224 KDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDD-CNYTKAA 282
           KD+  W+  G VL+    N   +L   N+ ERPKV+YN  TG++VMWMH ++  NY +A 
Sbjct: 92  KDLVNWEYRGEVLS---RNSAPELNHCNI-ERPKVMYNASTGEFVMWMHWENGINYGQAR 147
Query: 283 VGVAISDYPTGPFDYLYSKRPH-----------GFDSRDMTIFKDDDGVAYLVYSSEDNS 331
             VA S  P G F Y+ S RP            G+ SRD  +F D DG  Y + ++ +N 
Sbjct: 148 AAVAYSKTPDGKFTYIRSFRPMQDTGVMDHGLPGYMSRDCNVFVDTDGKGYFISAANENM 207
Query: 332 ELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAE 391
           +LH+  LT DY +++++  ++ VGQ REAP L K  G YY++TSGCTGW PN+A    ++
Sbjct: 208 DLHLYELTPDYKNIASLKAKLFVGQQREAPCLIKRNGYYYLITSGCTGWNPNQAKYAYSK 267
Query: 392 SIMGPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPGL-YIFMADRWNPA---DLRE 447
            +   W  + N    GN     TT+ +Q T++IP+ G  G  Y++M DRW  A    + +
Sbjct: 268 DLASGWSQLYNL---GNS----TTYRSQPTFIIPVQGSSGTSYLYMGDRWAGAWGGKVND 320
Query: 448 SRYIWLPL 455
           S+Y+WLPL
Sbjct: 321 SQYVWLPL 328
>pdb|3NQH|A Chain A, Crystal Structure Of A Glycosyl Hydrolase (Bt_2959) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.11 A Resolution Length = 441 Back     alignment and structure
>pdb|3KST|A Chain A, Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811807.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A Resolution Length = 306 Back     alignment and structure
>pdb|3QEF|A Chain A, The Structure And Function Of An Arabinan-Specific Alpha-1,2- Arabinofuranosidase Identified From Screening The Activities Of Bacterial Gh43 Glycoside Hydrolases Length = 307 Back     alignment and structure
>pdb|3QEE|A Chain A, The Structure And Function Of An Arabinan-Specific Alpha-1,2- Arabinofuranosidase Identified From Screening The Activities Of Bacterial Gh43 Glycoside Hydrolases Length = 307 Back     alignment and structure
>pdb|3QED|A Chain A, The Structure And Function Of An Arabinan-Specific Alpha-1,2- Arabinofuranosidase Identified From Screening The Activities Of Bacterial Gh43 Glycoside Hydrolases Length = 314 Back     alignment and structure
>pdb|3QZ4|A Chain A, Crystal Structure Of An Endo-1,4-Beta-Xylanase D (Bt_3675) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.74 A Resolution Length = 311 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
3nqh_A 441 Glycosyl hydrolase; structural genomics, joint cen 6e-87
3kst_A306 Endo-1,4-beta-xylanase; structural genomics, joint 3e-25
3qee_A307 Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 1e-23
3qz4_A311 Endo-1,4-beta-xylanase D; 5-bladed beta-propeller 1e-22
3c7f_A 487 Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta- 4e-19
2x8s_A 470 Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 2e-17
3r4z_A374 Glycosyl hydrolase family 32, N terminal; AGAR met 2e-17
4ak5_A404 Anhydro-alpha-L-galactosidase; hydrolase, marine g 2e-16
3cu9_A314 Intracellular arabinanase; glycosyl hydrolase, hig 3e-15
1uv4_A293 Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hy 6e-15
3p2n_A408 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-p 2e-14
1gyh_A318 Arabinan endo-1,5-alpha-L-arabinosidase A; arabina 1e-13
3cpn_A330 Beta-xylosidase, family 43 glycosyl hydrolase; str 2e-10
3zxk_A 542 Hiaxhd3; hydrolase, sugar binding protein; HET: XY 1e-08
3akh_A 468 Putative secreted alpha L-arabinofuranosidase II; 3e-08
2exh_A 535 Beta-D-xylosidase; glykosidase, hydrolsase, family 6e-07
1yif_A 533 Beta-1,4-xylosidase; glycosidase, xylan, structura 7e-07
3c2u_A 538 Xylosidase/arabinosidase; tetramer, glycoside hydr 9e-07
1yrz_A 528 Xylan beta-1,4-xylosidase; structural genomics, ny 5e-06
>3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron} Length = 441 Back     alignment and structure
 Score =  273 bits (698), Expect = 6e-87
 Identities = 97/318 (30%), Positives = 138/318 (43%), Gaps = 29/318 (9%)

Query: 160 YYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVG 219
               G  W D  G  + AHG  I+ +     Y+ +GEYK   +              G  
Sbjct: 7   VVNNGIPWFDDRGEIVNAHGACIVEENG--RYYLFGEYKSDKSNAFP----------GFS 54

Query: 220 CYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYT 279
           CYSS D+  WK E +VL  + +     L    V ER KV+    TG+YVM+MH DD NY 
Sbjct: 55  CYSSDDLVNWKFERVVLPMQSS---GILGPDRVGERVKVMKCPSTGEYVMYMHADDMNYK 111

Query: 280 KAAVGVAISDYPTGPFDYLYSKRPHGFDSR--DMTIFKDDDGVAYLVYSSEDNSELHIGP 337
              +G A      G +         G   R  DM  ++D DG  YL+          +  
Sbjct: 112 DPHIGYATCSTIAGEYKLHGPLLYEGKPIRRWDMGTYQDTDGTGYLLLHG-----GIVYR 166

Query: 338 LTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIMGPW 397
           L+ DY      V   + G H E+PA+FK  GTY+ + S  T W  N+     A S+ GPW
Sbjct: 167 LSKDYRTAEEKVVSGVGGSHGESPAMFKKDGTYFFLFSNLTSWEKNDNFYFTAPSVKGPW 226

Query: 398 EDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPG-LYIFMADRWN-PADLRESRYIWLPL 455
              G     G+      T+ +Q+T+V PL      + +FM DRW+ P     + Y+W+P+
Sbjct: 227 TRQGLFAPEGS-----LTYNSQTTFVFPLKCGEDTIPMFMGDRWSYPHQASAATYVWMPM 281

Query: 456 IVRGPADRPLEYNFGFPL 473
            V G      EY   + +
Sbjct: 282 QVDGTKLSIPEYWPSWDV 299
>3kst_A Endo-1,4-beta-xylanase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 306 Back     alignment and structure
>3qee_A Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 5-bladed beta propeller, hydrolase; 1.64A {Cellvibrio japonicus} PDB: 3qed_A* 3qef_A* Length = 307 Back     alignment and structure
>3qz4_A Endo-1,4-beta-xylanase D; 5-bladed beta-propeller fold, xylan degradation, structural joint center for structural genomics, JCSG; HET: EPE; 1.74A {Bacteroides thetaiotaomicron} Length = 311 Back     alignment and structure
>3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A* Length = 487 Back     alignment and structure
>2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A Length = 470 Back     alignment and structure
>3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism, neoagarobiose, 3,6-anhydro-L-galactose, ALP galactopyranose, bioenergy; HET: GLA; 1.55A {Saccharophagus degradans} PDB: 3r4y_A* Length = 374 Back     alignment and structure
>4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside hydrolase, marine polysaccharide degradation, marine cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius} PDB: 4ak7_A* 4ak6_A Length = 404 Back     alignment and structure
>3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution, beta-prope geobacillus stearothermophilus, hydrolase; HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB: 3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A Length = 314 Back     alignment and structure
>1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase, propeller, catalysis; 1.50A {Bacillus subtilis} SCOP: b.67.2.1 Length = 293 Back     alignment and structure
>3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller, glycoside hydrolase family GH117, agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia galactanivorans} Length = 408 Back     alignment and structure
>1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase, propeller, catalysis, pseudomonas; 1.89A {Cellvibrio cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B* Length = 318 Back     alignment and structure
>3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A {Humicola insolens} PDB: 3zxj_A* 3zxl_A* Length = 542 Back     alignment and structure
>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* Length = 468 Back     alignment and structure
>2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP: b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A* Length = 535 Back     alignment and structure
>1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.29.1.23 b.67.2.1 Length = 533 Back     alignment and structure
>3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* Length = 538 Back     alignment and structure
>1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target T1997, PSI, structure initiative; 2.00A {Bacillus halodurans} SCOP: b.29.1.23 b.67.2.1 Length = 528 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query493
3nqh_A 441 Glycosyl hydrolase; structural genomics, joint cen 100.0
3vsf_A 526 Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana 100.0
3qz4_A311 Endo-1,4-beta-xylanase D; 5-bladed beta-propeller 100.0
3kst_A306 Endo-1,4-beta-xylanase; structural genomics, joint 100.0
3qee_A307 Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 100.0
1uv4_A293 Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hy 100.0
3c7f_A 487 Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta- 100.0
3cu9_A314 Intracellular arabinanase; glycosyl hydrolase, hig 100.0
3cpn_A330 Beta-xylosidase, family 43 glycosyl hydrolase; str 100.0
3c2u_A 538 Xylosidase/arabinosidase; tetramer, glycoside hydr 100.0
1gyh_A318 Arabinan endo-1,5-alpha-L-arabinosidase A; arabina 100.0
3zxk_A 542 Hiaxhd3; hydrolase, sugar binding protein; HET: XY 100.0
1yrz_A 528 Xylan beta-1,4-xylosidase; structural genomics, ny 100.0
2exh_A 535 Beta-D-xylosidase; glykosidase, hydrolsase, family 100.0
1yif_A 533 Beta-1,4-xylosidase; glycosidase, xylan, structura 100.0
2x8s_A470 Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 100.0
3k1u_A330 Beta-xylosidase, family 43 glycosyl hydrolase; str 100.0
3akh_A 468 Putative secreted alpha L-arabinofuranosidase II; 100.0
3r4z_A374 Glycosyl hydrolase family 32, N terminal; AGAR met 99.88
4ak5_A404 Anhydro-alpha-L-galactosidase; hydrolase, marine g 99.85
3p2n_A408 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-p 99.84
1w18_A493 Levansucrase; transferase, fructosyl transferase, 99.8
1w2t_A 432 Beta fructosidase; hydrolase, glycosidase, inverta 99.78
1oyg_A447 Levansucrase; glycoside hydrolase, beta-propeller, 99.73
2yfr_A571 Levansucrase, inulosucrase; fructosyltransferase, 99.65
3vss_A496 Beta-fructofuranosidase; glycoside hydrolase famil 99.6
3kst_A306 Endo-1,4-beta-xylanase; structural genomics, joint 99.57
3qee_A307 Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 99.53
3qz4_A311 Endo-1,4-beta-xylanase D; 5-bladed beta-propeller 99.5
1y4w_A 518 EXO-inulinase; glycoside hydrolase FAMI crystallog 99.48
3kf3_A 509 Invertase; GH32, glycoprotein, glycosidase, hydrol 99.47
3pij_A 526 Beta-fructofuranosidase; five-bladed beta-propelle 99.45
3r4z_A374 Glycosyl hydrolase family 32, N terminal; AGAR met 99.44
3p2n_A408 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-p 99.43
1vkd_A338 Conserved hypothetical protein TM1225; structural 99.41
3sc7_X 516 Inulinase; glycoside hydrolase family 32, glycosyl 99.4
4ffh_A 492 Levan fructotransferase; glycoside hydrolase; HET: 99.38
3ugf_A 546 Sucrose:(sucrose/fructan) 6-fructosyltransferase; 99.38
1gyh_A318 Arabinan endo-1,5-alpha-L-arabinosidase A; arabina 99.37
3c7f_A487 Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta- 99.35
2ac1_A 541 Invertase; five fold beta propeller, hydrolase; HE 99.34
1st8_A 543 Fructan 1-exohydrolase IIA; five fold beta propell 99.33
3cu9_A314 Intracellular arabinanase; glycosyl hydrolase, hig 99.32
3nqh_A441 Glycosyl hydrolase; structural genomics, joint cen 99.27
1uv4_A293 Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hy 99.27
4ak5_A404 Anhydro-alpha-L-galactosidase; hydrolase, marine g 99.26
3taw_A356 Hypothetical glycoside hydrolase; 5-bladed beta-pr 99.26
3cpn_A330 Beta-xylosidase, family 43 glycosyl hydrolase; str 99.25
3taw_A356 Hypothetical glycoside hydrolase; 5-bladed beta-pr 99.24
3qc2_A364 Glycosyl hydrolase; 5-bladed beta propeller fold, 99.23
3c2u_A 538 Xylosidase/arabinosidase; tetramer, glycoside hydr 99.22
3k1u_A330 Beta-xylosidase, family 43 glycosyl hydrolase; str 99.2
2exh_A 535 Beta-D-xylosidase; glykosidase, hydrolsase, family 99.2
1yif_A 533 Beta-1,4-xylosidase; glycosidase, xylan, structura 99.19
2x8s_A470 Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 99.17
1yrz_A528 Xylan beta-1,4-xylosidase; structural genomics, ny 99.13
3akh_A468 Putative secreted alpha L-arabinofuranosidase II; 99.08
3lig_A 634 Fructosyltransferase; five bladed beta-propeller f 99.08
3vsf_A526 Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana 99.06
3qc2_A364 Glycosyl hydrolase; 5-bladed beta propeller fold, 99.04
3zxk_A 542 Hiaxhd3; hydrolase, sugar binding protein; HET: XY 99.01
1vkd_A338 Conserved hypothetical protein TM1225; structural 98.64
1w18_A493 Levansucrase; transferase, fructosyl transferase, 98.61
1y4w_A518 EXO-inulinase; glycoside hydrolase FAMI crystallog 98.59
3pij_A 526 Beta-fructofuranosidase; five-bladed beta-propelle 98.53
3kf3_A509 Invertase; GH32, glycoprotein, glycosidase, hydrol 98.45
4ffh_A492 Levan fructotransferase; glycoside hydrolase; HET: 98.38
1w2t_A 432 Beta fructosidase; hydrolase, glycosidase, inverta 98.36
1oyg_A447 Levansucrase; glycoside hydrolase, beta-propeller, 98.29
3ugf_A546 Sucrose:(sucrose/fructan) 6-fructosyltransferase; 98.16
3sc7_X516 Inulinase; glycoside hydrolase family 32, glycosyl 98.14
3vss_A496 Beta-fructofuranosidase; glycoside hydrolase famil 98.02
2yfr_A571 Levansucrase, inulosucrase; fructosyltransferase, 98.0
2ac1_A541 Invertase; five fold beta propeller, hydrolase; HE 97.99
1st8_A 543 Fructan 1-exohydrolase IIA; five fold beta propell 97.6
3lig_A 634 Fructosyltransferase; five bladed beta-propeller f 95.73
3a72_A355 EXO-arabinanase; arabinase, glycosyl hydrolase, hy 94.95
4hbs_A416 Putative hydrolase; 5-bladed beta-propeller, struc 94.9
2ydt_A367 EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 94.62
4hbs_A416 Putative hydrolase; 5-bladed beta-propeller, struc 94.48
3a72_A355 EXO-arabinanase; arabinase, glycosyl hydrolase, hy 92.75
2ydt_A367 EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 88.77
4fj6_A523 Glycoside hydrolase family 33, candidate sialidas; 86.8
>3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron} Back     alignment and structure
Probab=100.00  E-value=1.7e-56  Score=471.92  Aligned_cols=293  Identities=33%  Similarity=0.589  Sum_probs=246.6

Q ss_pred             CeEEeecCCceeCCCCCcEEeeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceec
Q 011114          157 DSFYYYPGRIWLDTEGAPIQAHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVL  236 (493)
Q Consensus       157 ~~~yi~pG~~w~dt~G~pI~ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL  236 (493)
                      ....|+||..|.|++|++|+||||+|++.  +|+||||+|++....          ..++++.||+|+||+||+.+|.+|
T Consensus         4 ~~~~i~~G~~W~dt~Gn~I~aHDPsIi~~--~g~YYly~T~~~~~~----------~~~~gi~v~sS~DLvnW~~~G~aL   71 (441)
T 3nqh_A            4 TEKVVNNGIPWFDDRGEIVNAHGACIVEE--NGRYYLFGEYKSDKS----------NAFPGFSCYSSDDLVNWKFERVVL   71 (441)
T ss_dssp             CCCEEETTSCCBCTTSCBCCCEEEEEEEE--TTEEEEEEECCCSSC----------SSCCCEEEEEESSSSSCEEEEEEE
T ss_pred             ccceEECCCEeECCCCCEEEccCCEEEEE--CCEEEEEEEcCCccC----------CCCCCeeEEECCCCCCcEECceee
Confidence            34689999999999999999999999996  599999999864211          236899999999999999999999


Q ss_pred             cCCCcccccccCCCCeeeeceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCCCCCCceecccCCCCC--CCcCCceEE
Q 011114          237 AAEETNETHDLYKLNVLERPKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDYPTGPFDYLYSKRPHG--FDSRDMTIF  314 (493)
Q Consensus       237 ~~~~~~~~~~~~~~~~iWAP~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~SdsP~GPf~~~~~~~p~g--~~siDPsvF  314 (493)
                      +..+..+   +..++.+|||+|+|++++|+|||||++...++..++||||+|++|+|||++.++..+.+  ..+|||+||
T Consensus        72 ~~~~~~~---~~~~~~~WAP~V~y~~~dGkYYLyyt~~~~~~~~~~igVAtSdsP~GPwt~~gpl~~~g~~~~~IDPsvF  148 (441)
T 3nqh_A           72 PMQSSGI---LGPDRVGERVKVMKCPSTGEYVMYMHADDMNYKDPHIGYATCSTIAGEYKLHGPLLYEGKPIRRWDMGTY  148 (441)
T ss_dssp             CCCSSST---TSTTEEEEEEEEEECTTTCCEEEEEEEEETTSCSCEEEEEEESSTTSCCEEEEECEETTEECCCCSEEEE
T ss_pred             ccCCccc---cCCCCccCCceeEEEccCCEEEEEEEeCCCCCCcceEEEEEeCCCCCCceEcceeecCCCcccccCceEE
Confidence            8765422   23456799999999888999999999987655678999999999999999865443333  357999999


Q ss_pred             EcCCCcEEEEEEecCCCceEEEEcCCCCCCccccEEEeecCceeeeeEEEEECCEEEEEEeCCCCCCCCcEEEEEECCCC
Q 011114          315 KDDDGVAYLVYSSEDNSELHIGPLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEALVHAAESIM  394 (493)
Q Consensus       315 ~DdDGk~YL~~g~~~n~~i~iaeLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~yS~~tg~~~n~~v~~~Sdsp~  394 (493)
                      +|+||++||+|++     ..|++|++|++++.+++..+..+...|||+|||++|+|||+||.++||.++...+++|+||+
T Consensus       149 ~DdDGk~YL~~g~-----~~I~eLs~D~~~~~g~~~~i~~g~~~EgP~i~K~~G~YYL~~S~~~g~~~~~~~~arS~s~~  223 (441)
T 3nqh_A          149 QDTDGTGYLLLHG-----GIVYRLSKDYRTAEEKVVSGVGGSHGESPAMFKKDGTYFFLFSNLTSWEKNDNFYFTAPSVK  223 (441)
T ss_dssp             ECTTSCEEEEEGG-----GEEEEECTTSSSEEEEEESCSTTCCCEEEEEEEETTEEEEEEECSCTTSCCCCEEEEESSTT
T ss_pred             EeCCCCEEEEeCC-----CcEEEeCCccccccCceEEeCCCCceECcEEEEECCEEEEEEeCCCCcCCCceEEEEeCCCC
Confidence            9999999999973     35789999999999988777777789999999999999999999888887777778999999


Q ss_pred             CCceeCCCccccCCccceeeccCCCceEEEcccCCcc-cEEEEEeEeC-CCCCCCCeeEEEEEEEcCCCCCCCccccCCC
Q 011114          395 GPWEDMGNPCIGGNKVFRLTTFFAQSTYVIPLAGLPG-LYIFMADRWN-PADLRESRYIWLPLIVRGPADRPLEYNFGFP  472 (493)
Q Consensus       395 GPwt~~g~Pv~~~~~~~~~~t~gsq~~~V~~~~G~~~-~yi~y~d~w~-~~~~~~sR~v~lPl~~~~~~~~~~~~~~~~~  472 (493)
                      |||+.+++++..+     ..+|++|+++|++++|.++ .||+|+|+|. +.+..++|||||||++++.            
T Consensus       224 GPw~~~g~i~~~~-----~~t~~sQ~t~vl~v~G~~~~~~i~~GDrW~~~~~~~~s~yvwlPl~~~~~------------  286 (441)
T 3nqh_A          224 GPWTRQGLFAPEG-----SLTYNSQTTFVFPLKCGEDTIPMFMGDRWSYPHQASAATYVWMPMQVDGT------------  286 (441)
T ss_dssp             CCCEEEEESSCTT-----SHHHHCEEEEEEEEEETTEEEEEEEEEECCSSCHHHHCEEEEEECEEETT------------
T ss_pred             CCceECCccCCCC-----CccCcCCCceEEEeCCCCCeEEEEeccccCCCCcCCCCceEEeeEEECCC------------
Confidence            9999999988543     4899999999999998655 5999999999 4455789999999999862            


Q ss_pred             ccceeeEEec-ccccCCC
Q 011114          473 LWSRVSIYWH-KKWRLPS  489 (493)
Q Consensus       473 ~~~~~~~~w~-~~w~~~~  489 (493)
                         .++|.|. ++|+|+.
T Consensus       287 ---~~~~~~~w~~w~~~~  301 (441)
T 3nqh_A          287 ---KLSIPEYWPSWDVDK  301 (441)
T ss_dssp             ---EEECCSCCSEEETTT
T ss_pred             ---EEEEEeecccCCCcc
Confidence               4677432 5899875
>3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* Back     alignment and structure
>3qz4_A Endo-1,4-beta-xylanase D; 5-bladed beta-propeller fold, xylan degradation, structural joint center for structural genomics, JCSG; HET: EPE; 1.74A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3kst_A Endo-1,4-beta-xylanase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3qee_A Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 5-bladed beta propeller, hydrolase; 1.64A {Cellvibrio japonicus} PDB: 3qed_A* 3qef_A* Back     alignment and structure
>1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase, propeller, catalysis; 1.50A {Bacillus subtilis} SCOP: b.67.2.1 Back     alignment and structure
>3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A* Back     alignment and structure
>3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution, beta-prope geobacillus stearothermophilus, hydrolase; HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB: 3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A Back     alignment and structure
>3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* Back     alignment and structure
>1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase, propeller, catalysis, pseudomonas; 1.89A {Cellvibrio cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B* Back     alignment and structure
>3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A {Humicola insolens} PDB: 3zxj_A* 3zxl_A* Back     alignment and structure
>1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target T1997, PSI, structure initiative; 2.00A {Bacillus halodurans} SCOP: b.29.1.23 b.67.2.1 Back     alignment and structure
>2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP: b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A* Back     alignment and structure
>1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.29.1.23 b.67.2.1 Back     alignment and structure
>2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A Back     alignment and structure
>3k1u_A Beta-xylosidase, family 43 glycosyl hydrolase; structural genomics, APC20493, family 43 GL hydrolase, PSI-2; HET: MSE; 1.55A {Clostridium acetobutylicum} Back     alignment and structure
>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* Back     alignment and structure
>3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism, neoagarobiose, 3,6-anhydro-L-galactose, ALP galactopyranose, bioenergy; HET: GLA; 1.55A {Saccharophagus degradans} PDB: 3r4y_A* Back     alignment and structure
>4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside hydrolase, marine polysaccharide degradation, marine cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius} PDB: 4ak7_A* 4ak6_A Back     alignment and structure
>3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller, glycoside hydrolase family GH117, agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia galactanivorans} Back     alignment and structure
>1w18_A Levansucrase; transferase, fructosyl transferase, glycosyltransferase; 2.5A {Gluconacetobacter diazotrophicus} Back     alignment and structure
>1w2t_A Beta fructosidase; hydrolase, glycosidase, invertase, raffinose; HET: SUC GLA CIT; 1.87A {Thermotoga maritima} SCOP: b.29.1.19 b.67.2.3 PDB: 1uyp_A* Back     alignment and structure
>1oyg_A Levansucrase; glycoside hydrolase, beta-propeller, TR; 1.50A {Bacillus subtilis} SCOP: b.67.2.2 PDB: 1pt2_A* 3byl_A 3byn_A* 3byk_A 3byj_A 2vdt_A 3om4_A* 3om7_C* 3om6_A* 3om5_A* 3om2_A* Back     alignment and structure
>2yfr_A Levansucrase, inulosucrase; fructosyltransferase, glycoside hydrolase family GH68, trans sugar utilization; 1.75A {Lactobacillus johnsonii} PDB: 2yft_A* 2yfs_A* Back     alignment and structure
>3vss_A Beta-fructofuranosidase; glycoside hydrolase family 68, beta-propeller, hydrolase; HET: FRU; 1.97A {Arthrobacter} PDB: 3vsr_A* Back     alignment and structure
>3kst_A Endo-1,4-beta-xylanase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3qee_A Beta-xylosidase/alpha-L-arabinfuranosidase, Gly43; 5-bladed beta propeller, hydrolase; 1.64A {Cellvibrio japonicus} PDB: 3qed_A* 3qef_A* Back     alignment and structure
>3qz4_A Endo-1,4-beta-xylanase D; 5-bladed beta-propeller fold, xylan degradation, structural joint center for structural genomics, JCSG; HET: EPE; 1.74A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1y4w_A EXO-inulinase; glycoside hydrolase FAMI crystallographic structure, native structure, hydrolase; HET: NAG; 1.55A {Aspergillus awamori} SCOP: b.29.1.19 b.67.2.3 PDB: 1y9g_A* 1y9m_A* Back     alignment and structure
>3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A* 3u75_A* 3u14_A* Back     alignment and structure
>3pij_A Beta-fructofuranosidase; five-bladed beta-propeller and beta-sandwich domains, glycos hydrolase family 32, probiotic bacteria, fructose; HET: FRU; 1.80A {Bifidobacterium longum} PDB: 3pig_A* Back     alignment and structure
>3r4z_A Glycosyl hydrolase family 32, N terminal; AGAR metabolism, neoagarobiose, 3,6-anhydro-L-galactose, ALP galactopyranose, bioenergy; HET: GLA; 1.55A {Saccharophagus degradans} PDB: 3r4y_A* Back     alignment and structure
>3p2n_A 3,6-anhydro-alpha-L-galactosidase; 5-bladed beta-propeller, glycoside hydrolase family GH117, agaro-oligosaccharides, CARB hydrolase; 1.95A {Zobellia galactanivorans} Back     alignment and structure
>1vkd_A Conserved hypothetical protein TM1225; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.10A {Thermotoga maritima} SCOP: b.67.2.4 Back     alignment and structure
>3sc7_X Inulinase; glycoside hydrolase family 32, glycosylation cytosol, hydrolase; HET: MAN NAG EPE; 1.50A {Aspergillus ficuum} PDB: 3rwk_X* Back     alignment and structure
>4ffh_A Levan fructotransferase; glycoside hydrolase; HET: SUC; 2.20A {Arthrobacter ureafaciens} PDB: 4ffi_A* 4ffg_A* 4fff_A Back     alignment and structure
>3ugf_A Sucrose:(sucrose/fructan) 6-fructosyltransferase; glycoside hydrolase family 32; HET: NAG FUC BMA MAN; 1.70A {Pachysandra terminalis} PDB: 3ugg_A* 3ugh_A* Back     alignment and structure
>1gyh_A Arabinan endo-1,5-alpha-L-arabinosidase A; arabinanase, hydrolase, propeller, catalysis, pseudomonas; 1.89A {Cellvibrio cellulosa} SCOP: b.67.2.1 PDB: 1gyd_B 1gye_B* Back     alignment and structure
>3c7f_A Xylanase D, endo-1,4-beta-xylanase; 5-bladed beta-propeller fold, beta-sandwich, xylan degradati hydrolase; HET: XYP; 1.55A {Bacillus subtilis} PDB: 3c7e_A* 3c7h_A* 3c7o_A* 3c7g_A* Back     alignment and structure
>2ac1_A Invertase; five fold beta propeller, hydrolase; HET: NAG MAN; 2.15A {Arabidopsis thaliana} PDB: 2xqr_A* 2oxb_A* 2qqw_A* 2qqv_A* 2qqu_A* Back     alignment and structure
>1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A* 2aey_A* 2aez_A* Back     alignment and structure
>3cu9_A Intracellular arabinanase; glycosyl hydrolase, high resolution, beta-prope geobacillus stearothermophilus, hydrolase; HET: GOL; 1.06A {Geobacillus stearothermophilus} PDB: 3d61_A* 3d60_A 3d5y_A 3d5z_A* 1wl7_A Back     alignment and structure
>3nqh_A Glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.11A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1uv4_A Arabinase, arabinan-endo 1,5-alpha-L-arabinase; hydrolase, propeller, catalysis; 1.50A {Bacillus subtilis} SCOP: b.67.2.1 Back     alignment and structure
>4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside hydrolase, marine polysaccharide degradation, marine cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius} PDB: 4ak7_A* 4ak6_A Back     alignment and structure
>3taw_A Hypothetical glycoside hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides distasonis} PDB: 3r67_A* Back     alignment and structure
>3taw_A Hypothetical glycoside hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.70A {Parabacteroides distasonis} PDB: 3r67_A* Back     alignment and structure
>3qc2_A Glycosyl hydrolase; 5-bladed beta propeller fold, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: PGE; 2.30A {Bacteroides ovatus} Back     alignment and structure
>3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A* Back     alignment and structure
>3k1u_A Beta-xylosidase, family 43 glycosyl hydrolase; structural genomics, APC20493, family 43 GL hydrolase, PSI-2; HET: MSE; 1.55A {Clostridium acetobutylicum} Back     alignment and structure
>2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase; HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP: b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A* Back     alignment and structure
>1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.29.1.23 b.67.2.1 Back     alignment and structure
>2x8s_A Endo-alpha-1,5-L-arabinanase; hydrolase; HET: AHR; 1.50A {Bacillus subtilis} PDB: 2x8f_A 2x8t_A 3lv4_A Back     alignment and structure
>1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target T1997, PSI, structure initiative; 2.00A {Bacillus halodurans} SCOP: b.29.1.23 b.67.2.1 Back     alignment and structure
>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A* Back     alignment and structure
>3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase; 1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A* 3ldr_A 3lih_A* 3lf7_A 3lfi_A* Back     alignment and structure
>3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* Back     alignment and structure
>3qc2_A Glycosyl hydrolase; 5-bladed beta propeller fold, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: PGE; 2.30A {Bacteroides ovatus} Back     alignment and structure
>3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A {Humicola insolens} PDB: 3zxj_A* 3zxl_A* Back     alignment and structure
>1vkd_A Conserved hypothetical protein TM1225; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.10A {Thermotoga maritima} SCOP: b.67.2.4 Back     alignment and structure
>1w18_A Levansucrase; transferase, fructosyl transferase, glycosyltransferase; 2.5A {Gluconacetobacter diazotrophicus} Back     alignment and structure
>1y4w_A EXO-inulinase; glycoside hydrolase FAMI crystallographic structure, native structure, hydrolase; HET: NAG; 1.55A {Aspergillus awamori} SCOP: b.29.1.19 b.67.2.3 PDB: 1y9g_A* 1y9m_A* Back     alignment and structure
>3pij_A Beta-fructofuranosidase; five-bladed beta-propeller and beta-sandwich domains, glycos hydrolase family 32, probiotic bacteria, fructose; HET: FRU; 1.80A {Bifidobacterium longum} PDB: 3pig_A* Back     alignment and structure
>3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A* 3u75_A* 3u14_A* Back     alignment and structure
>4ffh_A Levan fructotransferase; glycoside hydrolase; HET: SUC; 2.20A {Arthrobacter ureafaciens} PDB: 4ffi_A* 4ffg_A* 4fff_A Back     alignment and structure
>1w2t_A Beta fructosidase; hydrolase, glycosidase, invertase, raffinose; HET: SUC GLA CIT; 1.87A {Thermotoga maritima} SCOP: b.29.1.19 b.67.2.3 PDB: 1uyp_A* Back     alignment and structure
>1oyg_A Levansucrase; glycoside hydrolase, beta-propeller, TR; 1.50A {Bacillus subtilis} SCOP: b.67.2.2 PDB: 1pt2_A* 3byl_A 3byn_A* 3byk_A 3byj_A 2vdt_A 3om4_A* 3om7_C* 3om6_A* 3om5_A* 3om2_A* Back     alignment and structure
>3ugf_A Sucrose:(sucrose/fructan) 6-fructosyltransferase; glycoside hydrolase family 32; HET: NAG FUC BMA MAN; 1.70A {Pachysandra terminalis} PDB: 3ugg_A* 3ugh_A* Back     alignment and structure
>3sc7_X Inulinase; glycoside hydrolase family 32, glycosylation cytosol, hydrolase; HET: MAN NAG EPE; 1.50A {Aspergillus ficuum} PDB: 3rwk_X* Back     alignment and structure
>3vss_A Beta-fructofuranosidase; glycoside hydrolase family 68, beta-propeller, hydrolase; HET: FRU; 1.97A {Arthrobacter} PDB: 3vsr_A* Back     alignment and structure
>2yfr_A Levansucrase, inulosucrase; fructosyltransferase, glycoside hydrolase family GH68, trans sugar utilization; 1.75A {Lactobacillus johnsonii} PDB: 2yft_A* 2yfs_A* Back     alignment and structure
>2ac1_A Invertase; five fold beta propeller, hydrolase; HET: NAG MAN; 2.15A {Arabidopsis thaliana} PDB: 2xqr_A* 2oxb_A* 2qqw_A* 2qqv_A* 2qqu_A* Back     alignment and structure
>1st8_A Fructan 1-exohydrolase IIA; five fold beta propeller; HET: NDG NAG MAN; 2.35A {Cichorium intybus} PDB: 2add_A* 2ade_A* 2aey_A* 2aez_A* Back     alignment and structure
>3lig_A Fructosyltransferase; five bladed beta-propeller fold, hydrolase; 1.80A {Aspergillus japonicus} PDB: 3ldk_A* 3lem_A* 3ldr_A 3lih_A* 3lf7_A 3lfi_A* Back     alignment and structure
>3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A* Back     alignment and structure
>4hbs_A Putative hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.80A {Bacteroides ovatus} Back     alignment and structure
>2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A Back     alignment and structure
>4hbs_A Putative hydrolase; 5-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.80A {Bacteroides ovatus} Back     alignment and structure
>3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A* Back     alignment and structure
>2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A Back     alignment and structure
>4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 493
d1y7ba2321 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal do 3e-15
d2exha2322 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal do 8e-15
d1uv4a1291 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus 3e-14
d1yrza2317 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-termina 3e-14
d1wl7a1312 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermo 2e-13
d1gyha_318 b.67.2.1 (A:) alpha-L-arabinanase {Cellvibrio cell 4e-12
d1oyga_440 b.67.2.2 (A:) Levansucrase {Bacillus subtilis [Tax 1e-04
>d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Length = 321 Back     information, alignment and structure

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Arabinanase/levansucrase/invertase
family: alpha-L-arabinanase-like
domain: Beta-D-xylosidase N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 74.2 bits (181), Expect = 3e-15
 Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 14/200 (7%)

Query: 217 GVGCYSSKDMWTWKNEGIVLAAEETNETHDLYKLNVLERPKVIYND-RTGKYVMWMHIDD 275
           GV  + SKD+  W      L      +         +  P + Y+D +       + + D
Sbjct: 34  GVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNPNSGGIWAPDLSYHDGKFWLIYTDVKVTD 93

Query: 276 CNYTKAAVGVAISDYPTGPFDYLYSKRPHGFDSRDMTIFKDDDGVAYLVYSSEDNSELHI 335
             +      +   +   G +    +    GF   D ++F D+DG  YLV    D    + 
Sbjct: 94  GMWKDCHNYLTTCESVDGVWSDPITLNGSGF---DASLFHDNDGKKYLVNMYWDQRTYNH 150

Query: 336 G----------PLTSDYLDVSNVVRRILVGQHREAPALFKHLGTYYMVTSGCTGWAPNEA 385
                            +  + ++ +    ++ E P ++     YY+ T+       +  
Sbjct: 151 NFYGIVLQEYSDKEKKLIGKAKIIYKGTDIKYTEGPHIYHIGDYYYLFTAEGGTTYEHSE 210

Query: 386 LVHAAESIMGPWEDMGNPCI 405
            V  +++I GP+E      +
Sbjct: 211 TVARSKNIDGPYEIDPEYPL 230
>d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain {Geobacillus stearothermophilus [TaxId: 1422]} Length = 322 Back     information, alignment and structure
>d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]} Length = 291 Back     information, alignment and structure
>d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]} Length = 317 Back     information, alignment and structure
>d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} Length = 312 Back     information, alignment and structure
>d1gyha_ b.67.2.1 (A:) alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: 155077]} Length = 318 Back     information, alignment and structure
>d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId: 1423]} Length = 440 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query493
d1uv4a1291 Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 14 100.0
d1yrza2317 Beta-D-xylosidase N-terminal domain {Bacillus halo 100.0
d1y7ba2321 Beta-D-xylosidase N-terminal domain {Clostridium a 100.0
d2exha2322 Beta-D-xylosidase N-terminal domain {Geobacillus s 100.0
d1wl7a1312 Arabinanase-TS {Bacillus thermodenitrificans [TaxI 100.0
d1gyha_318 alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: 100.0
d1oyga_440 Levansucrase {Bacillus subtilis [TaxId: 1423]} 99.73
d1uypa2294 Beta-fructosidase (invertase), N-terminal domain { 99.54
d2exha2322 Beta-D-xylosidase N-terminal domain {Geobacillus s 99.38
d1y7ba2321 Beta-D-xylosidase N-terminal domain {Clostridium a 99.37
d1yrza2317 Beta-D-xylosidase N-terminal domain {Bacillus halo 99.34
d1vkda_327 Hypothetical protein TM1225 {Thermotoga maritima [ 99.33
d1uv4a1291 Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 14 99.24
d1wl7a1312 Arabinanase-TS {Bacillus thermodenitrificans [TaxI 99.14
d1gyha_318 alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: 99.13
d1y4wa2353 Exo-inulinase {Aspergillus awamori [TaxId: 105351] 99.06
d1uypa2294 Beta-fructosidase (invertase), N-terminal domain { 98.64
d1oyga_440 Levansucrase {Bacillus subtilis [TaxId: 1423]} 98.57
d1vkda_327 Hypothetical protein TM1225 {Thermotoga maritima [ 98.45
d1y4wa2353 Exo-inulinase {Aspergillus awamori [TaxId: 105351] 98.14
d1w0pa3364 Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 81.96
>d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Arabinanase/levansucrase/invertase
family: alpha-L-arabinanase-like
domain: Endo-1,5-arabinanase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=3.1e-39  Score=320.54  Aligned_cols=258  Identities=17%  Similarity=0.226  Sum_probs=192.0

Q ss_pred             eeCCceEEECCCCEEEEEEEecCCCccccccccccccccCcEEEEEeCCCCCCEEeceeccCCCccccccc-CCCCeeee
Q 011114          177 AHGGGILYDERSRTYFWYGEYKDGPTYHAHKKAAARVDIIGVGCYSSKDMWTWKNEGIVLAAEETNETHDL-YKLNVLER  255 (493)
Q Consensus       177 ahgg~Ii~~~~~g~YY~ygT~~~~~~~~~~~~g~~~~~~~gi~v~sS~DLvnWt~~G~vL~~~~~~~~~~~-~~~~~iWA  255 (493)
                      +|||+|++.  +|+||||+|...              ..+++.|++|+||+||+.++.+++.....+.... ..++.+||
T Consensus        10 ihDP~vi~~--~g~YY~~~t~~~--------------~~~g~~i~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~~~~~WA   73 (291)
T d1uv4a1          10 LHDPTMIKE--GSSWYALGTGLT--------------EERGLRVLKSSDAKNWTVQKSIFTTPLSWWSNYVPNYGQNQWA   73 (291)
T ss_dssp             CSSCEEEEE--TTEEEEEEECCT--------------TSSBEEEEEESSSSSCEEEEEETSSCCGGGGGTSTTCCSBCEE
T ss_pred             ccCCEEEEE--CCEEEEEEecCC--------------CCCcEEEEECCCCCCCEECcccccCCcccccccCCccCCcccc
Confidence            599999986  599999998643              2467999999999999999999987654332211 23467999


Q ss_pred             ceEEEEccCCEEEEEEEEeCCCCCcceEEEEEeCC-CCCCceecccC----CCCCCCcCCceEEEcCCCcEEEEEEecCC
Q 011114          256 PKVIYNDRTGKYVMWMHIDDCNYTKAAVGVAISDY-PTGPFDYLYSK----RPHGFDSRDMTIFKDDDGVAYLVYSSEDN  330 (493)
Q Consensus       256 P~Viyn~~~GkYylyfs~~~~~~~~~~IGVA~Sds-P~GPf~~~~~~----~p~g~~siDPsvF~DdDGk~YL~~g~~~n  330 (493)
                      |+|++  .+|+|||||++...+....+|++|+|++ |+|||++.+..    ...+..+|||+||+|+||+.||+|++.. 
T Consensus        74 P~v~~--~~g~yylyy~~~~~~~~~~~i~~a~s~~~~~Gpw~~~~~~~~~~~~~~~~~iDp~vf~D~dG~~Y~~~~~~~-  150 (291)
T d1uv4a1          74 PDIQY--YNGKYWLYYSVSSFGSNTSAIGLASSTSISSGGWKDEGLVIRSTSSNNYNAIDPELTFDKDGNPWLAFGSFW-  150 (291)
T ss_dssp             EEEEE--ETTEEEEEEEECCTTCSCEEEEEEEESCTTTTCCEEEEEEEEECTTSSSCCCSCEEEECTTSCEEEEECBST-
T ss_pred             eEEEE--ECCEEEEEEEecCCCCCcceEEEEEeCCCCCCCCCcCccccccccCCCCCccCceEEEecCCcEEEEecccC-
Confidence            99998  7899999999986655678999999988 78999975421    2345678999999999999999998754 


Q ss_pred             CceEEEEcCCCCCCccccEEEeec----CceeeeeEEEEECCEEEEEEeCCCC---CCCCcEEE-EEECCCCCCceeC-C
Q 011114          331 SELHIGPLTSDYLDVSNVVRRILV----GQHREAPALFKHLGTYYMVTSGCTG---WAPNEALV-HAAESIMGPWEDM-G  401 (493)
Q Consensus       331 ~~i~iaeLs~D~~~~~g~~~~i~~----g~~~EgP~i~K~~G~YYL~yS~~tg---~~~n~~v~-~~Sdsp~GPwt~~-g  401 (493)
                      ..|++++|++|++.+.++...+..    +..+|||.|+|++|+|||+||..++   ...+|.+. ++|++|+|||++. +
T Consensus       151 ~~i~i~~l~~~~~~~~g~~~~i~~~~~~~~~~EgP~i~k~~g~Yyl~~S~~~~~~~~~~~y~v~~~~s~~~~GP~~~~~~  230 (291)
T d1uv4a1         151 SGIKLTKLDKSTMKPTGSLYSIAARPNNGGALEAPTLTYQNGYYYLMVSFDKCCDGVNSTYKIAYGRSKSITGPYLDKSG  230 (291)
T ss_dssp             TCEEEEEECTTTCSEEEEEEEEECCTTTTTCEEEEEEEEETTEEEEEEEEECSSSSSCCEEEEEEEEESSTTCCCBCTTS
T ss_pred             CceEEEeeccccccCcCceeEEEecCCCCccccccEEEEECCEEEEEEecCcccCCCCCCceeEEEEcCCCCCCCccCCC
Confidence            579999999999988888777642    4679999999999999999995432   34556665 5799999999988 6


Q ss_pred             CccccCCccce----eeccCCCceEEEcccCCcccEEEEEeEeCCCCCCCCeeEEEEEEEcC
Q 011114          402 NPCIGGNKVFR----LTTFFAQSTYVIPLAGLPGLYIFMADRWNPADLRESRYIWLPLIVRG  459 (493)
Q Consensus       402 ~Pv~~~~~~~~----~~t~gsq~~~V~~~~G~~~~yi~y~d~w~~~~~~~sR~v~lPl~~~~  459 (493)
                      +|++.+...+.    ...++.+|..++.     ++|++||- +.......++..+.||.|++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~gpgh~~~~~-----~~~~~yH~-~~~~~~~~r~~~~~~l~w~d  286 (291)
T d1uv4a1         231 KSMLEGGGTILDSGNDQWKGPGGQDIVN-----GNILVRHA-YDANDNGIPKLLINDLNWSS  286 (291)
T ss_dssp             CBGGGTCCEEEECCCSSEEEEEEEEEET-----TTEEEEEE-EETTTTTEEEEEEEECBCTT
T ss_pred             CceecCCCeeeecCCCCEEeCCCcCeec-----CCEEEEEe-eeCCCCCeEEEEEEEEEEEC
Confidence            78775432110    1112223334442     45788864 44433333334568999953
>d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain {Geobacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} Back     information, alignment and structure
>d1gyha_ b.67.2.1 (A:) alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1uypa2 b.67.2.3 (A:1-294) Beta-fructosidase (invertase), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2exha2 b.67.2.1 (A:3-324) Beta-D-xylosidase N-terminal domain {Geobacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1y7ba2 b.67.2.1 (A:4-324) Beta-D-xylosidase N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1yrza2 b.67.2.1 (A:1004-1320) Beta-D-xylosidase N-terminal domain {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1uv4a1 b.67.2.1 (A:3-293) Endo-1,5-arabinanase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1wl7a1 b.67.2.1 (A:2-313) Arabinanase-TS {Bacillus thermodenitrificans [TaxId: 33940]} Back     information, alignment and structure
>d1gyha_ b.67.2.1 (A:) alpha-L-arabinanase {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1y4wa2 b.67.2.3 (A:20-372) Exo-inulinase {Aspergillus awamori [TaxId: 105351]} Back     information, alignment and structure
>d1uypa2 b.67.2.3 (A:1-294) Beta-fructosidase (invertase), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1oyga_ b.67.2.2 (A:) Levansucrase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1y4wa2 b.67.2.3 (A:20-372) Exo-inulinase {Aspergillus awamori [TaxId: 105351]} Back     information, alignment and structure
>d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure